Citrus Sinensis ID: 014154

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
Protein Sequence
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQEDATETLPVKRKEAPEEKDRSKKKKSKENEESKKLKSKKKRRAKGDIHDDAS
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEcccccEEEEEEcccccccccEEEEEcccccccEEEEEEEEccccccEEEEEEcccEEEEEEcccccEEEEEcccccEEEEcccccEEEEEccccccccccccccEEEEEEccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEEccccEEEEEEccccEEEEEEccccEEEEEccccccccccccccccEEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEEEEEEcEEEEEEEcccccEEEEcccccEEEEEcccccEEEcccccccccEEcccccccccEEcccccccEEEEcccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccEcccccccccEEEEEccccEEEEEEEccccccccHHEEEccccccHccEEEEEEcccccccEEEEEEcccEEEEEEccccccccEEccccccccccccccEEEEEEEccccccccccccEEEEEEcccEEEEEEcccccccccccccccEEEEEccccEEEEEEccccccEEEEccccccEEEEEcccccEEEEEEccccccccccccEEEEcEEEEccccccEEEEEccccEEEEEEcccccccEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEcccccEcEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEcccEEEEEEccccccccccccccccHHHHHccccccccHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHcccccHcccc
Coil and Loop (DISEMBL)
mprtttlecpgcpplraltfdSLGLIKVIEArgehggvpkvverwgdphssncvlaasiddsqndpLLAVARKNgltdilnplnGDLRVAIsnagdsgaqpeddgivGLHLFKrqreesssrsrtlltcttkgkasmrsIEVTKVSAESscstvkswnvcasgtiafskvdisekfslfggkgvevnvwdldkcekiwtakpppknslgiftptwftsaaflsiddhrkfvagtndhqvrlydtsaqrrpvmsfdfretpikavaeepdsfniyigngsgdlasvdirTGKLLGCfigkcsgsirsiarhptlpiiascgldsylrfWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAnaaadapmleiqngndtqedatetlpvkrkeapeekdrskkkkskENEESKKLKSKKkrrakgdihddas
Flexible Loop (DISEMBL)
mprtttlecpgcpplralTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAgdsgaqpeddGIVGLHLFkrqreesssrsrtlltcttkgkasmrsievtkvsaesscstvkswnVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWtakpppknslGIFTPTWFTSAAFLSIDDHRKFVAGtndhqvrlydtsaqrrpvmsfDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMleiqngndtqedatetlpvkrkeapeekdrskkkkskeneeskklkskkkrrakgdihddas
Low Complexity Region (SEG)
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKrqreesssrsrtlltcttKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSafadkevanaaadaPMLEIQNGNDTQEDATETLPVKRKEAPeekdrskkkkskeneeskklkskkkrrakGDIHDDAS
Disordered region (IsUnstruct)
*******ECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI**************IVGLHL**************************************SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA**********************************************************************
Disordered Region (DISOPRED)
*******ECPGCPPLRALTFDSLGLIKVIEARGE**G****V**WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK******ADAPMLEIQNGNDTQED**************************************************
Disordered Region (DISEMBL)
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR************LTCTTKGKASMRSIE*************KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQEDATETLP********************************************
Disordered Region (DISPRO)
*****TLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF****************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQEDATETLPVKRKEAPEExxxxxxxxxxxxxxxxxxxxxKKRRAKGDIHDDAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	430	2.2.26 [Sep-21-2011]
Q58D06	385	WD repeat-containing prot	yes	no	0.390	0.436	0.402	5e-27
Q6RFH5	385	WD repeat-containing prot	yes	no	0.390	0.436	0.390	9e-26
Q8VCG3	384	WD repeat-containing prot	yes	no	0.388	0.434	0.393	2e-25
Q54FW9	508	WD repeat-containing prot	yes	no	0.448	0.379	0.297	7e-20
Q6BUJ2	430	Ribosome biogenesis prote	yes	no	0.355	0.355	0.293	4e-10
A5DX41	447	Ribosome biogenesis prote	N/A	no	0.332	0.319	0.278	1e-09
A5DKC4	398	Ribosome biogenesis prote	N/A	no	0.527	0.570	0.242	2e-09
Q5A2T0	406	Ribosome biogenesis prote	N/A	no	0.341	0.362	0.288	2e-09
A3LVX0	430	Ribosome biogenesis prote	yes	no	0.348	0.348	0.279	7e-08
O94698	387	Ribosome biogenesis prote	yes	no	0.351	0.390	0.263	2e-07

>sp|Q58D06|WDR74_BOVIN WD repeat-containing protein 74 OS=Bos taurus GN=WDR74 PE=2 SV=1

 Score =  122 bits (306), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 99/174 (56%), Gaps = 6/174 (3%)

Query: 180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct: 149 GGKENALKVWDLQGSEEPLFRAKNVRNDWLDLRVPVWDQDIQFLP--ESQKLVTCTGYHQ 206

Query: 239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
           VR+YD  S QRRPV+   + E P+ AV   P+  ++ +GN  G LA +D+R G+LLGC  
Sbjct: 207 VRVYDPASPQRRPVLEATYGEYPLTAVTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLNEVVF 350
           G  +GS+R +  HP+ P++ASCGLD  LR   I+  R L   V+LK  LN ++ 
Sbjct: 267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIRNPRGLEHKVYLKSQLNCLLL 319

Bos taurus (taxid: 9913)

>sp|Q6RFH5|WDR74_HUMAN WD repeat-containing protein 74 OS=Homo sapiens GN=WDR74 PE=1 SV=1

 Score =  118 bits (296), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 97/174 (55%), Gaps = 6/174 (3%)

Query: 180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           GGK   + +WDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQ
Sbjct: 149 GGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQ 206

Query: 239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
           VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct: 207 VRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query: 298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLNEVVF 350
           G  +GS+R +  HP+ P++ASCGLD  LR   I+  R L   V+LK  LN ++ 
Sbjct: 267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQNPRGLEHKVYLKSQLNCLLL 319

Homo sapiens (taxid: 9606)

>sp|Q8VCG3|WDR74_MOUSE WD repeat-containing protein 74 OS=Mus musculus GN=Wdr74 PE=2 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 96/173 (55%), Gaps = 6/173 (3%)

Query: 181 GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GK   + VWDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQV
Sbjct: 150 GKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDTQFLP--GSQKLVTCTGYHQV 207

Query: 240 RLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
           R+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D R G+LLGC  G
Sbjct: 208 RVYDPVSPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLGCLKG 267

Query: 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLNEVVF 350
             +GS+R +  HP+ P++ASCGLD  LR   I+  R L   V+LK  LN ++ 
Sbjct: 268 -LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIRNPRGLEHKVYLKSQLNCLLL 319

Mus musculus (taxid: 10090)

>sp|Q54FW9|Y0555_DICDI WD repeat-containing protein DDB_G0290555 OS=Dictyostelium discoideum GN=DDB_G0290555 PE=4 SV=1

 Score = 99.0 bits (245), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 111/205 (54%), Gaps = 12/205 (5%)

Query: 160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA 219
            A+    F+    ++KF+ FGGK V + +WDL+K  K ++AK    + L +  P      
Sbjct: 160 VATNLSGFAMNPSNDKFA-FGGKDVNLTIWDLEKQVKTYSAKFK-HDFLNLQEPVSINVV 217

Query: 220 AFLSIDDHRKFVAGTNDHQVRLYD--TSAQRRPVMSFDFRETPIKAV--AEEPDSFNIYI 275
            +++ D   K + G+ D +++ YD  +   R   +   F + PI+++    + + +  Y 
Sbjct: 218 KYMNDD---KILIGS-DFRIKAYDLRSKTNRSSFLDVSFSKHPIQSIQYTNQKEHY-FYA 272

Query: 276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
            +  G +   D+RT + +G F    +GS++ IA HPTLP++A+ GLD +LR +++  R++
Sbjct: 273 SDSIGKVFCYDVRTSRQVGSF-KDSAGSVKDIAIHPTLPLLATVGLDRHLRVYNLDNRKM 331

Query: 336 LSAVFLKQHLNEVVFDSAFADKEVA 360
           L  +FLKQ L+ V+F       E+A
Sbjct: 332 LHKIFLKQRLSCVLFSKEEPTNEIA 356

Dictyostelium discoideum (taxid: 44689)

>sp|Q6BUJ2|NSA1_DEBHA Ribosome biogenesis protein NSA1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NSA1 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 24/177 (13%)

Query: 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSF 254
           I+TA+    + L +  P W +S  F      D  KF+  T   QVR+YDT+  +RP+  +
Sbjct: 193 IFTARNVKNDHLDLRPPIWISSILFFEEKPKDGYKFLTSTRYGQVRIYDTTHGKRPIQDY 252

Query: 255 DFRETPIKAV----AEEP----DSFNIYIGNGSGDLASVDIRT------------GKLLG 294
              E PI  +    +EE     D+ N+        + S   +T             KLLG
Sbjct: 253 KVCEKPIVTLNFADSEEEVIVSDTHNLVAKYSLAQIDSKAFKTHSASAGEITKPVSKLLG 312

Query: 295 CF-IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVF 350
            F  G  +G+I  +       II++ GLD YLR +DI +R++L+ V+L   +++V+ 
Sbjct: 313 KFSAGGNTGAIVGVNIFDD-EIISTGGLDRYLRTYDISSREILAKVYLGVQISDVLM 368

Involved in the biogenesis of the 60S ribosomal subunit.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|A5DX41|NSA1_LODEL Ribosome biogenesis protein NSA1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=NSA1 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 26/169 (15%)

Query: 197 IWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDHRKFVAGTNDHQVRLYDTSAQRRPVMS 253
           ++ AK    + L +  P W T+  F +    +   K +  T   Q+R+YDT   R+PV  
Sbjct: 237 LFKAKNVSNDHLNLRVPIWITNILFFTNNVTNGQYKLITSTRYGQLRIYDTKHGRKPVKD 296

Query: 254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLA---SVDI------RTG------------KL 292
           +    TPI  +    D     +   + +L    S+DI      +T             KL
Sbjct: 297 YPVSTTPILTLLFGNDKETEVVLTDTQNLMAKYSLDIIDDKAFKTNSASAGDIIKPVPKL 356

Query: 293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341
           LG + G  +G+  ++A+     I+A  GLD YLR +D+++RQ+L+ V+L
Sbjct: 357 LGKYTGGNTGA--TLAQQVYEGIVAFAGLDRYLRVFDVESRQILAKVYL 403

Involved in the biogenesis of the 60S ribosomal subunit.

Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) (taxid: 379508)

>sp|A5DKC4|NSA1_PICGU Ribosome biogenesis protein NSA1 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=NSA1 PE=3 SV=2

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 122/280 (43%), Gaps = 53/280 (18%)

Query: 107 VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV--------KSWN 158
           V LH+F        S    L+     GKA++  +   K + E  C  V        +++ 
Sbjct: 98  VSLHVF--------SEFDALVMGLDSGKAAL--VGFHKNTLEKECQIVDLPGGKPIEAFE 147

Query: 159 VCAS--GTIAF----SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT 212
            C S  G  A+    + + I + F +  GK V++    L+  E ++ AK    + L +  
Sbjct: 148 ACPSQPGVFAYGGKENDLRIVKMFEV--GKKVKL----LESVEVLFAAKNVKNDHLDLRV 201

Query: 213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV-AEEPDSF 271
           P W T   F+S  +  K +  T   Q+R+YDT+  R+P   +     PI  +     +S 
Sbjct: 202 PIWITKIRFISSKNSYKLITATRYGQLRIYDTNHGRKPAHDYQVCTNPIITLNFAGSNSD 261

Query: 272 NIYIGNGSG-----DLASVDIRTGK---------------LLGCFI-GKCSGSIRSIARH 310
            + I +         L S+D +  K               LLG +  G  +G+I  ++  
Sbjct: 262 EVIITDNRNMVARHSLVSIDKKAFKTNSATVGDIIKPVPRLLGKYQEGGNTGAIFGVSCF 321

Query: 311 PTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVF 350
                +A+ GLD YLR +D++TR+++S V++   + +++F
Sbjct: 322 KD-TFVATGGLDRYLRVYDLETREMVSKVYMGSQIADILF 360

Involved in the biogenesis of the 60S ribosomal subunit.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

>sp|Q5A2T0|NSA1_CANAL Ribosome biogenesis protein NSA1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NSA1 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 23/170 (13%)

Query: 193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM 252
           K + I+ AK    + L +  P W T+  F       K V  T   Q+RLYDT+  R+P  
Sbjct: 192 KPQIIFKAKNVRNDHLELRVPIWITNILFAKAAKGYKLVTSTRYGQIRLYDTAEGRKPRK 251

Query: 253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS------VDIR---------------TGK 291
            +   E PI  +    D     I   +  L +      VD +                 K
Sbjct: 252 DYKVTEKPIVTLTFANDEQTEIIVTDTHSLIAKYSLTQVDEKAFKTISASAGEIVKPVPK 311

Query: 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL 341
           LLG F G  +G+  +   H    I+A  GLD YLR +D+++R++L+ V+L
Sbjct: 312 LLGKFTGGNTGA--TFGVHAYERIVAFAGLDRYLRVFDLESREILAKVYL 359

Involved in the biogenesis of the 60S ribosomal subunit.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|A3LVX0|NSA1_PICST Ribosome biogenesis protein NSA1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=NSA1 PE=3 SV=2

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 36/186 (19%)

Query: 178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR--KFVAGTN 235
           +F  + VE N     K E ++TAK    + L +  P W T   F +    +  KF+  T+
Sbjct: 186 IFDTENVENNF----KSEVVFTAKNVKNDHLDLRVPVWITKIRFFTEQPEKGYKFITATH 241

Query: 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVA---EEP------DSFNIYIGNGSGDLASVD 286
             Q+R+YDT+  RRPV  F   + PI  +    EE       DS N+        L  VD
Sbjct: 242 YGQIRVYDTNHGRRPVRDFTVCQKPILTLTFANEEESEVIISDSHNLI---AKHSLIQVD 298

Query: 287 IR---------------TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
            +                 KLLG F+ +  G+   +     L  + + GLD YLR +D+ 
Sbjct: 299 DKASKTHSASAGDIIKPVAKLLGRFVDQF-GATYGVEVGEGL--LVTGGLDRYLRVFDLA 355

Query: 332 TRQLLS 337
           +R++++
Sbjct: 356 SREIVA 361

Involved in the biogenesis of the 60S ribosomal subunit.

Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (taxid: 322104)

>sp|O94698|NSA1_SCHPO Ribosome biogenesis protein nsa1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nsa1 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 16/167 (9%)

Query: 185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF----LSIDDHR---------KFV 231
           E+ +W  +   K++  K    +SL +    W T   F    +++ D +          F 
Sbjct: 167 ELELWRTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTEDIINVIDGKSEDDESLCFHFA 226

Query: 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291
             T+  Q+R YDT   RRPV +FD   +P+  V   P    +Y  +    ++  D    K
Sbjct: 227 TITHYGQLRFYDTKHGRRPVSTFDVSTSPLSHVGLLPSIKLLYFADKRAQISIFDHSKKK 286

Query: 292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA 338
           ++G F G   G+  SI  H    ++A  GLD  +R +D   + L +A
Sbjct: 287 VIGRFQG-VKGAPSSI--HCLGNVVAITGLDRNVRIFDADRKPLANA 330

Involved in the biogenesis of the 60S ribosomal subunit.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
225427147	421	PREDICTED: WD repeat-containing protein	0.897	0.916	0.719	1e-162
224133888	365	predicted protein [Populus trichocarpa]	0.820	0.967	0.756	1e-155
307136107	422	WD-repeat protein [Cucumis melo subsp. m	0.953	0.971	0.653	1e-154
356560339	550	PREDICTED: WD repeat-containing protein	0.948	0.741	0.631	1e-150
224119618	355	predicted protein [Populus trichocarpa]	0.797	0.966	0.729	1e-148
255540311	406	WD-repeat protein, putative [Ricinus com	0.934	0.990	0.654	1e-147
356520388	445	PREDICTED: WD repeat-containing protein	0.960	0.928	0.623	1e-147
15218889	468	WD40 domain-containing protein [Arabidop	0.9	0.826	0.610	1e-135
297845852	471	transducin family protein [Arabidopsis l	0.9	0.821	0.605	1e-133
218199685	433	hypothetical protein OsI_26132 [Oryza sa	0.937	0.930	0.558	1e-125

>gi|225427147|ref|XP_002277288.1| PREDICTED: WD repeat-containing protein 74 [Vitis vinifera] gi|297742065|emb|CBI33852.3| unnamed protein product [Vitis vinifera]

 Score =  579 bits (1492), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 280/389 (71%), Positives = 327/389 (84%), Gaps = 3/389 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRT+TLECPGCPP+RALTFD LGL+KV EAR + GG+PKVV+RWG+P SS C+LAASID
Sbjct: 1   MPRTSTLECPGCPPIRALTFDVLGLVKVTEARSKEGGIPKVVDRWGEPDSSKCILAASID 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D ++ PLLA+AR+ GL +ILNPLNG   ++ISN  D+G +P DD IVGLHLFK+Q  + S
Sbjct: 61  DRKSGPLLAIAREGGLIEILNPLNGHPCLSISNIIDNGPEPGDDAIVGLHLFKKQNLDLS 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCS-TVKSWNVCASGTIAFSKVDISEKFSLF 179
           SRS TLLTCTTKG ASMRS+E+T   A+S+ S + ++WNVCASG I  S+VD +E ++LF
Sbjct: 121 SRSHTLLTCTTKGNASMRSVELTSSHADSTSSVSSRTWNVCASGNILCSQVDGNENYALF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVNVWDL++  KIWTAK PPKNSLG+FTPTWFTSA FLS DDHRKFVAGTN HQV
Sbjct: 181 GGKGVEVNVWDLEQGTKIWTAKSPPKNSLGLFTPTWFTSATFLSKDDHRKFVAGTNSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQRRPV+SFDFRETPIKAVAE+ D + IYIGNGSGDLASVD+RTGKLLGCF+GK
Sbjct: 241 RLYDISAQRRPVISFDFRETPIKAVAEDQDGYTIYIGNGSGDLASVDMRTGKLLGCFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359
           CSGSIRSIARHP LP+IASCGLDSYLRFWDIKTR++LSAVFLKQ L  VVFDS FA++EV
Sbjct: 301 CSGSIRSIARHPELPVIASCGLDSYLRFWDIKTRKVLSAVFLKQPLTNVVFDSNFAEEEV 360

Query: 360 ANAAADAPMLEIQNGNDTQE-DATETLPV 387
            ++  D P  E QN N+TQE D  E  P+
Sbjct: 361 PSSVVDPPT-EAQNTNETQESDEEEVQPL 388

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133888|ref|XP_002321685.1| predicted protein [Populus trichocarpa] gi|222868681|gb|EEF05812.1| predicted protein [Populus trichocarpa]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 271/358 (75%), Positives = 297/358 (82%), Gaps = 5/358 (1%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTLECPGCPPLRALTFDSLGLIKVIE+RGE G +P+VVERWGDP SS CVLAASID
Sbjct: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIESRGERG-IPQVVERWGDPDSSKCVLAASID 59

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D + DPLLAVARKNG  ++LNPLNG++RV  SN  + G QPEDD I GLHLFKR+R   S
Sbjct: 60  DRKKDPLLAVARKNGEVEVLNPLNGEIRVVFSNVVEDGVQPEDDAIAGLHLFKRER---S 116

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAE-SSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           + S  LLTCTTKG ASMRSI V K  A+ ++ S  K+W VC SG +  SKVD SE +++F
Sbjct: 117 TGSCALLTCTTKGNASMRSIGVDKSMADVANTSVTKTWKVCGSGNVLCSKVDGSENYAVF 176

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVN+WDL+   KIWTAKPPPKNSLGIFTPTWFT   FLS DDHRKF AGTN HQV
Sbjct: 177 GGKGVEVNLWDLESSTKIWTAKPPPKNSLGIFTPTWFTCTTFLSNDDHRKFAAGTNIHQV 236

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQRRPV+SFDFRET IKAV E+ D   IYIGNGSGDLAS D+RTGKLLGCFIGK
Sbjct: 237 RLYDISAQRRPVLSFDFRETAIKAVTEDQDGHTIYIGNGSGDLASFDMRTGKLLGCFIGK 296

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357
           CSGSIRS+ARHP LP+IASCGLDSYLR WDIKTRQLLSAVFLKQHL  VVFDS F DK
Sbjct: 297 CSGSIRSMARHPELPVIASCGLDSYLRLWDIKTRQLLSAVFLKQHLTNVVFDSNFVDK 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136107|gb|ADN33953.1| WD-repeat protein [Cucumis melo subsp. melo]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/415 (65%), Positives = 324/415 (78%), Gaps = 5/415 (1%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTL+CPGCPPLRALTFD LGL+KVIEARG+ G +PKVVERWG+P  S  VLAAS+ 
Sbjct: 1   MPRTTTLDCPGCPPLRALTFDVLGLVKVIEARGKEGEIPKVVERWGEPDFSKSVLAASLA 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D + DPLLAVARKNGL ++LNPLNG+L VAIS+  D+   P+D+ IVG+HLF +   E  
Sbjct: 61  DRKFDPLLAVARKNGLIEVLNPLNGNLHVAISDNTDTSPPPKDEAIVGMHLFSKDELEVE 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSA-ESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           SR  TLL+CTTKG ASMRSIE +  S+ ++S + VK+W VC SG +  SKVD SE  +LF
Sbjct: 121 SRRCTLLSCTTKGNASMRSIEFSSSSSRDASTNLVKTWKVCGSGDVMCSKVDGSETHALF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVN+W+L++C KIWTAK P KN+LGIFTPTWFTSA FLS DDHRKF AGTN HQV
Sbjct: 181 GGKGVEVNMWNLEQCTKIWTAKAPKKNNLGIFTPTWFTSATFLSKDDHRKFAAGTNSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQ+RPV+SFDFRETPIK++AE+ D   I++GN SGDLAS DIR GKLLGCF+GK
Sbjct: 241 RLYDISAQKRPVISFDFRETPIKSLAEDVDGNTIFVGNASGDLASFDIRNGKLLGCFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359
           CSGSIRSIARHP LP+IASCGLDSY+RFWDI TRQLLSAVFLKQHL  VVFDS F  ++V
Sbjct: 301 CSGSIRSIARHPELPVIASCGLDSYVRFWDINTRQLLSAVFLKQHLTGVVFDSHFVGEDV 360

Query: 360 ANAAADAPMLEIQNGNDTQEDATETLPVKRKEAPEEKDRSKKKKSKE--NEESKK 412
              A +    E +      E+  E +P KRK++ +E    +K+K  +  N+ESKK
Sbjct: 361 TQTAVELIQQETEAAQTVSEE--EHVPRKRKKSSKEDGEGRKRKGSKTTNKESKK 413

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560339|ref|XP_003548450.1| PREDICTED: WD repeat-containing protein 74-like [Glycine max]

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/418 (63%), Positives = 318/418 (76%), Gaps = 10/418 (2%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRT+TLEC GCPPLRALTFD+LGLIKV+EAR +  G P+VVERWGD  SS CV+A S+ 
Sbjct: 105 MPRTSTLECSGCPPLRALTFDALGLIKVVEARDKQRGAPQVVERWGDLESSKCVMAVSMI 164

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D ++ PLLAVARKN   ++L+P+NGD++  I++A D   Q E + IVGLHLF +Q  E +
Sbjct: 165 DRESHPLLAVARKNNQIEVLSPVNGDIQATITDANDLDVQSEVNNIVGLHLFAKQNSELA 224

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
           SR  TLLTCTTKG AS+RSIE+   S  SSC  + K WNVC+ G I   KVD +EKF+LF
Sbjct: 225 SRDCTLLTCTTKGNASIRSIELVDSSTVSSCIDSPKIWNVCSGGNILCCKVDGNEKFALF 284

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVE+N+WDL+   KIW +KPPPK++LGIFTPTWFTSA FL  DDHRKFVAGTN HQV
Sbjct: 285 GGKGVEMNIWDLNNFTKIWNSKPPPKDNLGIFTPTWFTSATFLMKDDHRKFVAGTNSHQV 344

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD SAQRRPV+SFDFRETPIKA+AE+ D ++IY+GNGSGD+ASVDIRTGK+LGCF GK
Sbjct: 345 RLYDMSAQRRPVLSFDFRETPIKALAEDIDGYSIYVGNGSGDMASVDIRTGKMLGCFSGK 404

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359
           CSGSIRSI RHP LP+IASCGLDSYLR WD KTRQLLSAVFLKQH+  V+FDS F  K V
Sbjct: 405 CSGSIRSIVRHPELPVIASCGLDSYLRLWDTKTRQLLSAVFLKQHIMHVLFDSNFDVKGV 464

Query: 360 ANAAADAPMLEIQNGNDTQEDATETLPVKRKEAPEEKDR-----SKKKKSKENEESKK 412
            +     P  E         +  E  P+KRK++   K+       +KK+SK+++E KK
Sbjct: 465 DS----LPCKEQTPTEILVSEEVEESPLKRKKSSRNKEHIPDGGERKKRSKQSKERKK 518

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119618|ref|XP_002318118.1| predicted protein [Populus trichocarpa] gi|222858791|gb|EEE96338.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 261/358 (72%), Positives = 289/358 (80%), Gaps = 15/358 (4%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTLECPGCPPLRALTFDSLGLIKVIE+RGE G  P+VVERWGDP SS CVLAAS D
Sbjct: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIESRGERG-TPQVVERWGDPVSSKCVLAASFD 59

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D + DP+          +++NPLNG++ V  SN G+ G QPEDD I GLHLF+R+R   S
Sbjct: 60  DRKKDPV----------EVVNPLNGEIHVVFSNVGEDGVQPEDDAISGLHLFRRER---S 106

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           S S TLLTCT+KG AS+RSI V K++A+S S S  K+W VC SG +  SKVD SE +++F
Sbjct: 107 SGSCTLLTCTSKGNASVRSIGVDKLTADSASISVTKTWKVCGSGNVLCSKVDGSENYAVF 166

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGKGVEVN+WDL+   KIWTAKPPPKNSLGIFTPTWFT   FLS DDH KFVAGTN HQV
Sbjct: 167 GGKGVEVNLWDLENSTKIWTAKPPPKNSLGIFTPTWFTCTTFLSNDDHHKFVAGTNSHQV 226

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
            LYD SAQRRPV+SFDFRET IKAV E+ D   IYIGNGSGDLAS D+RTGKLLGCFIGK
Sbjct: 227 HLYDISAQRRPVLSFDFRETAIKAVTEDQDGHTIYIGNGSGDLASFDMRTGKLLGCFIGK 286

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK 357
           CSGSIRSIARHP LP+IASCGLDSYLR WDIKTRQLLSAVFLKQHL  VVFDS F DK
Sbjct: 287 CSGSIRSIARHPELPVIASCGLDSYLRLWDIKTRQLLSAVFLKQHLTNVVFDSNFVDK 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540311|ref|XP_002511220.1| WD-repeat protein, putative [Ricinus communis] gi|223550335|gb|EEF51822.1| WD-repeat protein, putative [Ricinus communis]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 273/417 (65%), Positives = 326/417 (78%), Gaps = 15/417 (3%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTT+E PGCP LRALTFD+LG  KVIE+RG+ G +P+VV+RWGDP  S CVLA SID
Sbjct: 1   MPRTTTVETPGCPQLRALTFDALGFTKVIESRGDRG-IPQVVQRWGDPDPSKCVLAVSID 59

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA-QPEDDGIVGLHLFKRQREES 119
           D + DPLLAV RK+G+ +++N LNG ++ +ISN GD+ A +P+DD + GLHLF+RQR   
Sbjct: 60  DHKQDPLLAVGRKDGVIEVMNTLNGQIQASISNVGDADAVKPQDDAVAGLHLFRRQRLSG 119

Query: 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST-VKSWNVCASGTIAFSKVDISEKFSL 178
           S     LLTCT KG AS+R +E    SA+++ S  +++W VCASG I  SKVD SE ++L
Sbjct: 120 SC---NLLTCTMKGNASIRPLEFNGSSADNASSDGLRNWKVCASGNIFCSKVDGSENYAL 176

Query: 179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           FGGK VE+N+WDL+KC +IW AK PPKNSLGIFTPTWFTSA FLS DDHRKF AGT++HQ
Sbjct: 177 FGGKSVELNLWDLEKCSRIWNAKSPPKNSLGIFTPTWFTSATFLSNDDHRKFAAGTSNHQ 236

Query: 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
           VRLYDTSA RRPV+SFDFRE PIKAV E+ D + IYIGNGSGDLASVDIRTGKLLGCF+G
Sbjct: 237 VRLYDTSALRRPVISFDFREAPIKAVTEDQDGYTIYIGNGSGDLASVDIRTGKLLGCFLG 296

Query: 299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE 358
           KCSGSIRSIARHP LP+I SCGLDSYLR WDIKTRQLLSAVFLKQHL  VVFDS+F+++E
Sbjct: 297 KCSGSIRSIARHPELPLIGSCGLDSYLRLWDIKTRQLLSAVFLKQHLTNVVFDSSFSERE 356

Query: 359 VANAAADAPMLEIQNGNDTQ-EDATETLPVKRKEAPEEKDRSKKKKSKENEESKKLK 414
           V         +E QN N  Q ED   ++ VKRKE  +EK   KKK SK N+  K++K
Sbjct: 357 VE--------VESQNSNVIQHEDEIGSVAVKRKEKSKEKKGDKKKASKGNDGKKRVK 405

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520388|ref|XP_003528844.1| PREDICTED: WD repeat-containing protein 74-like [Glycine max]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/430 (62%), Positives = 323/430 (75%), Gaps = 17/430 (3%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRTTTLEC GCPPLRALTFD+LGLIKV+EAR +  G P VVERWGDP SS CV+A S+ 
Sbjct: 1   MPRTTTLECSGCPPLRALTFDALGLIKVVEARDKQRGAPLVVERWGDPESSKCVMAVSMI 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D ++ PLLAVARKN   ++L+P+NGD++  IS+A D   Q E++ IVGLHLF +Q  E +
Sbjct: 61  DRKSHPLLAVARKNNQIEVLSPVNGDIQATISDANDLDVQSEENNIVGLHLFAKQNSELA 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG 180
            R  TLLTCTTKG AS+RSIE+   S  SSC  +K+WNVC+ G I   KVD +EKF+LFG
Sbjct: 121 FRDCTLLTCTTKGNASIRSIELADSSKGSSC--IKTWNVCSGGNILCCKVDGNEKFALFG 178

Query: 181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR 240
           GK VE+N+WDL+   KIW +KPP K++LGIFTPT FTSA FL  DDHRKFVAGTN HQVR
Sbjct: 179 GKCVEMNIWDLNNFTKIWNSKPPTKDNLGIFTPTCFTSATFLMKDDHRKFVAGTNSHQVR 238

Query: 241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC 300
           LYD SAQRRPV+SFDFRETPIKA+AE+ D ++IY+GNGSGD+ASVDIRTGK+LGCF GKC
Sbjct: 239 LYDVSAQRRPVLSFDFRETPIKALAEDIDGYSIYVGNGSGDMASVDIRTGKMLGCFSGKC 298

Query: 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360
           SGSIRSI +HP LP+IASCGLDSYLR WD KTRQLLSAVFLKQH+  V+FDS F D +VA
Sbjct: 299 SGSIRSIVKHPELPVIASCGLDSYLRLWDTKTRQLLSAVFLKQHIIHVLFDSNF-DVKVA 357

Query: 361 NAAADAPMLEIQNGNDTQEDATETLPVKRKEAP-------EEKDRSK----KKKSKENEE 409
           +     P  E            E  P+KRK++        E K RSK    +K+SKEN+ 
Sbjct: 358 DL---LPCNEQTPTEILVSKEVEGSPLKRKKSSRNKPDGGERKKRSKQSKERKESKENDG 414

Query: 410 SKKLKSKKKR 419
            +K+ S+ +R
Sbjct: 415 WEKIASRDER 424

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218889|ref|NP_174226.1| WD40 domain-containing protein [Arabidopsis thaliana] gi|111074196|gb|ABH04471.1| At1g29320 [Arabidopsis thaliana] gi|332192951|gb|AEE31072.1| WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/390 (61%), Positives = 285/390 (73%), Gaps = 3/390 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPR    E  GCPP RALTFDSLGLIKV EARG+  G+P VV  WG+ ++S  VLAASID
Sbjct: 1   MPRVIPPENLGCPPFRALTFDSLGLIKVTEARGQERGIPTVVNTWGEMNASRSVLAASID 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D   +PLLAVARK+G  +++NP NGDL  + S  GD G  PED+ I  LHLF+++ ++ +
Sbjct: 61  DRLRNPLLAVARKDGNVEVINPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQT 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
            RS TLLTCT KG  S+RS++       S+  ++ K+W  C SG I   KVD SE FSLF
Sbjct: 121 ERSCTLLTCTKKGDVSLRSVKFPDAHGNSTDDASPKTWKACGSGEILVGKVDGSENFSLF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGK VE N+WDL++C KIW+AK PPKN+LGIFTPTWFTSA FLS DDHRKFV GT  HQV
Sbjct: 181 GGKRVEANIWDLEQCTKIWSAKCPPKNNLGIFTPTWFTSATFLSKDDHRKFVTGTKSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD S QRRPV+SFDFRET I ++AE+PD   IY+GN S DLAS DIRTGKLLG F+GK
Sbjct: 241 RLYDISTQRRPVLSFDFRETAITSIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE- 358
           CSGSIRS+ RHP   +IASCGLD YLR +D+KTRQL+SAVFLKQHL  +VFDS F+ +E 
Sbjct: 301 CSGSIRSVVRHPQHQVIASCGLDRYLRVYDVKTRQLISAVFLKQHLTGLVFDSGFSGEET 360

Query: 359 -VANAAADAPMLEIQNGNDTQEDATETLPV 387
            VAN  A+A   E     D ++D TE  PV
Sbjct: 361 AVANTVAEAATEEKMTIMDQEDDETEKAPV 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845852|ref|XP_002890807.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297336649|gb|EFH67066.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/390 (60%), Positives = 283/390 (72%), Gaps = 3/390 (0%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPR    E  GCPP+RALTFDSLGLIKV EARG+  G P VV  WG+ ++S  VLAASID
Sbjct: 1   MPRVIPPENLGCPPIRALTFDSLGLIKVTEARGKERGTPTVVNTWGEMNASRTVLAASID 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS 120
           D   +PLLAVARK+G  ++LNP NGDL  + S  GD G  PED+ I  LHLF+++ ++ +
Sbjct: 61  DRLRNPLLAVARKDGNVEVLNPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQA 120

Query: 121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
            RS TLLTCT KG  S+RS++      +S+  ++ K+W  C SG I   KVD SE FSLF
Sbjct: 121 ERSCTLLTCTKKGDVSLRSVKFPDSHGDSTDDASPKTWKACGSGEILVGKVDGSENFSLF 180

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           GGK VE N+WDL++C KIW+AK PPK++LGIFTPTWFTSA FLS DDHRKFV GT  HQV
Sbjct: 181 GGKRVEANIWDLEQCTKIWSAKSPPKDNLGIFTPTWFTSATFLSNDDHRKFVTGTKSHQV 240

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RLYD S QRRPV+SFDFRET I A+AE+PD   IY+GN S DLAS DIRTGKLLG F+GK
Sbjct: 241 RLYDISTQRRPVLSFDFRETAITAIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGK 300

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359
           CSGSIRS+ RHP   +IASCGLD YLR +D+KTR L+SAVFLKQHL  +VFDS F+ +E 
Sbjct: 301 CSGSIRSVVRHPQHQVIASCGLDRYLRVFDVKTRHLISAVFLKQHLTGLVFDSGFSGEET 360

Query: 360 --ANAAADAPMLEIQNGNDTQEDATETLPV 387
             AN   +A   E     D ++D TE  PV
Sbjct: 361 AEANTVVEAATEEKMTIMDQEDDETEEAPV 390

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218199685|gb|EEC82112.1| hypothetical protein OsI_26132 [Oryza sativa Indica Group]

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/421 (55%), Positives = 289/421 (68%), Gaps = 18/421 (4%)

Query: 1   MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
           MPRT+ +E PGCPPLRALT D LGLIKV+EAR +  GV KVVE WG P +   VLAAS+ 
Sbjct: 1   MPRTSVVESPGCPPLRALTTDILGLIKVVEARTKPAGVAKVVETWGAPDAPRAVLAASLA 60

Query: 61  DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG------DSGAQPEDDGIVGLHLFKR 114
           D   DP+LAVARKNG+ ++LNPLNG+    ++ A       DS A  E+D +  LHLF+R
Sbjct: 61  DRAVDPVLAVARKNGVVELLNPLNGETLAGVNAAAGRAAPADSSA--EEDPLATLHLFRR 118

Query: 115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE 174
              +SS    T L CT KGKA ++S+     S++ +     SW+V  SGT+ FS VD  E
Sbjct: 119 HALDSSMLG-TFLACTEKGKAYVKSVAKENASSDMAVGPSSSWDVSNSGTVQFSSVDAGE 177

Query: 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT 234
            +++FGGKG+EVN+WD+  C KIW+AK P  NSL IFT  WFT+  FL  DDHRK VA T
Sbjct: 178 SYAMFGGKGIEVNLWDITSCSKIWSAKSPRGNSLQIFTAPWFTAGTFLCKDDHRKIVACT 237

Query: 235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294
           N+HQVRLYDT++QRRPV+S DFRE+PIKAVAE+P+   +YIG G GDLAS D+RTGKLLG
Sbjct: 238 NNHQVRLYDTASQRRPVISVDFRESPIKAVAEDPNGHAVYIGTGRGDLASFDMRTGKLLG 297

Query: 295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF 354
           CF+GKCSGSIRSI RHP LP+IASCGLDSYLR WD  TRQLLSAVFLKQHL  VV DS F
Sbjct: 298 CFVGKCSGSIRSIVRHPELPLIASCGLDSYLRIWDTNTRQLLSAVFLKQHLTAVVIDSYF 357

Query: 355 ADKEVANAAADAP---MLEI-----QNGNDTQE-DATETLPVKRKEAPEEKDRSKKKKSK 405
           + +E+    +  P     E+     +  N T E D  ET  +   ++  E   SK+KKS 
Sbjct: 358 STEELEETKSKQPDPVGAEVRKERKEKKNRTSEMDEDETRMLDHDDSDSEMHTSKRKKSG 417

Query: 406 E 406
           E
Sbjct: 418 E 418

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
TAIR|locus:2013678	468	AT1G29320 "AT1G29320" [Arabido	0.911	0.837	0.572	4.4e-116
ZFIN|ZDB-GENE-060929-1138	375	wdr74 "WD repeat domain 74" [D	0.472	0.541	0.386	1e-32
UNIPROTKB|Q58D06	385	WDR74 "WD repeat-containing pr	0.381	0.425	0.411	4.5e-27
UNIPROTKB|I3LD53	385	WDR74 "Uncharacterized protein	0.381	0.425	0.405	1.2e-26
UNIPROTKB|E2R2B7	383	WDR74 "Uncharacterized protein	0.381	0.428	0.405	1.9e-26
UNIPROTKB|E9PS41	328	WDR74 "WD repeat-containing pr	0.381	0.5	0.4	6.6e-26
UNIPROTKB|Q6RFH5	385	WDR74 "WD repeat-containing pr	0.381	0.425	0.4	6.6e-26
MGI|MGI:2147427	384	Wdr74 "WD repeat domain 74" [M	0.379	0.424	0.402	1.1e-25
WB|WBGene00011538	431	T06E6.1 [Caenorhabditis elegan	0.388	0.387	0.368	4.2e-24
RGD|1582881	366	Wdr74 "WD repeat domain 74" [R	0.344	0.404	0.398	1.1e-23

TAIR|locus:2013678 AT1G29320 "AT1G29320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1144 (407.8 bits), Expect = 4.4e-116, P = 4.4e-116
 Identities = 226/395 (57%), Positives = 267/395 (67%)

Query:     1 MPRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID 60
             MPR    E  GCPP RALTFDSLGLIKV EARG+  G+P VV  WG+ ++S  VLAASID
Sbjct:     1 MPRVIPPENLGCPPFRALTFDSLGLIKVTEARGQERGIPTVVNTWGEMNASRSVLAASID 60

Query:    61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKXXXXXXX 120
             D   +PLLAVARK+G  +++NP NGDL  + S  GD G  PED+ I  LHLF+       
Sbjct:    61 DRLRNPLLAVARKDGNVEVINPCNGDLHFSYSVFGDDGCSPEDNEISALHLFRKKIDDQT 120

Query:   121 XXXXXXXXXXXKGKASMRSIEVTKVSAESSC-STVKSWNVCASGTIAFSKVDISEKFSLF 179
                        KG  S+RS++       S+  ++ K+W  C SG I   KVD SE FSLF
Sbjct:   121 ERSCTLLTCTKKGDVSLRSVKFPDAHGNSTDDASPKTWKACGSGEILVGKVDGSENFSLF 180

Query:   180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GGK VE N+WDL++C KIW+AK PPKN+LGIFTPTWFTSA FLS DDHRKFV GT  HQV
Sbjct:   181 GGKRVEANIWDLEQCTKIWSAKCPPKNNLGIFTPTWFTSATFLSKDDHRKFVTGTKSHQV 240

Query:   240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
             RLYD S QRRPV+SFDFRET I ++AE+PD   IY+GN S DLAS DIRTGKLLG F+GK
Sbjct:   241 RLYDISTQRRPVLSFDFRETAITSIAEDPDGHTIYVGNASADLASFDIRTGKLLGSFLGK 300

Query:   300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSXXXXXXX 359
             CSGSIRS+ RHP   +IASCGLD YLR +D+KTRQL+SAVFLKQHL  +VFDS       
Sbjct:   301 CSGSIRSVVRHPQHQVIASCGLDRYLRVYDVKTRQLISAVFLKQHLTGLVFDSGFSGEET 360

Query:   360 XXXXXXXPML--EIQNGNDTQEDATETLPVKRKEA 392
                         E     D ++D TE  PVKRK++
Sbjct:   361 AVANTVAEAATEEKMTIMDQEDDETEKAPVKRKKS 395

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

ZFIN|ZDB-GENE-060929-1138 wdr74 "WD repeat domain 74" [Danio rerio (taxid:7955)]

 Score = 331 (121.6 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
 Identities = 82/212 (38%), Positives = 121/212 (57%)

Query:   144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEK-IWTAK 201
             KV  E S  TV+  NV     I   + + S++  +  GGK   + VWDL+K +K I+TAK
Sbjct:   110 KVWKEGSTDTVEV-NV--GKDICKMRQNQSQRHHVATGGKENPLKVWDLEKPDKPIFTAK 166

Query:   202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDFRETP 260
                 + L +  P W    +F++  D  K V  T  H+VR+YD S  QRRPV+  DF E P
Sbjct:   167 NVAHDWLEMRVPVWVRDISFIADSD--KIVTCTGHHKVRVYDPSTPQRRPVLEADFGEYP 224

Query:   261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG 320
             + A++       + +GN  G+LA +D+R G + GCF G  +G++R +  HP+LP++ASCG
Sbjct:   225 LTALSLPASQDAVVVGNTHGELAILDLRKGLVRGCFKG-LAGAVRGLQCHPSLPLVASCG 283

Query:   321 LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS 352
             LD +LR   ++ R L   V+LK  LN V+  S
Sbjct:   284 LDRFLRVHSLEDRSLQHKVYLKSRLNCVLLSS 315

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q58D06 WDR74 "WD repeat-containing protein 74" [Bos taurus (taxid:9913)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 70/170 (41%), Positives = 97/170 (57%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct:   149 GGKENALKVWDLQGSEEPLFRAKNVRNDWLDLRVPVWDQDIQFLP--ESQKLVTCTGYHQ 206

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ AV   P+  ++ +GN  G LA +D+R G+LLGC  
Sbjct:   207 VRVYDPASPQRRPVLEATYGEYPLTAVTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query:   298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLN 346
             G  +GS+R +  HP+ P++ASCGLD  LR   I+  R L   V+LK  LN
Sbjct:   267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIRNPRGLEHKVYLKSQLN 315

GO:0005730 "nucleolus" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|I3LD53 WDR74 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 69/170 (40%), Positives = 97/170 (57%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct:   149 GGKENALKVWDLQGSEEPVFKAKNVRNDWLDLRVPIWDQDIQFLP--ESQKLVTCTGYHQ 206

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D+R G+LLGC  
Sbjct:   207 VRVYDPASPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query:   298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLN 346
             G  +GS+R +  HP+ P++ASCGLD  LR   I+  R L   V+LK  LN
Sbjct:   267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRVHRIRNPRGLEHKVYLKSQLN 315

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|E2R2B7 WDR74 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 69/170 (40%), Positives = 96/170 (56%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + VWDL   E+ ++ AK    + L +  P W     FL   + +K V  T  HQ
Sbjct:   150 GGKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--ESQKLVTCTGYHQ 207

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct:   208 VRVYDPASPQRRPVLEVTYGEYPLMAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 267

Query:   298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLN 346
             G  +GS+R +  HP+ P++ASCGLD  LR   I+  R L   V+LK  LN
Sbjct:   268 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQNPRGLEHKVYLKSQLN 316

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001825 "blastocyst formation" evidence=IEA

UNIPROTKB|E9PS41 WDR74 "WD repeat-containing protein 74" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 68/170 (40%), Positives = 95/170 (55%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + +WDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQ
Sbjct:    92 GGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQ 149

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct:   150 VRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 209

Query:   298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLN 346
             G  +GS+R +  HP+ P++ASCGLD  LR   I+  R L   V+LK  LN
Sbjct:   210 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQNPRGLEHKVYLKSQLN 258

GO:0001825 "blastocyst formation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|Q6RFH5 WDR74 "WD repeat-containing protein 74" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 68/170 (40%), Positives = 95/170 (55%)

Query:   180 GGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
             GGK   + +WDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQ
Sbjct:   149 GGKENALKIWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQ 206

Query:   239 VRLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI 297
             VR+YD  S QRRPV+   + E P+ A+   P   ++ +GN  G LA +D+R G+LLGC  
Sbjct:   207 VRVYDPASPQRRPVLETTYGEYPLTAMTLTPGGNSVIVGNTHGQLAEIDLRQGRLLGCLK 266

Query:   298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLN 346
             G  +GS+R +  HP+ P++ASCGLD  LR   I+  R L   V+LK  LN
Sbjct:   267 G-LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIQNPRGLEHKVYLKSQLN 315

GO:0001825 "blastocyst formation" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2147427 Wdr74 "WD repeat domain 74" [Mus musculus (taxid:10090)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 68/169 (40%), Positives = 94/169 (55%)

Query:   181 GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GK   + VWDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQV
Sbjct:   150 GKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDTQFLP--GSQKLVTCTGYHQV 207

Query:   240 RLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
             R+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D R G+LLGC  G
Sbjct:   208 RVYDPVSPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLGCLKG 267

Query:   299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLN 346
               +GS+R +  HP+ P++ASCGLD  LR   I+  R L   V+LK  LN
Sbjct:   268 -LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIRNPRGLEHKVYLKSQLN 315

GO:0001825 "blastocyst formation" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=ISO

GO:0016070 "RNA metabolic process" evidence=IMP

WB|WBGene00011538 T06E6.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 278 (102.9 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 63/171 (36%), Positives = 93/171 (54%)

Query:   180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GG    +  W+L+  ++ W+AK  P + LG+  P   T A F  I      +  T  H++
Sbjct:   136 GGMKNLLKTWNLETGQQTWSAKNVPPDMLGLEIPIMITDARF--IPGQNTILEATKLHEM 193

Query:   240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIG 298
             RLYD  AQRRPV    F E PI   +    +  I   N  G++   D+R+     C F G
Sbjct:   194 RLYDPRAQRRPVKKIPFMENPIMCTSLTYKTNQILAANSIGEMGLFDLRSKVHPMCKFKG 253

Query:   299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVV 349
             + +GSIRSI  HPTLP+ AS G+D +LR  D+++R+L+  ++ K  LN V+
Sbjct:   254 Q-AGSIRSITAHPTLPLAASVGIDRFLRVHDLQSRKLIHKIYCKTRLNRVL 303

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

RGD|1582881 Wdr74 "WD repeat domain 74" [Rattus norvegicus (taxid:10116)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 61/153 (39%), Positives = 86/153 (56%)

Query:   181 GKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
             GK   + VWDL   E+ ++ AK    + L +  P W     FL     +K V  T  HQV
Sbjct:   151 GKENALKVWDLQGSEEPVFRAKNVRNDWLDLRVPIWDQDIQFLP--GSQKLVTCTGYHQV 208

Query:   240 RLYD-TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG 298
             R+YD  S QRRPV+   + E P+ A+   P+  ++ +GN  G LA +D R G+LLGC  G
Sbjct:   209 RIYDPASPQRRPVLEATYGEYPLTAMTLTPEGNSVIVGNTHGQLAEIDFRQGRLLGCLKG 268

Query:   299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK 331
               +GS+R +  HP+ P++ASCGLD  LR   I+
Sbjct:   269 -LAGSVRGLQCHPSKPLLASCGLDRVLRIHRIR 300

GO:0001825 "blastocyst formation" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016070 "RNA metabolic process" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	430
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-09
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-08
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	0.002
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 71.2 bits (175), Expect = 8e-14
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 222 LSIDDHRKFVA-GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG 280
           ++      FVA  + D  ++L+D    +  V +       + +VA  PD   +   +  G
Sbjct: 141 VAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDG 199

Query: 281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF 340
            +   D+ TGK LG   G     + S+A  P   ++AS   D  +R WD++T + +    
Sbjct: 200 TIKLWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT-- 256

Query: 341 LKQHLNEV 348
           L  H N V
Sbjct: 257 LSGHTNSV 264

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.2 bits (139), Expect = 4e-09
 Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 19/213 (8%)

Query: 120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF 179
           S     L + ++ G     +I +  + + SS     S +  +  ++AFS      K    
Sbjct: 250 SPDGSLLASGSSDG-----TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP---DGKLLAS 301

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           G     V +WDL+  + + +                 +S +F S D       G++D  +
Sbjct: 302 GSSDGTVRLWDLETGKLLSSLTLKGHEG-------PVSSLSF-SPDGSLLVSGGSDDGTI 353

Query: 240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
           RL+D    +   +      + + +V+  PD   +  G+  G +   D+ TG LL    G 
Sbjct: 354 RLWDLRTGK--PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT 332
            +  + S+   P    +AS   D+ +R WD+KT
Sbjct: 412 -TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 17/153 (11%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245
           + +WDL+  E + T               + +S AF    D R   + + D  ++++D  
Sbjct: 75  IRLWDLETGECVRTLTGHTS---------YVSSVAFS--PDGRILSSSSRDKTIKVWDV- 122

Query: 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASV-DIRTGKLLGCFIGKCSGS 303
              + + +       + +VA        ++ + S D    + D+RTGK +    G  +G 
Sbjct: 123 ETGKCLTTLRGHTDWVNSVA--FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGE 179

Query: 304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL 336
           + S+A  P    + S   D  ++ WD+ T + L
Sbjct: 180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL 212

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 13/144 (9%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245
           + +WDL   + + T                  S AF    D  K ++ ++D  ++L+D S
Sbjct: 159 IKLWDLRTGKCVATLTGHTG---------EVNSVAFS--PDGEKLLSSSSDGTIKLWDLS 207

Query: 246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR 305
             +  + +    E  + +VA  PD + +  G+  G +   D+RTG+ +    G  + S+ 
Sbjct: 208 TGK-CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVT 265

Query: 306 SIARHPTLPIIASCGLDSYLRFWD 329
           S+A  P    +AS   D  +R WD
Sbjct: 266 SLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 22/233 (9%)

Query: 119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL 178
           SS    ++L  ++    +++  +++            S +V        + +  S    L
Sbjct: 118 SSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESV--------TSLAFSPDGKL 169

Query: 179 F---GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN 235
                     + +WDL   + + T                 +S AF S D      +G++
Sbjct: 170 LASGSSLDGTIKLWDLRTGKPLSTLAGHTD---------PVSSLAF-SPDGGLLIASGSS 219

Query: 236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC 295
           D  +RL+D S  +    +       + +    PD   +  G+  G +   D+R+   L  
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLR 278

Query: 296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348
            +   S S+ S+A  P   ++AS   D  +R WD++T +LLS++ LK H   V
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 14/138 (10%)

Query: 215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET----PIKAVAEEPDS 270
             T  AF    D +    G+ D  ++++D                    P++ VA   D 
Sbjct: 11  GVTCVAFS--PDGKLLATGSGDGTIKVWDLE-----TGELLRTLKGHTGPVRDVAASADG 63

Query: 271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330
             +  G+    +   D+ TG+ +    G  S  + S+A  P   I++S   D  ++ WD+
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSY-VSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 331 KTRQLLSAVFLKQHLNEV 348
           +T + L+   L+ H + V
Sbjct: 123 ETGKCLTT--LRGHTDWV 138

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD 329
           +G+LL    G  +G + S+A  P    +AS   D  ++ WD
Sbjct: 1   SGELLKTLKGH-TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 301 SGSIRSIARHPTLPIIASCGLDSYLRFWD 329
           +G + S+A  P   ++AS   D  +R WD
Sbjct: 11  TGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	430
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.98
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.98
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG1539	910	consensus WD repeat protein [General function pred	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0645	312	consensus WD40 repeat protein [General function pr	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.96
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
PTZ00420	568	coronin; Provisional	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.94
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0646	476	consensus WD40 repeat protein [General function pr	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.93
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.89
KOG2048	691	consensus WD40 repeat protein [General function pr	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG1273	405	consensus WD40 repeat protein [General function pr	99.88
KOG4328	498	consensus WD40 protein [Function unknown]	99.88
KOG2096	420	consensus WD40 repeat protein [General function pr	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG4328	498	consensus WD40 protein [Function unknown]	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.86
KOG1188	376	consensus WD40 repeat protein [General function pr	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.85
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG1188	376	consensus WD40 repeat protein [General function pr	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.84
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
COG2319	466	FOG: WD40 repeat [General function prediction only	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.79
KOG0649	325	consensus WD40 repeat protein [General function pr	99.79
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.79
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
COG2319	466	FOG: WD40 repeat [General function prediction only	99.77
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
PRK11028	330	6-phosphogluconolactonase; Provisional	99.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.77
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.77
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.77
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.76
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
KOG1334	559	consensus WD40 repeat protein [General function pr	99.76
KOG1963	792	consensus WD40 repeat protein [General function pr	99.76
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.75
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.75
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.74
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.73
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.71
KOG4227	609	consensus WD40 repeat protein [General function pr	99.7
KOG2321	703	consensus WD40 repeat protein [General function pr	99.69
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.68
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.68
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.67
KOG1334	559	consensus WD40 repeat protein [General function pr	99.67
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.65
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
KOG1310	758	consensus WD40 repeat protein [General function pr	99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.6
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.6
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.59
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.59
KOG4227	609	consensus WD40 repeat protein [General function pr	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.58
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.56
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.55
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.54
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.52
PRK03629	429	tolB translocation protein TolB; Provisional	99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.52
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
PRK05137	435	tolB translocation protein TolB; Provisional	99.49
KOG2139	445	consensus WD40 repeat protein [General function pr	99.48
PRK04922	433	tolB translocation protein TolB; Provisional	99.47
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.47
KOG2315	566	consensus Predicted translation initiation factor	99.46
KOG2321	703	consensus WD40 repeat protein [General function pr	99.45
KOG4547	541	consensus WD40 repeat-containing protein [General	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.43
KOG4547	541	consensus WD40 repeat-containing protein [General	99.43
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.42
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.39
KOG2315	566	consensus Predicted translation initiation factor	99.38
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.37
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.34
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.34
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.34
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.32
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.32
PRK00178	430	tolB translocation protein TolB; Provisional	99.3
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
PRK04792	448	tolB translocation protein TolB; Provisional	99.29
PRK01029	428	tolB translocation protein TolB; Provisional	99.27
COG4946	668	Uncharacterized protein related to the periplasmic	99.27
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.25
KOG2695	425	consensus WD40 repeat protein [General function pr	99.25
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.25
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.23
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.21
PRK01029	428	tolB translocation protein TolB; Provisional	99.2
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.2
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.19
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.18
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.18
KOG2314	698	consensus Translation initiation factor 3, subunit	99.17
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.16
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.15
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.13
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.13
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.11
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.1
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.09
COG4946	668	Uncharacterized protein related to the periplasmic	99.08
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.05
PRK04043	419	tolB translocation protein TolB; Provisional	99.03
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.03
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	99.03
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.01
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.99
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.99
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.96
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.96
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.95
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.94
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.91
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.86
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.85
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.82
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.82
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.82
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.81
KOG2695	425	consensus WD40 repeat protein [General function pr	98.81
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.8
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.8
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.78
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.75
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.75
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.71
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.67
KOG2314	698	consensus Translation initiation factor 3, subunit	98.65
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.65
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.64
PRK02888	635	nitrous-oxide reductase; Validated	98.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.6
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.59
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.54
PRK04043	419	tolB translocation protein TolB; Provisional	98.53
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.49
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.49
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.48
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.47
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.47
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.44
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.41
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.41
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.38
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.38
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.34
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.33
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.27
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.25
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.16
PRK02888	635	nitrous-oxide reductase; Validated	98.15
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.06
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.05
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.02
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.91
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.91
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.89
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.87
KOG3621	726	consensus WD40 repeat-containing protein [General	97.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.85
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.83
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.82
COG3391	381	Uncharacterized conserved protein [Function unknow	97.82
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.75
KOG3621	726	consensus WD40 repeat-containing protein [General	97.72
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.7
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.7
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.69
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.69
KOG2444	238	consensus WD40 repeat protein [General function pr	97.67
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.66
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.59
COG3391	381	Uncharacterized conserved protein [Function unknow	97.58
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.57
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.51
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.5
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.49
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.49
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.49
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.44
PRK13616	591	lipoprotein LpqB; Provisional	97.44
KOG2395	644	consensus Protein involved in vacuole import and d	97.4
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.37
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.36
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.36
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	97.32
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.28
KOG2444	238	consensus WD40 repeat protein [General function pr	97.17
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.12
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.11
KOG2395	644	consensus Protein involved in vacuole import and d	97.11
PRK13616	591	lipoprotein LpqB; Provisional	97.1
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.07
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.04
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.97
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.85
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.77
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.76
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.74
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.67
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.67
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	96.56
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.56
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.47
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.44
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.4
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.38
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	96.35
PHA02713	557	hypothetical protein; Provisional	96.24
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.01
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.95
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.9
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.84
PHA02713	557	hypothetical protein; Provisional	95.66
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.64
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.6
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.49
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.49
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.37
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.3
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.29
PHA03098	534	kelch-like protein; Provisional	95.24
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.01
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.87
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.82
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.43
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	94.4
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.26
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.2
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.16
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.15
PRK13684	334	Ycf48-like protein; Provisional	94.14
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.09
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.02
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.77
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.62
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	93.62
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.51
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.51
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	93.47
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.35
PRK10115	686	protease 2; Provisional	93.2
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	93.19
COG4590	733	ABC-type uncharacterized transport system, permeas	93.11
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	93.11
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	93.05
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	93.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.01
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	92.97
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.88
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.59
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.54
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.52
PHA03098	534	kelch-like protein; Provisional	92.31
COG5167	776	VID27 Protein involved in vacuole import and degra	92.27
PHA02790	480	Kelch-like protein; Provisional	92.01
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.79
PRK13684	334	Ycf48-like protein; Provisional	91.78
KOG2247	615	consensus WD40 repeat-containing protein [General	91.58
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.33
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.28
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.13
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.1
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.06
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.03
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.84
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.33
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	89.48
PHA02790	480	Kelch-like protein; Provisional	89.38
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.28
COG5276	370	Uncharacterized conserved protein [Function unknow	89.08
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.86
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.71
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.68
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.63
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.57
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	88.52
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	88.38
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.37
PLN00033	398	photosystem II stability/assembly factor; Provisio	88.32
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.81
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.32
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.66
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.55
COG3292	671	Predicted periplasmic ligand-binding sensor domain	86.21
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	85.81
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	85.77
COG4590	733	ABC-type uncharacterized transport system, permeas	85.76
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.16
COG3292	671	Predicted periplasmic ligand-binding sensor domain	85.14
KOG2247	615	consensus WD40 repeat-containing protein [General	84.67
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	84.49
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	84.39
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.25
COG5167	776	VID27 Protein involved in vacuole import and degra	83.75
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	83.54
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	83.39
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	83.37
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.96
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	82.62
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	82.45
KOG3616	1636	consensus Selective LIM binding factor [Transcript	82.21
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	81.05
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.99
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	80.64
PLN02193	470	nitrile-specifier protein	80.57
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	80.55
PLN02153	341	epithiospecifier protein	80.42
PF12768	281	Rax2: Cortical protein marker for cell polarity	80.16

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-49  Score=331.87  Aligned_cols=317  Identities=17%  Similarity=0.247  Sum_probs=272.8

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .+|+||+.|.++|+||+.+.     ....+..+|..-  +++++|  +|||+.||+|+.||+|++||..+|+++..-   
T Consensus       128 ~~l~tGsGD~TvR~WD~~Te-----Tp~~t~KgH~~W--Vlcvaw--sPDgk~iASG~~dg~I~lwdpktg~~~g~~---  195 (480)
T KOG0271|consen  128 SRLVTGSGDTTVRLWDLDTE-----TPLFTCKGHKNW--VLCVAW--SPDGKKIASGSKDGSIRLWDPKTGQQIGRA---  195 (480)
T ss_pred             ceEEecCCCceEEeeccCCC-----CcceeecCCccE--EEEEEE--CCCcchhhccccCCeEEEecCCCCCccccc---
Confidence            68999999999999999996     567788899988  556666  889999999999999999999998866432   


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                          +.+|...|+++.|-+.+..   ....++++++.||.++||++....        .++. -..|...|+|+.|-. .
T Consensus       196 ----l~gH~K~It~Lawep~hl~---p~~r~las~skDg~vrIWd~~~~~--------~~~~-lsgHT~~VTCvrwGG-~  258 (480)
T KOG0271|consen  196 ----LRGHKKWITALAWEPLHLV---PPCRRLASSSKDGSVRIWDTKLGT--------CVRT-LSGHTASVTCVRWGG-E  258 (480)
T ss_pred             ----ccCcccceeEEeecccccC---CCccceecccCCCCEEEEEccCce--------EEEE-eccCccceEEEEEcC-C
Confidence                3456779999988766431   233588999999999999986432        2333 337889999999974 4


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee---------cCC-------------------
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---------IDD-------------------  226 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~-------------------  226 (430)
                      .+|++|+.|++|++|+...|....++++|.         .+|+.++...         .|.                   
T Consensus       259 gliySgS~DrtIkvw~a~dG~~~r~lkGHa---------hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~  329 (480)
T KOG0271|consen  259 GLIYSGSQDRTIKVWRALDGKLCRELKGHA---------HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE  329 (480)
T ss_pred             ceEEecCCCceEEEEEccchhHHHhhcccc---------hheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence            699999999999999999999999998875         7777776630         122                   


Q ss_pred             ------CCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC
Q 014154          227 ------HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC  300 (430)
Q Consensus       227 ------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  300 (430)
                            +..|++|+.|.++.+|+....++++..+.+|..-|..+.||||+++|++++.|..|++||.++|+.+..|++| 
T Consensus       330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH-  408 (480)
T KOG0271|consen  330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH-  408 (480)
T ss_pred             HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-
Confidence                  2459999999999999999878889999999999999999999999999999999999999999999999999 


Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                      -+.|+.++|+.|.++|++|+.|.++++|++++.++...  ++|| ...|+++.|+|||.. ++++.|..+++|.
T Consensus       409 v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~D--LpGh-~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  409 VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQD--LPGH-ADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeeccc--CCCC-CceEEEEEecCCCceeecCCCceEEEeec
Confidence            89999999999999999999999999999999998877  8899 555799999999999 8999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.3e-45  Score=308.28  Aligned_cols=281  Identities=16%  Similarity=0.189  Sum_probs=249.7

Q ss_pred             CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecC-cccccccCceEE
Q 014154           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQ-REESSSRSRTLL  127 (430)
Q Consensus        49 ~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~  127 (430)
                      +.++  ....|  +++++.||||+.+|.++||+..+...+.+|.+|        ...+.++.|.+.. .       ..++
T Consensus       175 ~rPi--s~~~f--S~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH--------~~~v~~~~fhP~~~~-------~~la  235 (459)
T KOG0272|consen  175 TRPI--SGCSF--SRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGH--------TSRVGAAVFHPVDSD-------LNLA  235 (459)
T ss_pred             CCcc--eeeEe--ecCCCeEEEeecCCceeEeecCCcceeEEEecc--------ccceeeEEEccCCCc-------ccee
Confidence            4453  34444  667889999999999999999999888888875        3478888888874 3       5899


Q ss_pred             EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC
Q 014154          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (430)
Q Consensus       128 ~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  207 (430)
                      +|+.||++++|.+....        .+.-+. .|...|..++|+|+|++|++++.|.+-++||++++..+....+|.   
T Consensus       236 t~s~Dgtvklw~~~~e~--------~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs---  303 (459)
T KOG0272|consen  236 TASADGTVKLWKLSQET--------PLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHS---  303 (459)
T ss_pred             eeccCCceeeeccCCCc--------chhhhh-cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccc---
Confidence            99999999999987543        333333 577899999999999999999999999999999998887777765   


Q ss_pred             CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (430)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~  287 (430)
                            ..|.+++|  .+||.++++|+.|..-+|||++++++ +..+.+|..+|.+|+|+|+|..|++|+.|++++|||+
T Consensus       304 ------~~v~~iaf--~~DGSL~~tGGlD~~~RvWDlRtgr~-im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL  374 (459)
T KOG0272|consen  304 ------KGVFSIAF--QPDGSLAATGGLDSLGRVWDLRTGRC-IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL  374 (459)
T ss_pred             ------cccceeEe--cCCCceeeccCccchhheeecccCcE-EEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence                  67999999  89999999999999999999999885 8899999999999999999999999999999999999


Q ss_pred             cCCeEEeeeeCCCCCCeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC
Q 014154          288 RTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD  365 (430)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~  365 (430)
                      +..+.++++.+| ..-|+.+.|+| .|.+|+|++.|++++||...+++++..  +.|| ...|.+++.++|+.+ ++++.
T Consensus       375 R~r~~ly~ipAH-~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ks--LaGH-e~kV~s~Dis~d~~~i~t~s~  450 (459)
T KOG0272|consen  375 RMRSELYTIPAH-SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKS--LAGH-EGKVISLDISPDSQAIATSSF  450 (459)
T ss_pred             cccccceecccc-cchhhheEecccCCeEEEEcccCcceeeecCCCcccchh--hcCC-ccceEEEEeccCCceEEEecc
Confidence            999999999999 99999999999 778999999999999999999999999  8899 566799999999999 99999


Q ss_pred             CCceEecC
Q 014154          366 APMLEIQN  373 (430)
Q Consensus       366 d~~i~~~~  373 (430)
                      |.++++|.
T Consensus       451 DRT~KLW~  458 (459)
T KOG0272|consen  451 DRTIKLWR  458 (459)
T ss_pred             Cceeeecc
Confidence            99999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-42  Score=287.51  Aligned_cols=293  Identities=11%  Similarity=0.131  Sum_probs=250.8

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      .+...+.+|..+  +++..|  +|+|.+|++|+.|.++++||+.+..++.+.++|        ...+.++.|.+...   
T Consensus       106 rCssS~~GH~e~--Vl~~~f--sp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH--------~~WVlcvawsPDgk---  170 (480)
T KOG0271|consen  106 RCSSSIAGHGEA--VLSVQF--SPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGH--------KNWVLCVAWSPDGK---  170 (480)
T ss_pred             eeccccCCCCCc--EEEEEe--cCCCceEEecCCCceEEeeccCCCCcceeecCC--------ccEEEEEEECCCcc---
Confidence            444567789888  555666  778999999999999999999999999998875        45888888777654   


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEECCCC
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKC  194 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~  194 (430)
                           .+++++.+|++.+|+......       ..+.+. .|...|++++|.|     ..++|++++.||.|+|||+..+
T Consensus       171 -----~iASG~~dg~I~lwdpktg~~-------~g~~l~-gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~  237 (480)
T KOG0271|consen  171 -----KIASGSKDGSIRLWDPKTGQQ-------IGRALR-GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG  237 (480)
T ss_pred             -----hhhccccCCeEEEecCCCCCc-------cccccc-CcccceeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence                 899999999999998654432       222332 6889999999976     5679999999999999999999


Q ss_pred             eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEec-------
Q 014154          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE-------  267 (430)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s-------  267 (430)
                      .++..+.+|.         ..|+|+.|  . ...+|++|+.|++|++|+...+. ..+.+++|...|+.++++       
T Consensus       238 ~~~~~lsgHT---------~~VTCvrw--G-G~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRt  304 (480)
T KOG0271|consen  238 TCVRTLSGHT---------ASVTCVRW--G-GEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRT  304 (480)
T ss_pred             eEEEEeccCc---------cceEEEEE--c-CCceEEecCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhc
Confidence            9999999986         78999999  3 34599999999999999999865 588999999999999877       


Q ss_pred             ----CCCC-------------------------EEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          268 ----PDSF-------------------------NIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       268 ----p~~~-------------------------~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                          |.++                         .|++|+.|.++.+|+.... +++..+.+| ..-|+.+.||||++++|
T Consensus       305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~r~IA  383 (480)
T KOG0271|consen  305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDGRYIA  383 (480)
T ss_pred             cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCccEEE
Confidence                2233                         4999999999999997644 578899998 89999999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       318 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      +++.|..|++||.++|+.+.+  ++||... |+.++|+.|.++ ++++.|.++++|+....
T Consensus       384 SaSFDkSVkLW~g~tGk~las--fRGHv~~-VYqvawsaDsRLlVS~SkDsTLKvw~V~tk  441 (480)
T KOG0271|consen  384 SASFDKSVKLWDGRTGKFLAS--FRGHVAA-VYQVAWSADSRLLVSGSKDSTLKVWDVRTK  441 (480)
T ss_pred             EeecccceeeeeCCCcchhhh--hhhccce-eEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence            999999999999999999999  7899655 699999999999 99999999999998653

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2e-41  Score=286.64  Aligned_cols=271  Identities=15%  Similarity=0.156  Sum_probs=241.9

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ...++||+-+|.++||+....     ..+.+|.+|...+..+.|.+..  ++.-||+++.||++++|++.+..++..+.+
T Consensus       187 s~~laT~swsG~~kvW~~~~~-----~~~~~l~gH~~~v~~~~fhP~~--~~~~lat~s~Dgtvklw~~~~e~~l~~l~g  259 (459)
T KOG0272|consen  187 SKHLATGSWSGLVKVWSVPQC-----NLLQTLRGHTSRVGAAVFHPVD--SDLNLATASADGTVKLWKLSQETPLQDLEG  259 (459)
T ss_pred             CCeEEEeecCCceeEeecCCc-----ceeEEEeccccceeeEEEccCC--CccceeeeccCCceeeeccCCCcchhhhhc
Confidence            378999999999999999997     7889999999997766665532  255799999999999999998888888877


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                      |        ...+..+.|.+...        .+.+++.|.+-++|++....         .-+..-.|...|.+++|+|+
T Consensus       260 H--------~~RVs~VafHPsG~--------~L~TasfD~tWRlWD~~tk~---------ElL~QEGHs~~v~~iaf~~D  314 (459)
T KOG0272|consen  260 H--------LARVSRVAFHPSGK--------FLGTASFDSTWRLWDLETKS---------ELLLQEGHSKGVFSIAFQPD  314 (459)
T ss_pred             c--------hhhheeeeecCCCc--------eeeecccccchhhcccccch---------hhHhhcccccccceeEecCC
Confidence            5        34777777766554        89999999999999987553         22334478899999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      |.++++|+.|..-+|||+++++++..+.+|.         ..|.+++|  +|+|..|+||+.|++++|||++.. ..+.+
T Consensus       315 GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~---------k~I~~V~f--sPNGy~lATgs~Dnt~kVWDLR~r-~~ly~  382 (459)
T KOG0272|consen  315 GSLAATGGLDSLGRVWDLRTGRCIMFLAGHI---------KEILSVAF--SPNGYHLATGSSDNTCKVWDLRMR-SELYT  382 (459)
T ss_pred             CceeeccCccchhheeecccCcEEEEecccc---------cceeeEeE--CCCceEEeecCCCCcEEEeeeccc-cccee
Confidence            9999999999999999999999999999876         77999999  999999999999999999999974 45899


Q ss_pred             EeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154          254 FDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd  329 (430)
                      +.+|..-|+.+.|+| .|.+|++++.|++++||..++.++++.+.|| .+.|.+++.+|++.++++++.|.++++|.
T Consensus       383 ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGH-e~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  383 IPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGH-EGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCC-ccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999999999 6799999999999999999999999999999 99999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-38  Score=258.03  Aligned_cols=292  Identities=15%  Similarity=0.144  Sum_probs=247.1

Q ss_pred             eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      ....+++|...|..  +-|  .+|.++|++++.||.+.|||.-+....+.++.-        ...++...+.+..     
T Consensus        47 ~rr~LkGH~~Ki~~--~~w--s~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~--------s~WVMtCA~sPSg-----  109 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYA--MDW--STDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP--------SSWVMTCAYSPSG-----  109 (343)
T ss_pred             eEEEecccccceee--eEe--cCCcCeEEeeccCCeEEEEEcccccceeEEecC--------ceeEEEEEECCCC-----
Confidence            34678999999554  444  667889999999999999998877666665541        1366655555443     


Q ss_pred             ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEe--eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 014154          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW--NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (430)
Q Consensus       121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  198 (430)
                         ..++.++.|+...||.+.+..     .++.+++-  -..|.+.+.|+.|-+ ...|++++.|.+..+||+++++.+.
T Consensus       110 ---~~VAcGGLdN~Csiy~ls~~d-----~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~  180 (343)
T KOG0286|consen  110 ---NFVACGGLDNKCSIYPLSTRD-----AEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ  180 (343)
T ss_pred             ---CeEEecCcCceeEEEeccccc-----ccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEE
Confidence               478888999999999987442     23333332  346788999999986 6788899999999999999999999


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                      .+.+|.         ..|.++.+  +| +++.+++|+.|+..++||++.+. .++.|.+|++.|+++.|.|+|.-+++|+
T Consensus       181 ~f~GH~---------gDV~slsl--~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~afatGS  248 (343)
T KOG0286|consen  181 VFHGHT---------GDVMSLSL--SPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGDAFATGS  248 (343)
T ss_pred             EecCCc---------ccEEEEec--CCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCCeeeecC
Confidence            999886         67999999  66 89999999999999999999976 5999999999999999999999999999


Q ss_pred             CCCcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          278 GSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       278 ~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      .|++.++||+|..+.+..|... ...+|++++||..|++|++|..|.++.+||.-.++.+..  +.|| ...|.++..+|
T Consensus       249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~--L~GH-eNRvScl~~s~  325 (343)
T KOG0286|consen  249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV--LAGH-ENRVSCLGVSP  325 (343)
T ss_pred             CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE--eecc-CCeeEEEEECC
Confidence            9999999999999988888742 245899999999999999999999999999999998888  7789 66789999999


Q ss_pred             cccc-cccCCCCceEecC
Q 014154          357 KEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       357 ~g~~-~~~~~d~~i~~~~  373 (430)
                      ||.. ++++.|.+++||.
T Consensus       326 DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  326 DGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCcEEEecchhHheeecC
Confidence            9999 9999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-38  Score=254.59  Aligned_cols=296  Identities=12%  Similarity=0.174  Sum_probs=239.8

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-----CcccceeeccCCCCCCCCCCceEEEEEeec
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAISNAGDSGAQPEDDGIVGLHLFKR  114 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  114 (430)
                      .+..++.+|++.|..++....   +-+.|++++.|.++.+|++..     |.+++.+.+|        ...+..+.+...
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH--------sH~v~dv~~s~d   74 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH--------SHFVSDVVLSSD   74 (315)
T ss_pred             eeeeeecCCCceEEEEEeecC---CCceEEEcccceEEEEEEeccCccccCceeeeeecc--------ceEecceEEccC
Confidence            456788999999888887774   236799999999999999853     4445555553        335555555544


Q ss_pred             CcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 014154          115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC  194 (430)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  194 (430)
                      .        .+.++++.|+.+++|++..+.        +.+.|. .|...|.+++|+++...+++|+.|.+|.+|+....
T Consensus        75 g--------~~alS~swD~~lrlWDl~~g~--------~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~  137 (315)
T KOG0279|consen   75 G--------NFALSASWDGTLRLWDLATGE--------STRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV  137 (315)
T ss_pred             C--------ceEEeccccceEEEEEecCCc--------EEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence            3        489999999999999997653        455554 78899999999999999999999999999998654


Q ss_pred             eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEE
Q 014154          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY  274 (430)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~  274 (430)
                       +..++.....       .+||.|+.|.|+++..+|++++.|++|++||+++.+ ....+.+|++.++.+++||||.+++
T Consensus       138 -ck~t~~~~~~-------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslca  208 (315)
T KOG0279|consen  138 -CKYTIHEDSH-------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCA  208 (315)
T ss_pred             -EEEEEecCCC-------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEe
Confidence             4444443321       289999999555557899999999999999999855 5788999999999999999999999


Q ss_pred             EEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc------cce
Q 014154          275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL------NEV  348 (430)
Q Consensus       275 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~  348 (430)
                      +|+.||.+.+||++.++.++.+.+  ...|.+++|+|+..+|+.+ .+..|+|||+.++..+..+.++...      ...
T Consensus       209 sGgkdg~~~LwdL~~~k~lysl~a--~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~  285 (315)
T KOG0279|consen  209 SGGKDGEAMLWDLNEGKNLYSLEA--FDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI  285 (315)
T ss_pred             cCCCCceEEEEEccCCceeEeccC--CCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcE
Confidence            999999999999999999888876  6899999999998776665 4556999999999988876544321      234


Q ss_pred             EEeeeccccccc-cccCCCCceEecCCC
Q 014154          349 VFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       349 v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      ..+++|++||.. +++-.|+.|++|...
T Consensus       286 clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  286 CLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            678999999998 888899999999753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=246.23  Aligned_cols=295  Identities=14%  Similarity=0.152  Sum_probs=243.5

Q ss_pred             CCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc--
Q 014154           10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--   87 (430)
Q Consensus        10 ~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~--   87 (430)
                      |..++..|++++.|.+||+|.+.+|     .+..++...+..|..+.+    .|++++||+++. ..|++||+.++.+  
T Consensus         6 ~~d~~viLvsA~YDhTIRfWqa~tG-----~C~rTiqh~dsqVNrLei----Tpdk~~LAaa~~-qhvRlyD~~S~np~P   75 (311)
T KOG0315|consen    6 PTDDPVILVSAGYDHTIRFWQALTG-----ICSRTIQHPDSQVNRLEI----TPDKKDLAAAGN-QHVRLYDLNSNNPNP   75 (311)
T ss_pred             CCCCceEEEeccCcceeeeeehhcC-----eEEEEEecCccceeeEEE----cCCcchhhhccC-CeeEEEEccCCCCCc
Confidence            4447889999999999999999999     898888877777655544    667778888764 7899999987764  


Q ss_pred             cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE
Q 014154           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (430)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~  167 (430)
                      +.+|.+        +.+.++.+-|-...        ..+.++++||+++||++....        .-+.|.  +..+|.+
T Consensus        76 v~t~e~--------h~kNVtaVgF~~dg--------rWMyTgseDgt~kIWdlR~~~--------~qR~~~--~~spVn~  129 (311)
T KOG0315|consen   76 VATFEG--------HTKNVTAVGFQCDG--------RWMYTGSEDGTVKIWDLRSLS--------CQRNYQ--HNSPVNT  129 (311)
T ss_pred             eeEEec--------cCCceEEEEEeecC--------eEEEecCCCceEEEEeccCcc--------cchhcc--CCCCcce
Confidence            555555        34567766665544        488999999999999987421        334444  4589999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC
Q 014154          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (430)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  247 (430)
                      +..+|+...|++|..+|.|++||+.+..+...+.....        ..|.++..  .|+|.+++.+...|..++|++-+.
T Consensus       130 vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~--------~~i~sl~v--~~dgsml~a~nnkG~cyvW~l~~~  199 (311)
T KOG0315|consen  130 VVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD--------TSIQSLTV--MPDGSMLAAANNKGNCYVWRLLNH  199 (311)
T ss_pred             EEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC--------cceeeEEE--cCCCcEEEEecCCccEEEEEccCC
Confidence            99999999999999999999999988766655544321        56889999  899999999999999999998753


Q ss_pred             C-----cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154          248 R-----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       248 ~-----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                      .     .|+..++.|+.-+..+.+|||+++|++++.|.+++||+..+. +....+.+| ...+...+||.+|.||++|+.
T Consensus       200 ~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTass  278 (311)
T KOG0315|consen  200 QTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASS  278 (311)
T ss_pred             CccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCC
Confidence            2     467788999999999999999999999999999999999887 667778888 899999999999999999999


Q ss_pred             CCcEEEEECCCCceeeEEEeeccccceEEeeec
Q 014154          322 DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF  354 (430)
Q Consensus       322 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  354 (430)
                      |+.+++|++..++.+..  ..+|.... .+++.
T Consensus       279 d~~~rlW~~~~~k~v~q--y~gh~K~~-vc~~l  308 (311)
T KOG0315|consen  279 DHTARLWDLSAGKEVRQ--YQGHHKAA-VCVAL  308 (311)
T ss_pred             CCceeecccccCceeee--cCCccccc-EEEEe
Confidence            99999999999999888  66776654 44443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.4e-38  Score=286.94  Aligned_cols=341  Identities=13%  Similarity=0.124  Sum_probs=260.6

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc-cceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-RVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~-~~~~~~   93 (430)
                      ..|++|+.||.|+|||+..+     .+...|.+|.+.+..+.|..  ++.-.+|++|..|+++++||+.+... +..+..
T Consensus       118 ~LlAtggaD~~v~VWdi~~~-----~~th~fkG~gGvVssl~F~~--~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~  190 (775)
T KOG0319|consen  118 TLLATGGADGRVKVWDIKNG-----YCTHSFKGHGGVVSSLLFHP--HWNRWLLASGATDGTVRVWNLNDKRTCLHTMIL  190 (775)
T ss_pred             ceEEeccccceEEEEEeeCC-----EEEEEecCCCceEEEEEeCC--ccchhheeecCCCceEEEEEcccCchHHHHHHh
Confidence            67899999999999999998     89999999999976666655  55556788899999999999875443 222221


Q ss_pred             c----CCCCCCC--------------------------------------------------------------------
Q 014154           94 A----GDSGAQP--------------------------------------------------------------------  101 (430)
Q Consensus        94 ~----~~~~~~~--------------------------------------------------------------------  101 (430)
                      |    ..+.+.+                                                                    
T Consensus       191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~  270 (775)
T KOG0319|consen  191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG  270 (775)
T ss_pred             hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence            1    0011100                                                                    


Q ss_pred             ---------------------------------------------------CCCceEEEEEeecCcccccccCceEEEEc
Q 014154          102 ---------------------------------------------------EDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (430)
Q Consensus       102 ---------------------------------------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  130 (430)
                                                                         ..+.|..++++..+.       ..++.++
T Consensus       271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~-------~~laVAT  343 (775)
T KOG0319|consen  271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEE-------SHLAVAT  343 (775)
T ss_pred             hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCcc-------ceEEEEe
Confidence                                                               111122233333322       4555566


Q ss_pred             cCCeeEEEEeeecCc----------------------cccCCCcceEEeeec--------------CCCceEEEEEcCC-
Q 014154          131 TKGKASMRSIEVTKV----------------------SAESSCSTVKSWNVC--------------ASGTIAFSKVDIS-  173 (430)
Q Consensus       131 ~~g~~~v~~~~~~~~----------------------~~~~~~~~i~~~~~~--------------~~~~i~~~~~~~~-  173 (430)
                      ..+.++++.+.....                      ++++.|..+++|.+.              |...|.+++++.. 
T Consensus       344 Ns~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~  423 (775)
T KOG0319|consen  344 NSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG  423 (775)
T ss_pred             CCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence            666666665432221                      567788899999763              3456888888664 


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      ..+|++++.|+++++|++...+................|...|+++++  +|+..+|+||+.|.+.+||++.... ...+
T Consensus       424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai--a~ndkLiAT~SqDktaKiW~le~~~-l~~v  500 (775)
T KOG0319|consen  424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI--APNDKLIATGSQDKTAKIWDLEQLR-LLGV  500 (775)
T ss_pred             ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe--cCCCceEEecccccceeeecccCce-EEEE
Confidence            467889999999999998762221110000001112234567999999  8999999999999999999999644 6889


Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      +.+|...|.|+.|+|..+.++++|.|.+|+||.+.+..++.+|.|| ...|..+.|-.++..|++++.||.|++|+++++
T Consensus       501 LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH-~~aVlra~F~~~~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  501 LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGH-TSAVLRASFIRNGKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             eeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCc-cceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence            9999999999999999999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             ceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          334 QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .++.+  +.+| ...||+++-++.+.+ ++|+.||.|.+|.-..
T Consensus       580 eC~~t--lD~H-~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  580 ECEMT--LDAH-NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             hhhhh--hhhc-cceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            99999  7889 556799999999988 9999999999997665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=9.5e-37  Score=265.11  Aligned_cols=337  Identities=16%  Similarity=0.175  Sum_probs=265.4

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      .|+|++||++|++|.+|+-..-     ++...++.|..-|.++.+    +|||.++|+.+.||+|.|||=.+|+.+..+.
T Consensus       159 RPfRi~T~sdDn~v~ffeGPPF-----KFk~s~r~HskFV~~VRy----sPDG~~Fat~gsDgki~iyDGktge~vg~l~  229 (603)
T KOG0318|consen  159 RPFRIATGSDDNTVAFFEGPPF-----KFKSSFREHSKFVNCVRY----SPDGSRFATAGSDGKIYIYDGKTGEKVGELE  229 (603)
T ss_pred             CceEEEeccCCCeEEEeeCCCe-----eeeecccccccceeeEEE----CCCCCeEEEecCCccEEEEcCCCccEEEEec
Confidence            3699999999999999986654     788889999998776666    6678899999999999999999999988887


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc------------------------ccc
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAE  148 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~------------------------~~~  148 (430)
                      .     ..+|.+.|.++.|.+...        ++++++.|.+++||++.....                        .+.
T Consensus       230 ~-----~~aHkGsIfalsWsPDs~--------~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItV  296 (603)
T KOG0318|consen  230 D-----SDAHKGSIFALSWSPDST--------QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITV  296 (603)
T ss_pred             C-----CCCccccEEEEEECCCCc--------eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEE
Confidence            4     346778999898887765        999999999999999876543                        222


Q ss_pred             CCCcceEEeee----------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-----------EeeCCCC---
Q 014154          149 SSCSTVKSWNV----------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-----------WTAKPPP---  204 (430)
Q Consensus       149 ~~~~~i~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-----------~~~~~~~---  204 (430)
                      +..|.+..++.          .|...|+++..+|++.+|++|+.||.|.-|+..++..-           ..+....   
T Consensus       297 Sl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~  376 (603)
T KOG0318|consen  297 SLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE  376 (603)
T ss_pred             EcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCc
Confidence            33444444443          25678999999999999999999999999998754211           0000000   


Q ss_pred             ---------------------CC--------CCCC-----------------------------cCCcceeEEEEeecCC
Q 014154          205 ---------------------KN--------SLGI-----------------------------FTPTWFTSAAFLSIDD  226 (430)
Q Consensus       205 ---------------------~~--------~~~~-----------------------------~~~~~v~~~~~~~~~~  226 (430)
                                           ..        +.++                             ...-...++++  +|+
T Consensus       377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv--~~~  454 (603)
T KOG0318|consen  377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAV--SPD  454 (603)
T ss_pred             EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEE--cCC
Confidence                                 00        0000                             00012445566  889


Q ss_pred             CCEEEEEeCCCcEEEEECCCCC-cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154          227 HRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (430)
Q Consensus       227 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  305 (430)
                      +..+++|+.|+.|+||.+.... .....+..|.++|++++||||+.+|+++...+.+.+||+.+.+.....-+.|.+.|.
T Consensus       455 ~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~  534 (603)
T KOG0318|consen  455 GSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN  534 (603)
T ss_pred             CCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE
Confidence            9999999999999999998754 234456679999999999999999999999999999999998875444453499999


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      +++|+|+..++|+|+.|-.|.||+++.....-.+ ..+|... |+.+.|-.+..+++.+.|..|++|+..
T Consensus       535 ~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~i-knAH~~g-Vn~v~wlde~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  535 CVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIII-KNAHLGG-VNSVAWLDESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             EEEeCCCceEEEeccccceEEEEEccChhhheEe-ccccccC-ceeEEEecCceEEeccCcceeEEeccc
Confidence            9999999999999999999999999865544222 4567555 899999999999999999999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.7e-36  Score=239.86  Aligned_cols=274  Identities=14%  Similarity=0.223  Sum_probs=227.9

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      -+|++++.|.+|++|...+|.+..+++.        .+..+..+.+.+..         ..+++.....+++|++.... 
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh--------~dsqVNrLeiTpdk---------~~LAaa~~qhvRlyD~~S~n-   72 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQH--------PDSQVNRLEITPDK---------KDLAAAGNQHVRLYDLNSNN-   72 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEec--------CccceeeEEEcCCc---------chhhhccCCeeEEEEccCCC-
Confidence            4789999999999999999999999875        23466667766543         44555556679999987543 


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                           ..++..|+ .|.+.|..+.|..+|+.+++|+.||+++|||++...+.+.++..          ++|+++..  +|
T Consensus        73 -----p~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~----------spVn~vvl--hp  134 (311)
T KOG0315|consen   73 -----PNPVATFE-GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN----------SPVNTVVL--HP  134 (311)
T ss_pred             -----CCceeEEe-ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC----------CCcceEEe--cC
Confidence                 34777777 67789999999999999999999999999999986555554432          77999999  78


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC------eEEeeeeCC
Q 014154          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------KLLGCFIGK  299 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~  299 (430)
                      +...|++|..+|.|++||+.+.......+.....+|.++...|||.+|+.+...|..++|++-+.      +++.+|+.|
T Consensus       135 nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah  214 (311)
T KOG0315|consen  135 NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH  214 (311)
T ss_pred             CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence            88999999999999999999865433444445578999999999999999999999999998754      356778888


Q ss_pred             CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154          300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       300 ~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                       .+.+..+.+||++++|+++|.|.+++||++.+. ......+.+| ...+++++||.||.+ ++++.|+.+++|+.....
T Consensus       215 -~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  215 -NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGH-QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             -cceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecC-CceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence             889999999999999999999999999999887 3344447788 678899999999999 999999999999987744

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-37  Score=256.92  Aligned_cols=291  Identities=17%  Similarity=0.258  Sum_probs=248.5

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      .+.+.+.+|..++.  ..-+  +|+-..+++++.|++|++||..++++...+++|.        +.+..+.+-...    
T Consensus        99 ~l~~~l~g~r~~vt--~v~~--hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt--------~sv~di~~~a~G----  162 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVT--RVIF--HPSEALVVSASEDATIKVFDTETGELERSLRGHT--------DSVFDISFDASG----  162 (406)
T ss_pred             Cchhhhhcccccee--eeee--ccCceEEEEecCCceEEEEEccchhhhhhhhccc--------cceeEEEEecCc----
Confidence            45566667777644  3444  8888889999999999999999999988888753        356666665443    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                          ..+++++.|-.+.+|+......       .++.. ..|...|.+++|-|.+++|++++.|.+|+.|++.++.++.+
T Consensus       163 ----k~l~tcSsDl~~~LWd~~~~~~-------c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t  230 (406)
T KOG0295|consen  163 ----KYLATCSSDLSAKLWDFDTFFR-------CIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT  230 (406)
T ss_pred             ----cEEEecCCccchhheeHHHHHH-------HHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe
Confidence                3888888888888888754321       22222 35677899999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCC----------
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD----------  269 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~----------  269 (430)
                      +.+|.         .||..++.  +.||.++++++.|.+|++|-+.+.. ....+..|+.+|.|++|.|.          
T Consensus       231 ~~~h~---------ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~-~k~~lR~hEh~vEci~wap~~~~~~i~~at  298 (406)
T KOG0295|consen  231 FPGHS---------EWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQ-CKAELREHEHPVECIAWAPESSYPSISEAT  298 (406)
T ss_pred             ccCch---------HhEEEEEe--cCCeeEEEecCCCceEEEEEeccch-hhhhhhccccceEEEEecccccCcchhhcc
Confidence            99976         79999999  8999999999999999999999865 46788899999999999762          


Q ss_pred             -----CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc
Q 014154          270 -----SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH  344 (430)
Q Consensus       270 -----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  344 (430)
                           ++++.+++.|++|++||+.++.++.++.+| ...|..++|+|.|+||+++.+|+++++||++++++..+  +..|
T Consensus       299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~--~~ah  375 (406)
T KOG0295|consen  299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKT--LEAH  375 (406)
T ss_pred             CCCCCccEEEeecccceEEEEeccCCeEEEEEecc-cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeec--cCCC
Confidence                 369999999999999999999999999999 99999999999999999999999999999999999998  4456


Q ss_pred             ccceEEeeeccccccc-cccCCCCceEecCC
Q 014154          345 LNEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       345 ~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                       ...+++++|+.+-.+ ++|+-|..+++|..
T Consensus       376 -~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  376 -EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             -cceeEEEecCCCCceEEeccccceeeeeec
Confidence             667899999999988 99999999999964

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4e-38  Score=265.53  Aligned_cols=282  Identities=15%  Similarity=0.177  Sum_probs=242.3

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      +-.+.|  .|+|+.|++|+..|.+.+|+.........        ...|+..+.++.|.....        .++++..+|
T Consensus        99 V~~v~W--tPeGRRLltgs~SGEFtLWNg~~fnFEti--------lQaHDs~Vr~m~ws~~g~--------wmiSgD~gG  160 (464)
T KOG0284|consen   99 VNVVRW--TPEGRRLLTGSQSGEFTLWNGTSFNFETI--------LQAHDSPVRTMKWSHNGT--------WMISGDKGG  160 (464)
T ss_pred             eeeEEE--cCCCceeEeecccccEEEecCceeeHHHH--------hhhhcccceeEEEccCCC--------EEEEcCCCc
Confidence            445556  89999999999999999998743322222        224667888888776654        899999999


Q ss_pred             eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  213 (430)
                      .+++|....+         .+++....|...|++++|+|+...+++++.||+|+|||....+....+.+|.         
T Consensus       161 ~iKyWqpnmn---------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg---------  222 (464)
T KOG0284|consen  161 MIKYWQPNMN---------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG---------  222 (464)
T ss_pred             eEEecccchh---------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC---------
Confidence            9999997755         5666776677899999999999999999999999999998888777777764         


Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~  293 (430)
                      -.|.+++|  +|...+|++++.|..|++||.+++.+ +.++..|...|..+.|+|++++|++++.|..+++||+++.+.+
T Consensus       223 wdVksvdW--HP~kgLiasgskDnlVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  223 WDVKSVDW--HPTKGLIASGSKDNLVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             CCcceecc--CCccceeEEccCCceeEeecCCCcch-hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence            56999999  78888999999999999999999775 8899999999999999999999999999999999999998999


Q ss_pred             eeeeCCCCCCeEEEEecCC-CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEe
Q 014154          294 GCFIGKCSGSIRSIARHPT-LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEI  371 (430)
Q Consensus       294 ~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~  371 (430)
                      .++++| ...|+++.|+|- ..+|.+|+.||.|..|.+...+++..+ -.+| ...|++++|+|-|.+ ++|+.|.++++
T Consensus       300 ~~~r~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i-~~AH-d~~iwsl~~hPlGhil~tgsnd~t~rf  376 (464)
T KOG0284|consen  300 FTYRGH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI-PPAH-DGEIWSLAYHPLGHILATGSNDRTVRF  376 (464)
T ss_pred             HHhhcc-hhhheeeccccccccceeeccCCCceEEEeccccccccCC-Cccc-ccceeeeeccccceeEeecCCCcceee
Confidence            999999 899999999994 468899999999999999866776664 3456 566799999999999 99999999999


Q ss_pred             cCCCCC
Q 014154          372 QNGNDT  377 (430)
Q Consensus       372 ~~~~~~  377 (430)
                      |..+-.
T Consensus       377 w~r~rp  382 (464)
T KOG0284|consen  377 WTRNRP  382 (464)
T ss_pred             eccCCC
Confidence            987653

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=9.4e-36  Score=241.02  Aligned_cols=273  Identities=17%  Similarity=0.222  Sum_probs=229.4

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      -++++++.||.+.|||.-+.     ...+.+......  +++..+  +|.|+++|+|+-|+...||++.+.+........
T Consensus        68 r~ivSaSqDGklIvWDs~Tt-----nK~haipl~s~W--VMtCA~--sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~  138 (343)
T KOG0286|consen   68 RRIVSASQDGKLIVWDSFTT-----NKVHAIPLPSSW--VMTCAY--SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVS  138 (343)
T ss_pred             CeEEeeccCCeEEEEEcccc-----cceeEEecCcee--EEEEEE--CCCCCeEEecCcCceeEEEecccccccccceee
Confidence            57899999999999998875     344444444444  777777  899999999999999999999754211111100


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-C
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~  173 (430)
                        -.+.+|...+.+..+.+ +        +.+++++.|.+..+|+++...        .+..|. .|.+.|.+++++| +
T Consensus       139 --r~l~gHtgylScC~f~d-D--------~~ilT~SGD~TCalWDie~g~--------~~~~f~-GH~gDV~slsl~p~~  198 (343)
T KOG0286|consen  139 --RELAGHTGYLSCCRFLD-D--------NHILTGSGDMTCALWDIETGQ--------QTQVFH-GHTGDVMSLSLSPSD  198 (343)
T ss_pred             --eeecCccceeEEEEEcC-C--------CceEecCCCceEEEEEcccce--------EEEEec-CCcccEEEEecCCCC
Confidence              01234556777777776 2        599999999999999998654        566676 8899999999999 9


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      ++.+++|+-|+..++||++.+.+...+.+|.         ..|+++.|  .|+|.-|++|+.|++.++||++..++ +..
T Consensus       199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghe---------sDINsv~f--fP~G~afatGSDD~tcRlyDlRaD~~-~a~  266 (343)
T KOG0286|consen  199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHE---------SDINSVRF--FPSGDAFATGSDDATCRLYDLRADQE-LAV  266 (343)
T ss_pred             CCeEEecccccceeeeeccCcceeEeecccc---------cccceEEE--ccCCCeeeecCCCceeEEEeecCCcE-Eee
Confidence            9999999999999999999999999999987         77999999  79999999999999999999998654 555


Q ss_pred             Eee--cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154          254 FDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       254 ~~~--~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd  329 (430)
                      +..  -..+|++++||..|++|++|..|..+.+||.-.++.+..+.+| ..+|+++..+|||.-|++|+.|.+++||.
T Consensus       267 ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  267 YSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEEEECCCCcEEEecchhHheeecC
Confidence            543  2358999999999999999999999999999999999999999 99999999999999999999999999994

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.3e-37  Score=280.71  Aligned_cols=207  Identities=19%  Similarity=0.296  Sum_probs=194.8

Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC
Q 014154          158 NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (430)
Q Consensus       158 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg  237 (430)
                      ...|.++|....|+|+.++|++++.|+++++|.+.+..++..+++|.         .+|..+.|  +|.|.++||++.|+
T Consensus       447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~---------~PVwdV~F--~P~GyYFatas~D~  515 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHL---------APVWDVQF--APRGYYFATASHDQ  515 (707)
T ss_pred             eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCC---------cceeeEEe--cCCceEEEecCCCc
Confidence            45899999999999999999999999999999999999998888875         78999999  89999999999999


Q ss_pred             cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      +-++|.... ..|.+.+.+|-+.|.|+.|+|+..|+++|+.|.+|++||..+|..++.|.|| .++|.+++|||+|++|+
T Consensus       516 tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp~Gr~La  593 (707)
T KOG0263|consen  516 TARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFSPCGRYLA  593 (707)
T ss_pred             eeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEcCCCceEe
Confidence            999999998 4579999999999999999999999999999999999999999999999998 99999999999999999


Q ss_pred             EEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCccc
Q 014154          318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQED  380 (430)
Q Consensus       318 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~~~  380 (430)
                      +|+.||.|.+||+.++.++..  +.+| .+.+.++.|+.||.+ ++++.|++|++||.......
T Consensus       594 Sg~ed~~I~iWDl~~~~~v~~--l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  594 SGDEDGLIKIWDLANGSLVKQ--LKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             ecccCCcEEEEEcCCCcchhh--hhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            999999999999999999988  7788 777899999999999 99999999999998765443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-35  Score=238.44  Aligned_cols=277  Identities=10%  Similarity=0.101  Sum_probs=226.4

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      .+..+++++.|.++.+|++.......-..+..|.+|+..+.-+++    ++||++.++++.|+++++||+.+++....|.
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~----s~dg~~alS~swD~~lrlWDl~~g~~t~~f~  102 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVL----SSDGNFALSASWDGTLRLWDLATGESTRRFV  102 (315)
T ss_pred             CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEE----ccCCceEEeccccceEEEEEecCCcEEEEEE
Confidence            345689999999999999987544444567889999998776666    4578899999999999999999999888887


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      +|        ...+.++.+.+...        ++++++.|.++.+|++...-        ...+-+..+...|.|+.|+|
T Consensus       103 GH--------~~dVlsva~s~dn~--------qivSGSrDkTiklwnt~g~c--------k~t~~~~~~~~WVscvrfsP  158 (315)
T KOG0279|consen  103 GH--------TKDVLSVAFSTDNR--------QIVSGSRDKTIKLWNTLGVC--------KYTIHEDSHREWVSCVRFSP  158 (315)
T ss_pred             ec--------CCceEEEEecCCCc--------eeecCCCcceeeeeeecccE--------EEEEecCCCcCcEEEEEEcC
Confidence            75        44777777766554        99999999999999975322        23333333367899999999


Q ss_pred             C--CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154          173 S--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       173 ~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      +  ..+|++++.|++|++||+++.+....+.+|.         ..++.+++  +|||.+.++|+.||.+.+||++.++. 
T Consensus       159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~---------~~v~t~~v--SpDGslcasGgkdg~~~LwdL~~~k~-  226 (315)
T KOG0279|consen  159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS---------GYVNTVTV--SPDGSLCASGGKDGEAMLWDLNEGKN-  226 (315)
T ss_pred             CCCCcEEEEccCCceEEEEccCCcchhhcccccc---------ccEEEEEE--CCCCCEEecCCCCceEEEEEccCCce-
Confidence            7  7899999999999999999988888777765         78999999  99999999999999999999998765 


Q ss_pred             eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC--------CCCeEEEEecCCCCeEEEEeCC
Q 014154          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLD  322 (430)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--------~~~v~~i~~~~~~~~l~s~~~d  322 (430)
                      +..+. |...|.+++|+|+.-.|+.+ .+..|+|||+.++.++..+....        .....+++|+++|..|++|-.|
T Consensus       227 lysl~-a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td  304 (315)
T KOG0279|consen  227 LYSLE-AFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTD  304 (315)
T ss_pred             eEecc-CCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecC
Confidence            55554 67899999999998666655 45569999999998877665321        2245678999999999999999


Q ss_pred             CcEEEEECC
Q 014154          323 SYLRFWDIK  331 (430)
Q Consensus       323 g~i~iwd~~  331 (430)
                      +.|++|.+.
T Consensus       305 ~~irv~qv~  313 (315)
T KOG0279|consen  305 NVIRVWQVA  313 (315)
T ss_pred             CcEEEEEee
Confidence            999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-36  Score=250.81  Aligned_cols=293  Identities=14%  Similarity=0.256  Sum_probs=251.2

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      ++...+.+|.+.|.++++.    |...++++|+.|++|+|||+.+|++..++.+|        ...+..+.+.+...   
T Consensus       142 Kl~rVi~gHlgWVr~vavd----P~n~wf~tgs~DrtikIwDlatg~LkltltGh--------i~~vr~vavS~rHp---  206 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVD----PGNEWFATGSADRTIKIWDLATGQLKLTLTGH--------IETVRGVAVSKRHP---  206 (460)
T ss_pred             eehhhhhhccceEEEEeeC----CCceeEEecCCCceeEEEEcccCeEEEeecch--------hheeeeeeecccCc---
Confidence            4556677899998887774    45679999999999999999999998888764        23566677777665   


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                           ++++++.|+.+..|++....        .|+-|. .|-..|.|++.+|.-..|++|+.|.++++||+++...+..
T Consensus       207 -----YlFs~gedk~VKCwDLe~nk--------vIR~Yh-GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~  272 (460)
T KOG0285|consen  207 -----YLFSAGEDKQVKCWDLEYNK--------VIRHYH-GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHV  272 (460)
T ss_pred             -----eEEEecCCCeeEEEechhhh--------hHHHhc-cccceeEEEeccccceeEEecCCcceEEEeeecccceEEE
Confidence                 99999999999999998664        666665 7778999999999999999999999999999999999999


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (430)
                      +.+|.         ..|..+.+  .|-...+++|+.|++|++||++.++. ...+..|...+.+++.+|....+++++.|
T Consensus       273 l~GH~---------~~V~~V~~--~~~dpqvit~S~D~tvrlWDl~agkt-~~tlt~hkksvral~lhP~e~~fASas~d  340 (460)
T KOG0285|consen  273 LSGHT---------NPVASVMC--QPTDPQVITGSHDSTVRLWDLRAGKT-MITLTHHKKSVRALCLHPKENLFASASPD  340 (460)
T ss_pred             ecCCC---------CcceeEEe--ecCCCceEEecCCceEEEeeeccCce-eEeeecccceeeEEecCCchhhhhccCCc
Confidence            99987         77888888  67778899999999999999999775 77888899999999999999999998877


Q ss_pred             CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE---Eeeccc--cceEEeeec
Q 014154          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV---FLKQHL--NEVVFDSAF  354 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~--~~~v~~~~~  354 (430)
                      + |+-|++..+..+..+.+| .+-|+++..+.|+ ++++|+++|.+.+||.++|-..+..   ...|..  ...|++.+|
T Consensus       341 n-ik~w~~p~g~f~~nlsgh-~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~f  417 (460)
T KOG0285|consen  341 N-IKQWKLPEGEFLQNLSGH-NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCF  417 (460)
T ss_pred             c-ceeccCCccchhhccccc-cceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEee
Confidence            6 999999999999999998 8999999998887 7889999999999999988665543   122222  344789999


Q ss_pred             cccccc-cccCCCCceEecCCCC
Q 014154          355 ADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       355 s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ...|.. +++..|.+|++|..++
T Consensus       418 Dktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  418 DKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             cccCceEEeccCCcceEEEeccc
Confidence            999987 9999999999998766

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.7e-36  Score=248.48  Aligned_cols=319  Identities=14%  Similarity=0.101  Sum_probs=255.3

Q ss_pred             ccCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC
Q 014154            6 TLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL   83 (430)
Q Consensus         6 ~~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~   83 (430)
                      .+.+.+|.|  -.++||+.|..-.||+..++     .....+.+|..+|.++.|++    +|.|||+|+.+|.|+||...
T Consensus        66 svFavsl~P~~~l~aTGGgDD~AflW~~~~g-----e~~~eltgHKDSVt~~~Fsh----dgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTG-----EFAGELTGHKDSVTCCSFSH----DGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             ceEEEEeCCCCceEEecCCCceEEEEEccCC-----cceeEecCCCCceEEEEEcc----CceEEEecCCCccEEEEEcc
Confidence            334444543  56789999999999999998     68888999999988777766    67799999999999999999


Q ss_pred             CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154           84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG  163 (430)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~  163 (430)
                      ++.....+..        ....+.=+.|.+..        ..+++++.||.+.+|.+...        +..+++. .|+.
T Consensus       137 tg~~~~~~~~--------e~~dieWl~WHp~a--------~illAG~~DGsvWmw~ip~~--------~~~kv~~-Gh~~  191 (399)
T KOG0296|consen  137 TGGEQWKLDQ--------EVEDIEWLKWHPRA--------HILLAGSTDGSVWMWQIPSQ--------ALCKVMS-GHNS  191 (399)
T ss_pred             cCceEEEeec--------ccCceEEEEecccc--------cEEEeecCCCcEEEEECCCc--------ceeeEec-CCCC
Confidence            9887766642        01234334444422        48899999999999998642        3666776 6889


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      ++++=.|.|+|+.++++..||+|++||+.++.++..+.....        ...+++.+  +..+..++.|+.++.+++-.
T Consensus       192 ~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------~~~~~~~~--~~~~~~~~~g~~e~~~~~~~  261 (399)
T KOG0296|consen  192 PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------LELPCISL--NLAGSTLTKGNSEGVACGVN  261 (399)
T ss_pred             CcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc--------CcCCcccc--ccccceeEeccCCccEEEEc
Confidence            999999999999999999999999999999999988775431        33566777  67888899999999988888


Q ss_pred             CCCCCcceEEEe--------ecCCCeEEEEecC---CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          244 TSAQRRPVMSFD--------FRETPIKAVAEEP---DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       244 ~~~~~~~~~~~~--------~~~~~i~~~~~sp---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      ..+++. +....        .++..+.|+.+.|   .-.+.++|+.||+|.|||+...++...+. | ..+|..+.|-+ 
T Consensus       262 ~~sgKV-v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-h-e~~V~~l~w~~-  337 (399)
T KOG0296|consen  262 NGSGKV-VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-H-EDGVTKLKWLN-  337 (399)
T ss_pred             cccceE-EEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-C-CCceEEEEEcC-
Confidence            777653 33333        3444455555544   55788999999999999998877765554 4 77899999988 


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      ..+|++++.||.|+.||.++|+++.+  +.|| ...|.+++++|++++ ++++.|++.+||+.+
T Consensus       338 t~~l~t~c~~g~v~~wDaRtG~l~~~--y~GH-~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  338 TDYLLTACANGKVRQWDARTGQLKFT--YTGH-QMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             cchheeeccCceEEeeeccccceEEE--EecC-chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            67999999999999999999999998  7799 555799999999999 999999999999864

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=267.96  Aligned_cols=343  Identities=17%  Similarity=0.212  Sum_probs=245.2

Q ss_pred             CCCcceeeecCCCceEEEEccCCCCCcceeeeecCC-CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce
Q 014154           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (430)
Q Consensus        12 ~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~   90 (430)
                      |...+|+++.....+++|++..+     +++..|.. |+.++..  +.+  +|.|.+|++|+.||.|+|||+..+.++..
T Consensus        72 ~d~~~L~~a~rs~llrv~~L~tg-----k~irswKa~He~Pvi~--ma~--~~~g~LlAtggaD~~v~VWdi~~~~~th~  142 (775)
T KOG0319|consen   72 PDEEVLVTASRSQLLRVWSLPTG-----KLIRSWKAIHEAPVIT--MAF--DPTGTLLATGGADGRVKVWDIKNGYCTHS  142 (775)
T ss_pred             CCccEEEEeeccceEEEEEcccc-----hHhHhHhhccCCCeEE--EEE--cCCCceEEeccccceEEEEEeeCCEEEEE
Confidence            44578999999999999999998     89999998 9999554  444  66778999999999999999999999999


Q ss_pred             eeccCC----CCCCCCCCc--------eEEEEEeecCcccc-----------------cccCceEEEEccCCeeEEEEee
Q 014154           91 ISNAGD----SGAQPEDDG--------IVGLHLFKRQREES-----------------SSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        91 ~~~~~~----~~~~~~~~~--------i~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      |++|..    +.|.|+...        -..+.+|+......                 ...+..+++.+.|..+.||++.
T Consensus       143 fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~  222 (775)
T KOG0319|consen  143 FKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV  222 (775)
T ss_pred             ecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh
Confidence            988411    111111110        00122333221000                 0112234444444444444432


Q ss_pred             ecCc---------------------------cccCCCcceEEeeecCC--------------------------------
Q 014154          142 VTKV---------------------------SAESSCSTVKSWNVCAS--------------------------------  162 (430)
Q Consensus       142 ~~~~---------------------------~~~~~~~~i~~~~~~~~--------------------------------  162 (430)
                      ....                           .+.+.++.++.|+....                                
T Consensus       223 ~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtae  302 (775)
T KOG0319|consen  223 QYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAE  302 (775)
T ss_pred             hhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEcc
Confidence            1111                           11222333344432210                                


Q ss_pred             ---------------------------------------------------------------CceEEEEEcCCCCEEEE
Q 014154          163 ---------------------------------------------------------------GTIAFSKVDISEKFSLF  179 (430)
Q Consensus       163 ---------------------------------------------------------------~~i~~~~~~~~~~~l~~  179 (430)
                                                                                     ..|.++....+|.+|++
T Consensus       303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat  382 (775)
T KOG0319|consen  303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLAT  382 (775)
T ss_pred             ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEE
Confidence                                                                           11334443345567788


Q ss_pred             EeCCCeEEEEECCCCee----eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC--c--ce
Q 014154          180 GGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--R--PV  251 (430)
Q Consensus       180 ~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~--~~  251 (430)
                      |+.|.++++|.++.+..    +....+         |...|.++++. .-...+|++++.|.++++|++...+  .  +.
T Consensus       383 ~sKD~svilWr~~~~~~~~~~~a~~~g---------H~~svgava~~-~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~  452 (775)
T KOG0319|consen  383 GSKDKSVILWRLNNNCSKSLCVAQANG---------HTNSVGAVAGS-KLGASFFVSVSQDCTLKLWDLPKSKETAFPIV  452 (775)
T ss_pred             ecCCceEEEEEecCCcchhhhhhhhcc---------cccccceeeec-ccCccEEEEecCCceEEEecCCCcccccccce
Confidence            88888888887743222    222223         34778888883 3345699999999999999998621  1  11


Q ss_pred             E----EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154          252 M----SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (430)
Q Consensus       252 ~----~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i  327 (430)
                      .    +...|...|+|++++|+.++|++|+.|.+.+||++...+.+.++.+| ...|.++.|+|..+.|+|+|.|++|+|
T Consensus       453 ~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~~dq~laT~SgD~TvKI  531 (775)
T KOG0319|consen  453 LTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSKNDQLLATCSGDKTVKI  531 (775)
T ss_pred             ehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEeccccceeEeccCCceEEE
Confidence            1    23468899999999999999999999999999999999999999999 999999999999999999999999999


Q ss_pred             EECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          328 WDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       328 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      |.+.+..++.+  +.|| ...|..++|-.+|+. ++++.||-+++|+....
T Consensus       532 W~is~fSClkT--~eGH-~~aVlra~F~~~~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  532 WSISTFSCLKT--FEGH-TSAVLRASFIRNGKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             EEeccceeeee--ecCc-cceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence            99999999999  7899 555789999999988 99999999999998764

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.9e-35  Score=252.64  Aligned_cols=282  Identities=13%  Similarity=0.220  Sum_probs=238.8

Q ss_pred             CCCcccCCCC--CCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEE
Q 014154            2 PRTTTLECPG--CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI   79 (430)
Q Consensus         2 ~~~~~~~~~~--~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~i   79 (430)
                      |....++|..  +....|+||..||.++||+..+      .++.+|..|.++  ++++.|  +..|+||++++.||++.+
T Consensus       233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G------~l~~tl~~HkgP--I~slKW--nk~G~yilS~~vD~ttil  302 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG------NLISTLGQHKGP--IFSLKW--NKKGTYILSGGVDGTTIL  302 (524)
T ss_pred             CccCCcceEEecCCCCeEEEeecCcEEEEEecCc------hhhhhhhccCCc--eEEEEE--cCCCCEEEeccCCccEEE
Confidence            3445566664  3357899999999999999998      588899999999  677777  778999999999999999


Q ss_pred             ecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee
Q 014154           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV  159 (430)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~  159 (430)
                      ||..+|.....+..+..        +-..+.|.+.         ..+++++.++.+.|+.+.        .+++++.+. 
T Consensus       303 wd~~~g~~~q~f~~~s~--------~~lDVdW~~~---------~~F~ts~td~~i~V~kv~--------~~~P~~t~~-  356 (524)
T KOG0273|consen  303 WDAHTGTVKQQFEFHSA--------PALDVDWQSN---------DEFATSSTDGCIHVCKVG--------EDRPVKTFI-  356 (524)
T ss_pred             EeccCceEEEeeeeccC--------CccceEEecC---------ceEeecCCCceEEEEEec--------CCCcceeee-
Confidence            99999988777765422        2233455443         479999999999999986        344777776 


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee-------cCCCCEEEE
Q 014154          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-------IDDHRKFVA  232 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~~~l~s  232 (430)
                      .|.++|.++.|+|.+.+|++++.|++++||+.........+..|.         ..|..+.|.|       +..+..+++
T Consensus       357 GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs---------kei~t~~wsp~g~v~~n~~~~~~l~s  427 (524)
T KOG0273|consen  357 GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHS---------KEIYTIKWSPTGPVTSNPNMNLMLAS  427 (524)
T ss_pred             cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhc---------cceeeEeecCCCCccCCCcCCceEEE
Confidence            489999999999999999999999999999998888877777776         4466666621       123457999


Q ss_pred             EeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          233 GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      ++.|++|++||+..+. ++..|..|..+|++++|+|+|+++++|+.||.|.+|+.++++.++.+.+  .+.|..++|+.+
T Consensus       428 as~dstV~lwdv~~gv-~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~~  504 (524)
T KOG0273|consen  428 ASFDSTVKLWDVESGV-PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNAA  504 (524)
T ss_pred             eecCCeEEEEEccCCc-eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC--CCeEEEEEEcCC
Confidence            9999999999999866 6899999999999999999999999999999999999999999999998  578999999999


Q ss_pred             CCeEEEEeCCCcEEEEECC
Q 014154          313 LPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~  331 (430)
                      |.+|..+-.|+.+++.|++
T Consensus       505 G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  505 GDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             CCEEEEEecCCCceEEEec
Confidence            9999999999999999875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-34  Score=247.96  Aligned_cols=313  Identities=14%  Similarity=0.139  Sum_probs=249.9

Q ss_pred             ceeeecCCCceEEEEccCCC-CCc--ceeeeec--CCCC--CCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154           16 RALTFDSLGLIKVIEARGEH-GGV--PKVVERW--GDPH--SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~-~~~--~~~~~~~--~~~~--~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      .+++|+.|-+.++|++...- ...  ..+.+.+  .++.  ....+.++.|  +.+|.+||+|+.||.++||+. +|.++
T Consensus       193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~W--n~~G~~LatG~~~G~~riw~~-~G~l~  269 (524)
T KOG0273|consen  193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDW--NNDGTLLATGSEDGEARIWNK-DGNLI  269 (524)
T ss_pred             hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEe--cCCCCeEEEeecCcEEEEEec-Cchhh
Confidence            46788899999999987410 111  1111222  2221  1223455555  667889999999999999997 67767


Q ss_pred             ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE
Q 014154           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (430)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~  168 (430)
                      .++..        |..+|.+++|.....        ++++++.|++..+|+....         .++.-..-|..+-..+
T Consensus       270 ~tl~~--------HkgPI~slKWnk~G~--------yilS~~vD~ttilwd~~~g---------~~~q~f~~~s~~~lDV  324 (524)
T KOG0273|consen  270 STLGQ--------HKGPIFSLKWNKKGT--------YILSGGVDGTTILWDAHTG---------TVKQQFEFHSAPALDV  324 (524)
T ss_pred             hhhhc--------cCCceEEEEEcCCCC--------EEEeccCCccEEEEeccCc---------eEEEeeeeccCCccce
Confidence            66544        566999888766544        9999999999999997433         3333233344554667


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       169 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  248 (430)
                      .|- +...+++++.|+.|+|+.+....++.++.+|.         ..|.++.|  +|.+.+|++++.|++++||......
T Consensus       325 dW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~---------g~V~alk~--n~tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  325 DWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH---------GEVNALKW--NPTGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             EEe-cCceEeecCCCceEEEEEecCCCcceeeeccc---------CceEEEEE--CCCCceEEEecCCCeeEeeecCCCc
Confidence            776 45678899999999999999888888888876         77999999  8999999999999999999988755


Q ss_pred             cceEEEeecCCCeEEEEecCCC---------CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          249 RPVMSFDFRETPIKAVAEEPDS---------FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~---------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                       ....+..|+..|..+.|+|+|         ..+++++.|++|++||+..+.+++.|..| ..+|++++|+|+|+++|+|
T Consensus       393 -~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g~ylAsG  470 (524)
T KOG0273|consen  393 -SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNGRYLASG  470 (524)
T ss_pred             -chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCCcEEEec
Confidence             478899999999999999964         57899999999999999999999999998 9999999999999999999


Q ss_pred             eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154          320 GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       320 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      +.||.|.+|++++++.++.+  .+  ...|+.++|+.+|.. .....|+.+.+.+.
T Consensus       471 s~dg~V~iws~~~~~l~~s~--~~--~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  471 SLDGCVHIWSTKTGKLVKSY--QG--TGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             CCCCeeEeccccchheeEee--cC--CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence            99999999999999999984  33  345899999999988 66678888888764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.1e-33  Score=246.20  Aligned_cols=326  Identities=13%  Similarity=0.134  Sum_probs=241.9

Q ss_pred             CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc--ceeec----cCCC
Q 014154           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISN----AGDS   97 (430)
Q Consensus        24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~--~~~~~----~~~~   97 (430)
                      ..|.+-+++..     .....+.+|...+++..+    +|.|-|+|+|...|.|+|||......+  .+++.    +..+
T Consensus        39 ksv~ir~i~~~-----~~~~iYtEH~~~vtVAky----SPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di  109 (603)
T KOG0318|consen   39 KSVIIRNIDNP-----ASVDIYTEHAHQVTVAKY----SPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDI  109 (603)
T ss_pred             CEEEEEECCCc-----cceeeeccccceeEEEEe----CCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccc
Confidence            56777788876     667789999888665555    667889999999999999998653322  12222    2222


Q ss_pred             CCCCCCCceE----------EEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc-----cccCCCcceEEeee---
Q 014154           98 GAQPEDDGIV----------GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-----SAESSCSTVKSWNV---  159 (430)
Q Consensus        98 ~~~~~~~~i~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-----~~~~~~~~i~~~~~---  159 (430)
                      .+.+....|.          .+..|+...         -+--..+|.-+|.++.+.+.     +++++|+.+.+|+-   
T Consensus       110 ~Wd~ds~RI~avGEGrerfg~~F~~DSG~---------SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF  180 (603)
T KOG0318|consen  110 SWDFDSKRIAAVGEGRERFGHVFLWDSGN---------SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF  180 (603)
T ss_pred             eeCCCCcEEEEEecCccceeEEEEecCCC---------ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe
Confidence            2332222222          111121111         01111233445556666554     78888888887752   


Q ss_pred             -------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154          160 -------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (430)
Q Consensus       160 -------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  232 (430)
                             .|..-|.|+.|+|+|.++++++.||.|.+||-.+++.+..+....      .|.+.|.+++|  +||+..+++
T Consensus       181 KFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~------aHkGsIfalsW--sPDs~~~~T  252 (603)
T KOG0318|consen  181 KFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSD------AHKGSIFALSW--SPDSTQFLT  252 (603)
T ss_pred             eeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCC------CccccEEEEEE--CCCCceEEE
Confidence                   255679999999999999999999999999999999999988522      23478999999  999999999


Q ss_pred             EeCCCcEEEEECCCCC------------------------------------------cceEEEeecCCCeEEEEecCCC
Q 014154          233 GTNDHQVRLYDTSAQR------------------------------------------RPVMSFDFRETPIKAVAEEPDS  270 (430)
Q Consensus       233 ~~~dg~i~iwd~~~~~------------------------------------------~~~~~~~~~~~~i~~~~~sp~~  270 (430)
                      ++.|.+++|||..+..                                          .+...+.+|...|+++..+|++
T Consensus       253 ~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~  332 (603)
T KOG0318|consen  253 VSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG  332 (603)
T ss_pred             ecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC
Confidence            9999999999987643                                          2345567899999999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCeEE-----------eeeeCC----------------------------------------
Q 014154          271 FNIYIGNGSGDLASVDIRTGKLL-----------GCFIGK----------------------------------------  299 (430)
Q Consensus       271 ~~l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~----------------------------------------  299 (430)
                      .+|++|+.||.|.-||..++..-           ..+..+                                        
T Consensus       333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la  412 (603)
T KOG0318|consen  333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA  412 (603)
T ss_pred             CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence            99999999999999998654211           000000                                        


Q ss_pred             -------------------------------------------------------------------------CCCCeEE
Q 014154          300 -------------------------------------------------------------------------CSGSIRS  306 (430)
Q Consensus       300 -------------------------------------------------------------------------~~~~v~~  306 (430)
                                                                                               |.++|++
T Consensus       413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~  492 (603)
T KOG0318|consen  413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD  492 (603)
T ss_pred             EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence                                                                                     6788999


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      +++|||+.+|++|...+.+.+||+.+++.... ...-| .+.|.+++|+|+..+ ++|+-|..|.||+....
T Consensus       493 vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~FH-takI~~~aWsP~n~~vATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  493 VAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAFH-TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             EEECCCCcEEEEeccCCcEEEEEcccCceecc-eeeee-eeeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence            99999999999999999999999998877332 23335 566899999999999 99999999999998764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.3e-37  Score=255.10  Aligned_cols=271  Identities=14%  Similarity=0.206  Sum_probs=226.1

Q ss_pred             CCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc
Q 014154           10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (430)
Q Consensus        10 ~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~   89 (430)
                      .+...-++++|..|++|+|||...-     .++..+.+|+++|-+  +.++.    +.|++|+.|.+|+|||+++|+++.
T Consensus       203 lQYDD~kiVSGlrDnTikiWD~n~~-----~c~~~L~GHtGSVLC--Lqyd~----rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  203 LQYDDEKIVSGLRDNTIKIWDKNSL-----ECLKILTGHTGSVLC--LQYDE----RVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             EEecchhhhcccccCceEEeccccH-----HHHHhhhcCCCcEEe--eeccc----eEEEecCCCceEEEEeccCCchhh
Confidence            3444578999999999999999986     677889999999554  44433    489999999999999999999999


Q ss_pred             eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (430)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~  169 (430)
                      ++-+|        .+.+..+.+.+          +.+++++.|+++.||++....      +-+++..-..|...|..+.
T Consensus       272 tlihH--------ceaVLhlrf~n----------g~mvtcSkDrsiaVWdm~sps------~it~rrVLvGHrAaVNvVd  327 (499)
T KOG0281|consen  272 TLIHH--------CEAVLHLRFSN----------GYMVTCSKDRSIAVWDMASPT------DITLRRVLVGHRAAVNVVD  327 (499)
T ss_pred             HHhhh--------cceeEEEEEeC----------CEEEEecCCceeEEEeccCch------HHHHHHHHhhhhhheeeec
Confidence            88764        34777777655          699999999999999986443      2233333346788899998


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc
Q 014154          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (430)
Q Consensus       170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  249 (430)
                      |+  .+++++++.|.+|++|++.+++.++.+.+|+         ..|-|+.+    .++++++|+.|.+|++||+..+. 
T Consensus       328 fd--~kyIVsASgDRTikvW~~st~efvRtl~gHk---------RGIAClQY----r~rlvVSGSSDntIRlwdi~~G~-  391 (499)
T KOG0281|consen  328 FD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGA-  391 (499)
T ss_pred             cc--cceEEEecCCceEEEEeccceeeehhhhccc---------ccceehhc----cCeEEEecCCCceEEEEeccccH-
Confidence            85  5699999999999999999999999999987         55788888    78999999999999999999976 


Q ss_pred             ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe---------EEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      .++.+++|+.-|.|+.|.  .+.|++|+.||+|++||+.++.         ++..+..| .+.|..+.|  |...+++++
T Consensus       392 cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQF--D~fqIvsss  466 (499)
T KOG0281|consen  392 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQF--DEFQIISSS  466 (499)
T ss_pred             HHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEee--cceEEEecc
Confidence            489999999999999995  5699999999999999998653         34445566 889999999  777899999


Q ss_pred             CCCcEEEEECCCCcee
Q 014154          321 LDSYLRFWDIKTRQLL  336 (430)
Q Consensus       321 ~dg~i~iwd~~~~~~~  336 (430)
                      .|.+|.|||..++-.-
T Consensus       467 HddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  467 HDDTILIWDFLNGPPS  482 (499)
T ss_pred             CCCeEEEEEcCCCCcc
Confidence            9999999999876544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.4e-35  Score=243.33  Aligned_cols=271  Identities=13%  Similarity=0.176  Sum_probs=232.8

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-Ccccceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~   93 (430)
                      ..++++++|++|++||..++     ++...+.+|...  +..+++  +..|++||+++.|=.+++||..+ .+++..+.+
T Consensus       121 ~~v~~as~d~tikv~D~~tg-----~~e~~LrGHt~s--v~di~~--~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g  191 (406)
T KOG0295|consen  121 ALVVSASEDATIKVFDTETG-----ELERSLRGHTDS--VFDISF--DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG  191 (406)
T ss_pred             eEEEEecCCceEEEEEccch-----hhhhhhhccccc--eeEEEE--ecCccEEEecCCccchhheeHHHHHHHHHHhcC
Confidence            34667888999999999998     788889999999  556666  55689999999999999999875 445555544


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                              +...+.++.+++...        .+++++.|.++..|.+....        .++.+. .|...|..++.+.+
T Consensus       192 --------h~h~vS~V~f~P~gd--------~ilS~srD~tik~We~~tg~--------cv~t~~-~h~ewvr~v~v~~D  246 (406)
T KOG0295|consen  192 --------HEHGVSSVFFLPLGD--------HILSCSRDNTIKAWECDTGY--------CVKTFP-GHSEWVRMVRVNQD  246 (406)
T ss_pred             --------cccceeeEEEEecCC--------eeeecccccceeEEecccce--------eEEecc-CchHhEEEEEecCC
Confidence                    344778888888764        99999999999999987654        566665 67789999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee----------c---CCCCEEEEEeCCCcEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS----------I---DDHRKFVAGTNDHQVR  240 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~---~~~~~l~s~~~dg~i~  240 (430)
                      |.++++++.|.+|++|-+.++++...+..|+         ..|.+++|.+          .   ..++++++++.|++|+
T Consensus       247 Gti~As~s~dqtl~vW~~~t~~~k~~lR~hE---------h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk  317 (406)
T KOG0295|consen  247 GTIIASCSNDQTLRVWVVATKQCKAELREHE---------HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIK  317 (406)
T ss_pred             eeEEEecCCCceEEEEEeccchhhhhhhccc---------cceEEEEecccccCcchhhccCCCCCccEEEeecccceEE
Confidence            9999999999999999999987777777665         5577777742          0   1235899999999999


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      +||+.++. ++.++.+|...|..++|+|.|+||+++..|+++++||++++++...+..| ..-|++++|+.+..++++|+
T Consensus       318 ~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah-~hfvt~lDfh~~~p~VvTGs  395 (406)
T KOG0295|consen  318 IWDVSTGM-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH-EHFVTSLDFHKTAPYVVTGS  395 (406)
T ss_pred             EEeccCCe-EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC-cceeEEEecCCCCceEEecc
Confidence            99999987 48999999999999999999999999999999999999999999999988 89999999999999999999


Q ss_pred             CCCcEEEEEC
Q 014154          321 LDSYLRFWDI  330 (430)
Q Consensus       321 ~dg~i~iwd~  330 (430)
                      -|..+++|..
T Consensus       396 Vdqt~KvwEc  405 (406)
T KOG0295|consen  396 VDQTVKVWEC  405 (406)
T ss_pred             ccceeeeeec
Confidence            9999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-33  Score=253.85  Aligned_cols=332  Identities=14%  Similarity=0.176  Sum_probs=247.8

Q ss_pred             CCcceeeecCCCceEEEEccCCCC---CcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHG---GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~   89 (430)
                      |+.++++.+..+.+.||...+...   ....+..++.+|-..+.  .+.|  +.|.++|++|+.|.+++||.+...+-+.
T Consensus       106 Png~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~--si~W--s~DSr~l~~gsrD~s~rl~~v~~~k~~~  181 (893)
T KOG0291|consen  106 PNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT--SIDW--SDDSRLLVTGSRDLSARLFGVDGNKNLF  181 (893)
T ss_pred             CCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCcccee--EEEe--ccCCceEEeccccceEEEEEeccccccc
Confidence            567888888889999999876422   22334467778888854  4444  5566799999999999999987655432


Q ss_pred             eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcccc--------C------CCcc--
Q 014154           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE--------S------SCST--  153 (430)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~--------~------~~~~--  153 (430)
                      ..      .+.+|.+.+++..+ ..+.       ..+++.+.+|.+.+|.+...|....        +      .++.  
T Consensus       182 ~~------~l~gHkd~VvacfF-~~~~-------~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek  247 (893)
T KOG0291|consen  182 TY------ALNGHKDYVVACFF-GANS-------LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEK  247 (893)
T ss_pred             eE------eccCCCcceEEEEe-ccCc-------ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhh
Confidence            22      24456678875444 3333       4789999999999999874332000        0      0000  


Q ss_pred             --------e-EEeeecCCCceEEEEEcC------------------------------------------CCCEEEEEeC
Q 014154          154 --------V-KSWNVCASGTIAFSKVDI------------------------------------------SEKFSLFGGK  182 (430)
Q Consensus       154 --------i-~~~~~~~~~~i~~~~~~~------------------------------------------~~~~l~~~~~  182 (430)
                              . +.|--.....+++.+|++                                          .|++|+.|+.
T Consensus       248 ~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~  327 (893)
T KOG0291|consen  248 THKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS  327 (893)
T ss_pred             hcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC
Confidence                    0 111111123344444444                                          4555554443


Q ss_pred             C-CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCe
Q 014154          183 G-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI  261 (430)
Q Consensus       183 d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i  261 (430)
                      . |.+.||++.+..-+...++|         ...++++++  +|||+++++|+.||.|+|||.+.+.+ ..+|..|++.|
T Consensus       328 klgQLlVweWqsEsYVlKQQgH---------~~~i~~l~Y--SpDgq~iaTG~eDgKVKvWn~~SgfC-~vTFteHts~V  395 (893)
T KOG0291|consen  328 KLGQLLVWEWQSESYVLKQQGH---------SDRITSLAY--SPDGQLIATGAEDGKVKVWNTQSGFC-FVTFTEHTSGV  395 (893)
T ss_pred             ccceEEEEEeeccceeeecccc---------ccceeeEEE--CCCCcEEEeccCCCcEEEEeccCceE-EEEeccCCCce
Confidence            2 44555555444444444443         377999999  99999999999999999999999775 89999999999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC-cEEEEECCCCceeeEEE
Q 014154          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       262 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~  340 (430)
                      +.+.|+..++.+++.+-||+|+.||+..++..++|.........+++..|.|.++..|+.|. .|+||++++|+++..  
T Consensus       396 t~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi--  473 (893)
T KOG0291|consen  396 TAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI--  473 (893)
T ss_pred             EEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh--
Confidence            99999999999999999999999999999999999876455678899999999999998886 599999999999998  


Q ss_pred             eeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          341 LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       341 ~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      +.|| .+.|.+++|+|+|.. ++++.|.+|++|+.-..
T Consensus       474 LsGH-EgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s  510 (893)
T KOG0291|consen  474 LSGH-EGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS  510 (893)
T ss_pred             hcCC-CCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence            8899 677899999999999 99999999999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.6e-33  Score=280.74  Aligned_cols=313  Identities=13%  Similarity=0.102  Sum_probs=238.4

Q ss_pred             CCceEEEEccCCCCCcceeeee-----cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCC
Q 014154           23 LGLIKVIEARGEHGGVPKVVER-----WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS   97 (430)
Q Consensus        23 dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~   97 (430)
                      +|.+++|+....     .+...     +..|...  +.++.|  +|+|++||+|+.|+.|+||+.......... .+.+.
T Consensus       457 ~gl~~~~~~~~~-----~~~~~~~~~~~~~~~~~--V~~i~f--s~dg~~latgg~D~~I~iwd~~~~~~~~~~-~~~~~  526 (793)
T PLN00181        457 EGLCKYLSFSKL-----RVKADLKQGDLLNSSNL--VCAIGF--DRDGEFFATAGVNKKIKIFECESIIKDGRD-IHYPV  526 (793)
T ss_pred             hhhhhhhcccce-----EEEEeeccccccCCCCc--EEEEEE--CCCCCEEEEEeCCCEEEEEECCcccccccc-cccce
Confidence            678999988874     22222     3336666  445555  678999999999999999997532100000 00000


Q ss_pred             CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCE
Q 014154           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKF  176 (430)
Q Consensus        98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~  176 (430)
                      ....+...+..+.|.+...       ..+++++.+|.+++|++....        .+..+. .|...|.+++|+| ++.+
T Consensus       527 ~~~~~~~~v~~l~~~~~~~-------~~las~~~Dg~v~lWd~~~~~--------~~~~~~-~H~~~V~~l~~~p~~~~~  590 (793)
T PLN00181        527 VELASRSKLSGICWNSYIK-------SQVASSNFEGVVQVWDVARSQ--------LVTEMK-EHEKRVWSIDYSSADPTL  590 (793)
T ss_pred             EEecccCceeeEEeccCCC-------CEEEEEeCCCeEEEEECCCCe--------EEEEec-CCCCCEEEEEEcCCCCCE
Confidence            0011223566665554433       589999999999999976332        344443 6788999999997 7899


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee
Q 014154          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (430)
Q Consensus       177 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  256 (430)
                      |++|+.|++|++||+.++..+..+..+          ..+.++.|. ++++.+|++|+.|+.|++||++....++..+.+
T Consensus       591 L~Sgs~Dg~v~iWd~~~~~~~~~~~~~----------~~v~~v~~~-~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~  659 (793)
T PLN00181        591 LASGSDDGSVKLWSINQGVSIGTIKTK----------ANICCVQFP-SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG  659 (793)
T ss_pred             EEEEcCCCEEEEEECCCCcEEEEEecC----------CCeEEEEEe-CCCCCEEEEEeCCCeEEEEECCCCCccceEecC
Confidence            999999999999999988887766543          458888885 567899999999999999999986656778889


Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC------eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      |...|.++.|. ++.+|++++.|+.|++||++.+      .++..+.+| ...+..+.|+|++.+|++|+.|+.|++|+.
T Consensus       660 h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh-~~~i~~v~~s~~~~~lasgs~D~~v~iw~~  737 (793)
T PLN00181        660 HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH-TNVKNFVGLSVSDGYIATGSETNEVFVYHK  737 (793)
T ss_pred             CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC-CCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence            99999999997 6789999999999999999743      567888898 889999999999999999999999999998


Q ss_pred             CCCceeeEEEee----------ccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154          331 KTRQLLSAVFLK----------QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       331 ~~~~~~~~~~~~----------~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      .....+..+.+.          .+....|.+++|+|++.. ++++.||.|++|+.
T Consensus       738 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        738 AFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            766554332211          112456899999999988 99999999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4e-33  Score=252.33  Aligned_cols=326  Identities=13%  Similarity=0.143  Sum_probs=263.6

Q ss_pred             cccCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC-CeEEEec
Q 014154            5 TTLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-GLTDILN   81 (430)
Q Consensus         5 ~~~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d-g~i~iwd   81 (430)
                      ..|+|..|.+  ..|++|-..|...++++..-     .+++.+.-...+  +.++++  +..|++||.|+.. |.+-||+
T Consensus       266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f-----~lih~LSis~~~--I~t~~~--N~tGDWiA~g~~klgQLlVwe  336 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF-----NLIHSLSISDQK--ILTVSF--NSTGDWIAFGCSKLGQLLVWE  336 (893)
T ss_pred             cceeeeeccCCceEEEEEecCCeeEEEecCCc-----eEEEEeecccce--eeEEEe--cccCCEEEEcCCccceEEEEE
Confidence            4566777776  45778889999999999986     677777765566  455555  4468899997654 8999999


Q ss_pred             CCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC
Q 014154           82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA  161 (430)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~  161 (430)
                      +.....+...++|        ...+.++.+.+..        ..+++|..||.++||+...+-        .+..|. .|
T Consensus       337 WqsEsYVlKQQgH--------~~~i~~l~YSpDg--------q~iaTG~eDgKVKvWn~~Sgf--------C~vTFt-eH  391 (893)
T KOG0291|consen  337 WQSESYVLKQQGH--------SDRITSLAYSPDG--------QLIATGAEDGKVKVWNTQSGF--------CFVTFT-EH  391 (893)
T ss_pred             eeccceeeecccc--------ccceeeEEECCCC--------cEEEeccCCCcEEEEeccCce--------EEEEec-cC
Confidence            9888777776654        3477877776554        489999999999999976432        444555 78


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-cEE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVR  240 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~  240 (430)
                      ...|+.+.|+..++.+++.+.||+|+.||+...+..+++..+.        +.+..|++.  .|.|.++..|+.|. .|.
T Consensus       392 ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~--------p~Qfscvav--D~sGelV~AG~~d~F~If  461 (893)
T KOG0291|consen  392 TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE--------PIQFSCVAV--DPSGELVCAGAQDSFEIF  461 (893)
T ss_pred             CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC--------ceeeeEEEE--cCCCCEEEeeccceEEEE
Confidence            8999999999999999999999999999999999988887764        245678888  88899999999887 599


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      +|++++++ .+..+.+|+++|.+++|+|.+..|++++.|.+|++||+-... .+.++..  ...+..++|+|+|+.|+++
T Consensus       462 vWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVa  538 (893)
T KOG0291|consen  462 VWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVA  538 (893)
T ss_pred             EEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEE
Confidence            99999977 588999999999999999999999999999999999986542 3444543  5689999999999999999


Q ss_pred             eCCCcEEEEECCCCceeeEEEe-----------------eccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          320 GLDSYLRFWDIKTRQLLSAVFL-----------------KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       320 ~~dg~i~iwd~~~~~~~~~~~~-----------------~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      ..||.|.+||.+.+..+..+.-                 ........+.++|++||.. ++|+..+.|.+|+.+..
T Consensus       539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEG  614 (893)
T ss_pred             EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchh
Confidence            9999999999987655533210                 0111244689999999999 99999999999998764

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=2.7e-32  Score=242.17  Aligned_cols=286  Identities=17%  Similarity=0.283  Sum_probs=236.3

Q ss_pred             eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (430)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  122 (430)
                      ..+.+|...+.  ++.+  +|++++|++++.||.|.+|++.+++....+..+        ...+..+.+.+..       
T Consensus         3 ~~~~~h~~~i~--~~~~--~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~-------   63 (289)
T cd00200           3 RTLKGHTGGVT--CVAF--SPDGKLLATGSGDGTIKVWDLETGELLRTLKGH--------TGPVRDVAASADG-------   63 (289)
T ss_pred             hHhcccCCCEE--EEEE--cCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC--------CcceeEEEECCCC-------
Confidence            35667888744  5555  677889999999999999999887765555442        2355556665543       


Q ss_pred             CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                       ..+++++.++.+.+|++....        .+..+. .+...+.++.|++++.++++++.++.|.+||+.+++....+..
T Consensus        64 -~~l~~~~~~~~i~i~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  133 (289)
T cd00200          64 -TYLASGSSDKTIRLWDLETGE--------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG  133 (289)
T ss_pred             -CEEEEEcCCCeEEEEEcCccc--------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc
Confidence             388999999999999986432        344444 4566899999999988888888899999999998888777765


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i  282 (430)
                      +.         ..+.++.|  +|++.++++++.++.|++||++.++ ++..+..|...+.++.|+|+++.+++++.++.|
T Consensus       134 ~~---------~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  201 (289)
T cd00200         134 HT---------DWVNSVAF--SPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI  201 (289)
T ss_pred             CC---------CcEEEEEE--cCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence            43         67999999  7888888888889999999998755 477788888899999999999999999999999


Q ss_pred             EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-c
Q 014154          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N  361 (430)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~  361 (430)
                      ++||++.++.+..+..| ...+.++.|+|++.++++++.||.|++||+.+++.+..+  .+| ...+.+++|+|++.+ +
T Consensus       202 ~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--~~~-~~~i~~~~~~~~~~~l~  277 (289)
T cd00200         202 KLWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL--SGH-TNSVTSLAWSPDGKRLA  277 (289)
T ss_pred             EEEECCCCceecchhhc-CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc--ccc-CCcEEEEEECCCCCEEE
Confidence            99999999998888777 789999999999888888888999999999998888774  456 455799999999887 8


Q ss_pred             ccCCCCceEecC
Q 014154          362 AAADAPMLEIQN  373 (430)
Q Consensus       362 ~~~~d~~i~~~~  373 (430)
                      +++.|+.+++|+
T Consensus       278 ~~~~d~~i~iw~  289 (289)
T cd00200         278 SGSADGTIRIWD  289 (289)
T ss_pred             EecCCCeEEecC
Confidence            899999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.9e-34  Score=262.89  Aligned_cols=203  Identities=19%  Similarity=0.293  Sum_probs=185.8

Q ss_pred             CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE
Q 014154          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (430)
Q Consensus       101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~  180 (430)
                      +|.+++.+..+.+...        .++++++|.++++|++....        .+-+|. .|..+|+++.|+|.|-++|++
T Consensus       449 GH~GPVyg~sFsPd~r--------fLlScSED~svRLWsl~t~s--------~~V~y~-GH~~PVwdV~F~P~GyYFata  511 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRR--------FLLSCSEDSSVRLWSLDTWS--------CLVIYK-GHLAPVWDVQFAPRGYYFATA  511 (707)
T ss_pred             cCCCceeeeeeccccc--------ceeeccCCcceeeeecccce--------eEEEec-CCCcceeeEEecCCceEEEec
Confidence            4566888888777664        99999999999999987554        555666 889999999999999999999


Q ss_pred             eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC
Q 014154          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (430)
Q Consensus       181 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  260 (430)
                      +.|++-++|......+++.+.+|.         +.|.|+.|  +|+..++++|+.|.+|++||..++.. ++.|.+|.++
T Consensus       512 s~D~tArLWs~d~~~PlRifaghl---------sDV~cv~F--HPNs~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~  579 (707)
T KOG0263|consen  512 SHDQTARLWSTDHNKPLRIFAGHL---------SDVDCVSF--HPNSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGP  579 (707)
T ss_pred             CCCceeeeeecccCCchhhhcccc---------cccceEEE--CCcccccccCCCCceEEEEEcCCCcE-EEEecCCCCc
Confidence            999999999999888888887765         77999999  89999999999999999999999875 9999999999


Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154          261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       261 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      |.+++|||+|++|++|+.||.|.+||+.+++++..+.+| .+.|+++.|+.+|..||+||.|++|++||+..-
T Consensus       580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            999999999999999999999999999999999999999 999999999999999999999999999998643

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.8e-33  Score=225.73  Aligned_cols=288  Identities=14%  Similarity=0.200  Sum_probs=233.2

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC-CCcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  118 (430)
                      ..+..+.+|.+.|+  ...|  +|+|.+||+|+.|..|.+|++. .-+-...++        .|.+.++.+.+.....  
T Consensus        38 ap~m~l~gh~geI~--~~~F--~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s--  103 (338)
T KOG0265|consen   38 APIMLLPGHKGEIY--TIKF--HPDGSCFASGGSDRAIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGS--  103 (338)
T ss_pred             chhhhcCCCcceEE--EEEE--CCCCCeEeecCCcceEEEEeccccccceeeec--------cccceeEeeeeccCCC--
Confidence            34556778888855  4445  7889999999999999999963 222223333        3556888888877654  


Q ss_pred             ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeee
Q 014154          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKI  197 (430)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~  197 (430)
                            .+++++.|.++.+|+++...        .++-+. .|...+..+.-.. ...++.+++.|+++++||+++...+
T Consensus       104 ------~i~S~gtDk~v~~wD~~tG~--------~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~  168 (338)
T KOG0265|consen  104 ------HILSCGTDKTVRGWDAETGK--------RIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI  168 (338)
T ss_pred             ------EEEEecCCceEEEEecccce--------eeehhc-cccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence                  99999999999999987654        444444 4566777776333 3456778999999999999988877


Q ss_pred             EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                      ..+...          ..++++.|  ...+..+++|+-|+.|++||++... ....+.+|..+|+.+..+|+|.++.+-+
T Consensus       169 ~t~~~k----------yqltAv~f--~d~s~qv~sggIdn~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs~llsns  235 (338)
T KOG0265|consen  169 KTFENK----------YQLTAVGF--KDTSDQVISGGIDNDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGSFLLSNS  235 (338)
T ss_pred             hccccc----------eeEEEEEe--cccccceeeccccCceeeeccccCc-ceEEeecccCceeeEEeccCCCcccccc
Confidence            776543          56899999  7888999999999999999999855 5899999999999999999999999999


Q ss_pred             CCCcEEEEEccC----CeEEeeeeCCC---CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEE
Q 014154          278 GSGDLASVDIRT----GKLLGCFIGKC---SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVF  350 (430)
Q Consensus       278 ~d~~i~iwd~~~----~~~~~~~~~~~---~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  350 (430)
                      .|+++++||++-    .+++..+.+|.   +......+|+|++..+..|+.|..+++||..+...+..  ++|| ...|.
T Consensus       236 Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyk--lpGh-~gsvn  312 (338)
T KOG0265|consen  236 MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYK--LPGH-YGSVN  312 (338)
T ss_pred             ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEE--cCCc-ceeEE
Confidence            999999999984    35577787761   22456778999999999999999999999998888887  8899 55679


Q ss_pred             eeeccccccc-cccCCCCceEec
Q 014154          351 DSAFADKEVA-NAAADAPMLEIQ  372 (430)
Q Consensus       351 ~~~~s~~g~~-~~~~~d~~i~~~  372 (430)
                      +++|+|...+ ++++.|.+|.+=
T Consensus       313 ~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  313 EVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             EeeecCCCcEEEEeccCceeEee
Confidence            9999999999 999999998763

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.8e-35  Score=245.45  Aligned_cols=271  Identities=17%  Similarity=0.205  Sum_probs=226.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      -||+||+..|...+|+...-     .+-..+.+|+..|+.  +.|  +++|.++++|+.+|.|++|+.. ...+..++.+
T Consensus       109 RRLltgs~SGEFtLWNg~~f-----nFEtilQaHDs~Vr~--m~w--s~~g~wmiSgD~gG~iKyWqpn-mnnVk~~~ah  178 (464)
T KOG0284|consen  109 RRLLTGSQSGEFTLWNGTSF-----NFETILQAHDSPVRT--MKW--SHNGTWMISGDKGGMIKYWQPN-MNNVKIIQAH  178 (464)
T ss_pred             ceeEeecccccEEEecCcee-----eHHHHhhhhccccee--EEE--ccCCCEEEEcCCCceEEecccc-hhhhHHhhHh
Confidence            58999999999999998663     233346779999654  445  6678899999999999999974 3334444443


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                             +...|.++.+.+.+        ..+++|+.||+++||+......        -++. ..|+-.|.+++|+|..
T Consensus       179 -------h~eaIRdlafSpnD--------skF~t~SdDg~ikiWdf~~~ke--------e~vL-~GHgwdVksvdWHP~k  234 (464)
T KOG0284|consen  179 -------HAEAIRDLAFSPND--------SKFLTCSDDGTIKIWDFRMPKE--------ERVL-RGHGWDVKSVDWHPTK  234 (464)
T ss_pred             -------hhhhhheeccCCCC--------ceeEEecCCCeEEEEeccCCch--------hhee-ccCCCCcceeccCCcc
Confidence                   22467777777644        4999999999999999765442        1222 3788899999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      .+|++|+.|+.|++||.+++.++.++..|.         ..|..+.|  ++++++|++++.|..++++|+++.+ .+..+
T Consensus       235 gLiasgskDnlVKlWDprSg~cl~tlh~HK---------ntVl~~~f--~~n~N~Llt~skD~~~kv~DiR~mk-El~~~  302 (464)
T KOG0284|consen  235 GLIASGSKDNLVKLWDPRSGSCLATLHGHK---------NTVLAVKF--NPNGNWLLTGSKDQSCKVFDIRTMK-ELFTY  302 (464)
T ss_pred             ceeEEccCCceeEeecCCCcchhhhhhhcc---------ceEEEEEE--cCCCCeeEEccCCceEEEEehhHhH-HHHHh
Confidence            999999999999999999999999998876         77999999  8999999999999999999999755 48899


Q ss_pred             eecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          255 DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       255 ~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ++|...++++.|+|-. .+|.+|+.||.|..|.+...+++..+...|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus       303 r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  303 RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            9999999999999954 6888999999999999986777767765559999999999999999999999999999753

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2e-33  Score=249.30  Aligned_cols=284  Identities=17%  Similarity=0.217  Sum_probs=237.9

Q ss_pred             ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      .+..++..|.+  +.+  ||..++++++-.+|.|.|||.++..++..|...        +-++.+..+....        
T Consensus         8 k~~~rSdRVKs--Vd~--HPtePw~la~LynG~V~IWnyetqtmVksfeV~--------~~PvRa~kfiaRk--------   67 (794)
T KOG0276|consen    8 KFQSRSDRVKS--VDF--HPTEPWILAALYNGDVQIWNYETQTMVKSFEVS--------EVPVRAAKFIARK--------   67 (794)
T ss_pred             HhhccCCceee--eec--CCCCceEEEeeecCeeEEEecccceeeeeeeec--------ccchhhheeeecc--------
Confidence            34445565443  333  889999999999999999999999988888752        2255555555554        


Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEeeCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKP  202 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~  202 (430)
                      +.+++|+.|..++|++.....        .++.|. .|...|.+++.+|...++++++.|-+|++||.+.. .+...+.+
T Consensus        68 nWiv~GsDD~~IrVfnynt~e--------kV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG  138 (794)
T KOG0276|consen   68 NWIVTGSDDMQIRVFNYNTGE--------KVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG  138 (794)
T ss_pred             ceEEEecCCceEEEEecccce--------eeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC
Confidence            489999999999999987654        788887 78999999999999999999999999999999864 45667777


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC--CEEEEEeCCC
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSG  280 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~d~  280 (430)
                      |.         ..|++++|. +.|.+.+++++-|++|++|.+.... +..++++|+..|+|+.|-+.|  .+|++|+.|.
T Consensus       139 H~---------HyVMqv~fn-PkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~  207 (794)
T KOG0276|consen  139 HE---------HYVMQVAFN-PKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL  207 (794)
T ss_pred             cc---------eEEEEEEec-CCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence            65         789999995 4577899999999999999999854 689999999999999997644  7999999999


Q ss_pred             cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      +|+|||.++.+|++++.|| ...|..+.|+|.-+++++||+||++|||+..+.++..++.+  . -..+++++-.+.+..
T Consensus       208 tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~--g-leRvW~I~~~k~~~~  283 (794)
T KOG0276|consen  208 TIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNY--G-LERVWCIAAHKGDGK  283 (794)
T ss_pred             eEEEeecchHHHHHHhhcc-cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhc--C-CceEEEEeecCCCCe
Confidence            9999999999999999999 89999999999999999999999999999999888877433  2 345799998877666


Q ss_pred             -cccCCCCceEe
Q 014154          361 -NAAADAPMLEI  371 (430)
Q Consensus       361 -~~~~~d~~i~~  371 (430)
                       +.|.++|.+.+
T Consensus       284 i~vG~Deg~i~v  295 (794)
T KOG0276|consen  284 IAVGFDEGSVTV  295 (794)
T ss_pred             EEEeccCCcEEE
Confidence             66666666544

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.3e-32  Score=255.28  Aligned_cols=287  Identities=18%  Similarity=0.205  Sum_probs=239.6

Q ss_pred             CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154           49 HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (430)
Q Consensus        49 ~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  126 (430)
                      ...+.+  +.+  +|+|++|++++.++.+++|+...++  .+..+.        .+...|..+.|.+...        .+
T Consensus       159 ~~sv~~--~~f--s~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~--------~h~~~v~~~~fs~d~~--------~l  218 (456)
T KOG0266|consen  159 CPSVTC--VDF--SPDGRALAAASSDGLIRIWKLEGIKSNLLRELS--------GHTRGVSDVAFSPDGS--------YL  218 (456)
T ss_pred             cCceEE--EEE--cCCCCeEEEccCCCcEEEeecccccchhhcccc--------ccccceeeeEECCCCc--------EE
Confidence            444333  444  7889999999999999999997666  444443        3445777788776654        99


Q ss_pred             EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCC
Q 014154          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (430)
Q Consensus       127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  206 (430)
                      ++++.|++++||++....       ..++.+. .|...|++++|+|.++++++|+.|++|++||++++++...+..|.  
T Consensus       219 ~s~s~D~tiriwd~~~~~-------~~~~~l~-gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs--  288 (456)
T KOG0266|consen  219 LSGSDDKTLRIWDLKDDG-------RNLKTLK-GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS--  288 (456)
T ss_pred             EEecCCceEEEeeccCCC-------eEEEEec-CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC--
Confidence            999999999999983221       2566766 899999999999999999999999999999999999999999986  


Q ss_pred             CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCC--eEEEEecCCCCEEEEEeCCCcEE
Q 014154          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETP--IKAVAEEPDSFNIYIGNGSGDLA  283 (430)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~d~~i~  283 (430)
                             ..|++++|  ++++++|++++.|+.|++||+.++.. ++..+..+...  ++++.|+|++.+|++++.|+.++
T Consensus       289 -------~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~  359 (456)
T KOG0266|consen  289 -------DGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK  359 (456)
T ss_pred             -------CceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence                   78999999  99999999999999999999998763 24566666544  99999999999999999999999


Q ss_pred             EEEccCCeEEeeeeCCCCC--CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-
Q 014154          284 SVDIRTGKLLGCFIGKCSG--SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-  360 (430)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~--~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-  360 (430)
                      +||++.+..+..+.+|...  .+.+...++.+.++++|+.|+.|++||+.++..+..  +.+|....+..++++|...+ 
T Consensus       360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~--l~~h~~~~~~~~~~~~~~~~~  437 (456)
T KOG0266|consen  360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR--LEGHSKAAVSDLSSHPTENLI  437 (456)
T ss_pred             EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh--hcCCCCCceeccccCCCcCee
Confidence            9999999999999998443  344555678899999999999999999999888887  66774566799999999998 


Q ss_pred             cccC--CCCceEecCCCC
Q 014154          361 NAAA--DAPMLEIQNGND  376 (430)
Q Consensus       361 ~~~~--~d~~i~~~~~~~  376 (430)
                      ++++  .|+.+++|..+.
T Consensus       438 ~s~s~~~d~~~~~w~~~~  455 (456)
T KOG0266|consen  438 ASSSFEGDGLIRLWKYDF  455 (456)
T ss_pred             eecCcCCCceEEEecCCC
Confidence            6666  799999998753

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=248.14  Aligned_cols=315  Identities=16%  Similarity=0.161  Sum_probs=254.4

Q ss_pred             cCCCceEEEEccCCCCC--cceee--eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154           21 DSLGLIKVIEARGEHGG--VPKVV--ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (430)
Q Consensus        21 ~~dg~i~vw~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~   96 (430)
                      -++++|..+.++.....  .+..+  -.+.+|...|..++++-+.    ..+++| ..+.|+||+..+.++++++..   
T Consensus       341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~----~~~~Sg-a~~SikiWn~~t~kciRTi~~---  412 (888)
T KOG0306|consen  341 LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS----ILLASG-AGESIKIWNRDTLKCIRTITC---  412 (888)
T ss_pred             eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc----eeeeec-CCCcEEEEEccCcceeEEecc---
Confidence            67788888877662111  11111  3467899997777776532    244444 568999999999999999875   


Q ss_pred             CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (430)
Q Consensus        97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~  176 (430)
                             +.+.+..+.+.+.        .++.|...|.+.+++++...        .+..-. +|.+.|+.++.+|++..
T Consensus       413 -------~y~l~~~Fvpgd~--------~Iv~G~k~Gel~vfdlaS~~--------l~Eti~-AHdgaIWsi~~~pD~~g  468 (888)
T KOG0306|consen  413 -------GYILASKFVPGDR--------YIVLGTKNGELQVFDLASAS--------LVETIR-AHDGAIWSISLSPDNKG  468 (888)
T ss_pred             -------ccEEEEEecCCCc--------eEEEeccCCceEEEEeehhh--------hhhhhh-ccccceeeeeecCCCCc
Confidence                   3566666766554        89999999999999987543        222222 67899999999999999


Q ss_pred             EEEEeCCCeEEEEECCC-----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154          177 SLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       177 l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  251 (430)
                      +++|+.|.+|++||+.-     +.....+..+....  +.-...|.|+.+  +||+.+|+++--|.+|+||-+.+.+ ..
T Consensus       469 ~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt--Lel~ddvL~v~~--Spdgk~LaVsLLdnTVkVyflDtlK-Ff  543 (888)
T KOG0306|consen  469 FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT--LELEDDVLCVSV--SPDGKLLAVSLLDNTVKVYFLDTLK-FF  543 (888)
T ss_pred             eEEecCCcEEEEEeEEEEeccCcccceeeeeccceE--EeccccEEEEEE--cCCCcEEEEEeccCeEEEEEeccee-ee
Confidence            99999999999999741     11111122221111  122477999999  9999999999999999999999855 47


Q ss_pred             EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ..+.+|.-||.|+.+|||++++++|+.|..|++|-+.-|.|-..+.+| ...|.++.|.|...++.++|.|+.|+-||-.
T Consensus       544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH-dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~  622 (888)
T KOG0306|consen  544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH-DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE  622 (888)
T ss_pred             eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc-cCceeEEEEcccceeEEEecCcceEEeechh
Confidence            789999999999999999999999999999999999999999999998 8999999999999999999999999999999


Q ss_pred             CCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          332 TRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ..+++..  +.+|... |++++.+|+|.+ ++++.|.+|++|....
T Consensus       623 kFe~iq~--L~~H~~e-v~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  623 KFEEIQK--LDGHHSE-VWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             hhhhhee--eccchhe-eeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            9999988  7788544 699999999999 9999999999999876

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-32  Score=213.70  Aligned_cols=285  Identities=16%  Similarity=0.162  Sum_probs=227.7

Q ss_pred             eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      .+..+..+.++|.++.++    -+|+|.++++.|.+|++|++..|.+++++.+|        ...+........+     
T Consensus         9 r~~~l~~~qgaV~avryN----~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh--------G~EVlD~~~s~Dn-----   71 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYN----VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH--------GHEVLDAALSSDN-----   71 (307)
T ss_pred             hceeecccccceEEEEEc----cCCCEEEEcCCCceEEeecccccceeeeecCC--------Cceeeeccccccc-----
Confidence            455677788886665554    47889999999999999999999999998774        3466555544433     


Q ss_pred             ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeE
Q 014154          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIW  198 (430)
Q Consensus       121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~  198 (430)
                         ..+.+|+.|..+.+|+++...        .++.|. .|.+.|..++|+.+...+++|+.|.++++||.++.  +++.
T Consensus        72 ---skf~s~GgDk~v~vwDV~TGk--------v~Rr~r-gH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQ  139 (307)
T KOG0316|consen   72 ---SKFASCGGDKAVQVWDVNTGK--------VDRRFR-GHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQ  139 (307)
T ss_pred             ---cccccCCCCceEEEEEcccCe--------eeeecc-cccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccc
Confidence               489999999999999998665        778887 78999999999999999999999999999999753  3444


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (430)
                      .+....         +.|.++..    .+..|+.|+.||+++.||++.+.. ....  -..+|+|++|+++++..++++.
T Consensus       140 ildea~---------D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l-~sDy--~g~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  140 ILDEAK---------DGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTL-SSDY--FGHPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             hhhhhc---------CceeEEEe----cccEEEeeccCCcEEEEEeeccee-ehhh--cCCcceeEEecCCCCEEEEeec
Confidence            443332         66888888    577899999999999999998653 2222  3469999999999999999999


Q ss_pred             CCcEEEEEccCCeEEeeeeCCCCCCeE--EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          279 SGDLASVDIRTGKLLGCFIGKCSGSIR--SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~~~~~~~~~~v~--~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      |++|++.|-.+|+++..+++| ...-+  ..+++.....+++|++||.|++||+.....+..  +..+..-.+.+++++|
T Consensus       204 ~stlrLlDk~tGklL~sYkGh-kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk--~~~~~~v~v~dl~~hp  280 (307)
T KOG0316|consen  204 DSTLRLLDKETGKLLKSYKGH-KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK--LSVVSTVIVTDLSCHP  280 (307)
T ss_pred             cceeeecccchhHHHHHhccc-ccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee--eccCCceeEEeeeccc
Confidence            999999999999999999998 44333  445667778999999999999999999998887  4445344489999999


Q ss_pred             cccccccCCCCceEecC
Q 014154          357 KEVANAAADAPMLEIQN  373 (430)
Q Consensus       357 ~g~~~~~~~d~~i~~~~  373 (430)
                      .-.-+....+..+..|.
T Consensus       281 ~~~~f~~A~~~~~~~~~  297 (307)
T KOG0316|consen  281 TMDDFITATGHGDLFWY  297 (307)
T ss_pred             CccceeEecCCceecee
Confidence            87664444445555554

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-31  Score=238.13  Aligned_cols=329  Identities=12%  Similarity=0.067  Sum_probs=260.5

Q ss_pred             cccCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecC
Q 014154            5 TTLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP   82 (430)
Q Consensus         5 ~~~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~   82 (430)
                      -.+.|....|  -.++++-..|.|.|||.++.     .++..+.-..-+|+...|-.    .-+++++|+.|..|+||++
T Consensus        14 dRVKsVd~HPtePw~la~LynG~V~IWnyetq-----tmVksfeV~~~PvRa~kfia----RknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen   14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-----TMVKSFEVSEVPVRAAKFIA----RKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             CceeeeecCCCCceEEEeeecCeeEEEecccc-----eeeeeeeecccchhhheeee----ccceEEEecCCceEEEEec
Confidence            3455666655  45788889999999999996     67777776666655444433    3458999999999999999


Q ss_pred             CCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC
Q 014154           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (430)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~  162 (430)
                      .+++.+..|+.        |.+.|.++.+.+..+        .+++++.|-.+++|+-+..-.       ..+.|. .|.
T Consensus        85 nt~ekV~~FeA--------H~DyIR~iavHPt~P--------~vLtsSDDm~iKlW~we~~wa-------~~qtfe-GH~  140 (794)
T KOG0276|consen   85 NTGEKVKTFEA--------HSDYIRSIAVHPTLP--------YVLTSSDDMTIKLWDWENEWA-------CEQTFE-GHE  140 (794)
T ss_pred             ccceeeEEeec--------cccceeeeeecCCCC--------eEEecCCccEEEEeeccCcee-------eeeEEc-Ccc
Confidence            99999988776        456888888888776        999999999999998653321       445555 788


Q ss_pred             CceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       163 ~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      ..|.+++|+| +.+.+++++.|++|++|.+.+..+.+++.+|.         ..|+|+.|.+.++..+|++|+.|.+|+|
T Consensus       141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHe---------kGVN~Vdyy~~gdkpylIsgaDD~tiKv  211 (794)
T KOG0276|consen  141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHE---------KGVNCVDYYTGGDKPYLISGADDLTIKV  211 (794)
T ss_pred             eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccc---------cCcceEEeccCCCcceEEecCCCceEEE
Confidence            8999999999 67899999999999999999999999999886         6799999976667779999999999999


Q ss_pred             EECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154          242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       242 wd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                      ||.++. .+++++.+|...|..+.|+|.-..+++|++||+++||+..+.++..++.-. -.++++|+-.+.+..++.|.+
T Consensus       212 WDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g-leRvW~I~~~k~~~~i~vG~D  289 (794)
T KOG0276|consen  212 WDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG-LERVWCIAAHKGDGKIAVGFD  289 (794)
T ss_pred             eecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC-CceEEEEeecCCCCeEEEecc
Confidence            999994 469999999999999999999999999999999999999999988887765 679999999998888888877


Q ss_pred             CCcEEEEECC----------CCceeeE-------EEee--cc-------------------ccceEEeeecccccccccc
Q 014154          322 DSYLRFWDIK----------TRQLLSA-------VFLK--QH-------------------LNEVVFDSAFADKEVANAA  363 (430)
Q Consensus       322 dg~i~iwd~~----------~~~~~~~-------~~~~--~~-------------------~~~~v~~~~~s~~g~~~~~  363 (430)
                      .|.|.+ .+-          +|+.+..       ..++  +.                   ..-.--.++-+|+|+++++
T Consensus       290 eg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~V  368 (794)
T KOG0276|consen  290 EGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVV  368 (794)
T ss_pred             CCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEE
Confidence            775543 221          1221111       0000  00                   0000124678999999988


Q ss_pred             CCCCceEecCCCCCc
Q 014154          364 ADAPMLEIQNGNDTQ  378 (430)
Q Consensus       364 ~~d~~i~~~~~~~~~  378 (430)
                      +.||.-.||..-..+
T Consensus       369 cgdGEyiIyTala~R  383 (794)
T KOG0276|consen  369 CGDGEYIIYTALALR  383 (794)
T ss_pred             ecCccEEEEEeeehh
Confidence            999999998866544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=1.4e-31  Score=224.15  Aligned_cols=284  Identities=14%  Similarity=0.196  Sum_probs=222.5

Q ss_pred             CceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (430)
Q Consensus        65 g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  144 (430)
                      ++++++|+.||.++|||. .|+....+.+|        .+++..+.+.......     ..+++++.|.++.+|.+....
T Consensus       115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Gh--------t~~ik~v~~v~~n~~~-----~~fvsas~Dqtl~Lw~~~~~~  180 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGH--------TGPIKSVAWVIKNSSS-----CLFVSASMDQTLRLWKWNVGE  180 (423)
T ss_pred             CceEEEeecCCeeEEEec-CCceEEEEecC--------CcceeeeEEEecCCcc-----ceEEEecCCceEEEEEecCch
Confidence            368999999999999997 68888887764        4577767776655422     579999999999999987654


Q ss_pred             ccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEee--------------CCCCCCCC
Q 014154          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTA--------------KPPPKNSL  208 (430)
Q Consensus       145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~--------------~~~~~~~~  208 (430)
                      .    ....++.-. .|...|.++...+++..+++|+.|.+|.+|+.++..  .+...              .....-..
T Consensus       181 ~----~~~~~~~~~-GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  181 N----KVKALKVCR-GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             h----hhhHHhHhc-ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            3    111222222 788999999999999999999999999999943210  00000              00001111


Q ss_pred             CCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (430)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~  288 (430)
                      ...|...|.++.|  ++ ...+++++.|.+|+.||+.++.. ...+.+ ...+.|+.++|..++|++|+.|..|++||.+
T Consensus       256 l~GHt~~Vs~V~w--~d-~~v~yS~SwDHTIk~WDletg~~-~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR  330 (423)
T KOG0313|consen  256 LEGHTEPVSSVVW--SD-ATVIYSVSWDHTIKVWDLETGGL-KSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPR  330 (423)
T ss_pred             ecccccceeeEEE--cC-CCceEeecccceEEEEEeecccc-eeeeec-CcceeEeecccccceeeecCCCCceeecCCC
Confidence            2235688999999  44 77899999999999999999775 555554 3689999999999999999999999999999


Q ss_pred             CCe---EEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCc-eeeEEEeeccccceEEeeecccccccccc
Q 014154          289 TGK---LLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQ-LLSAVFLKQHLNEVVFDSAFADKEVANAA  363 (430)
Q Consensus       289 ~~~---~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~~~  363 (430)
                      ++.   ..+.|.+| .+.|.++.|+|.. .+|++++.|+++++||+++-. ++..  +.+| ...|.++.|+.-+.+++|
T Consensus       331 ~~~gs~v~~s~~gH-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd--I~~h-~DKvl~vdW~~~~~IvSG  406 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGH-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD--IAGH-NDKVLSVDWNEGGLIVSG  406 (423)
T ss_pred             CCCCceeEEeeecc-hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee--eccC-CceEEEEeccCCceEEec
Confidence            764   46788898 8899999999976 468999999999999999877 7877  6788 666799999977777999


Q ss_pred             CCCCceEecCCCC
Q 014154          364 ADAPMLEIQNGND  376 (430)
Q Consensus       364 ~~d~~i~~~~~~~  376 (430)
                      +.|++|+++....
T Consensus       407 GaD~~l~i~~~~~  419 (423)
T KOG0313|consen  407 GADNKLRIFKGSP  419 (423)
T ss_pred             cCcceEEEecccc
Confidence            9999999997654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.7e-31  Score=221.69  Aligned_cols=283  Identities=14%  Similarity=0.121  Sum_probs=225.2

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      +..++||+.||++++|+..+      +....+.+|.+++..++.-.. .+....+++++.|.++++|.++.+........
T Consensus       115 ~~~IltgsYDg~~riWd~~G------k~~~~~~Ght~~ik~v~~v~~-n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~  187 (423)
T KOG0313|consen  115 SKWILTGSYDGTSRIWDLKG------KSIKTIVGHTGPIKSVAWVIK-NSSSCLFVSASMDQTLRLWKWNVGENKVKALK  187 (423)
T ss_pred             CceEEEeecCCeeEEEecCC------ceEEEEecCCcceeeeEEEec-CCccceEEEecCCceEEEEEecCchhhhhHHh
Confidence            46799999999999999998      688899999999775444332 22334699999999999999987765433322


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc-----------------cccCCCcceEE
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-----------------SAESSCSTVKS  156 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-----------------~~~~~~~~i~~  156 (430)
                      .    ..+|...+.++......        .++++++-|..+.||+....+.                 -.+....++ +
T Consensus       188 ~----~~GHk~~V~sVsv~~sg--------tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~-v  254 (423)
T KOG0313|consen  188 V----CRGHKRSVDSVSVDSSG--------TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPL-V  254 (423)
T ss_pred             H----hcccccceeEEEecCCC--------CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCce-E
Confidence            1    12566677776665544        4999999999999999433322                 001111122 2


Q ss_pred             eeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154          157 WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (430)
Q Consensus       157 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  236 (430)
                      --..|..+|.++.|++ ...+++++.|.+|+.||++++....++...          ..++++.+  +|...+|++|+.|
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~----------ksl~~i~~--~~~~~Ll~~gssd  321 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN----------KSLNCISY--SPLSKLLASGSSD  321 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC----------cceeEeec--ccccceeeecCCC
Confidence            2236788999999997 778999999999999999999888777664          56889999  7889999999999


Q ss_pred             CcEEEEECCCCC--cceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEecCC
Q 014154          237 HQVRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       237 g~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      ..|++||.+++.  .+.+.+.+|...|.++.|+|.. ..|++|+.|+++++||+|+.+ +++.+.+| ...|.++.|+ +
T Consensus       322 r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h-~DKvl~vdW~-~  399 (423)
T KOG0313|consen  322 RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH-NDKVLSVDWN-E  399 (423)
T ss_pred             CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC-CceEEEEecc-C
Confidence            999999999754  3567888999999999999976 567899999999999999888 89999999 9999999996 4


Q ss_pred             CCeEEEEeCCCcEEEEECC
Q 014154          313 LPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~  331 (430)
                      +.++++||.|++|+|+...
T Consensus       400 ~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  400 GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             CceEEeccCcceEEEeccc
Confidence            5589999999999998643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-31  Score=227.12  Aligned_cols=293  Identities=18%  Similarity=0.158  Sum_probs=230.6

Q ss_pred             eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc---cceeeccCCCCCCCCCCceEEEEEeecCcc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQRE  117 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  117 (430)
                      ..+.+..|.+.|..+.|    +++|+|||+++.|.+..||.+.....   ..++.        ++..++..+.|.+.+  
T Consensus       216 t~qil~~htdEVWfl~F----S~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv--------gh~~~V~yi~wSPDd--  281 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQF----SHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV--------GHSQPVSYIMWSPDD--  281 (519)
T ss_pred             hhhhHhhCCCcEEEEEE----cCCCeeEeeccCCceEEEEEEecCcceeeeeeee--------cccCceEEEEECCCC--
Confidence            34567779999776666    56899999999999999999864433   33333        344577766665554  


Q ss_pred             cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI  197 (430)
Q Consensus       118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  197 (430)
                            .++++|+.+..+.+|++..+.        ..+.|...++..+.+.+|.|++..+++|+.|+++..||++. +..
T Consensus       282 ------ryLlaCg~~e~~~lwDv~tgd--------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~  346 (519)
T KOG0293|consen  282 ------RYLLACGFDEVLSLWDVDTGD--------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NIL  346 (519)
T ss_pred             ------CeEEecCchHheeeccCCcch--------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chh
Confidence                  499999999999999987554        44455544567899999999999999999999999999964 333


Q ss_pred             EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                      ...+....        ..|.+++.  ++||.++++.+.|..|++|+..+... +..+. -..+|+++++|.+++++++--
T Consensus       347 ~~W~gvr~--------~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~d-r~lis-e~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  347 GNWEGVRD--------PKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVD-RGLIS-EEQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             hccccccc--------ceeEEEEE--cCCCcEEEEEecccceeeechhhhhh-hcccc-ccCceeEEEEcCCCcEEEEEc
Confidence            33333221        44888999  89999999999999999999886322 22333 347999999999999999999


Q ss_pred             CCCcEEEEEccCCeEEeeeeCCCCC-CeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc
Q 014154          278 GSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA  355 (430)
Q Consensus       278 ~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s  355 (430)
                      .+..|++||++..+.+..+.||..+ -+..-+|-- +..++++||+|+.|+||+..+++++.+  +.||. ..|++++|+
T Consensus       415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~--LsGHs-~~vNcVswN  491 (519)
T KOG0293|consen  415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAV--LSGHS-KTVNCVSWN  491 (519)
T ss_pred             ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEe--ecCCc-ceeeEEecC
Confidence            9999999999998899999998322 233445543 457999999999999999999999998  88994 557999999


Q ss_pred             ccccc--cccCCCCceEecCCCCC
Q 014154          356 DKEVA--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       356 ~~g~~--~~~~~d~~i~~~~~~~~  377 (430)
                      |....  +++++||+|+||.....
T Consensus       492 P~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  492 PADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             CCCHHHhhccCCCCeEEEecCCcc
Confidence            98765  99999999999987653

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8e-33  Score=238.56  Aligned_cols=291  Identities=14%  Similarity=0.188  Sum_probs=236.3

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-CcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  118 (430)
                      +++..|.+|...|.++.+..   ..+.+|++++.|+.|+||++-. +++++++.+|        ..++..+.+.+..   
T Consensus       205 k~~~~~~gH~kgvsai~~fp---~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH--------~k~Vrd~~~s~~g---  270 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFP---KKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH--------RKPVRDASFNNCG---  270 (503)
T ss_pred             hheeeccCCccccchhhhcc---ceeeEEEecCCCceEEEEEEecCcceehhhhcc--------hhhhhhhhccccC---
Confidence            56788999999977776654   2567999999999999999976 8888888775        3466666665544   


Q ss_pred             ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeee
Q 014154          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKI  197 (430)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~  197 (430)
                           ..+++++.|..+++|+++.+.        .+..+  ..+..+.|+.|+|++ +.+++|+.|+.|+.||+++++.+
T Consensus       271 -----~~fLS~sfD~~lKlwDtETG~--------~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv  335 (503)
T KOG0282|consen  271 -----TSFLSASFDRFLKLWDTETGQ--------VLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV  335 (503)
T ss_pred             -----Ceeeeeecceeeeeeccccce--------EEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence                 489999999999999987654        23333  446788999999988 88999999999999999999988


Q ss_pred             EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                      .++..|-         ..|..+.|  -+++.++++.+.|++++||+.+.+-........+.....++..+|+++++++-+
T Consensus       336 qeYd~hL---------g~i~~i~F--~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs  404 (503)
T KOG0282|consen  336 QEYDRHL---------GAILDITF--VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS  404 (503)
T ss_pred             HHHHhhh---------hheeeeEE--ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence            8877654         77999999  689999999999999999999875432222222334567899999999999999


Q ss_pred             CCCcEEEEEccCCe---EEeeeeCCC-CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeee
Q 014154          278 GSGDLASVDIRTGK---LLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA  353 (430)
Q Consensus       278 ~d~~i~iwd~~~~~---~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  353 (430)
                      .|+.|.+|.+...-   ....|.+|. .+.-..+.|||||.+|++|+.||.+.+||.++-+++..  ++.| ...+..+.
T Consensus       405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~--lkah-~~~ci~v~  481 (503)
T KOG0282|consen  405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK--LKAH-DQPCIGVD  481 (503)
T ss_pred             cCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc--cccC-CcceEEEE
Confidence            99999999875322   234566662 23456789999999999999999999999999999988  7778 67789999


Q ss_pred             ccccccc--cccCCCCceEecC
Q 014154          354 FADKEVA--NAAADAPMLEIQN  373 (430)
Q Consensus       354 ~s~~g~~--~~~~~d~~i~~~~  373 (430)
                      |+|...-  ++++.||.|++|+
T Consensus       482 wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  482 WHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ecCCCcceeEecccCceeEecC
Confidence            9998765  8899999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-30  Score=207.01  Aligned_cols=292  Identities=13%  Similarity=0.128  Sum_probs=222.0

Q ss_pred             eeeecCCCCCCcceeeeeecCCCC-CceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      .++.+.+|.+.+..++  +  +|- |..||+++.|..|+||+...+.. ...+.+..   .+|...+.++.+.+..    
T Consensus         6 ~~~~~~gh~~r~W~~a--w--hp~~g~ilAscg~Dk~vriw~~~~~~s-~~ck~vld---~~hkrsVRsvAwsp~g----   73 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVA--W--HPGKGVILASCGTDKAVRIWSTSSGDS-WTCKTVLD---DGHKRSVRSVAWSPHG----   73 (312)
T ss_pred             eEEeecCCCCcEEEEE--e--ccCCceEEEeecCCceEEEEecCCCCc-EEEEEecc---ccchheeeeeeecCCC----
Confidence            4566788888655444  4  555 77999999999999999864332 22222111   1456677777776655    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ee
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC---EK  196 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---~~  196 (430)
                          .++++++.|.++.||.-...      .-..+.... .|..+|.|++|+++|++||+++.|..|.+|.+..+   ++
T Consensus        74 ----~~La~aSFD~t~~Iw~k~~~------efecv~~lE-GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec  142 (312)
T KOG0645|consen   74 ----RYLASASFDATVVIWKKEDG------EFECVATLE-GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFEC  142 (312)
T ss_pred             ----cEEEEeeccceEEEeecCCC------ceeEEeeee-ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEE
Confidence                48999999999999974311      112333443 68899999999999999999999999999999743   44


Q ss_pred             eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC--CCcceEEEeecCCCeEEEEecCCCCEEE
Q 014154          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIY  274 (430)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~sp~~~~l~  274 (430)
                      ...++.|.         ..|..+.|  +|...+|++++.|.+|++|+-..  ....++++.+|+..|.+++|+|.|..|+
T Consensus       143 ~aVL~~Ht---------qDVK~V~W--HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~  211 (312)
T KOG0645|consen  143 IAVLQEHT---------QDVKHVIW--HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLV  211 (312)
T ss_pred             Eeeecccc---------ccccEEEE--cCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEE
Confidence            55666655         66889999  78889999999999999998762  2346889999999999999999999999


Q ss_pred             EEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC------ceeeEEEeeccccce
Q 014154          275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR------QLLSAVFLKQHLNEV  348 (430)
Q Consensus       275 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~  348 (430)
                      +++.|++++||-+.     ..+...|...++.+.|.  ...|++++.|+.|++|.-...      +++... ...| ..-
T Consensus       212 s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aH-e~d  282 (312)
T KOG0645|consen  212 SCSDDGTVSIWRLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAH-EVD  282 (312)
T ss_pred             EecCCcceEeeeec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hccc-ccc
Confidence            99999999999865     33444447899999997  447999999999999976542      111111 2334 445


Q ss_pred             EEeeeccc--cccccccCCCCceEecCCC
Q 014154          349 VFDSAFAD--KEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       349 v~~~~~s~--~g~~~~~~~d~~i~~~~~~  375 (430)
                      |++++|+|  .+.++++++||.+++|...
T Consensus       283 VNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  283 VNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cceEEEcCCCCCceeecCCCceEEEEEec
Confidence            79999999  4555999999999999753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.1e-30  Score=212.58  Aligned_cols=269  Identities=16%  Similarity=0.179  Sum_probs=221.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..++||+.|..|.+|++....    +-...+.+|.+.  ++.+-+  .+|++.|++++.|.+|+.||+++|+.+..+++|
T Consensus        60 s~~aSgG~Dr~I~LWnv~gdc----eN~~~lkgHsgA--VM~l~~--~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h  131 (338)
T KOG0265|consen   60 SCFASGGSDRAIVLWNVYGDC----ENFWVLKGHSGA--VMELHG--MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH  131 (338)
T ss_pred             CeEeecCCcceEEEEeccccc----cceeeeccccce--eEeeee--ccCCCEEEEecCCceEEEEecccceeeehhccc
Confidence            468999999999999987632    233456689888  556655  778889999999999999999999999998875


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                      ..        -+..+.......       ..+.+++.|+++++|++....        .++.+.  ...+++++.|...+
T Consensus       132 ~~--------~vNs~~p~rrg~-------~lv~SgsdD~t~kl~D~R~k~--------~~~t~~--~kyqltAv~f~d~s  186 (338)
T KOG0265|consen  132 TS--------FVNSLDPSRRGP-------QLVCSGSDDGTLKLWDIRKKE--------AIKTFE--NKYQLTAVGFKDTS  186 (338)
T ss_pred             cc--------eeeecCccccCC-------eEEEecCCCceEEEEeecccc--------hhhccc--cceeEEEEEecccc
Confidence            32        333333222222       467788889999999987433        444442  34679999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC---CCcce
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA---QRRPV  251 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~  251 (430)
                      ..+++|+-|+.|++||++.....+.+.+|.         +.|+.+..  +++|.++.+-+.|.++++||++.   .++.+
T Consensus       187 ~qv~sggIdn~ikvWd~r~~d~~~~lsGh~---------DtIt~lsl--s~~gs~llsnsMd~tvrvwd~rp~~p~~R~v  255 (338)
T KOG0265|consen  187 DQVISGGIDNDIKVWDLRKNDGLYTLSGHA---------DTITGLSL--SRYGSFLLSNSMDNTVRVWDVRPFAPSQRCV  255 (338)
T ss_pred             cceeeccccCceeeeccccCcceEEeeccc---------CceeeEEe--ccCCCccccccccceEEEEEecccCCCCceE
Confidence            999999999999999999999999999886         88999999  89999999999999999999985   23346


Q ss_pred             EEEeecC----CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154          252 MSFDFRE----TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (430)
Q Consensus       252 ~~~~~~~----~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i  327 (430)
                      ..+.+|.    .....++|+|++..+-+|+.|..+++||......++.+.+| .+.|.+++|+|...+|.+++.|.+|++
T Consensus       256 ~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh-~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  256 KIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH-YGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             EEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc-ceeEEEeeecCCCcEEEEeccCceeEe
Confidence            6777753    24457789999999999999999999999888999999999 999999999999999999999999986


Q ss_pred             E
Q 014154          328 W  328 (430)
Q Consensus       328 w  328 (430)
                      =
T Consensus       335 g  335 (338)
T KOG0265|consen  335 G  335 (338)
T ss_pred             e
Confidence            3

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=6.4e-30  Score=226.94  Aligned_cols=268  Identities=18%  Similarity=0.252  Sum_probs=220.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++++.||.|++|++..+     +....+..|...+  ..+.+  .|++++|++++.+|.|++|++.+++.+..+.. 
T Consensus        22 ~~l~~~~~~g~i~i~~~~~~-----~~~~~~~~~~~~i--~~~~~--~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~-   91 (289)
T cd00200          22 KLLATGSGDGTIKVWDLETG-----ELLRTLKGHTGPV--RDVAA--SADGTYLASGSSDKTIRLWDLETGECVRTLTG-   91 (289)
T ss_pred             CEEEEeecCcEEEEEEeeCC-----CcEEEEecCCcce--eEEEE--CCCCCEEEEEcCCCeEEEEEcCcccceEEEec-
Confidence            67888889999999999986     4566677777764  35555  66778999999999999999988776666554 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                             +...+.++.+.+..        ..++++..++.+.+|++....        .+..+. .+...+.+++|+|++
T Consensus        92 -------~~~~i~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~--------~~~~~~-~~~~~i~~~~~~~~~  147 (289)
T cd00200          92 -------HTSYVSSVAFSPDG--------RILSSSSRDKTIKVWDVETGK--------CLTTLR-GHTDWVNSVAFSPDG  147 (289)
T ss_pred             -------cCCcEEEEEEcCCC--------CEEEEecCCCeEEEEECCCcE--------EEEEec-cCCCcEEEEEEcCcC
Confidence                   23467777766542        366777779999999986221        344444 467789999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      .++++++.++.|++||+.+++.+..+..+.         ..+.++.|  +|++..+++++.++.|++||++.+. ++..+
T Consensus       148 ~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~  215 (289)
T cd00200         148 TFVASSSQDGTIKLWDLRTGKCVATLTGHT---------GEVNSVAF--SPDGEKLLSSSSDGTIKLWDLSTGK-CLGTL  215 (289)
T ss_pred             CEEEEEcCCCcEEEEEccccccceeEecCc---------cccceEEE--CCCcCEEEEecCCCcEEEEECCCCc-eecch
Confidence            999988889999999999887777666543         57899999  8899899999999999999999754 46777


Q ss_pred             eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       255 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd  329 (430)
                      ..|...+.++.|+|++.++++++.++.|++||+.+++.+..+..| ...|.+++|+|++.+|++++.|+.|++|+
T Consensus       216 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            788889999999999888888888999999999999999899887 88999999999999999999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.5e-33  Score=229.37  Aligned_cols=272  Identities=14%  Similarity=0.192  Sum_probs=219.0

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      +.++.+|+.    .+++|..|++|+|||..+..++..+.+|        .+.+.++.+-+          ..+++|+.|.
T Consensus       200 VYClQYDD~----kiVSGlrDnTikiWD~n~~~c~~~L~GH--------tGSVLCLqyd~----------rviisGSSDs  257 (499)
T KOG0281|consen  200 VYCLQYDDE----KIVSGLRDNTIKIWDKNSLECLKILTGH--------TGSVLCLQYDE----------RVIVSGSSDS  257 (499)
T ss_pred             eEEEEecch----hhhcccccCceEEeccccHHHHHhhhcC--------CCcEEeeeccc----------eEEEecCCCc
Confidence            344555333    6999999999999999888888887764        45776666533          4889999999


Q ss_pred             eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEeeCCCCCCCCCC
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGI  210 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~  210 (430)
                      +++||++....        +++.+- .|...|..+.|+  ..++++++.|.++.+||+.....   .+.+.+|.      
T Consensus       258 TvrvWDv~tge--------~l~tli-hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHr------  320 (499)
T KOG0281|consen  258 TVRVWDVNTGE--------PLNTLI-HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHR------  320 (499)
T ss_pred             eEEEEeccCCc--------hhhHHh-hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhh------
Confidence            99999987655        454443 567888888886  67999999999999999976542   23344544      


Q ss_pred             cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC
Q 014154          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (430)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  290 (430)
                         ..|+.+.|    +.+++++++.|.+|++|++.+.+ .++++.+|...|.|+.+  .++++++|+.|++|++||+..|
T Consensus       321 ---AaVNvVdf----d~kyIVsASgDRTikvW~~st~e-fvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G  390 (499)
T KOG0281|consen  321 ---AAVNVVDF----DDKYIVSASGDRTIKVWSTSTCE-FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG  390 (499)
T ss_pred             ---hheeeecc----ccceEEEecCCceEEEEecccee-eehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc
Confidence               77999999    67799999999999999999976 48999999999999887  4889999999999999999999


Q ss_pred             eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE-------EEeeccccceEEeeecccccccccc
Q 014154          291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA-------VFLKQHLNEVVFDSAFADKEVANAA  363 (430)
Q Consensus       291 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~g~~~~~  363 (430)
                      .++..++|| +.-|.++.|  +.+.+++|+.||.|+|||+..+.....       ..+..| .+.|+.+.|. +-++++.
T Consensus       391 ~cLRvLeGH-EeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~h-sgRVFrLQFD-~fqIvss  465 (499)
T KOG0281|consen  391 ACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEH-SGRVFRLQFD-EFQIISS  465 (499)
T ss_pred             HHHHHHhch-HHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhc-cceeEEEeec-ceEEEec
Confidence            999999999 899999999  677899999999999999987543211       113345 5567999995 3344889


Q ss_pred             CCCCceEecCCCCCcc
Q 014154          364 ADAPMLEIQNGNDTQE  379 (430)
Q Consensus       364 ~~d~~i~~~~~~~~~~  379 (430)
                      +.|.+|.||+......
T Consensus       466 sHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  466 SHDDTILIWDFLNGPP  481 (499)
T ss_pred             cCCCeEEEEEcCCCCc
Confidence            9999999999976544

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-31  Score=241.55  Aligned_cols=280  Identities=15%  Similarity=0.172  Sum_probs=238.8

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      +-.++|  +|..++++++--.|.|++||++-+.++..|..        |++++.++.+.+...        .+++|+.|-
T Consensus        12 vKglsF--HP~rPwILtslHsG~IQlWDYRM~tli~rFde--------HdGpVRgv~FH~~qp--------lFVSGGDDy   73 (1202)
T KOG0292|consen   12 VKGLSF--HPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE--------HDGPVRGVDFHPTQP--------LFVSGGDDY   73 (1202)
T ss_pred             ccceec--CCCCCEEEEeecCceeeeehhhhhhHHhhhhc--------cCCccceeeecCCCC--------eEEecCCcc
Confidence            456667  89999999999999999999998988888665        567899999888776        999999999


Q ss_pred             eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  213 (430)
                      .++||+......        +... ..|-..|..+.|++.-.+|++++.|.+|+||++.+.+++..+.+|.         
T Consensus        74 kIkVWnYk~rrc--------lftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHn---------  135 (1202)
T KOG0292|consen   74 KIKVWNYKTRRC--------LFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHN---------  135 (1202)
T ss_pred             EEEEEeccccee--------hhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCc---------
Confidence            999999764431        1111 3577889999999999999999999999999999999999999876         


Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC----------------------------cceEEEeecCCCeEEEE
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----------------------------RPVMSFDFRETPIKAVA  265 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------------------~~~~~~~~~~~~i~~~~  265 (430)
                      ..|.|..|  +|...++++++-|.+|++||+..-+                            ...+.+.+|...|+-++
T Consensus       136 HYVMcAqF--hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA  213 (1202)
T KOG0292|consen  136 HYVMCAQF--HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA  213 (1202)
T ss_pred             eEEEeecc--CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence            88999999  7888999999999999999986311                            01245778999999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEEccCCeE--EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec
Q 014154          266 EEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ  343 (430)
Q Consensus       266 ~sp~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  343 (430)
                      |+|.-.+|++|+.|..|++|.+...+.  +-+..+| ...|.++-|+|...++++.|+|++|+|||+..+..++++.  .
T Consensus       214 fhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH-~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr--r  290 (1202)
T KOG0292|consen  214 FHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR--R  290 (1202)
T ss_pred             ecCCcceEEecCCcceeeEEEeccccceeehhhhcc-cCCcceEEecCccceeEecCCCccEEEEecccccceeeee--c
Confidence            999999999999999999999876554  5677898 8999999999999999999999999999999999999853  2


Q ss_pred             cccceEEeeeccccccccccCCCCceEecCCC
Q 014154          344 HLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       344 ~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      . ...-|.++-+|...+.+++.|+-+.||...
T Consensus       291 e-ndRFW~laahP~lNLfAAgHDsGm~VFkle  321 (1202)
T KOG0292|consen  291 E-NDRFWILAAHPELNLFAAGHDSGMIVFKLE  321 (1202)
T ss_pred             c-CCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence            2 344689999999999888888877777654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5.8e-31  Score=218.94  Aligned_cols=244  Identities=16%  Similarity=0.224  Sum_probs=213.2

Q ss_pred             CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE
Q 014154          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (430)
Q Consensus       101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~  180 (430)
                      .|.+.+.++.+-+.+        ..+++++.|+++.||+++..         .+++--..|-..|..+++++-..||+++
T Consensus       149 gHlgWVr~vavdP~n--------~wf~tgs~DrtikIwDlatg---------~LkltltGhi~~vr~vavS~rHpYlFs~  211 (460)
T KOG0285|consen  149 GHLGWVRSVAVDPGN--------EWFATGSADRTIKIWDLATG---------QLKLTLTGHIETVRGVAVSKRHPYLFSA  211 (460)
T ss_pred             hccceEEEEeeCCCc--------eeEEecCCCceeEEEEcccC---------eEEEeecchhheeeeeeecccCceEEEe
Confidence            455566666654443        37777778888888877643         4444444566789999999999999999


Q ss_pred             eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC
Q 014154          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (430)
Q Consensus       181 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  260 (430)
                      +.|+.|+.||++..+.++.+.+|-         +.|.|++.  .|.-..|++|+.|.++++||+++ +..+..+.+|..+
T Consensus       212 gedk~VKCwDLe~nkvIR~YhGHl---------S~V~~L~l--hPTldvl~t~grDst~RvWDiRt-r~~V~~l~GH~~~  279 (460)
T KOG0285|consen  212 GEDKQVKCWDLEYNKVIRHYHGHL---------SGVYCLDL--HPTLDVLVTGGRDSTIRVWDIRT-RASVHVLSGHTNP  279 (460)
T ss_pred             cCCCeeEEEechhhhhHHHhcccc---------ceeEEEec--cccceeEEecCCcceEEEeeecc-cceEEEecCCCCc
Confidence            999999999999999999988875         78999999  78889999999999999999999 4469999999999


Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE
Q 014154          261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       261 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  340 (430)
                      |.++.+.|-...+++|+.|++|++||++.|+-..++..| ...|.+++.+|....+++++.|. |+-|++..|..++.  
T Consensus       280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~h-kksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n--  355 (460)
T KOG0285|consen  280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHH-KKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN--  355 (460)
T ss_pred             ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecc-cceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc--
Confidence            999999998899999999999999999999999999887 89999999999999999999886 99999999999988  


Q ss_pred             eeccccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154          341 LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       341 ~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~  378 (430)
                      +.+| ..++..++...||-+++|++.|.+.+||+....
T Consensus       356 lsgh-~~iintl~~nsD~v~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  356 LSGH-NAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             cccc-cceeeeeeeccCceEEEcCCceEEEEEecCcCc
Confidence            7788 778899999999999999999999999987653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.9e-31  Score=218.15  Aligned_cols=280  Identities=15%  Similarity=0.246  Sum_probs=240.8

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      +|||+||++|+.||-|.+||..+|+....++.-....|...++.+.++.+.....        .+++++.||.+.||.+.
T Consensus       222 SPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--------MlAsGsqDGkIKvWri~  293 (508)
T KOG0275|consen  222 SPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--------MLASGSQDGKIKVWRIE  293 (508)
T ss_pred             CCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--------HhhccCcCCcEEEEEEe
Confidence            8999999999999999999999999888777655555667778888888766554        99999999999999998


Q ss_pred             ecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEE
Q 014154          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (430)
                      .+.        .++.|+-.|...|+|+.|+.++..+++++.|.++++.-+.+|+++.++.+|.         +.|+...|
T Consensus       294 tG~--------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs---------Syvn~a~f  356 (508)
T KOG0275|consen  294 TGQ--------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS---------SYVNEATF  356 (508)
T ss_pred             cch--------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc---------ccccceEE
Confidence            665        7888998999999999999999999999999999999999999999999986         88999999


Q ss_pred             eecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee--cCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeC
Q 014154          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (430)
Q Consensus       222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~  298 (430)
                        .++|..+++++.||+|++|+..+.++ +.+++.  ...+|.++-.-|.+ ..++++...++|+|.++ .|+.+..|..
T Consensus       357 --t~dG~~iisaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsS  432 (508)
T KOG0275|consen  357 --TDDGHHIISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSS  432 (508)
T ss_pred             --cCCCCeEEEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeecc
Confidence              89999999999999999999998664 666654  34578888776654 68888889999999998 7888888864


Q ss_pred             C--CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154          299 K--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       299 ~--~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                      .  ..+...+.+.+|.|.++.+.+.|+.++.|.+.+|.+..+  +.-| ..-+..++-+|.... ++-+.||.+++|.
T Consensus       433 GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t--l~Vh-EkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  433 GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT--LPVH-EKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee--eecc-cccccccccCcccchhhhhcccchhhhcC
Confidence            2  134566778999999999999999999999999999888  4455 334578999998888 9999999999995

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1e-31  Score=231.79  Aligned_cols=269  Identities=15%  Similarity=0.191  Sum_probs=220.3

Q ss_pred             ceeeecCCCceEEEEccC-CCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           16 RALTFDSLGLIKVIEARG-EHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .+++++.|+.|+||++.. +     .++.+|.+|..+|..+.+    +++|..+++++.|+.|++||+++|+++..+.. 
T Consensus       229 LlLS~gmD~~vklW~vy~~~-----~~lrtf~gH~k~Vrd~~~----s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-  298 (503)
T KOG0282|consen  229 LLLSGGMDGLVKLWNVYDDR-----RCLRTFKGHRKPVRDASF----NNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-  298 (503)
T ss_pred             EEEecCCCceEEEEEEecCc-----ceehhhhcchhhhhhhhc----cccCCeeeeeecceeeeeeccccceEEEEEec-
Confidence            478999999999999987 4     789999999999665555    55777899999999999999999999988865 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                              ...+.++.+.+...       ..+++|..++.+..|++....        .++-|+ .|-+.|..+.|-+++
T Consensus       299 --------~~~~~cvkf~pd~~-------n~fl~G~sd~ki~~wDiRs~k--------vvqeYd-~hLg~i~~i~F~~~g  354 (503)
T KOG0282|consen  299 --------DKVPTCVKFHPDNQ-------NIFLVGGSDKKIRQWDIRSGK--------VVQEYD-RHLGAILDITFVDEG  354 (503)
T ss_pred             --------CCCceeeecCCCCC-------cEEEEecCCCcEEEEeccchH--------HHHHHH-hhhhheeeeEEccCC
Confidence                    12444556655543       589999999999999987554        444444 466889999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc--ceE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVM  252 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~  252 (430)
                      .++++.+.|+++++|+...+-.+.....+.        .....++..  +|++..++.-+.|..|.+|.+....+  ...
T Consensus       355 ~rFissSDdks~riWe~~~~v~ik~i~~~~--------~hsmP~~~~--~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK  424 (503)
T KOG0282|consen  355 RRFISSSDDKSVRIWENRIPVPIKNIADPE--------MHTMPCLTL--HPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK  424 (503)
T ss_pred             ceEeeeccCccEEEEEcCCCccchhhcchh--------hccCcceec--CCCCCeehhhccCceEEEEecccccccCHhh
Confidence            999999999999999998766554333221        134567777  89999999999999999998764221  234


Q ss_pred             EEeecC--CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEE
Q 014154          253 SFDFRE--TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWD  329 (430)
Q Consensus       253 ~~~~~~--~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd  329 (430)
                      .+.+|.  +--..+.|||||.+|++|+.||.+.+||.++-+++..++.| ..++..+.|+|.. ..+|+|+.||.|++||
T Consensus       425 ~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah-~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  425 RFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH-DQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             hhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC-CcceEEEEecCCCcceeEecccCceeEecC
Confidence            677774  34567889999999999999999999999999999999998 9999999999965 5799999999999996

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=4.1e-30  Score=232.83  Aligned_cols=281  Identities=15%  Similarity=0.158  Sum_probs=238.2

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..++..+..+.|++|+.++.     +++.++...    ++++.+|  -|.++++++|...|.+.++|+.....+.+++. 
T Consensus       385 ~~~~~Sga~~SikiWn~~t~-----kciRTi~~~----y~l~~~F--vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A-  452 (888)
T KOG0306|consen  385 SILLASGAGESIKIWNRDTL-----KCIRTITCG----YILASKF--VPGDRYIVLGTKNGELQVFDLASASLVETIRA-  452 (888)
T ss_pred             ceeeeecCCCcEEEEEccCc-----ceeEEeccc----cEEEEEe--cCCCceEEEeccCCceEEEEeehhhhhhhhhc-
Confidence            34555566789999999987     788777632    6788888  88889999999999999999998888877765 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee---ecCCCceEEEEEc
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---VCASGTIAFSKVD  171 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~---~~~~~~i~~~~~~  171 (430)
                             |++.|-.+...+.+.        .+++++.|.++.+|+........+.....+.+-.   +.-...|.|+.++
T Consensus       453 -------HdgaIWsi~~~pD~~--------g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S  517 (888)
T KOG0306|consen  453 -------HDGAIWSISLSPDNK--------GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS  517 (888)
T ss_pred             -------cccceeeeeecCCCC--------ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence                   456777777776655        8999999999999998765542233222222111   1124679999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  251 (430)
                      |++++|+++-.|++|++|-+++.+...++.+|.         -+|.|+..  +||+.+++||+.|..|++|-+.-+.+ .
T Consensus       518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk---------LPV~smDI--S~DSklivTgSADKnVKiWGLdFGDC-H  585 (888)
T KOG0306|consen  518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK---------LPVLSMDI--SPDSKLIVTGSADKNVKIWGLDFGDC-H  585 (888)
T ss_pred             CCCcEEEEEeccCeEEEEEecceeeeeeecccc---------cceeEEec--cCCcCeEEeccCCCceEEeccccchh-h
Confidence            999999999999999999999999988888886         67999999  89999999999999999999998775 7


Q ss_pred             EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ..+-+|...|+++.|-|...++++++.|+.|+-||-...+.++.+.+| ...|++++.+|+|.+++++|.|.+|++|...
T Consensus       586 KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  586 KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH-HSEVWCLAVSPNGSFVVSSSHDKSIRLWERT  664 (888)
T ss_pred             hhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-hheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence            888999999999999999999999999999999999999999999999 7899999999999999999999999999865


Q ss_pred             CCce
Q 014154          332 TRQL  335 (430)
Q Consensus       332 ~~~~  335 (430)
                      ....
T Consensus       665 de~~  668 (888)
T KOG0306|consen  665 DEIL  668 (888)
T ss_pred             Ccce
Confidence            5333

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.98  E-value=5.8e-30  Score=204.35  Aligned_cols=279  Identities=12%  Similarity=0.098  Sum_probs=226.9

Q ss_pred             eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (430)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  122 (430)
                      ..+.+|...+..+++    ..+|..|++|+.|+++.+|++...+......      ..++.+.+.++.+++.+.      
T Consensus        14 r~~~~~~~~v~Sv~w----n~~g~~lasgs~dktv~v~n~e~~r~~~~~~------~~gh~~svdql~w~~~~~------   77 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAW----NCDGTKLASGSFDKTVSVWNLERDRFRKELV------YRGHTDSVDQLCWDPKHP------   77 (313)
T ss_pred             HHhhhhhhcceEEEE----cccCceeeecccCCceEEEEecchhhhhhhc------ccCCCcchhhheeCCCCC------
Confidence            345667777655555    4467799999999999999998775554433      234556777788888776      


Q ss_pred             CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                       ..+++++.+.++++|++.....        +.  .+...+.=.-+.|+|++++++++..|..|...|.++.+.+.+.+.
T Consensus        78 -d~~atas~dk~ir~wd~r~~k~--------~~--~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~  146 (313)
T KOG1407|consen   78 -DLFATASGDKTIRIWDIRSGKC--------TA--RIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF  146 (313)
T ss_pred             -cceEEecCCceEEEEEeccCcE--------EE--EeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence             7999999999999999876542        22  223344555689999999999999999999999988777655443


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i  282 (430)
                      .          ..+..+.|  +.++.+++.....|.|.|...... +|+..++.|.....||.|+|+|++|++|+.|..+
T Consensus       147 ~----------~e~ne~~w--~~~nd~Fflt~GlG~v~ILsypsL-kpv~si~AH~snCicI~f~p~GryfA~GsADAlv  213 (313)
T KOG1407|consen  147 K----------FEVNEISW--NNSNDLFFLTNGLGCVEILSYPSL-KPVQSIKAHPSNCICIEFDPDGRYFATGSADALV  213 (313)
T ss_pred             c----------ceeeeeee--cCCCCEEEEecCCceEEEEecccc-ccccccccCCcceEEEEECCCCceEeecccccee
Confidence            2          45777888  455667776677899999998874 4799999999999999999999999999999999


Q ss_pred             EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-c
Q 014154          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N  361 (430)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~  361 (430)
                      -+||+...-+++.+.-+ .-+|+.+.||.+|++||+||+|..|-|=++++|..+..+...    +..+.++|+|...+ +
T Consensus       214 SLWD~~ELiC~R~isRl-dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~----~~t~tVAWHPk~~LLA  288 (313)
T KOG1407|consen  214 SLWDVDELICERCISRL-DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE----GPTFTVAWHPKRPLLA  288 (313)
T ss_pred             eccChhHhhhheeeccc-cCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc----CCceeEEecCCCceee
Confidence            99999998888889887 899999999999999999999999999999999999987543    33689999999988 6


Q ss_pred             ccCCC
Q 014154          362 AAADA  366 (430)
Q Consensus       362 ~~~~d  366 (430)
                      .+.+|
T Consensus       289 yA~dd  293 (313)
T KOG1407|consen  289 YACDD  293 (313)
T ss_pred             EEecC
Confidence            66554

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.98  E-value=3.2e-31  Score=210.20  Aligned_cols=291  Identities=15%  Similarity=0.162  Sum_probs=231.0

Q ss_pred             ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      +-.+|+.+|.-++++. -.|+|-+|++++.||.-.+-+-++|.-+.+|.+|        .+.+-+..+-...        
T Consensus         9 ~c~ghtrpvvdl~~s~-itp~g~flisa~kd~~pmlr~g~tgdwigtfegh--------kgavw~~~l~~na--------   71 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSP-ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGH--------KGAVWSATLNKNA--------   71 (334)
T ss_pred             EEcCCCcceeEEeccC-CCCCceEEEEeccCCCchhccCCCCCcEEeeecc--------CcceeeeecCchh--------
Confidence            4567889977777764 4689999999999999988888899988888775        2344332222211        


Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKP  202 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~  202 (430)
                      -+-++++.|-+..||+.....        .  +..+.|..-|..++|+.+.++|++|+.+..+++||++..+ +..++.+
T Consensus        72 ~~aasaaadftakvw~a~tgd--------e--lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   72 TRAASAAADFTAKVWDAVTGD--------E--LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             hhhhhhcccchhhhhhhhhhh--------h--hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC
Confidence            244556666677777744322        2  2234566789999999999999999999999999997643 2344444


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i  282 (430)
                      |.         ..|..+.|  ....+.|++.+.|++|++||.+++.. ++.+.. ..+|+++.++++|++|.++ ..+.|
T Consensus       142 ht---------g~Ir~v~w--c~eD~~iLSSadd~tVRLWD~rTgt~-v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV  207 (334)
T KOG0278|consen  142 HT---------GGIRTVLW--CHEDKCILSSADDKTVRLWDHRTGTE-VQSLEF-NSPVTSLEVSQDGRILTIA-YGSSV  207 (334)
T ss_pred             CC---------CcceeEEE--eccCceEEeeccCCceEEEEeccCcE-EEEEec-CCCCcceeeccCCCEEEEe-cCcee
Confidence            43         77999999  45677888889999999999999775 777765 3689999999999877665 56779


Q ss_pred             EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-c
Q 014154          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N  361 (430)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~  361 (430)
                      .+||..+..++..+..  ...|.+..++|+..++++|+.|..++.||..++..+..+ .++|.+ .|.++.|+|+|.. +
T Consensus       208 ~Fwdaksf~~lKs~k~--P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~g-pVhcVrFSPdGE~yA  283 (334)
T KOG0278|consen  208 KFWDAKSFGLLKSYKM--PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFG-PVHCVRFSPDGELYA  283 (334)
T ss_pred             EEeccccccceeeccC--ccccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCC-ceEEEEECCCCceee
Confidence            9999999999988887  568999999999999999999999999999999999874 578854 5699999999998 9


Q ss_pred             ccCCCCceEecCCCCCcc
Q 014154          362 AAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       362 ~~~~d~~i~~~~~~~~~~  379 (430)
                      +|+.||+|++|.....+.
T Consensus       284 sGSEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  284 SGSEDGTIRLWQTTPGKT  301 (334)
T ss_pred             ccCCCceEEEEEecCCCc
Confidence            999999999999887654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.8e-30  Score=205.39  Aligned_cols=266  Identities=15%  Similarity=0.216  Sum_probs=217.8

Q ss_pred             cCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCc
Q 014154           73 KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS  152 (430)
Q Consensus        73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  152 (430)
                      ..|++.|.++..++-+..+..+.      -.+.+..+.|.....       ..+++++.||++++|++....       +
T Consensus        36 G~G~L~ile~~~~~gi~e~~s~d------~~D~LfdV~Wse~~e-------~~~~~a~GDGSLrl~d~~~~s-------~   95 (311)
T KOG0277|consen   36 GNGRLFILEVTDPKGIQECQSYD------TEDGLFDVAWSENHE-------NQVIAASGDGSLRLFDLTMPS-------K   95 (311)
T ss_pred             cCceEEEEecCCCCCeEEEEeee------cccceeEeeecCCCc-------ceEEEEecCceEEEeccCCCC-------c
Confidence            45899999987565555554321      125666777776665       799999999999999965543       3


Q ss_pred             ceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          153 TVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       153 ~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      +|..|. +|..+|.++.|++ ....+++++.|++|++|+...++.+.++.+|.         .-|...+|+ +..+++++
T Consensus        96 Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~---------~~Iy~a~~s-p~~~nlfa  164 (311)
T KOG0277|consen   96 PIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN---------SCIYQAAFS-PHIPNLFA  164 (311)
T ss_pred             chhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc---------cEEEEEecC-CCCCCeEE
Confidence            888887 7899999999998 56677888999999999999999999988875         779999995 34678999


Q ss_pred             EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEe
Q 014154          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~  309 (430)
                      +++.|+.+++||++...+ ...+..|...|.|+.|+. +.+.|++|+.|+.|+.||+++-+ ++.++.+| .-.|+.+.|
T Consensus       165 s~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh-~~AVRkvk~  242 (311)
T KOG0277|consen  165 SASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGH-GLAVRKVKF  242 (311)
T ss_pred             EccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCC-ceEEEEEec
Confidence            999999999999998765 444899999999999986 55788999999999999999765 58889898 899999999


Q ss_pred             cCCC-CeEEEEeCCCcEEEEECCCCce-eeEEEeeccccceEEeeecccccc--ccccCCCCceEecCC
Q 014154          310 HPTL-PIIASCGLDSYLRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFADKEV--ANAAADAPMLEIQNG  374 (430)
Q Consensus       310 ~~~~-~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~--~~~~~~d~~i~~~~~  374 (430)
                      ||.. .+|++++.|-++||||...+.. +.+  ...| ...+..+.||+-..  +++.+.|+.+.||+.
T Consensus       243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~--~~~H-tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  243 SPHHASLLASASYDMTVRIWDPERQDSAIET--VDHH-TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             CcchhhHhhhccccceEEecccccchhhhhh--hhcc-ceEEeccccccccCceeeecccccceeeecc
Confidence            9965 6899999999999999985543 333  3344 77789999998533  389999999999984

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.7e-28  Score=201.62  Aligned_cols=289  Identities=15%  Similarity=0.177  Sum_probs=222.1

Q ss_pred             eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccc
Q 014154           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS  121 (430)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  121 (430)
                      .+.|..-.+.  +.++.|  +++|.+|++++.|.+|+|||..+++++.++...        .-.+..+++....      
T Consensus         7 ak~f~~~~~~--i~sl~f--s~~G~~litss~dDsl~LYd~~~g~~~~ti~sk--------kyG~~~~~Fth~~------   68 (311)
T KOG1446|consen    7 AKVFRETNGK--INSLDF--SDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK--------KYGVDLACFTHHS------   68 (311)
T ss_pred             ccccccCCCc--eeEEEe--cCCCCEEEEecCCCeEEEEEcCCCceeeEeecc--------cccccEEEEecCC------
Confidence            3445544444  556666  778999999999999999999999998887652        1133334444433      


Q ss_pred             cCceEEEEcc--CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          122 RSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       122 ~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                        ..++.++.  |.+++..++...        ..++.|. .|...|..++.+|-++.+++++.|++|++||++..++...
T Consensus        69 --~~~i~sStk~d~tIryLsl~dN--------kylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~  137 (311)
T KOG1446|consen   69 --NTVIHSSTKEDDTIRYLSLHDN--------KYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL  137 (311)
T ss_pred             --ceEEEccCCCCCceEEEEeecC--------ceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE
Confidence              36666666  556777766533        3677776 8999999999999999999999999999999997666555


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC-CcceEEEeec---CCCeEEEEecCCCCEEEE
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFR---ETPIKAVAEEPDSFNIYI  275 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~---~~~i~~~~~sp~~~~l~~  275 (430)
                      +...           .-..++|  .|.|-++|++.....|++||++.. +.|..++...   ....+.+.|||||++|+.
T Consensus       138 l~~~-----------~~pi~Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl  204 (311)
T KOG1446|consen  138 LNLS-----------GRPIAAF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL  204 (311)
T ss_pred             EecC-----------CCcceeE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence            4442           2345688  899999999988889999999975 4466666544   567899999999999999


Q ss_pred             EeCCCcEEEEEccCCeEEeeeeCCCCCC--eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeee
Q 014154          276 GNGSGDLASVDIRTGKLLGCFIGKCSGS--IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA  353 (430)
Q Consensus       276 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  353 (430)
                      ++..+.+++.|.-+|..+..+.++....  -....|.||++++++|+.||+|.+|+++++..+..  +.+.....+.++.
T Consensus       205 sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~--~~~~~~~~~~~~~  282 (311)
T KOG1446|consen  205 STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV--LRGPNGGPVSCVR  282 (311)
T ss_pred             EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE--ecCCCCCCccccc
Confidence            9999999999999999999888762221  24678999999999999999999999999999998  5554355578999


Q ss_pred             ccccccccccCCCCceEecCCC
Q 014154          354 FADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       354 ~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      |+|.-.+ .++.+..+.+|-..
T Consensus       283 fnP~~~m-f~sa~s~l~fw~p~  303 (311)
T KOG1446|consen  283 FNPRYAM-FVSASSNLVFWLPD  303 (311)
T ss_pred             cCCceee-eeecCceEEEEecc
Confidence            9997665 33344567777544

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=5.1e-30  Score=231.01  Aligned_cols=354  Identities=14%  Similarity=0.134  Sum_probs=253.7

Q ss_pred             CCcccCCCCCCCcceeeecCCCceEEEEccCCCC-Ccceeeeec--------------CCCC--CCcceeeeeecCCCCC
Q 014154            3 RTTTLECPGCPPLRALTFDSLGLIKVIEARGEHG-GVPKVVERW--------------GDPH--SSNCVLAASIDDSQND   65 (430)
Q Consensus         3 ~~~~~~~~~~~~~~l~t~~~dg~i~vw~~~~~~~-~~~~~~~~~--------------~~~~--~~~~~~~~~~~~~p~g   65 (430)
                      ||+..+|.....-.+++|+.+|.|++++..+..- +..+.-+.+              .+..  .-.-++++.|  .|..
T Consensus       259 RTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~F--det~  336 (1080)
T KOG1408|consen  259 RTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQF--DETT  336 (1080)
T ss_pred             hccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEe--cCCC
Confidence            4666667766777788999999999999876420 000010111              1111  1122567777  6667


Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeec--Cccccc-ccCceEEEEccCCeeEEEEeee
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKR--QREESS-SRSRTLLTCTTKGKASMRSIEV  142 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~-~~~~~~~~~~~~g~~~v~~~~~  142 (430)
                      +.|.+...|..|.|||+.+-..+.....     +.-|...|..+..++-  ...... -..+.+++|+.|+++++|++++
T Consensus       337 ~klscVYndhSlYvWDvrD~~kvgk~~s-----~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~  411 (1080)
T KOG1408|consen  337 DKLSCVYNDHSLYVWDVRDVNKVGKCSS-----MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAF  411 (1080)
T ss_pred             ceEEEEEcCceEEEEeccccccccceee-----eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccc
Confidence            7899999999999999986544433222     0011112222222221  000000 0236799999999999999988


Q ss_pred             cCc--------cc------cCCCcceE--------Eeee------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 014154          143 TKV--------SA------ESSCSTVK--------SWNV------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC  194 (430)
Q Consensus       143 ~~~--------~~------~~~~~~i~--------~~~~------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  194 (430)
                      ...        .+      ...|+...        +++.      .....+.+++++|++++|++|..-|++++|++...
T Consensus       412 ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l  491 (1080)
T KOG1408|consen  412 CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL  491 (1080)
T ss_pred             ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh
Confidence            332        00      00111111        1110      01245899999999999999999999999999988


Q ss_pred             eeeEeeCCCCCCCCCCcCCcceeEEEEeecC--CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEe------
Q 014154          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE------  266 (430)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~------  266 (430)
                      +.+..+..|.         ..|.|+.|. .|  ...+|++++.|..|+|||......+++++.+|...|+++.|      
T Consensus       492 ~~~~~~eAHe---------sEilcLeyS-~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  492 EYTCFMEAHE---------SEILCLEYS-FPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             hhhhheeccc---------ceeEEEeec-CchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence            7777777776         779999995 23  23589999999999999998766566677777666666555      


Q ss_pred             -------------------------------------------cCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC--C
Q 014154          267 -------------------------------------------EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--S  301 (430)
Q Consensus       267 -------------------------------------------sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~  301 (430)
                                                                 .|..+++++++.|..|+|||+.+++....|++.+  .
T Consensus       562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e  641 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE  641 (1080)
T ss_pred             eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC
Confidence                                                       3345678899999999999999999999998642  5


Q ss_pred             CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +....+...|.|-||++...|.++.++|..+|+++..  .-|| +..|+.+.|.+|-+. ++++.||.|.||..+.
T Consensus       642 G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~--m~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  642 GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ--MTGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             CceEEEEECCCccEEEEeecCCceEEEEeccchhhhh--hcCc-chheeeeeecccchhheeecCCceEEEEECch
Confidence            6778899999999999999999999999999999998  6688 777899999999998 9999999999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.8e-30  Score=218.66  Aligned_cols=274  Identities=13%  Similarity=0.102  Sum_probs=220.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|++++.|.+..+|.+...  .-.++..++.+|..+|.  .+.|  +||.+||++++.+..+.+||+.+|.....+..-
T Consensus       237 kyLAsaSkD~Taiiw~v~~d--~~~kl~~tlvgh~~~V~--yi~w--SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~  310 (519)
T KOG0293|consen  237 KYLASASKDSTAIIWIVVYD--VHFKLKKTLVGHSQPVS--YIMW--SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG  310 (519)
T ss_pred             eeEeeccCCceEEEEEEecC--cceeeeeeeecccCceE--EEEE--CCCCCeEEecCchHheeeccCCcchhhhhcccC
Confidence            67999999999999998764  22567889999999954  5555  777789999999999999999999987776531


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                             ....+.+..|.+..        ..+++|+.|+.+..|++...         .+.-|.-.....|.++++.++|
T Consensus       311 -------~~~S~~sc~W~pDg--------~~~V~Gs~dr~i~~wdlDgn---------~~~~W~gvr~~~v~dlait~Dg  366 (519)
T KOG0293|consen  311 -------LGFSVSSCAWCPDG--------FRFVTGSPDRTIIMWDLDGN---------ILGNWEGVRDPKVHDLAITYDG  366 (519)
T ss_pred             -------cCCCcceeEEccCC--------ceeEecCCCCcEEEecCCcc---------hhhcccccccceeEEEEEcCCC
Confidence                   12344555555544        48999999999999997533         4556765555779999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      +++++.+.|..|++|+.++......+..+          ..|++...  +.++.++++--.+..+++||+.. ...++.+
T Consensus       367 k~vl~v~~d~~i~l~~~e~~~dr~lise~----------~~its~~i--S~d~k~~LvnL~~qei~LWDl~e-~~lv~kY  433 (519)
T KOG0293|consen  367 KYVLLVTVDKKIRLYNREARVDRGLISEE----------QPITSFSI--SKDGKLALVNLQDQEIHLWDLEE-NKLVRKY  433 (519)
T ss_pred             cEEEEEecccceeeechhhhhhhcccccc----------CceeEEEE--cCCCcEEEEEcccCeeEEeecch-hhHHHHh
Confidence            99999999999999999875544333332          56888888  89999999999999999999996 4457788


Q ss_pred             eecCCC--eEEEEec-CCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEEC
Q 014154          255 DFRETP--IKAVAEE-PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDI  330 (430)
Q Consensus       255 ~~~~~~--i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~  330 (430)
                      .+|...  +..-+|- .+..++++|++|+.|+||+..+++++.++.|| ...|++++|+|.. .++|+||+||+||||-.
T Consensus       434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH-SKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC-cceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            888643  2223343 35589999999999999999999999999999 8999999999966 57899999999999987


Q ss_pred             CC
Q 014154          331 KT  332 (430)
Q Consensus       331 ~~  332 (430)
                      ..
T Consensus       513 ~~  514 (519)
T KOG0293|consen  513 SD  514 (519)
T ss_pred             Cc
Confidence            53

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.97  E-value=3.5e-29  Score=229.38  Aligned_cols=337  Identities=15%  Similarity=0.167  Sum_probs=251.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec-
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-   93 (430)
                      .+++.|+.+|.+.+|+++++     +++.+|.++...|  .++..  +|--+.+|.|..+|+|.|+++..++.+.+|+. 
T Consensus       173 NKIvvGs~~G~lql~Nvrt~-----K~v~~f~~~~s~I--T~ieq--sPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d  243 (910)
T KOG1539|consen  173 NKIVVGSSQGRLQLWNVRTG-----KVVYTFQEFFSRI--TAIEQ--SPALDVVAIGLENGTVIIFNLKFDKILMSFKQD  243 (910)
T ss_pred             eeEEEeecCCcEEEEEeccC-----cEEEEecccccce--eEecc--CCcceEEEEeccCceEEEEEcccCcEEEEEEcc
Confidence            68999999999999999999     9999999988764  44444  66667899999999999999999999999876 


Q ss_pred             ---cCCCCCCCCCCceE-------EEEEeecCcccc---------c--------ccCceEEEEccCCeeEEEEeeecCc-
Q 014154           94 ---AGDSGAQPEDDGIV-------GLHLFKRQREES---------S--------SRSRTLLTCTTKGKASMRSIEVTKV-  145 (430)
Q Consensus        94 ---~~~~~~~~~~~~i~-------~~~~~~~~~~~~---------~--------~~~~~~~~~~~~g~~~v~~~~~~~~-  145 (430)
                         +..+.|.-...++.       .+.+|+.+....         +        .....+++++.|..+++|-.+.... 
T Consensus       244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~  323 (910)
T KOG1539|consen  244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV  323 (910)
T ss_pred             ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc
Confidence               22333332222221       244554433110         0        0112455556666666665441000 


Q ss_pred             ---------------------------cccCCCcceE-------------------------------------------
Q 014154          146 ---------------------------SAESSCSTVK-------------------------------------------  155 (430)
Q Consensus       146 ---------------------------~~~~~~~~i~-------------------------------------------  155 (430)
                                                 .+.+.|++.+                                           
T Consensus       324 pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~  403 (910)
T KOG1539|consen  324 PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAF  403 (910)
T ss_pred             chheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeec
Confidence                                       1111222111                                           


Q ss_pred             ----------------------EeeecCC----------------CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154          156 ----------------------SWNVCAS----------------GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI  197 (430)
Q Consensus       156 ----------------------~~~~~~~----------------~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  197 (430)
                                            .|+....                ..+.+++.++.|++.+.|...|.|-+|++.+|...
T Consensus       404 ~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r  483 (910)
T KOG1539|consen  404 ENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR  483 (910)
T ss_pred             ccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee
Confidence                                  1211110                24778889999999999999999999999998877


Q ss_pred             EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                      ..+...      ..|...|+.++.  ..-++.+++++.+|.+.+||+.... +...+.. ...+.++.++.....++++.
T Consensus       484 ~sf~~~------~ah~~~V~gla~--D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l-~~~~~~iv~hr~s~l~a~~~  553 (910)
T KOG1539|consen  484 KSFGDS------PAHKGEVTGLAV--DGTNRLLVSAGADGILKFWDFKKKV-LKKSLRL-GSSITGIVYHRVSDLLAIAL  553 (910)
T ss_pred             cccccC------ccccCceeEEEe--cCCCceEEEccCcceEEEEecCCcc-eeeeecc-CCCcceeeeeehhhhhhhhc
Confidence            776311      113377999999  6667889999999999999999733 4555553 35788899998888999999


Q ss_pred             CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154          278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       278 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      .|-.|+++|..+.+.++.|.+| ...|++++|||||++|++++.|++||+||+.++.++..+.    .+..+.++.|+|+
T Consensus       554 ddf~I~vvD~~t~kvvR~f~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd~~~~sls~SPn  628 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRKVVREFWGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VDSPCTSLSFSPN  628 (910)
T ss_pred             CceeEEEEEchhhhhhHHhhcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cCCcceeeEECCC
Confidence            9999999999999999999999 9999999999999999999999999999999999999863    3555789999999


Q ss_pred             ccc-cccCCC-CceEecCCC
Q 014154          358 EVA-NAAADA-PMLEIQNGN  375 (430)
Q Consensus       358 g~~-~~~~~d-~~i~~~~~~  375 (430)
                      |.+ +++..| .-|++|...
T Consensus       629 gD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  629 GDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             CCEEEEEEecCceEEEEEch
Confidence            999 666655 788888654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=7.8e-30  Score=204.29  Aligned_cols=286  Identities=15%  Similarity=0.204  Sum_probs=230.6

Q ss_pred             cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCc
Q 014154           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (430)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  124 (430)
                      +.+|+.+++-+.+    +.+|++|.+++.|.++.||-..+|+.+.++.+|        .+.|-++.+-...        .
T Consensus         6 l~GHERplTqiKy----N~eGDLlFscaKD~~~~vw~s~nGerlGty~GH--------tGavW~~Did~~s--------~   65 (327)
T KOG0643|consen    6 LQGHERPLTQIKY----NREGDLLFSCAKDSTPTVWYSLNGERLGTYDGH--------TGAVWCCDIDWDS--------K   65 (327)
T ss_pred             cccCccccceEEe----cCCCcEEEEecCCCCceEEEecCCceeeeecCC--------CceEEEEEecCCc--------c
Confidence            5679999665555    447889999999999999999899999998875        3466655544333        4


Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC-----CCeEEEEECCC------
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDK------  193 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~------  193 (430)
                      .+++++.|.++++|++....        .+..|..  +..|..+.|++++++++....     .+.|.++|++.      
T Consensus        66 ~liTGSAD~t~kLWDv~tGk--------~la~~k~--~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~  135 (327)
T KOG0643|consen   66 HLITGSADQTAKLWDVETGK--------QLATWKT--NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID  135 (327)
T ss_pred             eeeeccccceeEEEEcCCCc--------EEEEeec--CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence            89999999999999998665        5666654  688999999999999887765     35699999973      


Q ss_pred             -CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCE
Q 014154          194 -CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN  272 (430)
Q Consensus       194 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~  272 (430)
                       .++...+..+.         +.++.+-|  .|-+.+|++|..||.|.+||++++...+.....|+..|+.+.++||..+
T Consensus       136 s~ep~~kI~t~~---------skit~a~W--g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~  204 (327)
T KOG0643|consen  136 SEEPYLKIPTPD---------SKITSALW--GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY  204 (327)
T ss_pred             ccCceEEecCCc---------cceeeeee--cccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce
Confidence             33455555443         66888999  8999999999999999999999988778888889999999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE--EECCCC------------ceeeE
Q 014154          273 IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF--WDIKTR------------QLLSA  338 (430)
Q Consensus       273 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i--wd~~~~------------~~~~~  338 (430)
                      +++++.|.+.++||.++.+++.++..  ..+|++.+++|...+++.|+.....-|  =+.+.|            +.+..
T Consensus       205 FiT~s~Dttakl~D~~tl~v~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr  282 (327)
T KOG0643|consen  205 FITGSKDTTAKLVDVRTLEVLKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR  282 (327)
T ss_pred             EEecccCccceeeeccceeeEEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence            99999999999999999999999987  679999999998887777764332222  112223            23333


Q ss_pred             EEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          339 VFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       339 ~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                        .++|.+. |++++|+|+|+. ++|+.||.|++...+.
T Consensus       283 --vkGHFGP-INsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  283 --VKGHFGP-INSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             --ccccccC-cceeEECCCCcccccCCCCceEEEEEecc
Confidence              5688655 699999999998 9999999999987654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=2.4e-29  Score=234.20  Aligned_cols=279  Identities=11%  Similarity=0.164  Sum_probs=233.6

Q ss_pred             cCCCCCCCcceeeecCCCceEEEEccCCCCCcceeeee-cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC
Q 014154            7 LECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (430)
Q Consensus         7 ~~~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~   85 (430)
                      +.|..-.+..+++++.+.+|++|+...+     .++.. +.+|.+.+..+++..    -+++|++|+.|.+++|||..+|
T Consensus       211 ~~~~q~~~~~~~~~s~~~tl~~~~~~~~-----~~i~~~l~GH~g~V~~l~~~~----~~~~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  211 VLCLQLHDGFFKSGSDDSTLHLWDLNNG-----YLILTRLVGHFGGVWGLAFPS----GGDKLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             hhhheeecCeEEecCCCceeEEeecccc-----eEEEeeccCCCCCceeEEEec----CCCEEEEEecCCcEEeEecCCC
Confidence            3344444678999999999999999987     66666 999999988777754    3468999999999999999999


Q ss_pred             cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (430)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i  165 (430)
                      ++...+.+|..        .+..+...+          ..+++++.|.+++||++....        .+.+.. .|...|
T Consensus       282 ~C~~~l~gh~s--------tv~~~~~~~----------~~~~sgs~D~tVkVW~v~n~~--------~l~l~~-~h~~~V  334 (537)
T KOG0274|consen  282 ECTHSLQGHTS--------SVRCLTIDP----------FLLVSGSRDNTVKVWDVTNGA--------CLNLLR-GHTGPV  334 (537)
T ss_pred             cEEEEecCCCc--------eEEEEEccC----------ceEeeccCCceEEEEeccCcc--------eEEEec-cccccE
Confidence            99999987522        443333322          477788999999999997433        555555 388999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  245 (430)
                      .++.++  +.++++|+.|++|++||+.+++++..+.+|.         .+|.++.+  .+. ..+++|+.|++|++||++
T Consensus       335 ~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~---------~~V~sl~~--~~~-~~~~Sgs~D~~IkvWdl~  400 (537)
T KOG0274|consen  335 NCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT---------GRVYSLIV--DSE-NRLLSGSLDTTIKVWDLR  400 (537)
T ss_pred             EEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCc---------ceEEEEEe--cCc-ceEEeeeeccceEeecCC
Confidence            999997  8999999999999999999999999999976         88999988  332 899999999999999999


Q ss_pred             CCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcE
Q 014154          246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL  325 (430)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i  325 (430)
                      +...++..+.+|.+-+..+.+  .+++|++++.|++|++||..+++++..+.+++...|..+++.  ...+++++.||.+
T Consensus       401 ~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~  476 (537)
T KOG0274|consen  401 TKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSV  476 (537)
T ss_pred             chhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCee
Confidence            973568999999988877665  467999999999999999999999999998436888888885  4678899999999


Q ss_pred             EEEECCCCceeeEE
Q 014154          326 RFWDIKTRQLLSAV  339 (430)
Q Consensus       326 ~iwd~~~~~~~~~~  339 (430)
                      ++||++++++...+
T Consensus       477 ~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  477 KLWDLRSGTLIRTL  490 (537)
T ss_pred             EEEecccCchhhhh
Confidence            99999999988874

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.9e-29  Score=230.29  Aligned_cols=290  Identities=14%  Similarity=0.156  Sum_probs=228.8

Q ss_pred             CcccCCCCCCCc--ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEec
Q 014154            4 TTTLECPGCPPL--RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN   81 (430)
Q Consensus         4 ~~~~~~~~~~~~--~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd   81 (430)
                      +..+......|.  .++++--.|.|.+||.+-+     .++.+|.+|+++|+.+.  |  +|+++++++|+.|-.|+||+
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~-----tli~rFdeHdGpVRgv~--F--H~~qplFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG-----TLIDRFDEHDGPVRGVD--F--HPTQPLFVSGGDDYKIKVWN   79 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhh-----hHHhhhhccCCccceee--e--cCCCCeEEecCCccEEEEEe
Confidence            344555566663  4788889999999999988     89999999999976544  4  88999999999999999999


Q ss_pred             CCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC
Q 014154           82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA  161 (430)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~  161 (430)
                      +.+.+++.++.+|        .+.+..+.+.+..        ..+++++.|.+++||+.....        .|.+.. .|
T Consensus        80 Yk~rrclftL~GH--------lDYVRt~~FHhey--------PWIlSASDDQTIrIWNwqsr~--------~iavlt-GH  134 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGH--------LDYVRTVFFHHEY--------PWILSASDDQTIRIWNWQSRK--------CIAVLT-GH  134 (1202)
T ss_pred             cccceehhhhccc--------cceeEEeeccCCC--------ceEEEccCCCeEEEEeccCCc--------eEEEEe-cC
Confidence            9999999888775        3466655554443        499999999999999976443        555554 78


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC--------CCC--CCC----------CCcCCcceeEEEE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP--------PPK--NSL----------GIFTPTWFTSAAF  221 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--------~~~--~~~----------~~~~~~~v~~~~~  221 (430)
                      ...|.|..|+|...++++++.|.+|++||+..-+......+        .+.  .-+          --.|...|+-++|
T Consensus       135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf  214 (1202)
T KOG0292|consen  135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF  214 (1202)
T ss_pred             ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence            89999999999999999999999999999964221111000        000  000          0123356888899


Q ss_pred             eecCCCCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC
Q 014154          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC  300 (430)
Q Consensus       222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  300 (430)
                        +|.-.+|++|+.|..|++|.+...+. .+.+..+|...|.++-|+|...+|++.++|++|++||+...+.+++|+.. 
T Consensus       215 --hpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrre-  291 (1202)
T KOG0292|consen  215 --HPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-  291 (1202)
T ss_pred             --cCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeecc-
Confidence              78889999999999999999986432 25567889999999999999999999999999999999999999999876 


Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ..+.+.++-+|..++++.| .|+-+.||.++
T Consensus       292 ndRFW~laahP~lNLfAAg-HDsGm~VFkle  321 (1202)
T KOG0292|consen  292 NDRFWILAAHPELNLFAAG-HDSGMIVFKLE  321 (1202)
T ss_pred             CCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence            6789999999999877766 45556666665

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-29  Score=199.05  Aligned_cols=265  Identities=14%  Similarity=0.114  Sum_probs=219.4

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..++|++.|.+||+|++..+     .+++++.+|...|.-.+.++|++    .+++++.|..|.+||+.+|+..+.+.+|
T Consensus        30 nY~ltcGsdrtvrLWNp~rg-----~liktYsghG~EVlD~~~s~Dns----kf~s~GgDk~v~vwDV~TGkv~Rr~rgH  100 (307)
T KOG0316|consen   30 NYCLTCGSDRTVRLWNPLRG-----ALIKTYSGHGHEVLDAALSSDNS----KFASCGGDKAVQVWDVNTGKVDRRFRGH  100 (307)
T ss_pred             CEEEEcCCCceEEeeccccc-----ceeeeecCCCceeeecccccccc----ccccCCCCceEEEEEcccCeeeeecccc
Confidence            56889999999999999998     89999999999977777777555    6999999999999999999999998875


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                              ...+..+.+....        ..+++++.|..+++|+....      ...+|++++. ....|.++.++  +
T Consensus       101 --------~aqVNtV~fNees--------SVv~SgsfD~s~r~wDCRS~------s~ePiQilde-a~D~V~Si~v~--~  155 (307)
T KOG0316|consen  101 --------LAQVNTVRFNEES--------SVVASGSFDSSVRLWDCRSR------SFEPIQILDE-AKDGVSSIDVA--E  155 (307)
T ss_pred             --------cceeeEEEecCcc--------eEEEeccccceeEEEEcccC------CCCccchhhh-hcCceeEEEec--c
Confidence                    3477766665544        48999999999999997643      2347777773 35667777774  6


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      ..|++|+.||+++.||++.|+....+-+           .+|+++.|  +++++..+.++.|+++++.|-.+++ .+..+
T Consensus       156 heIvaGS~DGtvRtydiR~G~l~sDy~g-----------~pit~vs~--s~d~nc~La~~l~stlrLlDk~tGk-lL~sY  221 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKGTLSSDYFG-----------HPITSVSF--SKDGNCSLASSLDSTLRLLDKETGK-LLKSY  221 (307)
T ss_pred             cEEEeeccCCcEEEEEeecceeehhhcC-----------CcceeEEe--cCCCCEEEEeeccceeeecccchhH-HHHHh
Confidence            7899999999999999999888766655           56999999  8999999999999999999999976 57888


Q ss_pred             eecCCCeE--EEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC-eEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154          255 DFRETPIK--AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS-IRSIARHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       255 ~~~~~~i~--~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~s~~~dg~i~iwd  329 (430)
                      ++|...-.  ..+++.....+++|++||.|++||+.....+..+..+ ... |..+.++|....|+++.. +.+..|-
T Consensus       222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~-~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~  297 (307)
T KOG0316|consen  222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVV-STVIVTDLSCHPTMDDFITATG-HGDLFWY  297 (307)
T ss_pred             cccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccC-CceeEEeeecccCccceeEecC-Cceecee
Confidence            88865332  3456667789999999999999999999999999887 555 899999999888888754 4466664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.4e-28  Score=246.81  Aligned_cols=274  Identities=14%  Similarity=0.145  Sum_probs=208.2

Q ss_pred             cceeeecCCCceEEEEccCCC---CCcceeeeecCCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCCCcccce
Q 014154           15 LRALTFDSLGLIKVIEARGEH---GGVPKVVERWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVA   90 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~   90 (430)
                      -.++||+.||.|+||+.....   .........+.. ...  +..++|  +| ++.+||+++.||+|+|||+.+++.+..
T Consensus       496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~--v~~l~~--~~~~~~~las~~~Dg~v~lWd~~~~~~~~~  570 (793)
T PLN00181        496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSK--LSGICW--NSYIKSQVASSNFEGVVQVWDVARSQLVTE  570 (793)
T ss_pred             CEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCc--eeeEEe--ccCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            458899999999999986420   000011122332 233  334444  32 467899999999999999998887777


Q ss_pred             eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (430)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~  170 (430)
                      +.+        |.+.+.++.+.+...       ..+++++.|+.+++|++....        .+..+.  +...+.++.|
T Consensus       571 ~~~--------H~~~V~~l~~~p~~~-------~~L~Sgs~Dg~v~iWd~~~~~--------~~~~~~--~~~~v~~v~~  625 (793)
T PLN00181        571 MKE--------HEKRVWSIDYSSADP-------TLLASGSDDGSVKLWSINQGV--------SIGTIK--TKANICCVQF  625 (793)
T ss_pred             ecC--------CCCCEEEEEEcCCCC-------CEEEEEcCCCEEEEEECCCCc--------EEEEEe--cCCCeEEEEE
Confidence            654        345788888865443       589999999999999986432        333333  3467889999


Q ss_pred             c-CCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC-
Q 014154          171 D-ISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-  247 (430)
Q Consensus       171 ~-~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-  247 (430)
                      + +++.+|++|+.||.|++||+++.. .+..+..|.         ..|.++.|  . ++.+|++++.|++|++||++.. 
T Consensus       626 ~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~---------~~V~~v~f--~-~~~~lvs~s~D~~ikiWd~~~~~  693 (793)
T PLN00181        626 PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS---------KTVSYVRF--V-DSSTLVSSSTDNTLKLWDLSMSI  693 (793)
T ss_pred             eCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC---------CCEEEEEE--e-CCCEEEEEECCCEEEEEeCCCCc
Confidence            5 579999999999999999998754 344444443         67999999  4 6789999999999999999743 


Q ss_pred             ----CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee------------CCCCCCeEEEEecC
Q 014154          248 ----RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------------GKCSGSIRSIARHP  311 (430)
Q Consensus       248 ----~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~v~~i~~~~  311 (430)
                          ..++..+.+|...+.+++|+|++.+|++|+.|+.|++|+......+..+.            .++...|.+++|+|
T Consensus       694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG  773 (793)
T ss_pred             cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence                23577899999999999999999999999999999999987665432221            11245699999999


Q ss_pred             CCCeEEEEeCCCcEEEEEC
Q 014154          312 TLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       312 ~~~~l~s~~~dg~i~iwd~  330 (430)
                      ++.+|++|+.||.|+||++
T Consensus       774 ~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        774 QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCeEEEecCCCcEEEEec
Confidence            9999999999999999986

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.7e-29  Score=233.04  Aligned_cols=275  Identities=16%  Similarity=0.230  Sum_probs=226.2

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecC-CCCcccceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP-LNGDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~-~~~~~~~~~~~   93 (430)
                      ..+++++.++.+++|+......   .+...+.+|...|.  .++|  +|+|.++++++.|++|+|||+ ..+..+.++.+
T Consensus       172 ~~l~~~~~~~~i~~~~~~~~~~---~~~~~l~~h~~~v~--~~~f--s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g  244 (456)
T KOG0266|consen  172 RALAAASSDGLIRIWKLEGIKS---NLLRELSGHTRGVS--DVAF--SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG  244 (456)
T ss_pred             CeEEEccCCCcEEEeecccccc---hhhcccccccccee--eeEE--CCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence            4588889999999999976511   25566677888854  5555  678889999999999999999 55678888776


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                      |        ...+.++.+.+...        .+++++.|++++||++....        .++.+. .|...|.+++|+++
T Consensus       245 H--------~~~v~~~~f~p~g~--------~i~Sgs~D~tvriWd~~~~~--------~~~~l~-~hs~~is~~~f~~d  299 (456)
T KOG0266|consen  245 H--------STYVTSVAFSPDGN--------LLVSGSDDGTVRIWDVRTGE--------CVRKLK-GHSDGISGLAFSPD  299 (456)
T ss_pred             C--------CCceEEEEecCCCC--------EEEEecCCCcEEEEeccCCe--------EEEeee-ccCCceEEEEECCC
Confidence            5        45777777776553        99999999999999987532        666666 67889999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCe--eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  251 (430)
                      +++|++++.|+.|++||+.++.  +...+..+...       ..++++.|  +|++.+|++++.|+.+++||+..+.. .
T Consensus       300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~~f--sp~~~~ll~~~~d~~~~~w~l~~~~~-~  369 (456)
T KOG0266|consen  300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS-------APVTSVQF--SPNGKYLLSASLDRTLKLWDLRSGKS-V  369 (456)
T ss_pred             CCEEEEcCCCccEEEEECCCCceeeeecccCCCCC-------CceeEEEE--CCCCcEEEEecCCCeEEEEEccCCcc-e
Confidence            9999999999999999999988  44555544311       15899999  89999999999999999999998664 6


Q ss_pred             EEEeecCCC---eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEE
Q 014154          252 MSFDFRETP---IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLR  326 (430)
Q Consensus       252 ~~~~~~~~~---i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~  326 (430)
                      ..+.+|...   +.+..+++.+.++++|+.|+.|++||+.++..+..+.+|....+..+.++|...++++++  .|+.++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~  449 (456)
T KOG0266|consen  370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIR  449 (456)
T ss_pred             eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEE
Confidence            777777664   344455789999999999999999999999999999987456789999999999999998  789999


Q ss_pred             EEECC
Q 014154          327 FWDIK  331 (430)
Q Consensus       327 iwd~~  331 (430)
                      +|...
T Consensus       450 ~w~~~  454 (456)
T KOG0266|consen  450 LWKYD  454 (456)
T ss_pred             EecCC
Confidence            99754

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.6e-30  Score=234.13  Aligned_cols=306  Identities=18%  Similarity=0.184  Sum_probs=208.3

Q ss_pred             eeecC-CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec-cCCCCCCC-CCCceEEEEEeecCccc
Q 014154           42 VERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-AGDSGAQP-EDDGIVGLHLFKRQREE  118 (430)
Q Consensus        42 ~~~~~-~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~  118 (430)
                      .+.+. +|.+.  |.++.|  ++||+|||+|+.||.|+||.+........-.. ..+..+.. ....+..+..-. ....
T Consensus       259 ~Qe~~~ah~ga--Iw~mKF--S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~-~~~~  333 (712)
T KOG0283|consen  259 VQEISNAHKGA--IWAMKF--SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSE-EKIS  333 (712)
T ss_pred             eeccccccCCc--EEEEEe--CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccc-cccc
Confidence            34555 68888  566666  88999999999999999999865332111110 00000000 000000000000 0000


Q ss_pred             ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 014154          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (430)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  198 (430)
                        ......-.+.....     +.+...+..-.+.+++.|. .|.+.|..+.|+ ..++|++++.|.+|+||++...+++.
T Consensus       334 --~~~s~~~~~~~s~~-----~~~p~~~f~f~ekP~~ef~-GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~  404 (712)
T KOG0283|consen  334 --SRTSSSRKGSQSPC-----VLLPLKAFVFSEKPFCEFK-GHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLK  404 (712)
T ss_pred             --ccccccccccCCcc-----ccCCCccccccccchhhhh-ccchhheecccc-cCCeeEeccccccEEeecCCCcceee
Confidence              00000000011111     1111112223344666665 788999999999 46689999999999999999988888


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (430)
                      .+..          .+.|+|++|+ +-|.++|++|+-|+.|+||++...+  +.....-..-|++++|.|||++.++|+.
T Consensus       405 ~F~H----------ndfVTcVaFn-PvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~  471 (712)
T KOG0283|consen  405 VFSH----------NDFVTCVAFN-PVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTF  471 (712)
T ss_pred             EEec----------CCeeEEEEec-ccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEe
Confidence            7764          3889999996 4578899999999999999998733  4444444479999999999999999999


Q ss_pred             CCcEEEEEccCCeEEeeeeCC-------CCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeecccc-ceE
Q 014154          279 SGDLASVDIRTGKLLGCFIGK-------CSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLN-EVV  349 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v  349 (430)
                      +|.+++|++...+....+.-+       ....|+++.|.|.. ..|++.+.|..|||||.++..++..  ++|... ..-
T Consensus       472 ~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K--fKG~~n~~SQ  549 (712)
T KOG0283|consen  472 NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK--FKGFRNTSSQ  549 (712)
T ss_pred             ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh--hcccccCCcc
Confidence            999999999887765554321       02279999999855 3567778999999999988888887  444422 223


Q ss_pred             Eeeeccccccc-cccCCCCceEecCCCC
Q 014154          350 FDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       350 ~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ....|+.||++ +++++|..|++|+.+.
T Consensus       550 ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  550 ISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence            67899999999 9999999999999744

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.5e-28  Score=197.29  Aligned_cols=244  Identities=11%  Similarity=0.144  Sum_probs=198.8

Q ss_pred             CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE
Q 014154          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (430)
Q Consensus       101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~  180 (430)
                      .+.+.+-.+.+.+...       ..+++|+.+..+++|+......     -....+.+-.|...|.+++|+|.|++|+++
T Consensus        12 gh~~r~W~~awhp~~g-------~ilAscg~Dk~vriw~~~~~~s-----~~ck~vld~~hkrsVRsvAwsp~g~~La~a   79 (312)
T KOG0645|consen   12 GHKDRVWSVAWHPGKG-------VILASCGTDKAVRIWSTSSGDS-----WTCKTVLDDGHKRSVRSVAWSPHGRYLASA   79 (312)
T ss_pred             CCCCcEEEEEeccCCc-------eEEEeecCCceEEEEecCCCCc-----EEEEEeccccchheeeeeeecCCCcEEEEe
Confidence            3455666666655422       3688999999999998763110     112334444688999999999999999999


Q ss_pred             eCCCeEEEEECCC--CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC--cceEEEee
Q 014154          181 GKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDF  256 (430)
Q Consensus       181 ~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~  256 (430)
                      +.|.++.||.-..  .+++..+.+|.         ..|.+++|  +++|++||+|+.|.+|-||......  .....++.
T Consensus        80 SFD~t~~Iw~k~~~efecv~~lEGHE---------nEVK~Vaw--s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~  148 (312)
T KOG0645|consen   80 SFDATVVIWKKEDGEFECVATLEGHE---------NEVKCVAW--SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE  148 (312)
T ss_pred             eccceEEEeecCCCceeEEeeeeccc---------cceeEEEE--cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence            9999999998764  45677788876         77999999  8999999999999999999998433  35678899


Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc---CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR---TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      |...|..+.|+|...+|++++.|++|++|.-.   .-.+++++.+| ...|.+++|+|.|..|++++.|++|+||-..+.
T Consensus       149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~-~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~  227 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH-ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD  227 (312)
T ss_pred             ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCc-cceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence            99999999999999999999999999999876   34688999998 789999999999999999999999999986521


Q ss_pred             ceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          334 QLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                             +.+..+..++.++|. +|.+++++.|+.|++|....
T Consensus       228 -------~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  228 -------LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             -------cchhcccceEeeeec-ccceEeccCCCEEEEEEecC
Confidence                   222224557899999 88889999999999997663

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=2.6e-30  Score=215.45  Aligned_cols=288  Identities=13%  Similarity=0.148  Sum_probs=226.8

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCC-ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  118 (430)
                      .++..+.+|.+.|.+++-.+    .. ..+|+|+.||.|+|||+.+..++..++.|        .+.+.++.+-.     
T Consensus        57 PFv~~L~gHrdGV~~lakhp----~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH--------~G~V~Gi~v~~-----  119 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHP----NKLSTVASGSCDGEVKIWNLSQRECIRTFKAH--------EGLVRGICVTQ-----  119 (433)
T ss_pred             cchhhccccccccchhhcCc----chhhhhhccccCceEEEEehhhhhhhheeecc--------cCceeeEEecc-----
Confidence            46667788999988776644    32 46899999999999999988888887764        45677776654     


Q ss_pred             ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 014154          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (430)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~  198 (430)
                           ..+++++.|.+++.|.+...         .++.+..  ...+..+.-+..++.+++++.+  |.|||.....++.
T Consensus       120 -----~~~~tvgdDKtvK~wk~~~~---------p~~tilg--~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~  181 (433)
T KOG0268|consen  120 -----TSFFTVGDDKTVKQWKIDGP---------PLHTILG--KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVS  181 (433)
T ss_pred             -----cceEEecCCcceeeeeccCC---------cceeeec--cccccccccccccccccccCce--eeecccccCCccc
Confidence                 37899999999999987642         3444432  3556667766677888888764  9999998777777


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                      .+.-..         +.|.++.|  +|.. ..|++|..|+.|.|||+++.. |+..+.. ...-+.|+|+|.+-.+++|+
T Consensus       182 smswG~---------Dti~svkf--NpvETsILas~~sDrsIvLyD~R~~~-Pl~KVi~-~mRTN~IswnPeafnF~~a~  248 (433)
T KOG0268|consen  182 SMSWGA---------DSISSVKF--NPVETSILASCASDRSIVLYDLRQAS-PLKKVIL-TMRTNTICWNPEAFNFVAAN  248 (433)
T ss_pred             eeecCC---------CceeEEec--CCCcchheeeeccCCceEEEecccCC-ccceeee-eccccceecCccccceeecc
Confidence            666543         66899999  5644 577888899999999999865 5554443 24567899999888889999


Q ss_pred             CCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          278 GSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       278 ~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      +|..++.||++..+ ++..+.+| .+.|.+++|||.|+-+++||.|.+|+||.++.+.....+..  ..=..|+++.||-
T Consensus       249 ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~  325 (433)
T KOG0268|consen  249 EDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSM  325 (433)
T ss_pred             ccccceehhhhhhcccchhhccc-ceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEec
Confidence            99999999999754 57888888 89999999999999999999999999999987766554311  1112379999999


Q ss_pred             cccc-cccCCCCceEecCCCCCc
Q 014154          357 KEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       357 ~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                      |.++ ++|++|+.|++|......
T Consensus       326 Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  326 DSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             cccEEEecCCCcceeeeecchhh
Confidence            9999 999999999999987643

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=3.7e-28  Score=202.86  Aligned_cols=292  Identities=16%  Similarity=0.238  Sum_probs=235.0

Q ss_pred             eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      -+..|..|..+  +.+++.  +|+.+++|+|+.|..-.||++.+|.....+.+        |.+.++++.|....     
T Consensus        56 S~~tF~~H~~s--vFavsl--~P~~~l~aTGGgDD~AflW~~~~ge~~~eltg--------HKDSVt~~~Fshdg-----  118 (399)
T KOG0296|consen   56 SLVTFDKHTDS--VFAVSL--HPNNNLVATGGGDDLAFLWDISTGEFAGELTG--------HKDSVTCCSFSHDG-----  118 (399)
T ss_pred             ceeehhhcCCc--eEEEEe--CCCCceEEecCCCceEEEEEccCCcceeEecC--------CCCceEEEEEccCc-----
Confidence            45678889999  455555  67778999999999999999999997777766        45688877776554     


Q ss_pred             ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                         .+++++..+|.+.||.......          .|.+ .....|.=+.|+|.+..|+.|+.||.+.+|.+.+......
T Consensus       119 ---tlLATGdmsG~v~v~~~stg~~----------~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv  185 (399)
T KOG0296|consen  119 ---TLLATGDMSGKVLVFKVSTGGE----------QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKV  185 (399)
T ss_pred             ---eEEEecCCCccEEEEEcccCce----------EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeE
Confidence               4899999999999999765432          2222 2346778899999999999999999999999998777777


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEEeC
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~  278 (430)
                      +.+|.         .++++-.|  .|+|++++++..||+|++|++.++. |+..+... .....++.++..+..++.|+.
T Consensus       186 ~~Gh~---------~~ct~G~f--~pdGKr~~tgy~dgti~~Wn~ktg~-p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~  253 (399)
T KOG0296|consen  186 MSGHN---------SPCTCGEF--IPDGKRILTGYDDGTIIVWNPKTGQ-PLHKITQAEGLELPCISLNLAGSTLTKGNS  253 (399)
T ss_pred             ecCCC---------CCcccccc--cCCCceEEEEecCceEEEEecCCCc-eeEEecccccCcCCccccccccceeEeccC
Confidence            77765         77899999  7899999999999999999999976 56666532 346788999999999999999


Q ss_pred             CCcEEEEEccCCeEEeeeeC-------CCCCCeEEEEe---cCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccce
Q 014154          279 SGDLASVDIRTGKLLGCFIG-------KCSGSIRSIAR---HPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV  348 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~~~~~-------~~~~~v~~i~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  348 (430)
                      ++.+++-+..+++.+....+       .+...+.++.+   +..-++.|+|+.||+|.|||+...++.+.+.   | ...
T Consensus       254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~---h-e~~  329 (399)
T KOG0296|consen  254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE---H-EDG  329 (399)
T ss_pred             CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc---C-CCc
Confidence            99999999999998877763       12444555554   4456788999999999999999888777643   4 333


Q ss_pred             EEeeeccccccccccCCCCceEecCCCCCc
Q 014154          349 VFDSAFADKEVANAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       349 v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~  378 (430)
                      |..+.|-++..+++++.+|.|+.||....+
T Consensus       330 V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  330 VTKLKWLNTDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             eEEEEEcCcchheeeccCceEEeeeccccc
Confidence            799999994444999999999999998765

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.4e-29  Score=214.53  Aligned_cols=268  Identities=16%  Similarity=0.227  Sum_probs=213.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .+|+||+.|..|++|+...+.   ..+..++.+..+++.  ++.+  .+++.++++++.|+.+++|++.+.+...++.+|
T Consensus       188 dtlatgg~Dr~Ik~W~v~~~k---~~~~~tLaGs~g~it--~~d~--d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGH  260 (459)
T KOG0288|consen  188 DTLATGGSDRIIKLWNVLGEK---SELISTLAGSLGNIT--SIDF--DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGH  260 (459)
T ss_pred             chhhhcchhhhhhhhhcccch---hhhhhhhhccCCCcc--eeee--cCCCceEEeecCCCceeeeeccchhhhhhhccc
Confidence            679999999999999998851   236677777777744  4544  567788999999999999999888877776543


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                                                                                         ...|+++.|....
T Consensus       261 -------------------------------------------------------------------tdkVt~ak~~~~~  273 (459)
T KOG0288|consen  261 -------------------------------------------------------------------TDKVTAAKFKLSH  273 (459)
T ss_pred             -------------------------------------------------------------------ccceeeehhhccc
Confidence                                                                               2233333333333


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      ..+++|+.|.+|++||+....+..++...          +.+..+..    ....+++|..|+.|++||.+... ++...
T Consensus       274 ~~vVsgs~DRtiK~WDl~k~~C~kt~l~~----------S~cnDI~~----~~~~~~SgH~DkkvRfwD~Rs~~-~~~sv  338 (459)
T KOG0288|consen  274 SRVVSGSADRTIKLWDLQKAYCSKTVLPG----------SQCNDIVC----SISDVISGHFDKKVRFWDIRSAD-KTRSV  338 (459)
T ss_pred             cceeeccccchhhhhhhhhhheecccccc----------ccccceEe----cceeeeecccccceEEEeccCCc-eeeEe
Confidence            44888999999999999887776654432          44566666    25678999999999999999865 47777


Q ss_pred             eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC---CCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       255 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ..+ +.|+++..++++..|++++.|.++.++|+++.+....+...   .....+.+.|||++.|+++||.||.|+||++.
T Consensus       339 ~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  339 PLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF  417 (459)
T ss_pred             ecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence            776 49999999999999999999999999999999888777642   12357889999999999999999999999999


Q ss_pred             CCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154          332 TRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                      ++++...+...+. ...|++++|+|.|.. ++++.++.+.+|.
T Consensus       418 tgKlE~~l~~s~s-~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  418 TGKLEKVLSLSTS-NAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CceEEEEeccCCC-CcceEEEEEcCCCchhhcccCCcceEecC
Confidence            9999988533322 336899999999999 9999999999984

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8e-28  Score=197.18  Aligned_cols=273  Identities=15%  Similarity=0.212  Sum_probs=213.2

Q ss_pred             cceeeecCCCceEEEEccCCCC-----Cccee--eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc
Q 014154           15 LRALTFDSLGLIKVIEARGEHG-----GVPKV--VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL   87 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~   87 (430)
                      |++++|+....|.-+++...+.     ..+.+  +..+..|.++++++|++.      +|+|+|+.|-+|+|||+.....
T Consensus         2 m~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~------~~~aSGssDetI~IYDm~k~~q   75 (362)
T KOG0294|consen    2 MEIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSG------PYVASGSSDETIHIYDMRKRKQ   75 (362)
T ss_pred             eeEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecc------eeEeccCCCCcEEEEeccchhh
Confidence            6789999999888888766431     11222  345667889988888765      6999999999999999998887


Q ss_pred             cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE
Q 014154           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (430)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~  167 (430)
                      +..+..|        .+.++++.++.....      ..+++|+.||.+.+|++..-        ..+..+. .|.+.|+.
T Consensus        76 lg~ll~H--------agsitaL~F~~~~S~------shLlS~sdDG~i~iw~~~~W--------~~~~slK-~H~~~Vt~  132 (362)
T KOG0294|consen   76 LGILLSH--------AGSITALKFYPPLSK------SHLLSGSDDGHIIIWRVGSW--------ELLKSLK-AHKGQVTD  132 (362)
T ss_pred             hcceecc--------ccceEEEEecCCcch------hheeeecCCCcEEEEEcCCe--------EEeeeec-ccccccce
Confidence            7776553        468888888876532      38999999999999986421        1333333 67778999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC
Q 014154          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (430)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  247 (430)
                      ++++|.+++.++.+.|+.+++||+-+|+.-+......          ..+.+.|  +|.|.+++.+..+ .|-+|.+.+.
T Consensus       133 lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~----------~at~v~w--~~~Gd~F~v~~~~-~i~i~q~d~A  199 (362)
T KOG0294|consen  133 LSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN----------KATLVSW--SPQGDHFVVSGRN-KIDIYQLDNA  199 (362)
T ss_pred             eEecCCCceEEEEcCCceeeeehhhcCccceeeccCC----------cceeeEE--cCCCCEEEEEecc-EEEEEecccH
Confidence            9999999999999999999999999887766555432          2345889  7899988887655 6889988863


Q ss_pred             CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe--cCCCCeEEEEeCCCcE
Q 014154          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIASCGLDSYL  325 (430)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~s~~~dg~i  325 (430)
                      . ....+.. ...+.|+.|- ++..|++|..|+.|.+||.....+...+.+| ..+|-++.+  .|++.+|+|+|.||.|
T Consensus       200 ~-v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I  275 (362)
T KOG0294|consen  200 S-VFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH-ENRVKDIASYTNPEHEYLVTASSDGFI  275 (362)
T ss_pred             h-Hhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc-hhheeeeEEEecCCceEEEEeccCceE
Confidence            3 2333322 2457777775 5679999999999999999999999999998 999999884  4678899999999999


Q ss_pred             EEEECCCC
Q 014154          326 RFWDIKTR  333 (430)
Q Consensus       326 ~iwd~~~~  333 (430)
                      +|||++..
T Consensus       276 ~vWd~~~~  283 (362)
T KOG0294|consen  276 KVWDIDME  283 (362)
T ss_pred             EEEEcccc
Confidence            99999865

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=2.4e-29  Score=199.62  Aligned_cols=278  Identities=16%  Similarity=0.184  Sum_probs=226.0

Q ss_pred             CCCCCC-cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc
Q 014154            9 CPGCPP-LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL   87 (430)
Q Consensus         9 ~~~~~~-~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~   87 (430)
                      +|-||. .-|++++.||.-.+-+-+++     .-+-+|.+|.+.|....+.-    +...-|+++.|=+-+|||.-+|..
T Consensus        23 s~itp~g~flisa~kd~~pmlr~g~tg-----dwigtfeghkgavw~~~l~~----na~~aasaaadftakvw~a~tgde   93 (334)
T KOG0278|consen   23 SPITPDGYFLISASKDGKPMLRNGDTG-----DWIGTFEGHKGAVWSATLNK----NATRAASAAADFTAKVWDAVTGDE   93 (334)
T ss_pred             cCCCCCceEEEEeccCCCchhccCCCC-----CcEEeeeccCcceeeeecCc----hhhhhhhhcccchhhhhhhhhhhh
Confidence            445665 56889999999999888887     78889999999966554433    344678899999999999999999


Q ss_pred             cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE
Q 014154           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (430)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~  167 (430)
                      +.+|+.          ..|....-+..+.       ..+++++.+..++|+++.....       +.+-+. .|.+.|..
T Consensus        94 lhsf~h----------khivk~~af~~ds-------~~lltgg~ekllrvfdln~p~A-------pp~E~~-ghtg~Ir~  148 (334)
T KOG0278|consen   94 LHSFEH----------KHIVKAVAFSQDS-------NYLLTGGQEKLLRVFDLNRPKA-------PPKEIS-GHTGGIRT  148 (334)
T ss_pred             hhhhhh----------hheeeeEEecccc-------hhhhccchHHHhhhhhccCCCC-------Cchhhc-CCCCccee
Confidence            998875          3444444444443       5899999999999998875432       222232 56788999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC
Q 014154          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (430)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  247 (430)
                      +.|....+.|++++.|++|++||.+++..+.++...          ..|+++.+  +++|.+|.+ ...+.|.+||..+.
T Consensus       149 v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~----------s~VtSlEv--s~dG~ilTi-a~gssV~Fwdaksf  215 (334)
T KOG0278|consen  149 VLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN----------SPVTSLEV--SQDGRILTI-AYGSSVKFWDAKSF  215 (334)
T ss_pred             EEEeccCceEEeeccCCceEEEEeccCcEEEEEecC----------CCCcceee--ccCCCEEEE-ecCceeEEeccccc
Confidence            999988999999999999999999999999888764          66899999  788877665 56778999999985


Q ss_pred             CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee-eCCCCCCeEEEEecCCCCeEEEEeCCCcEE
Q 014154          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (430)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  326 (430)
                      . ++..++.. ..|.+..++|+...+++|++|..++.||..++..+..+ ++| .++|.|+.|+|+|...++||.||+|+
T Consensus       216 ~-~lKs~k~P-~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh-~gpVhcVrFSPdGE~yAsGSEDGTir  292 (334)
T KOG0278|consen  216 G-LLKSYKMP-CNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH-FGPVHCVRFSPDGELYASGSEDGTIR  292 (334)
T ss_pred             c-ceeeccCc-cccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC-CCceEEEEECCCCceeeccCCCceEE
Confidence            5 35555543 57899999999999999999999999999999998887 777 89999999999999999999999999


Q ss_pred             EEECCCCcee
Q 014154          327 FWDIKTRQLL  336 (430)
Q Consensus       327 iwd~~~~~~~  336 (430)
                      ||.+..++..
T Consensus       293 lWQt~~~~~~  302 (334)
T KOG0278|consen  293 LWQTTPGKTY  302 (334)
T ss_pred             EEEecCCCch
Confidence            9998765543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=4.7e-28  Score=206.46  Aligned_cols=281  Identities=14%  Similarity=0.165  Sum_probs=229.2

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      +.++..  .|..+.+++|+.|..+.++|...++.+..+++|        ...|..+.+.+...        .+++++.+-
T Consensus       222 i~ald~--~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh--------~kki~~v~~~~~~~--------~v~~aSad~  283 (506)
T KOG0289|consen  222 ITALDI--IPSSSKILTGGEDKTAVLFDKPSNQILATLKGH--------TKKITSVKFHKDLD--------TVITASADE  283 (506)
T ss_pred             eeEEee--cCCCCcceecCCCCceEEEecchhhhhhhccCc--------ceEEEEEEeccchh--------heeecCCcc
Confidence            445544  444567999999999999999999999998875        33666666665543        788999999


Q ss_pred             eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  213 (430)
                      .++||++..+..        ..+. ..|..+|+.+..+|.+.||++++.|++..+.|++++..+.........       
T Consensus       284 ~i~vws~~~~s~--------~~~~-~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~-------  347 (506)
T KOG0289|consen  284 IIRVWSVPLSSE--------PTSS-RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD-------  347 (506)
T ss_pred             eEEeeccccccC--------cccc-ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc-------
Confidence            999999765432        1122 357899999999999999999999999999999999887765543111       


Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~  293 (430)
                      ..+++++|  +|||.+|.+|..|+.|++||+.++. .+..|.+|+++|..++|+.+|-+|++++.|+.|++||+|..+..
T Consensus       348 v~~ts~~f--HpDgLifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~  424 (506)
T KOG0289|consen  348 VEYTSAAF--HPDGLIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF  424 (506)
T ss_pred             ceeEEeeE--cCCceEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence            44889999  8999999999999999999999866 58899999999999999999999999999999999999998887


Q ss_pred             eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC--CCceeeEEEeeccccceEEeeeccccccc-cccCCCCceE
Q 014154          294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK--TRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLE  370 (430)
Q Consensus       294 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~  370 (430)
                      .++......++.++.|.+.|.+|+.++.|=.|++++-.  ++..+..  +..| .+..+.+.|....++ ++++.|..++
T Consensus       425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~--~~~~-sg~st~v~Fg~~aq~l~s~smd~~l~  501 (506)
T KOG0289|consen  425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE--LADH-SGLSTGVRFGEHAQYLASTSMDAILR  501 (506)
T ss_pred             ceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh--hhhc-ccccceeeecccceEEeeccchhheE
Confidence            77776534579999999999999999888777776633  4555554  4445 455689999999998 8899999988


Q ss_pred             ecCC
Q 014154          371 IQNG  374 (430)
Q Consensus       371 ~~~~  374 (430)
                      ++..
T Consensus       502 ~~a~  505 (506)
T KOG0289|consen  502 LYAL  505 (506)
T ss_pred             Eeec
Confidence            8753

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.2e-29  Score=211.59  Aligned_cols=279  Identities=13%  Similarity=0.151  Sum_probs=213.4

Q ss_pred             CCCCCCC---cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154            8 ECPGCPP---LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (430)
Q Consensus         8 ~~~~~~~---~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~   84 (430)
                      .|.+-.|   ..+++|+.||.|+|||+...     .++.+|..|.+.|.-+++..      ..+++++.|.+|+.|-+. 
T Consensus        70 ~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-----~~~~~f~AH~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~-  137 (433)
T KOG0268|consen   70 SCLAKHPNKLSTVASGSCDGEVKIWNLSQR-----ECIRTFKAHEGLVRGICVTQ------TSFFTVGDDKTVKQWKID-  137 (433)
T ss_pred             chhhcCcchhhhhhccccCceEEEEehhhh-----hhhheeecccCceeeEEecc------cceEEecCCcceeeeecc-
Confidence            4555444   56889999999999999986     77888999999977766655      347888899999999874 


Q ss_pred             CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc
Q 014154           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT  164 (430)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~  164 (430)
                      +.++.++.+-         ..+.++.-....        ..+++|+  ..+.||+.....        ++.-+... -..
T Consensus       138 ~~p~~tilg~---------s~~~gIdh~~~~--------~~FaTcG--e~i~IWD~~R~~--------Pv~smswG-~Dt  189 (433)
T KOG0268|consen  138 GPPLHTILGK---------SVYLGIDHHRKN--------SVFATCG--EQIDIWDEQRDN--------PVSSMSWG-ADS  189 (433)
T ss_pred             CCcceeeecc---------cccccccccccc--------ccccccC--ceeeecccccCC--------ccceeecC-CCc
Confidence            4555555441         111112111111        3455544  357888875333        45444432 356


Q ss_pred             eEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          165 IAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       165 i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      |.++.|+|.. ..|++++.|+.|.+||++++.++..+...          -.-+.++|  +|.+-.+++|++|..++.||
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----------mRTN~Isw--nPeafnF~~a~ED~nlY~~D  257 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----------MRTNTICW--NPEAFNFVAANEDHNLYTYD  257 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEecccCCccceeeee----------ccccceec--Cccccceeeccccccceehh
Confidence            8999999954 56777779999999999998877665432          33567899  78888899999999999999


Q ss_pred             CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                      ++....|+....+|.+.|.++.|||.|+-+++|+.|.+|+||..+.+.....+....-..|.++.||.|.+++++||.|+
T Consensus       258 mR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  258 MRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             hhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence            99988899999999999999999999999999999999999999887664444332235799999999999999999999


Q ss_pred             cEEEEECCCCceeeE
Q 014154          324 YLRFWDIKTRQLLSA  338 (430)
Q Consensus       324 ~i~iwd~~~~~~~~~  338 (430)
                      .|++|.....+.+..
T Consensus       338 nvRlWka~Aseklgv  352 (433)
T KOG0268|consen  338 NVRLWKAKASEKLGV  352 (433)
T ss_pred             ceeeeecchhhhcCC
Confidence            999999876655554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.5e-28  Score=211.28  Aligned_cols=278  Identities=15%  Similarity=0.219  Sum_probs=211.1

Q ss_pred             CCcceeeeeecCCCCCce-eEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEE
Q 014154           50 SSNCVLAASIDDSQNDPL-LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (430)
Q Consensus        50 ~~~~~~~~~~~~~p~g~~-l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  128 (430)
                      ..|..++|++    ..++ +|+.+ .-.+.||+..+......+..+        .+.+.++.+-...        ..+++
T Consensus        27 ~~vssl~fsp----~~P~d~aVt~-S~rvqly~~~~~~~~k~~srF--------k~~v~s~~fR~DG--------~Llaa   85 (487)
T KOG0310|consen   27 NSVSSLCFSP----KHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRF--------KDVVYSVDFRSDG--------RLLAA   85 (487)
T ss_pred             CcceeEecCC----CCCCceEEec-ccEEEEEecchhhhhhhHHhh--------ccceeEEEeecCC--------eEEEc
Confidence            4444455544    3322 34433 367999998777666655432        1244444443322        46777


Q ss_pred             EccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC
Q 014154          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (430)
Q Consensus       129 ~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  207 (430)
                      |...|.++|++.....        .++.++ .|..++..+.|+|. +..+++|+.|+.+++||+.+......+..|.   
T Consensus        86 GD~sG~V~vfD~k~r~--------iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~ht---  153 (487)
T KOG0310|consen   86 GDESGHVKVFDMKSRV--------ILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHT---  153 (487)
T ss_pred             cCCcCcEEEeccccHH--------HHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCc---
Confidence            8888999999843211        344444 67899999999995 4567788889999999999988766777766   


Q ss_pred             CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (430)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~  287 (430)
                            +.|.|.++. +.++..+++|+.||.|++||++.....+..++ |..+|..+.+-|.|..|++++ .+.|++||+
T Consensus       154 ------DYVR~g~~~-~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl  224 (487)
T KOG0310|consen  154 ------DYVRCGDIS-PANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDL  224 (487)
T ss_pred             ------ceeEeeccc-cCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEe
Confidence                  899999995 44566999999999999999998644455555 788999999999999999886 567999999


Q ss_pred             cCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC
Q 014154          288 RTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD  365 (430)
Q Consensus       288 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~  365 (430)
                      -+|.. +..+..| ...|+|+.+..++..|++++-|+.|++||+.+.+.++.+.+.+    .|.+++.+|+++. +.|..
T Consensus       225 ~~G~qll~~~~~H-~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~----pvLsiavs~dd~t~viGms  299 (487)
T KOG0310|consen  225 TTGGQLLTSMFNH-NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG----PVLSIAVSPDDQTVVIGMS  299 (487)
T ss_pred             cCCceehhhhhcc-cceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc----ceeeEEecCCCceEEEecc
Confidence            86554 5555556 8899999999999999999999999999999999999875544    4899999999988 88888


Q ss_pred             CCceEecCC
Q 014154          366 APMLEIQNG  374 (430)
Q Consensus       366 d~~i~~~~~  374 (430)
                      +|.+.+-+.
T Consensus       300 nGlv~~rr~  308 (487)
T KOG0310|consen  300 NGLVSIRRR  308 (487)
T ss_pred             cceeeeehh
Confidence            998877643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-28  Score=196.20  Aligned_cols=267  Identities=12%  Similarity=0.168  Sum_probs=205.7

Q ss_pred             CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-CcccceeeccCCCCCCC
Q 014154           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQP  101 (430)
Q Consensus        23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~  101 (430)
                      .|.+.|-++..+ .++. ....+.- .+.  ...++|..+. .+.+++++.||+++|||... ..++..++.|       
T Consensus        37 ~G~L~ile~~~~-~gi~-e~~s~d~-~D~--LfdV~Wse~~-e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH-------  103 (311)
T KOG0277|consen   37 NGRLFILEVTDP-KGIQ-ECQSYDT-EDG--LFDVAWSENH-ENQVIAASGDGSLRLFDLTMPSKPIHKFKEH-------  103 (311)
T ss_pred             CceEEEEecCCC-CCeE-EEEeeec-ccc--eeEeeecCCC-cceEEEEecCceEEEeccCCCCcchhHHHhh-------
Confidence            478888888643 2222 2222321 233  5556663343 35688899999999999642 3456666553       


Q ss_pred             CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEE
Q 014154          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFG  180 (430)
Q Consensus       102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~  180 (430)
                       ...+.++.+.....       ..+++++-|+++++|+.....        .++.+. .|...|...+|+| ..++++++
T Consensus       104 -~~EV~Svdwn~~~r-------~~~ltsSWD~TiKLW~~~r~~--------Sv~Tf~-gh~~~Iy~a~~sp~~~nlfas~  166 (311)
T KOG0277|consen  104 -KREVYSVDWNTVRR-------RIFLTSSWDGTIKLWDPNRPN--------SVQTFN-GHNSCIYQAAFSPHIPNLFASA  166 (311)
T ss_pred             -hhheEEeccccccc-------eeEEeeccCCceEeecCCCCc--------ceEeec-CCccEEEEEecCCCCCCeEEEc
Confidence             45777666655544       578888999999999976554        666666 6889999999999 67899999


Q ss_pred             eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC
Q 014154          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (430)
Q Consensus       181 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  260 (430)
                      +.|+++++||++.......+..|.         ..+.++.|. .-+.+.|++|+.|+.|+.||++..+.|+..+.+|+-.
T Consensus       167 Sgd~~l~lwdvr~~gk~~~i~ah~---------~Eil~cdw~-ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A  236 (311)
T KOG0277|consen  167 SGDGTLRLWDVRSPGKFMSIEAHN---------SEILCCDWS-KYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA  236 (311)
T ss_pred             cCCceEEEEEecCCCceeEEEecc---------ceeEeeccc-ccCCcEEEecCCCceEEEEehhhccccceeecCCceE
Confidence            999999999998654444466654         568999995 4467899999999999999999999999999999999


Q ss_pred             eEEEEecCCC-CEEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecC-CCCeEEEEeCCCcEEEEEC
Q 014154          261 IKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       261 i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~  330 (430)
                      |+.++|||.. ..|++++.|-+++|||...+.. +.++.. |..-+..+.||+ +..++|+++.|+.++||+.
T Consensus       237 VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~-HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  237 VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDH-HTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhc-cceEEeccccccccCceeeecccccceeeecc
Confidence            9999999965 6889999999999999986554 444554 489999999998 5578999999999999984

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=194.60  Aligned_cols=320  Identities=12%  Similarity=0.046  Sum_probs=226.4

Q ss_pred             eEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCc
Q 014154           26 IKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDG  105 (430)
Q Consensus        26 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  105 (430)
                      +.-|+.+.....-+-.+..+.+|...|+.++|+    .||++||+.+.|++|+||++.+...    +.|..+...-.-+.
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~Fs----SdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr~~R~nve~dh  134 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFS----SDGKKLATISGDRSIRLWDVRDFEN----KEHRCIRQNVEYDH  134 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEc----CCCceeEEEeCCceEEEEecchhhh----hhhhHhhccccCCC
Confidence            445655543222223345678899997766664    5888999999999999999876331    11221111111234


Q ss_pred             eEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee-----ecCCCceEEEEEcCCCCEEEEE
Q 014154          106 IVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDISEKFSLFG  180 (430)
Q Consensus       106 i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~-----~~~~~~i~~~~~~~~~~~l~~~  180 (430)
                      .+.+.+.+...       ..++++-.+..+++|.+....+-  +..-+..-|+     -.|...+..+-...++.+|+++
T Consensus       135 pT~V~FapDc~-------s~vv~~~~g~~l~vyk~~K~~dG--~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsa  205 (420)
T KOG2096|consen  135 PTRVVFAPDCK-------SVVVSVKRGNKLCVYKLVKKTDG--SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSA  205 (420)
T ss_pred             ceEEEECCCcc-------eEEEEEccCCEEEEEEeeecccC--CCCcccccccccccchhcccceEEEeecCCceEEEEe
Confidence            44456666554       46777777789999998766541  1111112222     2345667777778889999999


Q ss_pred             eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-------cceEE
Q 014154          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMS  253 (430)
Q Consensus       181 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~  253 (430)
                      +.|..|.+|++. |+.+..+...+         ..-+..+.  +|+|++|++++.--.|++|.+--++       ..+..
T Consensus       206 s~dt~i~lw~lk-Gq~L~~idtnq---------~~n~~aav--SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~  273 (420)
T KOG2096|consen  206 SLDTKICLWDLK-GQLLQSIDTNQ---------SSNYDAAV--SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFS  273 (420)
T ss_pred             cCCCcEEEEecC-Cceeeeecccc---------ccccceee--CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhe
Confidence            999999999998 88877766544         22344566  8999999999999999999864321       13567


Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC----C---eEEeee----eCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----G---KLLGCF----IGKCSGSIRSIARHPTLPIIASCGLD  322 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~----~---~~~~~~----~~~~~~~v~~i~~~~~~~~l~s~~~d  322 (430)
                      +.+|.+.|..++|+|+...+++.+.||.++|||+.-    +   +.+.+.    ... .+....+.++|+|+.|+.+. -
T Consensus       274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa-g~~p~RL~lsP~g~~lA~s~-g  351 (420)
T KOG2096|consen  274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAA-GSEPVRLELSPSGDSLAVSF-G  351 (420)
T ss_pred             eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhc-CCCceEEEeCCCCcEEEeec-C
Confidence            899999999999999999999999999999999752    1   122222    111 33445899999999887764 4


Q ss_pred             CcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154          323 SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       323 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~  378 (430)
                      ..+.+|..++|+....+ -..| ...|.+++|+++|++++...|..++++...+..
T Consensus       352 s~l~~~~se~g~~~~~~-e~~h-~~~Is~is~~~~g~~~atcGdr~vrv~~ntpg~  405 (420)
T KOG2096|consen  352 SDLKVFASEDGKDYPEL-EDIH-STTISSISYSSDGKYIATCGDRYVRVIRNTPGW  405 (420)
T ss_pred             CceEEEEcccCccchhH-HHhh-cCceeeEEecCCCcEEeeecceeeeeecCCCch
Confidence            56999999998887764 2345 566899999999999888889999999865543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.96  E-value=3.5e-28  Score=218.66  Aligned_cols=287  Identities=12%  Similarity=0.174  Sum_probs=226.7

Q ss_pred             ceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEE-EEEeecCcc
Q 014154           39 PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG-LHLFKRQRE  117 (430)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~  117 (430)
                      .++...+.+|...+..+++..     +-.+++++.||++++|+-...+.+....      +..+.+-+.. +.+...+. 
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~-----~~~i~s~sRd~t~~vw~~~~~~~l~~~~------~~~~~g~i~~~i~y~e~~~-   71 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTD-----GVCIISGSRDGTVKVWAKKGKQYLETHA------FEGPKGFIANSICYAESDK-   71 (745)
T ss_pred             ceeEEEeccCccchheeEecC-----CeEEeecCCCCceeeeeccCccccccee------cccCcceeeccceeccccC-
Confidence            356778899999987666543     2368999999999999976555444222      1222234443 34443333 


Q ss_pred             cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI  197 (430)
Q Consensus       118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  197 (430)
                            +++++++.|+.+.+|.+....        ++..+. .|...|.+++...++. +++|+.|.++++|-..  ++.
T Consensus        72 ------~~l~~g~~D~~i~v~~~~~~~--------P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~  133 (745)
T KOG0301|consen   72 ------GRLVVGGMDTTIIVFKLSQAE--------PLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELV  133 (745)
T ss_pred             ------cceEeecccceEEEEecCCCC--------chhhhh-ccccceeeeecCCcCc-eEecccccceEEecch--hhh
Confidence                  679999999999999876443        444444 7889999999877776 9999999999999875  445


Q ss_pred             EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                      ..+++|+         ..|.++++.  |++ .++||+.|.+|++|.-.   ..+.+|.+|..-|+.+++-+++ .+++++
T Consensus       134 ~~l~gH~---------asVWAv~~l--~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~-~flScs  197 (745)
T KOG0301|consen  134 YSLQGHT---------ASVWAVASL--PEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS-HFLSCS  197 (745)
T ss_pred             cccCCcc---------hheeeeeec--CCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC-CeEeec
Confidence            5566665         779999884  544 89999999999999864   3588999999999999998776 677888


Q ss_pred             CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154          278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       278 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      .||.|++|++ ++.++.++.+| +.-|+++...+++..++++++|++++||+..  .+.+.+.++   ...+|++.+-++
T Consensus       198 NDg~Ir~w~~-~ge~l~~~~gh-tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP---ttsiWsa~~L~N  270 (745)
T KOG0301|consen  198 NDGSIRLWDL-DGEVLLEMHGH-TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP---TTSIWSAKVLLN  270 (745)
T ss_pred             CCceEEEEec-cCceeeeeecc-ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC---ccceEEEEEeeC
Confidence            9999999999 89999999999 9999999977788899999999999999976  777776533   445799999999


Q ss_pred             ccccccCCCCceEecCCCCCc
Q 014154          358 EVANAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       358 g~~~~~~~d~~i~~~~~~~~~  378 (430)
                      |.+++|++||.|+||.....+
T Consensus       271 gDIvvg~SDG~VrVfT~~k~R  291 (745)
T KOG0301|consen  271 GDIVVGGSDGRVRVFTVDKDR  291 (745)
T ss_pred             CCEEEeccCceEEEEEecccc
Confidence            999999999999999887543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1.3e-28  Score=202.55  Aligned_cols=281  Identities=17%  Similarity=0.235  Sum_probs=229.6

Q ss_pred             cccCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecC--------CCCCCcceeeeeecCCCCCceeEEeecC
Q 014154            5 TTLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWG--------DPHSSNCVLAASIDDSQNDPLLAVARKN   74 (430)
Q Consensus         5 ~~~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~p~g~~l~~g~~d   74 (430)
                      ..++|....|  -.|++|+.||.|.|||..+|     ++...+.        .++.+|.  +++|  +.|...||+|+.|
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~G-----KlrKDLkYQAqd~fMMmd~aVl--ci~F--SRDsEMlAsGsqD  284 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTG-----KLRKDLKYQAQDNFMMMDDAVL--CISF--SRDSEMLASGSQD  284 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccc-----hhhhhhhhhhhcceeecccceE--EEee--cccHHHhhccCcC
Confidence            3455555544  57999999999999999987     4443332        3566644  4444  5567799999999


Q ss_pred             CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcce
Q 014154           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV  154 (430)
Q Consensus        75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i  154 (430)
                      |.|+||.+.+|.+++.|..       +|...+.++.+.....        .+++++.|.++++..+..+.        .+
T Consensus       285 GkIKvWri~tG~ClRrFdr-------AHtkGvt~l~FSrD~S--------qiLS~sfD~tvRiHGlKSGK--------~L  341 (508)
T KOG0275|consen  285 GKIKVWRIETGQCLRRFDR-------AHTKGVTCLSFSRDNS--------QILSASFDQTVRIHGLKSGK--------CL  341 (508)
T ss_pred             CcEEEEEEecchHHHHhhh-------hhccCeeEEEEccCcc--------hhhcccccceEEEeccccch--------hH
Confidence            9999999999999999874       3456888888876654        89999999999999886544        55


Q ss_pred             EEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154          155 KSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (430)
Q Consensus       155 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  234 (430)
                      +-+. .|...|+...|.++|..+++++.||+|++|+..+.+++.+++.....       ..|+++... +.+...+++|.
T Consensus       342 KEfr-GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d-------~~vnsv~~~-PKnpeh~iVCN  412 (508)
T KOG0275|consen  342 KEFR-GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD-------YPVNSVILL-PKNPEHFIVCN  412 (508)
T ss_pred             HHhc-CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc-------ccceeEEEc-CCCCceEEEEc
Confidence            5665 67889999999999999999999999999999999999888765422       457776665 55677899999


Q ss_pred             CCCcEEEEECCCCCcceEEEeec---CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154          235 NDHQVRLYDTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      ..++|.|-++.. + .++.+...   .+...+...||.|.++++.++|+.++.|...+|++..++..| ...|..++-+|
T Consensus       413 rsntv~imn~qG-Q-vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh-EkdvIGl~HHP  489 (508)
T KOG0275|consen  413 RSNTVYIMNMQG-Q-VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH-EKDVIGLTHHP  489 (508)
T ss_pred             CCCeEEEEeccc-e-EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc-cccccccccCc
Confidence            999999999985 3 46666542   345566778999999999999999999999999999999998 88899999999


Q ss_pred             CCCeEEEEeCCCcEEEEE
Q 014154          312 TLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       312 ~~~~l~s~~~dg~i~iwd  329 (430)
                      ..+.|++-+.||.+++|.
T Consensus       490 HqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  490 HQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccchhhhhcccchhhhcC
Confidence            999999999999999994

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.3e-27  Score=212.98  Aligned_cols=267  Identities=15%  Similarity=0.141  Sum_probs=215.5

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~   96 (430)
                      +++-+....|.+|+...+     ++..-...+...  +.++.|  .++|.+||+|..+|.|.|||..+.+.+..+.+   
T Consensus       190 ~laValg~~vylW~~~s~-----~v~~l~~~~~~~--vtSv~w--s~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~---  257 (484)
T KOG0305|consen  190 VLAVALGQSVYLWSASSG-----SVTELCSFGEEL--VTSVKW--SPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG---  257 (484)
T ss_pred             eEEEEecceEEEEecCCC-----ceEEeEecCCCc--eEEEEE--CCCCCEEEEeecCCeEEEEehhhccccccccC---
Confidence            444445568999999987     433333333445  555666  77899999999999999999876664444322   


Q ss_pred             CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (430)
Q Consensus        97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~  176 (430)
                                                                                     .|...|.+++|.  +..
T Consensus       258 ---------------------------------------------------------------~h~~rvg~laW~--~~~  272 (484)
T KOG0305|consen  258 ---------------------------------------------------------------SHASRVGSLAWN--SSV  272 (484)
T ss_pred             ---------------------------------------------------------------CcCceeEEEecc--Cce
Confidence                                                                           145667777886  678


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe
Q 014154          177 SLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (430)
Q Consensus       177 l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  255 (430)
                      +.+|+.++.|..+|++..+.... +..|.         ..|..+.|  ++++.++++|+.|+.+.|||... ..+...+.
T Consensus       273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~---------qeVCgLkw--s~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~  340 (484)
T KOG0305|consen  273 LSSGSRDGKILNHDVRISQHVVSTLQGHR---------QEVCGLKW--SPDGNQLASGGNDNVVFIWDGLS-PEPKFTFT  340 (484)
T ss_pred             EEEecCCCcEEEEEEecchhhhhhhhccc---------ceeeeeEE--CCCCCeeccCCCccceEeccCCC-ccccEEEe
Confidence            88999999999999988766555 45544         77999999  89999999999999999999976 44788999


Q ss_pred             ecCCCeEEEEecCC-CCEEEEEe--CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEEEEEC
Q 014154          256 FRETPIKAVAEEPD-SFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDI  330 (430)
Q Consensus       256 ~~~~~i~~~~~sp~-~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd~  330 (430)
                      .|.+.|.+++|+|- ..+||+|+  .|+.|++||..+++.+..+..  .+.|..|.|++..+-|+++.  .++.|.||++
T Consensus       341 ~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~  418 (484)
T KOG0305|consen  341 EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT--GSQVCSLIWSKKYKELLSTHGYSENQITLWKY  418 (484)
T ss_pred             ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc--CCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence            99999999999994 46888875  689999999999999988876  57999999999986666553  5678999999


Q ss_pred             CCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          331 KTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      .+.+.+..  +.+| ...|..++++|||.. ++++.|.++++|+.-..
T Consensus       419 ps~~~~~~--l~gH-~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  419 PSMKLVAE--LLGH-TSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cccceeee--ecCC-cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            99888877  7789 555899999999998 99999999999998774

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=2.2e-26  Score=215.18  Aligned_cols=258  Identities=14%  Similarity=0.075  Sum_probs=186.1

Q ss_pred             eecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCC-CceeEEeecCCeEEEecCCCCcccceeeccCCC
Q 014154           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDLRVAISNAGDS   97 (430)
Q Consensus        19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~   97 (430)
                      .|+.+|.|++|+....     ..+..+.+|...|..++  |  +|+ +++||+|+.||+|+|||+.++.....       
T Consensus        49 gGG~~gvI~L~~~~r~-----~~v~~L~gH~~~V~~la--f--sP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------  112 (568)
T PTZ00420         49 GGGLIGAIRLENQMRK-----PPVIKLKGHTSSILDLQ--F--NPCFSEILASGSEDLTIRVWEIPHNDESVK-------  112 (568)
T ss_pred             CCCceeEEEeeecCCC-----ceEEEEcCCCCCEEEEE--E--cCCCCCEEEEEeCCCeEEEEECCCCCcccc-------
Confidence            4667888999988765     56677889998855554  4  554 67999999999999999865431100       


Q ss_pred             CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE-
Q 014154           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF-  176 (430)
Q Consensus        98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~-  176 (430)
                             .+.        .                                    .+..+ ..|...|.+++|+|++.. 
T Consensus       113 -------~i~--------~------------------------------------p~~~L-~gH~~~V~sVaf~P~g~~i  140 (568)
T PTZ00420        113 -------EIK--------D------------------------------------PQCIL-KGHKKKISIIDWNPMNYYI  140 (568)
T ss_pred             -------ccc--------c------------------------------------ceEEe-ecCCCcEEEEEECCCCCeE
Confidence                   000        0                                    00111 145678999999998875 


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee
Q 014154          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (430)
Q Consensus       177 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  256 (430)
                      |++++.|++|++||+++++....+..+          ..|.+++|  +|+|.+|++++.|+.|+|||++++. .+..+.+
T Consensus       141 LaSgS~DgtIrIWDl~tg~~~~~i~~~----------~~V~Slsw--spdG~lLat~s~D~~IrIwD~Rsg~-~i~tl~g  207 (568)
T PTZ00420        141 MCSSGFDSFVNIWDIENEKRAFQINMP----------KKLSSLKW--NIKGNLLSGTCVGKHMHIIDPRKQE-IASSFHI  207 (568)
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEEecC----------CcEEEEEE--CCCCCEEEEEecCCEEEEEECCCCc-EEEEEec
Confidence            568999999999999998877665422          56899999  8999999999999999999999865 4778889


Q ss_pred             cCCCeEE-----EEecCCCCEEEEEeCCC----cEEEEEccC-CeEEeeeeCCC-CCCeEEEEecCCCCeEEEEeCCCcE
Q 014154          257 RETPIKA-----VAEEPDSFNIYIGNGSG----DLASVDIRT-GKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYL  325 (430)
Q Consensus       257 ~~~~i~~-----~~~sp~~~~l~~~~~d~----~i~iwd~~~-~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~i  325 (430)
                      |.+.+.+     ..|++++.+|++++.|+    .|+|||+++ .+++..+..+. .+.+......+++.++++|+.|+.|
T Consensus       208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence            9876543     23568889999988774    799999995 55665554321 2333344445668899999999999


Q ss_pred             EEEECCCCceeeEEEeeccccceEEeeecccccc
Q 014154          326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV  359 (430)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  359 (430)
                      ++|++..+... .+ -.........+++|.|...
T Consensus       288 r~~e~~~~~~~-~l-~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        288 RYYQHSLGSIR-KV-NEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             EEEEccCCcEE-ee-cccccCCCccceEEccccc
Confidence            99999876432 22 1222344467888988755

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5e-28  Score=216.13  Aligned_cols=295  Identities=12%  Similarity=0.178  Sum_probs=221.2

Q ss_pred             eecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEE
Q 014154           58 SIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM  137 (430)
Q Consensus        58 ~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v  137 (430)
                      -..+.|.++||++|+.||.|++|++.......+-.  ....+..|.+.+..+.+....        ..+++++.|-++.+
T Consensus        30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--~~asme~HsDWVNDiiL~~~~--------~tlIS~SsDtTVK~   99 (735)
T KOG0308|consen   30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--YIASMEHHSDWVNDIILCGNG--------KTLISASSDTTVKV   99 (735)
T ss_pred             ccccCCCCceEEecCCCceEEEeccccccCCcccc--hhhhhhhhHhHHhhHHhhcCC--------CceEEecCCceEEE
Confidence            33456788899999999999999986432210000  011122345566655555443        38999999999999


Q ss_pred             EEeeecCccccCCCcceEEeeecCCCceEEEEE-cCCCCEEEEEeCCCeEEEEECCCC--eeeEeeCCCCCCCCCCcCCc
Q 014154          138 RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-DISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPT  214 (430)
Q Consensus       138 ~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~  214 (430)
                      |+......      ..+.... .|...|.|+++ .++..++++|+.|+.|.+||++++  +.+.++.......+...+..
T Consensus       100 W~~~~~~~------~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~  172 (735)
T KOG0308|consen  100 WNAHKDNT------FCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD  172 (735)
T ss_pred             eecccCcc------hhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence            99764321      1112222 46789999999 778899999999999999999987  34444444444444434557


Q ss_pred             ceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe
Q 014154          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  294 (430)
                      .|.+++.  ++.+..|++|+..+.+++||.++.++ +..+.+|...|.++..++||..+++++.||+|++||+...+++.
T Consensus       173 siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~  249 (735)
T KOG0308|consen  173 SIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA  249 (735)
T ss_pred             ceeeeec--CCcceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence            8999999  88899999999999999999999765 78888999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154          295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       295 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                      ++..| ...|+++..+|+-..+++|+.||.|..=|+++.+....+ ++.  .+.+..+..+....- -+++.|+.|+-|.
T Consensus       250 T~~vH-~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tli-ck~--daPv~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  250 TYIVH-KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLI-CKE--DAPVLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             eEEec-cCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEe-ecC--CCchhhhhhccccCCceeeeccccceecC
Confidence            99998 778999999999999999999999999999885333222 211  223455555533333 5566777787776


Q ss_pred             CCC
Q 014154          374 GND  376 (430)
Q Consensus       374 ~~~  376 (430)
                      ...
T Consensus       326 ~~~  328 (735)
T KOG0308|consen  326 LEP  328 (735)
T ss_pred             Ccc
Confidence            654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=2.8e-27  Score=220.38  Aligned_cols=265  Identities=15%  Similarity=0.215  Sum_probs=223.1

Q ss_pred             ceeEEeecCCeEEEecCCCCcccce-eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  144 (430)
                      .++++++.+.+|++|+..++..+.. +.+        |.+.+.++.+....        ..+++|+.|.+++||++....
T Consensus       219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~G--------H~g~V~~l~~~~~~--------~~lvsgS~D~t~rvWd~~sg~  282 (537)
T KOG0274|consen  219 GFFKSGSDDSTLHLWDLNNGYLILTRLVG--------HFGGVWGLAFPSGG--------DKLVSGSTDKTERVWDCSTGE  282 (537)
T ss_pred             CeEEecCCCceeEEeecccceEEEeeccC--------CCCCceeEEEecCC--------CEEEEEecCCcEEeEecCCCc
Confidence            4799999999999999999887776 655        45577777776533        599999999999999975443


Q ss_pred             ccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (430)
Q Consensus       145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  224 (430)
                              .+.++. .|...+.++...  ..++++|+.|.+|++|+++++..+..+.+|.         .+|.++.+   
T Consensus       283 --------C~~~l~-gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~---------~~V~~v~~---  339 (537)
T KOG0274|consen  283 --------CTHSLQ-GHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHT---------GPVNCVQL---  339 (537)
T ss_pred             --------EEEEec-CCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecccc---------ccEEEEEe---
Confidence                    566665 677888887764  5678889999999999999999998888765         88999999   


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCC
Q 014154          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGS  303 (430)
Q Consensus       225 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~  303 (430)
                       ++.++++|+.|++|++||+.+++ ++..+.+|...|.++.+.+. ..+++|+.|++|++||+++. +++..+.+| .+-
T Consensus       340 -~~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h-~~~  415 (537)
T KOG0274|consen  340 -DEPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH-TSL  415 (537)
T ss_pred             -cCCEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC-ccc
Confidence             58899999999999999999865 59999999999999988764 79999999999999999999 999999998 888


Q ss_pred             eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154          304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       304 v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~  378 (430)
                      +..+.+  .+++|++++.|+.|++||..+++++.+  +.++....+..+++. +..+++++.|+.+.+|+.....
T Consensus       416 v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~--~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~  485 (537)
T KOG0274|consen  416 VSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRT--LEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGT  485 (537)
T ss_pred             cccccc--ccceeEeccccccEEEeecccCceeee--eccCCcccEEEeecC-cceEEEEecCCeeEEEecccCc
Confidence            876665  778999999999999999999999998  445223446777776 5556999999999999887654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1e-27  Score=208.66  Aligned_cols=288  Identities=14%  Similarity=0.070  Sum_probs=213.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec-
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-   93 (430)
                      .|+++|+.|.+|++||+.+-...+..+..-.....+.+..+.+    +|.|..|++.+.....+|+|-.-.......++ 
T Consensus       180 aR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y----s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGD  255 (641)
T KOG0772|consen  180 ARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY----SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGD  255 (641)
T ss_pred             ceeeeccccceEEEEecccccccchhhhccCcccccccceeee----cCCCCeEEEEecCcceeEEccCCceeeeeeccc
Confidence            8999999999999999998544444322222223344444444    56777888888889999999643333333333 


Q ss_pred             --cCCCCC-CCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC----CCceE
Q 014154           94 --AGDSGA-QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIA  166 (430)
Q Consensus        94 --~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~----~~~i~  166 (430)
                        +..... -+|...+.+..|.+...       +.+++++.||++++|++.....       ...++....    .-.++
T Consensus       256 QYI~Dm~nTKGHia~lt~g~whP~~k-------~~FlT~s~DgtlRiWdv~~~k~-------q~qVik~k~~~g~Rv~~t  321 (641)
T KOG0772|consen  256 QYIRDMYNTKGHIAELTCGCWHPDNK-------EEFLTCSYDGTLRIWDVNNTKS-------QLQVIKTKPAGGKRVPVT  321 (641)
T ss_pred             hhhhhhhccCCceeeeeccccccCcc-------cceEEecCCCcEEEEecCCchh-------heeEEeeccCCCcccCce
Confidence              111111 14455666666666665       7999999999999999876543       445554332    23578


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      .++|++++++||+|+.||.|.+|+......   ...-..|..       ...|+|+.|  +++|++|++-+.|+++++||
T Consensus       322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~-------g~~Itsi~F--S~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP-------GQDITSISF--SYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC-------CCceeEEEe--ccccchhhhccCCCceeeee
Confidence            999999999999999999999999743211   111122321       146999999  89999999999999999999


Q ss_pred             CCCCCcceEEEeec--CCCeEEEEecCCCCEEEEEeC------CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCe
Q 014154          244 TSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (430)
Q Consensus       244 ~~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  315 (430)
                      ++..++++....+-  ..+-+.++|||+.++|++|+.      .|.+.+||..+...++++.-. ...|..+.|||.-+.
T Consensus       393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQ  471 (641)
T KOG0772|consen  393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQ  471 (641)
T ss_pred             ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhh
Confidence            99988887776653  235678899999999999863      478999999999999988876 788999999999888


Q ss_pred             EEEEeCCCcEEEEEC
Q 014154          316 IASCGLDSYLRFWDI  330 (430)
Q Consensus       316 l~s~~~dg~i~iwd~  330 (430)
                      |+.|+.||.++||--
T Consensus       472 i~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  472 IFAGSGDGTAHVYYD  486 (641)
T ss_pred             eeeecCCCceEEEEC
Confidence            999999999998743

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-27  Score=194.89  Aligned_cols=317  Identities=16%  Similarity=0.163  Sum_probs=247.1

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      |+.++++.-.+++++           ..++..|.+|.+.+.-++..-    ..+.+.+++.|.+.+||.+++|.++..+.
T Consensus       123 ~tsrivssFk~~t~~-----------~~lvre~~GHkDGiW~Vaa~~----tqpi~gtASADhTA~iWs~Esg~CL~~Y~  187 (481)
T KOG0300|consen  123 PTSRIVSSFKDGTVK-----------FRLVRELEGHKDGIWHVAADS----TQPICGTASADHTARIWSLESGACLATYT  187 (481)
T ss_pred             CcchheeeecCCcee-----------Eeehhhhcccccceeeehhhc----CCcceeecccccceeEEeeccccceeeec
Confidence            445566666666533           156677899999866555433    23478999999999999999999999987


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc-------------------------c-
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-------------------------S-  146 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-------------------------~-  146 (430)
                      +|        .+.+.++.+.+...        .+++++.|++..||..+..-.                         . 
T Consensus       188 GH--------~GSVNsikfh~s~~--------L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d  251 (481)
T KOG0300|consen  188 GH--------TGSVNSIKFHNSGL--------LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD  251 (481)
T ss_pred             cc--------ccceeeEEeccccc--------eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence            74        45788888877543        889999999999998432111                         0 


Q ss_pred             -c-cCCCcceEEee---ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEE
Q 014154          147 -A-ESSCSTVKSWN---VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (430)
Q Consensus       147 -~-~~~~~~i~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (430)
                       + .++..+|++--   ..|...|.+..|-..++.+++++.|.+..+||+++++.+..+.+|.         ...+.+.-
T Consensus       252 ~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd---------~ELtHcst  322 (481)
T KOG0300|consen  252 SSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHD---------SELTHCST  322 (481)
T ss_pred             cccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcc---------hhcccccc
Confidence             0 11112333221   1456778888898899999999999999999999999999988876         44566666


Q ss_pred             eecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe-EEeeeeCCC
Q 014154          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKC  300 (430)
Q Consensus       222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~  300 (430)
                        +|..+++++.+.|.+.++||++..-..+..|++|...|+++.|..+. .+++|+.|.+|++||+++.+ ++.++..  
T Consensus       323 --HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt--  397 (481)
T KOG0300|consen  323 --HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT--  397 (481)
T ss_pred             --CCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec--
Confidence              78899999999999999999997666688999999999999998665 78899999999999999765 5777776  


Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE---eeccccceEEeeeccccccc---cccCCCCceEecCC
Q 014154          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF---LKQHLNEVVFDSAFADKEVA---NAAADAPMLEIQNG  374 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~v~~~~~s~~g~~---~~~~~d~~i~~~~~  374 (430)
                      .++++.++.+..+++++.--.+..|++||++. ..+..++   -.+| ...|.+++|..+...   ++++.|..+.-|..
T Consensus       398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgH-rRMV~c~AW~eehp~cnLftcGFDR~v~gW~i  475 (481)
T KOG0300|consen  398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGH-RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI  475 (481)
T ss_pred             CCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCccccccc-ceeeeeeeccccCcccccccccccceeeeeEe
Confidence            67899999998888999998899999999974 4444332   3466 677899999877654   88999999999987


Q ss_pred             CC
Q 014154          375 ND  376 (430)
Q Consensus       375 ~~  376 (430)
                      +.
T Consensus       476 n~  477 (481)
T KOG0300|consen  476 NT  477 (481)
T ss_pred             cc
Confidence            65

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.5e-27  Score=225.24  Aligned_cols=295  Identities=14%  Similarity=0.110  Sum_probs=229.1

Q ss_pred             cceeeec--CCCceEEEEccCCC-------CCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC
Q 014154           15 LRALTFD--SLGLIKVIEARGEH-------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (430)
Q Consensus        15 ~~l~t~~--~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~   85 (430)
                      .+++||+  .||.++||+.+.--       ..+++.+.+...|.+.+.|+.|    +|||+|||+|+.|+.|.||.... 
T Consensus        26 ~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~----S~dG~~lAsGSDD~~v~iW~~~~-  100 (942)
T KOG0973|consen   26 VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF----SPDGSYLASGSDDRLVMIWERAE-  100 (942)
T ss_pred             eeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE----CCCCCeEeeccCcceEEEeeecc-
Confidence            6889999  99999999875410       1246677777889999776666    66888999999999999998753 


Q ss_pred             cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (430)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i  165 (430)
                      ......-                                  =++.....+.-|.             .+.++. .|...|
T Consensus       101 ~~~~~~f----------------------------------gs~g~~~~vE~wk-------------~~~~l~-~H~~DV  132 (942)
T KOG0973|consen  101 IGSGTVF----------------------------------GSTGGAKNVESWK-------------VVSILR-GHDSDV  132 (942)
T ss_pred             cCCcccc----------------------------------cccccccccceee-------------EEEEEe-cCCCcc
Confidence            1111000                                  0000111122222             233333 588999


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  245 (430)
                      ..++|+|++.+|++++.|++|.+||..+.+.+..+..|.         ..|..+.|  .|-|++|++-+.|++|++|.+.
T Consensus       133 ~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~---------s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~  201 (942)
T KOG0973|consen  133 LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ---------SLVKGVSW--DPIGKYFASQSDDRTLKVWRTS  201 (942)
T ss_pred             ceeccCCCccEEEEecccceEEEEccccceeeeeeeccc---------ccccceEE--CCccCeeeeecCCceEEEEEcc
Confidence            999999999999999999999999999999999999987         77999999  8999999999999999999977


Q ss_pred             CCCcceEEEeec------CCCeEEEEecCCCCEEEEEeC----CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC---
Q 014154          246 AQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT---  312 (430)
Q Consensus       246 ~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~---  312 (430)
                      +.. ..+.+..+      .....-+.|||||++|++...    -..+.|.+-.+.+.-..|.|| .+++.++.|+|.   
T Consensus       202 dw~-i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~lfe  279 (942)
T KOG0973|consen  202 DWG-IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKLFE  279 (942)
T ss_pred             cce-eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHHhc
Confidence            633 34454443      235678999999999998742    346889888888888899999 889999999972   


Q ss_pred             --CC------------eEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          313 --LP------------IIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       313 --~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                        ..            .+|+|+.|++|.||.....+++..+  ..-....|.+++|+|||.. ++++.||+|.++.+.+.
T Consensus       280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             cccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh--hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence              11            6899999999999999888887663  3334566899999999998 88999999999988653

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1.2e-26  Score=216.05  Aligned_cols=204  Identities=11%  Similarity=0.129  Sum_probs=166.1

Q ss_pred             cCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe-------eeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEE
Q 014154          160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKF  230 (430)
Q Consensus       160 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l  230 (430)
                      .|.+.|.+++|+| ++++|++|+.|++|++||+.++.       .+..+..|.         ..|.+++|  +|++ ++|
T Consensus        73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~---------~~V~~l~f--~P~~~~iL  141 (493)
T PTZ00421         73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT---------KKVGIVSF--HPSAMNVL  141 (493)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCC---------CcEEEEEe--CcCCCCEE
Confidence            6789999999999 88999999999999999997642       234444443         77999999  6764 699


Q ss_pred             EEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154          231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (430)
Q Consensus       231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~  310 (430)
                      ++++.|+.|+|||+.++. .+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|....+..+.|+
T Consensus       142 aSgs~DgtVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~  220 (493)
T PTZ00421        142 ASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA  220 (493)
T ss_pred             EEEeCCCEEEEEECCCCe-EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence            999999999999999865 4778888999999999999999999999999999999999999999988833345678899


Q ss_pred             CCCCeEEEEe----CCCcEEEEECCCCc-eeeEEEeeccccceEEeeeccccccc-cccC-CCCceEecCCCCC
Q 014154          311 PTLPIIASCG----LDSYLRFWDIKTRQ-LLSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAPMLEIQNGNDT  377 (430)
Q Consensus       311 ~~~~~l~s~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~-~d~~i~~~~~~~~  377 (430)
                      +++..+++++    .|+.|++||+++.. ++..  ...+....+....|++++.+ ++++ .|+.|++|+....
T Consensus       221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~--~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        221 KRKDLIITLGCSKSQQRQIMLWDTRKMASPYST--VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE--eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            9888877765    47899999998754 3333  22233345567789999988 5555 6999999998753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.8e-26  Score=183.42  Aligned_cols=264  Identities=14%  Similarity=0.116  Sum_probs=210.0

Q ss_pred             CCCCcceeeecCCCceEEEEccCCCCCcceeee--ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154           11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVE--RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus        11 ~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      .|..-+|++|+.|+++++|++...     +++.  .+.+|.+.+--+++..   +..+++++++.|.+|++||+..++++
T Consensus        29 n~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~---~~~d~~atas~dk~ir~wd~r~~k~~  100 (313)
T KOG1407|consen   29 NCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDP---KHPDLFATASGDKTIRIWDIRSGKCT  100 (313)
T ss_pred             cccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCC---CCCcceEEecCCceEEEEEeccCcEE
Confidence            355678999999999999999986     3443  3456777654444333   34468999999999999999999988


Q ss_pred             ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE
Q 014154           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (430)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~  168 (430)
                      ..+..-        ...+ .+.|++..        +.++++..+..+...+.....        .+..+  .....+..+
T Consensus       101 ~~i~~~--------~eni-~i~wsp~g--------~~~~~~~kdD~it~id~r~~~--------~~~~~--~~~~e~ne~  153 (313)
T KOG1407|consen  101 ARIETK--------GENI-NITWSPDG--------EYIAVGNKDDRITFIDARTYK--------IVNEE--QFKFEVNEI  153 (313)
T ss_pred             EEeecc--------Ccce-EEEEcCCC--------CEEEEecCcccEEEEEecccc--------eeehh--cccceeeee
Confidence            776541        1233 25555544        488888888888887765332        11111  223567788


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154          169 KVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       169 ~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  248 (430)
                      +|+.++++++.....|.|.|......+++..++.|.         ....|+.|  +|+|++||+|+.|..+.+||+...-
T Consensus       154 ~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~---------snCicI~f--~p~GryfA~GsADAlvSLWD~~ELi  222 (313)
T KOG1407|consen  154 SWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP---------SNCICIEF--DPDGRYFATGSADALVSLWDVDELI  222 (313)
T ss_pred             eecCCCCEEEEecCCceEEEEeccccccccccccCC---------cceEEEEE--CCCCceEeeccccceeeccChhHhh
Confidence            898777777777777999999999989999988876         55778888  9999999999999999999999754


Q ss_pred             cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                       +++.+..+.-+|..+.||.+|++|++|++|..|-|=++.+|..+..++.  .++...++|+|...+||-++.|.
T Consensus       223 -C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~--~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  223 -CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC--EGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             -hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec--cCCceeEEecCCCceeeEEecCC
Confidence             4788888999999999999999999999999999999999999988875  78999999999999999887663

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=3.7e-27  Score=205.18  Aligned_cols=306  Identities=13%  Similarity=0.080  Sum_probs=209.4

Q ss_pred             cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-ccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      +.+|+..  +.++.+  .|.|..|++|+.|..|++||+..-. ....|+.+.+    .....|.++.+....        
T Consensus       163 l~hgtk~--Vsal~~--Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P----~E~h~i~sl~ys~Tg--------  226 (641)
T KOG0772|consen  163 LKHGTKI--VSALAV--DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP----CETHQINSLQYSVTG--------  226 (641)
T ss_pred             ccCCceE--EEEeee--cCCCceeeeccccceEEEEecccccccchhhhccCc----ccccccceeeecCCC--------
Confidence            4445555  555656  7789999999999999999986322 1222332211    122355555554433        


Q ss_pred             ceEEEEccCCeeEEEEeeecCc-cccCCCcceEEee--ecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee-eE
Q 014154          124 RTLLTCTTKGKASMRSIEVTKV-SAESSCSTVKSWN--VCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK-IW  198 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~i~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~-~~  198 (430)
                      +.+++.+......|++-+-... ...-.|..|+-..  ..|-..++|.+|+| +.+.+++++.||++++||++..+. ..
T Consensus       227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q  306 (641)
T KOG0772|consen  227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ  306 (641)
T ss_pred             CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence            4677666666677766322111 0001122222111  12446788999999 457889999999999999976443 22


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-cc-eEEEeecCC--CeEEEEecCCCCEEE
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RP-VMSFDFRET--PIKAVAEEPDSFNIY  274 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~-~~~~~~~~~--~i~~~~~sp~~~~l~  274 (430)
                      .++.....    .....++.++|  ++++.+||+|+.||+|.+|+..... .+ ...-..|..  .|+||+||++|++|+
T Consensus       307 Vik~k~~~----g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  307 VIKTKPAG----GKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL  380 (641)
T ss_pred             EEeeccCC----CcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh
Confidence            22221111    11246889999  9999999999999999999986432 12 334456765  899999999999999


Q ss_pred             EEeCCCcEEEEEccCCe-EEeeeeCCC-CCCeEEEEecCCCCeEEEEe------CCCcEEEEECCCCceeeEEEeecccc
Q 014154          275 IGNGSGDLASVDIRTGK-LLGCFIGKC-SGSIRSIARHPTLPIIASCG------LDSYLRFWDIKTRQLLSAVFLKQHLN  346 (430)
Q Consensus       275 ~~~~d~~i~iwd~~~~~-~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~~  346 (430)
                      +-+.|+++++||+++.+ ++.+..+-. ..+-+.++|||+.++|++|.      ..|.+.+||..+.+.++.+.+.   .
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---~  457 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---T  457 (641)
T ss_pred             hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC---C
Confidence            99999999999999764 455544421 23457789999999999985      3578999999999999986543   4


Q ss_pred             ceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          347 EVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       347 ~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      ..|..+.|+|.=.. ++++.||.+++|-.+
T Consensus       458 aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp  487 (641)
T KOG0772|consen  458 ASVVRCLWHPKLNQIFAGSGDGTAHVYYDP  487 (641)
T ss_pred             ceEEEEeecchhhheeeecCCCceEEEECc
Confidence            45789999998655 888899999987443

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=1e-25  Score=209.73  Aligned_cols=281  Identities=11%  Similarity=0.028  Sum_probs=200.1

Q ss_pred             cceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec-----cCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154           52 NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-----AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (430)
Q Consensus        52 ~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  126 (430)
                      +.+...++    ++..+++++.+.....|+...+..+..+..     .....+.+|.+.+.++.|.+...       ..+
T Consensus        23 i~~~~~~~----d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~-------~~L   91 (493)
T PTZ00421         23 VTPSTALW----DCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP-------QKL   91 (493)
T ss_pred             cccccccC----CCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC-------CEE
Confidence            34444444    433467777777777787644332211111     01112346778898888876443       589


Q ss_pred             EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCC
Q 014154          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK  205 (430)
Q Consensus       127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~  205 (430)
                      ++++.|+.+.+|++..... .......+..+. .|...|.+++|+|++ ++|++++.|++|++||+++++.+..+..|. 
T Consensus        92 aSgS~DgtIkIWdi~~~~~-~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~-  168 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGL-TQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHS-  168 (493)
T ss_pred             EEEeCCCEEEEEecCCCcc-ccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCC-
Confidence            9999999999999864321 001112344443 578899999999975 799999999999999999998888777654 


Q ss_pred             CCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC-eEEEEecCCCCEEEEEe----CCC
Q 014154          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPDSFNIYIGN----GSG  280 (430)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~sp~~~~l~~~~----~d~  280 (430)
                              ..|.+++|  +|++.+|++++.|+.|++||++++. .+..+.+|... +..+.|.+++..|++++    .|+
T Consensus       169 --------~~V~sla~--spdG~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr  237 (493)
T PTZ00421        169 --------DQITSLEW--NLDGSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQR  237 (493)
T ss_pred             --------CceEEEEE--ECCCCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCC
Confidence                    67999999  8899999999999999999999866 47778888654 45677888887877654    478


Q ss_pred             cEEEEEccCCe-EEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154          281 DLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       281 ~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      .|++||+++.. ++.....+....+....|++++.+|++++ .|+.|++||+.+++++....  ......+..++|.|.-
T Consensus       238 ~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~--~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        238 QIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS--YSSVEPHKGLCMMPKW  315 (493)
T ss_pred             eEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee--ccCCCCCcceEecccc
Confidence            99999998765 34334333244566778999999998887 59999999999998776532  2223334666666643


Q ss_pred             c
Q 014154          359 V  359 (430)
Q Consensus       359 ~  359 (430)
                      .
T Consensus       316 ~  316 (493)
T PTZ00421        316 S  316 (493)
T ss_pred             c
Confidence            3

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=5.1e-27  Score=192.09  Aligned_cols=291  Identities=15%  Similarity=0.160  Sum_probs=211.4

Q ss_pred             cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC----cccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      +..|..++.+  ..|  +|||.++|+|+.|..|+|.|++.-    ++.....+    .               ...    
T Consensus       108 lt~HK~~cR~--aaf--s~DG~lvATGsaD~SIKildvermlaks~~~em~~~----~---------------~qa----  160 (430)
T KOG0640|consen  108 LTSHKSPCRA--AAF--SPDGSLVATGSADASIKILDVERMLAKSKPKEMISG----D---------------TQA----  160 (430)
T ss_pred             Eeecccceee--eee--CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC----C---------------ccc----
Confidence            3457777444  444  778889999999999999998621    11111111    0               000    


Q ss_pred             ccCceEEEEccCCeeEEEEeeecCc----cccCCCcceEEeeecC------------CCceEEEEEcCCCCEEEEEeCCC
Q 014154          121 SRSRTLLTCTTKGKASMRSIEVTKV----SAESSCSTVKSWNVCA------------SGTIAFSKVDISEKFSLFGGKGV  184 (430)
Q Consensus       121 ~~~~~~~~~~~~g~~~v~~~~~~~~----~~~~~~~~i~~~~~~~------------~~~i~~~~~~~~~~~l~~~~~d~  184 (430)
                        .--++-...||...|.++.|.|.    ++++.|+++++|+...            ...|.++.|+|.|.+|++|....
T Consensus       161 --~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp  238 (430)
T KOG0640|consen  161 --RHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHP  238 (430)
T ss_pred             --CCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCC
Confidence              00233333344444444444443    4444445555554432            35799999999999999999999


Q ss_pred             eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE-eecC-CCeE
Q 014154          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRE-TPIK  262 (430)
Q Consensus       185 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~-~~i~  262 (430)
                      ++++||+++.++........      .|...|+++.+  ++.+++.++++.||.|++||--.+++ +.++ +.|. ..|.
T Consensus       239 ~~rlYdv~T~QcfvsanPd~------qht~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rC-v~t~~~AH~gsevc  309 (430)
T KOG0640|consen  239 TLRLYDVNTYQCFVSANPDD------QHTGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRC-VRTIGNAHGGSEVC  309 (430)
T ss_pred             ceeEEeccceeEeeecCccc------ccccceeEEEe--cCCccEEEEeccCCcEEeeccccHHH-HHHHHhhcCCceee
Confidence            99999999988876654322      24478999999  89999999999999999999888665 5544 3453 5799


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceee
Q 014154          263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       263 ~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~  337 (430)
                      +..|..++++|++.+.|..+++|.+.+++++.++.+.-    ..--+...|+....+++.-. ..+.+.-||.+++..+.
T Consensus       310 Sa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~  389 (430)
T KOG0640|consen  310 SAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA  389 (430)
T ss_pred             eEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh
Confidence            99999999999999999999999999999999998640    11124456888888877664 34679999999988777


Q ss_pred             EEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       338 ~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      .+ .-+| .+.+..+.-||.+.. +++++|-..++|-..
T Consensus       390 l~-slgH-n~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  390 LL-SLGH-NGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hc-ccCC-CCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            64 3467 556789999999998 999999999999654

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=5.4e-27  Score=188.08  Aligned_cols=276  Identities=14%  Similarity=0.155  Sum_probs=207.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|++++.|.++.||-..+|     +.+-++.+|.+.|.++.+.++    .++|++|+.|.++++||+++|+++..++.-
T Consensus        23 DLlFscaKD~~~~vw~s~nG-----erlGty~GHtGavW~~Did~~----s~~liTGSAD~t~kLWDv~tGk~la~~k~~   93 (327)
T KOG0643|consen   23 DLLFSCAKDSTPTVWYSLNG-----ERLGTYDGHTGAVWCCDIDWD----SKHLITGSADQTAKLWDVETGKQLATWKTN   93 (327)
T ss_pred             cEEEEecCCCCceEEEecCC-----ceeeeecCCCceEEEEEecCC----cceeeeccccceeEEEEcCCCcEEEEeecC
Confidence            57899999999999988777     899999999999988888773    358999999999999999999999888751


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc-----CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~  169 (430)
                               .++..+.+....        ..++.++.     .+.+.++++...+.-..+.+...++-  .+...++.+-
T Consensus        94 ---------~~Vk~~~F~~~g--------n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~--t~~skit~a~  154 (327)
T KOG0643|consen   94 ---------SPVKRVDFSFGG--------NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP--TPDSKITSAL  154 (327)
T ss_pred             ---------CeeEEEeeccCC--------cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec--CCccceeeee
Confidence                     123333333221        23333332     33577777765442111222233333  3347899999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  248 (430)
                      |.|.+++|++|..||.|..||++++..+.. ...|.         ..|+.+.+  +++..++++++.|.+-++||..+..
T Consensus       155 Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~---------~~Ind~q~--s~d~T~FiT~s~Dttakl~D~~tl~  223 (327)
T KOG0643|consen  155 WGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS---------SKINDLQF--SRDRTYFITGSKDTTAKLVDVRTLE  223 (327)
T ss_pred             ecccCCEEEEecCCCcEEEEEcccCceeeechhhhc---------cccccccc--cCCcceEEecccCccceeeecccee
Confidence            999999999999999999999999865433 33433         67999999  8999999999999999999999854


Q ss_pred             cceEEEeecCCCeEEEEecCCCCEEEEEeCCCc--------------EEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC
Q 014154          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD--------------LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~--------------i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~  314 (430)
                       .+.++.. ..+|++.+++|....++.|+....              .++|++-..+.+..+++| -++|++++|||+|.
T Consensus       224 -v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH-FGPINsvAfhPdGk  300 (327)
T KOG0643|consen  224 -VLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH-FGPINSVAFHPDGK  300 (327)
T ss_pred             -eEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc-ccCcceeEECCCCc
Confidence             3555543 579999999998888887764322              122222223456677888 89999999999999


Q ss_pred             eEEEEeCCCcEEEEECCC
Q 014154          315 IIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       315 ~l~s~~~dg~i~iwd~~~  332 (430)
                      ..++|++||.||+.....
T Consensus       301 sYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  301 SYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ccccCCCCceEEEEEecc
Confidence            999999999999986643

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.2e-26  Score=199.30  Aligned_cols=271  Identities=11%  Similarity=0.117  Sum_probs=212.9

Q ss_pred             CCCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154            9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus         9 ~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      +|..|..-++|++  -.+.||+..+.     ..+..+.-....++  +.+|  ..||++||+|+..|.|+|+|+.+...+
T Consensus        35 sp~~P~d~aVt~S--~rvqly~~~~~-----~~~k~~srFk~~v~--s~~f--R~DG~LlaaGD~sG~V~vfD~k~r~iL  103 (487)
T KOG0310|consen   35 SPKHPYDFAVTSS--VRVQLYSSVTR-----SVRKTFSRFKDVVY--SVDF--RSDGRLLAAGDESGHVKVFDMKSRVIL  103 (487)
T ss_pred             CCCCCCceEEecc--cEEEEEecchh-----hhhhhHHhhcccee--EEEe--ecCCeEEEccCCcCcEEEeccccHHHH
Confidence            4556666677766  37889998874     44444544455544  4444  668899999999999999997665566


Q ss_pred             ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE
Q 014154           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (430)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~  168 (430)
                      ..+..|        ..++..+.+.+...       ..+++|+.|..+.+|++...         .+...-..|...|.|.
T Consensus       104 R~~~ah--------~apv~~~~f~~~d~-------t~l~s~sDd~v~k~~d~s~a---------~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen  104 RQLYAH--------QAPVHVTKFSPQDN-------TMLVSGSDDKVVKYWDLSTA---------YVQAELSGHTDYVRCG  159 (487)
T ss_pred             HHHhhc--------cCceeEEEecccCC-------eEEEecCCCceEEEEEcCCc---------EEEEEecCCcceeEee
Confidence            666654        33555455544444       57888999999999997643         3444445788999999


Q ss_pred             EEcC-CCCEEEEEeCCCeEEEEECCCC-eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154          169 KVDI-SEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       169 ~~~~-~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  246 (430)
                      +++| ++..+++|+.||.|++||++.. ..+.++...          .+|..+.|  -|.|.+|++++ ...|++||+.+
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg----------~pVe~vl~--lpsgs~iasAg-Gn~vkVWDl~~  226 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHG----------CPVESVLA--LPSGSLIASAG-GNSVKVWDLTT  226 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCCceeEEecCC----------CceeeEEE--cCCCCEEEEcC-CCeEEEEEecC
Confidence            9999 4568899999999999999875 555555432          67889999  57888999876 55899999998


Q ss_pred             CCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEE
Q 014154          247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (430)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  326 (430)
                      +.+.+..+..|...|+|+.+..++..|++|+-|+.|++||+.+.+.++.+.-  .++|.+++.+|+++.++.|..||.+.
T Consensus       227 G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--~~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  227 GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--PGPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             CceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec--ccceeeEEecCCCceEEEecccceee
Confidence            7766666666999999999999999999999999999999999999988886  68999999999999999999999887


Q ss_pred             EEE
Q 014154          327 FWD  329 (430)
Q Consensus       327 iwd  329 (430)
                      +=+
T Consensus       305 ~rr  307 (487)
T KOG0310|consen  305 IRR  307 (487)
T ss_pred             eeh
Confidence            653

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=1.3e-25  Score=210.04  Aligned_cols=202  Identities=10%  Similarity=0.109  Sum_probs=158.7

Q ss_pred             cCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCee--------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCE-
Q 014154          160 CASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEK--------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-  229 (430)
Q Consensus       160 ~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  229 (430)
                      .|...|.+++|+|+ +++|++|+.|++|++||+.++..        +..+..|         ...|.+++|  +|++.. 
T Consensus        72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH---------~~~V~sVaf--~P~g~~i  140 (568)
T PTZ00420         72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH---------KKKISIIDW--NPMNYYI  140 (568)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC---------CCcEEEEEE--CCCCCeE
Confidence            57789999999996 78999999999999999976421        1223333         377999999  787765 


Q ss_pred             EEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEE---
Q 014154          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS---  306 (430)
Q Consensus       230 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~---  306 (430)
                      |++++.|+.|++||++++.. +..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+.++.+| .+.+..   
T Consensus       141 LaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH-~g~~~s~~v  217 (568)
T PTZ00420        141 MCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH-DGGKNTKNI  217 (568)
T ss_pred             EEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc-cCCceeEEE
Confidence            57899999999999998664 45554 5578999999999999999999999999999999999999998 554432   


Q ss_pred             --EEecCCCCeEEEEeCCC----cEEEEECCC-CceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          307 --IARHPTLPIIASCGLDS----YLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       307 --i~~~~~~~~l~s~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                        ..|++++.+|++++.|+    .|+|||+++ .+++..+.+..+ ...+......++|.+ ++|..|+.|++|+...
T Consensus       218 ~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        218 WIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             EeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence              33568989999988774    799999995 667766544444 233333344556777 8899999999999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=2.2e-26  Score=197.80  Aligned_cols=254  Identities=17%  Similarity=0.181  Sum_probs=192.5

Q ss_pred             CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc---cccCCCcceEEeeecCCCceEEEEEcC-CCCEEE
Q 014154          103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---SAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSL  178 (430)
Q Consensus       103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~  178 (430)
                      .+.+..++..+...       ..+++.+..+.+.||+....+.   .++...-.+++.  .|.+.-..++|++ ..-.|+
T Consensus       124 ~gEVnRaRymPQnp-------~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~--gH~~eg~glsWn~~~~g~Ll  194 (422)
T KOG0264|consen  124 DGEVNRARYMPQNP-------NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK--GHEKEGYGLSWNRQQEGTLL  194 (422)
T ss_pred             CccchhhhhCCCCC-------cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE--eecccccccccccccceeEe
Confidence            34444445555443       5667778889999999887765   222222223332  4555567799988 456889


Q ss_pred             EEeCCCeEEEEECCCCee-------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC-CCcc
Q 014154          179 FGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRP  250 (430)
Q Consensus       179 ~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~  250 (430)
                      +++.|++|++||+.....       ...+..         |...|..++|+ .-+..+|++++.|+.+.|||+++ ..++
T Consensus       195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~---------h~~~VeDV~~h-~~h~~lF~sv~dd~~L~iwD~R~~~~~~  264 (422)
T KOG0264|consen  195 SGSDDHTICLWDINAESKEDKVVDPKTIFSG---------HEDVVEDVAWH-PLHEDLFGSVGDDGKLMIWDTRSNTSKP  264 (422)
T ss_pred             eccCCCcEEEEeccccccCCccccceEEeec---------CCcceehhhcc-ccchhhheeecCCCeEEEEEcCCCCCCC
Confidence            999999999999975332       222333         34779999996 34567899999999999999995 3456


Q ss_pred             eEEEeecCCCeEEEEecCC-CCEEEEEeCCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEE
Q 014154          251 VMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRF  327 (430)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~i  327 (430)
                      .....+|.+.|.|++|+|- +..||+|+.|++|.+||+|+.. ++..+.+| ...|.++.|+|.. ..|++++.|+.+.|
T Consensus       265 ~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~etvLASSg~D~rl~v  343 (422)
T KOG0264|consen  265 SHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNETVLASSGTDRRLNV  343 (422)
T ss_pred             cccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCCceeEecccCCcEEE
Confidence            7788899999999999995 5778899999999999999754 58889998 9999999999965 68899999999999


Q ss_pred             EECCCCcee------------eEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154          328 WDIKTRQLL------------SAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       328 wd~~~~~~~------------~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~  377 (430)
                      ||+..-...            -.|...|| ...|....|+|+...  ++++.|+.++||.....
T Consensus       344 WDls~ig~eq~~eda~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~  406 (422)
T KOG0264|consen  344 WDLSRIGEEQSPEDAEDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN  406 (422)
T ss_pred             EeccccccccChhhhccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence            999642211            11335677 555799999999987  88999999999998743

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=1.4e-25  Score=191.58  Aligned_cols=270  Identities=11%  Similarity=0.148  Sum_probs=219.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..++||+.|..+.++|...+     +++..|.+|...  +..+-+  +|+...+++++.|-.|+||..........    
T Consensus       232 ~~ilTGG~d~~av~~d~~s~-----q~l~~~~Gh~kk--i~~v~~--~~~~~~v~~aSad~~i~vws~~~~s~~~~----  298 (506)
T KOG0289|consen  232 SKILTGGEDKTAVLFDKPSN-----QILATLKGHTKK--ITSVKF--HKDLDTVITASADEIIRVWSVPLSSEPTS----  298 (506)
T ss_pred             CcceecCCCCceEEEecchh-----hhhhhccCcceE--EEEEEe--ccchhheeecCCcceEEeeccccccCccc----
Confidence            67899999999999999998     899999999888  555555  77777899999999999999866553333    


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee-cCCCceEEEEEcCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDIS  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~  173 (430)
                          ..+++.+++.+...+...        ++++++.++...+.++....        .+..... ...-.+++.+|+|+
T Consensus       299 ----~~~h~~~V~~ls~h~tge--------YllsAs~d~~w~Fsd~~~g~--------~lt~vs~~~s~v~~ts~~fHpD  358 (506)
T KOG0289|consen  299 ----SRPHEEPVTGLSLHPTGE--------YLLSASNDGTWAFSDISSGS--------QLTVVSDETSDVEYTSAAFHPD  358 (506)
T ss_pred             ----cccccccceeeeeccCCc--------EEEEecCCceEEEEEccCCc--------EEEEEeeccccceeEEeeEcCC
Confidence                235667888777766654        99999999998888876443        2332222 23356899999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      |..|.+|..|+.|++||+.....+..+.+|.         +.|..++|  +.+|.+|++++.|+.|++||++..+. ..+
T Consensus       359 gLifgtgt~d~~vkiwdlks~~~~a~Fpght---------~~vk~i~F--sENGY~Lat~add~~V~lwDLRKl~n-~kt  426 (506)
T KOG0289|consen  359 GLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT---------GPVKAISF--SENGYWLATAADDGSVKLWDLRKLKN-FKT  426 (506)
T ss_pred             ceEEeccCCCceEEEEEcCCccccccCCCCC---------CceeEEEe--ccCceEEEEEecCCeEEEEEehhhcc-cce
Confidence            9999999999999999999988888887765         88999999  89999999999999999999997553 555


Q ss_pred             Eeec-CCCeEEEEecCCCCEEEEEeCCCcEEEEEcc--CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          254 FDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR--TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       254 ~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      +... ...+.++.|.+.|.+|++++.|=.|++++-.  +.+++..+..| .+..+++.|....++++++|.|..++++.+
T Consensus       427 ~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  427 IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc-ccccceeeecccceEEeeccchhheEEeec
Confidence            5443 2479999999999999999888777777643  45667777777 778899999999999999999999988764

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.2e-25  Score=191.67  Aligned_cols=300  Identities=18%  Similarity=0.134  Sum_probs=228.8

Q ss_pred             eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce-eec-------cCCCCCC--CCCCceEEEEE
Q 014154           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA-ISN-------AGDSGAQ--PEDDGIVGLHL  111 (430)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~-------~~~~~~~--~~~~~i~~~~~  111 (430)
                      ...+..|..++.++++    +|++.++++++.+|+|.=|++.+++.... ++.       ..+....  .|...+.++.+
T Consensus       135 ~~~~~~H~~s~~~val----s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av  210 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVAL----SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV  210 (479)
T ss_pred             ceeeccccCcceEEEe----eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE
Confidence            3456678888666665    55677999999999999999998875422 111       1122222  45566777777


Q ss_pred             eecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 014154          112 FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL  191 (430)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~  191 (430)
                      .+...        +++++..+..+.||+.....        .++.|. .|.+.|.+++|-.....|++++.|..|++|++
T Consensus       211 S~Dgk--------ylatgg~d~~v~Iw~~~t~e--------hv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~  273 (479)
T KOG0299|consen  211 SSDGK--------YLATGGRDRHVQIWDCDTLE--------HVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSI  273 (479)
T ss_pred             cCCCc--------EEEecCCCceEEEecCcccc--------hhhccc-ccccceeeeeeecCccceeeeecCCceEEEeh
Confidence            66554        89999999999999987554        666665 78899999999999999999999999999999


Q ss_pred             CCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC
Q 014154          192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF  271 (430)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~  271 (430)
                      +....+.++.+|+         +.|..+..  ...++.+-+|+.|+++++|++..  .....+.+|.+.+.|++|-.+ .
T Consensus       274 ~~~s~vetlyGHq---------d~v~~Ida--L~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In~-~  339 (479)
T KOG0299|consen  274 DQLSYVETLYGHQ---------DGVLGIDA--LSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIND-E  339 (479)
T ss_pred             hHhHHHHHHhCCc---------cceeeech--hcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEecc-c
Confidence            9888888888876         66777776  44566777777999999999965  336788889999999999744 5


Q ss_pred             EEEEEeCCCcEEEEEccCCeEEeeeeCCC-----------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE
Q 014154          272 NIYIGNGSGDLASVDIRTGKLLGCFIGKC-----------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       272 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  340 (430)
                      .+++|+.+|.|.+|++.+.+++.+....|           ..+|++++..|...++++|+.+|.|++|-+..+-....+.
T Consensus       340 HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l  419 (479)
T KOG0299|consen  340 HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLL  419 (479)
T ss_pred             ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccccee
Confidence            88999999999999999998887765321           1279999999999999999999999999998872211111


Q ss_pred             eeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154          341 LKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND  376 (430)
Q Consensus       341 ~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~  376 (430)
                      ..-...+.|++++|+++|+.  +..+....+--|-...
T Consensus       420 ~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~k  457 (479)
T KOG0299|consen  420 YSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCLK  457 (479)
T ss_pred             eecccccEEEEEEEccCCCEEEEecccccccceeeEee
Confidence            22234667999999999996  4445555555565443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.3e-26  Score=204.62  Aligned_cols=331  Identities=14%  Similarity=0.143  Sum_probs=243.3

Q ss_pred             CCCcc-eeeecCCCceEEEEccCCCCCc-ceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC--cc
Q 014154           12 CPPLR-ALTFDSLGLIKVIEARGEHGGV-PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DL   87 (430)
Q Consensus        12 ~~~~~-l~t~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~--~~   87 (430)
                      -|..+ |+||+.||.|++|+........ ...+..+..|.+.+.-++++.    +|+.|++++.|-+|++|+...+  -+
T Consensus        34 a~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~----~~~tlIS~SsDtTVK~W~~~~~~~~c  109 (735)
T KOG0308|consen   34 APNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG----NGKTLISASSDTTVKVWNAHKDNTFC  109 (735)
T ss_pred             CCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc----CCCceEEecCCceEEEeecccCcchh
Confidence            34566 9999999999999987642111 124667788999888777776    3457999999999999999766  34


Q ss_pred             cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc-cccCCCcceEEeee--cCCCc
Q 014154           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-SAESSCSTVKSWNV--CASGT  164 (430)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-~~~~~~~~i~~~~~--~~~~~  164 (430)
                      +.++..        |.+.+.++.......       ..+++|+.|+.+.+|++...+. ..++ ...+..-..  .+...
T Consensus       110 ~stir~--------H~DYVkcla~~ak~~-------~lvaSgGLD~~IflWDin~~~~~l~~s-~n~~t~~sl~sG~k~s  173 (735)
T KOG0308|consen  110 MSTIRT--------HKDYVKCLAYIAKNN-------ELVASGGLDRKIFLWDINTGTATLVAS-FNNVTVNSLGSGPKDS  173 (735)
T ss_pred             Hhhhhc--------ccchheeeeecccCc-------eeEEecCCCccEEEEEccCcchhhhhh-ccccccccCCCCCccc
Confidence            444443        456888777743333       5899999999999999986543 1111 111111111  45578


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEEC
Q 014154          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  244 (430)
                      |.+++.++.+..|++|+.++.|++||.++++.+..+.+|.         ..|.++..  +++|..+++++.||+|++||+
T Consensus       174 iYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT---------dNVr~ll~--~dDGt~~ls~sSDgtIrlWdL  242 (735)
T KOG0308|consen  174 IYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT---------DNVRVLLV--NDDGTRLLSASSDGTIRLWDL  242 (735)
T ss_pred             eeeeecCCcceEEEecCcccceEEeccccccceeeeeccc---------cceEEEEE--cCCCCeEeecCCCceEEeeec
Confidence            9999999999999999999999999999999999999887         67999998  899999999999999999999


Q ss_pred             CCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154          245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                      ...+ ++.++..|...|.++..+|+-..+++|+.||.|..=|+++.+. ...++.  ..+|..+..+...+-+-+++.|+
T Consensus       243 gqQr-Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~~WvtTtds  319 (735)
T KOG0308|consen  243 GQQR-CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNSVWVTTTDS  319 (735)
T ss_pred             cccc-eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCCceeeeccc
Confidence            9855 5888999999999999999999999999999999999998543 333333  56788887775444456677889


Q ss_pred             cEEEEECCCCc-------eeeEEE-ee-------------ccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          324 YLRFWDIKTRQ-------LLSAVF-LK-------------QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       324 ~i~iwd~~~~~-------~~~~~~-~~-------------~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .|+-|-..-..       +..... ..             -+.+..+...+.-.|-+. ++-...|.+.+||.-.
T Consensus       320 ~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~  394 (735)
T KOG0308|consen  320 SIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA  394 (735)
T ss_pred             cceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence            99999654211       111000 00             011111233334445555 8888999999999865

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.94  E-value=4.9e-25  Score=186.04  Aligned_cols=275  Identities=36%  Similarity=0.591  Sum_probs=211.1

Q ss_pred             eeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCee
Q 014154           56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA  135 (430)
Q Consensus        56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  135 (430)
                      .+.|...++...|...+.+-.+....+........+....  ..+.....|.++...+          +.+++|..+|.+
T Consensus        60 ~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~--~~~l~~~~I~gl~~~d----------g~Litc~~sG~l  127 (412)
T KOG3881|consen   60 SLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK--TVSLGTKSIKGLKLAD----------GTLITCVSSGNL  127 (412)
T ss_pred             hheeecCCceeEeeccccCcccccccccCCcccccccccc--ccccccccccchhhcC----------CEEEEEecCCcE
Confidence            3333334445544444455556666555444333321100  1122334555544443          799999999999


Q ss_pred             EEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCC--CeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154          136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (430)
Q Consensus       136 ~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  212 (430)
                      .+|.+.+...    .+..+..|  ..+..+..+.-++.. ..+++|+..  ..+.+||++..+++++.+......+++..
T Consensus       128 ~~~~~k~~d~----hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrV  201 (412)
T KOG3881|consen  128 QVRHDKSGDL----HSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRV  201 (412)
T ss_pred             EEEeccCCcc----ccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCcccccee
Confidence            9999875431    01122223  334666667777754 455668988  88999999999999999999999999999


Q ss_pred             CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (430)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  292 (430)
                      +.|++++.|.+......|++++.-+.|++||.+.+++|+..+...+.+++++...|.+++|++|..-+.+..||++.++.
T Consensus       202 PvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  202 PVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence            99999999963333789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Eee-eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceE
Q 014154          293 LGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVV  349 (430)
Q Consensus       293 ~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  349 (430)
                      +.. +.+- .+.|++|..+|.+++|+++|-|..|||+|+++.++++.++++.+...++
T Consensus       282 ~g~~~kg~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il  338 (412)
T KOG3881|consen  282 LGCGLKGI-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFIL  338 (412)
T ss_pred             eccccCCc-cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEE
Confidence            877 6666 8999999999999999999999999999999999999888877754443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=8.5e-24  Score=183.96  Aligned_cols=321  Identities=13%  Similarity=0.115  Sum_probs=234.9

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~   96 (430)
                      ++|. .-|.+.+|++.++  ++.+....|+.++. ..+++++|  .++|+ +++|..+|.|.||+..+.+..+...    
T Consensus       216 iit~-Gk~H~~Fw~~~~~--~l~k~~~~fek~ek-k~Vl~v~F--~engd-viTgDS~G~i~Iw~~~~~~~~k~~~----  284 (626)
T KOG2106|consen  216 IITC-GKGHLYFWTLRGG--SLVKRQGIFEKREK-KFVLCVTF--LENGD-VITGDSGGNILIWSKGTNRISKQVH----  284 (626)
T ss_pred             EEEe-CCceEEEEEccCC--ceEEEeeccccccc-eEEEEEEE--cCCCC-EEeecCCceEEEEeCCCceEEeEee----
Confidence            3444 4488999999986  55555566777766 67888888  66776 8899999999999986666554443    


Q ss_pred             CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc---cccCCCcceE------------------
Q 014154           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---SAESSCSTVK------------------  155 (430)
Q Consensus        97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---~~~~~~~~i~------------------  155 (430)
                          .|++.+.++.....         +.++++..|..+..|+-...+.   .....-|.++                  
T Consensus       285 ----aH~ggv~~L~~lr~---------GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~i  351 (626)
T KOG2106|consen  285 ----AHDGGVFSLCMLRD---------GTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFI  351 (626)
T ss_pred             ----ecCCceEEEEEecC---------ccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceE
Confidence                35678877777654         6888899999999998433222   0000111111                  


Q ss_pred             ----------EeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          156 ----------SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       156 ----------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                                +--..|......++.+|+.+++++++.|+.+++|+  ..+.+++....          .++.|+.|  +|
T Consensus       352 L~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~----------d~~~~~~f--hp  417 (626)
T KOG2106|consen  352 LQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE----------DPAECADF--HP  417 (626)
T ss_pred             EEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec----------CceeEeec--cC
Confidence                      11123456788899999999999999999999999  55666654433          56889999  78


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCe
Q 014154          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSI  304 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v  304 (430)
                      .| .++.|+..|...+.|..+ +..+..... +.++++++|+|+|.+||.|+.|+.|+||-+... .....+..++.++|
T Consensus       418 sg-~va~Gt~~G~w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~i  494 (626)
T KOG2106|consen  418 SG-VVAVGTATGRWFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPI  494 (626)
T ss_pred             cc-eEEEeeccceEEEEeccc-ceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCcee
Confidence            88 999999999999999998 333443333 789999999999999999999999999988754 44444444446899


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEECCCCcee--------------eEEE-eeccccceEEeeeccccccc-cccCCCCc
Q 014154          305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLL--------------SAVF-LKQHLNEVVFDSAFADKEVA-NAAADAPM  368 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------------~~~~-~~~~~~~~v~~~~~s~~g~~-~~~~~d~~  368 (430)
                      +.+.||+|+++|.+-+.|-.|..|....-..+              --|. +.+..+..+..++-+.++++ +++.+.|.
T Consensus       495 thLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~  574 (626)
T KOG2106|consen  495 THLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGK  574 (626)
T ss_pred             EEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCce
Confidence            99999999999999999999999954321111              0010 11222444567778888888 88889999


Q ss_pred             eEecCCCCCc
Q 014154          369 LEIQNGNDTQ  378 (430)
Q Consensus       369 i~~~~~~~~~  378 (430)
                      |++|.++-..
T Consensus       575 v~lf~yPc~s  584 (626)
T KOG2106|consen  575 VHLFSYPCSS  584 (626)
T ss_pred             EEEEccccCC
Confidence            9999987543

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=2.9e-25  Score=190.91  Aligned_cols=246  Identities=16%  Similarity=0.198  Sum_probs=182.1

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeec-cCC-CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeec
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISN-AGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~  143 (430)
                      ..+|+++..+.|.|||..+-.-.....+ +.+ ....+|.+.-.++.|.....       +.+++++.++.+.+|++...
T Consensus       138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~-------g~Lls~~~d~~i~lwdi~~~  210 (422)
T KOG0264|consen  138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE-------GTLLSGSDDHTICLWDINAE  210 (422)
T ss_pred             cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc-------eeEeeccCCCcEEEEecccc
Confidence            4677788999999999864322221110 000 00112222222345444444       79999999999999999765


Q ss_pred             CccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCC--CeeeEeeCCCCCCCCCCcCCcceeEEE
Q 014154          144 KVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (430)
Q Consensus       144 ~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (430)
                      +.. ........++ ..|...|..++|++ +..++++++.|+.+.|||+++  .+.......|         ...|.|++
T Consensus       211 ~~~-~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah---------~~~vn~~~  279 (422)
T KOG0264|consen  211 SKE-DKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAH---------SAEVNCVA  279 (422)
T ss_pred             ccC-CccccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccccc---------CCceeEEE
Confidence            431 1112233344 47889999999999 667888999999999999995  3333333343         37899999


Q ss_pred             EeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCC---------
Q 014154          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG---------  290 (430)
Q Consensus       221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~---------  290 (430)
                      |. +.++..||+|+.|++|++||+|+...++..+.+|...|.+|.|+|.. ..|++++.|+.+.+||+..-         
T Consensus       280 fn-p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda  358 (422)
T KOG0264|consen  280 FN-PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA  358 (422)
T ss_pred             eC-CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence            95 34677999999999999999999888999999999999999999976 67888899999999998642         


Q ss_pred             -----eEEeeeeCCCCCCeEEEEecCCCCe-EEEEeCCCcEEEEECC
Q 014154          291 -----KLLGCFIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIK  331 (430)
Q Consensus       291 -----~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~dg~i~iwd~~  331 (430)
                           +++..-.|| ...|..+.|+|+..+ |++.+.|+.+.||...
T Consensus       359 ~dgppEllF~HgGH-~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  359 EDGPPELLFIHGGH-TAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccCCcceeEEecCc-ccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                 233445566 999999999999875 6778899999999975

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=3.3e-25  Score=200.22  Aligned_cols=285  Identities=15%  Similarity=0.152  Sum_probs=215.7

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcc-----------eee---------e--ecCC--------CCCCcceeeeeecCC
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVP-----------KVV---------E--RWGD--------PHSSNCVLAASIDDS   62 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~-----------~~~---------~--~~~~--------~~~~~~~~~~~~~~~   62 (430)
                      |+..++|++.||+||+|++.....+..           +..         .  ....        -.....+-+++.  +
T Consensus       391 p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v--S  468 (1080)
T KOG1408|consen  391 PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV--S  468 (1080)
T ss_pred             CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE--C
Confidence            667799999999999999986310000           000         0  0000        112233445666  8


Q ss_pred             CCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (430)
Q Consensus        63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~  142 (430)
                      |+|++||+|..-|.|+||++.+-+.+..++.        |+..|.++.+....-..     ..+++++.|..+.|+++..
T Consensus       469 p~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA--------HesEilcLeyS~p~~~~-----kLLASasrdRlIHV~Dv~r  535 (1080)
T KOG1408|consen  469 PDGQHLASGDRGGNLRVYDLQELEYTCFMEA--------HESEILCLEYSFPVLTN-----KLLASASRDRLIHVYDVKR  535 (1080)
T ss_pred             CCcceecccCccCceEEEEehhhhhhhheec--------ccceeEEEeecCchhhh-----HhhhhccCCceEEEEeccc
Confidence            8999999999999999999988777766655        45688888876654322     5788899999999999875


Q ss_pred             cCccccCCCcceEEeeecCCCceEEEEEcCCC--CEEEEEeCCCeEEEEECCC----CeeeEeeCCCCCCCCCCcCCcce
Q 014154          143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWF  216 (430)
Q Consensus       143 ~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~v  216 (430)
                      .-.       .+...+ .|...|+++.|..++  ..+++++.|..|. |+...    +... .-..+.      .....+
T Consensus       536 ny~-------l~qtld-~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f-~r~t~t------~~ktTl  599 (1080)
T KOG1408|consen  536 NYD-------LVQTLD-GHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLF-PRHTQT------LSKTTL  599 (1080)
T ss_pred             ccc-------hhhhhc-ccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceec-cccccc------cccceE
Confidence            543       233333 578899999998877  7889999997665 44332    2111 111110      011457


Q ss_pred             eEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE
Q 014154          217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (430)
Q Consensus       217 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~  293 (430)
                      ..++.  .|...++++++.|..|+|||+.+++. ...|++   |++...-+...|.|.||++.+.|.++.+||+.+++++
T Consensus       600 YDm~V--dp~~k~v~t~cQDrnirif~i~sgKq-~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv  676 (1080)
T KOG1408|consen  600 YDMAV--DPTSKLVVTVCQDRNIRIFDIESGKQ-VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV  676 (1080)
T ss_pred             EEeee--CCCcceEEEEecccceEEEeccccce-eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence            88888  88999999999999999999999775 777765   5677788889999999999999999999999999999


Q ss_pred             eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       294 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      .++.+| ...|+.+.|.+|-+.|++.+.||.|.||.+..
T Consensus       677 A~m~GH-sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  677 AQMTGH-SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             hhhcCc-chheeeeeecccchhheeecCCceEEEEECch
Confidence            999999 89999999999999999999999999999854

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=1.1e-25  Score=195.58  Aligned_cols=285  Identities=13%  Similarity=0.088  Sum_probs=220.2

Q ss_pred             CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEE
Q 014154           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (430)
Q Consensus        48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  127 (430)
                      |..-|+.++++.    ..++++||+. |.|+|||+....  .... +..+.....++.|.+..+++..        ..++
T Consensus       418 HGEvVcAvtIS~----~trhVyTgGk-gcVKVWdis~pg--~k~P-vsqLdcl~rdnyiRSckL~pdg--------rtLi  481 (705)
T KOG0639|consen  418 HGEVVCAVTISN----PTRHVYTGGK-GCVKVWDISQPG--NKSP-VSQLDCLNRDNYIRSCKLLPDG--------RTLI  481 (705)
T ss_pred             cCcEEEEEEecC----CcceeEecCC-CeEEEeeccCCC--CCCc-cccccccCcccceeeeEecCCC--------ceEE
Confidence            555555555543    3467899876 889999995331  1111 1122222334566666666654        4889


Q ss_pred             EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC
Q 014154          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (430)
Q Consensus       128 ~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  207 (430)
                      +++...++.||+++....       .|+.--.........++++|+.+..++++.||.|.|||+.+...++.+++|.   
T Consensus       482 vGGeastlsiWDLAapTp-------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGht---  551 (705)
T KOG0639|consen  482 VGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT---  551 (705)
T ss_pred             eccccceeeeeeccCCCc-------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCC---
Confidence            999999999999975432       3332222233567789999999999999999999999999999999999987   


Q ss_pred             CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (430)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~  287 (430)
                            +.+.|+..  +++|..|.+|+-|.+|+.||+++++++ .... ..+.|.++.++|++.+|++|-.++.+.+-..
T Consensus       552 ------DGascIdi--s~dGtklWTGGlDntvRcWDlregrql-qqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~  621 (705)
T KOG0639|consen  552 ------DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQL-QQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT  621 (705)
T ss_pred             ------CCceeEEe--cCCCceeecCCCccceeehhhhhhhhh-hhhh-hhhhheecccCCCccceeeecccCcEEEEec
Confidence                  77899999  899999999999999999999987652 2222 2368999999999999999999999988776


Q ss_pred             cCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC
Q 014154          288 RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA  366 (430)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d  366 (430)
                      . +...+.+..| .+-|.++.|.+.|+++++.+.|+.+..|.+.-|..+...    .....|.++..|-|.++ ++|+.|
T Consensus       622 s-kp~kyqlhlh-eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs----kE~SsVlsCDIS~ddkyIVTGSGd  695 (705)
T KOG0639|consen  622 S-KPEKYQLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISFDDKYIVTGSGD  695 (705)
T ss_pred             C-Cccceeeccc-ccEEEEEEecccCceeeecCchhhhhhccCccccceeec----cccCcceeeeeccCceEEEecCCC
Confidence            3 4445667676 889999999999999999999999999999988887653    22445799999999999 899999


Q ss_pred             CceEecCC
Q 014154          367 PMLEIQNG  374 (430)
Q Consensus       367 ~~i~~~~~  374 (430)
                      ....||..
T Consensus       696 kkATVYeV  703 (705)
T KOG0639|consen  696 KKATVYEV  703 (705)
T ss_pred             cceEEEEE
Confidence            88888764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=2.2e-23  Score=186.82  Aligned_cols=285  Identities=12%  Similarity=0.142  Sum_probs=198.6

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceeecc
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .+++++.||.|++||+.++     +.+..+..+.. +.  .+.+  +|+|+++ ++++.++.|++||..+++.+..+...
T Consensus         3 ~~~s~~~d~~v~~~d~~t~-----~~~~~~~~~~~-~~--~l~~--~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~   72 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATL-----EVTRTFPVGQR-PR--GITL--SKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG   72 (300)
T ss_pred             EEEEecCCCEEEEEECCCC-----ceEEEEECCCC-CC--ceEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC
Confidence            3678899999999999886     56666665543 22  3445  6778766 56778899999999888766554321


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceE-EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                               .....+.+.+..        ..+ +++..++.+.+|++....        .+..+.  ....+.+++|+|+
T Consensus        73 ---------~~~~~~~~~~~g--------~~l~~~~~~~~~l~~~d~~~~~--------~~~~~~--~~~~~~~~~~~~d  125 (300)
T TIGR03866        73 ---------PDPELFALHPNG--------KILYIANEDDNLVTVIDIETRK--------VLAEIP--VGVEPEGMAVSPD  125 (300)
T ss_pred             ---------CCccEEEECCCC--------CEEEEEcCCCCeEEEEECCCCe--------EEeEee--CCCCcceEEECCC
Confidence                     112234443322        244 445567899999875321        233332  2345678999999


Q ss_pred             CCEEEEEeCCC-eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE-eCCCcEEEEECCCCCcce
Q 014154          174 EKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       174 ~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~  251 (430)
                      +.+++++..++ .+.+||..+++........          ..+.+++|  ++++.+|+++ ..++.|++||+.+++. +
T Consensus       126 g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~----------~~~~~~~~--s~dg~~l~~~~~~~~~v~i~d~~~~~~-~  192 (300)
T TIGR03866       126 GKIVVNTSETTNMAHFIDTKTYEIVDNVLVD----------QRPRFAEF--TADGKELWVSSEIGGTVSVIDVATRKV-I  192 (300)
T ss_pred             CCEEEEEecCCCeEEEEeCCCCeEEEEEEcC----------CCccEEEE--CCCCCEEEEEcCCCCEEEEEEcCccee-e
Confidence            99999888765 4677899887765543221          23567888  8899887554 4699999999998653 4


Q ss_pred             EEEeecC-------CCeEEEEecCCCCEEEEE-eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE-eCC
Q 014154          252 MSFDFRE-------TPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GLD  322 (430)
Q Consensus       252 ~~~~~~~-------~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~d  322 (430)
                      ..+..+.       .....++|+|++++++++ +.++.|.+||+++++.+..+..  ...+.+++|+|++.+|+++ +.+
T Consensus       193 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~  270 (300)
T TIGR03866       193 KKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVS  270 (300)
T ss_pred             eeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe--CCCcceEEECCCCCEEEEEcCCC
Confidence            4443221       123468899999986554 4567899999999888766543  3478999999999998876 468


Q ss_pred             CcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          323 SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       323 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      +.|++||+.+++.+..+.+.    ...+.++++|
T Consensus       271 ~~i~v~d~~~~~~~~~~~~~----~~~~~~~~~~  300 (300)
T TIGR03866       271 NDVSVIDVAALKVIKSIKVG----RLPWGVVVRP  300 (300)
T ss_pred             CeEEEEECCCCcEEEEEEcc----cccceeEeCC
Confidence            99999999999999986532    2237777765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=9.7e-25  Score=196.66  Aligned_cols=262  Identities=13%  Similarity=0.116  Sum_probs=208.3

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceee--eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccccee
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVV--ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~   91 (430)
                      +..+++++.||++++|+-..+     +.+  ..+.+|.+-+... .++.. .++-.|++|+.|..|.+|...+..++..+
T Consensus        25 ~~~i~s~sRd~t~~vw~~~~~-----~~l~~~~~~~~~g~i~~~-i~y~e-~~~~~l~~g~~D~~i~v~~~~~~~P~~~L   97 (745)
T KOG0301|consen   25 GVCIISGSRDGTVKVWAKKGK-----QYLETHAFEGPKGFIANS-ICYAE-SDKGRLVVGGMDTTIIVFKLSQAEPLYTL   97 (745)
T ss_pred             CeEEeecCCCCceeeeeccCc-----ccccceecccCcceeecc-ceecc-ccCcceEeecccceEEEEecCCCCchhhh
Confidence            356899999999999999775     333  3355566654332 45533 34456999999999999999999999999


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      .+|.        ..+.++.....         +.+++++-|.+++||.+...          ...|. .|...|++++.-
T Consensus        98 kgH~--------snVC~ls~~~~---------~~~iSgSWD~TakvW~~~~l----------~~~l~-gH~asVWAv~~l  149 (745)
T KOG0301|consen   98 KGHK--------SNVCSLSIGED---------GTLISGSWDSTAKVWRIGEL----------VYSLQ-GHTASVWAVASL  149 (745)
T ss_pred             hccc--------cceeeeecCCc---------CceEecccccceEEecchhh----------hcccC-Ccchheeeeeec
Confidence            8863        35655554332         46899999999999986532          22343 788999999998


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  251 (430)
                      |++ .+++|+.|.+|++|.-  ++.+.++.+|.         +.|+.+++.   ++..|++|+.||.|++|++. +. .+
T Consensus       150 ~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHt---------D~VRgL~vl---~~~~flScsNDg~Ir~w~~~-ge-~l  212 (745)
T KOG0301|consen  150 PEN-TYVTGSADKTIKLWKG--GTLLKTFSGHT---------DCVRGLAVL---DDSHFLSCSNDGSIRLWDLD-GE-VL  212 (745)
T ss_pred             CCC-cEEeccCcceeeeccC--Cchhhhhccch---------hheeeeEEe---cCCCeEeecCCceEEEEecc-Cc-ee
Confidence            877 8889999999999986  56777777765         789999995   45578999999999999995 35 48


Q ss_pred             EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ..+.+|+.-|++++..+++..++++++|++++||+..  .+.+.+... .-.|+++.+-++|. +++|+.||.||||...
T Consensus       213 ~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lP-ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  213 LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLP-TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecC-ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            8899999999999988888899999999999999976  666666654 56899999999987 6788899999999876

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.5e-23  Score=172.71  Aligned_cols=270  Identities=14%  Similarity=0.157  Sum_probs=210.4

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec--CCeEEEecCCCCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK--NGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~--dg~i~iwd~~~~~~~~~~~   92 (430)
                      ..|+++++|.+|+|||...+     +.+..+..+.-.+....|..  ++  ..++.++.  |.+|++.++.+.+.++.|.
T Consensus        27 ~~litss~dDsl~LYd~~~g-----~~~~ti~skkyG~~~~~Fth--~~--~~~i~sStk~d~tIryLsl~dNkylRYF~   97 (311)
T KOG1446|consen   27 LLLITSSEDDSLRLYDSLSG-----KQVKTINSKKYGVDLACFTH--HS--NTVIHSSTKEDDTIRYLSLHDNKYLRYFP   97 (311)
T ss_pred             CEEEEecCCCeEEEEEcCCC-----ceeeEeecccccccEEEEec--CC--ceEEEccCCCCCceEEEEeecCceEEEcC
Confidence            67899999999999999998     77777777666666666665  32  23455554  8899999999999999977


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      +|        .+.+..+...+.+.        .+++++.|.++++|++....        ..-+...   ..-..++|+|
T Consensus        98 GH--------~~~V~sL~~sP~~d--------~FlS~S~D~tvrLWDlR~~~--------cqg~l~~---~~~pi~AfDp  150 (311)
T KOG1446|consen   98 GH--------KKRVNSLSVSPKDD--------TFLSSSLDKTVRLWDLRVKK--------CQGLLNL---SGRPIAAFDP  150 (311)
T ss_pred             CC--------CceEEEEEecCCCC--------eEEecccCCeEEeeEecCCC--------CceEEec---CCCcceeECC
Confidence            64        55888888877664        99999999999999988443        1222221   2334579999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCC--eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      +|-++|++.....|++||++.-  .+...+....      ......+.+.|  +|+|++|+.++..+.+++.|.-+|. .
T Consensus       151 ~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~------~~~~ew~~l~F--S~dGK~iLlsT~~s~~~~lDAf~G~-~  221 (311)
T KOG1446|consen  151 EGLIFALANGSELIKLYDLRSFDKGPFTTFSITD------NDEAEWTDLEF--SPDGKSILLSTNASFIYLLDAFDGT-V  221 (311)
T ss_pred             CCcEEEEecCCCeEEEEEecccCCCCceeEccCC------CCccceeeeEE--cCCCCEEEEEeCCCcEEEEEccCCc-E
Confidence            9999999988889999999753  2222222211      11256789999  9999999999999999999999877 4


Q ss_pred             eEEEeecCCCe---EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154          251 VMSFDFRETPI---KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (430)
Q Consensus       251 ~~~~~~~~~~i---~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i  327 (430)
                      ...+..+...-   -..+|+||++++++|+.||+|.+|+++++..+..+.+.+..++.++.|+|.-.++++++  ..+.+
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~f  299 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVF  299 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEE
Confidence            77777764322   56789999999999999999999999999999999985588999999999887777764  46778


Q ss_pred             EECC
Q 014154          328 WDIK  331 (430)
Q Consensus       328 wd~~  331 (430)
                      |=..
T Consensus       300 w~p~  303 (311)
T KOG1446|consen  300 WLPD  303 (311)
T ss_pred             Eecc
Confidence            8654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.9e-24  Score=177.12  Aligned_cols=265  Identities=15%  Similarity=0.171  Sum_probs=203.2

Q ss_pred             ceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (430)
Q Consensus        53 ~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (430)
                      .+..+.|  +|..+.|++++.||++++||+....+...+..         ..++....+.+.         ...++++.+
T Consensus        15 ~IS~v~f--~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~---------~~plL~c~F~d~---------~~~~~G~~d   74 (323)
T KOG1036|consen   15 GISSVKF--SPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH---------GAPLLDCAFADE---------STIVTGGLD   74 (323)
T ss_pred             ceeeEEE--cCcCCcEEEEeccCcEEEEeccchhhhhheec---------CCceeeeeccCC---------ceEEEeccC
Confidence            3556666  46777899999999999999987766655543         347776666653         478999999


Q ss_pred             CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (430)
Q Consensus       133 g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  212 (430)
                      |.++.+++..++.        ..+  -.|...|.|+.+.+....+++|+.|++|++||.+.......+...         
T Consensus        75 g~vr~~Dln~~~~--------~~i--gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~---------  135 (323)
T KOG1036|consen   75 GQVRRYDLNTGNE--------DQI--GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG---------  135 (323)
T ss_pred             ceEEEEEecCCcc--------eee--ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC---------
Confidence            9999999986652        111  256789999999999999999999999999999864443333322         


Q ss_pred             CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe-ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-
Q 014154          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-  290 (430)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-  290 (430)
                       ..|.++..    .++.|++|+.+..|.+||+++...+.+... .-...++|+++-|++.=.++++-||.|.+=.+... 
T Consensus       136 -kkVy~~~v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~  210 (323)
T KOG1036|consen  136 -KKVYCMDV----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSE  210 (323)
T ss_pred             -ceEEEEec----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCch
Confidence             45777777    688999999999999999998765543222 22457899999998888899999999887555444 


Q ss_pred             ---eEEeeeeCCC--------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc
Q 014154          291 ---KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV  359 (430)
Q Consensus       291 ---~~~~~~~~~~--------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  359 (430)
                         +..+.|+.|.        -.+|++|+|+|-...|+||+.||.|.+||+.+.+.+..+  ... ...|..++|+.||.
T Consensus       211 ~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~--~~~-~~SI~slsfs~dG~  287 (323)
T KOG1036|consen  211 EAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQL--AKY-ETSISSLSFSMDGS  287 (323)
T ss_pred             HHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhc--cCC-CCceEEEEeccCCC
Confidence               3344555551        237999999999999999999999999999999888874  333 44479999999999


Q ss_pred             c-cccC
Q 014154          360 A-NAAA  364 (430)
Q Consensus       360 ~-~~~~  364 (430)
                      . +.++
T Consensus       288 ~LAia~  293 (323)
T KOG1036|consen  288 LLAIAS  293 (323)
T ss_pred             eEEEEe
Confidence            8 4443

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.8e-24  Score=176.62  Aligned_cols=272  Identities=19%  Similarity=0.192  Sum_probs=205.2

Q ss_pred             CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (430)
Q Consensus        47 ~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  125 (430)
                      .+++.|..++|++  . ...++++|+.||+||+|+++. |......       ...+..++.++.|.+...        .
T Consensus        25 pP~DsIS~l~FSP--~-~~~~~~A~SWD~tVR~wevq~~g~~~~ka-------~~~~~~PvL~v~Wsddgs--------k   86 (347)
T KOG0647|consen   25 PPEDSISALAFSP--Q-ADNLLAAGSWDGTVRIWEVQNSGQLVPKA-------QQSHDGPVLDVCWSDDGS--------K   86 (347)
T ss_pred             CcccchheeEecc--c-cCceEEecccCCceEEEEEecCCcccchh-------hhccCCCeEEEEEccCCc--------e
Confidence            3567777777766  2 345777899999999999976 4433321       123456888777766554        8


Q ss_pred             EEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      +++++.|+.+++|++..+         .+...- .|.++|.++.|-+...  .|++|+.|.+|+.||.+...++.++..+
T Consensus        87 Vf~g~~Dk~~k~wDL~S~---------Q~~~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP  156 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASG---------QVSQVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP  156 (347)
T ss_pred             EEeeccCCceEEEEccCC---------Ceeeee-ecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc
Confidence            899999999999999754         333333 5778999999977555  8999999999999999988888877664


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDL  282 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i  282 (430)
                                +.+.++..    ...+++++..+..|.+|+++++......... -.-.++||+..++....+.|+-.|.+
T Consensus       157 ----------eRvYa~Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv  222 (347)
T KOG0647|consen  157 ----------ERVYAADV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV  222 (347)
T ss_pred             ----------ceeeehhc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence                      56777666    4568899999999999999875432222221 12357899999998888999999999


Q ss_pred             EEEEccCC--eEEeeeeCCC--------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEee
Q 014154          283 ASVDIRTG--KLLGCFIGKC--------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS  352 (430)
Q Consensus       283 ~iwd~~~~--~~~~~~~~~~--------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  352 (430)
                      .|..+..+  +.-..|+-|.        -..|++|+|+|....|+|+|.||++.+||-.....+..  .+.+ ...|++.
T Consensus       223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~--s~~~-~qpItcc  299 (347)
T KOG0647|consen  223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT--SETH-PQPITCC  299 (347)
T ss_pred             EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc--cCcC-CCcccee
Confidence            99988775  3344555552        12578899999999999999999999999887777766  3445 5568999


Q ss_pred             eccccccc-ccc
Q 014154          353 AFADKEVA-NAA  363 (430)
Q Consensus       353 ~~s~~g~~-~~~  363 (430)
                      +|+.+|.+ +.+
T Consensus       300 ~fn~~G~ifaYA  311 (347)
T KOG0647|consen  300 SFNRNGSIFAYA  311 (347)
T ss_pred             EecCCCCEEEEE
Confidence            99999998 443

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=6.2e-25  Score=179.93  Aligned_cols=285  Identities=15%  Similarity=0.171  Sum_probs=218.1

Q ss_pred             CCcceeeecCCCceEEEEccC-------------CCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEE
Q 014154           13 PPLRALTFDSLGLIKVIEARG-------------EHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI   79 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~i   79 (430)
                      ..+.++||+.|-.|+|.|++.             ++...-.++.++..|...|..+.|    +|....|++|+.|++|++
T Consensus       123 DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F----HPre~ILiS~srD~tvKl  198 (430)
T KOG0640|consen  123 DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF----HPRETILISGSRDNTVKL  198 (430)
T ss_pred             CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee----cchhheEEeccCCCeEEE
Confidence            347788999999999999872             111122577888899999776655    777889999999999999


Q ss_pred             ecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee
Q 014154           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV  159 (430)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~  159 (430)
                      +|+..-...+.++.+..      ..++.++.+.+...        .++.++....+++|++........+.      -+-
T Consensus       199 FDfsK~saKrA~K~~qd------~~~vrsiSfHPsGe--------fllvgTdHp~~rlYdv~T~Qcfvsan------Pd~  258 (430)
T KOG0640|consen  199 FDFSKTSAKRAFKVFQD------TEPVRSISFHPSGE--------FLLVGTDHPTLRLYDVNTYQCFVSAN------PDD  258 (430)
T ss_pred             EecccHHHHHHHHHhhc------cceeeeEeecCCCc--------eEEEecCCCceeEEeccceeEeeecC------ccc
Confidence            99976555555544322      13666777766543        77777777799999987544311110      122


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  239 (430)
                      .|.+.|+++.+++.+++.++++.||.|++||--+++++.++......       ..|.+..|  ..+++++++.+.|..+
T Consensus       259 qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g-------sevcSa~F--tkn~kyiLsSG~DS~v  329 (430)
T KOG0640|consen  259 QHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG-------SEVCSAVF--TKNGKYILSSGKDSTV  329 (430)
T ss_pred             ccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC-------ceeeeEEE--ccCCeEEeecCCccee
Confidence            56789999999999999999999999999999888888877553322       67999999  8999999999999999


Q ss_pred             EEEECCCCCcceEEEeecC-----CCeEEEEecCCCCEEEEEeC-CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154          240 RLYDTSAQRRPVMSFDFRE-----TPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~-----~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  313 (430)
                      ++|.+.+++ ++..+.+..     .--+...|+....+++.-.+ .+.+.-||.+++..+..+...|.+.+..+.-||.+
T Consensus       330 kLWEi~t~R-~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~  408 (430)
T KOG0640|consen  330 KLWEISTGR-MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVE  408 (430)
T ss_pred             eeeeecCCc-eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCC
Confidence            999999976 466666531     11234557766777776543 47799999999887776664459999999999999


Q ss_pred             CeEEEEeCCCcEEEEECC
Q 014154          314 PIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       314 ~~l~s~~~dg~i~iwd~~  331 (430)
                      .-+++|+.|-.+|+|--+
T Consensus       409 p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  409 PAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             Cceeeecccceeeeeeec
Confidence            999999999999999643

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=2e-23  Score=191.98  Aligned_cols=332  Identities=14%  Similarity=0.156  Sum_probs=231.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      -.+++++.++.+.||+...+..... +...+..-.+.- +.++.. .+.--+.++.|+..|.++||++.+++.+.+++++
T Consensus       125 e~lia~d~~~~l~vw~~s~~~~e~~-l~~~~~~~~~~~-Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~  201 (910)
T KOG1539|consen  125 EHLIAVDISNILFVWKTSSIQEELY-LQSTFLKVEGDF-ITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF  201 (910)
T ss_pred             ceEEEEEccCcEEEEEecccccccc-ccceeeeccCCc-eeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEeccc
Confidence            4578899999999999987311111 111222222221 444432 1112246889999999999999999999998874


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                      .        ..|+++.-.+.-        ..++.|..+|++.++++.+..        .+..|... .+.|+.++|..+|
T Consensus       202 ~--------s~IT~ieqsPaL--------DVVaiG~~~G~ViifNlK~dk--------il~sFk~d-~g~VtslSFrtDG  256 (910)
T KOG1539|consen  202 F--------SRITAIEQSPAL--------DVVAIGLENGTVIIFNLKFDK--------ILMSFKQD-WGRVTSLSFRTDG  256 (910)
T ss_pred             c--------cceeEeccCCcc--------eEEEEeccCceEEEEEcccCc--------EEEEEEcc-ccceeEEEeccCC
Confidence            2        366655544433        388999999999999998665        66666533 5899999999988


Q ss_pred             CE-EEEEeCCCeEEEEECCCCeeeEeeCC-CCCC-------------------------------------CCCCcCCcc
Q 014154          175 KF-SLFGGKGVEVNVWDLDKCEKIWTAKP-PPKN-------------------------------------SLGIFTPTW  215 (430)
Q Consensus       175 ~~-l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~-------------------------------------~~~~~~~~~  215 (430)
                      +. +++|+..|.+.+||++..+.+..... |...                                     .....|..+
T Consensus       257 ~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P  336 (910)
T KOG1539|consen  257 NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP  336 (910)
T ss_pred             CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC
Confidence            75 55667779999999987766554442 2100                                     011223444


Q ss_pred             eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC---------------------------cce-----------------
Q 014154          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---------------------------RPV-----------------  251 (430)
Q Consensus       216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------------------------~~~-----------------  251 (430)
                      ..++.|. ..++..+.+++.|++++.+++....                           .++                 
T Consensus       337 p~~irfy-~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~  415 (910)
T KOG1539|consen  337 PSCIRFY-GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI  415 (910)
T ss_pred             chheeee-ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence            5556664 3455666666666665555432100                           000                 


Q ss_pred             ---------------------EEEe-----ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee---eCCCCC
Q 014154          252 ---------------------MSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF---IGKCSG  302 (430)
Q Consensus       252 ---------------------~~~~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~  302 (430)
                                           ..+.     .-...+++++.++.|++.+.|+..|.|.+|++++|-....|   ..| ..
T Consensus       416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah-~~  494 (910)
T KOG1539|consen  416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH-KG  494 (910)
T ss_pred             EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc-cC
Confidence                                 0000     01146789999999999999999999999999999988888   466 89


Q ss_pred             CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE---------------------------------------eec
Q 014154          303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF---------------------------------------LKQ  343 (430)
Q Consensus       303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------------------------~~~  343 (430)
                      +|++++....++.+++++.+|.+.+||.++..++..+.                                       +.|
T Consensus       495 ~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g  574 (910)
T KOG1539|consen  495 EVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG  574 (910)
T ss_pred             ceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence            99999998888999999999999999997665322211                                       235


Q ss_pred             cccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          344 HLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       344 ~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      | +..|++++|||||++ ++++.|++|++||.+..
T Consensus       575 h-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  575 H-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             c-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence            5 556799999999999 99999999999998765

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=2.4e-24  Score=194.07  Aligned_cols=336  Identities=13%  Similarity=0.089  Sum_probs=234.8

Q ss_pred             CCcceeeecCCCceEEEEccCCCC-C-------------cc------eee------eecCCCCCCcceeeeeecCCCCCc
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHG-G-------------VP------KVV------ERWGDPHSSNCVLAASIDDSQNDP   66 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~-~-------------~~------~~~------~~~~~~~~~~~~~~~~~~~~p~g~   66 (430)
                      ....|+++++|..||||.+.-+.. .             .+      +..      ..+.+|++-|+  ++-|  +|.+.
T Consensus       205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~--sv~W--~p~~~  280 (764)
T KOG1063|consen  205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVY--SVWW--HPEGL  280 (764)
T ss_pred             CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceE--EEEE--ccchh
Confidence            457899999999999998865320 0             00      011      11236888744  4445  77887


Q ss_pred             eeEEeecCCeEEEecCCCCcccceeec-cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      .|++++.|.++.+|...+..-+..-.. ....+  +....+.+.. |+.+.       ..+++-+..|..++|.-. .+.
T Consensus       281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g--g~a~GF~g~l-w~~n~-------~~ii~~g~~Gg~hlWkt~-d~~  349 (764)
T KOG1063|consen  281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVG--GSAGGFWGGL-WSPNS-------NVIIAHGRTGGFHLWKTK-DKT  349 (764)
T ss_pred             hheecccCcceEEEecCCccceEEEEEEeeccc--ccccceeeEE-EcCCC-------CEEEEecccCcEEEEecc-Ccc
Confidence            899999999999998764422221111 01100  1122344433 33333       488888999999999811 100


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  224 (430)
                           .-.....--.|-..|..++|+|.|.+|++.+.|.+-|+|-.-.. ..-.++.-++.+      ...++|++|.  
T Consensus       350 -----~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH------GyDl~c~~~v--  416 (764)
T KOG1063|consen  350 -----FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH------GYDLTCLSFV--  416 (764)
T ss_pred             -----ceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccc------cccceeeehc--
Confidence                 00111111246678999999999999999999999999876421 112333333322      2457889995  


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCC--------------------------------------------------------
Q 014154          225 DDHRKFVAGTNDHQVRLYDTSAQR--------------------------------------------------------  248 (430)
Q Consensus       225 ~~~~~l~s~~~dg~i~iwd~~~~~--------------------------------------------------------  248 (430)
                      +....+++|.....+|+|+....-                                                        
T Consensus       417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~  496 (764)
T KOG1063|consen  417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA  496 (764)
T ss_pred             cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence            335678888888889998753100                                                        


Q ss_pred             -------------------cceEEEeecCCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEeeeeCCCCCCe
Q 014154          249 -------------------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSI  304 (430)
Q Consensus       249 -------------------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v  304 (430)
                                         ..++.+.+|...|++++.+|+++++++++..     ..|++|+..+-..++.+.+| .-.|
T Consensus       497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~H-sLTV  575 (764)
T KOG1063|consen  497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGH-SLTV  575 (764)
T ss_pred             chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheeccc-ceEE
Confidence                               1123446788899999999999999999855     45999999999888899998 8999


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEECCCCceee-EEE-eeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154          305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS-AVF-LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~-~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                      +.++||||+++|++.+.|.++.+|......... .+. .+.| ..+|+++.|+|++++ ++++.|.+|++|..+...
T Consensus       576 T~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H-tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~  651 (764)
T KOG1063|consen  576 TRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH-TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR  651 (764)
T ss_pred             EEEEECCCCcEEEEeecCceEEeeeeecccchhhhhcccccc-ceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence            999999999999999999999999885432211 111 4567 788999999999997 999999999999988763

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.8e-23  Score=159.94  Aligned_cols=293  Identities=14%  Similarity=0.149  Sum_probs=209.9

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCccccee-ec-cCC-----CCCCCCCCceEEEEEeecCcccccccCceE
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI-SN-AGD-----SGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~-~~-~~~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  126 (430)
                      +-++.|  +|.|.+.|+|+...+++|.....-..++.- +. ..+     -..--+.+.|.+..|.+..        ..+
T Consensus        35 irav~f--hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g--------eli  104 (350)
T KOG0641|consen   35 IRAVAF--HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG--------ELI  104 (350)
T ss_pred             eeeEEe--cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc--------CeE
Confidence            455666  999999999999999999876422111100 00 000     0011244556655554433        477


Q ss_pred             EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC----CCCEEEEEe-CCCeEEEEECCCCeeeEeeC
Q 014154          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI----SEKFSLFGG-KGVEVNVWDLDKCEKIWTAK  201 (430)
Q Consensus       127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~----~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~  201 (430)
                      ++++.|.++.+..+.....   ...|.-.-++ .|.+.|..++|-.    .+..|++++ .|..|++-|..+++....+.
T Consensus       105 atgsndk~ik~l~fn~dt~---~~~g~dle~n-mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  105 ATGSNDKTIKVLPFNADTC---NATGHDLEFN-MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             EecCCCceEEEEecccccc---cccCcceeee-ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            8888888888776543222   1112222333 3568899999954    355666654 47788888999999988888


Q ss_pred             CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee--c-----CCCeEEEEecCCCCEEE
Q 014154          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--R-----ETPIKAVAEEPDSFNIY  274 (430)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~-----~~~i~~~~~sp~~~~l~  274 (430)
                      +|.+         .|.++-   +-++-.+++|+.|.+|++||++-..+ +.++..  |     .+.|.+++..|.|++|+
T Consensus       181 ghtg---------hilaly---swn~~m~~sgsqdktirfwdlrv~~~-v~~l~~~~~~~glessavaav~vdpsgrll~  247 (350)
T KOG0641|consen  181 GHTG---------HILALY---SWNGAMFASGSQDKTIRFWDLRVNSC-VNTLDNDFHDGGLESSAVAAVAVDPSGRLLA  247 (350)
T ss_pred             CCcc---------cEEEEE---EecCcEEEccCCCceEEEEeeeccce-eeeccCcccCCCcccceeEEEEECCCcceee
Confidence            8774         344432   34788999999999999999997543 544432  2     25789999999999999


Q ss_pred             EEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC--ceeeEEEeeccccceEEee
Q 014154          275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR--QLLSAVFLKQHLNEVVFDS  352 (430)
Q Consensus       275 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~  352 (430)
                      +|-.|....+||++.+++++.|..| ...|.++.|+|...+|++++.|..|++=|++..  ..+..+....| ...+..+
T Consensus       248 sg~~dssc~lydirg~r~iq~f~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh-kdk~i~~  325 (350)
T KOG0641|consen  248 SGHADSSCMLYDIRGGRMIQRFHPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH-KDKAIQC  325 (350)
T ss_pred             eccCCCceEEEEeeCCceeeeeCCC-ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec-cCceEEE
Confidence            9999999999999999999999998 999999999999999999999999999998731  11222223445 4445788


Q ss_pred             eccccccc-cccCCCCceEecCCC
Q 014154          353 AFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       353 ~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      .|+|..-. ++.+.|.++.+|..+
T Consensus       326 rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  326 RWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EecCccceeeeccCcceEEEeccC
Confidence            99998876 999999999999765

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.93  E-value=1.2e-23  Score=183.04  Aligned_cols=324  Identities=15%  Similarity=0.092  Sum_probs=226.3

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      ++.-++||+.+|.|.||+..+.     +.......|++.|.++.+.-    +|. |++|+.|..|..|| .+-+.++..+
T Consensus       256 engdviTgDS~G~i~Iw~~~~~-----~~~k~~~aH~ggv~~L~~lr----~Gt-llSGgKDRki~~Wd-~~y~k~r~~e  324 (626)
T KOG2106|consen  256 ENGDVITGDSGGNILIWSKGTN-----RISKQVHAHDGGVFSLCMLR----DGT-LLSGGKDRKIILWD-DNYRKLRETE  324 (626)
T ss_pred             CCCCEEeecCCceEEEEeCCCc-----eEEeEeeecCCceEEEEEec----Ccc-EeecCccceEEecc-cccccccccc
Confidence            4577999999999999999775     44444448999977777665    343 77799999999999 4444444433


Q ss_pred             c---cCCCC--CCCCCCceEEEEEeecCcccccccCceEEEE---------ccCCeeEEEEeeecCc----cccCCCcce
Q 014154           93 N---AGDSG--AQPEDDGIVGLHLFKRQREESSSRSRTLLTC---------TTKGKASMRSIEVTKV----SAESSCSTV  154 (430)
Q Consensus        93 ~---~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~v~~~~~~~~----~~~~~~~~i  154 (430)
                      .   ..++.  .....+-+.+     .       .++.++-+         ...+.-.+|.++..+.    ++.+.|+.+
T Consensus       325 lPe~~G~iRtv~e~~~di~vG-----T-------trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v  392 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVG-----T-------TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHV  392 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEe-----e-------ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceE
Confidence            2   00000  0011111110     0       00122222         1233336677766665    677778888


Q ss_pred             EEeeecC--------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC
Q 014154          155 KSWNVCA--------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (430)
Q Consensus       155 ~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (430)
                      ++|+ .|        ..++.|+.|+|.+ .++.|+..|...+.|.++...+..-.. .         .++++++|  +|+
T Consensus       393 ~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~---------~~ls~v~y--sp~  458 (626)
T KOG2106|consen  393 RLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-N---------EQLSVVRY--SPD  458 (626)
T ss_pred             EEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-C---------CceEEEEE--cCC
Confidence            8887 44        3678899999999 999999999999999998555443332 2         77999999  899


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCcceEEE-eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe-----------
Q 014154          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG-----------  294 (430)
Q Consensus       227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~-----------  294 (430)
                      |.+||.|+.|+.|+||-+.......... ..+.++|+.+.||+|+++|.+-+.|-.|..|.....+.+.           
T Consensus       459 G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~  538 (626)
T KOG2106|consen  459 GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYT  538 (626)
T ss_pred             CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeE
Confidence            9999999999999999988655433333 3355899999999999999999999999999543221111           


Q ss_pred             ------eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE-EeeccccceEEeeeccccccc-cccCCC
Q 014154          295 ------CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV-FLKQHLNEVVFDSAFADKEVA-NAAADA  366 (430)
Q Consensus       295 ------~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~-~~~~~d  366 (430)
                            .+-+.+...|..++-+...+++++|.+.|.|++|...=-+....+ .+.+| +..+.+++|.-+... ++.+.|
T Consensus       539 c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~gh-s~~vt~V~Fl~~d~~li~tg~D  617 (626)
T KOG2106|consen  539 CTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGH-SSHVTNVAFLCKDSHLISTGKD  617 (626)
T ss_pred             EEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccc-cceeEEEEEeeCCceEEecCCC
Confidence                  111222445667777778889999999999999987533322221 15677 667899999988777 787899


Q ss_pred             CceEecCC
Q 014154          367 PMLEIQNG  374 (430)
Q Consensus       367 ~~i~~~~~  374 (430)
                      ..|..|+.
T Consensus       618 ~Si~qW~l  625 (626)
T KOG2106|consen  618 TSIMQWRL  625 (626)
T ss_pred             ceEEEEEe
Confidence            99999974

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.2e-24  Score=172.48  Aligned_cols=240  Identities=15%  Similarity=0.116  Sum_probs=181.5

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      -..||+|++.|++|||+..+.+  +..+++.++.+|.+++.-+++..  ...|.+||+++.||.|.||.-.+|+-.... 
T Consensus        22 ygkrlATcsSD~tVkIf~v~~n--~~s~ll~~L~Gh~GPVwqv~wah--Pk~G~iLAScsYDgkVIiWke~~g~w~k~~-   96 (299)
T KOG1332|consen   22 YGKRLATCSSDGTVKIFEVRNN--GQSKLLAELTGHSGPVWKVAWAH--PKFGTILASCSYDGKVIIWKEENGRWTKAY-   96 (299)
T ss_pred             hcceeeeecCCccEEEEEEcCC--CCceeeeEecCCCCCeeEEeecc--cccCcEeeEeecCceEEEEecCCCchhhhh-
Confidence            3479999999999999999985  44568889999999977776665  778999999999999999997766422111 


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                                                                                     .| ..|...|++++|.|
T Consensus        97 ---------------------------------------------------------------e~-~~h~~SVNsV~wap  112 (299)
T KOG1332|consen   97 ---------------------------------------------------------------EH-AAHSASVNSVAWAP  112 (299)
T ss_pred             ---------------------------------------------------------------hh-hhhcccceeecccc
Confidence                                                                           01 13556778888877


Q ss_pred             --CCCEEEEEeCCCeEEEEECCCC-ee--eEeeCCCCCCCCCCcCCcceeEEEEeecCC-C-----------CEEEEEeC
Q 014154          173 --SEKFSLFGGKGVEVNVWDLDKC-EK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-H-----------RKFVAGTN  235 (430)
Q Consensus       173 --~~~~l~~~~~d~~i~~~d~~~~-~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~-----------~~l~s~~~  235 (430)
                        .|-.|++++.||.|.+.+++.. .-  ......         |...|+++.|.|..- |           ..|++|+.
T Consensus       113 heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a---------H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc  183 (299)
T KOG1332|consen  113 HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA---------HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC  183 (299)
T ss_pred             cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc---------cccccceeeecCcCCCccccccCcccccceeeccCC
Confidence              4678899999999999988653 11  111122         335578888843211 2           56999999


Q ss_pred             CCcEEEEECCCCCc-ceEEEeecCCCeEEEEecCCC----CEEEEEeCCCcEEEEEccCC--eE-EeeeeCCCCCCeEEE
Q 014154          236 DHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDS----FNIYIGNGSGDLASVDIRTG--KL-LGCFIGKCSGSIRSI  307 (430)
Q Consensus       236 dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~d~~i~iwd~~~~--~~-~~~~~~~~~~~v~~i  307 (430)
                      |..|+||+...+.- .-.++.+|...|+.++|.|.-    .+|++++.||++.||-.+..  +- ...+... ...+..+
T Consensus       184 Dn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-~~~~w~v  262 (299)
T KOG1332|consen  184 DNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-PDVVWRV  262 (299)
T ss_pred             ccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC-CcceEEE
Confidence            99999999987532 234588999999999999964    68999999999999977632  11 1122233 5689999


Q ss_pred             EecCCCCeEEEEeCCCcEEEEECC
Q 014154          308 ARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       308 ~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      .||+.|.+|+.++.|+.|.+|.-.
T Consensus       263 SWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  263 SWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEeccccEEEEecCCcEEEEEEeC
Confidence            999999999999999999999754

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.9e-24  Score=185.21  Aligned_cols=284  Identities=18%  Similarity=0.181  Sum_probs=203.7

Q ss_pred             CCceEEEEccCCCCCcceeeeecCCC-CCC-cceeeeeecCCCCCceeEEee-cCCeEEEecCCCCcccceeeccCCCCC
Q 014154           23 LGLIKVIEARGEHGGVPKVVERWGDP-HSS-NCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNAGDSGA   99 (430)
Q Consensus        23 dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~p~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~   99 (430)
                      ...+.+||+++|     ..+.+|++. ... ....++.      +.|++++. .-..|.+|.+........ ..+-    
T Consensus        17 ~~~~~~~dl~TG-----t~~~~ykg~~~a~~~sl~~l~------~~yllsaq~~rp~l~vw~i~k~~~~~q-~~v~----   80 (476)
T KOG0646|consen   17 PINCIVWDLRTG-----TSLLQYKGSYLAQAASLTALN------NEYLLSAQLKRPLLHVWEILKKDQVVQ-YIVL----   80 (476)
T ss_pred             CcceeEEecCCC-----ceeEEecCcccccchhhhhhc------hhheeeecccCccccccccCchhhhhh-hccc----
Confidence            345999999998     555566653 111 1111221      14566654 445799999865443331 1111    


Q ss_pred             CCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEE
Q 014154          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (430)
Q Consensus       100 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~  179 (430)
                         .+++.++...+..        ..+++++..|.+++|.+..+.        .+.+|. .|-+.|+|+.|+.++.+|++
T Consensus        81 ---Pg~v~al~s~n~G--------~~l~ag~i~g~lYlWelssG~--------LL~v~~-aHYQ~ITcL~fs~dgs~iiT  140 (476)
T KOG0646|consen   81 ---PGPVHALASSNLG--------YFLLAGTISGNLYLWELSSGI--------LLNVLS-AHYQSITCLKFSDDGSHIIT  140 (476)
T ss_pred             ---ccceeeeecCCCc--------eEEEeecccCcEEEEEecccc--------HHHHHH-hhccceeEEEEeCCCcEEEe
Confidence               1355555554443        255666699999999997654        666774 78899999999999999999


Q ss_pred             EeCCCeEEEEECCC---------CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154          180 GGKGVEVNVWDLDK---------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       180 ~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      |+.||.|.+|.+.+         .++...+..|         .-.|+.+...+.+...+|++++.|.++++||+..+. .
T Consensus       141 gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H---------tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-L  210 (476)
T KOG0646|consen  141 GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH---------TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-L  210 (476)
T ss_pred             cCCCccEEEEEEEeecccccCCCccceeeeccC---------cceeEEEEecCCCccceEEEecCCceEEEEEeccce-e
Confidence            99999999998742         2233334443         366888887544445699999999999999999875 3


Q ss_pred             eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC----------------eEEeeeeCCCCC--CeEEEEecCC
Q 014154          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----------------KLLGCFIGKCSG--SIRSIARHPT  312 (430)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~----------------~~~~~~~~~~~~--~v~~i~~~~~  312 (430)
                      +.++.. ...+.+++++|-++.+++|+.+|.|.+.++.+.                ..+..+.+| ..  .|+|++.+-|
T Consensus       211 Llti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh-~~~~~ITcLais~D  288 (476)
T KOG0646|consen  211 LLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH-ENESAITCLAISTD  288 (476)
T ss_pred             eEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc-cCCcceeEEEEecC
Confidence            555554 368999999999999999999999999887532                234566777 55  9999999999


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154          313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      |.+|++|+.||.|+|||+.+.+++.++.   +..+.|+.+.+.|-
T Consensus       289 gtlLlSGd~dg~VcvWdi~S~Q~iRtl~---~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  289 GTLLLSGDEDGKVCVWDIYSKQCIRTLQ---TSKGPVTNLQINPL  330 (476)
T ss_pred             ccEEEeeCCCCCEEEEecchHHHHHHHh---hhccccceeEeecc
Confidence            9999999999999999999999988753   12333555555443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=4.1e-24  Score=183.95  Aligned_cols=269  Identities=16%  Similarity=0.206  Sum_probs=202.6

Q ss_pred             cceeeecCCCceEEEEccCCCCC--ccee---e----eec----CCCCCCcceeeeeecCCCCCceeEEeecCCeEEEec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGG--VPKV---V----ERW----GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILN   81 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~--~~~~---~----~~~----~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd   81 (430)
                      .+.++++.+|+|.=|++.++...  +.+.   +    ..+    ..|...  +++++.  +|||+|||+|+.|..|.||+
T Consensus       155 ~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ke--il~~av--S~Dgkylatgg~d~~v~Iw~  230 (479)
T KOG0299|consen  155 KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKE--ILTLAV--SSDGKYLATGGRDRHVQIWD  230 (479)
T ss_pred             cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccce--eEEEEE--cCCCcEEEecCCCceEEEec
Confidence            58999999999999999886311  1100   0    011    134444  555655  78999999999999999999


Q ss_pred             CCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC
Q 014154           82 PLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA  161 (430)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~  161 (430)
                      ..+.+.+..+.+|        .+.+.++.+.....        .+++++.|..+.+|+++...        .+..+ ..|
T Consensus       231 ~~t~ehv~~~~gh--------r~~V~~L~fr~gt~--------~lys~s~Drsvkvw~~~~~s--------~vetl-yGH  285 (479)
T KOG0299|consen  231 CDTLEHVKVFKGH--------RGAVSSLAFRKGTS--------ELYSASADRSVKVWSIDQLS--------YVETL-YGH  285 (479)
T ss_pred             Ccccchhhccccc--------ccceeeeeeecCcc--------ceeeeecCCceEEEehhHhH--------HHHHH-hCC
Confidence            9999988887664        56888888877665        89999999999999986432        33333 267


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      ...|..+....-++.+-+|+.|.++++|++.....+ .+.++.         ..+.|++|.   +...+++|+.+|.|.+
T Consensus       286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~---------~sidcv~~I---n~~HfvsGSdnG~IaL  352 (479)
T KOG0299|consen  286 QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGE---------GSIDCVAFI---NDEHFVSGSDNGSIAL  352 (479)
T ss_pred             ccceeeechhcccceEEeccccceeEEEecccccee-eeeCCC---------CCeeeEEEe---cccceeeccCCceEEE
Confidence            788999988878888888889999999999543222 233332         678999996   6678999999999999


Q ss_pred             EECCCCCcceEEEee-c-----------CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC----eEEeeeeCCCCCCeE
Q 014154          242 YDTSAQRRPVMSFDF-R-----------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIR  305 (430)
Q Consensus       242 wd~~~~~~~~~~~~~-~-----------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~  305 (430)
                      |++... +|+.+... |           ...|++++..|...++++|+.+|.|++|-+..+    +++..+..  .+-|+
T Consensus       353 Ws~~KK-kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~--~GfVN  429 (479)
T KOG0299|consen  353 WSLLKK-KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL--VGFVN  429 (479)
T ss_pred             eeeccc-CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc--ccEEE
Confidence            999974 45554432 2           127899999999999999999999999998876    45666663  67899


Q ss_pred             EEEecCCCCeEEEE-eCCCcEEEE
Q 014154          306 SIARHPTLPIIASC-GLDSYLRFW  328 (430)
Q Consensus       306 ~i~~~~~~~~l~s~-~~dg~i~iw  328 (430)
                      +++|+++|++|++| +....+--|
T Consensus       430 sl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  430 SLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             EEEEccCCCEEEEeccccccccee
Confidence            99999999966555 444444444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.4e-26  Score=207.76  Aligned_cols=258  Identities=20%  Similarity=0.278  Sum_probs=209.1

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      .+++.+..+-.+++|+......              |...+.++++-. ..       ..++.|+.++.+.+|.+.....
T Consensus         5 ~~~m~~~~~t~Lr~~~~~~~~~--------------hsaav~~lk~~~-s~-------r~~~~Gg~~~k~~L~~i~kp~~   62 (825)
T KOG0267|consen    5 EFLMKTKRATKLRVWDTREFVA--------------HSAAVGCLKIRK-SS-------RSLVTGGEDEKVNLWAIGKPNA   62 (825)
T ss_pred             cccceeeeeeccccccchhhhh--------------hhhhhceeeeec-cc-------eeeccCCCceeeccccccCCch
Confidence            3455555666678888643221              112333444421 11       4678888888898998765432


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                              +.-+. .|...|.++.|++...+|+.|+.+|+|++||++..+.++++.+|.         ..+.++.|  +|
T Consensus        63 --------i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~---------~~~~sv~f--~P  122 (825)
T KOG0267|consen   63 --------ITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHL---------LNITSVDF--HP  122 (825)
T ss_pred             --------hheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccc---------cCcceeee--cc
Confidence                    22233 678999999999999999999999999999999999888888876         66888899  89


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  305 (430)
                      -+.++++|+.|..+++||.+... +...+.+|...+.++.|+|+|++++.|++|..++|||+..|+.+..|..| .+.+.
T Consensus       123 ~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~-e~~v~  200 (825)
T KOG0267|consen  123 YGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH-EGKVQ  200 (825)
T ss_pred             ceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc-ccccc
Confidence            99999999999999999999644 58889999999999999999999999999999999999999999999998 99999


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceE
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE  370 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~  370 (430)
                      .+.|+|..-++++||.|++|++||+++.+.+..  .+.. ...|.+++|+|+++.+..+..-.+.
T Consensus       201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s--~~~~-~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS--GKPE-TDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             ccccCchhhhhccCCCCceeeeeccceeEEeec--cCCc-cCCceeeeecCCceeeecCchhhhh
Confidence            999999999999999999999999999888876  4444 4446899999999985555544444

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.1e-24  Score=183.99  Aligned_cols=293  Identities=15%  Similarity=0.112  Sum_probs=218.9

Q ss_pred             CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEE
Q 014154           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (430)
Q Consensus        48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  127 (430)
                      |...-.+.++.|  +|..++|++++.||+++||.+. |+.-..++...     ...-+|....+.+...       ..++
T Consensus       210 ~ps~~~I~sv~F--Hp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~-----l~~fPi~~a~f~p~G~-------~~i~  274 (514)
T KOG2055|consen  210 HPSHGGITSVQF--HPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIH-----LEKFPIQKAEFAPNGH-------SVIF  274 (514)
T ss_pred             CcCcCCceEEEe--cCCCceEEEecCCCcEEEEEec-CccChhheeee-----eccCccceeeecCCCc-------eEEE
Confidence            444445777778  9999999999999999999984 44332222210     0113566666666443       4788


Q ss_pred             EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC
Q 014154          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS  207 (430)
Q Consensus       128 ~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~  207 (430)
                      +++.......|++.....      ..+....-.....+....++|++++|+..+..|.|.+....+++.+..++..    
T Consensus       275 ~s~rrky~ysyDle~ak~------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Kie----  344 (514)
T KOG2055|consen  275 TSGRRKYLYSYDLETAKV------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIE----  344 (514)
T ss_pred             ecccceEEEEeecccccc------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeec----
Confidence            888888889998864331      0111111111345777888999999999999999999999999888877764    


Q ss_pred             CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC-CCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 014154          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (430)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd  286 (430)
                            +.|..++|  +.++..|++++.+|.|.+||++... .++.+.... -.-++++.++++.+||+|+..|.|.|||
T Consensus       345 ------G~v~~~~f--sSdsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  345 ------GVVSDFTF--SSDSKELLASGGTGEVYVWNLRQNS-CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             ------cEEeeEEE--ecCCcEEEEEcCCceEEEEecCCcc-eEEEEeecCccceeeeeecCCCceEEeccCcceEEEec
Confidence                  67899999  7889999999999999999999864 466665432 2346778889999999999999999999


Q ss_pred             ccC------CeEEeeeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154          287 IRT------GKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       287 ~~~------~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      ..+      .+++..+..- ...|++++|+|+.++|+.+|  .+..+|+-.+.+......++..+..-+.+++++|||.+
T Consensus       416 ~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s  494 (514)
T KOG2055|consen  416 GNSCFASTNPKPIKTVDNL-TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS  494 (514)
T ss_pred             cchhhccCCCCchhhhhhh-heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC
Confidence            653      4566666655 67899999999999998886  56789999998877766654333333447999999988


Q ss_pred             cc-cccCCCCceEecCCC
Q 014154          359 VA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       359 ~~-~~~~~d~~i~~~~~~  375 (430)
                      -+ +.|..+|.+.+|...
T Consensus       495 G~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  495 GYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ceEEeecCCCceeeEeec
Confidence            87 999999999999753

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.93  E-value=2.5e-23  Score=169.45  Aligned_cols=294  Identities=10%  Similarity=0.056  Sum_probs=217.3

Q ss_pred             CCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce----eec---cCCCCCCCCCCceEEEEEeecCccc
Q 014154           46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA----ISN---AGDSGAQPEDDGIVGLHLFKRQREE  118 (430)
Q Consensus        46 ~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~----~~~---~~~~~~~~~~~~i~~~~~~~~~~~~  118 (430)
                      ..|.+.|..+.+..   ..|+|+++|+.||.|.+||+++......    .+.   +....-..|.-.|..+.|++.+.  
T Consensus        40 r~HgGsvNsL~id~---tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt--  114 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDL---TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT--  114 (397)
T ss_pred             ccCCCccceeeecc---ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC--
Confidence            34778877666654   4789999999999999999976541110    111   11112224566788899999988  


Q ss_pred             ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCe
Q 014154          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCE  195 (430)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~  195 (430)
                           +.+.+++.|++++||+.....        ....|.  ..+.|.+-+++|   ...++|+|..+-.|++.|+.+|.
T Consensus       115 -----GmFtssSFDhtlKVWDtnTlQ--------~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs  179 (397)
T KOG4283|consen  115 -----GMFTSSSFDHTLKVWDTNTLQ--------EAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS  179 (397)
T ss_pred             -----ceeecccccceEEEeecccce--------eeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence                 899999999999999976443        333444  357888888888   45688889999999999999999


Q ss_pred             eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcceEEE--------------eecCCC
Q 014154          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSF--------------DFRETP  260 (430)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~~  260 (430)
                      ..+.+.+|.         ..|.++.|  +|... .|++|+.||.|++||++...-....+              ..|.+.
T Consensus       180 ~sH~LsGHr---------~~vlaV~W--sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk  248 (397)
T KOG4283|consen  180 FSHTLSGHR---------DGVLAVEW--SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK  248 (397)
T ss_pred             ceeeecccc---------CceEEEEe--ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence            999999987         67999999  55544 78899999999999998642223332              346678


Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC--CCC---CeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154          261 IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSG---SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       261 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~---~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  335 (430)
                      +..++|+.++.++++.+.|..+++|+..+|+-...-.+.  +..   .-..+. +-+...++---.++.+.++++-++..
T Consensus       249 vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~  327 (397)
T KOG4283|consen  249 VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSF  327 (397)
T ss_pred             eeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceE
Confidence            999999999999999999999999999887642211110  011   111122 23333444445668899999999999


Q ss_pred             eeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154          336 LSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       336 ~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      +..  +.+| ...+.+.+|.|+=+. .++..|+.+..|-.
T Consensus       328 ir~--l~~h-~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  328 VRR--LSTH-LKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEe--eecc-cceeeEEeecCchhhhhccccCCccccccc
Confidence            987  6778 555789999998776 88999999999976

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.6e-24  Score=171.77  Aligned_cols=237  Identities=13%  Similarity=0.145  Sum_probs=184.8

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCee--eEe
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEK--IWT  199 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~--~~~  199 (430)
                      .++++|+.|++++|+.+..+..     ...+-.. ..|.++|..++|..  -|.+|++++.||.|.||.-+.++-  ..+
T Consensus        24 krlATcsSD~tVkIf~v~~n~~-----s~ll~~L-~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e   97 (299)
T KOG1332|consen   24 KRLATCSSDGTVKIFEVRNNGQ-----SKLLAEL-TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYE   97 (299)
T ss_pred             ceeeeecCCccEEEEEEcCCCC-----ceeeeEe-cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhh
Confidence            5899999999999999874431     0122222 36889999999965  799999999999999999887732  222


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC--CcceEEEeecCCCeEEEEecCC---C----
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPD---S----  270 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~sp~---~----  270 (430)
                      ...|         ...|++++|.|+.-|-.|++++.||.|.|.+.+..  .........|...|++++|.|-   |    
T Consensus        98 ~~~h---------~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~  168 (299)
T KOG1332|consen   98 HAAH---------SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD  168 (299)
T ss_pred             hhhh---------cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence            2233         37899999987777889999999999999998864  2223456679999999999885   3    


Q ss_pred             -------CEEEEEeCCCcEEEEEccCCe--EEeeeeCCCCCCeEEEEecCCC----CeEEEEeCCCcEEEEECCCCceee
Q 014154          271 -------FNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTL----PIIASCGLDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       271 -------~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~  337 (430)
                             +.|++|+.|+.|+||+..+++  ...+|.+| ...|+.++|.|.-    .+|++++.||+|.||.........
T Consensus       169 ~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H-~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w  247 (299)
T KOG1332|consen  169 QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH-KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW  247 (299)
T ss_pred             cCcccccceeeccCCccceeeeecCCcchhhhhhhhhc-chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence                   569999999999999998764  34558888 9999999999964    479999999999999876321111


Q ss_pred             EEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       338 ~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ...+-......++.++||..|.+ +.++.|+.+.+|..+.
T Consensus       248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence            11122234677899999999999 8888999999997765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.3e-24  Score=185.84  Aligned_cols=270  Identities=13%  Similarity=0.097  Sum_probs=206.2

Q ss_pred             EeecC-CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE-ccCCeeEEEEeeecCccc
Q 014154           70 VARKN-GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSA  147 (430)
Q Consensus        70 ~g~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~  147 (430)
                      +++.| ..+.+||+++|.....+++-...       .-.++...+.         .+++++ .....+.+|.+.....  
T Consensus        12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a-------~~~sl~~l~~---------~yllsaq~~rp~l~vw~i~k~~~--   73 (476)
T KOG0646|consen   12 SSSFDPINCIVWDLRTGTSLLQYKGSYLA-------QAASLTALNN---------EYLLSAQLKRPLLHVWEILKKDQ--   73 (476)
T ss_pred             ccCCCCcceeEEecCCCceeEEecCcccc-------cchhhhhhch---------hheeeecccCccccccccCchhh--
Confidence            34444 45999999999988888762110       0011111111         133333 3334677777643321  


Q ss_pred             cCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC
Q 014154          148 ESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (430)
Q Consensus       148 ~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  227 (430)
                           .+ .+ ..-.+.+.+++-+|.|.+|+.|+..|.|++|.+.+|..+..+..|.         ..|+++.|  +.|+
T Consensus        74 -----~~-q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY---------Q~ITcL~f--s~dg  135 (476)
T KOG0646|consen   74 -----VV-QY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY---------QSITCLKF--SDDG  135 (476)
T ss_pred             -----hh-hh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc---------cceeEEEE--eCCC
Confidence                 11 11 1234789999999999999999899999999999999988887765         77999999  8999


Q ss_pred             CEEEEEeCCCcEEEEECCC--------CCcceEEEeecCCCeEEEEecCC--CCEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154          228 RKFVAGTNDHQVRLYDTSA--------QRRPVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (430)
Q Consensus       228 ~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~  297 (430)
                      .+|++|+.||.|.+|++..        .-.|+..+..|.-+|+.+...+.  ..+|++++.|.++++||+..+.++.++.
T Consensus       136 s~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~  215 (476)
T KOG0646|consen  136 SHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT  215 (476)
T ss_pred             cEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe
Confidence            9999999999999998642        23478899999999999988765  4799999999999999999999988887


Q ss_pred             CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc--e------------eeEEEeecccc-ceEEeeeccccccc-c
Q 014154          298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ--L------------LSAVFLKQHLN-EVVFDSAFADKEVA-N  361 (430)
Q Consensus       298 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~--~------------~~~~~~~~~~~-~~v~~~~~s~~g~~-~  361 (430)
                      -  ...+.+++.+|-+..++.|+.+|.|.+.++....  .            .....+.||.+ ..|++++.+-||.+ +
T Consensus       216 f--p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  216 F--PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             c--CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence            6  5789999999999999999999999998875432  0            01111456644 46899999999999 9


Q ss_pred             ccCCCCceEecCCCCC
Q 014154          362 AAADAPMLEIQNGNDT  377 (430)
Q Consensus       362 ~~~~d~~i~~~~~~~~  377 (430)
                      +|+.||.+.|||....
T Consensus       294 SGd~dg~VcvWdi~S~  309 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSK  309 (476)
T ss_pred             eeCCCCCEEEEecchH
Confidence            9999999999997654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.4e-25  Score=201.17  Aligned_cols=231  Identities=14%  Similarity=0.192  Sum_probs=185.8

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                      +.+++++..|.+.+|++....     ....+.+|+ .|...+.++.|++ ..++|++|+.||+|++||++......++..
T Consensus       101 NlIAT~s~nG~i~vWdlnk~~-----rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~  174 (839)
T KOG0269|consen  101 NLIATCSTNGVISVWDLNKSI-----RNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS  174 (839)
T ss_pred             hhheeecCCCcEEEEecCccc-----cchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc
Confidence            789999999999999997631     233556666 7889999999998 567889999999999999987766655555


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i  282 (430)
                      ..         ..|..++|++. .+..++++...|.+++||++...++...+..|.++|.|+.|+|++.+||+|+.|+.|
T Consensus       175 nS---------ESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~v  244 (839)
T KOG0269|consen  175 NS---------ESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMV  244 (839)
T ss_pred             cc---------hhhhceeeccC-CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccE
Confidence            33         67999999643 477999999999999999999888889999999999999999999999999999999


Q ss_pred             EEEEccCCeE--EeeeeCCCCCCeEEEEecCCCC-eEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154          283 ASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       283 ~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      +|||..+.+.  +.++..  ..+|.++.|-|..+ .|++++  .|-.|+|||++..-..... +..| ...++.++|...
T Consensus       245 kiWd~t~~~~~~~~tInT--iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t-~~eH-~~~vt~i~W~~~  320 (839)
T KOG0269|consen  245 KIWDMTDSRAKPKHTINT--IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT-FLEH-TDSVTGIAWDSG  320 (839)
T ss_pred             EEEeccCCCccceeEEee--cceeeeeeeccCccchhhhhhccccceEEEEeecccccccee-eecc-CccccceeccCC
Confidence            9999976654  444444  67999999999775 466665  5778999999854433332 5556 556799999873


Q ss_pred             ccc--cccCCCCceEecCC
Q 014154          358 EVA--NAAADAPMLEIQNG  374 (430)
Q Consensus       358 g~~--~~~~~d~~i~~~~~  374 (430)
                      ...  .+++.|+.+..-..
T Consensus       321 d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  321 DRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             CceeeEeecCccHHHHhhh
Confidence            333  88889998865433

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2e-24  Score=194.13  Aligned_cols=227  Identities=14%  Similarity=0.166  Sum_probs=192.3

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  204 (430)
                      .+++.+.+..+.+|+-....        ...+.+.. ...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+..+ 
T Consensus       189 n~laValg~~vylW~~~s~~--------v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-  258 (484)
T KOG0305|consen  189 NVLAVALGQSVYLWSASSGS--------VTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-  258 (484)
T ss_pred             CeEEEEecceEEEEecCCCc--------eEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC-
Confidence            45666777789999865332        34445543 789999999999999999999999999999988888877762 


Q ss_pred             CCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 014154          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (430)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i  284 (430)
                             |...|.+++|    ++..+.+|+.++.|..+|++..+.....+.+|...|..++|++|++++++|+.|+.+.|
T Consensus       259 -------h~~rvg~laW----~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~I  327 (484)
T KOG0305|consen  259 -------HASRVGSLAW----NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFI  327 (484)
T ss_pred             -------cCceeEEEec----cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEe
Confidence                   2378999999    47899999999999999999877655568899999999999999999999999999999


Q ss_pred             EEccCCeEEeeeeCCCCCCeEEEEecCC-CCeEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-
Q 014154          285 VDIRTGKLLGCFIGKCSGSIRSIARHPT-LPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-  360 (430)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-  360 (430)
                      ||.....++..+..| .+.|.+++|+|- ..+||+|+  .|+.|++||+.++..+..+.    ....|.++.|++..+- 
T Consensus       328 wd~~~~~p~~~~~~H-~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd----tgsQVcsL~Wsk~~kEi  402 (484)
T KOG0305|consen  328 WDGLSPEPKFTFTEH-TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD----TGSQVCSLIWSKKYKEL  402 (484)
T ss_pred             ccCCCccccEEEecc-ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc----cCCceeeEEEcCCCCEE
Confidence            999888899999998 999999999994 46888875  79999999999999998853    3455899999998843 


Q ss_pred             --cccCCCCceEecCCCCC
Q 014154          361 --NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       361 --~~~~~d~~i~~~~~~~~  377 (430)
                        ..|-.++.|.||.++..
T Consensus       403 ~sthG~s~n~i~lw~~ps~  421 (484)
T KOG0305|consen  403 LSTHGYSENQITLWKYPSM  421 (484)
T ss_pred             EEecCCCCCcEEEEecccc
Confidence              44667889999999764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=2.2e-23  Score=193.67  Aligned_cols=263  Identities=11%  Similarity=0.096  Sum_probs=206.1

Q ss_pred             CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC-cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (430)
Q Consensus        48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  126 (430)
                      |...  ...+++  .|+|.+|++++.||.|++|+.... +....+..        +...+.++....          +.|
T Consensus        12 ht~G--~t~i~~--d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~--------~g~~v~~ia~~s----------~~f   69 (933)
T KOG1274|consen   12 HTGG--LTLICY--DPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI--------SGELVSSIACYS----------NHF   69 (933)
T ss_pred             ccCc--eEEEEE--cCCCCEEEEecCCCceEEeecCCcccCCchhhc--------cCceeEEEeecc----------cce
Confidence            5544  556777  788999999999999999987554 22222211        223444444332          589


Q ss_pred             EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCC
Q 014154          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (430)
Q Consensus       127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  206 (430)
                      ++++.++++.++.+....     .++.+..+.    -++.+++++.+|++++.|+.|-.|++.++.+......+.+|.  
T Consensus        70 ~~~s~~~tv~~y~fps~~-----~~~iL~Rft----lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~--  138 (933)
T KOG1274|consen   70 LTGSEQNTVLRYKFPSGE-----EDTILARFT----LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHD--  138 (933)
T ss_pred             EEeeccceEEEeeCCCCC-----ccceeeeee----ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccC--
Confidence            999999999999875432     344555454    578999999999999999999999999999988888888876  


Q ss_pred             CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-------c-CCCeEEEEecCCCCEEEEEeC
Q 014154          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------R-ETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~-~~~i~~~~~sp~~~~l~~~~~  278 (430)
                             .+|.++.|  +|++++||+.+.||.|++||+.++.. ..++.+       - ...+..++|+|++..+++.+.
T Consensus       139 -------apVl~l~~--~p~~~fLAvss~dG~v~iw~~~~~~~-~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~  208 (933)
T KOG1274|consen  139 -------APVLQLSY--DPKGNFLAVSSCDGKVQIWDLQDGIL-SKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV  208 (933)
T ss_pred             -------CceeeeeE--cCCCCEEEEEecCceEEEEEcccchh-hhhcccCCccccccccceeeeeeecCCCCeEEeecc
Confidence                   78999999  89999999999999999999998542 333322       1 345678999999888888889


Q ss_pred             CCcEEEEEccCCeEEeeeeCCC-CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154          279 SGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      |+.|.+|+.........+...+ ...+..++|+|+|.|||+++.||.|.|||+++-.. +      .....|.+++|.|+
T Consensus       209 d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~------~~~~~Vc~~aw~p~  281 (933)
T KOG1274|consen  209 DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H------EFKRAVCCEAWKPN  281 (933)
T ss_pred             CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c------cccceeEEEecCCC
Confidence            9999999999999988887532 34489999999999999999999999999997222 1      12455789999998


Q ss_pred             ccc
Q 014154          358 EVA  360 (430)
Q Consensus       358 g~~  360 (430)
                      ...
T Consensus       282 ~n~  284 (933)
T KOG1274|consen  282 ANA  284 (933)
T ss_pred             CCe
Confidence            775

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=5e-24  Score=196.68  Aligned_cols=213  Identities=15%  Similarity=0.141  Sum_probs=167.1

Q ss_pred             eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (430)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  122 (430)
                      ..|.+|.+.  ++.++|  +. .++|++++.|.+|++|++....++..|.         |.+.++++.|.+.+.      
T Consensus       363 ~ef~GHt~D--ILDlSW--SK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~---------HndfVTcVaFnPvDD------  422 (712)
T KOG0283|consen  363 CEFKGHTAD--ILDLSW--SK-NNFLLSSSMDKTVRLWHPGRKECLKVFS---------HNDFVTCVAFNPVDD------  422 (712)
T ss_pred             hhhhccchh--heeccc--cc-CCeeEeccccccEEeecCCCcceeeEEe---------cCCeeEEEEecccCC------
Confidence            345567777  777888  42 3689999999999999999999998886         457899999999887      


Q ss_pred             CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                       .++++|+.||.++||+|.         +..|-.|.- -..-|++++|.|+|++.++|+.+|.+++|+....+.......
T Consensus       423 -ryFiSGSLD~KvRiWsI~---------d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  423 -RYFISGSLDGKVRLWSIS---------DKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             -CcEeecccccceEEeecC---------cCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence             899999999999999985         346777773 348899999999999999999999999999987766544333


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC--CCeEEEEecCCCCEEEEEeCCC
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE--TPIKAVAEEPDSFNIYIGNGSG  280 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~d~  280 (430)
                      +........+ ..|+.+.|.+ .+...+++.+.|..|+|||.++ ..++..++++.  ..-....|+.||++|+++++|.
T Consensus       492 ~~~~~Kk~~~-~rITG~Q~~p-~~~~~vLVTSnDSrIRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs  568 (712)
T KOG0283|consen  492 RLHNKKKKQG-KRITGLQFFP-GDPDEVLVTSNDSRIRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDS  568 (712)
T ss_pred             eeccCccccC-ceeeeeEecC-CCCCeEEEecCCCceEEEeccc-hhhhhhhcccccCCcceeeeEccCCCEEEEeecCc
Confidence            2211112222 3799999963 2334566779999999999987 44677888653  2335667899999999999999


Q ss_pred             cEEEEEccC
Q 014154          281 DLASVDIRT  289 (430)
Q Consensus       281 ~i~iwd~~~  289 (430)
                      .|++|++..
T Consensus       569 ~VYiW~~~~  577 (712)
T KOG0283|consen  569 WVYIWKNDS  577 (712)
T ss_pred             eEEEEeCCC
Confidence            999999743

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=7.4e-24  Score=187.95  Aligned_cols=299  Identities=14%  Similarity=0.117  Sum_probs=219.0

Q ss_pred             eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      +...+.+|.+.|.+++.    .|.|.+||+|+.||+|+||.+.+|+++..+..         ...|.++.|.+...    
T Consensus       392 ~~lvyrGHtg~Vr~iSv----dp~G~wlasGsdDGtvriWEi~TgRcvr~~~~---------d~~I~~vaw~P~~~----  454 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISV----DPSGEWLASGSDDGTVRIWEIATGRCVRTVQF---------DSEIRSVAWNPLSD----  454 (733)
T ss_pred             eeeeEeccCCeEEEEEe----cCCcceeeecCCCCcEEEEEeecceEEEEEee---------cceeEEEEecCCCC----
Confidence            33567889998665554    56789999999999999999999999998765         24667777666554    


Q ss_pred             ccCceEEEEccCCeeEEEEeeecCc----------cc----cCCCcceEEeee--------------cCCCceEEEEEcC
Q 014154          121 SRSRTLLTCTTKGKASMRSIEVTKV----------SA----ESSCSTVKSWNV--------------CASGTIAFSKVDI  172 (430)
Q Consensus       121 ~~~~~~~~~~~~g~~~v~~~~~~~~----------~~----~~~~~~i~~~~~--------------~~~~~i~~~~~~~  172 (430)
                         ..+++...+..+.|.+-.++..          ++    ...+..+-.|.-              .+...|..+.|+.
T Consensus       455 ---~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr  531 (733)
T KOG0650|consen  455 ---LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR  531 (733)
T ss_pred             ---ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence               3455555555555555444422          11    112334445543              3457789999999


Q ss_pred             CCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc
Q 014154          173 SEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (430)
Q Consensus       173 ~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  249 (430)
                      .|.||++...+   ..|.|+++........+....         +.|.++.|  +|...+|++++. ..|+|||+..+ .
T Consensus       532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk---------G~vq~v~F--HPs~p~lfVaTq-~~vRiYdL~kq-e  598 (733)
T KOG0650|consen  532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK---------GLVQRVKF--HPSKPYLFVATQ-RSVRIYDLSKQ-E  598 (733)
T ss_pred             CCceEEEeccCCCcceEEEEecccccccCchhhcC---------CceeEEEe--cCCCceEEEEec-cceEEEehhHH-H
Confidence            99999987653   468899987654433332222         56899999  677778887664 58999999874 3


Q ss_pred             ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW  328 (430)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iw  328 (430)
                      .+..+......|.+++.+|.|..|+.|+.|+.+..||+.-. ++.+++..| ...+++++||+.-.++++|+.||++.||
T Consensus       599 lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H-~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  599 LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLH-EKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhh-hhhhhhhhhccccceeeeecCCCcEEEE
Confidence            45555555678999999999999999999999999999855 456677776 8999999999999999999999999999


Q ss_pred             ECC-------CCceeeEEEeeccccc---eEEeeeccccccc-cccCCCCceEecC
Q 014154          329 DIK-------TRQLLSAVFLKQHLNE---VVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       329 d~~-------~~~~~~~~~~~~~~~~---~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                      .-.       +.-.+-.-.+.+|...   .|.++.|+|...+ ++++.||+|++|.
T Consensus       678 hg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  678 HGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             eeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence            642       1112221126677322   3788999999999 9999999999983

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.8e-23  Score=168.45  Aligned_cols=269  Identities=10%  Similarity=0.088  Sum_probs=200.6

Q ss_pred             eEEeecCCeEEEecCCCCc------ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           68 LAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        68 l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      |++|+....|.-+++.-..      ...++..  .-.|..|...|.++.+-.          ..+++++.|-++.||++.
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~--lF~~~aH~~sitavAVs~----------~~~aSGssDetI~IYDm~   71 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKP--LFAFSAHAGSITALAVSG----------PYVASGSSDETIHIYDMR   71 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeec--cccccccccceeEEEecc----------eeEeccCCCCcEEEEecc
Confidence            5677777777666653211      1111111  112456677887776643          478888888888888876


Q ss_pred             ecCccccCCCcceEEeeecCCCceEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEE
Q 014154          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK--FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSA  219 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  219 (430)
                      ....        +-.. +.|.+.|+++.|.+.-.  .|++|+.||.|.+|+...-..+..++.|.         ..|+.+
T Consensus        72 k~~q--------lg~l-l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~---------~~Vt~l  133 (362)
T KOG0294|consen   72 KRKQ--------LGIL-LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHK---------GQVTDL  133 (362)
T ss_pred             chhh--------hcce-eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccc---------ccccee
Confidence            4432        1111 24678999999998654  89999999999999999999999999886         669999


Q ss_pred             EEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC
Q 014154          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (430)
Q Consensus       220 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  299 (430)
                      +.  +|.+.+.++.+.|+.+++||+-.++. -..++.. ...+.+.|+|.|.+++.+..+ .|-+|.+.+..+...+.. 
T Consensus       134 si--HPS~KLALsVg~D~~lr~WNLV~Gr~-a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~-  207 (362)
T KOG0294|consen  134 SI--HPSGKLALSVGGDQVLRTWNLVRGRV-AFVLNLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN-  207 (362)
T ss_pred             Ee--cCCCceEEEEcCCceeeeehhhcCcc-ceeeccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc-
Confidence            99  89999999999999999999998774 2233322 234559999999988888765 489999988877666654 


Q ss_pred             CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeec--cccccc-cccCCCCceEecCCCC
Q 014154          300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF--ADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       300 ~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                       ...+.++.|. ++..|++|+.|+.|++||..+..+...  +.+| ...|-++.+  .|++.+ ++++.||.|++|+.+.
T Consensus       208 -~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~--~~AH-~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  208 -PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE--FLAH-ENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             -cccceeeeec-CCceEEEecCCceEEEeccCCCcccee--eecc-hhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence             3567777775 556899999999999999998777776  6678 455677763  456677 9999999999999876


Q ss_pred             C
Q 014154          377 T  377 (430)
Q Consensus       377 ~  377 (430)
                      .
T Consensus       283 ~  283 (362)
T KOG0294|consen  283 E  283 (362)
T ss_pred             c
Confidence            4

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.92  E-value=2.7e-24  Score=182.56  Aligned_cols=224  Identities=12%  Similarity=0.127  Sum_probs=180.8

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      |...+++++.|+.+++|++...     ++..++.+|.+.++.+.|....+    .+++|+.|.+|++||+....+..++-
T Consensus       230 ~~~~~iAas~d~~~r~Wnvd~~-----r~~~TLsGHtdkVt~ak~~~~~~----~vVsgs~DRtiK~WDl~k~~C~kt~l  300 (459)
T KOG0288|consen  230 DNKHVIAASNDKNLRLWNVDSL-----RLRHTLSGHTDKVTAAKFKLSHS----RVVSGSADRTIKLWDLQKAYCSKTVL  300 (459)
T ss_pred             CCceEEeecCCCceeeeeccch-----hhhhhhcccccceeeehhhcccc----ceeeccccchhhhhhhhhhheecccc
Confidence            4477899999999999999998     88899999999988777765333    38999999999999997755444321


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      .                                   +                                 ..+..+..+ 
T Consensus       301 ~-----------------------------------~---------------------------------S~cnDI~~~-  311 (459)
T KOG0288|consen  301 P-----------------------------------G---------------------------------SQCNDIVCS-  311 (459)
T ss_pred             c-----------------------------------c---------------------------------ccccceEec-
Confidence            1                                   0                                 001111111 


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  252 (430)
                       ...+++|-.|++|++||.++..+..+...+          +.|+++..  ++++..|++++.|.++.+.|+++.. ...
T Consensus       312 -~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----------g~vtSl~l--s~~g~~lLsssRDdtl~viDlRt~e-I~~  377 (459)
T KOG0288|consen  312 -ISDVISGHFDKKVRFWDIRSADKTRSVPLG----------GRVTSLDL--SMDGLELLSSSRDDTLKVIDLRTKE-IRQ  377 (459)
T ss_pred             -ceeeeecccccceEEEeccCCceeeEeecC----------cceeeEee--ccCCeEEeeecCCCceeeeeccccc-EEE
Confidence             345677888999999999998888887765          56999999  8899999999999999999999854 355


Q ss_pred             EEeec----CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCC-CeEEEEecCCCCeEEEEeCCCcEEE
Q 014154          253 SFDFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG-SIRSIARHPTLPIIASCGLDSYLRF  327 (430)
Q Consensus       253 ~~~~~----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~s~~~dg~i~i  327 (430)
                      .+...    ....+.+.|||++.|+++|+.||.|+||++.++++...+...+.. .|+++.|+|.|..|++++.++.+.+
T Consensus       378 ~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l  457 (459)
T KOG0288|consen  378 TFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL  457 (459)
T ss_pred             EeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence            55432    234788999999999999999999999999999998888765233 6999999999999999999999999


Q ss_pred             E
Q 014154          328 W  328 (430)
Q Consensus       328 w  328 (430)
                      |
T Consensus       458 W  458 (459)
T KOG0288|consen  458 W  458 (459)
T ss_pred             c
Confidence            9

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=4.9e-24  Score=185.35  Aligned_cols=274  Identities=13%  Similarity=0.117  Sum_probs=209.5

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      |.-+++||+. |.|+|||+...  +....+..+.-....-++-....  .|||+.|++|+.-.++.|||+....+....+
T Consensus       430 ~trhVyTgGk-gcVKVWdis~p--g~k~PvsqLdcl~rdnyiRSckL--~pdgrtLivGGeastlsiWDLAapTprikae  504 (705)
T KOG0639|consen  430 PTRHVYTGGK-GCVKVWDISQP--GNKSPVSQLDCLNRDNYIRSCKL--LPDGRTLIVGGEASTLSIWDLAAPTPRIKAE  504 (705)
T ss_pred             CcceeEecCC-CeEEEeeccCC--CCCCccccccccCcccceeeeEe--cCCCceEEeccccceeeeeeccCCCcchhhh
Confidence            3456777765 78999999874  22222333433333344555555  8899999999999999999997554332222


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      .- .     ..-....+.+.+..        ..+++|..+|.+.||++....        .|+.+. .|...+.||.+++
T Consensus       505 lt-s-----sapaCyALa~spDa--------kvcFsccsdGnI~vwDLhnq~--------~Vrqfq-GhtDGascIdis~  561 (705)
T KOG0639|consen  505 LT-S-----SAPACYALAISPDA--------KVCFSCCSDGNIAVWDLHNQT--------LVRQFQ-GHTDGASCIDISK  561 (705)
T ss_pred             cC-C-----cchhhhhhhcCCcc--------ceeeeeccCCcEEEEEcccce--------eeeccc-CCCCCceeEEecC
Confidence            10 0     00112223333332        488999999999999987443        555555 6778899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  252 (430)
                      +|..|.+|+.|++|+.||+++++.+....-.          +.|.++.+  +|.+..|++|-.++.+.|.......  ..
T Consensus       562 dGtklWTGGlDntvRcWDlregrqlqqhdF~----------SQIfSLg~--cP~~dWlavGMens~vevlh~skp~--ky  627 (705)
T KOG0639|consen  562 DGTKLWTGGLDNTVRCWDLREGRQLQQHDFS----------SQIFSLGY--CPTGDWLAVGMENSNVEVLHTSKPE--KY  627 (705)
T ss_pred             CCceeecCCCccceeehhhhhhhhhhhhhhh----------hhheeccc--CCCccceeeecccCcEEEEecCCcc--ce
Confidence            9999999999999999999988776543321          66888888  8999999999999999998887644  46


Q ss_pred             EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      .+..|++-|.++.|.+.|+++++.+.|+.+..|...-|..+...+.  .+.|.+...|.|.++|+||+.|..-.||.+
T Consensus       628 qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  628 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            6777999999999999999999999999999999988888877765  679999999999999999999988888764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.1e-23  Score=173.19  Aligned_cols=277  Identities=14%  Similarity=0.205  Sum_probs=201.0

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce-----
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA-----   90 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~-----   90 (430)
                      .+-|++.|.+.+||.++.+     +++.++.+|.+.|.++.|    ++.+.++++++.|++..||...-.-.+..     
T Consensus       162 i~gtASADhTA~iWs~Esg-----~CL~~Y~GH~GSVNsikf----h~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~  232 (481)
T KOG0300|consen  162 ICGTASADHTARIWSLESG-----ACLATYTGHTGSVNSIKF----HNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS  232 (481)
T ss_pred             ceeecccccceeEEeeccc-----cceeeecccccceeeEEe----ccccceEEEccCCcchHHHHHhhcCcCCCCCCCC
Confidence            4578999999999999999     899999999999877666    56788999999999999997321100000     


Q ss_pred             -------eec---cCCC-----------------CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeec
Q 014154           91 -------ISN---AGDS-----------------GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (430)
Q Consensus        91 -------~~~---~~~~-----------------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~  143 (430)
                             .+.   +.+.                 .+.+|...+.+..|...        ...+++++-|.+..+|+++.+
T Consensus       233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g--------g~Q~vTaSWDRTAnlwDVEtg  304 (481)
T KOG0300|consen  233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG--------GQQMVTASWDRTANLWDVETG  304 (481)
T ss_pred             CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC--------cceeeeeeccccceeeeeccC
Confidence                   000   0000                 00011111211112211        135666666667777776654


Q ss_pred             CccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154          144 KVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (430)
Q Consensus       144 ~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (430)
                      .        .+.+.. .|...++.++-+|..+++++.+.|.+.++||++.. ..+..+++|.         ..|+++.| 
T Consensus       305 e--------~v~~Lt-GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt---------dtVTS~vF-  365 (481)
T KOG0300|consen  305 E--------VVNILT-GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT---------DTVTSVVF-  365 (481)
T ss_pred             c--------eecccc-CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc---------cceeEEEE-
Confidence            3        333332 55677788888999999999999999999999743 3345566665         78999999 


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee-----e
Q 014154          223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-----I  297 (430)
Q Consensus       223 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~  297 (430)
                       . .+..+++|+.|.+|++||+++.+.++.++.. .++++.++.+..+..|+.-..+..|++||+...+ +..+     +
T Consensus       366 -~-~dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsRq  441 (481)
T KOG0300|consen  366 -N-TDDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR-LARLPRTSRQ  441 (481)
T ss_pred             -e-cCCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCc-cccCCccccc
Confidence             3 4568999999999999999999988888875 4789999999888899999888999999995444 3333     3


Q ss_pred             CCCCCCeEEEEecCCCC--eEEEEeCCCcEEEEECCCC
Q 014154          298 GKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       298 ~~~~~~v~~i~~~~~~~--~l~s~~~dg~i~iwd~~~~  333 (430)
                      +| ..-|+|++|..+..  -|++++.|..+.-|.+...
T Consensus       442 gH-rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  442 GH-RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             cc-ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            66 78899999986543  4889999999999998653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=2.5e-21  Score=173.55  Aligned_cols=268  Identities=11%  Similarity=0.084  Sum_probs=189.3

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE-EEEccCCeeEEEEeeecC
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTK  144 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~v~~~~~~~  144 (430)
                      +++++++.|+.|.+||+.+++.+..+...         ..+..+.+.+..        ..+ +++..++.+.+|++....
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~---------~~~~~l~~~~dg--------~~l~~~~~~~~~v~~~d~~~~~   64 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVG---------QRPRGITLSKDG--------KLLYVCASDSDTIQVIDLATGE   64 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECC---------CCCCceEECCCC--------CEEEEEECCCCeEEEEECCCCc
Confidence            46889999999999999988877776542         122334443322        234 566778899999865322


Q ss_pred             ccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee
Q 014154          145 VSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (430)
Q Consensus       145 ~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (430)
                              .+..+.  ....+..++++|+++.++++ ..++.|++||+.+.+.+..+...          ..+.+++|  
T Consensus        65 --------~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~----------~~~~~~~~--  122 (300)
T TIGR03866        65 --------VIGTLP--SGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG----------VEPEGMAV--  122 (300)
T ss_pred             --------EEEecc--CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC----------CCcceEEE--
Confidence                    222222  23345678999999977655 56899999999987776665432          23567888  


Q ss_pred             cCCCCEEEEEeCCC-cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCC-
Q 014154          224 IDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKC-  300 (430)
Q Consensus       224 ~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~-  300 (430)
                      +|++.+++++..++ .+.+||..++.. ...+. ....+.+++|+|++++|++++ .++.|++||+++++.+..+..+. 
T Consensus       123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~  200 (300)
T TIGR03866       123 SPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP  200 (300)
T ss_pred             CCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc
Confidence            89999999988775 467789887543 33332 234567899999999886554 68999999999998876664220 


Q ss_pred             -----CCCeEEEEecCCCCeEEE-EeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-ccc-CCCCceEec
Q 014154          301 -----SGSIRSIARHPTLPIIAS-CGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA-ADAPMLEIQ  372 (430)
Q Consensus       301 -----~~~v~~i~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~-~~d~~i~~~  372 (430)
                           ......+.|+|++++++. .+.++.|.+||+++++.+..+. .   ...+.+++|+|+|.+ +++ ..++.|.+|
T Consensus       201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~  276 (300)
T TIGR03866       201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-V---GQRVWQLAFTPDEKYLLTTNGVSNDVSVI  276 (300)
T ss_pred             ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-e---CCCcceEEECCCCCEEEEEcCCCCeEEEE
Confidence                 112356889999998554 3556789999999888776532 1   234689999999998 444 568999999


Q ss_pred             CCCCCc
Q 014154          373 NGNDTQ  378 (430)
Q Consensus       373 ~~~~~~  378 (430)
                      +.....
T Consensus       277 d~~~~~  282 (300)
T TIGR03866       277 DVAALK  282 (300)
T ss_pred             ECCCCc
Confidence            988744

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=3.9e-22  Score=163.09  Aligned_cols=261  Identities=12%  Similarity=0.122  Sum_probs=190.4

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++++-||+||+|+++....-.+   .....|.++  ++..+|  +.||..+++|+.|+.+++||+.+++. ..+.. 
T Consensus        41 ~~~~A~SWD~tVR~wevq~~g~~~~---ka~~~~~~P--vL~v~W--sddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~-  111 (347)
T KOG0647|consen   41 NLLAAGSWDGTVRIWEVQNSGQLVP---KAQQSHDGP--VLDVCW--SDDGSKVFSGGCDKQAKLWDLASGQV-SQVAA-  111 (347)
T ss_pred             ceEEecccCCceEEEEEecCCcccc---hhhhccCCC--eEEEEE--ccCCceEEeeccCCceEEEEccCCCe-eeeee-
Confidence            4566899999999999998311222   234457777  666777  66788999999999999999999963 34333 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                             |..++..++|......      ..+++++-|.+++.|+.....        .+....+  ...+.++..  ..
T Consensus       112 -------Hd~pvkt~~wv~~~~~------~cl~TGSWDKTlKfWD~R~~~--------pv~t~~L--PeRvYa~Dv--~~  166 (347)
T KOG0647|consen  112 -------HDAPVKTCHWVPGMNY------QCLVTGSWDKTLKFWDTRSSN--------PVATLQL--PERVYAADV--LY  166 (347)
T ss_pred             -------cccceeEEEEecCCCc------ceeEecccccceeecccCCCC--------eeeeeec--cceeeehhc--cC
Confidence                   4568888888875431      367888888888888765332        2222222  234444333  45


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-cceEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMS  253 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~  253 (430)
                      .+++++..+..|.+|+++.+...+......       ..-.++|++..  ++....+.|+-.|.+.+..+..+. ..-..
T Consensus       167 pm~vVata~r~i~vynL~n~~te~k~~~Sp-------Lk~Q~R~va~f--~d~~~~alGsiEGrv~iq~id~~~~~~nFt  237 (347)
T KOG0647|consen  167 PMAVVATAERHIAVYNLENPPTEFKRIESP-------LKWQTRCVACF--QDKDGFALGSIEGRVAIQYIDDPNPKDNFT  237 (347)
T ss_pred             ceeEEEecCCcEEEEEcCCCcchhhhhcCc-------ccceeeEEEEE--ecCCceEeeeecceEEEEecCCCCccCcee
Confidence            688889999999999997755433222211       11458888884  566667999999999999888742 22456


Q ss_pred             EeecCC---------CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          254 FDFRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       254 ~~~~~~---------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      |+.|..         .|.+|+|+|.-..|++++.||+..+||-.....+...+.| ..+|++..|+.+|.+++-+
T Consensus       238 FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~-~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  238 FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH-PQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC-CCccceeEecCCCCEEEEE
Confidence            667752         5778999999999999999999999999888888888887 8999999999999988766

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=6.4e-21  Score=149.78  Aligned_cols=262  Identities=15%  Similarity=0.173  Sum_probs=188.4

Q ss_pred             ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      +-..|.+.+++++  |  +|+|++||+|+.|.+|++.-.+.....  ..+ ....|..+++.|..+.+.+.....     
T Consensus        84 r~khhkgsiyc~~--w--s~~geliatgsndk~ik~l~fn~dt~~--~~g-~dle~nmhdgtirdl~fld~~~s~-----  151 (350)
T KOG0641|consen   84 RNKHHKGSIYCTA--W--SPCGELIATGSNDKTIKVLPFNADTCN--ATG-HDLEFNMHDGTIRDLAFLDDPESG-----  151 (350)
T ss_pred             eccccCccEEEEE--e--cCccCeEEecCCCceEEEEeccccccc--ccC-cceeeeecCCceeeeEEecCCCcC-----
Confidence            3345777765554  4  778999999999999999876533321  111 123455677889999998876522     


Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      +.++.....|...|+-..-..      ......+. .|.+.|.++ ++-++-.+++|+.|.+|++||++-..++..+...
T Consensus       152 ~~il~s~gagdc~iy~tdc~~------g~~~~a~s-ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~  223 (350)
T KOG0641|consen  152 GAILASAGAGDCKIYITDCGR------GQGFHALS-GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND  223 (350)
T ss_pred             ceEEEecCCCcceEEEeecCC------CCcceeec-CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCc
Confidence            455555555555554332111      11222232 344555544 2226789999999999999999887777766543


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~  283 (430)
                      ...  +....+.|.+++.  .|.|++|++|-.|....+||++.++ +++.+..|...|.|+.|+|...|+++++.|..|+
T Consensus       224 ~~~--~glessavaav~v--dpsgrll~sg~~dssc~lydirg~r-~iq~f~phsadir~vrfsp~a~yllt~syd~~ik  298 (350)
T KOG0641|consen  224 FHD--GGLESSAVAAVAV--DPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIK  298 (350)
T ss_pred             ccC--CCcccceeEEEEE--CCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCccceeEEEeCCCceEEEEecccceEE
Confidence            211  1112356888888  8999999999999999999999855 7999999999999999999999999999999999


Q ss_pred             EEEccCC---eE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          284 SVDIRTG---KL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       284 iwd~~~~---~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      +-|++..   ++ +.....| ...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus       299 ltdlqgdla~el~~~vv~eh-kdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  299 LTDLQGDLAHELPIMVVAEH-KDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EeecccchhhcCceEEEEec-cCceEEEEecCccceeeeccCcceEEEeccC
Confidence            9998531   22 3333445 7888889999999889999999999999764

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=9.2e-22  Score=161.46  Aligned_cols=256  Identities=13%  Similarity=0.118  Sum_probs=192.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|+.++-||++++|++...     .+...+. |..+  ++..+|.+   ...+++|+.||.|+.+|+.++.....-   
T Consensus        26 ~~LLvssWDgslrlYdv~~~-----~l~~~~~-~~~p--lL~c~F~d---~~~~~~G~~dg~vr~~Dln~~~~~~ig---   91 (323)
T KOG1036|consen   26 SDLLVSSWDGSLRLYDVPAN-----SLKLKFK-HGAP--LLDCAFAD---ESTIVTGGLDGQVRRYDLNTGNEDQIG---   91 (323)
T ss_pred             CcEEEEeccCcEEEEeccch-----hhhhhee-cCCc--eeeeeccC---CceEEEeccCceEEEEEecCCcceeec---
Confidence            56888889999999999985     4444444 6677  56666633   245999999999999999877643221   


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                            .|..++.++......        +.+++++-|+++.+|+.....          .+........|.++..  .+
T Consensus        92 ------th~~~i~ci~~~~~~--------~~vIsgsWD~~ik~wD~R~~~----------~~~~~d~~kkVy~~~v--~g  145 (323)
T KOG1036|consen   92 ------THDEGIRCIEYSYEV--------GCVISGSWDKTIKFWDPRNKV----------VVGTFDQGKKVYCMDV--SG  145 (323)
T ss_pred             ------cCCCceEEEEeeccC--------CeEEEcccCccEEEEeccccc----------cccccccCceEEEEec--cC
Confidence                  245677777776443        599999999999999976321          1122233456777666  58


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC---cce
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---RPV  251 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~  251 (430)
                      +.|++|+.+..+.+||+++............       .-.+.|+++  -|++.=+++++-||.|.+=.+....   ...
T Consensus       146 ~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------kyqtR~v~~--~pn~eGy~~sSieGRVavE~~d~s~~~~skk  216 (323)
T KOG1036|consen  146 NRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------KYQTRCVAL--VPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK  216 (323)
T ss_pred             CEEEEeecCceEEEEEcccccchhhhccccc-------eeEEEEEEE--ecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence            8999999999999999987665443222211       146889999  4577778888999999886666531   224


Q ss_pred             EEEeecC---------CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154          252 MSFDFRE---------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       252 ~~~~~~~---------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      ..|+.|.         .+|.+|+|+|-...|++|+.||.|.+||+.+.+.+..+... ...|..++|+.+|..||+++
T Consensus       217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  217 YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             eeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEe
Confidence            5666664         37999999999999999999999999999999999999887 77899999999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-22  Score=174.46  Aligned_cols=296  Identities=10%  Similarity=0.092  Sum_probs=213.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEe--ecCCeEEEecCCCCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g--~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      +++++++  ..+++||+...     .....+-.|..+..+..++|...   ++|+++  +.|..|++|.- .|+ +.++.
T Consensus         5 l~~aS~g--d~~kl~D~s~~-----~~~~~~~~~t~~pg~~s~~w~~~---n~lvvas~~gdk~~~~~~K-~g~-~~~Vp   72 (673)
T KOG4378|consen    5 LHVASTG--DKTKLSDFSDL-----ETKSEYVHQTAEPGDFSFNWQRR---NFLVVASMAGDKVMRIKEK-DGK-TPEVP   72 (673)
T ss_pred             eeeeccC--CceEEeecccc-----cCccccccCCCCCcceeeecccc---ceEEEeecCCceeEEEecc-cCC-CCccc
Confidence            4444444  58999999886     34444555555555777887333   335554  46778999963 344 33332


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      .+....    .+.-.++......        -++++++.++.+.||++...         .+..+-..|...|+++.++.
T Consensus        73 ~~~k~~----gd~~~Cv~~~s~S--------~y~~sgG~~~~Vkiwdl~~k---------l~hr~lkdh~stvt~v~YN~  131 (673)
T KOG4378|consen   73 RVRKLT----GDNAFCVACASQS--------LYEISGGQSGCVKIWDLRAK---------LIHRFLKDHQSTVTYVDYNN  131 (673)
T ss_pred             eeeccc----cchHHHHhhhhcc--------eeeeccCcCceeeehhhHHH---------HHhhhccCCcceeEEEEecC
Confidence            211110    0111112222211        37888999999999998622         34444456788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcce
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~  251 (430)
                      ...+||+++..|.|.|..+.++.....+....+        ..|.-+.|  ++.. .+|.+++.+|.|.+||........
T Consensus       132 ~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg--------qsvRll~y--s~skr~lL~~asd~G~VtlwDv~g~sp~~  201 (673)
T KOG4378|consen  132 TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG--------QSVRLLRY--SPSKRFLLSIASDKGAVTLWDVQGMSPIF  201 (673)
T ss_pred             CcceeEEeccCCcEEEEecccCccccceecCCC--------CeEEEeec--ccccceeeEeeccCCeEEEEeccCCCccc
Confidence            999999999999999999998877666654432        45678888  4544 467789999999999999765444


Q ss_pred             EEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          252 MSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      .....|..+...|+|+|.. .+|++.+.|..|.+||.+..+....+..  ..+...++|+++|.+|+.|...|.|..||+
T Consensus       202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee--cCCcceeeecCCceEEEeecCCceEEEEec
Confidence            5566799999999999966 6778889999999999998877777765  568999999999999999999999999999


Q ss_pred             CCC-ceeeEEEeeccccceEEeeeccccc
Q 014154          331 KTR-QLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       331 ~~~-~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      +.. .++.+  +..| ...|++++|-|.-
T Consensus       280 R~~k~Pv~v--~sah-~~sVt~vafq~s~  305 (673)
T KOG4378|consen  280 RSTKAPVAV--RSAH-DASVTRVAFQPSP  305 (673)
T ss_pred             ccCCCCceE--eeec-ccceeEEEeeecc
Confidence            864 45555  5667 4558999998764

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=1.6e-21  Score=174.49  Aligned_cols=300  Identities=13%  Similarity=0.185  Sum_probs=205.7

Q ss_pred             CCCCC--cceeeecCCCceEEEEccCCCCCcc-eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc
Q 014154           10 PGCPP--LRALTFDSLGLIKVIEARGEHGGVP-KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD   86 (430)
Q Consensus        10 ~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~   86 (430)
                      +.||.  =.|+.+++||.|.++|......... ..+..+..|...  ++.+.|  -|-...|++++.|.++++||+.+++
T Consensus        58 s~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nA--ifDl~w--apge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   58 SAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNA--IFDLKW--APGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccce--eEeecc--CCCceeEEEccCCceeeeeeeccce
Confidence            34555  3578899999999999887421111 113456668777  666666  6645578889999999999999888


Q ss_pred             ccce--eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc---------cccCCC----
Q 014154           87 LRVA--ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------SAESSC----  151 (430)
Q Consensus        87 ~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---------~~~~~~----  151 (430)
                      +...  +.+        |...+.++++...+.       ..|++|+.||.+.||++.....         +++...    
T Consensus       134 l~G~~~~~G--------H~~SvkS~cf~~~n~-------~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt  198 (720)
T KOG0321|consen  134 LVGGRLNLG--------HTGSVKSECFMPTNP-------AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT  198 (720)
T ss_pred             eecceeecc--------cccccchhhhccCCC-------cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence            7665  333        445666677777666       7999999999999999876542         111111    


Q ss_pred             ------cceEEeeecCCCceEE---EEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcC--CcceeEE
Q 014154          152 ------STVKSWNVCASGTIAF---SKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFT--PTWFTSA  219 (430)
Q Consensus       152 ------~~i~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~  219 (430)
                            ..++-|. .+...|..   +-+..|...||+++. |+.|+|||++...............+....  ...+.++
T Consensus       199 pskp~~kr~~k~k-A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL  277 (720)
T KOG0321|consen  199 PSKPLKKRIRKWK-AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL  277 (720)
T ss_pred             CCchhhccccccc-cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence                  1233333 22334444   444558888998887 999999999876555443332222221110  1234555


Q ss_pred             EEeecCCCCEEEEEeCCCcEEEEECCCCC-cceEEEeecCC---CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-Ee
Q 014154          220 AFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRET---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LG  294 (430)
Q Consensus       220 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~  294 (430)
                      ..  ...|.+|+..+.|+.|++|++.... .|+..+.++..   .+. -..+|++.+|++|+.|...++|.+.+.+. ..
T Consensus       278 ~l--DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~  354 (720)
T KOG0321|consen  278 IL--DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA  354 (720)
T ss_pred             Ee--cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccCChh
Confidence            55  5667877777779999999998633 34555555421   122 23589999999999999999999987765 55


Q ss_pred             eeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCC
Q 014154          295 CFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       295 ~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~  333 (430)
                      .+.+| ...|++++|.|.. .-++++++|..++||++..+
T Consensus       355 ~l~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  355 LLLGH-TREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             hhhCc-ceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            67787 8999999999854 34778899999999999654

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=3.1e-23  Score=189.20  Aligned_cols=237  Identities=12%  Similarity=0.162  Sum_probs=184.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..++|++..|.|.+||+...  ...+++..|.+|...+..+.|...   .-.+|++|+.||+|++||++..+-..++.+ 
T Consensus       101 NlIAT~s~nG~i~vWdlnk~--~rnk~l~~f~EH~Rs~~~ldfh~t---ep~iliSGSQDg~vK~~DlR~~~S~~t~~~-  174 (839)
T KOG0269|consen  101 NLIATCSTNGVISVWDLNKS--IRNKLLTVFNEHERSANKLDFHST---EPNILISGSQDGTVKCWDLRSKKSKSTFRS-  174 (839)
T ss_pred             hhheeecCCCcEEEEecCcc--ccchhhhHhhhhccceeeeeeccC---CccEEEecCCCceEEEEeeecccccccccc-
Confidence            56889999999999999882  222677789999999777776542   226899999999999999987776665544 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                             ....+..+.|.+...       ..++++..+|.+..|++.+...       ..+.+. +|.++|.|+.|+|++
T Consensus       175 -------nSESiRDV~fsp~~~-------~~F~s~~dsG~lqlWDlRqp~r-------~~~k~~-AH~GpV~c~nwhPnr  232 (839)
T KOG0269|consen  175 -------NSESIRDVKFSPGYG-------NKFASIHDSGYLQLWDLRQPDR-------CEKKLT-AHNGPVLCLNWHPNR  232 (839)
T ss_pred             -------cchhhhceeeccCCC-------ceEEEecCCceEEEeeccCchh-------HHHHhh-cccCceEEEeecCCC
Confidence                   234666677776655       6899999999999999986543       333333 689999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe--CCCcEEEEECCCCCcc
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRP  250 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~  250 (430)
                      .+||+|+.|++|+|||+.+.+.  +.++..          ..+|.+++|. +.....|++++  .|-.|+|||++....|
T Consensus       233 ~~lATGGRDK~vkiWd~t~~~~~~~~tInT----------iapv~rVkWR-P~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  233 EWLATGGRDKMVKIWDMTDSRAKPKHTINT----------IAPVGRVKWR-PARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             ceeeecCCCccEEEEeccCCCccceeEEee----------cceeeeeeec-cCccchhhhhhccccceEEEEeecccccc
Confidence            9999999999999999976443  222222          2679999995 22345677776  4778999999998888


Q ss_pred             eEEEeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCC
Q 014154          251 VMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTG  290 (430)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~  290 (430)
                      ..++..|...++.++|.. |...+.+++.|++|..-.+++.
T Consensus       302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            999999999999999954 5578899999998876655544

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=6.8e-22  Score=176.87  Aligned_cols=307  Identities=13%  Similarity=0.128  Sum_probs=209.1

Q ss_pred             CCCCcceeeeeecCCCCC-ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154           48 PHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (430)
Q Consensus        48 ~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  126 (430)
                      +..++..++.+|...|.- ..||.+..||.|.++|.......  ++.-.-..+..|.+.|..+.|.+.+        ..|
T Consensus        46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr--~ee~~lk~~~aH~nAifDl~wapge--------~~l  115 (720)
T KOG0321|consen   46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR--LEERQLKKPLAHKNAIFDLKWAPGE--------SLL  115 (720)
T ss_pred             CCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcc--hhhhhhcccccccceeEeeccCCCc--------eeE
Confidence            444444544555444443 46888999999999998644322  1111112244677788888888844        489


Q ss_pred             EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee--e-----E
Q 014154          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK--I-----W  198 (430)
Q Consensus       127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~--~-----~  198 (430)
                      ++++.|.++++|++..+..     +|. + ..+.|...|.+++|.| +...|++|+.||.|.|||++-...  .     .
T Consensus       116 VsasGDsT~r~Wdvk~s~l-----~G~-~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~  188 (720)
T KOG0321|consen  116 VSASGDSTIRPWDVKTSRL-----VGG-R-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNR  188 (720)
T ss_pred             EEccCCceeeeeeecccee-----ecc-e-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhh
Confidence            9999999999999986542     111 1 3458889999999999 567888999999999999863220  0     0


Q ss_pred             eeCCCCC---C--------CCCCcC----CcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcc-----eE--EEe
Q 014154          199 TAKPPPK---N--------SLGIFT----PTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRP-----VM--SFD  255 (430)
Q Consensus       199 ~~~~~~~---~--------~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~-----~~--~~~  255 (430)
                      ....+..   +        .....+    ...|+.+.|   .|...||+++. |+.|+|||++.....     ..  .+.
T Consensus       189 ~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f---kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~  265 (720)
T KOG0321|consen  189 IYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF---KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYP  265 (720)
T ss_pred             hhccccCCCCCCchhhccccccccccCceeeeeEEEEE---eccceeeeccCCCcceEEEeecccccccccCCCcccCcc
Confidence            0000110   0        000011    133666666   57889999888 999999999974431     11  122


Q ss_pred             ec---CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe--EEeeeeCCCCCCeE-EEEecCCCCeEEEEeCCCcEEEEE
Q 014154          256 FR---ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIR-SIARHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       256 ~~---~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~dg~i~iwd  329 (430)
                      .|   .-.+.++.....|.+|++.+.|+.|++||+....  ++..+.++....++ .-..+|++.+|++|+.|...++|.
T Consensus       266 t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~  345 (720)
T KOG0321|consen  266 THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV  345 (720)
T ss_pred             CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence            23   2356777777788999999999999999998643  45555554222222 234689999999999999999999


Q ss_pred             CCCCceeeEEEeeccccceEEeeeccccc--cccccCCCCceEecCCCC
Q 014154          330 IKTRQLLSAVFLKQHLNEVVFDSAFADKE--VANAAADAPMLEIQNGND  376 (430)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~~~~~~d~~i~~~~~~~  376 (430)
                      +.+.+.-..+ +.|| .-.|+.++|.|..  ..+++++|..+++|+...
T Consensus       346 vs~~e~~~~~-l~Gh-t~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  346 VSSPEAPPAL-LLGH-TREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             ecCccCChhh-hhCc-ceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence            9886655443 6678 4456999998864  458889999999999854

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=9.7e-22  Score=160.24  Aligned_cols=221  Identities=18%  Similarity=0.252  Sum_probs=166.4

Q ss_pred             ecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          159 VCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       159 ~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      -.|++.|.++.+.+ .++++++|+.||.|.+||++....      +......-.....-.|.-.|..+.|. +-|...+.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy-P~DtGmFt  118 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY-PIDTGMFT  118 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe-eecCceee
Confidence            35789999999988 789999999999999999975321      11100000000011233568888886 34566889


Q ss_pred             EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC---CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEE
Q 014154          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA  308 (430)
Q Consensus       232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~  308 (430)
                      +++.|.++++||.++.+. ...|+. ++.|.+-++||-.   -++++|..+-.|++.|+.+|...+.+.+| ...|.++.
T Consensus       119 ssSFDhtlKVWDtnTlQ~-a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGH-r~~vlaV~  195 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQE-AVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGH-RDGVLAVE  195 (397)
T ss_pred             cccccceEEEeeccccee-eEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccc-cCceEEEE
Confidence            999999999999998553 445543 4678888888854   47788888999999999999999999999 99999999


Q ss_pred             ecCCCCe-EEEEeCCCcEEEEECCCC-ceeeEEE------------eeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154          309 RHPTLPI-IASCGLDSYLRFWDIKTR-QLLSAVF------------LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       309 ~~~~~~~-l~s~~~dg~i~iwd~~~~-~~~~~~~------------~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                      |+|...+ |++|+.||.|++||++.. .+...+.            -..| .+.++.++|+.+|.+ ++.+.|..+++|+
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah-~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAH-YGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccc-cceeeeeeecccchhhhhccCccceEEee
Confidence            9998865 689999999999999754 3333311            1123 455799999999999 9999999999999


Q ss_pred             CCCCccccccc
Q 014154          374 GNDTQEDATET  384 (430)
Q Consensus       374 ~~~~~~~~~~~  384 (430)
                      .........+.
T Consensus       275 ~~~G~ntl~~~  285 (397)
T KOG4283|consen  275 MESGRNTLREF  285 (397)
T ss_pred             cccCccccccc
Confidence            87755444433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.5e-21  Score=168.34  Aligned_cols=285  Identities=12%  Similarity=0.145  Sum_probs=203.5

Q ss_pred             cCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCc-eeEEeecCCeEEEecCC
Q 014154            7 LECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPL   83 (430)
Q Consensus         7 ~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~~   83 (430)
                      ++|....|  -.|++|+.||+++||.+.+..   -..++.+.-...++.  ...|  .|+|. .+++++....+..||+.
T Consensus       216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~---N~~lqS~~l~~fPi~--~a~f--~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV---NPKLQSIHLEKFPIQ--KAEF--APNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             ceEEEecCCCceEEEecCCCcEEEEEecCcc---ChhheeeeeccCccc--eeee--cCCCceEEEecccceEEEEeecc
Confidence            34444444  357899999999999998741   123444433445533  4444  66777 88999999999999998


Q ss_pred             CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154           84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG  163 (430)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~  163 (430)
                      +.+....-...      +.  .-..+..+......     ..++..+..|.+.+.......        .|..+.  -.+
T Consensus       289 ~ak~~k~~~~~------g~--e~~~~e~FeVShd~-----~fia~~G~~G~I~lLhakT~e--------li~s~K--ieG  345 (514)
T KOG2055|consen  289 TAKVTKLKPPY------GV--EEKSMERFEVSHDS-----NFIAIAGNNGHIHLLHAKTKE--------LITSFK--IEG  345 (514)
T ss_pred             ccccccccCCC------Cc--ccchhheeEecCCC-----CeEEEcccCceEEeehhhhhh--------hhheee--ecc
Confidence            87743321110      01  11123333322211     477777777877776543322        233333  358


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      .|..++|+.+++.|++++.+|.|++||++...+++.+...          +.|....+.+++++.+||+|+..|.|.|||
T Consensus       346 ~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~----------G~v~gts~~~S~ng~ylA~GS~~GiVNIYd  415 (514)
T KOG2055|consen  346 VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD----------GSVHGTSLCISLNGSYLATGSDSGIVNIYD  415 (514)
T ss_pred             EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec----------CccceeeeeecCCCceEEeccCcceEEEec
Confidence            8999999999999999999999999999998888777654          334444554488999999999999999999


Q ss_pred             CCC-----CCcceEEEeecCCCeEEEEecCCCCEEEEEeC--CCcEEEEEccCCeEEeeeeCC--CCCCeEEEEecCCCC
Q 014154          244 TSA-----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGK--CSGSIRSIARHPTLP  314 (430)
Q Consensus       244 ~~~-----~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~--~~~~v~~i~~~~~~~  314 (430)
                      .++     ..+|+..+..-...|+++.|+|+.+.|+.++.  ...+++--+.+......+...  .-+.|+|++|+|.+.
T Consensus       416 ~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG  495 (514)
T KOG2055|consen  416 GNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG  495 (514)
T ss_pred             cchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc
Confidence            764     22356666666678999999999999988874  577999888877766666532  134689999999999


Q ss_pred             eEEEEeCCCcEEEEECC
Q 014154          315 IIASCGLDSYLRFWDIK  331 (430)
Q Consensus       315 ~l~s~~~dg~i~iwd~~  331 (430)
                      +|+.|..+|.|.+|.+.
T Consensus       496 ~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  496 YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eEEeecCCCceeeEeec
Confidence            99999999999999874

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=6.8e-21  Score=172.07  Aligned_cols=332  Identities=12%  Similarity=0.090  Sum_probs=234.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC-cceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ..|++++.|.++.+|..... .|+.....++++-.+. ....+.-|  +|+++.+++-+..|..++|...+.. ......
T Consensus       280 ~~LLSASaDksmiiW~pd~~-tGiWv~~vRlGe~gg~a~GF~g~lw--~~n~~~ii~~g~~Gg~hlWkt~d~~-~w~~~~  355 (764)
T KOG1063|consen  280 LDLLSASADKSMIIWKPDEN-TGIWVDVVRLGEVGGSAGGFWGGLW--SPNSNVIIAHGRTGGFHLWKTKDKT-FWTQEP  355 (764)
T ss_pred             hhheecccCcceEEEecCCc-cceEEEEEEeecccccccceeeEEE--cCCCCEEEEecccCcEEEEeccCcc-ceeecc
Confidence            58999999999999999875 5777777777764422 22455556  8888999998999999999832211 111111


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee-----------------------ecC-c---c
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE-----------------------VTK-V---S  146 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~-----------------------~~~-~---~  146 (430)
                          ..++|.+.+..+.|-+..        ..+++.+.|.+-+++.--                       +-+ +   +
T Consensus       356 ----~iSGH~~~V~dv~W~psG--------eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FV  423 (764)
T KOG1063|consen  356 ----VISGHVDGVKDVDWDPSG--------EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFV  423 (764)
T ss_pred             ----ccccccccceeeeecCCC--------CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceee
Confidence                133455666666654433        377777777777666532                       000 0   3


Q ss_pred             ccCCCcceEEeeec------------------------------------------------------------------
Q 014154          147 AESSCSTVKSWNVC------------------------------------------------------------------  160 (430)
Q Consensus       147 ~~~~~~~i~~~~~~------------------------------------------------------------------  160 (430)
                      +++++..+|+|+..                                                                  
T Consensus       424 SgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~eP  503 (764)
T KOG1063|consen  424 SGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEP  503 (764)
T ss_pred             ecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCC
Confidence            44444455555432                                                                  


Q ss_pred             --------------------CCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcc
Q 014154          161 --------------------ASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW  215 (430)
Q Consensus       161 --------------------~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  215 (430)
                                          |+..|.+++.+|+++++|+++...     .|++|+..+-.....+..|.         -.
T Consensus       504 P~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~Hs---------LT  574 (764)
T KOG1063|consen  504 PTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHS---------LT  574 (764)
T ss_pred             ChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccc---------eE
Confidence                                124699999999999999988654     48999998877777777775         67


Q ss_pred             eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce---EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC--
Q 014154          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV---MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG--  290 (430)
Q Consensus       216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~--  290 (430)
                      |+.++|  +||+++|++.+.|.++.+|........-   ...+.|..-|.++.|+|++.+++|++.|.+|.+|.....  
T Consensus       575 VT~l~F--Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d  652 (764)
T KOG1063|consen  575 VTRLAF--SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD  652 (764)
T ss_pred             EEEEEE--CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh
Confidence            999999  9999999999999999999986543322   236679889999999999999999999999999998877  


Q ss_pred             eEEee--eeCCCCCCeEEEEecCC-----CCeEEEEeCCCcEEEEECCCC-ce--eeEEE----e---eccccceEEeee
Q 014154          291 KLLGC--FIGKCSGSIRSIARHPT-----LPIIASCGLDSYLRFWDIKTR-QL--LSAVF----L---KQHLNEVVFDSA  353 (430)
Q Consensus       291 ~~~~~--~~~~~~~~v~~i~~~~~-----~~~l~s~~~dg~i~iwd~~~~-~~--~~~~~----~---~~~~~~~v~~~~  353 (430)
                      +.+..  ...+ ...|++++|.|-     +..++.|-..|.|.+|....- +.  +..+.    +   .+| ...|..+.
T Consensus       653 ~~i~~~a~~~~-~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~aV~rl~  730 (764)
T KOG1063|consen  653 KYISRFACLKF-SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGP-DSAVNRLL  730 (764)
T ss_pred             hhhhhhchhcc-CCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccCh-HHhhheeE
Confidence            43333  2233 778999999872     236788889999999996511 10  01110    1   122 44578889


Q ss_pred             cccc---------ccc--cccCCCCceEecCCC
Q 014154          354 FADK---------EVA--NAAADAPMLEIQNGN  375 (430)
Q Consensus       354 ~s~~---------g~~--~~~~~d~~i~~~~~~  375 (430)
                      |.|.         +.+  +++++|..+++++.+
T Consensus       731 w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  731 WRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             eccccccccccccceeEEeeecccceeEEeecc
Confidence            9875         223  889999999999864

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.4e-21  Score=180.34  Aligned_cols=230  Identities=14%  Similarity=0.135  Sum_probs=184.3

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      ..+++++.+|.+++|.......    .-..|.+    ++..|.+++.  .+++|++|+.+++|.+|.+..++.-..+...
T Consensus        26 efi~tcgsdg~ir~~~~~sd~e----~P~ti~~----~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf   95 (933)
T KOG1274|consen   26 EFICTCGSDGDIRKWKTNSDEE----EPETIDI----SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARF   95 (933)
T ss_pred             CEEEEecCCCceEEeecCCccc----CCchhhc----cCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeee
Confidence            5889999999999998643311    0012211    4566776666  4569999999999999999876542111111


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~  283 (430)
                               .-++++++|  +.+|.+++.|+.|-.|++.++..... ...+.+|.++|.++.|+|.+++||+.+.||.|+
T Consensus        96 ---------tlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~  163 (933)
T KOG1274|consen   96 ---------TLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ  163 (933)
T ss_pred             ---------eccceEEEE--ecCCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence                     145889999  78999999999999999999998654 788999999999999999999999999999999


Q ss_pred             EEEccCCeEEeeeeCC------C-CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          284 SVDIRTGKLLGCFIGK------C-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       284 iwd~~~~~~~~~~~~~------~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      +||+.++.+...+.+-      . ...+..++|+|++..++..+.|+.|.+|+..++.....+....+ ...+..+.|+|
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~-ss~~~~~~wsP  242 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLS-SSKFSDLQWSP  242 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccc-ccceEEEEEcC
Confidence            9999998877666532      1 34567899999988888888999999999999999988644444 44479999999


Q ss_pred             cccc-cccCCCCceEecCCCC
Q 014154          357 KEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       357 ~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +|+| ++++.+|.|.||+.+.
T Consensus       243 nG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  243 NGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CCcEEeeeccCCcEEEEeccc
Confidence            9999 8899999999999984

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.5e-20  Score=169.43  Aligned_cols=318  Identities=13%  Similarity=0.089  Sum_probs=222.4

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCC-CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP-HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ..|+.+-++|.|-||++..+-    -+...+.++ ...  +-+++|  . +|..|.+.+.+|.|.-||+.++++...+..
T Consensus        38 ~~lAvsRt~g~IEiwN~~~~w----~~~~vi~g~~drs--IE~L~W--~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~  108 (691)
T KOG2048|consen   38 NQLAVSRTDGNIEIWNLSNNW----FLEPVIHGPEDRS--IESLAW--A-EGGRLFSSGLSGSITEWDLHTLKQKYNIDS  108 (691)
T ss_pred             CceeeeccCCcEEEEccCCCc----eeeEEEecCCCCc--eeeEEE--c-cCCeEEeecCCceEEEEecccCceeEEecC
Confidence            458889999999999999851    222344443 344  455555  2 345689999999999999999998777653


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceE---EeeecCCCceEEEEE
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK---SWNVCASGTIAFSKV  170 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~---~~~~~~~~~i~~~~~  170 (430)
                              ....|-++...+...        .+..++.+|.+..+  ..+++       .|.   .+. ...+.|.+++|
T Consensus       109 --------~gg~IWsiai~p~~~--------~l~IgcddGvl~~~--s~~p~-------~I~~~r~l~-rq~sRvLslsw  162 (691)
T KOG2048|consen  109 --------NGGAIWSIAINPENT--------ILAIGCDDGVLYDF--SIGPD-------KITYKRSLM-RQKSRVLSLSW  162 (691)
T ss_pred             --------CCcceeEEEeCCccc--------eEEeecCCceEEEE--ecCCc-------eEEEEeecc-cccceEEEEEe
Confidence                    335677777766554        77778888844444  33332       221   222 23578999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       171 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      +|++..|+.|+.||.|++||...+..+..... +...+.-..+.-|.++.|.   ....|++|..-|+|.+||...+. .
T Consensus       163 ~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~-~~d~l~k~~~~iVWSv~~L---rd~tI~sgDS~G~V~FWd~~~gT-L  237 (691)
T KOG2048|consen  163 NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITM-QLDRLSKREPTIVWSVLFL---RDSTIASGDSAGTVTFWDSIFGT-L  237 (691)
T ss_pred             cCCccEEEecccCceEEEEEcCCCceEEEeee-cccccccCCceEEEEEEEe---ecCcEEEecCCceEEEEcccCcc-h
Confidence            99999999999999999999998877662111 1111111122458888885   44589999999999999999866 4


Q ss_pred             eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE---EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (430)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i  327 (430)
                      ++.+..|.+.|.+++..+++.++++++.|+.|..|...+...   ....+.+|...|.+++..++  .+++|+.|..+.+
T Consensus       238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            888889999999999999999999999999999998876643   22222333778888887666  6777777776655


Q ss_pred             EECCC------------------------------------------C--------ceeeEEEeeccccceEEeeecccc
Q 014154          328 WDIKT------------------------------------------R--------QLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       328 wd~~~------------------------------------------~--------~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      -....                                          .        ..+..+.++.  ...+.+.+.||+
T Consensus       316 ~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~--~~nIs~~aiSPd  393 (691)
T KOG2048|consen  316 CSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE--KENISCAAISPD  393 (691)
T ss_pred             ccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCC--ccceeeeccCCC
Confidence            43321                                          0        0011111111  234688999999


Q ss_pred             ccccccCCCCceEecCCCC
Q 014154          358 EVANAAADAPMLEIQNGND  376 (430)
Q Consensus       358 g~~~~~~~d~~i~~~~~~~  376 (430)
                      |.+++-+.-..+++|....
T Consensus       394 g~~Ia~st~~~~~iy~L~~  412 (691)
T KOG2048|consen  394 GNLIAISTVSRTKIYRLQP  412 (691)
T ss_pred             CCEEEEeeccceEEEEecc
Confidence            9997777767777777665

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.4e-20  Score=154.45  Aligned_cols=276  Identities=10%  Similarity=0.120  Sum_probs=187.1

Q ss_pred             CCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154           46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (430)
Q Consensus        46 ~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  125 (430)
                      .+|.+-+.++.|.    +.|+.+|+++.|++|+|||.....-...+...    ...|+..|..+.|.+++-      +..
T Consensus        10 s~h~DlihdVs~D----~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~----Wrah~~Si~rV~WAhPEf------Gqv   75 (361)
T KOG2445|consen   10 SGHKDLIHDVSFD----FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSS----WRAHDGSIWRVVWAHPEF------GQV   75 (361)
T ss_pred             cCCcceeeeeeec----ccCceeeeccCCCcEEEEeccCCCCceEEeee----EEecCCcEEEEEecCccc------cce
Confidence            3466665544443    45889999999999999997554433333322    224567888887776653      357


Q ss_pred             EEEEccCCeeEEEEeeecCccccCCCcceEEee-----ecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeee-
Q 014154          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-----VCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKI-  197 (430)
Q Consensus       126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~-----~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~-  197 (430)
                      +++++.|+++.||.-....     .+..-+.|.     ......|+.+.|.|  -|-.|++++.||.|+||+....-.+ 
T Consensus        76 vA~cS~Drtv~iWEE~~~~-----~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs  150 (361)
T KOG2445|consen   76 VATCSYDRTVSIWEEQEKS-----EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS  150 (361)
T ss_pred             EEEEecCCceeeeeecccc-----cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence            8899999999999753111     111112222     13457899999999  5788999999999999987653222 


Q ss_pred             -----EeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCC-----CcEEEEECCCCC-c--ceEEEeecCCCeEE
Q 014154          198 -----WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND-----HQVRLYDTSAQR-R--PVMSFDFRETPIKA  263 (430)
Q Consensus       198 -----~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d-----g~i~iwd~~~~~-~--~~~~~~~~~~~i~~  263 (430)
                           .+++.....  -..+.....|+.|.++. ...+|+.|+.+     +.+.||...... +  .+..+.+|..+|+.
T Consensus       151 ~W~Lq~Ei~~~~~p--p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~d  228 (361)
T KOG2445|consen  151 QWTLQHEIQNVIDP--PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRD  228 (361)
T ss_pred             cchhhhhhhhccCC--cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCccee
Confidence                 122210000  00122456788885332 23467777665     478899876543 1  34567789999999


Q ss_pred             EEecCCC----CEEEEEeCCCcEEEEEccCC--------------------eEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          264 VAEEPDS----FNIYIGNGSGDLASVDIRTG--------------------KLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       264 ~~~sp~~----~~l~~~~~d~~i~iwd~~~~--------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      |+|.|+-    ..|++++.|| |+||.+...                    +.+..+..| .+.|..+.|+-.|..|++.
T Consensus       229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsSt  306 (361)
T KOG2445|consen  229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSST  306 (361)
T ss_pred             eeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeec
Confidence            9999963    6899999999 999998731                    234456677 8999999999999999999


Q ss_pred             eCCCcEEEEECC---CCceeeEEEeecc
Q 014154          320 GLDSYLRFWDIK---TRQLLSAVFLKQH  344 (430)
Q Consensus       320 ~~dg~i~iwd~~---~~~~~~~~~~~~~  344 (430)
                      |.||.||+|...   ..++...+...++
T Consensus       307 GdDG~VRLWkany~n~~kC~sv~~~e~~  334 (361)
T KOG2445|consen  307 GDDGCVRLWKANYNNLWKCTSVLKAEGS  334 (361)
T ss_pred             CCCceeeehhhhhhhhheeeeEEeccCC
Confidence            999999999764   2345555444444

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=4.2e-22  Score=188.80  Aligned_cols=215  Identities=13%  Similarity=0.146  Sum_probs=169.2

Q ss_pred             eeecCCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCe-ee--EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          157 WNVCASGTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCE-KI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       157 ~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~-~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      |...+...|.++..+|++..+++|+  .|+.+++|+.+.-- ..  .....+..-.....|...|+|+.|  ++||.+||
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~--S~dG~~lA   85 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF--SPDGSYLA   85 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE--CCCCCeEe
Confidence            4444556799999999999999999  89999999975311 00  000001111112234588999999  99999999


Q ss_pred             EEeCCCcEEEEECCC------C-----------CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe
Q 014154          232 AGTNDHQVRLYDTSA------Q-----------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (430)
Q Consensus       232 s~~~dg~i~iwd~~~------~-----------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  294 (430)
                      +|+.|+.|.||....      .           .+.+..+.+|...|..++|+|++.+|++++.|++|.|||.++.+.+.
T Consensus        86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence            999999999999872      0           12467788999999999999999999999999999999999999999


Q ss_pred             eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc-----ccceEEeeeccccccc-ccc----C
Q 014154          295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH-----LNEVVFDSAFADKEVA-NAA----A  364 (430)
Q Consensus       295 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~g~~-~~~----~  364 (430)
                      ++.+| .+.|-.+.|.|-|+||++-+.|++|+||++.+....+.+.  ++     .......+.|||||.+ ++.    +
T Consensus       166 vl~~H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It--~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~  242 (942)
T KOG0973|consen  166 VLRGH-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSIT--KPFEESPLTTFFLRLSWSPDGHHLASPNAVNG  242 (942)
T ss_pred             eeecc-cccccceEECCccCeeeeecCCceEEEEEcccceeeEeec--cchhhCCCcceeeecccCCCcCeecchhhccC
Confidence            99999 8999999999999999999999999999998877777642  22     2345789999999998 332    2


Q ss_pred             CCCceEecCCCC
Q 014154          365 DAPMLEIQNGND  376 (430)
Q Consensus       365 ~d~~i~~~~~~~  376 (430)
                      .-..+.|.+...
T Consensus       243 ~~~~~~IieR~t  254 (942)
T KOG0973|consen  243 GKSTIAIIERGT  254 (942)
T ss_pred             CcceeEEEecCC
Confidence            334566665543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=5.3e-21  Score=157.36  Aligned_cols=284  Identities=13%  Similarity=0.066  Sum_probs=204.5

Q ss_pred             eeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCe
Q 014154           55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK  134 (430)
Q Consensus        55 ~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~  134 (430)
                      .++.|  ++.|.+||+|..||.|.|||+.+...-+.+.+        |..++.++.|.....        .+++++.|..
T Consensus        27 ~~~~F--s~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa--------H~~pi~sl~WS~dgr--------~LltsS~D~s   88 (405)
T KOG1273|consen   27 ECCQF--SRWGDYLAVGCANGRVVIYDFDTFRIARMLSA--------HVRPITSLCWSRDGR--------KLLTSSRDWS   88 (405)
T ss_pred             ceEEe--ccCcceeeeeccCCcEEEEEccccchhhhhhc--------cccceeEEEecCCCC--------EeeeecCCce
Confidence            34444  88899999999999999999998886666554        456888888766554        8999999999


Q ss_pred             eEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154          135 ASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (430)
Q Consensus       135 ~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  213 (430)
                      +.+|++..+.        .++..  ....+|+...|+|.. +.+++.-.+..-.+-++..+.... +........    .
T Consensus        89 i~lwDl~~gs--------~l~ri--rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d~d~dl----n  153 (405)
T KOG1273|consen   89 IKLWDLLKGS--------PLKRI--RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKDDDGDL----N  153 (405)
T ss_pred             eEEEeccCCC--------ceeEE--EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCCCcccc----c
Confidence            9999986443        33333  345899999999944 344444444445555555432211 111111100    0


Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC-CCeEEEEecCCCCEEEEEeCCCcEEEEEccCC--
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG--  290 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~--  290 (430)
                      ....+..|  .+.|+++++|...|.+.++|..+.+ .+..++... ..|.++.++..|++|++-+.|..||.|+++.-  
T Consensus       154 ~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e-~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~  230 (405)
T KOG1273|consen  154 SSASHGVF--DRRGKYIITGTSKGKLLVYDAETLE-CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDD  230 (405)
T ss_pred             cccccccc--cCCCCEEEEecCcceEEEEecchhe-eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcc
Confidence            12233356  7899999999999999999999865 477766655 78999999999999999999999999998621  


Q ss_pred             -----eE--EeeeeCC-CCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeecccccccc
Q 014154          291 -----KL--LGCFIGK-CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAN  361 (430)
Q Consensus       291 -----~~--~~~~~~~-~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~  361 (430)
                           ++  .+.++.- ....=.+++|+.+|.|++.++ .-..++||....|.++..  ++|..+....++.|+|-...+
T Consensus       231 ~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI--LhG~kgE~l~DV~whp~rp~i  308 (405)
T KOG1273|consen  231 EGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI--LHGTKGEELLDVNWHPVRPII  308 (405)
T ss_pred             cCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeee--ecCCchhheeecccccceeee
Confidence                 11  1222210 012335678999999987776 345799999999999998  777766778899999999986


Q ss_pred             ccCCCCceEecCCCC
Q 014154          362 AAADAPMLEIQNGND  376 (430)
Q Consensus       362 ~~~~d~~i~~~~~~~  376 (430)
                      ..-..|.+++|....
T Consensus       309 ~si~sg~v~iw~~~~  323 (405)
T KOG1273|consen  309 ASIASGVVYIWAVVQ  323 (405)
T ss_pred             eeccCCceEEEEeec
Confidence            666899999998654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.89  E-value=4.3e-21  Score=158.47  Aligned_cols=293  Identities=13%  Similarity=0.137  Sum_probs=183.5

Q ss_pred             CCCCCceeEEeecCCeEEEecCCCCcccceeec------cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCe
Q 014154           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISN------AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK  134 (430)
Q Consensus        61 ~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~  134 (430)
                      ++|||.-|++-+.|..+.+|++.....-..-..      +... ..+....+....|++.-+.. ......+++.+.+.-
T Consensus        57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~-r~~eg~tvydy~wYs~M~s~-qP~t~l~a~ssr~~P  134 (406)
T KOG2919|consen   57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSY-RYQEGETVYDYCWYSRMKSD-QPSTNLFAVSSRDQP  134 (406)
T ss_pred             eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeE-EeccCCEEEEEEeeeccccC-CCccceeeeccccCc
Confidence            399999999999999999999853211111000      0000 00122334444444322110 011134444445555


Q ss_pred             eEEEEeeecCccccCCCcceEEeeecC-CCceEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeeeEeeCCCCCCCCCCcC
Q 014154          135 ASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDL-DKCEKIWTAKPPPKNSLGIFT  212 (430)
Q Consensus       135 ~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~  212 (430)
                      +.+|+.-....     .-..+.++... -....+++|+|+|.+|+.| ....|++||+ +.|+....+........+  .
T Consensus       135 Ih~wdaftG~l-----raSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~g--q  206 (406)
T KOG2919|consen  135 IHLWDAFTGKL-----RASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFG--Q  206 (406)
T ss_pred             eeeeecccccc-----ccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccc--c
Confidence            55555322211     00111111100 1346789999999999855 5669999999 444332222111110111  1


Q ss_pred             CcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCC
Q 014154          213 PTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTG  290 (430)
Q Consensus       213 ~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~  290 (430)
                      .+-+.+++|  +| +...++.|+....+-||.-.. ..|+..+-+|.+.|+.+.|.++|+.|++|+. |..|..||+|..
T Consensus       207 ~giisc~a~--sP~~~~~~a~gsY~q~~giy~~~~-~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  207 KGIISCFAF--SPMDSKTLAVGSYGQRVGIYNDDG-RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             cceeeeeec--cCCCCcceeeecccceeeeEecCC-CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            255788999  55 455899999999999998776 4578899999999999999999999999985 678999999964


Q ss_pred             -eEEeeeeCCCCCCeEEE--EecCCCCeEEEEeCCCcEEEEECCC-CceeeEEEeeccccceEEeeeccccccccccCCC
Q 014154          291 -KLLGCFIGKCSGSIRSI--ARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVANAAADA  366 (430)
Q Consensus       291 -~~~~~~~~~~~~~v~~i--~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d  366 (430)
                       .++..+..|-...-..|  ...|++++|++|+.||.|++||+++ +..+..  +..+ +..++.++++|--.+++.+..
T Consensus       284 ~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv--~~~~-sd~vNgvslnP~mpilatssG  360 (406)
T KOG2919|consen  284 RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV--TGNY-SDTVNGVSLNPIMPILATSSG  360 (406)
T ss_pred             cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccc--cccc-cccccceecCcccceeeeccC
Confidence             45777776622233344  4568999999999999999999998 665555  3334 455799999999666544444


Q ss_pred             Cce
Q 014154          367 PML  369 (430)
Q Consensus       367 ~~i  369 (430)
                      ..+
T Consensus       361 qr~  363 (406)
T KOG2919|consen  361 QRI  363 (406)
T ss_pred             cee
Confidence            443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.7e-20  Score=167.00  Aligned_cols=284  Identities=18%  Similarity=0.154  Sum_probs=214.7

Q ss_pred             CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc-eeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV-AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (430)
Q Consensus        48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  126 (430)
                      .+..+.++|++.    +.+.||.+-.+|.|.||++..+=... .+.+       +.+..|-++.|.+  .       ++|
T Consensus        24 ~Ps~I~slA~s~----kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g-------~~drsIE~L~W~e--~-------~RL   83 (691)
T KOG2048|consen   24 KPSEIVSLAYSH----KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG-------PEDRSIESLAWAE--G-------GRL   83 (691)
T ss_pred             eccceEEEEEec----cCCceeeeccCCcEEEEccCCCceeeEEEec-------CCCCceeeEEEcc--C-------CeE
Confidence            345655666655    33469999999999999998654332 2322       3446777777762  2       699


Q ss_pred             EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCC
Q 014154          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (430)
Q Consensus       127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  206 (430)
                      ++.+.+|.+.-|++....        ..+..+ ..++.|++++.+|.+..++.|+.||.+..++...+...+....... 
T Consensus        84 FS~g~sg~i~EwDl~~lk--------~~~~~d-~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq-  153 (691)
T KOG2048|consen   84 FSSGLSGSITEWDLHTLK--------QKYNID-SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ-  153 (691)
T ss_pred             EeecCCceEEEEecccCc--------eeEEec-CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc-
Confidence            999999999999987543        444454 4578999999999999999999999888888887776655433221 


Q ss_pred             CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe----e----cCCCeEEEEecCCCCEEEEEeC
Q 014154          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD----F----RETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~----~~~~i~~~~~sp~~~~l~~~~~  278 (430)
                            .+.|.+++|  +|++..|+.|+.||.|++||...+.. +....    .    ...-|.++.|-.++ .|++|..
T Consensus       154 ------~sRvLslsw--~~~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS  223 (691)
T KOG2048|consen  154 ------KSRVLSLSW--NPTGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDS  223 (691)
T ss_pred             ------cceEEEEEe--cCCccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC-cEEEecC
Confidence                  278999999  89999999999999999999998764 33111    1    12246777776444 8999999


Q ss_pred             CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceee--EEEeeccccceEEeeeccc
Q 014154          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS--AVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~s~  356 (430)
                      .|+|.+||...+.++..+..| .+.|.+++..+++.+++++|.|+.|.-|...+.....  .-....| ..-+.+++..+
T Consensus       224 ~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h-~hdvrs~av~~  301 (691)
T KOG2048|consen  224 AGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLH-AHDVRSMAVIE  301 (691)
T ss_pred             CceEEEEcccCcchhhhhhhh-hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCC-cccceeeeeec
Confidence            999999999999999999998 8999999999999999999999999999887654321  1112334 44467888877


Q ss_pred             cccccccCCCCceEecCC
Q 014154          357 KEVANAAADAPMLEIQNG  374 (430)
Q Consensus       357 ~g~~~~~~~d~~i~~~~~  374 (430)
                      + -+++|+.|..+.+=..
T Consensus       302 ~-~l~sgG~d~~l~i~~s  318 (691)
T KOG2048|consen  302 N-ALISGGRDFTLAICSS  318 (691)
T ss_pred             c-eEEecceeeEEEEccc
Confidence            6 4488888888876543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.6e-22  Score=191.11  Aligned_cols=256  Identities=16%  Similarity=0.205  Sum_probs=193.9

Q ss_pred             CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEe
Q 014154          103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGG  181 (430)
Q Consensus       103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~  181 (430)
                      ...+..+.|-.....    ..|.++.+.+||.+.+|+...-  ........+...+ .|.+.|..+.|++. +++|++|+
T Consensus        64 ~~rF~kL~W~~~g~~----~~GlIaGG~edG~I~ly~p~~~--~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa  136 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSH----SHGLIAGGLEDGNIVLYDPASI--IANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGA  136 (1049)
T ss_pred             cccceeeeecccCCC----ccceeeccccCCceEEecchhh--ccCcchHHHhhhc-ccCCceeeeeccccCCceeeccC
Confidence            346666776655441    1267899999999999997542  0111222333333 67899999999995 56999999


Q ss_pred             CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCC--
Q 014154          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET--  259 (430)
Q Consensus       182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--  259 (430)
                      .||.|.|||+...+.-.....       ....+.|.+++|. ......|++++.+|.+.|||++.. +++..+..+..  
T Consensus       137 ~~geI~iWDlnn~~tP~~~~~-------~~~~~eI~~lsWN-rkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  137 DDGEILIWDLNKPETPFTPGS-------QAPPSEIKCLSWN-RKVSHILASGSPSGRAVIWDLRKK-KPIIKLSDTPGRM  207 (1049)
T ss_pred             CCCcEEEeccCCcCCCCCCCC-------CCCcccceEeccc-hhhhHHhhccCCCCCceeccccCC-CcccccccCCCcc
Confidence            999999999987554443321       1123779999994 334568899999999999999985 45666666543  


Q ss_pred             CeEEEEecCCC-CEEEEEeCC---CcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCC
Q 014154          260 PIKAVAEEPDS-FNIYIGNGS---GDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       260 ~i~~~~~sp~~-~~l~~~~~d---~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~  333 (430)
                      .+..++|+|+. ..|++++.|   -.|.+||+|.. ..++++.+| ...|.++.|++.+ ++|++++.|+.|.+|+.+++
T Consensus       208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H-~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg  286 (1049)
T KOG0307|consen  208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH-QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG  286 (1049)
T ss_pred             ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc-ccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence            47789999987 556666655   35999999864 467788888 8999999999966 89999999999999999999


Q ss_pred             ceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCCc
Q 014154          334 QLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~~  378 (430)
                      +.+..+  .. .+..++.+.|+|...-  ++++-||.|.||......
T Consensus       287 Evl~~~--p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  287 EVLGEL--PA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eEeeec--CC-CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999985  33 3667899999998773  788899999999886543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=2.5e-21  Score=172.07  Aligned_cols=287  Identities=17%  Similarity=0.206  Sum_probs=193.0

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec-
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN-   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~-   93 (430)
                      ..|++|+.||+||||.+.++     .++.++. ....|.+++++.  .++-..||++-... +.|.+..-|..+..... 
T Consensus       413 ~wlasGsdDGtvriWEi~Tg-----Rcvr~~~-~d~~I~~vaw~P--~~~~~vLAvA~~~~-~~ivnp~~G~~~e~~~t~  483 (733)
T KOG0650|consen  413 EWLASGSDDGTVRIWEIATG-----RCVRTVQ-FDSEIRSVAWNP--LSDLCVLAVAVGEC-VLIVNPIFGDRLEVGPTK  483 (733)
T ss_pred             ceeeecCCCCcEEEEEeecc-----eEEEEEe-ecceeEEEEecC--CCCceeEEEEecCc-eEEeCccccchhhhcchh
Confidence            57899999999999999998     7776665 344666666666  66666777765544 77777655533322111 


Q ss_pred             --cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc----cc---cCCCcceEEeeec----
Q 014154           94 --AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----SA---ESSCSTVKSWNVC----  160 (430)
Q Consensus        94 --~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~----~~---~~~~~~i~~~~~~----  160 (430)
                        +....  ....+..++..|.....+... .+..++....  -.|..+.+...    ++   .+....|.++.+.    
T Consensus       484 ell~~~~--~~~~p~~~~~~W~~~~~~e~~-~~v~~~I~~~--k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s  558 (733)
T KOG0650|consen  484 ELLASAP--NESEPDAAVVTWSRASLDELE-KGVCIVIKHP--KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS  558 (733)
T ss_pred             hhhhcCC--CccCCcccceeechhhhhhhc-cceEEEEecC--CccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence              00000  001122233334332111000 0111111111  11222222221    00   0111223333322    


Q ss_pred             ------CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154          161 ------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (430)
Q Consensus       161 ------~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  234 (430)
                            ..+.|.++.|+|...+|++++.. .|++||+...+.+..+....         .+|..++.  +|.|..|+.++
T Consensus       559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~---------kwiS~msi--hp~GDnli~gs  626 (733)
T KOG0650|consen  559 QSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGS---------KWISSMSI--HPNGDNLILGS  626 (733)
T ss_pred             cCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCC---------eeeeeeee--cCCCCeEEEec
Confidence                  24679999999999999988876 89999998877666655433         78999999  89999999999


Q ss_pred             CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc------CC---eEEeeeeCCCCC---
Q 014154          235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR------TG---KLLGCFIGKCSG---  302 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~------~~---~~~~~~~~~~~~---  302 (430)
                      .|+.+..||+.-..++.+++..|...+++++|++.-.++++|+.||++.||--.      ..   -++..+.+| ..   
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH-~~~~~  705 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH-EKTND  705 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc-eeecc
Confidence            999999999998888899999999999999999999999999999999988432      22   246677787 44   


Q ss_pred             -CeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154          303 -SIRSIARHPTLPIIASCGLDSYLRFW  328 (430)
Q Consensus       303 -~v~~i~~~~~~~~l~s~~~dg~i~iw  328 (430)
                       .|..+.|||...+|++++.||+|++|
T Consensus       706 ~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  706 LGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             cceEeecccCCCceEEecCCCceEEee
Confidence             48889999999999999999999998

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.8e-21  Score=169.23  Aligned_cols=272  Identities=14%  Similarity=0.162  Sum_probs=199.0

Q ss_pred             eEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC--eeEEEEeeecCc
Q 014154           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG--KASMRSIEVTKV  145 (430)
Q Consensus        68 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~  145 (430)
                      |..++....++|||+........+..+.+.      ..+.++.|-..         ..+++++..|  .+.+|.-...  
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~------pg~~s~~w~~~---------n~lvvas~~gdk~~~~~~K~g~--   67 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAE------PGDFSFNWQRR---------NFLVVASMAGDKVMRIKEKDGK--   67 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCC------Ccceeeecccc---------ceEEEeecCCceeEEEecccCC--
Confidence            334445567999999766554444433221      13444444332         2455555444  4555543211  


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                           .+.|-+.....+..-.|++......++++|+..+.|+|||++...+.+.++.|+         +.|+++.|  +.
T Consensus        68 -----~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~---------stvt~v~Y--N~  131 (673)
T KOG4378|consen   68 -----TPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ---------STVTYVDY--NN  131 (673)
T ss_pred             -----CCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc---------ceeEEEEe--cC
Confidence                 123444444445555666666667899999999999999999776777777776         78999999  67


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCE-EEEEeCCCcEEEEEccCCeEEeeeeCCCCCC
Q 014154          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFN-IYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  303 (430)
                      ...+|++++..|.|.|..+.++.+ ...|... ...|.-+.|+|..++ |.+++.+|.|.+||+....++..+...|.++
T Consensus       132 ~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP  210 (673)
T KOG4378|consen  132 TDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP  210 (673)
T ss_pred             CcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC
Confidence            788999999999999999998654 4445443 456778999998755 5577889999999998877777766555999


Q ss_pred             eEEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          304 IRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       304 v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      ...|+|+|.. .+|++.|.|..|++||+...+....+..    ......++|+++|.+ ++|...|.|..||....
T Consensus       211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~  282 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRST  282 (673)
T ss_pred             cCcceecCCccceEEEecccceEEEeecccccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence            9999999965 5788999999999999998887777543    334688999999999 88999999999998654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=5e-23  Score=186.52  Aligned_cols=200  Identities=20%  Similarity=0.261  Sum_probs=180.1

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  239 (430)
                      .|...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|.         ..|.++.|  ++...+|+.|+.+|+|
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~he---------spIeSl~f--~~~E~Llaagsasgti   94 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHE---------SPIESLTF--DTSERLLAAGSASGTI   94 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccC---------Ccceeeec--CcchhhhcccccCCce
Confidence            345667777776678999999999999999998777777777765         78999999  7888999999999999


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      ++||+...+ .++++.+|...+.++.|+|-+.+.+.|+.|+.+++||.+..-+.+.+.+| ...|..+.|+|+|++++++
T Consensus        95 K~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~Gr~v~~g  172 (825)
T KOG0267|consen   95 KVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDGRWVASG  172 (825)
T ss_pred             eeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCCceeecc
Confidence            999999865 58899999999999999999999999999999999999988999999997 8899999999999999999


Q ss_pred             eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          320 GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       320 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      ++|..++|||...|+.+..  +.+| ...+..+.|+|..-+ +.|+.|+++++|+..
T Consensus       173 ~ed~tvki~d~~agk~~~e--f~~~-e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  173 GEDNTVKIWDLTAGKLSKE--FKSH-EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             CCcceeeeecccccccccc--cccc-cccccccccCchhhhhccCCCCceeeeeccc
Confidence            9999999999999999988  5667 455688999999988 999999999999987

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.3e-20  Score=161.97  Aligned_cols=256  Identities=12%  Similarity=0.150  Sum_probs=185.2

Q ss_pred             EEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccc-----cCCCcce------EEe-eecCCCceEEEEEcC-CC
Q 014154          108 GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA-----ESSCSTV------KSW-NVCASGTIAFSKVDI-SE  174 (430)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-----~~~~~~i------~~~-~~~~~~~i~~~~~~~-~~  174 (430)
                      ++.|.+. ....+..+++++.|+.+-.+.||++.....+.     ++.....      +-. ...|...|..++|+- ..
T Consensus       178 C~ewld~-~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  178 CIEWLDH-GSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhc-CCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            4555554 22223455689999999999999987654311     1000000      000 112445566777765 35


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      +.||+|+.|.+|.+||+.++++...+..+.         ..|.++.|+ +....+|++|+.|++|.+.|.+.....-..+
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~---------k~Vq~l~wh-~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w  326 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHG---------KKVQTLEWH-PYEPSVLLSGSYDGTVALKDCRDPSNSGKEW  326 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcC---------CceeEEEec-CCCceEEEeccccceEEeeeccCccccCceE
Confidence            789999999999999999999988887654         779999996 4567899999999999999999644333333


Q ss_pred             eecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECC
Q 014154          255 DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       255 ~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~  331 (430)
                      +. .+.|-.++|.|.. ..++++..||+|+-+|+|+. +++.+++.| ..+|.++++++.- .+|++++.|+.|++|++.
T Consensus       327 k~-~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  327 KF-DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             Ee-ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec-cCCcceEEecCCCCcceeeccccceEEEEeec
Confidence            32 3689999998865 56778889999999999975 899999999 8999999998865 478999999999999987


Q ss_pred             CCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154          332 TRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~  377 (430)
                      .-.........-. -+...|.++.|+-.+  ++|+..+.++||+....
T Consensus       405 ~~~~~~v~~~~~~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  405 VDSPKSVKEHSFK-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             CCCCccccccccc-ccceeecccCCCcceEEEecCccceEEEeecccC
Confidence            5443222101001 122567788887655  88888889999998763

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=7.6e-21  Score=163.30  Aligned_cols=245  Identities=16%  Similarity=0.165  Sum_probs=176.4

Q ss_pred             CCceeEEeecCCeEEEecCCCCcc---cceeec----------cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc
Q 014154           64 NDPLLAVARKNGLTDILNPLNGDL---RVAISN----------AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (430)
Q Consensus        64 ~g~~l~~g~~dg~i~iwd~~~~~~---~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  130 (430)
                      -|+|+|.|+.|..|.|||+.--..   ...+..          -.....+.|.+.+..+.+.....       +.|++++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~-------nVLaSgs  263 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR-------NVLASGS  263 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc-------eeEEecC
Confidence            367999999999999999852111   111110          11122234555555444433333       6899999


Q ss_pred             cCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC---eeeEeeCCCCCC
Q 014154          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKC---EKIWTAKPPPKN  206 (430)
Q Consensus       131 ~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~  206 (430)
                      .|.++.+|++.....        ..... .|++.|.++.|+| ...+|++|+.|++|.++|.+..   ...+.+.     
T Consensus       264 aD~TV~lWD~~~g~p--------~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-----  329 (463)
T KOG0270|consen  264 ADKTVKLWDVDTGKP--------KSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-----  329 (463)
T ss_pred             CCceEEEEEcCCCCc--------ceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-----
Confidence            999999999986653        22332 5789999999999 5678999999999999999842   2223322     


Q ss_pred             CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEE
Q 014154          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASV  285 (430)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iw  285 (430)
                             +.|-.++|. ......+++++.||+|+-+|+|....++.+++.|.++|.+|++++.- .++++++.|+.|++|
T Consensus       330 -------g~VEkv~w~-~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw  401 (463)
T KOG0270|consen  330 -------GEVEKVAWD-PHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLW  401 (463)
T ss_pred             -------cceEEEEec-CCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEE
Confidence                   458888994 23455788889999999999999888999999999999999998754 578899999999999


Q ss_pred             EccCCeE--EeeeeCCCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECCCCceeeE
Q 014154          286 DIRTGKL--LGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       286 d~~~~~~--~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      ++.....  +..-.-. -+...|+++.|+-. +|+.|+..+.++|||+.+...+..
T Consensus       402 ~~~~~~~~~v~~~~~~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~k  456 (463)
T KOG0270|consen  402 KFDVDSPKSVKEHSFK-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVRK  456 (463)
T ss_pred             eecCCCCccccccccc-ccceeecccCCCcceEEEecCccceEEEeecccChhHHH
Confidence            9875443  2111111 23467778888764 577888888899999988776554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.7e-20  Score=152.46  Aligned_cols=274  Identities=14%  Similarity=0.146  Sum_probs=197.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|+.|..||.|.|||+.+-     .....+.+|-.+++  +++|  +++|+.|++++.|..|.+||+..|.++..+.--
T Consensus        36 ~~lAvGc~nG~vvI~D~~T~-----~iar~lsaH~~pi~--sl~W--S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~  106 (405)
T KOG1273|consen   36 DYLAVGCANGRVVIYDFDTF-----RIARMLSAHVRPIT--SLCW--SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD  106 (405)
T ss_pred             ceeeeeccCCcEEEEEcccc-----chhhhhhcccccee--EEEe--cCCCCEeeeecCCceeEEEeccCCCceeEEEcc
Confidence            56889999999999999985     45566889999955  5556  778889999999999999999999988877641


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc--cccCCCcceEEeeecCCCceEEEEEcC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                               .++....+.+...       +.++++-.+-.-.+..+.....  .....++...       ....+..|++
T Consensus       107 ---------spv~~~q~hp~k~-------n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln-------~sas~~~fdr  163 (405)
T KOG1273|consen  107 ---------SPVWGAQWHPRKR-------NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN-------SSASHGVFDR  163 (405)
T ss_pred             ---------CccceeeeccccC-------CeEEEEEecCCcEEEEecCCceeeccCCCccccc-------cccccccccC
Confidence                     3555555555444       4555544444333333321100  1111111111       1122336888


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc---
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---  249 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---  249 (430)
                      .|+++++|...|.+.+||.++.+++..++...        ...|..+.|  +..|++|+.-+.|..|+.|+++.-..   
T Consensus       164 ~g~yIitGtsKGkllv~~a~t~e~vas~rits--------~~~IK~I~~--s~~g~~liiNtsDRvIR~ye~~di~~~~r  233 (405)
T KOG1273|consen  164 RGKYIITGTSKGKLLVYDAETLECVASFRITS--------VQAIKQIIV--SRKGRFLIINTSDRVIRTYEISDIDDEGR  233 (405)
T ss_pred             CCCEEEEecCcceEEEEecchheeeeeeeech--------heeeeEEEE--eccCcEEEEecCCceEEEEehhhhcccCc
Confidence            99999999999999999999988877665432        145788888  78999999999999999999873110   


Q ss_pred             -----ceEEEee--cCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154          250 -----PVMSFDF--RETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       250 -----~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                           +.+.++.  ....-.+++|+.+|.|+++++. ...++||....|.+++.+.|........+.|+|-...+++- .
T Consensus       234 ~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~  312 (405)
T KOG1273|consen  234 DGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-A  312 (405)
T ss_pred             cCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-c
Confidence                 0011110  1123467889999999988774 36799999999999999998733678889999999888887 7


Q ss_pred             CCcEEEEECC
Q 014154          322 DSYLRFWDIK  331 (430)
Q Consensus       322 dg~i~iwd~~  331 (430)
                      .|.|+||...
T Consensus       313 sg~v~iw~~~  322 (405)
T KOG1273|consen  313 SGVVYIWAVV  322 (405)
T ss_pred             CCceEEEEee
Confidence            7899999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.88  E-value=1.2e-20  Score=162.75  Aligned_cols=292  Identities=12%  Similarity=0.106  Sum_probs=207.5

Q ss_pred             CCCCcceeeeeecCCCC--CceeEEeecCCeEEEecCCCCc-ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCc
Q 014154           48 PHSSNCVLAASIDDSQN--DPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (430)
Q Consensus        48 ~~~~~~~~~~~~~~~p~--g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  124 (430)
                      +.+.+.  ++.|  +|.  -+++|+|+.-|.|-+||+.+.+ ....+..     |.+|..++.++.+.+.+.       .
T Consensus       185 ~~~Rit--~l~f--HPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~-----f~~hs~~Vs~l~F~P~n~-------s  248 (498)
T KOG4328|consen  185 TDRRIT--SLAF--HPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL-----FTPHSGPVSGLKFSPANT-------S  248 (498)
T ss_pred             cccceE--EEEe--cccCcceEEEEccCCCcEEEEecCCCCCccCceEE-----eccCCccccceEecCCCh-------h
Confidence            455544  4444  444  3589999999999999995222 2222221     556778999999998877       7


Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeee-cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEeeCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKP  202 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~  202 (430)
                      .+++.+.||+++.-++...-.      ..  ++.. .....+..+.|+.+...++++..=|...+||++++.. ...+..
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~------e~--v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l  320 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNIS------EE--VLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL  320 (498)
T ss_pred             heeeeccCceeeeeeecchhh------HH--HhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence            999999999999998764321      01  1111 1224456678888888888888888999999987654 444444


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC--c-ceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--R-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (430)
                      |.         ..|.++++. +-...+|++++.|++++|||++...  . |+.....|...|.++.|||.+..|++.+.|
T Consensus       321 h~---------kKI~sv~~N-P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D  390 (498)
T KOG4328|consen  321 HK---------KKITSVALN-PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD  390 (498)
T ss_pred             hh---------cccceeecC-CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC
Confidence            43         468999994 2245689999999999999998632  2 345555688999999999999889999999


Q ss_pred             CcEEEEEcc----CCeEEeeeeCCC--CC--CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecccc-ceEE
Q 014154          280 GDLASVDIR----TGKLLGCFIGKC--SG--SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLN-EVVF  350 (430)
Q Consensus       280 ~~i~iwd~~----~~~~~~~~~~~~--~~--~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~v~  350 (430)
                      +.|+|||..    ...+..++...+  ..  ......|.|+..++++|-.-..|-|||-..++++..+  ..... .+..
T Consensus       391 ~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el--~~P~~~tI~~  468 (498)
T KOG4328|consen  391 NEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL--HDPESSTIPS  468 (498)
T ss_pred             CceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec--cCcccccccc
Confidence            999999983    333333333210  11  2345679999999999998889999999999988774  33322 3334


Q ss_pred             eeecccccc-c-cccCCCCceEecCCC
Q 014154          351 DSAFADKEV-A-NAAADAPMLEIQNGN  375 (430)
Q Consensus       351 ~~~~s~~g~-~-~~~~~d~~i~~~~~~  375 (430)
                      -..|+|-+. + +.++..|.|+||...
T Consensus       469 vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  469 VNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             ceeecccccceeccCCccceEEEEecC
Confidence            468999877 4 445577888888654

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.1e-21  Score=158.26  Aligned_cols=210  Identities=15%  Similarity=0.147  Sum_probs=158.2

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE-EEEeCCCc
Q 014154          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQ  238 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~  238 (430)
                      .|++.|++++|+.+|++|++++.|+.|++|+++....    +.|.-....+ ..+..+.++|  .||..-+ +++-...+
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr~~R~nv-e~dhpT~V~F--apDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHRCIRQNV-EYDHPTRVVF--APDCKSVVVSVKRGNK  156 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhhHhhccc-cCCCceEEEE--CCCcceEEEEEccCCE
Confidence            5789999999999999999999999999999976221    1111000000 0134678899  7777654 44555668


Q ss_pred             EEEEECCCCC---cceE--------EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEE
Q 014154          239 VRLYDTSAQR---RPVM--------SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI  307 (430)
Q Consensus       239 i~iwd~~~~~---~~~~--------~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i  307 (430)
                      +++|.+...+   -+..        .-..|...+..+-...++.+|++++.|..|.+|+++ |+.+..+... ...-+..
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn-q~~n~~a  234 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN-QSSNYDA  234 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-cccccce
Confidence            9999875321   1111        112355667777777888999999999999999998 9999888876 6667788


Q ss_pred             EecCCCCeEEEEeCCCcEEEEECC---CC---ceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCcc
Q 014154          308 ARHPTLPIIASCGLDSYLRFWDIK---TR---QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       308 ~~~~~~~~l~s~~~dg~i~iwd~~---~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~~  379 (430)
                      +.||+|++|++++.---|++|.+-   .|   +....+.++|| ...|..++|+++... ++++.||.+++||.+...+
T Consensus       235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence            999999999999998889999863   22   23445568999 555799999999988 9999999999999987554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=7.8e-21  Score=159.96  Aligned_cols=234  Identities=15%  Similarity=0.193  Sum_probs=170.4

Q ss_pred             eEEEEccCCeeEEEEeeecCc--------cccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe
Q 014154          125 TLLTCTTKGKASMRSIEVTKV--------SAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCE  195 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~--------~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~  195 (430)
                      .+++-+..|.+.||++...-.        ..-+...++..+. .|++.=..++|+| ....|++|.--+.|++|...++.
T Consensus       167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~  245 (440)
T KOG0302|consen  167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS  245 (440)
T ss_pred             eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccccccccccCccccceEeeeeccCc
Confidence            566778889999999864322        1223445555555 5667788999999 33457788888899999988754


Q ss_pred             eeEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEECCCC-CcceEEEeecCCCeEEEEecCCCCEE
Q 014154          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFRETPIKAVAEEPDSFNI  273 (430)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~sp~~~~l  273 (430)
                      -...-..      .+.|...|..++|  +|. ...|++|+.||+|+|||++.+ +.+....+.|.+.|+.|.|+....+|
T Consensus       246 W~vd~~P------f~gH~~SVEDLqW--SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lL  317 (440)
T KOG0302|consen  246 WKVDQRP------FTGHTKSVEDLQW--SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLL  317 (440)
T ss_pred             eeecCcc------ccccccchhhhcc--CCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCccee
Confidence            3211111      1225578999999  554 458999999999999999986 33445558899999999999988899


Q ss_pred             EEEeCCCcEEEEEccC---CeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCce--------------
Q 014154          274 YIGNGSGDLASVDIRT---GKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQL--------------  335 (430)
Q Consensus       274 ~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~--------------  335 (430)
                      ++|+.||+++|||+|+   ++++..|+-| ..+|++|.|+|.. ..|+++|.|.+|.|||+.-..-              
T Consensus       318 asG~DdGt~~iwDLR~~~~~~pVA~fk~H-k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~d  396 (440)
T KOG0302|consen  318 ASGGDDGTLSIWDLRQFKSGQPVATFKYH-KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQD  396 (440)
T ss_pred             eecCCCceEEEEEhhhccCCCcceeEEec-cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhc
Confidence            9999999999999985   5678899988 9999999999954 5788888999999999853211              


Q ss_pred             --eeEEEeeccccceEEeeeccccc--cccccCCCCce
Q 014154          336 --LSAVFLKQHLNEVVFDSAFADKE--VANAAADAPML  369 (430)
Q Consensus       336 --~~~~~~~~~~~~~v~~~~~s~~g--~~~~~~~d~~i  369 (430)
                        .+.++.+.. ...+-.+.|+++-  .+++.+.||.-
T Consensus       397 lPpQLLFVHqG-Qke~KevhWH~QiPG~lvsTa~dGfn  433 (440)
T KOG0302|consen  397 LPPQLLFVHQG-QKEVKEVHWHRQIPGLLVSTAIDGFN  433 (440)
T ss_pred             CCceeEEEecc-hhHhhhheeccCCCCeEEEeccccee
Confidence              111112211 2335788999864  44777777754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1e-19  Score=149.39  Aligned_cols=236  Identities=16%  Similarity=0.219  Sum_probs=173.2

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCC-------
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKC-------  194 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~-------  194 (430)
                      .++++|+.|+++.||+......    .-..---|. .|.+.|..+.|.+  -|+.+|+++.|+++.||.-...       
T Consensus        26 RRmAtCSsDq~vkI~d~~~~s~----~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~  100 (361)
T KOG2445|consen   26 RRMATCSSDQTVKIWDSTSDSG----TWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGR  100 (361)
T ss_pred             ceeeeccCCCcEEEEeccCCCC----ceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccc
Confidence            6999999999999999632211    111223465 5788899999965  5899999999999999975211       


Q ss_pred             --eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc-----ceEEEe-------ecCCC
Q 014154          195 --EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-----PVMSFD-------FRETP  260 (430)
Q Consensus       195 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~-------~~~~~  260 (430)
                        ....++...         ...|+.+.|.|..-|-.|++++.||.|+||+......     ....+.       .+..+
T Consensus       101 ~Wv~~ttl~Ds---------rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~  171 (361)
T KOG2445|consen  101 RWVRRTTLVDS---------RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP  171 (361)
T ss_pred             eeEEEEEeecC---------CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence              011222222         2679999997666788999999999999999765321     111222       34567


Q ss_pred             eEEEEecCC---CCEEEEEeCC-----CcEEEEEccCC----eEEeeeeCCCCCCeEEEEecCCC----CeEEEEeCCCc
Q 014154          261 IKAVAEEPD---SFNIYIGNGS-----GDLASVDIRTG----KLLGCFIGKCSGSIRSIARHPTL----PIIASCGLDSY  324 (430)
Q Consensus       261 i~~~~~sp~---~~~l~~~~~d-----~~i~iwd~~~~----~~~~~~~~~~~~~v~~i~~~~~~----~~l~s~~~dg~  324 (430)
                      ..|+.|+|.   ..+|++|+.+     +.+.||....+    ..+.++.+| ..+|+.|+|.|+-    .+||+++.|| 
T Consensus       172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~-~dpI~di~wAPn~Gr~y~~lAvA~kDg-  249 (361)
T KOG2445|consen  172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDH-TDPIRDISWAPNIGRSYHLLAVATKDG-  249 (361)
T ss_pred             ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCC-CCcceeeeeccccCCceeeEEEeecCc-
Confidence            889999975   3688888766     57888876533    346677887 9999999999964    5799999999 


Q ss_pred             EEEEECCCCc-----------------eeeEEE-eeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          325 LRFWDIKTRQ-----------------LLSAVF-LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       325 i~iwd~~~~~-----------------~~~~~~-~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      |+||+++...                 .+..+. +.+| .+.|+.+.|+-.|.. .+.++||.|++|..+-
T Consensus       250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            9999987311                 122222 4566 666899999999999 8899999999998765

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.87  E-value=3.2e-20  Score=160.03  Aligned_cols=284  Identities=14%  Similarity=0.101  Sum_probs=195.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++|+.-|.|-+||+.... ....-+..+..|..+|..+.|++.+.   ..+++.+.||+|++-|++.+.....+..-
T Consensus       201 ~lva~GdK~G~VG~Wn~~~~~-~d~d~v~~f~~hs~~Vs~l~F~P~n~---s~i~ssSyDGtiR~~D~~~~i~e~v~s~~  276 (498)
T KOG4328|consen  201 KLVAVGDKGGQVGLWNFGTQE-KDKDGVYLFTPHSGPVSGLKFSPANT---SQIYSSSYDGTIRLQDFEGNISEEVLSLD  276 (498)
T ss_pred             eEEEEccCCCcEEEEecCCCC-CccCceEEeccCCccccceEecCCCh---hheeeeccCceeeeeeecchhhHHHhhcC
Confidence            678899999999999996421 12223445778999999999987433   56899999999999999766533222210


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-C
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~  173 (430)
                            -....+..+.+....        ..++.+..-|...+|++.....       ....|.+ |...|..++++| .
T Consensus       277 ------~d~~~fs~~d~~~e~--------~~vl~~~~~G~f~~iD~R~~~s-------~~~~~~l-h~kKI~sv~~NP~~  334 (498)
T KOG4328|consen  277 ------TDNIWFSSLDFSAES--------RSVLFGDNVGNFNVIDLRTDGS-------EYENLRL-HKKKITSVALNPVC  334 (498)
T ss_pred             ------ccceeeeeccccCCC--------ccEEEeecccceEEEEeecCCc-------cchhhhh-hhcccceeecCCCC
Confidence                  000122222222222        4677777777888998875432       3444443 456999999999 5


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC---CCCcc
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS---AQRRP  250 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~  250 (430)
                      ..+|++++.|++++|||++......+     .....+.|...|.++.|  +|.+..|++.+.|..|+|||..   ....+
T Consensus       335 p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyF--SPs~gtl~TT~~D~~IRv~dss~~sa~~~p  407 (498)
T KOG4328|consen  335 PWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYF--SPSGGTLLTTCQDNEIRVFDSSCISAKDEP  407 (498)
T ss_pred             chheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEE--cCCCCceEeeccCCceEEeecccccccCCc
Confidence            67889999999999999975332221     01112334577999999  7888789999999999999984   22334


Q ss_pred             eEEEeecC-----CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEE-EEecCCCCeEEEE-eCCC
Q 014154          251 VMSFDFRE-----TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASC-GLDS  323 (430)
Q Consensus       251 ~~~~~~~~-----~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~s~-~~dg  323 (430)
                      ...+....     -......|.|+..+|++|-.-..|-|||-..++.+..+.......|.+ ..|+|-+..+++| +..|
T Consensus       408 ~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~G  487 (498)
T KOG4328|consen  408 LGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSG  487 (498)
T ss_pred             cceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccc
Confidence            44443211     123456799999999999999999999999999888876542335555 4799988745555 5678


Q ss_pred             cEEEEECC
Q 014154          324 YLRFWDIK  331 (430)
Q Consensus       324 ~i~iwd~~  331 (430)
                      .|+||--+
T Consensus       488 ki~vft~k  495 (498)
T KOG4328|consen  488 KIYVFTNK  495 (498)
T ss_pred             eEEEEecC
Confidence            88888654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=1.3e-20  Score=158.71  Aligned_cols=210  Identities=17%  Similarity=0.234  Sum_probs=158.3

Q ss_pred             EEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCC----------------CeeeEeeCCCCCCCCCCcCCcce
Q 014154          155 KSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDK----------------CEKIWTAKPPPKNSLGIFTPTWF  216 (430)
Q Consensus       155 ~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~v  216 (430)
                      ..-.+.|.+.+..+...+  +..+.++-+..|.|.||++..                .++++++..|.         ..=
T Consensus       144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk---------~EG  214 (440)
T KOG0302|consen  144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK---------GEG  214 (440)
T ss_pred             cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC---------ccc
Confidence            333445566666666665  445666778899999999853                13344444444         334


Q ss_pred             eEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc--eEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCC---
Q 014154          217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP--VMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG---  290 (430)
Q Consensus       217 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~---  290 (430)
                      ..++|++. ....|++|..-+.|++|...++.-.  ...+.+|+..|-.++|||.. ..|++++.||+|+|||+|.+   
T Consensus       215 y~LdWSp~-~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~  293 (440)
T KOG0302|consen  215 YGLDWSPI-KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK  293 (440)
T ss_pred             eeeecccc-cccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence            67888422 2335888888899999998875421  23456799999999999975 68889999999999999988   


Q ss_pred             eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC---CceeeEEEeeccccceEEeeeccccccc--cccCC
Q 014154          291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT---RQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAAD  365 (430)
Q Consensus       291 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~  365 (430)
                      .++.+ +.| .+.|+-|.|+....+|++|+.||+++|||++.   ++++..  ++.| ...|+++.|+|....  ++++.
T Consensus       294 ~~~~~-kAh-~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~--fk~H-k~pItsieW~p~e~s~iaasg~  368 (440)
T KOG0302|consen  294 AAVST-KAH-NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT--FKYH-KAPITSIEWHPHEDSVIAASGE  368 (440)
T ss_pred             ceeEe-ecc-CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee--EEec-cCCeeEEEeccccCceEEeccC
Confidence            33433 666 88999999999988999999999999999975   566777  4556 566899999997654  88999


Q ss_pred             CCceEecCCCCCcc
Q 014154          366 APMLEIQNGNDTQE  379 (430)
Q Consensus       366 d~~i~~~~~~~~~~  379 (430)
                      |..|.+||......
T Consensus       369 D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  369 DNQITIWDLSVEAD  382 (440)
T ss_pred             CCcEEEEEeeccCC
Confidence            99999999976543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.9e-19  Score=169.92  Aligned_cols=291  Identities=18%  Similarity=0.228  Sum_probs=208.5

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      +|-.+.+++++..-.|+|||.+.++.+..|....     +-...+..+.+.+....      ..+++++.||.++||.--
T Consensus      1073 hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-----~~~t~Vs~l~liNe~D~------aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-----FPDTRVSDLELINEQDD------ALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred             cCCCceeEEcCCcceEEEEecccCceeccccCCC-----CCCCccceeeeecccch------hheeeeccCceEEEeccc
Confidence            5666779999888899999999999877776532     23457888888887653      489999999999999843


Q ss_pred             ecCccccCCCcceEEeeecC------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcc
Q 014154          142 VTKVSAESSCSTVKSWNVCA------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW  215 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  215 (430)
                      ....   ..-..|.-|..-.      .+.=.-+.|.....+|++++.-..|+|||...-..+..+....        ..-
T Consensus      1142 ~~~~---~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s--------~t~ 1210 (1387)
T KOG1517|consen 1142 ADKW---KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS--------STL 1210 (1387)
T ss_pred             cccc---CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC--------Ccc
Confidence            3210   1112333343211      1111345677766677777778899999998776666554432        134


Q ss_pred             eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC--cceEEEeecCCC--eEEEEecCCCC-EEEEEeCCCcEEEEEccCC
Q 014154          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--RPVMSFDFRETP--IKAVAEEPDSF-NIYIGNGSGDLASVDIRTG  290 (430)
Q Consensus       216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~--i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~  290 (430)
                      |+++.-. ...|+.|+.|..||.|++||.+...  .++.....|+..  |..+.+.++|- .|++|+.+|.|++||+|..
T Consensus      1211 vTaLS~~-~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1211 VTALSAD-LVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             ceeeccc-ccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence            6666553 4568999999999999999998643  367778888877  99999988774 5999999999999999984


Q ss_pred             eEEe--eeeCCC--CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe----eccccceEEeeeccccccc-c
Q 014154          291 KLLG--CFIGKC--SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL----KQHLNEVVFDSAFADKEVA-N  361 (430)
Q Consensus       291 ~~~~--~~~~~~--~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~-~  361 (430)
                      ....  .+..|-  .+..+++..|+..+.+|+|+. +.|+||++. |+.+..+..    -+.....+.+++|+|-..+ +
T Consensus      1290 ~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1290 SKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred             cccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence            3222  222221  224899999999999999998 999999986 444433221    1222334689999999888 8


Q ss_pred             ccCCCCceEecCCCCC
Q 014154          362 AAADAPMLEIQNGNDT  377 (430)
Q Consensus       362 ~~~~d~~i~~~~~~~~  377 (430)
                      +|..|.+|.||.....
T Consensus      1368 aG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1368 AGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             hccCCceEEEeecCCc
Confidence            9999999999987653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=9.8e-20  Score=151.60  Aligned_cols=280  Identities=12%  Similarity=0.096  Sum_probs=192.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .+++++-..|.|++||..++     +.+..|.+++..+..+.|.-.+.|.  .+.+++.||+|++||++.......+..-
T Consensus        41 ~~vav~lSngsv~lyd~~tg-----~~l~~fk~~~~~~N~vrf~~~ds~h--~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG-----QLLEEFKGPPATTNGVRFISCDSPH--GVISCSSDGTVRLWDIRSQAESARISWT  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccch-----hhhheecCCCCcccceEEecCCCCC--eeEEeccCCeEEEEEeecchhhhheecc
Confidence            45888999999999999998     8899999999988888888765554  5899999999999999876655544321


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc----CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~  170 (430)
                      ..    + ..++.++..-- ..       +.+..+++    +-.+.+|++.....       .++.|.-.|...|+++.|
T Consensus       114 ~~----~-~~~f~~ld~nc-k~-------~ii~~GtE~~~s~A~v~lwDvR~~qq-------~l~~~~eSH~DDVT~lrF  173 (376)
T KOG1188|consen  114 QQ----S-GTPFICLDLNC-KK-------NIIACGTELTRSDASVVLWDVRSEQQ-------LLRQLNESHNDDVTQLRF  173 (376)
T ss_pred             CC----C-CCcceEeeccC-cC-------CeEEeccccccCceEEEEEEeccccc-------hhhhhhhhccCcceeEEe
Confidence            00    0 12333222211 11       24444432    44688999875543       588888889999999999


Q ss_pred             cC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc
Q 014154          171 DI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (430)
Q Consensus       171 ~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  249 (430)
                      +| +.++|++|+.||-|.+||++.....-.+..      .+.+...|.++.|+ ++.-..|.+-+...+..+|++..+..
T Consensus       174 HP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~------viN~~sSI~~igw~-~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  174 HPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH------VINHGSSIHLIGWL-SKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             cCCCCCeEEeecccceEEeeecCCCcchhhHHH------hhcccceeeeeeee-cCCcceEEEEEccCceeEEEccCCCh
Confidence            99 568999999999999999975422111100      11223669999996 45445788889999999999998653


Q ss_pred             ceEEEeecC-------------CCeEEEEecCCCCEEEEEeC-CCcEEEEEcc---C---CeEEeeeeCCCCCCeEEEEe
Q 014154          250 PVMSFDFRE-------------TPIKAVAEEPDSFNIYIGNG-SGDLASVDIR---T---GKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       250 ~~~~~~~~~-------------~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~---~---~~~~~~~~~~~~~~v~~i~~  309 (430)
                       ...+....             .-|.+. ...+..++++++. .|...++-+.   +   .+.+..+.++|..-|+++.|
T Consensus       247 -~~~~~~~~~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~  324 (376)
T KOG1188|consen  247 -ETWLENPDVSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILF  324 (376)
T ss_pred             -hhcccCccchhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhh
Confidence             33322210             011111 1123345555444 5666665433   2   34566777766888999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEEC
Q 014154          310 HPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       310 ~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      ...+.++.|||+||.+.+|..
T Consensus       325 ~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  325 DVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             hcccceeeccCCCceEEEEec
Confidence            988999999999999999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=2.8e-19  Score=148.09  Aligned_cols=301  Identities=12%  Similarity=0.061  Sum_probs=203.6

Q ss_pred             CCCCCcceeeeee-cCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154           47 DPHSSNCVLAASI-DDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (430)
Q Consensus        47 ~~~~~~~~~~~~~-~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  125 (430)
                      .|..++..++|.. .+.-+-+.+|+.+. ..+.+|.....--+..++.....  ...+.-.++.-.++....+     ..
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~--d~~Esfytcsw~yd~~~~~-----p~  107 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADE--DHDESFYTCSWSYDSNTGN-----PF  107 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCC--CCCcceEEEEEEecCCCCC-----ee
Confidence            4677777777763 22222245555543 67888887533323333332111  1112222222223332212     57


Q ss_pred             EEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (430)
Q Consensus       126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  204 (430)
                      +++++.-|.++|.++....         +.-.-..|+..|..+.++|. .+++++++.|..|++|++++..++..+.+..
T Consensus       108 la~~G~~GvIrVid~~~~~---------~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~e  178 (385)
T KOG1034|consen  108 LAAGGYLGVIRVIDVVSGQ---------CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVE  178 (385)
T ss_pred             EEeecceeEEEEEecchhh---------hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccc
Confidence            7888888889998875432         22233478999999999995 5789999999999999999999998877644


Q ss_pred             CCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc--------------------------ce-EEEeec
Q 014154          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR--------------------------PV-MSFDFR  257 (430)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------------------~~-~~~~~~  257 (430)
                      .      |...|.++.|  +.++.+|++++.|.+|++|++...+-                          |. .+-..|
T Consensus       179 g------HrdeVLSvD~--~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH  250 (385)
T KOG1034|consen  179 G------HRDEVLSVDF--SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH  250 (385)
T ss_pred             c------ccCcEEEEEE--cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence            3      3478999999  89999999999999999999983210                          00 022335


Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEEc-cCC-------------eEEeeeeCCCCCCeEEE--EecCCCCeEEEEeC
Q 014154          258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDI-RTG-------------KLLGCFIGKCSGSIRSI--ARHPTLPIIASCGL  321 (430)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~-~~~-------------~~~~~~~~~~~~~v~~i--~~~~~~~~l~s~~~  321 (430)
                      ...|.|+.|-  |.++++-+.++.|..|-. +-.             ..+.++.-. ...|+-+  +|.|-+++||.|..
T Consensus       251 rnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  251 RNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             cchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC-ccceEEEEEeecHHHHHHhhccC
Confidence            5666677775  569999999999999976 211             123333332 3445544  55677889999999


Q ss_pred             CCcEEEEECCCCceeeEEE-eeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          322 DSYLRFWDIKTRQLLSAVF-LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       322 dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      .|.|++||++...+...-. ........|...+|+.||.+ +...+|++|.-|+.-
T Consensus       328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999999999876632211 22334566899999999999 899999999988763

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.85  E-value=5e-19  Score=158.71  Aligned_cols=161  Identities=17%  Similarity=0.171  Sum_probs=129.0

Q ss_pred             CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC------cceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEE
Q 014154          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASV  285 (430)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iw  285 (430)
                      ...|+.+.|. +-|...|++++.||.|++|.+..+.      .+-..+..|...|+++.|+|-. ..|++++.|-+|++|
T Consensus       627 gt~vtDl~Wd-PFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW  705 (1012)
T KOG1445|consen  627 GTLVTDLHWD-PFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW  705 (1012)
T ss_pred             CceeeecccC-CCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence            3568899995 3477899999999999999987532      3556788999999999999953 688999999999999


Q ss_pred             EccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce-eeEEEeeccccceEEeeeccccccc-ccc
Q 014154          286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFADKEVA-NAA  363 (430)
Q Consensus       286 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~-~~~  363 (430)
                      |+++++....+.+| ...|..++|||+|+.+++.+.||+|+||+.++++. ++.  -.+..+..--.+.|.-||++ ++.
T Consensus       706 Dl~~~~~~~~l~gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E--g~gpvgtRgARi~wacdgr~viv~  782 (1012)
T KOG1445|consen  706 DLANAKLYSRLVGH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE--GKGPVGTRGARILWACDGRIVIVV  782 (1012)
T ss_pred             ehhhhhhhheeccC-cCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc--CCCCccCcceeEEEEecCcEEEEe
Confidence            99999999999999 99999999999999999999999999999987653 332  33333333456778888888 555


Q ss_pred             CCC----CceEecCCCCC
Q 014154          364 ADA----PMLEIQNGNDT  377 (430)
Q Consensus       364 ~~d----~~i~~~~~~~~  377 (430)
                      +.|    ..|.+|+....
T Consensus       783 Gfdk~SeRQv~~Y~Aq~l  800 (1012)
T KOG1445|consen  783 GFDKSSERQVQMYDAQTL  800 (1012)
T ss_pred             cccccchhhhhhhhhhhc
Confidence            443    46777776543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=5.1e-19  Score=144.12  Aligned_cols=233  Identities=16%  Similarity=0.160  Sum_probs=170.8

Q ss_pred             eeEEEEeeecCcc-ccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-eEeeCCCCCCCCCCc
Q 014154          134 KASMRSIEVTKVS-AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIF  211 (430)
Q Consensus       134 ~~~v~~~~~~~~~-~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~  211 (430)
                      ...||.+...-.. ....-..+...+..+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+......    .
T Consensus        94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~----e  168 (370)
T KOG1007|consen   94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA----E  168 (370)
T ss_pred             eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc----c
Confidence            3568877544321 11122344445544556899999999999998766 77999999987665 3333322111    1


Q ss_pred             CCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccCC
Q 014154          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG  290 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~  290 (430)
                      +....++.+|.|+.+++.+++ ..|+++..||+++..+....-..|...|..+.|+|+.+ +|++++.||.|+|||.|.-
T Consensus       169 ~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t  247 (370)
T KOG1007|consen  169 MRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT  247 (370)
T ss_pred             ccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence            235577888976668888887 56899999999997775666677888999999999874 6678889999999999965


Q ss_pred             -eEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCc-----------------------------eeeEE
Q 014154          291 -KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQ-----------------------------LLSAV  339 (430)
Q Consensus       291 -~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~-----------------------------~~~~~  339 (430)
                       .++.++.+| ...|.++.|+|.. ++|+++|.|..|.+|...+-.                             .+.+ 
T Consensus       248 k~pv~el~~H-sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t-  325 (370)
T KOG1007|consen  248 KFPVQELPGH-SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET-  325 (370)
T ss_pred             CccccccCCC-ceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc-
Confidence             468899998 9999999999965 678999999999999763211                             0112 


Q ss_pred             EeeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154          340 FLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND  376 (430)
Q Consensus       340 ~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~  376 (430)
                       +..| ...|++++||.-..+  ++-+.||.+.|=..+.
T Consensus       326 -ydeh-EDSVY~~aWSsadPWiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  326 -YDEH-EDSVYALAWSSADPWIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             -cccc-ccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence             3345 445799999998877  7788999998866543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=5.1e-19  Score=147.36  Aligned_cols=282  Identities=15%  Similarity=0.187  Sum_probs=195.1

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      ..+|++...|.|++||..+++.+..|+++.        ..+..+.+.+....      ..+++|+.||++++|++.....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~--------~~~N~vrf~~~ds~------h~v~s~ssDG~Vr~wD~Rs~~e  106 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP--------ATTNGVRFISCDSP------HGVISCSSDGTVRLWDIRSQAE  106 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCC--------CcccceEEecCCCC------CeeEEeccCCeEEEEEeecchh
Confidence            458999999999999999999999988742        24455677664321      4789999999999999875532


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC----CCeEEEEECCCCee-eEeeCCCCCCCCCCcCCcceeEEE
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTSAA  220 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~  220 (430)
                            .....|.-..+.+..+++.+.+++.+++|+.    +-.|.+||++..+. +..+..        .|.+.|+++.
T Consensus       107 ------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e--------SH~DDVT~lr  172 (376)
T KOG1188|consen  107 ------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE--------SHNDDVTQLR  172 (376)
T ss_pred             ------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh--------hccCcceeEE
Confidence                  2334444333456778888778888888764    56799999987665 443332        1347899999


Q ss_pred             EeecCCCCEEEEEeCCCcEEEEECCCCCc--ceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFI  297 (430)
Q Consensus       221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~  297 (430)
                      |+ +.+.++|++|+.||.|.|||+.....  ++...-.|...|.++.|..++ +.|++-+......+|++..+.....+.
T Consensus       173 FH-P~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~  251 (376)
T KOG1188|consen  173 FH-PSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE  251 (376)
T ss_pred             ec-CCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence            97 45778999999999999999986422  233333466789999998776 568888899999999999887654443


Q ss_pred             CC-----------CCCCeEEEEecCCCCeEEEEeC-CCcEEEEECC---CCceeeEE-EeeccccceEEeeeccccccc-
Q 014154          298 GK-----------CSGSIRSIARHPTLPIIASCGL-DSYLRFWDIK---TRQLLSAV-FLKQHLNEVVFDSAFADKEVA-  360 (430)
Q Consensus       298 ~~-----------~~~~v~~i~~~~~~~~l~s~~~-dg~i~iwd~~---~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~-  360 (430)
                      ..           ....+.......+...++.++. -+...++-+.   ++...... .+.++...+|.++.|...+.+ 
T Consensus       252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l  331 (376)
T KOG1188|consen  252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVL  331 (376)
T ss_pred             CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccccee
Confidence            21           0011111111223445555554 4555555433   33322211 156655788899999887777 


Q ss_pred             cccCCCCceEecCCCC
Q 014154          361 NAAADAPMLEIQNGND  376 (430)
Q Consensus       361 ~~~~~d~~i~~~~~~~  376 (430)
                      .+|+.||.+.+|..+.
T Consensus       332 ~TGGEDG~l~~Wk~~d  347 (376)
T KOG1188|consen  332 YTGGEDGLLQAWKVED  347 (376)
T ss_pred             eccCCCceEEEEecCC
Confidence            9999999999998733

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=5.2e-19  Score=146.58  Aligned_cols=292  Identities=14%  Similarity=0.200  Sum_probs=204.4

Q ss_pred             CCCCcceeeecCCCceEEEEccCCCCCcceeeeecCC--CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154           11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus        11 ~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      +|..-.+++......+.+++....  +-..+++.+..  |+..-.-.+++++-.....+||+|+.-|.|+|.|+.+++..
T Consensus        51 ~~~e~~vfatvG~~rvtiy~c~~d--~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~  128 (385)
T KOG1034|consen   51 GCDEPQVFATVGGNRVTIYECPGD--GGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCS  128 (385)
T ss_pred             CCCCCceEEEeCCcEEEEEEECCc--cceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhc
Confidence            343333333333467889988763  22345556554  44454445566544433578999999999999999999988


Q ss_pred             ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee--ecCCCceE
Q 014154           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIA  166 (430)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~  166 (430)
                      ..+.+|        ...|..+.+.+...       +.+++++.|+.+++|++....        .|.++-  ..|...|.
T Consensus       129 ~~~~gh--------G~sINeik~~p~~~-------qlvls~SkD~svRlwnI~~~~--------Cv~VfGG~egHrdeVL  185 (385)
T KOG1034|consen  129 KNYRGH--------GGSINEIKFHPDRP-------QLVLSASKDHSVRLWNIQTDV--------CVAVFGGVEGHRDEVL  185 (385)
T ss_pred             cceecc--------CccchhhhcCCCCC-------cEEEEecCCceEEEEeccCCe--------EEEEecccccccCcEE
Confidence            887764        56888888888776       799999999999999997543        444443  25778999


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeee------EeeCC---------CCCCC----CCCcCCcceeEEEEeecCCC
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKI------WTAKP---------PPKNS----LGIFTPTWFTSAAFLSIDDH  227 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------~~~~~---------~~~~~----~~~~~~~~v~~~~~~~~~~~  227 (430)
                      ++.|++++.+|++++.|.+|.+|++...+..      ..+..         ...+.    ..--|...|.|+.|    -|
T Consensus       186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw----~g  261 (385)
T KOG1034|consen  186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW----FG  261 (385)
T ss_pred             EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH----Hh
Confidence            9999999999999999999999999843211      01100         00000    11124567888888    36


Q ss_pred             CEEEEEeCCCcEEEEECCCCCc-------------ceEEEeecCCCeEEEE--ecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154          228 RKFVAGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVA--EEPDSFNIYIGNGSGDLASVDIRTGKL  292 (430)
Q Consensus       228 ~~l~s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~i~~~~--~sp~~~~l~~~~~d~~i~iwd~~~~~~  292 (430)
                      +++++-+.++.|..|.....+.             .+..++-....|.-+.  |.|-++.|+.|...|.|.+||++...+
T Consensus       262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep  341 (385)
T KOG1034|consen  262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP  341 (385)
T ss_pred             hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence            8999999999999998822111             1223333344555554  466789999999999999999997665


Q ss_pred             E--eeee-CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          293 L--GCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       293 ~--~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      .  .++. ......|...+|+.|+.+|+....|++|.-||..
T Consensus       342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            2  1111 1124679999999999999999999999999853

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.84  E-value=2.4e-19  Score=144.16  Aligned_cols=263  Identities=14%  Similarity=0.118  Sum_probs=180.2

Q ss_pred             ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      .+..|...+.++.|.-  +   .+|.+|..-|.|++|++.+.+....+..+       +...|..++..+.         
T Consensus         9 vLRp~~~~v~s~~fqa--~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~-------g~~~it~lq~~p~---------   67 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQA--N---ERLMSGLSVGIVKMWVLQTERDLPLIRLF-------GRLFITNLQSIPN---------   67 (323)
T ss_pred             Eeccccchheehhhcc--c---hhhhcccccceEEEEEeecCccchhhhhh-------ccceeeceeecCC---------
Confidence            4557777755554433  2   35999999999999999988877777643       2345655555543         


Q ss_pred             ceEEEEccCCeeEEEEeeecCc---------------cccCCCcc--------------------------eEEeeec--
Q 014154          124 RTLLTCTTKGKASMRSIEVTKV---------------SAESSCST--------------------------VKSWNVC--  160 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~---------------~~~~~~~~--------------------------i~~~~~~--  160 (430)
                      +.+.+-..|..+.+|.+.++.-               .+-.....                          +++-+..  
T Consensus        68 d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~  147 (323)
T KOG0322|consen   68 DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSER  147 (323)
T ss_pred             cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhc
Confidence            3666777777777777766321               00000000                          0000000  


Q ss_pred             -CCCceEEEEEcC-C--CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCC-CCcCCcceeEEEEeecCCCCEEEEEeC
Q 014154          161 -ASGTIAFSKVDI-S--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (430)
Q Consensus       161 -~~~~i~~~~~~~-~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~  235 (430)
                       ..+.+.|..+.. .  .-+|++|-.+|.+.+||+.++..+..+........ -..|..+|.++.|  .+.-..=++|+.
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldy--as~~~rGisgga  225 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDY--ASSCDRGISGGA  225 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeee--chhhcCCcCCCc
Confidence             013355555332 2  23456778899999999999866555544322221 2234578999999  444445577888


Q ss_pred             CCcEEEEECCCC--CcceE-EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          236 DHQVRLYDTSAQ--RRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       236 dg~i~iwd~~~~--~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      +..+..|.++..  ..++. .+....-.|..+.+-||++.+++++.|+.||+|..++.+++..++-| .+.|++++|+|+
T Consensus       226 ~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH-sagvn~vAfspd  304 (323)
T KOG0322|consen  226 DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH-SAGVNAVAFSPD  304 (323)
T ss_pred             cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhh-hcceeEEEeCCC
Confidence            888999988753  11111 22223356888999999999999999999999999999999999998 899999999999


Q ss_pred             CCeEEEEeCCCcEEEEEC
Q 014154          313 LPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~  330 (430)
                      ..++|.++.|+.|.+|++
T Consensus       305 ~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  305 CELMAAASKDARISLWKL  322 (323)
T ss_pred             CchhhhccCCceEEeeec
Confidence            999999999999999986

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=9.8e-19  Score=165.27  Aligned_cols=286  Identities=14%  Similarity=0.167  Sum_probs=191.3

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCC-CCcceeeeeecCCCCCceeEEeecCCeEEEecCC-CC-cccceee
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NG-DLRVAIS   92 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~-~~~~~~~   92 (430)
                      .++++++.-.|+|||.+.+     +++..|..+. ....+..+.+-+..|-.+|++|+.||.|+||+-- +. +......
T Consensus      1078 ~i~~ad~r~~i~vwd~e~~-----~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT 1152 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKG-----RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVT 1152 (1387)
T ss_pred             eeEEcCCcceEEEEecccC-----ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEE
Confidence            3677887889999999998     6666665432 2233555665556677899999999999999743 22 1111122


Q ss_pred             ccCCC-CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee--cCCCceEEEE
Q 014154           93 NAGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSK  169 (430)
Q Consensus        93 ~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~--~~~~~i~~~~  169 (430)
                      +..++ +..+.......+.-|....       +.+++++.-..++||+....          ..+-++  ..+..++++.
T Consensus      1153 aw~~Ls~~~~~~r~~~~v~dWqQ~~-------G~Ll~tGd~r~IRIWDa~~E----------~~~~diP~~s~t~vTaLS 1215 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTGLVVDWQQQS-------GHLLVTGDVRSIRIWDAHKE----------QVVADIPYGSSTLVTALS 1215 (1387)
T ss_pred             eeccccccCccCCCCCeeeehhhhC-------CeEEecCCeeEEEEEecccc----------eeEeecccCCCccceeec
Confidence            21111 1112222232355565555       77887777778888886532          222222  2334566655


Q ss_pred             EcC-CCCEEEEEeCCCeEEEEECCCCe---eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEEC
Q 014154          170 VDI-SEKFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDT  244 (430)
Q Consensus       170 ~~~-~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~  244 (430)
                      -+. .|+.+++|..||.|++||.+...   .+...+.|...       ..|..+.+  .+.|. .|++|+.+|.|++||+
T Consensus      1216 ~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~-------~~Iv~~sl--q~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1216 ADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV-------EPIVHLSL--QRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred             ccccCCceEEEeecCCceEEeecccCCccccceeecccCCc-------ccceeEEe--ecCCCcceeeeccCCeEEEEec
Confidence            433 57999999999999999987532   34444444311       23888888  55554 5999999999999999


Q ss_pred             CCC-CcceEEEeecC---CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee------CCCCCCeEEEEecCCCC
Q 014154          245 SAQ-RRPVMSFDFRE---TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSIARHPTLP  314 (430)
Q Consensus       245 ~~~-~~~~~~~~~~~---~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~v~~i~~~~~~~  314 (430)
                      +.. ......+..|-   +..+++..++....+++|+. +.|.||++. |+.+..++      +...+.+.+++|||...
T Consensus      1287 R~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1287 RMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred             ccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhH
Confidence            973 22223333332   35999999999999999988 999999984 44443333      22245789999999999


Q ss_pred             eEEEEeCCCcEEEEECCCCc
Q 014154          315 IIASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       315 ~l~s~~~dg~i~iwd~~~~~  334 (430)
                      +++.|+.|.+|.||.....+
T Consensus      1365 llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1365 LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhhhccCCceEEEeecCCcC
Confidence            99999999999999876544

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=6.8e-20  Score=174.84  Aligned_cols=239  Identities=14%  Similarity=0.228  Sum_probs=187.2

Q ss_pred             eeEEeecCCeEEEecCCCC---cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeec
Q 014154           67 LLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~  143 (430)
                      +||.|..||.|.+||...-   .....+..     +.-|.+.+.++.+.....       +.+++|..+|.+.||++...
T Consensus        82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~-----~~~h~G~V~gLDfN~~q~-------nlLASGa~~geI~iWDlnn~  149 (1049)
T KOG0307|consen   82 LIAGGLEDGNIVLYDPASIIANASEEVLAT-----KSKHTGPVLGLDFNPFQG-------NLLASGADDGEILIWDLNKP  149 (1049)
T ss_pred             eeeccccCCceEEecchhhccCcchHHHhh-----hcccCCceeeeeccccCC-------ceeeccCCCCcEEEeccCCc
Confidence            5888999999999998642   21111111     334567888888777665       68999999999999998764


Q ss_pred             CccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154          144 KVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (430)
Q Consensus       144 ~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (430)
                      .....  -+     .......|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+...       ..+..++| 
T Consensus       150 ~tP~~--~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~-------~~~S~l~W-  214 (1049)
T KOG0307|consen  150 ETPFT--PG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR-------MHCSVLAW-  214 (1049)
T ss_pred             CCCCC--CC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc-------cceeeeee-
Confidence            32110  00     2234578999999874 567888999999999999988777766655432       34778999 


Q ss_pred             ecCCC-CEEEEEeCCC---cEEEEECCCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154          223 SIDDH-RKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFI  297 (430)
Q Consensus       223 ~~~~~-~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~  297 (430)
                       +|+. ..|++++.|.   .|.+||+|....+++.+++|...|.++.|++.+ .+|++++.|+.|.+|+..+++.+..+.
T Consensus       215 -hP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  215 -HPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             -CCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence             4544 4666666554   599999998888999999999999999999877 899999999999999999999999999


Q ss_pred             CCCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECCCCc
Q 014154          298 GKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       298 ~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~~~  334 (430)
                      .. ..++..+.|+|... .++.++.||.|.||.+.+..
T Consensus       294 ~~-~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  294 AQ-GNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CC-CcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            86 88999999999776 78899999999999987644

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=6.4e-18  Score=134.51  Aligned_cols=275  Identities=17%  Similarity=0.132  Sum_probs=188.0

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccce-eec-cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEE
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVA-ISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRS  139 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~  139 (430)
                      +|.+++|++|..+|.|.+..+..-..-.. -++ ..-+.+.+|+.++..+.+.+          ..+++++. |.++-|.
T Consensus        19 sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d----------~~Lls~gd-G~V~gw~   87 (325)
T KOG0649|consen   19 SPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD----------DFLLSGGD-GLVYGWE   87 (325)
T ss_pred             CCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh----------hheeeccC-ceEEEee
Confidence            78889999999999999998853211111 011 11122456778888887774          36666555 7777665


Q ss_pred             eeecCccccCCCcceEEeeecC--------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154          140 IEVTKVSAESSCSTVKSWNVCA--------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (430)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  211 (430)
                      -.....    ..+.-++|....        -..|+++.+.|..+-+++++.|+.++.||+++|+..+++++|.       
T Consensus        88 W~E~~e----s~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHt-------  156 (325)
T KOG0649|consen   88 WNEEEE----SLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHT-------  156 (325)
T ss_pred             ehhhhh----hccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCc-------
Confidence            433221    112333444321        2468899999999988889999999999999999999999987       


Q ss_pred             CCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee---------c-CCCeEEEEecCCCCEEEEEeCCCc
Q 014154          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF---------R-ETPIKAVAEEPDSFNIYIGNGSGD  281 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------~-~~~i~~~~~sp~~~~l~~~~~d~~  281 (430)
                        +.|.++.-  -.....+++|++||++++||+++++. +..+..         | ...|.+++.+  ..+|++|+ .-.
T Consensus       157 --DYvH~vv~--R~~~~qilsG~EDGtvRvWd~kt~k~-v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~  228 (325)
T KOG0649|consen  157 --DYVHSVVG--RNANGQILSGAEDGTVRVWDTKTQKH-VSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPK  228 (325)
T ss_pred             --ceeeeeee--cccCcceeecCCCccEEEEeccccce-eEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCc
Confidence              88988887  34456799999999999999999764 554432         1 2356777765  44888775 456


Q ss_pred             EEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc-cc
Q 014154          282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE-VA  360 (430)
Q Consensus       282 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~  360 (430)
                      +.+|.++..++...|.-  .+++..+.|  ....+++++.-+.|.-|.+. |.+...+... +  ...++..|+..- ++
T Consensus       229 lslwhLrsse~t~vfpi--pa~v~~v~F--~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~-s--~~c~s~s~~~~p~k~  300 (325)
T KOG0649|consen  229 LSLWHLRSSESTCVFPI--PARVHLVDF--VDDCVLIGGEGNHVQSYTLN-GVLQANIPVE-S--TACYSASWQTSPIKF  300 (325)
T ss_pred             eeEEeccCCCceEEEec--ccceeEeee--ecceEEEeccccceeeeeec-cEEEEeccCC-c--cceeeecccCCceEE
Confidence            99999999998888875  578889999  44568888888889999874 5544443222 2  223444444332 22


Q ss_pred             -cccCCCCceEecCC
Q 014154          361 -NAAADAPMLEIQNG  374 (430)
Q Consensus       361 -~~~~~d~~i~~~~~  374 (430)
                       -.++..+.+.|+..
T Consensus       301 ~s~ag~s~~~~i~~~  315 (325)
T KOG0649|consen  301 ISIAGFSNKLHILKD  315 (325)
T ss_pred             EEecccceeeeeeec
Confidence             44556677777643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.82  E-value=2.2e-18  Score=146.25  Aligned_cols=204  Identities=8%  Similarity=0.080  Sum_probs=162.4

Q ss_pred             cCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee-------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          160 CASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       160 ~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      .|.++|..++|+| +.+.||+|+.|.+|.||.+..+..       +..+.+|.         ..|-.++|++ -..+.|+
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~---------rrVg~V~wHP-tA~NVLl  148 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ---------RRVGLVQWHP-TAPNVLL  148 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecc---------eeEEEEeecc-cchhhHh
Confidence            6789999999999 778899999999999999976433       33444443         6788999963 2456899


Q ss_pred             EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      +++.|..|.+|++.++.. +..+. |...|.++.|+.||.+|++.+.|..|+|||.++++.+.+-.+|....-..+.|-.
T Consensus       149 sag~Dn~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~  226 (472)
T KOG0303|consen  149 SAGSDNTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA  226 (472)
T ss_pred             hccCCceEEEEeccCCce-eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec
Confidence            999999999999999875 55566 9999999999999999999999999999999999999888888556677788989


Q ss_pred             CCCeEEEE---eCCCcEEEEECCCCce-eeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154          312 TLPIIASC---GLDSYLRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       312 ~~~~l~s~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~  377 (430)
                      ++.++.||   ..+..+-+||..+-+. +....+..  +..|.-.-|.+|..+  ++|-.|+.|+.|+....
T Consensus       227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt--SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT--SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             cCceeeeccccccccceeccCcccccCcceeEEecc--CCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence            99855444   2567899999876433 22222333  334566678888876  88999999999988653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=6e-18  Score=152.69  Aligned_cols=273  Identities=11%  Similarity=0.109  Sum_probs=207.5

Q ss_pred             ceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (430)
Q Consensus        53 ~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (430)
                      ++-.++|  .|||..|+.+. +..+.+||..+|..+.++++|        .+.+.++.+....        ..+++|+.|
T Consensus        14 ci~d~af--kPDGsqL~lAA-g~rlliyD~ndG~llqtLKgH--------KDtVycVAys~dG--------krFASG~aD   74 (1081)
T KOG1538|consen   14 CINDIAF--KPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGH--------KDTVYCVAYAKDG--------KRFASGSAD   74 (1081)
T ss_pred             chheeEE--CCCCceEEEec-CCEEEEEeCCCcccccccccc--------cceEEEEEEccCC--------ceeccCCCc
Confidence            3445566  77887777764 467999999999999999885        4467766665544        489999999


Q ss_pred             CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (430)
Q Consensus       133 g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  212 (430)
                      ..+.+|+-...        |   +....|+..|.|+.|+|-...|++++.+ ..-+|..+....... +.          
T Consensus        75 K~VI~W~~klE--------G---~LkYSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~-ks----------  131 (1081)
T KOG1538|consen   75 KSVIIWTSKLE--------G---ILKYSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH-KS----------  131 (1081)
T ss_pred             eeEEEeccccc--------c---eeeeccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh-hh----------
Confidence            99999975422        2   3445788999999999999999998876 677888764332211 11          


Q ss_pred             CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE--eecCCCeEEEEecCCC-----CEEEEEeCCCcEEEE
Q 014154          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDS-----FNIYIGNGSGDLASV  285 (430)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~sp~~-----~~l~~~~~d~~i~iw  285 (430)
                      ...+.+++|  ..||++|+.|-.+|+|.+-+-....+ +..-  .+.+.+|.+++|+|..     ..+++.....++.+|
T Consensus       132 s~R~~~CsW--tnDGqylalG~~nGTIsiRNk~gEek-~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy  208 (1081)
T KOG1538|consen  132 SSRIICCSW--TNDGQYLALGMFNGTISIRNKNGEEK-VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFY  208 (1081)
T ss_pred             heeEEEeee--cCCCcEEEEeccCceEEeecCCCCcc-eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEE
Confidence            166889999  89999999999999999987654332 2222  2356799999999964     577788888888888


Q ss_pred             EccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC
Q 014154          286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA  364 (430)
Q Consensus       286 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~  364 (430)
                      .+ +|+.+..-+.- .-...|+.+.++|.+++.||.|+.+.+|. +.|-.+.++   +..+..||.++..|+++. +.|.
T Consensus       209 ~L-sG~~Igk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTv---g~~D~WIWtV~~~PNsQ~v~~GC  282 (1081)
T KOG1538|consen  209 QL-SGKQIGKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTV---GEQDSWIWTVQAKPNSQYVVVGC  282 (1081)
T ss_pred             Ee-cceeecccccC-CCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeec---cccceeEEEEEEccCCceEEEEE
Confidence            87 56665544333 34567899999999999999999999996 457777763   346889999999999999 8899


Q ss_pred             CCCceEecCCCC
Q 014154          365 DAPMLEIQNGND  376 (430)
Q Consensus       365 ~d~~i~~~~~~~  376 (430)
                      .||+|..|+...
T Consensus       283 qDGTiACyNl~f  294 (1081)
T KOG1538|consen  283 QDGTIACYNLIF  294 (1081)
T ss_pred             ccCeeehhhhHH
Confidence            999999998643

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.80  E-value=1.7e-15  Score=142.39  Aligned_cols=315  Identities=18%  Similarity=0.298  Sum_probs=220.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCc-eeEEe-ecCCeEEEecCCC-Cccccee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVA-RKNGLTDILNPLN-GDLRVAI   91 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g-~~dg~i~iwd~~~-~~~~~~~   91 (430)
                      ..+++++.|+.+.+|+...+.    ..+..+..... ..+..+... .+++. +++.. ..|+.+.+|+... ......+
T Consensus        78 ~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  151 (466)
T COG2319          78 ELLLSGSSDGTIKLWDLDNGE----KLIKSLEGLHD-SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTL  151 (466)
T ss_pred             cEEEEecCCCcEEEEEcCCCc----eeEEEEeccCC-CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEE
Confidence            346667789999999999861    14555555332 224444444 55666 45553 4499999999976 5555555


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc-CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~  170 (430)
                      ..+        ...+..+.+.+...        .++.+.. ++.+.+|++....        .+.... .|...+.++++
T Consensus       152 ~~~--------~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~v~~~~~  206 (466)
T COG2319         152 EGH--------SESVTSLAFSPDGK--------LLASGSSLDGTIKLWDLRTGK--------PLSTLA-GHTDPVSSLAF  206 (466)
T ss_pred             ecC--------cccEEEEEECCCCC--------EEEecCCCCCceEEEEcCCCc--------eEEeec-cCCCceEEEEE
Confidence            442        33555566655432        5666664 9999999976422        333333 36789999999


Q ss_pred             cCCCC-EEEEEeCCCeEEEEECCCCeeeE-eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154          171 DISEK-FSLFGGKGVEVNVWDLDKCEKIW-TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       171 ~~~~~-~l~~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  248 (430)
                      +|++. .+++++.|+.|++||...+.... .+..+.         ... ...|  ++++.++++++.|+.+++|++....
T Consensus       207 ~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~---------~~~-~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         207 SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS---------DSV-VSSF--SPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC---------cce-eEeE--CCCCCEEEEecCCCcEEEeeecCCC
Confidence            99888 55555999999999988776666 455543         222 2266  7888888999999999999999755


Q ss_pred             cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee--CCCCCCeEEEEecCCCCeEEEE-eCCCcE
Q 014154          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI--GKCSGSIRSIARHPTLPIIASC-GLDSYL  325 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~-~~dg~i  325 (430)
                      ..+..+..|...+.++.|+|++..+++++.|+.+.+||+.+........  .| ...+..+.|.+++..++.+ ..|+.+
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~  353 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDGSLLVSGGSDDGTI  353 (466)
T ss_pred             cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCCCEEEEeecCCCcE
Confidence            4344446788899999999988888889999999999999888766665  66 6679999994343455555 688999


Q ss_pred             EEEECCCCceeeEEEeeccccceEEeeeccccccc-cc-cCCCCceEecCCCCCc
Q 014154          326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NA-AADAPMLEIQNGNDTQ  378 (430)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~-~~~d~~i~~~~~~~~~  378 (430)
                      .+|++........  .... .. +..+.+++ ... .. +..++.+.+|+.....
T Consensus       354 ~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  403 (466)
T COG2319         354 RLWDLRTGKPLKT--LEGH-SN-VLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGS  403 (466)
T ss_pred             EeeecCCCceeEE--ecCC-ce-EEEEEECC-CCCEEEEecCCCceEEEecccCe
Confidence            9999988772222  2222 11 68888988 633 33 5889999999987653

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=1.1e-17  Score=138.56  Aligned_cols=275  Identities=15%  Similarity=0.155  Sum_probs=198.5

Q ss_pred             cceeeecCCCceEEEEccCCC-------CCcceeeeecCCCCCCcceeeeeec-----CCCCCceeEEeecCCeEEEecC
Q 014154           15 LRALTFDSLGLIKVIEARGEH-------GGVPKVVERWGDPHSSNCVLAASID-----DSQNDPLLAVARKNGLTDILNP   82 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~g~~l~~g~~dg~i~iwd~   82 (430)
                      ..+++-++|..+.+|++...-       ....+....+.-. ...++...+|-     ..|+..++|+.+.+.-|++||.
T Consensus        62 SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wda  140 (406)
T KOG2919|consen   62 SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDA  140 (406)
T ss_pred             ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCccceeeeccccCceeeeec
Confidence            567888999999999986421       0011111112211 22334555542     5688899999999999999999


Q ss_pred             CCCcccceeeccCCCCCCCCCCceE---EEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEE-e-
Q 014154           83 LNGDLRVAISNAGDSGAQPEDDGIV---GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-W-  157 (430)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~-~-  157 (430)
                      -+|+...++.++...      +.++   ++.+.+.         +.-+-++....++|+++.....     +-.+.. . 
T Consensus       141 ftG~lraSy~~ydh~------de~taAhsL~Fs~D---------GeqlfaGykrcirvFdt~RpGr-----~c~vy~t~~  200 (406)
T KOG2919|consen  141 FTGKLRASYRAYDHQ------DEYTAAHSLQFSPD---------GEQLFAGYKRCIRVFDTSRPGR-----DCPVYTTVT  200 (406)
T ss_pred             cccccccchhhhhhH------HhhhhheeEEecCC---------CCeEeecccceEEEeeccCCCC-----CCcchhhhh
Confidence            999988887763221      1222   3444443         3444456677888888743321     111110 0 


Q ss_pred             --eecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154          158 --NVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (430)
Q Consensus       158 --~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  234 (430)
                        .....+.|.+++|+| +...++.|+....+-||.-....++..+.+|.         ..|+.+.|  .++|+.|++|+
T Consensus       201 ~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~---------gGvThL~~--~edGn~lfsGa  269 (406)
T KOG2919|consen  201 KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHG---------GGVTHLQW--CEDGNKLFSGA  269 (406)
T ss_pred             cccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccC---------CCeeeEEe--ccCcCeecccc
Confidence              112246789999999 55689999999999999988888888887766         67999999  89999999987


Q ss_pred             C-CCcEEEEECCCCCcceEEEeecCC-CeEEE--EecCCCCEEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCCeEEEEe
Q 014154          235 N-DHQVRLYDTSAQRRPVMSFDFRET-PIKAV--AEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       235 ~-dg~i~iwd~~~~~~~~~~~~~~~~-~i~~~--~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~  309 (430)
                      . |-.|..||++....++..+..|.. .-..|  ...|++++|++|+.||.|++||+.. +..+..+..+ ...++.+++
T Consensus       270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~-sd~vNgvsl  348 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNY-SDTVNGVSL  348 (406)
T ss_pred             cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccc-cccccceec
Confidence            5 678999999988888888888755 22233  4478999999999999999999998 6767777777 889999999


Q ss_pred             cCCCCeEEEEeCC
Q 014154          310 HPTLPIIASCGLD  322 (430)
Q Consensus       310 ~~~~~~l~s~~~d  322 (430)
                      +|--+++++++..
T Consensus       349 nP~mpilatssGq  361 (406)
T KOG2919|consen  349 NPIMPILATSSGQ  361 (406)
T ss_pred             CcccceeeeccCc
Confidence            9999999988754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=1.6e-17  Score=141.62  Aligned_cols=298  Identities=12%  Similarity=0.068  Sum_probs=200.1

Q ss_pred             ceeeecCCCceEEEEccCCCCC----cceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc----
Q 014154           16 RALTFDSLGLIKVIEARGEHGG----VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----   87 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~----   87 (430)
                      +++||+.|..|++|.+..+..+    .-+.+..+..|...++++.|    +|+|++||+|+.+|.|.+|-...-..    
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf----~p~gelLASg~D~g~v~lWk~~~~~~~~~d  103 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF----SPDGELLASGGDGGEVFLWKQGDVRIFDAD  103 (434)
T ss_pred             ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE----cCCcCeeeecCCCceEEEEEecCcCCcccc
Confidence            8999999999999988764321    33456778889999877766    56888999999999999997652111    


Q ss_pred             --cceeeccCC--CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154           88 --RVAISNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG  163 (430)
Q Consensus        88 --~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~  163 (430)
                        ....+..+-  .....+.+.+..+.|.+..        ..+++++.+..+.+|++....        .+.+.+ .|..
T Consensus       104 ~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~--------~~l~s~s~dns~~l~Dv~~G~--------l~~~~~-dh~~  166 (434)
T KOG1009|consen  104 TEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS--------NFLVSGSVDNSVRLWDVHAGQ--------LLAILD-DHEH  166 (434)
T ss_pred             chhhhCccceEEEEEecccccchhhhhccCCC--------ceeeeeeccceEEEEEeccce--------eEeecc-cccc
Confidence              000000000  0011234455555555544        378888888888888886543        333333 5778


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC----------CCCCCCCCCcCC----cceeEEEEeecCCCCE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK----------PPPKNSLGIFTP----TWFTSAAFLSIDDHRK  229 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~----------~~~~~~~~~~~~----~~v~~~~~~~~~~~~~  229 (430)
                      .+..++|.|.++++++-+.|...+.+.+...+.+....          ......+.+.|.    .....++|  +|+|.+
T Consensus       167 yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf--TPdG~l  244 (434)
T KOG1009|consen  167 YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF--TPDGSL  244 (434)
T ss_pred             ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc--CCCCcE
Confidence            89999999999999999988877777765433322211          111122223332    34566788  899999


Q ss_pred             EEEEeC----CC-----cEEEEECCCCCcceEEEeecCCCeEEEEecCC-----------------CCEEEEEeCCCcEE
Q 014154          230 FVAGTN----DH-----QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-----------------SFNIYIGNGSGDLA  283 (430)
Q Consensus       230 l~s~~~----dg-----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~-----------------~~~l~~~~~d~~i~  283 (430)
                      |++...    .+     ..++|+-..-.+|...+++...+...+.|+|-                 -+.+++....+.|+
T Consensus       245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svy  324 (434)
T KOG1009|consen  245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVY  324 (434)
T ss_pred             EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEE
Confidence            887532    22     33555554445566777766666666666651                 12334444566799


Q ss_pred             EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (430)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  336 (430)
                      +||.++..++.....-|-..|+.++|+++|..|+..|.||...+..++.+++-
T Consensus       325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            99999988888877666889999999999999999999999888877765543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.79  E-value=1.6e-18  Score=153.59  Aligned_cols=246  Identities=17%  Similarity=0.191  Sum_probs=173.8

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKP  202 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~  202 (430)
                      ..+++++.+|.+.+|.+...+......-.+|..|+ .|.++|.|+++.+++..+++|+.||+|+.|++....--.. ...
T Consensus       307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp  385 (577)
T KOG0642|consen  307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDP  385 (577)
T ss_pred             CeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCc
Confidence            48999999999999999554433334455777777 7899999999999999999999999999997752111100 000


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec--CCCeEEEEecCCC-CEEEEEeCC
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDS-FNIYIGNGS  279 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~sp~~-~~l~~~~~d  279 (430)
                      ......-..|.+.|..+++  ++....|++++.||++++|+..... + .++...  .+.-.++.+-... ...++...-
T Consensus       386 ~vl~~~l~Ghtdavw~l~~--s~~~~~Llscs~DgTvr~w~~~~~~-~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~  461 (577)
T KOG0642|consen  386 SVLSGTLLGHTDAVWLLAL--SSTKDRLLSCSSDGTVRLWEPTEES-P-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRF  461 (577)
T ss_pred             chhccceeccccceeeeee--cccccceeeecCCceEEeeccCCcC-c-cccCCccccCCcceEeeccchhHhhhhhccc
Confidence            0011111224477889999  6777789999999999999988644 3 233221  1233455553322 233333333


Q ss_pred             CcEEEEEccCCeEEeeeeCC------CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeee
Q 014154          280 GDLASVDIRTGKLLGCFIGK------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA  353 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  353 (430)
                      +.--++++...+.+..+...      ....+..+.++|.+.+.+++..|+.|+++|..++.+++.  ...|. ..+++++
T Consensus       462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s--~~a~~-~svtsla  538 (577)
T KOG0642|consen  462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS--MVAHK-DSVTSLA  538 (577)
T ss_pred             ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh--eeecc-ceeccee
Confidence            44445555555544444321      023577889999999999999999999999999999988  55674 4469999


Q ss_pred             ccccccc-cccCCCCceEecCCCCC
Q 014154          354 FADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       354 ~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      +.|+|.+ ++++.|+.+++|..+..
T Consensus       539 i~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  539 IDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ecCCCceEEeecCCceeehhhccch
Confidence            9999999 99999999999998664

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=5.9e-17  Score=129.05  Aligned_cols=238  Identities=14%  Similarity=0.168  Sum_probs=172.0

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEee-ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC------ee
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC------EK  196 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~------~~  196 (430)
                      ..++++...|.+.+.++..-..-+.-..+...+.. -.|.++|..++|+  ..+|++|+. |.|+-|..+..      +.
T Consensus        23 ~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~   99 (325)
T KOG0649|consen   23 QYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKR   99 (325)
T ss_pred             eEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchh
Confidence            57888999999999998644332223334444444 5788999999998  556766664 99999987542      22


Q ss_pred             eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE
Q 014154          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (430)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~  276 (430)
                      +++.+.+...  +......|+++..  .|..+-++.++.|+.++-||+.+++ ..+.+.+|+..|.++.--.....+++|
T Consensus       100 lwe~~~P~~~--~~~evPeINam~l--dP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~qilsG  174 (325)
T KOG0649|consen  100 LWEVKIPMQV--DAVEVPEINAMWL--DPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQILSG  174 (325)
T ss_pred             hhhhcCcccc--CcccCCccceeEe--ccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcceeec
Confidence            3333332211  1111245778877  6777777777899999999999976 588999999999999885556689999


Q ss_pred             eCCCcEEEEEccCCeEEeeeeCC---------CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccc
Q 014154          277 NGSGDLASVDIRTGKLLGCFIGK---------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE  347 (430)
Q Consensus       277 ~~d~~i~iwd~~~~~~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  347 (430)
                      ++||++|+||+++++++..+...         ....|-+++-  +..+|++|+. -.+.+|++++.++...+.++++   
T Consensus       175 ~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfpipa~---  248 (325)
T KOG0649|consen  175 AEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPAR---  248 (325)
T ss_pred             CCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEecccc---
Confidence            99999999999999988776532         2334555555  6668888764 4699999999999999887777   


Q ss_pred             eEEeeeccccccccccCCCCceEecCCCCC
Q 014154          348 VVFDSAFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       348 ~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                       +-.+.|- +...++++..+.+.-|..+..
T Consensus       249 -v~~v~F~-~d~vl~~G~g~~v~~~~l~Gv  276 (325)
T KOG0649|consen  249 -VHLVDFV-DDCVLIGGEGNHVQSYTLNGV  276 (325)
T ss_pred             -eeEeeee-cceEEEeccccceeeeeeccE
Confidence             4556664 344577777788888877654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.79  E-value=1.6e-15  Score=128.03  Aligned_cols=159  Identities=17%  Similarity=0.239  Sum_probs=127.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE--eCCCcE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TNDHQV  239 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i  239 (430)
                      ...|.++.++  .+.|+++-.+ .|+|||+++.+.+.++.....+.      ..+.++.+  ++.+.+|+.-  ...|.|
T Consensus        87 pt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~------~gl~AlS~--n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   87 PTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP------KGLCALSP--NNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             CCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCc------cceEeecc--CCCCceEEecCCCCCceE
Confidence            4567777774  5667766666 59999999999888876643221      22444444  6666677763  347899


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCc-EEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~  317 (430)
                      .|||+.+-+ ++..+..|.+++.+++|+++|.+||+++..|+ ||+|.+.+|+.+++|+-. ....|++++|+|++++|+
T Consensus       156 ~l~d~~nl~-~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~  234 (391)
T KOG2110|consen  156 VLFDTINLQ-PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA  234 (391)
T ss_pred             EEEEcccce-eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence            999999854 68899999999999999999999999999987 789999999999999743 235789999999999999


Q ss_pred             EEeCCCcEEEEECCC
Q 014154          318 SCGLDSYLRFWDIKT  332 (430)
Q Consensus       318 s~~~dg~i~iwd~~~  332 (430)
                      +.|..++|.||.+..
T Consensus       235 ~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  235 ASSNTETVHIFKLEK  249 (391)
T ss_pred             EecCCCeEEEEEecc
Confidence            999999999998853

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.79  E-value=1.2e-17  Score=136.17  Aligned_cols=213  Identities=14%  Similarity=0.184  Sum_probs=153.2

Q ss_pred             CCCceEEEEEcCC-CCEEEEEeCC-------CeEEEEECCCCeeeEeeC-CCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          161 ASGTIAFSKVDIS-EKFSLFGGKG-------VEVNVWDLDKCEKIWTAK-PPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       161 ~~~~i~~~~~~~~-~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      +.+.|+.++-+|- ...|+++..+       -.+.||.+.......... ......+...+...|.|+.|  .|++..++
T Consensus        62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew--~Pns~kla  139 (370)
T KOG1007|consen   62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEW--EPNSDKLA  139 (370)
T ss_pred             CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEE--cCCCCeeE
Confidence            4578999999994 4555554432       236789886432210000 00111122223357899999  78888888


Q ss_pred             EEeCCCcEEEEECCCCCcceEEEee-----cCCCeEEEEecC--CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154          232 AGTNDHQVRLYDTSAQRRPVMSFDF-----RETPIKAVAEEP--DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI  304 (430)
Q Consensus       232 s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  304 (430)
                      +-. |..|.+|++......+..+..     +....++-+|+|  +++.+++. .|+++..||+|+.++...+...|...|
T Consensus       140 sm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~v  217 (370)
T KOG1007|consen  140 SMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRV  217 (370)
T ss_pred             Eec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhccee
Confidence            754 889999999986653433322     345677888988  67777765 689999999999988888776558899


Q ss_pred             EEEEecCCCC-eEEEEeCCCcEEEEECCC-CceeeEEEeeccccceEEeeecccccc-c-cccCCCCceEecCCCCCccc
Q 014154          305 RSIARHPTLP-IIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEIQNGNDTQED  380 (430)
Q Consensus       305 ~~i~~~~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~~d~~i~~~~~~~~~~~  380 (430)
                      ..+.|+|+.+ +|++|+.||.|+|||++. ..++..  +.+| ...++++.|+|... + ++++.|..|.+|.......+
T Consensus       218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e--l~~H-sHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE  294 (370)
T KOG1007|consen  218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE--LPGH-SHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE  294 (370)
T ss_pred             eeccCCCCceEEEEEcCCCccEEEEeccCCCccccc--cCCC-ceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence            9999999875 689999999999999985 345555  7788 78899999999644 3 99999999999988765433

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=1.8e-16  Score=147.30  Aligned_cols=285  Identities=13%  Similarity=0.085  Sum_probs=190.2

Q ss_pred             CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc--ceeeccCCCCCCC
Q 014154           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--VAISNAGDSGAQP  101 (430)
Q Consensus        24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~  101 (430)
                      +.+.||++...  ..++....   ....+.++.|+..   +..+||.|..+|.|.+||+..+...  ..+.    .....
T Consensus       222 ~~~~vW~~~~p--~~Pe~~~~---~~s~v~~~~f~p~---~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls----~~~~s  289 (555)
T KOG1587|consen  222 GVLLVWSLKNP--NTPELVLE---SPSEVTCLKFCPF---DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS----ALEVS  289 (555)
T ss_pred             ceEEEEecCCC--CCceEEEe---cCCceeEEEeccC---CcceEEeeccCceEEEEEccCCCCCCCcccc----ccccc
Confidence            47999999984  33333322   2355556666652   2357888999999999999866542  1111    11235


Q ss_pred             CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEE---eeecCCCceEEEEEcC-CCCEE
Q 014154          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS---WNVCASGTIAFSKVDI-SEKFS  177 (430)
Q Consensus       102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~---~~~~~~~~i~~~~~~~-~~~~l  177 (430)
                      |..++..+.|......      ..+++++.||.+..|++..-....-........   -.......+++++|.+ +.+.+
T Consensus       290 h~~~v~~vvW~~~~~~------~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~F  363 (555)
T KOG1587|consen  290 HSEPVTAVVWLQNEHN------TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHF  363 (555)
T ss_pred             CCcCeEEEEEeccCCC------CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceE
Confidence            6678887777665431      368899999999999765332200000000000   0011234688899988 56778


Q ss_pred             EEEeCCCeEEEEECCCCeee--EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe
Q 014154          178 LFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (430)
Q Consensus       178 ~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  255 (430)
                      ++|+.+|.|.--+....+..  ..++.+.   ....|.+.|.++.+  +|=+..++..+.|.+|+||.......|+..+.
T Consensus       364 iVGTe~G~v~~~~r~g~~~~~~~~~~~~~---~~~~h~g~v~~v~~--nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~  438 (555)
T KOG1587|consen  364 IVGTEEGKVYKGCRKGYTPAPEVSYKGHS---TFITHIGPVYAVSR--NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD  438 (555)
T ss_pred             EEEcCCcEEEEEeccCCcccccccccccc---cccccCcceEeeec--CCCccceeeeeccceeEeccccCCCCcchhhh
Confidence            89999999887443222111  1122221   22334588999999  67666555555599999999884466788888


Q ss_pred             ecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCe--EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          256 FRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGK--LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       256 ~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      .+...+++++|||.. ..|+++..||.|.+||+....  ++.....+ ....+.+.|+++|++|++|...|.+.+|++..
T Consensus       439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            888889999999976 566778889999999997543  34444444 55677888999999999999999999999863

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.77  E-value=5.7e-15  Score=138.82  Aligned_cols=294  Identities=20%  Similarity=0.285  Sum_probs=209.3

Q ss_pred             cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-ccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           45 WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      +..|...  +....+  .+.+..++.++.|+.+.+|+...+. ....+.....       ..+..+.+. ....     .
T Consensus        61 ~~~~~~~--i~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~-----~  123 (466)
T COG2319          61 LRGHEDS--ITSIAF--SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-------SSVSKLALS-SPDG-----N  123 (466)
T ss_pred             eeeccce--EEEEEE--CCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-------CceeeEEEE-CCCc-----c
Confidence            3445555  444444  6667788989899999999998776 4444443111       234444442 2110     0


Q ss_pred             ceEEEEcc-CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeC
Q 014154          124 RTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAK  201 (430)
Q Consensus       124 ~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~  201 (430)
                      ..++..+. ++.+.+|++...        .........|...|..++|+|++..+++++. ++.+++|++..+..+..+.
T Consensus       124 ~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (466)
T COG2319         124 SILLASSSLDGTVKLWDLSTP--------GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA  195 (466)
T ss_pred             eEEeccCCCCccEEEEEecCC--------CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec
Confidence            13444344 788999987630        1222333366788999999999998888885 9999999999877777766


Q ss_pred             CCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcceE-EEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154          202 PPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (430)
                      .+.         ..+.+++|  .|++. .+++++.|+.|++||...+.. .. .+..|.... ...|+|++.++++++.|
T Consensus       196 ~~~---------~~v~~~~~--~~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d  262 (466)
T COG2319         196 GHT---------DPVSSLAF--SPDGGLLIASGSSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDGSLLASGSSD  262 (466)
T ss_pred             cCC---------CceEEEEE--cCCcceEEEEecCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence            643         77999999  68887 555559999999999886443 44 577787665 33899999899999999


Q ss_pred             CcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154          280 GDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       280 ~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      +.+++||++.... +..+.+| ...+.++.|+|++..+++++.|+.+.+|+..+...........|.. .+..+.|.+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  340 (466)
T COG2319         263 GTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG-PVSSLSFSPDG  340 (466)
T ss_pred             CcEEEeeecCCCcEEEEEecC-CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC-ceEEEEECCCC
Confidence            9999999987664 4455566 8899999999988888889999999999998887776643234533 56888884332


Q ss_pred             c-cccc-CCCCceEecCCCCCc
Q 014154          359 V-ANAA-ADAPMLEIQNGNDTQ  378 (430)
Q Consensus       359 ~-~~~~-~~d~~i~~~~~~~~~  378 (430)
                      . ++.+ ..|+.+.+|+.....
T Consensus       341 ~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         341 SLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CEEEEeecCCCcEEeeecCCCc
Confidence            3 3333 677899999887754

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.77  E-value=1.3e-16  Score=130.26  Aligned_cols=289  Identities=15%  Similarity=0.119  Sum_probs=186.3

Q ss_pred             eeeeeecCCCCC-ceeEEee----cCCeEEEecCC--CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154           54 VLAASIDDSQND-PLLAVAR----KNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (430)
Q Consensus        54 ~~~~~~~~~p~g-~~l~~g~----~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  126 (430)
                      ..++.|...|+. .+||.|+    ..+.|.|..+.  +++.+..-       ...+.-+.+.+.|.+....-   . ..+
T Consensus        47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a-------~fd~~YP~tK~~wiPd~~g~---~-pdl  115 (364)
T KOG0290|consen   47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA-------NFDHPYPVTKLMWIPDSKGV---Y-PDL  115 (364)
T ss_pred             eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC-------CCCCCCCccceEecCCcccc---C-cch
Confidence            334444334443 3688887    34567776554  22221111       11234466677777765311   1 122


Q ss_pred             EEEccCCeeEEEEeeecCccccCCCcceEE---e----eecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee--
Q 014154          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKS---W----NVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEK--  196 (430)
Q Consensus       127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~---~----~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~--  196 (430)
                       .++.+..+++|.+.+...       .+..   .    +..+..++++..|+. +.++|.+++-|-+..|||++++..  
T Consensus       116 -LATs~D~LRlWri~~ee~-------~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~  187 (364)
T KOG0290|consen  116 -LATSSDFLRLWRIGDEES-------RVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT  187 (364)
T ss_pred             -hhcccCeEEEEeccCcCC-------ceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence             344556799999875322       1110   0    123456888898987 678999999999999999998622  


Q ss_pred             -eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec--CCCeEEEEecCCC-CE
Q 014154          197 -IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDS-FN  272 (430)
Q Consensus       197 -~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~sp~~-~~  272 (430)
                       ...+..|.         ..|..++|. ...-+.+++.+.||+|++||++........++..  ..+...++|+++. ++
T Consensus       188 vkTQLIAHD---------KEV~DIaf~-~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpny  257 (364)
T KOG0290|consen  188 VKTQLIAHD---------KEVYDIAFL-KGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNY  257 (364)
T ss_pred             eeeEEEecC---------cceeEEEec-cCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchH
Confidence             23334443         679999994 2234589999999999999999855433333332  3577888998755 67


Q ss_pred             EEEEeCC-CcEEEEEccCC-eEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCce--eeEEEeeccccc
Q 014154          273 IYIGNGS-GDLASVDIRTG-KLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQL--LSAVFLKQHLNE  347 (430)
Q Consensus       273 l~~~~~d-~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~  347 (430)
                      +++-..| ..|.|.|+|.. .++.++++| .+.|++|+|.|.. ..|.++|.|..+.|||+...-.  +..-.+.-...+
T Consensus       258 mATf~~dS~~V~iLDiR~P~tpva~L~~H-~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~  336 (364)
T KOG0290|consen  258 MATFAMDSNKVVILDIRVPCTPVARLRNH-QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGG  336 (364)
T ss_pred             HhhhhcCCceEEEEEecCCCcceehhhcC-cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccc
Confidence            7766554 67999999964 568899998 9999999999965 6899999999999999975322  110001111245


Q ss_pred             eEEeeecccccc-ccccCCCCceEec
Q 014154          348 VVFDSAFADKEV-ANAAADAPMLEIQ  372 (430)
Q Consensus       348 ~v~~~~~s~~g~-~~~~~~d~~i~~~  372 (430)
                      .|..+.|++... .++...++.+.+.
T Consensus       337 EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  337 EVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             eeeeeeecccCCCEEEEEecCeeeEE
Confidence            579999996543 3555555555543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=3.4e-15  Score=135.29  Aligned_cols=280  Identities=10%  Similarity=0.090  Sum_probs=168.0

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee-cCCeEEEecCC-CCcccceeecc
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPL-NGDLRVAISNA   94 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~-~dg~i~iwd~~-~~~~~~~~~~~   94 (430)
                      .++...++.|.+|++...  +...++..+... +....+  .+  +|++++|++++ .++.|.+|++. ++.. .....+
T Consensus         5 y~~~~~~~~I~~~~~~~~--g~l~~~~~~~~~-~~~~~l--~~--spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~   76 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE--GALTLLQVVDVP-GQVQPM--VI--SPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES   76 (330)
T ss_pred             EEEcCCCCCEEEEEECCC--CceeeeeEEecC-CCCccE--EE--CCCCCEEEEEECCCCcEEEEEECCCCce-EEeeee
Confidence            345577899999999642  233355555432 222233  44  67888887754 57889999986 3332 111111


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEE-ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                       +     .......+.+.+..        ..++++ ..++.+.+|++.....    ....+.  ..........++++|+
T Consensus        77 -~-----~~~~p~~i~~~~~g--------~~l~v~~~~~~~v~v~~~~~~g~----~~~~~~--~~~~~~~~~~~~~~p~  136 (330)
T PRK11028         77 -P-----LPGSPTHISTDHQG--------RFLFSASYNANCVSVSPLDKDGI----PVAPIQ--IIEGLEGCHSANIDPD  136 (330)
T ss_pred             -c-----CCCCceEEEECCCC--------CEEEEEEcCCCeEEEEEECCCCC----CCCcee--eccCCCcccEeEeCCC
Confidence             0     01123344444333        244444 4578899998752211    001111  1122345677899999


Q ss_pred             CCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCC--C-
Q 014154          174 EKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQ--R-  248 (430)
Q Consensus       174 ~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~--~-  248 (430)
                      +++++++. .++.|.+||+.+...+........   ..........++|  +|++++++++.. ++.|.+|++...  . 
T Consensus       137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~---~~~~g~~p~~~~~--~pdg~~lyv~~~~~~~v~v~~~~~~~~~~  211 (330)
T PRK11028        137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEV---TTVEGAGPRHMVF--HPNQQYAYCVNELNSSVDVWQLKDPHGEI  211 (330)
T ss_pred             CCEEEEeeCCCCEEEEEEECCCCcccccCCCce---ecCCCCCCceEEE--CCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence            99887655 568999999976332211000000   0000133567899  899999988876 899999999742  1 


Q ss_pred             cceEEEeec------CCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCCe----EEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          249 RPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       249 ~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      ..+..+..+      ......+.++|++++|+++.. ++.|.+|++....    .+.....  ......+.|+|+|++|+
T Consensus       212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~  289 (330)
T PRK11028        212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLI  289 (330)
T ss_pred             EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEE
Confidence            122333221      112336889999999999864 6899999986433    2222222  22456889999999998


Q ss_pred             EEeC-CCcEEEEECC
Q 014154          318 SCGL-DSYLRFWDIK  331 (430)
Q Consensus       318 s~~~-dg~i~iwd~~  331 (430)
                      ++.. +++|.+|++.
T Consensus       290 va~~~~~~v~v~~~~  304 (330)
T PRK11028        290 AAGQKSHHISVYEID  304 (330)
T ss_pred             EEEccCCcEEEEEEc
Confidence            8775 8999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.77  E-value=2.2e-15  Score=136.58  Aligned_cols=276  Identities=11%  Similarity=0.032  Sum_probs=164.7

Q ss_pred             EEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEE-EccCCeeEEEEeeecCccc
Q 014154           69 AVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT-CTTKGKASMRSIEVTKVSA  147 (430)
Q Consensus        69 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~  147 (430)
                      ++...++.|.+|++.+...+..++...      .......+.+.+..        ..+++ +..++.+.+|++..     
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~------~~~~~~~l~~spd~--------~~lyv~~~~~~~i~~~~~~~-----   66 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVD------VPGQVQPMVISPDK--------RHLYVGVRPEFRVLSYRIAD-----   66 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEe------cCCCCccEEECCCC--------CEEEEEECCCCcEEEEEECC-----
Confidence            334678999999996432222222110      00122234333322        24433 34567788887751     


Q ss_pred             cCCCcceEEee-ecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeee-EeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154          148 ESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (430)
Q Consensus       148 ~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~  224 (430)
                         ++.+.... .........++++|++++|++++. ++.|.+|++++...+ .......       ....+..+++  +
T Consensus        67 ---~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-------~~~~~~~~~~--~  134 (330)
T PRK11028         67 ---DGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-------GLEGCHSANI--D  134 (330)
T ss_pred             ---CCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-------CCCcccEeEe--C
Confidence               11222111 122345678999999999988764 789999999642211 1111000       0123566778  8


Q ss_pred             CCCCEEEEEe-CCCcEEEEECCCCCcce------EEEeecCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccC--C--eE
Q 014154          225 DDHRKFVAGT-NDHQVRLYDTSAQRRPV------MSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRT--G--KL  292 (430)
Q Consensus       225 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~--~--~~  292 (430)
                      |+++++++++ .++.|.+||+.+.....      .... .......++|+|++++++++.. ++.|.+||+..  +  +.
T Consensus       135 p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        135 PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence            8998886554 56899999998633211      1111 1244678999999999988876 89999999973  3  23


Q ss_pred             EeeeeCC-----CCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-c-ccC
Q 014154          293 LGCFIGK-----CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N-AAA  364 (430)
Q Consensus       293 ~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~-~~~  364 (430)
                      +..+...     .......+.|+|++++|+++. .++.|.+|++.......++.-..........++|+|||++ + +..
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence            4443321     011234688999999998885 4789999998653321111010011122367899999998 3 344


Q ss_pred             CCCceEecCCCC
Q 014154          365 DAPMLEIQNGND  376 (430)
Q Consensus       365 ~d~~i~~~~~~~  376 (430)
                      .++.|.+|+.+.
T Consensus       294 ~~~~v~v~~~~~  305 (330)
T PRK11028        294 KSHHISVYEIDG  305 (330)
T ss_pred             cCCcEEEEEEcC
Confidence            589999998764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.77  E-value=1.4e-16  Score=148.07  Aligned_cols=280  Identities=14%  Similarity=0.096  Sum_probs=196.1

Q ss_pred             CeEEEecCCCC-cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcc
Q 014154           75 GLTDILNPLNG-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST  153 (430)
Q Consensus        75 g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  153 (430)
                      +.+.||++.+. .+...+..         ...+.++.+.+.+.       ..++.|..+|.+.+|++.......   --.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~---------~s~v~~~~f~p~~p-------~ll~gG~y~GqV~lWD~~~~~~~~---~s~  282 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLES---------PSEVTCLKFCPFDP-------NLLAGGCYNGQVVLWDLRKGSDTP---PSG  282 (555)
T ss_pred             ceEEEEecCCCCCceEEEec---------CCceeEEEeccCCc-------ceEEeeccCceEEEEEccCCCCCC---Ccc
Confidence            47999999765 33333322         24677777777766       789999999999999987654310   112


Q ss_pred             eEEeeecCCCceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeee---EeeCCCCCCCCCCcCCcceeEEEEeecCCCC
Q 014154          154 VKSWNVCASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (430)
Q Consensus       154 i~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  228 (430)
                      +..-...|..++..+.|..+.  .-+++++.||.|..|+++.-...   ..................+++++|. ..+..
T Consensus       283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~-~~~p~  361 (555)
T KOG1587|consen  283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFE-PTDPN  361 (555)
T ss_pred             cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeec-cCCCc
Confidence            334445677888888886644  44999999999999988643221   1111111001111223568899996 44667


Q ss_pred             EEEEEeCCCcEEEEE---CCCCC----cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc-CCeEEeeeeCCC
Q 014154          229 KFVAGTNDHQVRLYD---TSAQR----RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKC  300 (430)
Q Consensus       229 ~l~s~~~dg~i~iwd---~~~~~----~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~  300 (430)
                      .+++|+.+|.|.--+   .+...    +++..+..|.++|+++.++|=+..++..+.|.+++||... ...++..+..+ 
T Consensus       362 ~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~-  440 (555)
T KOG1587|consen  362 HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS-  440 (555)
T ss_pred             eEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc-
Confidence            899999999988733   33222    2244566688999999999988766666669999999987 67777777776 


Q ss_pred             CCCeEEEEecCCCC-eEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          301 SGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       301 ~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ...|++++|||... .++++..||.|.|||+............-. ......+.|+++|+. ++|...|.+++|+...
T Consensus       441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            67799999999874 567778899999999975443332223233 455688899999999 8899999999999864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.77  E-value=1.5e-16  Score=135.64  Aligned_cols=151  Identities=16%  Similarity=0.178  Sum_probs=117.8

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEee--ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE------  195 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------  195 (430)
                      +.+++++.|..+++|.+..+....+  +..|....  ..|...|+++.|+|+|+.|++|+.+|.|.+|-...-.      
T Consensus        27 ~~laT~G~D~~iriW~v~r~~~~~~--~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~  104 (434)
T KOG1009|consen   27 NKLATAGGDKDIRIWKVNRSEPGGG--DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT  104 (434)
T ss_pred             cceecccCccceeeeeeeecCCCCC--ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc
Confidence            5899999999999999987764221  12232221  1467899999999999999999999999999876210      


Q ss_pred             ----------eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEE
Q 014154          196 ----------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA  265 (430)
Q Consensus       196 ----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~  265 (430)
                                ....+..         |...|..++|  +|++.++++++.|..+++||+..+. ....+..|...+..++
T Consensus       105 e~~~~ke~w~v~k~lr~---------h~~diydL~W--s~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen  105 EADLNKEKWVVKKVLRG---------HRDDIYDLAW--SPDSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVA  172 (434)
T ss_pred             hhhhCccceEEEEEecc---------cccchhhhhc--cCCCceeeeeeccceEEEEEeccce-eEeeccccccccceee
Confidence                      0111222         3366888999  8999999999999999999999976 4788888999999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEEcc
Q 014154          266 EEPDSFNIYIGNGSGDLASVDIR  288 (430)
Q Consensus       266 ~sp~~~~l~~~~~d~~i~iwd~~  288 (430)
                      |.|-++++++-+.|...+.+++.
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             cchhhhhhhhhccCcccceeeee
Confidence            99998898888888766666554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=1.4e-16  Score=144.02  Aligned_cols=260  Identities=11%  Similarity=0.104  Sum_probs=187.9

Q ss_pred             CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCC
Q 014154           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP  101 (430)
Q Consensus        22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  101 (430)
                      .+..+.+||...|     .+++++.+|.+.|++++++.    ||+++|+|+.|..|.+|+..-   ...++.       .
T Consensus        31 Ag~rlliyD~ndG-----~llqtLKgHKDtVycVAys~----dGkrFASG~aDK~VI~W~~kl---EG~LkY-------S   91 (1081)
T KOG1538|consen   31 AGSRLLVYDTSDG-----TLLQPLKGHKDTVYCVAYAK----DGKRFASGSADKSVIIWTSKL---EGILKY-------S   91 (1081)
T ss_pred             cCCEEEEEeCCCc-----ccccccccccceEEEEEEcc----CCceeccCCCceeEEEecccc---cceeee-------c
Confidence            4468999999998     88999999999988888765    788999999999999997542   222221       3


Q ss_pred             CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe
Q 014154          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (430)
Q Consensus       102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~  181 (430)
                      |.+.|.++.+.+...        .+++|+.. ..-+|+.+.         ..+.-+  .....+.+.+|..+|++++.|-
T Consensus        92 H~D~IQCMsFNP~~h--------~LasCsLs-dFglWS~~q---------K~V~K~--kss~R~~~CsWtnDGqylalG~  151 (1081)
T KOG1538|consen   92 HNDAIQCMSFNPITH--------QLASCSLS-DFGLWSPEQ---------KSVSKH--KSSSRIICCSWTNDGQYLALGM  151 (1081)
T ss_pred             cCCeeeEeecCchHH--------Hhhhcchh-hccccChhh---------hhHHhh--hhheeEEEeeecCCCcEEEEec
Confidence            557888887766654        56665543 233454321         111111  2246788999999999999999


Q ss_pred             CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC---CCEEEEEeCCCcEEEEECCCCCcceEEEeecC
Q 014154          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE  258 (430)
Q Consensus       182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  258 (430)
                      .+|+|.+-+-. ++....+..+.+      ..++|.+++|.++..   ...+++.....++.+|.+.. +. +..-..-+
T Consensus       152 ~nGTIsiRNk~-gEek~~I~Rpgg------~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~-Igk~r~L~  222 (1081)
T KOG1538|consen  152 FNGTISIRNKN-GEEKVKIERPGG------SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQ-IGKDRALN  222 (1081)
T ss_pred             cCceEEeecCC-CCcceEEeCCCC------CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-ee-ecccccCC
Confidence            99999988653 333323322211      127799999953221   24677777778888887764 21 22222223


Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ....|+.+-|+|.+++.|+.|+.+.+|- +.|-.+.++-.. ..+|+.++..|++++++.|+.||+|-.|++-
T Consensus       223 FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~-D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  223 FDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQ-DSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             CCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeecccc-ceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            4567899999999999999999999996 577777777765 7899999999999999999999999999874

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.77  E-value=2.6e-17  Score=132.55  Aligned_cols=237  Identities=15%  Similarity=0.113  Sum_probs=166.6

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--------
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--------  195 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--------  195 (430)
                      ++++++...|.+.+|.+....        .+..|+..+...|+.+..-|+ ..|.+-+.|..+.+|++.-+.        
T Consensus        26 ~rL~sg~~~G~V~~w~lqt~r--------~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~   96 (323)
T KOG0322|consen   26 ERLMSGLSVGIVKMWVLQTER--------DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIV   96 (323)
T ss_pred             hhhhcccccceEEEEEeecCc--------cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeee
Confidence            478899999999999987554        455666566677777777776 566677778888888775421        


Q ss_pred             ------eeEeeCCCCCCC----------------C--------------CCcCCcceeEEEEeecCCC--CEEEEEeCCC
Q 014154          196 ------KIWTAKPPPKNS----------------L--------------GIFTPTWFTSAAFLSIDDH--RKFVAGTNDH  237 (430)
Q Consensus       196 ------~~~~~~~~~~~~----------------~--------------~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg  237 (430)
                            +...+.......                .              .....+.+++..+- ..++  -+++.|.++|
T Consensus        97 ~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~-~~c~s~~lllaGyEsg  175 (323)
T KOG0322|consen   97 VNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD-HACGSTFLLLAGYESG  175 (323)
T ss_pred             ccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc-ccccceEEEEEeccCC
Confidence                  111110000000                0              00011335555431 1222  2577888999


Q ss_pred             cEEEEECCCCCc---------ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC--eE--EeeeeCCCCCCe
Q 014154          238 QVRLYDTSAQRR---------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG--KL--LGCFIGKCSGSI  304 (430)
Q Consensus       238 ~i~iwd~~~~~~---------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~--~~--~~~~~~~~~~~v  304 (430)
                      .|.+||+.++..         .......|..+|.++.|.+.-..=++|+.+..+..|++...  .+  ..++.-. ...|
T Consensus       176 hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk-npGv  254 (323)
T KOG0322|consen  176 HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK-NPGV  254 (323)
T ss_pred             eEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec-CCCc
Confidence            999999998632         12233458899999999887667788888888999988643  22  1222222 4578


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154          305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      ..+..-||++++||++.|+.||||+.++.+++..  ++.| ...|.+++|+|+..+ ++++.|++|.+|+.
T Consensus       255 ~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV--LkyH-sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  255 SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV--LKYH-SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cceEEccCCcEEeecccCCcEEEEEeccCCchhh--hhhh-hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            8899999999999999999999999999999998  6778 466799999999666 99999999999975

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.76  E-value=1.4e-15  Score=128.40  Aligned_cols=195  Identities=12%  Similarity=0.170  Sum_probs=151.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          164 TIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      .|..+-|+  ..+++..+.+  ..++++++..+..+.++.-+          ..|.++.+    +-++|+++-.+. |+|
T Consensus        48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp----------t~IL~Vrm----Nr~RLvV~Lee~-IyI  110 (391)
T KOG2110|consen   48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP----------TSILAVRM----NRKRLVVCLEES-IYI  110 (391)
T ss_pred             EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEecC----------CceEEEEE----ccceEEEEEccc-EEE
Confidence            34445554  3455544443  34899999887777665543          56889998    556777766654 999


Q ss_pred             EECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154          242 YDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (430)
Q Consensus       242 wd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  316 (430)
                      ||+++.+ ++.++..   +...+.++++++.+.+|+.-+  ..|.|.+||+.+-+.+..+..| .+.+.+++|+++|.+|
T Consensus       111 ydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH-~~~lAalafs~~G~ll  188 (391)
T KOG2110|consen  111 YDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH-KGPLAALAFSPDGTLL  188 (391)
T ss_pred             Eecccce-eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec-CCceeEEEECCCCCEE
Confidence            9999865 4555543   344566777777777887543  4589999999999999999998 9999999999999999


Q ss_pred             EEEeCCCc-EEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154          317 ASCGLDSY-LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       317 ~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                      ||+|+.|+ ||||.+.+|+.+..|+ +|-....|.+++|+|++++ .+.+.-++|++|......
T Consensus       189 ATASeKGTVIRVf~v~~G~kl~eFR-RG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  189 ATASEKGTVIRVFSVPEGQKLYEFR-RGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEeccCceEEEEEEcCCccEeeeee-CCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence            99999996 7899999999999974 4544566899999999999 778889999999887654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=1.5e-17  Score=147.36  Aligned_cols=297  Identities=13%  Similarity=0.135  Sum_probs=194.3

Q ss_pred             eeeecCCCceEEE--EccCCC---------------CCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEE
Q 014154           17 ALTFDSLGLIKVI--EARGEH---------------GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI   79 (430)
Q Consensus        17 l~t~~~dg~i~vw--~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~i   79 (430)
                      .++.+.+...++|  ++....               ........++..|...++.+++    +|....|++++.||+|++
T Consensus       245 ~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~----~~sep~lit~sed~~lk~  320 (577)
T KOG0642|consen  245 SVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAF----HPSEPVLITASEDGTLKL  320 (577)
T ss_pred             cccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhc----CCCCCeEEEeccccchhh
Confidence            5677777888888  433210               0001111244556666555554    455567999999999999


Q ss_pred             ecCCCCccc--ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCC-cceEE
Q 014154           80 LNPLNGDLR--VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKS  156 (430)
Q Consensus        80 wd~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-~~i~~  156 (430)
                      |+++....-  ..++.+  ..|.+|..++.++.+-...        ..+++++.||+++.|++..+.+.-.+.| ..+.-
T Consensus       321 WnLqk~~~s~~~~~epi--~tfraH~gPVl~v~v~~n~--------~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~  390 (577)
T KOG0642|consen  321 WNLQKAKKSAEKDVEPI--LTFRAHEGPVLCVVVPSNG--------EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG  390 (577)
T ss_pred             hhhcccCCccccceeee--EEEecccCceEEEEecCCc--------eEEEeeccCceeeeeccCCCCCcccccCcchhcc
Confidence            999431110  011111  1244677798877776554        4999999999999998863322111111 12222


Q ss_pred             eeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154          157 WNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (430)
Q Consensus       157 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  236 (430)
                      --..|...++.+++++....|++++.||++++|+...... ..+......       ....++.|. +.+-...++...-
T Consensus       391 ~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~-------g~Plsvd~~-ss~~a~~~~s~~~  461 (577)
T KOG0642|consen  391 TLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH-------GYPLSVDRT-SSRPAHSLASFRF  461 (577)
T ss_pred             ceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc-------CCcceEeec-cchhHhhhhhccc
Confidence            2346788999999999999999999999999999866544 223222211       334555552 1111222222222


Q ss_pred             CcEEEEECCCCCcceEEEeec-------CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154          237 HQVRLYDTSAQRRPVMSFDFR-------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  309 (430)
                      +.--++++..... +..+...       ...+.-+.++|...+.+++..|+.|+++|..++.++.....| ...++++++
T Consensus       462 ~~~~~~~~ev~s~-~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~-~~svtslai  539 (577)
T KOG0642|consen  462 GYTSIDDMEVVSD-LLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH-KDSVTSLAI  539 (577)
T ss_pred             ccccchhhhhhhh-eeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeec-cceecceee
Confidence            3333334433222 2222221       124667888999999999999999999999999999999998 889999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154          310 HPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       310 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      .|+|.+|++++.|+.+++|.+....++..
T Consensus       540 ~~ng~~l~s~s~d~sv~l~kld~k~~~~e  568 (577)
T KOG0642|consen  540 DPNGPYLMSGSHDGSVRLWKLDVKTCVLE  568 (577)
T ss_pred             cCCCceEEeecCCceeehhhccchheeec
Confidence            99999999999999999999977666654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.3e-17  Score=143.73  Aligned_cols=304  Identities=13%  Similarity=0.112  Sum_probs=217.4

Q ss_pred             eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccc
Q 014154           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS  121 (430)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  121 (430)
                      ...|..|.+.|..+.|    ...|..|++|+.|..|.+||+..+.....+..       +|...+.+..|++...     
T Consensus       135 ~~kL~~H~GcVntV~F----N~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-------GH~~NvfQaKFiP~s~-----  198 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHF----NQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-------GHCNNVFQAKFIPFSG-----  198 (559)
T ss_pred             hhcccCCCCccceeee----cccCceeeccCccceEEeehhhccCccccccc-------ccccchhhhhccCCCC-----
Confidence            3456678888665555    44678999999999999999998887777654       3444555556666543     


Q ss_pred             cCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (430)
Q Consensus       122 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~  200 (430)
                       ...+++++.+|.+++-.+...    +...++.++.  .|.+.|..++.-|. ..-|++++.|+.+.-+|++.......+
T Consensus       199 -d~ti~~~s~dgqvr~s~i~~t----~~~e~t~rl~--~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~  271 (559)
T KOG1334|consen  199 -DRTIVTSSRDGQVRVSEILET----GYVENTKRLA--PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF  271 (559)
T ss_pred             -CcCceeccccCceeeeeeccc----cceecceecc--cccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence             247899999999998887533    2333344443  46789999999985 467889999999999999876554333


Q ss_pred             CCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCc-----ceEEEee------cCCCeEEEEecC
Q 014154          201 KPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRR-----PVMSFDF------RETPIKAVAEEP  268 (430)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~------~~~~i~~~~~sp  268 (430)
                      .........   ......++.  .| +...+++++.|..+++||.+.-..     ++..+..      ..-.|++++|+.
T Consensus       272 ~cr~~~~~~---~v~L~~Ia~--~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh  346 (559)
T KOG1334|consen  272 VCREADEKE---RVGLYTIAV--DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH  346 (559)
T ss_pred             eeeccCCcc---ceeeeeEec--CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC
Confidence            222111100   023556666  44 445899999999999999875321     1222221      124789999998


Q ss_pred             CCCEEEEEeCCCcEEEEEccC--C----------eEEe-eeeCCCC-CCeEEEEe-cCCCCeEEEEeCCCcEEEEECCCC
Q 014154          269 DSFNIYIGNGSGDLASVDIRT--G----------KLLG-CFIGKCS-GSIRSIAR-HPTLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       269 ~~~~l~~~~~d~~i~iwd~~~--~----------~~~~-~~~~~~~-~~v~~i~~-~~~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      ++.-|+++..|-.|++|.-..  |          ..+. .+++|.. ..|..+-| -|...|+++|+.-|.|.||+-.++
T Consensus       347 ~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~  426 (559)
T KOG1334|consen  347 DGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG  426 (559)
T ss_pred             CccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh
Confidence            888888888899999995432  2          2223 3778732 24666654 578899999999999999999999


Q ss_pred             ceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          334 QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +.+..  +.+. ..+|+|+.=+|--.+ ++.+-|..|+||....
T Consensus       427 eii~~--MegD-r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  427 EIIRF--MEGD-RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             HHHHH--hhcc-cceEeccCCCCCCchhhccCCccceeeecCCc
Confidence            99886  5666 448999999999888 8999999999998744

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=7.6e-16  Score=143.68  Aligned_cols=329  Identities=13%  Similarity=0.120  Sum_probs=214.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCC-ceeEEeecCCeEEEecCCCCcccceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      .+.+-+..+..|+||...++     .++..+.+|..++..+.+..  ++.. .++.+.+.+|.|++||...+.++.++..
T Consensus        28 ~k~l~~~~~~~V~VyS~~Tg-----~~i~~l~~~~a~l~s~~~~~--~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~  100 (792)
T KOG1963|consen   28 AKFLFLCTGNFVKVYSTATG-----ECITSLEDHTAPLTSVIVLP--SSENANYLIVCSLDGTIRVWDWSDGELLKTFDN  100 (792)
T ss_pred             CcEEEEeeCCEEEEEecchH-----hhhhhcccccCccceeeecC--CCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence            45555666789999999998     78888999999977666665  4333 6788999999999999999999888876


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccc------cccCceEEEEccCC--eeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREES------SSRSRTLLTCTTKG--KASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i  165 (430)
                      ..+         +..+.+.+.....+      ......+.+...+-  +..-..+....       ....-+...+ ..-
T Consensus       101 ~~~---------v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-------~~~~d~~~~~-~~~  163 (792)
T KOG1963|consen  101 NLP---------VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-------SAKGDFLKEH-QEP  163 (792)
T ss_pred             CCc---------eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc-------ccchhhhhhh-cCC
Confidence            211         11111111000000      00000111111110  11111111000       0000011111 113


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  245 (430)
                      .++.+++.+.+.+..-.. .+.+|.......  ....+.   ....|...+++.++  +|++++++++..||.|.+|.--
T Consensus       164 ~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~--~~~~~~---~~~~Htf~~t~~~~--spn~~~~Aa~d~dGrI~vw~d~  235 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVHMC-KIHIYFVPKHTK--HTSSRD---ITVHHTFNITCVAL--SPNERYLAAGDSDGRILVWRDF  235 (792)
T ss_pred             ccEEEcCCceEEEEEEee-eEEEEEecccce--eeccch---hhhhhcccceeEEe--ccccceEEEeccCCcEEEEecc
Confidence            567778777777665544 788898876541  111111   12223345788999  8999999999999999999643


Q ss_pred             C---CCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154          246 A---QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (430)
Q Consensus       246 ~---~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d  322 (430)
                      .   .......+..|...|.+++|+++|.+|++|+..+.+.+|.+.+++.  +|-..-.++|..+.+|||+.+.+....|
T Consensus       236 ~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfLPRLgs~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  236 GSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QFLPRLGSPILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             ccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc--ccccccCCeeEEEEEcCCCCeEEEEecC
Confidence            2   1223567888999999999999999999999999999999999883  3333237899999999999999999999


Q ss_pred             CcEEEEECCCCceeeEEE-e-------eccccceEEeeecccc-ccccccCCCCceEecCCCCC
Q 014154          323 SYLRFWDIKTRQLLSAVF-L-------KQHLNEVVFDSAFADK-EVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       323 g~i~iwd~~~~~~~~~~~-~-------~~~~~~~v~~~~~s~~-g~~~~~~~d~~i~~~~~~~~  377 (430)
                      +.|.+....+.....++. +       +.......+.++++|. +..+..+..+.|++|+....
T Consensus       314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence            999999886655443321 0       1112445678889994 44488999999999998653

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=7.6e-17  Score=136.96  Aligned_cols=164  Identities=12%  Similarity=0.115  Sum_probs=139.1

Q ss_pred             cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC------CcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEE
Q 014154          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ------RRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLA  283 (430)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~  283 (430)
                      .|...|..++|. +.+.+.||+|+.|.+|.||++..+      ..|+..+.+|...|--++|+|.. +.|++++.|++|.
T Consensus        79 GHt~~vLDi~w~-PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~  157 (472)
T KOG0303|consen   79 GHTAPVLDIDWC-PFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVS  157 (472)
T ss_pred             CccccccccccC-ccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEE
Confidence            355789999996 446779999999999999998653      24688999999999999999975 6888999999999


Q ss_pred             EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccccccc
Q 014154          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAA  363 (430)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~  363 (430)
                      +||+.+++.+.++. | ...|+++.|+.+|.+|++.+.|..|||||.++++.+..  -.+|.+..-..+.|-.+|.+++.
T Consensus       158 iWnv~tgeali~l~-h-pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e--~~~heG~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  158 IWNVGTGEALITLD-H-PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE--GVAHEGAKPARAIFLASGKIFTT  233 (472)
T ss_pred             EEeccCCceeeecC-C-CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee--cccccCCCcceeEEeccCceeee
Confidence            99999999988887 6 89999999999999999999999999999999999987  45665655567788888887433


Q ss_pred             ----CCCCceEecCCCCCcc
Q 014154          364 ----ADAPMLEIQNGNDTQE  379 (430)
Q Consensus       364 ----~~d~~i~~~~~~~~~~  379 (430)
                          ..+..+-+|+...+.+
T Consensus       234 Gfsr~seRq~aLwdp~nl~e  253 (472)
T KOG0303|consen  234 GFSRMSERQIALWDPNNLEE  253 (472)
T ss_pred             ccccccccceeccCcccccC
Confidence                4578899999876643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=4.7e-18  Score=156.97  Aligned_cols=283  Identities=16%  Similarity=0.214  Sum_probs=204.7

Q ss_pred             eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      .+..+.+|-..|+|..|--    .|.++++|+.|..++||..+++.++..+.+|        ...|..+++....     
T Consensus       182 ~ikrLlgH~naVyca~fDr----tg~~Iitgsdd~lvKiwS~et~~~lAs~rGh--------s~ditdlavs~~n-----  244 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDR----TGRYIITGSDDRLVKIWSMETARCLASCRGH--------SGDITDLAVSSNN-----  244 (1113)
T ss_pred             HHHHHHhhhhheeeeeecc----ccceEeecCccceeeeeeccchhhhccCCCC--------ccccchhccchhh-----
Confidence            3445667888877776643    5779999999999999999999999888774        3466666654433     


Q ss_pred             ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (430)
Q Consensus       121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  200 (430)
                         -.+++++.|..++||.+....        .|.+.. .|.+.|++++|+|-.    +.+.||++++||.+-.-.++. 
T Consensus       245 ---~~iaaaS~D~vIrvWrl~~~~--------pvsvLr-ghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~-  307 (1113)
T KOG0644|consen  245 ---TMIAAASNDKVIRVWRLPDGA--------PVSVLR-GHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV-  307 (1113)
T ss_pred             ---hhhhhcccCceEEEEecCCCc--------hHHHHh-ccccceeeeccCccc----cCCCCCceEeccccccccccC-
Confidence               377888888899999986544        344443 678999999999954    678999999999871111111 


Q ss_pred             CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCC-CCEEEEEeCC
Q 014154          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGS  279 (430)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d  279 (430)
                       . .  +........+.++.|  ..++..+++++.|+.-..|.+....       .+...+.-+.++.+ ..+.+++-.+
T Consensus       308 -p-r--p~~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~  374 (1113)
T KOG0644|consen  308 -P-R--PLKFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARND  374 (1113)
T ss_pred             -C-C--CCCcccccceeeeec--cccccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceeeeee
Confidence             0 0  011111144666777  6678889999999998888765311       11111111222212 2466677778


Q ss_pred             CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      ..+++|++.+|++.+.+.+| ...++.+.+||-. ....+++.||...|||+-.|.++..++ .+| . .+...+||+||
T Consensus       375 ~~~~vwnl~~g~l~H~l~gh-sd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~-~gh-~-kl~d~kFSqdg  450 (1113)
T KOG0644|consen  375 HRLCVWNLYTGQLLHNLMGH-SDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF-IGH-G-KLVDGKFSQDG  450 (1113)
T ss_pred             eEeeeeecccchhhhhhccc-ccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee-ccc-c-eeeccccCCCC
Confidence            88999999999999999998 8899999999965 456789999999999999999988764 555 3 35788999999


Q ss_pred             cc-cccCCCCceEecCC
Q 014154          359 VA-NAAADAPMLEIQNG  374 (430)
Q Consensus       359 ~~-~~~~~d~~i~~~~~  374 (430)
                      .. +...+-|.++|+..
T Consensus       451 ts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  451 TSIALSDDHGQLYILGT  467 (1113)
T ss_pred             ceEecCCCCCceEEecc
Confidence            98 66667788888764

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.75  E-value=1.2e-16  Score=140.83  Aligned_cols=209  Identities=13%  Similarity=0.122  Sum_probs=154.2

Q ss_pred             CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                      ...++.++.||...+.+-.          +.+..---.|.+.+.+-.|+|+|.-|++++.||.|++|.-. |-...++..
T Consensus        75 ~d~~~i~s~DGkf~il~k~----------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q  143 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKS----------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQ  143 (737)
T ss_pred             cceEEEEcCCceEEEeccc----------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhh
Confidence            3578889999988777522          11111112577889999999999999999999999999853 322222222


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i  282 (430)
                      .         ...|.|++|  .|+.+.++.| ..+.+.|=-+.... .+...+.|.+-|.++.|+|...++++|++|-..
T Consensus       144 ~---------~~~v~c~~W--~p~S~~vl~c-~g~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kf  210 (737)
T KOG1524|consen  144 N---------EESIRCARW--APNSNSIVFC-QGGHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRF  210 (737)
T ss_pred             c---------CceeEEEEE--CCCCCceEEe-cCCeEEEeeccccc-ceeEEeccCcEEEEeecCccccceeecCCceeE
Confidence            1         167999999  7777766664 44566666666534 367789999999999999999999999999999


Q ss_pred             EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-c
Q 014154          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N  361 (430)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~  361 (430)
                      ++||. .|+.+..-..| ..+|++++|+|+ ..++.++.+ ++|              +.....+.|+.++||+||.. +
T Consensus       211 KvWD~-~G~~Lf~S~~~-ey~ITSva~npd-~~~~v~S~n-t~R--------------~~~p~~GSifnlsWS~DGTQ~a  272 (737)
T KOG1524|consen  211 KIWDA-QGANLFTSAAE-EYAITSVAFNPE-KDYLLWSYN-TAR--------------FSSPRVGSIFNLSWSADGTQAT  272 (737)
T ss_pred             Eeecc-cCcccccCChh-ccceeeeeeccc-cceeeeeee-eee--------------ecCCCccceEEEEEcCCCceee
Confidence            99996 67777777777 899999999999 556666543 333              22222445799999999998 6


Q ss_pred             ccCCCCceEecC
Q 014154          362 AAADAPMLEIQN  373 (430)
Q Consensus       362 ~~~~d~~i~~~~  373 (430)
                      +|...|.+.+-.
T Consensus       273 ~gt~~G~v~~A~  284 (737)
T KOG1524|consen  273 CGTSTGQLIVAY  284 (737)
T ss_pred             ccccCceEEEee
Confidence            666777765543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.75  E-value=8.2e-16  Score=147.99  Aligned_cols=271  Identities=14%  Similarity=0.143  Sum_probs=184.4

Q ss_pred             EEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEE
Q 014154           29 IEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVG  108 (430)
Q Consensus        29 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  108 (430)
                      |++++      .++..+.+|...+.-++.+   ++++.++++|+.||+|++|+...-.  ..             .... 
T Consensus      1034 W~p~G------~lVAhL~Ehs~~v~k~a~s---~~~~s~FvsgS~DGtVKvW~~~k~~--~~-------------~~s~- 1088 (1431)
T KOG1240|consen 1034 WNPRG------ILVAHLHEHSSAVIKLAVS---SEHTSLFVSGSDDGTVKVWNLRKLE--GE-------------GGSA- 1088 (1431)
T ss_pred             CCccc------eEeehhhhccccccceeec---CCCCceEEEecCCceEEEeeehhhh--cC-------------ccee-
Confidence            77777      6888899998887755554   3556899999999999999974211  00             0000 


Q ss_pred             EEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEE
Q 014154          109 LHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNV  188 (430)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~  188 (430)
                       .                                          ....|.. .+..+.++.+.++++.+|+++.||.|.+
T Consensus      1089 -r------------------------------------------S~ltys~-~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1089 -R------------------------------------------SELTYSP-EGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred             -e------------------------------------------eeEEEec-cCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence             0                                          1112221 3567788888889999999999999999


Q ss_pred             EECCCC--ee-----eEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcceEE--EeecC
Q 014154          189 WDLDKC--EK-----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMS--FDFRE  258 (430)
Q Consensus       189 ~d~~~~--~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~  258 (430)
                      .+++..  ..     .+....+.       ....|...+|. ..... .|+.+...+.|..||++.... ...  .....
T Consensus      1125 ~~id~~~~~~~~~~~~ri~n~~~-------~g~vv~m~a~~-~~~~S~~lvy~T~~~~iv~~D~r~~~~-~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKK-------DGVVVSMHAFT-AIVQSHVLVYATDLSRIVSWDTRMRHD-AWRLKNQLRH 1195 (1431)
T ss_pred             EEccccccccceeeeeecccccC-------CCceEEeeccc-ccccceeEEEEEeccceEEecchhhhh-HHhhhcCccc
Confidence            998762  11     11111111       11234444443 23344 788899999999999997443 222  22234


Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC---CeEEEEe--CCCcEEEEECCCC
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL---PIIASCG--LDSYLRFWDIKTR  333 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~s~~--~dg~i~iwd~~~~  333 (430)
                      +.|++++.+|.++++++|+..|.+.+||+|-+.++..+...+..+|+.+..+|-.   ...++++  ..+.|.+|++.+|
T Consensus      1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            7899999999999999999999999999999998888775546889988888743   3444444  5788999999998


Q ss_pred             ceeeEEEee-c----------------cccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154          334 QLLSAVFLK-Q----------------HLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       334 ~~~~~~~~~-~----------------~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                      .+..++... +                +.-..+.+.--.+++-.++++.|..|+.||....
T Consensus      1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            776654322 0                0011223333334444599999999999998754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.75  E-value=4.5e-18  Score=147.27  Aligned_cols=255  Identities=9%  Similarity=0.068  Sum_probs=189.7

Q ss_pred             CCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe
Q 014154           61 DSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (430)
Q Consensus        61 ~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~  140 (430)
                      ...+|.+|+.|+..|.|..+|+.++++..++..-         ..+..+.|+...         .+++......+.||+-
T Consensus       137 ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~---------Etv~Dv~~LHne---------q~~AVAQK~y~yvYD~  198 (545)
T KOG1272|consen  137 YTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM---------ETVRDVTFLHNE---------QFFAVAQKKYVYVYDN  198 (545)
T ss_pred             ecCCccEEEecCCccceeeeecccceeeeeeehh---------hhhhhhhhhcch---------HHHHhhhhceEEEecC
Confidence            3678999999999999999999999988777651         233344454432         4555556666666652


Q ss_pred             eecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEE
Q 014154          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (430)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (430)
                      .           -+.+..+.....|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....         ..+..+.
T Consensus       199 ~-----------GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~---------G~~~vm~  258 (545)
T KOG1272|consen  199 N-----------GTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGA---------GRTDVMK  258 (545)
T ss_pred             C-----------CcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccC---------Cccchhh
Confidence            2           1223334445678889999999999999999999999999999987776644         3455555


Q ss_pred             EeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC
Q 014154          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC  300 (430)
Q Consensus       221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  300 (430)
                      -  +|-...+-+|...|+|.+|.... +.|+..+-.|.++|.+|++.++|+|++|.+.|..++|||+++...+.++..  
T Consensus       259 q--NP~NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--  333 (545)
T KOG1272|consen  259 Q--NPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--  333 (545)
T ss_pred             c--CCccceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--
Confidence            5  77788999999999999999997 457888888999999999999999999999999999999999887777765  


Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCcEEEEEC-CCCc-eeeEEEeeccccceEEeeeccccccc
Q 014154          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDI-KTRQ-LLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~-~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      .-+...++||..|  ++.++.-..|.||.= -.+. .....++.......|.++.|.|-..+
T Consensus       334 p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDv  393 (545)
T KOG1272|consen  334 PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDV  393 (545)
T ss_pred             CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHe
Confidence            2366788898777  334445557999952 2211 22222233334557899999997665

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.1e-16  Score=137.96  Aligned_cols=231  Identities=13%  Similarity=0.099  Sum_probs=155.9

Q ss_pred             eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      +.+.+.+|.+.|.++.+    +.+|.+|++|+.|-.+.|||.-..+++..+..       +|...|.++++.+....   
T Consensus        42 lE~eL~GH~GCVN~LeW----n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T-------gHtaNIFsvKFvP~tnn---  107 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEW----NADGELLASGSDDTRLIVWDPFEYKLLHSIST-------GHTANIFSVKFVPYTNN---  107 (758)
T ss_pred             hhhhhccccceecceee----cCCCCEEeecCCcceEEeecchhcceeeeeec-------ccccceeEEeeeccCCC---
Confidence            33567889999877666    45788999999999999999988887777654       45568888898887552   


Q ss_pred             ccCceEEEEccCCeeEEEEeeecCc--cccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeee
Q 014154          121 SRSRTLLTCTTKGKASMRSIEVTKV--SAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKI  197 (430)
Q Consensus       121 ~~~~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~  197 (430)
                         ..++++..|..++++++.....  .--....+++.|. .|...|..++..|++ +.+.+++.||+|+-||++.....
T Consensus       108 ---riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~-cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c  183 (758)
T KOG1310|consen  108 ---RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWS-CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC  183 (758)
T ss_pred             ---eEEEeccCcceEEEEecccccccccccCccchhhhhh-hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC
Confidence               4788899999999999875432  1111223556676 567788889999987 78899999999999999753211


Q ss_pred             Ee-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-----------c------ceEEE-eecC
Q 014154          198 WT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-----------R------PVMSF-DFRE  258 (430)
Q Consensus       198 ~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~------~~~~~-~~~~  258 (430)
                      .. ...+..-..-....-...++... +.+..+|++|+.|-..++||.+...           .      .+..+ .+|.
T Consensus       184 ~p~~~~~~~l~ny~~~lielk~ltis-p~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl  262 (758)
T KOG1310|consen  184 NPDEDCPSILVNYNPQLIELKCLTIS-PSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL  262 (758)
T ss_pred             CccccccHHHHHhchhhheeeeeeec-CCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc
Confidence            10 00000000000001235677774 3356799999999999999944211           0      12211 1221


Q ss_pred             --------C---CeEEEEecCCCCEEEEEeCCCcEEEEEccCC
Q 014154          259 --------T---PIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (430)
Q Consensus       259 --------~---~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  290 (430)
                              .   -++-+.|+|+|.-|++.-..-.|+++|+..+
T Consensus       263 kn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  263 KNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             cCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence                    1   1456789999988877777778999998654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=9.7e-17  Score=137.72  Aligned_cols=163  Identities=19%  Similarity=0.171  Sum_probs=123.0

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-----CEEEEE
Q 014154          159 VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-----RKFVAG  233 (430)
Q Consensus       159 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~l~s~  233 (430)
                      ..|.+.|.++.|+|++++|++-+.| ..+||+.+++..+........       ......+.|  +.++     .+++..
T Consensus       183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k-------~~~~~~cRF--~~d~~~~~l~laa~~  252 (398)
T KOG0771|consen  183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSK-------DEMFSSCRF--SVDNAQETLRLAASQ  252 (398)
T ss_pred             HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCccc-------chhhhhcee--cccCCCceEEEEEec
Confidence            4677899999999999999999999 999999999866555442211       133556677  4444     223333


Q ss_pred             eCCCcEEEEECCCCCc----ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154          234 TNDHQVRLYDTSAQRR----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  309 (430)
                      ..-+.|+.||+.....    +..........|++++.+++|++++.|+.||.|-|++..+.+.++..+..|...|+.+.|
T Consensus       253 ~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF  332 (398)
T KOG0771|consen  253 FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTF  332 (398)
T ss_pred             CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEE
Confidence            3455677777654222    112222223579999999999999999999999999999999887777655899999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEECC
Q 014154          310 HPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       310 ~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      +|+.+++++.+.|....|..+.
T Consensus       333 ~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  333 SPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             cCCcCcccccccCCceeEEEEe
Confidence            9999999999999988887764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.73  E-value=1.9e-16  Score=139.73  Aligned_cols=174  Identities=21%  Similarity=0.239  Sum_probs=134.5

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC----
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----  247 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----  247 (430)
                      +.+--|++|-.-|.|.+.|....+....+...     .......|+++.|.+. +...++++-.+|.+++||....    
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~-----r~i~ktsvT~ikWvpg-~~~~Fl~a~~sGnlyly~~~~~~~~t  256 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEE-----RLINKSSVTCIKWVPG-SDSLFLVAHASGNLYLYDKEIVCGAT  256 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhc-----ccccccceEEEEEEeC-CCceEEEEEecCceEEeeccccccCC
Confidence            45667788888899999887652221111111     0111267999999743 4456667788999999976421    


Q ss_pred             -----------------------CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154          248 -----------------------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI  304 (430)
Q Consensus       248 -----------------------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  304 (430)
                                             ..|+..+...++.|..++|+|||++||+.+.||.+||||+.+.+++..++.. -+..
T Consensus       257 ~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGGL  335 (636)
T KOG2394|consen  257 APSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGGL  335 (636)
T ss_pred             CCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccce
Confidence                                   0233334444568899999999999999999999999999999888888776 6789


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc
Q 014154          305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA  355 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s  355 (430)
                      .|++|||||+||++|++|-.|.||.+..++.+..  -+|| ...|..++|.
T Consensus       336 LCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR--GqGH-kSWVs~VaFD  383 (636)
T KOG2394|consen  336 LCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR--GQGH-KSWVSVVAFD  383 (636)
T ss_pred             EEEEEcCCccEEEecCCcceEEEEEeccceEEEe--cccc-ccceeeEeec
Confidence            9999999999999999999999999999999987  7788 7788999988

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.73  E-value=6.7e-17  Score=145.21  Aligned_cols=236  Identities=12%  Similarity=0.074  Sum_probs=164.9

Q ss_pred             ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCC
Q 014154          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (430)
Q Consensus       130 ~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  208 (430)
                      +.+|.+.|+.+......   .|+.+-  .+.++..|+.+.|+| +...|++++.||.|++|.+..+.........  ...
T Consensus       600 g~gG~iai~el~~PGrL---PDgv~p--~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tP--e~~  672 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRL---PDGVMP--GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTP--EKI  672 (1012)
T ss_pred             CCCceEEEEEcCCCCCC---Cccccc--ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCc--cee
Confidence            44566777776543321   122211  122356799999999 8889999999999999999764322111111  111


Q ss_pred             CCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (430)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~  288 (430)
                      -..|...|+++.|++ -..+.|++++.|-+|++||++++. ....+.+|.+.|..++|||+|+.+++.+.||+|++|..+
T Consensus       673 lt~h~eKI~slRfHP-LAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  673 LTIHGEKITSLRFHP-LAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPR  750 (1012)
T ss_pred             eecccceEEEEEecc-hhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCC
Confidence            112347899999952 245689999999999999999866 477899999999999999999999999999999999998


Q ss_pred             CCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCC----cEEEEECCC--CceeeEEEeeccccceEEeeeccccccc-
Q 014154          289 TGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRFWDIKT--RQLLSAVFLKQHLNEVVFDSAFADKEVA-  360 (430)
Q Consensus       289 ~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg----~i~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~-  360 (430)
                      .++. +++-.+.-...--.|.|.-+|+++++.+.|.    .|.+||.++  +..+.+..+....+  +.-..|.+|... 
T Consensus       751 s~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps--~LvP~YD~Ds~~l  828 (1012)
T KOG1445|consen  751 SREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS--PLVPHYDYDSNVL  828 (1012)
T ss_pred             CCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc--cccccccCCCceE
Confidence            7653 4443332223345677888999998888764    688998875  34555533333322  233456666554 


Q ss_pred             -cccCCCCceEecCCCC
Q 014154          361 -NAAADAPMLEIQNGND  376 (430)
Q Consensus       361 -~~~~~d~~i~~~~~~~  376 (430)
                       ++|-.|..|.+|+...
T Consensus       829 fltGKGD~~v~~yEv~~  845 (1012)
T KOG1445|consen  829 FLTGKGDRFVNMYEVIY  845 (1012)
T ss_pred             EEecCCCceEEEEEecC
Confidence             8888999999998654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=1e-16  Score=137.57  Aligned_cols=194  Identities=14%  Similarity=0.062  Sum_probs=149.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  245 (430)
                      .+++|++++..|++++.||++|+|++.+...+.....+.         ..|.++.|  +||+.+|++-+.| ..+||+.+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~---------~eV~DL~F--S~dgk~lasig~d-~~~VW~~~  215 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHH---------AEVKDLDF--SPDGKFLASIGAD-SARVWSVN  215 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhc---------Ccccccee--CCCCcEEEEecCC-ceEEEEec
Confidence            789999999999999999999999987766665555544         67999999  9999999999999 99999999


Q ss_pred             CCCcceEEEe--ecCCCeEEEEecCCC---CEE--EEEeCCCcEEEEEccCCeE------EeeeeCCCCCCeEEEEecCC
Q 014154          246 AQRRPVMSFD--FRETPIKAVAEEPDS---FNI--YIGNGSGDLASVDIRTGKL------LGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       246 ~~~~~~~~~~--~~~~~i~~~~~sp~~---~~l--~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~i~~~~~  312 (430)
                      ++.. +....  ........+.|+.|+   .+.  +.-...+.|+.||+...+-      ...+..  ...|++++.+++
T Consensus       216 ~g~~-~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~--~~siSsl~VS~d  292 (398)
T KOG0771|consen  216 TGAA-LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR--FKSISSLAVSDD  292 (398)
T ss_pred             cCch-hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc--cCcceeEEEcCC
Confidence            9743 44333  123356677787776   333  3333446677776643221      112222  357999999999


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      |++++.|+.||.|-|++..+.++++-+ -+.| ...|+.+.|+||.++ ++.+.|....+.....
T Consensus       293 Gkf~AlGT~dGsVai~~~~~lq~~~~v-k~aH-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  293 GKFLALGTMDGSVAIYDAKSLQRLQYV-KEAH-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEeccCCcEEEEEeceeeeeEee-hhhh-eeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999999998888764 4566 567899999999998 8888888888876655

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=1.8e-15  Score=123.79  Aligned_cols=248  Identities=14%  Similarity=0.097  Sum_probs=173.9

Q ss_pred             CCCCcceeeeeecCCCCC---ceeEEeecCCeEEEecCCCCcccceeec-cCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           48 PHSSNCVLAASIDDSQND---PLLAVARKNGLTDILNPLNGDLRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        48 ~~~~~~~~~~~~~~~p~g---~~l~~g~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      |.-+++-+-+.+  .+.|   ++||+.+  ..+++|.+...+.....+. ......+....+++++.|...+.       
T Consensus        95 ~~YP~tK~~wiP--d~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp-------  163 (364)
T KOG0290|consen   95 HPYPVTKLMWIP--DSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP-------  163 (364)
T ss_pred             CCCCccceEecC--CccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc-------
Confidence            555544444444  3222   3566543  6799999874322222221 11112223345777777776666       


Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                      .++.+.+.|-+..||++..+      ..++++.--+.|..+|..++|...+ +.+++.+.||.+++||++..+...-+..
T Consensus       164 ~~igtSSiDTTCTiWdie~~------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE  237 (364)
T KOG0290|consen  164 NLIGTSSIDTTCTIWDIETG------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE  237 (364)
T ss_pred             ceeEeecccCeEEEEEEeec------cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec
Confidence            78899999999999999865      2457888888999999999999744 6788999999999999987554322222


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-CcEEEEECCCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCC
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSG  280 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~  280 (430)
                      ....      ..+...++|. ..+.+++++-..| ..|.|.|++....++..+.+|.+.|..|+|.|.. ..|.+++.|.
T Consensus       238 ~p~~------~~pLlRLswn-kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~  310 (364)
T KOG0290|consen  238 DPSP------STPLLRLSWN-KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDC  310 (364)
T ss_pred             CCCC------CCcceeeccC-cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcc
Confidence            1110      1456677774 3456677775554 4799999999888999999999999999999965 7889999999


Q ss_pred             cEEEEEccCCe------EEeeeeCCCCCCeEEEEecC-CCCeEEEEeC
Q 014154          281 DLASVDIRTGK------LLGCFIGKCSGSIRSIARHP-TLPIIASCGL  321 (430)
Q Consensus       281 ~i~iwd~~~~~------~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~  321 (430)
                      .+.+||+.+.-      ++..+..  .+.|+.+.|++ ...+++.+..
T Consensus       311 qaliWDl~q~~~~~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai~~~  356 (364)
T KOG0290|consen  311 QALIWDLQQMPRENGEDPILAYTA--GGEVNQIQWSSSQPDWIAICFG  356 (364)
T ss_pred             eEEEEecccccccCCCCchhhhhc--cceeeeeeecccCCCEEEEEec
Confidence            99999997532      2333443  67899999996 4567777753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=3.1e-15  Score=144.09  Aligned_cols=284  Identities=15%  Similarity=0.150  Sum_probs=178.8

Q ss_pred             cceeeecCCCceEEEEccCCCC--CcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC--cccce
Q 014154           15 LRALTFDSLGLIKVIEARGEHG--GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVA   90 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~--~~~~~   90 (430)
                      ..++||+.||+||+|+...-..  +..+...++......+..+.++.    .|+.+|+|+.||.|++.++...  .....
T Consensus      1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~----~~~~~Av~t~DG~v~~~~id~~~~~~~~~ 1137 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG----NGDQFAVSTKDGSVRVLRIDHYNVSKRVA 1137 (1431)
T ss_pred             ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc----CCCeEEEEcCCCeEEEEEcccccccccee
Confidence            5689999999999999876322  33444455554556666777766    4568999999999999998752  11111


Q ss_pred             eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC---CCceEE
Q 014154           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---SGTIAF  167 (430)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~---~~~i~~  167 (430)
                      .....+  -.-..+.++.+.-+.....     .-.++.++..+.+..|++....+          .|...+   .+.|++
T Consensus      1138 ~~~ri~--n~~~~g~vv~m~a~~~~~~-----S~~lvy~T~~~~iv~~D~r~~~~----------~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1138 TQVRIP--NLKKDGVVVSMHAFTAIVQ-----SHVLVYATDLSRIVSWDTRMRHD----------AWRLKNQLRHGLVTS 1200 (1431)
T ss_pred             eeeecc--cccCCCceEEeeccccccc-----ceeEEEEEeccceEEecchhhhh----------HHhhhcCccccceeE
Confidence            111000  0011234444443333220     12667777777888888764332          343332   378999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee-cCCCCEEEEEe--CCCcEEEEEC
Q 014154          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGT--NDHQVRLYDT  244 (430)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~--~dg~i~iwd~  244 (430)
                      ++.+|.++++++|+..|.+.+||++=+..+.....+.        ..+++.+..++ .+.....++++  ..+.|.+|++
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~--------~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA--------RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEeecCceeecccCcc--------cCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            9999999999999999999999998777766654432        14566555532 23334555544  4778999999


Q ss_pred             CCCCcceEEEeec-CC------------------CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE------------
Q 014154          245 SAQRRPVMSFDFR-ET------------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL------------  293 (430)
Q Consensus       245 ~~~~~~~~~~~~~-~~------------------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~------------  293 (430)
                      .++.+ ...+-.. ..                  ......+..-+.++++|+.|..|+.||.......            
T Consensus      1273 ~~g~~-~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~ 1351 (1431)
T KOG1240|consen 1273 ETGLR-QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYS 1351 (1431)
T ss_pred             ccCcc-eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccc
Confidence            98754 3333221 10                  1111223333568899999999999997532111            


Q ss_pred             -----------------ee-------------------ee-------CCCCCCeEEEEecCC-CCeEEEEeCCCcEEEE
Q 014154          294 -----------------GC-------------------FI-------GKCSGSIRSIARHPT-LPIIASCGLDSYLRFW  328 (430)
Q Consensus       294 -----------------~~-------------------~~-------~~~~~~v~~i~~~~~-~~~l~s~~~dg~i~iw  328 (430)
                                       ..                   +.       ..|..+|+++++... ..+|++++.||.|+||
T Consensus      1352 ~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1352 TNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred             ccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence                             00                   00       004567888877653 4689999999999999

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.8e-15  Score=141.38  Aligned_cols=235  Identities=12%  Similarity=0.036  Sum_probs=152.7

Q ss_pred             CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC---CeEEEecCCCCcccceeeccCCCCC
Q 014154           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGA   99 (430)
Q Consensus        23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~   99 (430)
                      +..|.+||..+.      -...+..+...  +....|  +|||++|+..+.+   ..|.+||+.+++...          
T Consensus       183 ~~~i~i~d~dg~------~~~~lt~~~~~--v~~p~w--SPDG~~la~~s~~~~~~~i~i~dl~tg~~~~----------  242 (429)
T PRK01742        183 PYEVRVADYDGF------NQFIVNRSSQP--LMSPAW--SPDGSKLAYVSFENKKSQLVVHDLRSGARKV----------  242 (429)
T ss_pred             eEEEEEECCCCC------CceEeccCCCc--cccceE--cCCCCEEEEEEecCCCcEEEEEeCCCCceEE----------
Confidence            468999999874      23344445554  455556  8899999887643   368888876543110          


Q ss_pred             CCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEE
Q 014154          100 QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF  179 (430)
Q Consensus       100 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~  179 (430)
                            +                     ..                           +    .+....++|+|+++.|++
T Consensus       243 ------l---------------------~~---------------------------~----~g~~~~~~wSPDG~~La~  264 (429)
T PRK01742        243 ------V---------------------AS---------------------------F----RGHNGAPAFSPDGSRLAF  264 (429)
T ss_pred             ------E---------------------ec---------------------------C----CCccCceeECCCCCEEEE
Confidence                  0                     00                           0    011124688999998887


Q ss_pred             Ee-CCCeEE--EEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceEEEe
Q 014154          180 GG-KGVEVN--VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSFD  255 (430)
Q Consensus       180 ~~-~d~~i~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~  255 (430)
                      +. .+|.+.  +||+.++.. ..+..+.         ..+....|  +|+++.|+.++ .++...||++.........+ 
T Consensus       265 ~~~~~g~~~Iy~~d~~~~~~-~~lt~~~---------~~~~~~~w--SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-  331 (429)
T PRK01742        265 ASSKDGVLNIYVMGANGGTP-SQLTSGA---------GNNTEPSW--SPDGQSILFTSDRSGSPQVYRMSASGGGASLV-  331 (429)
T ss_pred             EEecCCcEEEEEEECCCCCe-EeeccCC---------CCcCCEEE--CCCCCEEEEEECCCCCceEEEEECCCCCeEEe-
Confidence            64 577654  456655543 2333222         34667889  89999777655 57888888775432223333 


Q ss_pred             ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC--CC
Q 014154          256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK--TR  333 (430)
Q Consensus       256 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~--~~  333 (430)
                      .+..  .++.|+|+|++|+..+.++ +.+||+.+++........   ....+.|+|+|++|+.++.++.+.+|++.  +|
T Consensus       332 ~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G  405 (429)
T PRK01742        332 GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG  405 (429)
T ss_pred             cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            3333  4678999999998887765 666999988764332222   23567899999999999999988888763  57


Q ss_pred             ceeeEEEeeccccceEEeeecccc
Q 014154          334 QLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       334 ~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      +.+..  +.+| ...+..++|+|-
T Consensus       406 ~~~~~--l~~~-~g~~~~p~wsp~  426 (429)
T PRK01742        406 RFKAR--LPGS-DGQVKFPAWSPY  426 (429)
T ss_pred             CceEE--ccCC-CCCCCCcccCCC
Confidence            77766  4455 345688999984

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.71  E-value=8.3e-16  Score=145.89  Aligned_cols=271  Identities=13%  Similarity=0.147  Sum_probs=193.6

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      +||++|. .-.|.+||+..+..+..+.....+.+......+.   +          ..+.++++..-..+.+-...+.  
T Consensus        18 ~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l----------~~~~~v~~~~~~~v~~~~~~~~--   81 (967)
T KOG0974|consen   18 DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---L----------LSGKIVTCAKSDEVYVKEASNQ--   81 (967)
T ss_pred             ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce---e----------ccceEEEEEeecceeecchhhh--
Confidence            4676664 3679999999998877766532111111111110   1          1135555555444443332211  


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                             .+..|    ...|....+.-+...++.++.++.+.+||...+.............       ...++-+-.++
T Consensus        82 -------~~~~~----s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-------l~~~~~~g~s~  143 (967)
T KOG0974|consen   82 -------IIERF----SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-------LYSSLIIGDSA  143 (967)
T ss_pred             -------hhhhc----cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEE-------EEeEEEEeccC
Confidence                   11111    1233334444567888889999999999998877776665543211       12222222267


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe-eeeCCCCCCe
Q 014154          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG-CFIGKCSGSI  304 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~v  304 (430)
                      +.-++++|+.-+.|.+|++.....+. .+.+|++.|.++.|+-||+++++.+.|.++++|++.+.+... ..-+| .++|
T Consensus       144 ~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgH-saRv  221 (967)
T KOG0974|consen  144 EELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGH-SARV  221 (967)
T ss_pred             cEEEEEeccccccEEEEeccccCCcc-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccc-ccee
Confidence            77799999999999999999645444 788999999999999999999999999999999999988766 66677 9999


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      ..++|+|+  .+++++.|.+.++|+.. +..+..  +.+|....++.++..++... ++++.|+.+++|+....
T Consensus       222 w~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~--y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  222 WACCFLPN--RIITVGEDCTCRVWGVN-GTQLEV--YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             EEEEeccc--eeEEeccceEEEEEecc-cceehh--hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            99999998  89999999999999765 455554  67788888999999999988 99999999999998764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=4.8e-15  Score=126.08  Aligned_cols=304  Identities=13%  Similarity=0.085  Sum_probs=204.3

Q ss_pred             ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      .+.+|.+.|.++.|+.    ++++|++|+.|..+++|++...-..++-+.+ .+.-.+|...|.++.+-...        
T Consensus        51 D~~~H~GCiNAlqFS~----N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI-~~~~~~H~SNIF~L~F~~~N--------  117 (609)
T KOG4227|consen   51 DVREHTGCINALQFSH----NDRFLASGGDDMHGRVWNVDELMVRKTPKPI-GVMEHPHRSNIFSLEFDLEN--------  117 (609)
T ss_pred             hhhhhccccceeeecc----CCeEEeecCCcceeeeechHHHHhhcCCCCc-eeccCccccceEEEEEccCC--------
Confidence            3456888877766655    4789999999999999998532211111110 00112455677777765443        


Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                      ..+.++..++++...++....        +|.++.... .+.|..+..+|-.+.|++.+.++.|.+||.+....-..+..
T Consensus       118 ~~~~SG~~~~~VI~HDiEt~q--------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~  189 (609)
T KOG4227|consen  118 RFLYSGERWGTVIKHDIETKQ--------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL  189 (609)
T ss_pred             eeEecCCCcceeEeeecccce--------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee
Confidence            388899999999999987654        566665432 35899999999999999999999999999976431111100


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec------CCCeEEEEecCCCCEEEEE
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIG  276 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~  276 (430)
                      ..      ..+.....+.|+ +....+|++.+..+-+-+||.+....++....+.      ...-.++.|+|+|+.|++-
T Consensus       190 ~A------N~~~~F~t~~F~-P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  190 PA------NSGKNFYTAEFH-PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             ec------CCCccceeeeec-CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence            00      011445677784 2345688899999999999999866555433221      1223678899999988876


Q ss_pred             eCCCcEEEEEccCCeE-EeeeeCC-----CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC----------Cc------
Q 014154          277 NGSGDLASVDIRTGKL-LGCFIGK-----CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT----------RQ------  334 (430)
Q Consensus       277 ~~d~~i~iwd~~~~~~-~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~----------~~------  334 (430)
                      -....=.+||+.+.++ +..+...     ....+.+++|-.+-. +++|+.+-.|++|.+..          |.      
T Consensus       263 RR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~  341 (609)
T KOG4227|consen  263 RRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP  341 (609)
T ss_pred             hccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCc
Confidence            5555556788877555 3333211     012466777865544 89999999999998742          11      


Q ss_pred             ---eee--EEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          335 ---LLS--AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       335 ---~~~--~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                         .+.  -..++|| ..++..+.|+|...+ ++.+-++.+++|..-..
T Consensus       342 ~~~~i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~  389 (609)
T KOG4227|consen  342 SEIFIEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRL  389 (609)
T ss_pred             hhheecceeEEEecc-cccccceeecCCcceEeccchhhheeccccccC
Confidence               010  0126788 677899999998888 88888999999976543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=1e-14  Score=129.98  Aligned_cols=277  Identities=14%  Similarity=0.135  Sum_probs=181.4

Q ss_pred             eeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154           54 VLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (430)
                      +..+..  +|||+|+ |+|...-.|++||+.+-.  ..|..|..       ..++.+.+...+-       ...+.--.|
T Consensus        54 st~ik~--s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlD-------ae~V~feiLsDD~-------SK~v~L~~D  115 (703)
T KOG2321|consen   54 STRIKV--SPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLD-------AEVVDFEILSDDY-------SKSVFLQND  115 (703)
T ss_pred             cceeEe--cCCCcEEEEecccCCceEEEEcccce--eeeeeccc-------ccceeEEEeccch-------hhheEeecC
Confidence            455666  8899986 557788899999986543  23333211       2333333333222       112211222


Q ss_pred             CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (430)
Q Consensus       133 g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  212 (430)
                      ..+.+..-          .|  +-+.+.-...-..++++.-..-|+.++....|+-++++.|+-+..+....        
T Consensus       116 R~IefHak----------~G--~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~--------  175 (703)
T KOG2321|consen  116 RTIEFHAK----------YG--RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS--------  175 (703)
T ss_pred             ceeeehhh----------cC--eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc--------
Confidence            22222210          00  00111111223455665544445555556689999999998877766543        


Q ss_pred             CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee------cCC-----CeEEEEecCCCCEEEEEeCCCc
Q 014154          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF------RET-----PIKAVAEEPDSFNIYIGNGSGD  281 (430)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~-----~i~~~~~sp~~~~l~~~~~d~~  281 (430)
                       ..++++..  ++-..+|++|+.+|.|..||.+... .+..+..      |.+     .|+++.|+.+|-.+++|+.+|.
T Consensus       176 -~~lN~v~i--n~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~  251 (703)
T KOG2321|consen  176 -GELNVVSI--NEEHGLLACGTEDGVVEFWDPRDKS-RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGS  251 (703)
T ss_pred             -ccceeeee--cCccceEEecccCceEEEecchhhh-hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCc
Confidence             56788888  7888899999999999999999743 3444432      222     4999999999999999999999


Q ss_pred             EEEEEccCCeEEeeeeCCCCCCeEEEEecCC--CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc
Q 014154          282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPT--LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV  359 (430)
Q Consensus       282 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  359 (430)
                      +.|||+++.+++..-.....-+|..+.|.+.  +..|++. ....++|||-.+|+....+.   . ...+..+++-|++-
T Consensus       252 v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE---p-t~~lND~C~~p~sG  326 (703)
T KOG2321|consen  252 VLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE---P-TSDLNDFCFVPGSG  326 (703)
T ss_pred             EEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc---c-cCCcCceeeecCCc
Confidence            9999999998865443322668999999876  3455554 45689999999999988753   1 22368888888876


Q ss_pred             c-cccCCCCceEecCCCCC
Q 014154          360 A-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       360 ~-~~~~~d~~i~~~~~~~~  377 (430)
                      + +++..++.+..|-.+.+
T Consensus       327 m~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             eEEEecCCCcceeEEcccc
Confidence            6 88888888877766543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.69  E-value=1.7e-15  Score=125.63  Aligned_cols=202  Identities=11%  Similarity=0.135  Sum_probs=160.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  238 (430)
                      ..+|+|.+|+++...++++.....|.||......   ...++..|.         ..|+.+.|  .|..+.|++|+.|..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd---------~~vtgvdW--ap~snrIvtcs~drn   78 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD---------KIVTGVDW--APKSNRIVTCSHDRN   78 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC---------cceeEEee--cCCCCceeEccCCCC
Confidence            4789999999999999999999999999986544   455555554         67999999  899999999999999


Q ss_pred             EEEEECCCCC--cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE---eeeeCCCCCCeEEEEecCCC
Q 014154          239 VRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL---GCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       239 i~iwd~~~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~  313 (430)
                      -++|....+.  ++...+..++...+++.|+|.++.|++|+....|.+|-++...--   ..++..+.+.|+++.|+|++
T Consensus        79 ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn  158 (361)
T KOG1523|consen   79 AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN  158 (361)
T ss_pred             ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence            9999985432  355666678889999999999999999999999999887654321   12222237789999999999


Q ss_pred             CeEEEEeCCCcEEEEECC-----C-------------CceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154          314 PIIASCGLDSYLRFWDIK-----T-------------RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       314 ~~l~s~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      -+|+.|+.|+..|||..-     +             |+++..+  . ...+.+..+.|+|+|.. +..+.|..+.+-|.
T Consensus       159 VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~--~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da  235 (361)
T KOG1523|consen  159 VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA--S-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA  235 (361)
T ss_pred             ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh--c-cCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence            999999999999999641     1             1222221  1 23566899999999998 88999999999887


Q ss_pred             CCC
Q 014154          375 NDT  377 (430)
Q Consensus       375 ~~~  377 (430)
                      ...
T Consensus       236 ~~p  238 (361)
T KOG1523|consen  236 AGP  238 (361)
T ss_pred             CCC
Confidence            654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=8.9e-14  Score=130.11  Aligned_cols=321  Identities=12%  Similarity=0.053  Sum_probs=207.2

Q ss_pred             CCCceEEEEccCCCCCcceeeeec--CCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-Ccccceeec-cCCC
Q 014154           22 SLGLIKVIEARGEHGGVPKVVERW--GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISN-AGDS   97 (430)
Q Consensus        22 ~dg~i~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~-~~~~   97 (430)
                      -+..+.+|+...+.   .......  ..|.-.  +.++++  +|.++++|+|..||.|.+|.--. ...-.+... ||. 
T Consensus       179 ~~~~~~~~~v~~~~---~~~~~~~~~~~Htf~--~t~~~~--spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH-  250 (792)
T KOG1963|consen  179 HMCKIHIYFVPKHT---KHTSSRDITVHHTFN--ITCVAL--SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH-  250 (792)
T ss_pred             EeeeEEEEEecccc---eeeccchhhhhhccc--ceeEEe--ccccceEEEeccCCcEEEEeccccccccccceEEEec-
Confidence            44567888887741   1111111  124444  344445  78899999999999999996422 111111111 222 


Q ss_pred             CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEE
Q 014154           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS  177 (430)
Q Consensus        98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l  177 (430)
                           .+.+.++.+....        ..+++|+..+.+.+|.++...          +-|-..-+..|..+.++|++.+.
T Consensus       251 -----~~~V~~L~fS~~G--------~~LlSGG~E~VLv~Wq~~T~~----------kqfLPRLgs~I~~i~vS~ds~~~  307 (792)
T KOG1963|consen  251 -----HDEVNSLSFSSDG--------AYLLSGGREGVLVLWQLETGK----------KQFLPRLGSPILHIVVSPDSDLY  307 (792)
T ss_pred             -----ccccceeEEecCC--------ceEeecccceEEEEEeecCCC----------cccccccCCeeEEEEEcCCCCeE
Confidence                 3466666665544        499999999999999987543          34444567899999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeeeEeeCCCCCC--CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe
Q 014154          178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKN--SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (430)
Q Consensus       178 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  255 (430)
                      +....|+.|.+....+......+.+....  .+.....+-.+.+++  +|..+.++-.+..|.|.+||+.+... +..+.
T Consensus       308 sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i--dpr~~~~vln~~~g~vQ~ydl~td~~-i~~~~  384 (792)
T KOG1963|consen  308 SLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI--DPRTNSLVLNGHPGHVQFYDLYTDST-IYKLQ  384 (792)
T ss_pred             EEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE--cCCCCceeecCCCceEEEEeccccce-eeeEE
Confidence            99999999999988665554444433221  001111244566777  77777888889999999999987543 33322


Q ss_pred             e-----------cCCCeEEEEecCCCCEEEEEe--------CC--CcEEEEEccCCe----EEeeeeCCCCCCeEEEEe-
Q 014154          256 F-----------RETPIKAVAEEPDSFNIYIGN--------GS--GDLASVDIRTGK----LLGCFIGKCSGSIRSIAR-  309 (430)
Q Consensus       256 ~-----------~~~~i~~~~~sp~~~~l~~~~--------~d--~~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~-  309 (430)
                      .           +.-.++.++.+..|.+++|.-        .|  ..+++|-.....    +...+...|...+...++ 
T Consensus       385 v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~  464 (792)
T KOG1963|consen  385 VCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFL  464 (792)
T ss_pred             EEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEe
Confidence            1           123567788888899998873        22  347788654332    333333323555444444 


Q ss_pred             cCCCC-eEEEEeCCCcEEEEECCCCce------eeEEE--eeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154          310 HPTLP-IIASCGLDSYLRFWDIKTRQL------LSAVF--LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       310 ~~~~~-~l~s~~~dg~i~iwd~~~~~~------~~~~~--~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                      +|... ..++++.||.++||-+...+.      .....  -.-| ...+.+++|+.||.+++.+.|+.|.+||....
T Consensus       465 ~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~-k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  465 NPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH-KTPITALCFSQDGSLLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             cCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc-cCcccchhhcCCCcEEEEecCCEEEEecCCCh
Confidence            44433 789999999999998843221      11110  1113 44568999999999999999999999999874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.68  E-value=1.6e-13  Score=124.21  Aligned_cols=281  Identities=18%  Similarity=0.174  Sum_probs=175.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      +-+++-..+|.|.|.|..+.     +++.++......  .....+  +|||+++++.+.||.|.++|+.+++.+.+++. 
T Consensus         7 l~~V~~~~~~~v~viD~~t~-----~~~~~i~~~~~~--h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-   76 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATN-----KVVARIPTGGAP--HAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKV-   76 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT------SEEEEEE-STTE--EEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--
T ss_pred             EEEEEecCCCEEEEEECCCC-----eEEEEEcCCCCc--eeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEec-
Confidence            34567778899999999987     777777654332  223334  88999999999999999999987774443321 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                                                                                         +.....++++++|
T Consensus        77 -------------------------------------------------------------------G~~~~~i~~s~DG   89 (369)
T PF02239_consen   77 -------------------------------------------------------------------GGNPRGIAVSPDG   89 (369)
T ss_dssp             -------------------------------------------------------------------SSEEEEEEE--TT
T ss_pred             -------------------------------------------------------------------CCCcceEEEcCCC
Confidence                                                                               2345678889999


Q ss_pred             CEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcceE
Q 014154          175 KFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       175 ~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~  252 (430)
                      ++++++. ..+.+.++|.++.+.+..+.......-.  ....+..+..  +|....++..-. .+.|.+.|......+..
T Consensus        90 ~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~--~~~Rv~aIv~--s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~  165 (369)
T PF02239_consen   90 KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG--PESRVAAIVA--SPGRPEFVVNLKDTGEIWVVDYSDPKNLKV  165 (369)
T ss_dssp             TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT--S---EEEEEE---SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred             CEEEEEecCCCceeEeccccccceeecccccccccc--cCCCceeEEe--cCCCCEEEEEEccCCeEEEEEeccccccce
Confidence            9998775 5889999999999888876543211100  1245666666  666665555444 58888889887544333


Q ss_pred             EEeecCCCeEEEEecCCCCEEEEE-eCCCcEEEEEccCCeEEeeeeC-------------C-------------------
Q 014154          253 SFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIG-------------K-------------------  299 (430)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~-------------~-------------------  299 (430)
                      .............|+|++++++++ ..++.|-++|..+++.+..+..             |                   
T Consensus       166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~  245 (369)
T PF02239_consen  166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL  245 (369)
T ss_dssp             EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred             eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence            333344567889999999988775 4567788888887665443210             0                   


Q ss_pred             ----------------------CCCCeEEEEecCCCCeEEEE----eCCCcEEEEECCCCceeeEEEeeccccceEEeee
Q 014154          300 ----------------------CSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSA  353 (430)
Q Consensus       300 ----------------------~~~~v~~i~~~~~~~~l~s~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  353 (430)
                                            ...+ ..+..||++++|...    ...+.|.++|.++.+.+..+  .......+..+.
T Consensus       246 ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i--~~~~~~~~~h~e  322 (369)
T PF02239_consen  246 IGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTI--TPGPGKRVVHME  322 (369)
T ss_dssp             EE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-H--HHHHT--EEEEE
T ss_pred             ccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEE--eccCCCcEeccE
Confidence                                  1223 556778999999888    45589999999999777763  222233368999


Q ss_pred             ccccccc--cccCCCC-ceEecCCCCCcc
Q 014154          354 FADKEVA--NAAADAP-MLEIQNGNDTQE  379 (430)
Q Consensus       354 ~s~~g~~--~~~~~d~-~i~~~~~~~~~~  379 (430)
                      |+++|+.  ++.-..+ .|.+||....++
T Consensus       323 f~~dG~~v~vS~~~~~~~i~v~D~~Tl~~  351 (369)
T PF02239_consen  323 FNPDGKEVWVSVWDGNGAIVVYDAKTLKE  351 (369)
T ss_dssp             E-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred             ECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence            9999997  5544444 899999988644

...

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.68  E-value=4.5e-15  Score=131.16  Aligned_cols=209  Identities=17%  Similarity=0.160  Sum_probs=156.3

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      +.++..+.||.+.|.+- .++....+..|        ...+.+-. |+.+.       .-++++++||.+.+|+-     
T Consensus        76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH--------~~A~~~gR-W~~dG-------tgLlt~GEDG~iKiWSr-----  133 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNK-SARVERSISAH--------AAAISSGR-WSPDG-------AGLLTAGEDGVIKIWSR-----  133 (737)
T ss_pred             ceEEEEcCCceEEEecc-cchhhhhhhhh--------hhhhhhcc-cCCCC-------ceeeeecCCceEEEEec-----
Confidence            46888899999999974 67766665543        33555444 44433       47899999999999983     


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                           .|.++.--......|.|++|.|+.+.++.+..+ .+.+=.+.....+...+.|.         +-|.++.|  ++
T Consensus       134 -----sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~i~WkAHD---------GiiL~~~W--~~  196 (737)
T KOG1524|consen  134 -----SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKIIRWRAHD---------GLVLSLSW--ST  196 (737)
T ss_pred             -----cchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecccccceeEEeccC---------cEEEEeec--Cc
Confidence                 234443334556889999999988877765544 67777776666666666665         67999999  88


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  305 (430)
                      ..+++++|++|-..++||...  .++..-..|+.+|++++|+|+ ..++.++. ++++            |.....+.|.
T Consensus       197 ~s~lI~sgGED~kfKvWD~~G--~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p~~GSif  260 (737)
T KOG1524|consen  197 QSNIIASGGEDFRFKIWDAQG--ANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSPRVGSIF  260 (737)
T ss_pred             cccceeecCCceeEEeecccC--cccccCChhccceeeeeeccc-cceeeeee-eeee------------ecCCCccceE
Confidence            999999999999999999874  346777779999999999999 56666653 3333            3333367899


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEE
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd  329 (430)
                      .++||+||..++.|...|.+.+=.
T Consensus       261 nlsWS~DGTQ~a~gt~~G~v~~A~  284 (737)
T KOG1524|consen  261 NLSWSADGTQATCGTSTGQLIVAY  284 (737)
T ss_pred             EEEEcCCCceeeccccCceEEEee
Confidence            999999999999999988776543

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.67  E-value=1.2e-14  Score=128.64  Aligned_cols=233  Identities=12%  Similarity=0.101  Sum_probs=150.4

Q ss_pred             CceEEEEccCCCCCcceee-eecCCCCCCcceeeee-ecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCC
Q 014154           24 GLIKVIEARGEHGGVPKVV-ERWGDPHSSNCVLAAS-IDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP  101 (430)
Q Consensus        24 g~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  101 (430)
                      ..+.+|+...+......+. ..|.+.  ...+.+|. +...|.+--|+.|-.-|.|.+.|....+....+..-..    -
T Consensus       144 ~~lyv~~~~g~~~~~~pi~k~~y~gt--~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~----i  217 (636)
T KOG2394|consen  144 RELYVYSYRGAADLSKPIDKREYKGT--SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERL----I  217 (636)
T ss_pred             CeEEEEEccCcchhccchhhhcccCC--CCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhccc----c
Confidence            3678888775311111111 122221  22244442 23355666688888889999999866332222221000    1


Q ss_pred             CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe
Q 014154          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (430)
Q Consensus       102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~  181 (430)
                      ....++++.|.+...       ..++++..+|.+.+++......                 ..-.+....+++..+....
T Consensus       218 ~ktsvT~ikWvpg~~-------~~Fl~a~~sGnlyly~~~~~~~-----------------~t~p~~~~~k~~~~f~i~t  273 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSD-------SLFLVAHASGNLYLYDKEIVCG-----------------ATAPSYQALKDGDQFAILT  273 (636)
T ss_pred             cccceEEEEEEeCCC-------ceEEEEEecCceEEeecccccc-----------------CCCCcccccCCCCeeEEee
Confidence            124777888888766       7888888888888886532110                 0001111122444443322


Q ss_pred             CC-----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee
Q 014154          182 KG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (430)
Q Consensus       182 ~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  256 (430)
                      .-     +-+.-|-+-           .         ..|...+|  +|||.+||+.+.||.++|||..+.+ ++..++.
T Consensus       274 ~ksk~~rNPv~~w~~~-----------~---------g~in~f~F--S~DG~~LA~VSqDGfLRvF~fdt~e-Llg~mkS  330 (636)
T KOG2394|consen  274 SKSKKTRNPVARWHIG-----------E---------GSINEFAF--SPDGKYLATVSQDGFLRIFDFDTQE-LLGVMKS  330 (636)
T ss_pred             eeccccCCccceeEec-----------c---------ccccceeE--cCCCceEEEEecCceEEEeeccHHH-HHHHHHh
Confidence            11     122222221           1         45788889  8899999999999999999999844 3555554


Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (430)
Q Consensus       257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~  310 (430)
                      --+...|++|||||+||++|++|..|.||.+...+++..-++| .++|..++|.
T Consensus       331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH-kSWVs~VaFD  383 (636)
T KOG2394|consen  331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH-KSWVSVVAFD  383 (636)
T ss_pred             hccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc-ccceeeEeec
Confidence            5578999999999999999999999999999999999999998 9999999998

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2e-15  Score=131.89  Aligned_cols=288  Identities=16%  Similarity=0.175  Sum_probs=199.6

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeee-ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVE-RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ..+++|+.|-.|.+||+..+     +... ...+|...+.-.-  |-...+..-+++.+.||.|++=.+.........+.
T Consensus       155 d~l~SgSDD~~vv~WdW~~~-----~~~l~f~SGH~~NvfQaK--FiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r  227 (559)
T KOG1334|consen  155 DVLASGSDDLQVVVWDWVSG-----SPKLSFESGHCNNVFQAK--FIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR  227 (559)
T ss_pred             ceeeccCccceEEeehhhcc-----Ccccccccccccchhhhh--ccCCCCCcCceeccccCceeeeeeccccceeccee
Confidence            57899999999999999886     3333 3455766643333  32233445699999999999987654332221111


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC---ceEEEEE
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG---TIAFSKV  170 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~---~i~~~~~  170 (430)
                           ..++.+++..+.+-+...       ..|++++.++.+.-.++.....+.     .+. -.-.+..   ....++.
T Consensus       228 -----l~~h~g~vhklav~p~sp-------~~f~S~geD~~v~~~Dlr~~~pa~-----~~~-cr~~~~~~~v~L~~Ia~  289 (559)
T KOG1334|consen  228 -----LAPHEGPVHKLAVEPDSP-------KPFLSCGEDAVVFHIDLRQDVPAE-----KFV-CREADEKERVGLYTIAV  289 (559)
T ss_pred             -----cccccCccceeeecCCCC-------CcccccccccceeeeeeccCCccc-----eee-eeccCCccceeeeeEec
Confidence                 235566777777777665       689999999988877765443211     111 1111122   4667888


Q ss_pred             cCC-CCEEEEEeCCCeEEEEECCCCee------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          171 DIS-EKFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       171 ~~~-~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      +|. ..++++++.|..+++||.+.-..      +..+-.+.   +.-..+..|++++|  +.++.-|+++..|-.|+++.
T Consensus       290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h---l~~d~~v~ITgl~Y--sh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH---LVEDDPVNITGLVY--SHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc---ccccCcccceeEEe--cCCccceeeeecccceEEec
Confidence            884 45899999999999999864221      12221111   11123467999999  76777777778898999995


Q ss_pred             CCCCC-----------cceE-EEeecC--CCeEEEEe-cCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEE
Q 014154          244 TSAQR-----------RPVM-SFDFRE--TPIKAVAE-EPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA  308 (430)
Q Consensus       244 ~~~~~-----------~~~~-~~~~~~--~~i~~~~~-sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~  308 (430)
                      -..+.           ..+. .+++|.  ..|..+.| -|...|+++|+.-|.|.||+-.+++.+..+.+. ..-|+||.
T Consensus       365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-r~VVNCLE  443 (559)
T KOG1334|consen  365 KSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-RHVVNCLE  443 (559)
T ss_pred             cccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-cceEeccC
Confidence            43211           1122 367774  35777765 688899999999999999999999999999887 56899999


Q ss_pred             ecCCCCeEEEEeCCCcEEEEECCCC
Q 014154          309 RHPTLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       309 ~~~~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      -+|--+.||++|-|..|+||...+.
T Consensus       444 pHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  444 PHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             CCCCCchhhccCCccceeeecCCcc
Confidence            9999999999999999999987443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.65  E-value=5e-14  Score=115.91  Aligned_cols=116  Identities=21%  Similarity=0.338  Sum_probs=93.1

Q ss_pred             cceeEEEEeecCCCCEEEEE--eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEcc
Q 014154          214 TWFTSAAFLSIDDHRKFVAG--TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIR  288 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~  288 (430)
                      ..|.+++|  +|+++.|++.  ..+..|.+||++. . ++..+  +...+..+.|+|+|++|++++.+   |.|.+||.+
T Consensus        60 ~~I~~~~W--sP~g~~favi~g~~~~~v~lyd~~~-~-~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~  133 (194)
T PF08662_consen   60 GPIHDVAW--SPNGNEFAVIYGSMPAKVTLYDVKG-K-KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR  133 (194)
T ss_pred             CceEEEEE--CcCCCEEEEEEccCCcccEEEcCcc-c-EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            56999999  8999887554  4677999999973 3 34444  45678899999999999998754   669999999


Q ss_pred             CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC------CCcEEEEECCCCceeeEE
Q 014154          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~  339 (430)
                      +.+.+..+..   ..++.++|+|+|++|+++..      |+.++||+.. |+.+...
T Consensus       134 ~~~~i~~~~~---~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  134 KKKKISTFEH---SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             CCEEeecccc---CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence            9888877754   35789999999999999864      7889999985 7776653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=3e-14  Score=133.20  Aligned_cols=192  Identities=10%  Similarity=0.017  Sum_probs=132.7

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-C
Q 014154          160 CASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-N  235 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~  235 (430)
                      .+...+...+|+|+++.|+..+.+   ..|++||+.+++..... ...         .....++|  +|+++.|+.++ .
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~---------g~~~~~~w--SPDG~~La~~~~~  268 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-SFR---------GHNGAPAF--SPDGSRLAFASSK  268 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-cCC---------CccCceeE--CCCCCEEEEEEec
Confidence            345678999999999999987654   36999999887543221 111         12335688  89999888765 6


Q ss_pred             CCcEEEE--ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCC-eEEeeeeCCCCCCeEEEEecC
Q 014154          236 DHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG-KLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       236 dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      +|.+.||  |+.++.  ...+..+...+.+..|+|||+.|+..+ .++...||++... .....+ .+ ..  ....|+|
T Consensus       269 ~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~Sp  342 (429)
T PRK01742        269 DGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISA  342 (429)
T ss_pred             CCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCC
Confidence            7765555  665533  455666767788999999999877655 5678888876532 222223 33 33  4578999


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      +|++|+..+.++ +.+||+.+++....  ....   ....++|+|||++ ++++.++...+|...
T Consensus       343 DG~~ia~~~~~~-i~~~Dl~~g~~~~l--t~~~---~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        343 DGKTLVMINGDN-VVKQDLTSGSTEVL--SSTF---LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             CCCEEEEEcCCC-EEEEECCCCCeEEe--cCCC---CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            999998887765 66699998876532  1121   1357889999998 777788888877653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3.6e-15  Score=132.09  Aligned_cols=209  Identities=14%  Similarity=0.264  Sum_probs=157.5

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  239 (430)
                      .|.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+...        |...|.++.|.|..+.+++++|..|..|
T Consensus        48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~Tg--------HtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTG--------HTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecc--------cccceeEEeeeccCCCeEEEeccCcceE
Confidence            67899999999999999999999999999999877776665432        3477999999877788899999999999


Q ss_pred             EEEECCC---------CCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeE-------Ee---eeeCC
Q 014154          240 RLYDTSA---------QRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-------LG---CFIGK  299 (430)
Q Consensus       240 ~iwd~~~---------~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~-------~~---~~~~~  299 (430)
                      +++|+..         ...+...+..|...|.-|+-.|++ +.+.++++||+|+-||++....       ..   .+...
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            9999985         233456667788899999999998 8899999999999999986321       11   11111


Q ss_pred             CCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCC--------Cc----------eeeEEEeecccc----------ceEE
Q 014154          300 CSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKT--------RQ----------LLSAVFLKQHLN----------EVVF  350 (430)
Q Consensus       300 ~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~--------~~----------~~~~~~~~~~~~----------~~v~  350 (430)
                       --...++..+|.. .+|+.|+.|-..++||.+.        +.          ++.- +..+|..          ..++
T Consensus       200 -lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y-f~p~hlkn~~gn~~~~~~~~t  277 (758)
T KOG1310|consen  200 -LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY-FSPGHLKNSQGNLDRYITCCT  277 (758)
T ss_pred             -hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe-ecCccccCcccccccceeeeE
Confidence             2356788999966 5789999999999999421        11          1222 2334421          1256


Q ss_pred             eeeccccccc-cccCCCCceEecCCCCCc
Q 014154          351 DSAFADKEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       351 ~~~~s~~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                      -+.|+|+|.- +..-....|++|+.+..+
T Consensus       278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~~  306 (758)
T KOG1310|consen  278 YVTFNPNGTELLVSWGGEHVYLFDVNEDK  306 (758)
T ss_pred             EEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence            7899999986 544455678888876643

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.61  E-value=5.7e-13  Score=120.67  Aligned_cols=294  Identities=12%  Similarity=0.083  Sum_probs=171.6

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee-cCCeEEEecCCCCcccceeecc
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR-KNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~-~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .+++++.||.|.++|+.+.     +++.++.....   ...+.+  +|||++++++. ..+.+.|+|..+.+++..+...
T Consensus        50 ~~yv~~rdg~vsviD~~~~-----~~v~~i~~G~~---~~~i~~--s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~  119 (369)
T PF02239_consen   50 YLYVANRDGTVSVIDLATG-----KVVATIKVGGN---PRGIAV--SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG  119 (369)
T ss_dssp             EEEEEETTSEEEEEETTSS-----SEEEEEE-SSE---EEEEEE----TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred             EEEEEcCCCeEEEEECCcc-----cEEEEEecCCC---cceEEE--cCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence            4677788999999999997     67777764333   344445  68899998865 6899999999999988887652


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc-CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                      .... ......+.++...+...        .++.+.. .+.+.+.+  ...      ...+..-.+..........|+|+
T Consensus       120 ~~~~-~~~~~Rv~aIv~s~~~~--------~fVv~lkd~~~I~vVd--y~d------~~~~~~~~i~~g~~~~D~~~dpd  182 (369)
T PF02239_consen  120 GMPV-DGPESRVAAIVASPGRP--------EFVVNLKDTGEIWVVD--YSD------PKNLKVTTIKVGRFPHDGGFDPD  182 (369)
T ss_dssp             EE-T-TTS---EEEEEE-SSSS--------EEEEEETTTTEEEEEE--TTT------SSCEEEEEEE--TTEEEEEE-TT
T ss_pred             cccc-cccCCCceeEEecCCCC--------EEEEEEccCCeEEEEE--ecc------ccccceeeecccccccccccCcc
Confidence            1100 00223444444433322        3444444 35554443  222      12333334445677888999999


Q ss_pred             CCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCC----CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154          174 EKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKN----SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       174 ~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  248 (430)
                      +++++.+ ..++.|.++|..+++.+..+......    ...+.|+..  ...|.....+...++.-....+.+||....+
T Consensus       183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~--g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk  260 (369)
T PF02239_consen  183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF--GPVWATSGLGYFAIPLIGTDPVSVHDDYAWK  260 (369)
T ss_dssp             SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT--EEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred             cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc--ceEEeeccccceecccccCCccccchhhcCe
Confidence            9988765 45678999999998877655432110    011111111  1112112223333333333466678888744


Q ss_pred             cceEEEeecCCCeEEEEecCCCCEEEEE----eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC--
Q 014154          249 RPVMSFDFRETPIKAVAEEPDSFNIYIG----NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD--  322 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~----~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d--  322 (430)
                       .+..+.....+ ..+..+|+++++++.    ...+.|.++|.++.+.+..+.......+..+.|+++|+++..+..+  
T Consensus       261 -vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~  338 (369)
T PF02239_consen  261 -VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGN  338 (369)
T ss_dssp             -EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred             -EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence             57888876666 778889999999998    4458999999999988888764313358999999999976655443  


Q ss_pred             CcEEEEECCCCceeeEEE
Q 014154          323 SYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       323 g~i~iwd~~~~~~~~~~~  340 (430)
                      +.|.|||..+.+.+..+.
T Consensus       339 ~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  339 GAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             TEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCcEEEEEEE
Confidence            369999999999999864

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=8.7e-13  Score=111.46  Aligned_cols=252  Identities=13%  Similarity=0.097  Sum_probs=165.2

Q ss_pred             eeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCe
Q 014154           55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGK  134 (430)
Q Consensus        55 ~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~  134 (430)
                      -.++|  ++.-..+|++..|-+|++|+-.. +....++.       .....+.++.|-+...       ..++.+.. +-
T Consensus       102 r~~aW--hqH~~~fava~nddvVriy~kss-t~pt~Lks-------~sQrnvtclawRPlsa-------selavgCr-~g  163 (445)
T KOG2139|consen  102 RGVAW--HQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS-------VSQRNVTCLAWRPLSA-------SELAVGCR-AG  163 (445)
T ss_pred             eeEee--chhhhhhhhhccCcEEEEeccCC-CCCceecc-------hhhcceeEEEeccCCc-------ceeeeeec-ce
Confidence            34555  44444578899999999999755 44444443       2346788888877665       34555554 45


Q ss_pred             eEEEEeeecCc----cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCC
Q 014154          135 ASMRSIEVTKV----SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (430)
Q Consensus       135 ~~v~~~~~~~~----~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~  209 (430)
                      +.+|.....-.    ..+.......++.......|+++.|++++..+++++. +..|.|||.+++..+.-....      
T Consensus       164 IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g------  237 (445)
T KOG2139|consen  164 ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG------  237 (445)
T ss_pred             eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC------
Confidence            78898764432    1122233344444444578999999999999998875 567999999987765433111      


Q ss_pred             CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (430)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~  289 (430)
                         ...+.-+.|  +||+.+|+.++.|+..++|....... ........+.|...+|+|+|++|+.... +.=++|.+..
T Consensus       238 ---lgg~slLkw--SPdgd~lfaAt~davfrlw~e~q~wt-~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f  310 (445)
T KOG2139|consen  238 ---LGGFSLLKW--SPDGDVLFAATCDAVFRLWQENQSWT-KERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTF  310 (445)
T ss_pred             ---CCceeeEEE--cCCCCEEEEecccceeeeehhcccce-ecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence               155888999  99999999999999999997665332 2223334468999999999988776543 3334554431


Q ss_pred             Ce---------------EEeeee------C--CCCCCeEEEEecCCCCeEEEEeCCC--------cEEEEECCCCceee
Q 014154          290 GK---------------LLGCFI------G--KCSGSIRSIARHPTLPIIASCGLDS--------YLRFWDIKTRQLLS  337 (430)
Q Consensus       290 ~~---------------~~~~~~------~--~~~~~v~~i~~~~~~~~l~s~~~dg--------~i~iwd~~~~~~~~  337 (430)
                      ..               ++..+.      +  -..+++.+++|.|.|.+|++.-..+        .|.+||.+..-.+.
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve  389 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE  389 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence            10               011110      1  0145789999999999999875433        46778876544443

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.61  E-value=5.3e-15  Score=137.16  Aligned_cols=268  Identities=10%  Similarity=0.067  Sum_probs=196.0

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      -.++||+.|-.+|||..+++     .++....+|.+.++-++.+..    ..++|+++.|..|++|.+.++.++..+.+|
T Consensus       203 ~~Iitgsdd~lvKiwS~et~-----~~lAs~rGhs~ditdlavs~~----n~~iaaaS~D~vIrvWrl~~~~pvsvLrgh  273 (1113)
T KOG0644|consen  203 RYIITGSDDRLVKIWSMETA-----RCLASCRGHSGDITDLAVSSN----NTMIAAASNDKVIRVWRLPDGAPVSVLRGH  273 (1113)
T ss_pred             ceEeecCccceeeeeeccch-----hhhccCCCCccccchhccchh----hhhhhhcccCceEEEEecCCCchHHHHhcc
Confidence            46899999999999998887     788899999999888887763    347899999999999999999999888774


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                              .+.++++.+.+..            +.+.+|++++|+..+.+....     -+-.....+..+.++.|-.++
T Consensus       274 --------tgavtaiafsP~~------------sss~dgt~~~wd~r~~~~~y~-----prp~~~~~~~~~~s~~~~~~~  328 (1113)
T KOG0644|consen  274 --------TGAVTAIAFSPRA------------SSSDDGTCRIWDARLEPRIYV-----PRPLKFTEKDLVDSILFENNG  328 (1113)
T ss_pred             --------ccceeeeccCccc------------cCCCCCceEeccccccccccC-----CCCCCcccccceeeeeccccc
Confidence                    4577777765432            467788888888764432000     000011122445566677778


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      ..+++++.|+.-..|.+.....      +.         ..+.-+.+. +....+.+++-.+..+++|++.++. ..+.+
T Consensus       329 ~~f~Tgs~d~ea~n~e~~~l~~------~~---------~~lif~t~s-sd~~~~~~~ar~~~~~~vwnl~~g~-l~H~l  391 (1113)
T KOG0644|consen  329 DRFLTGSRDGEARNHEFEQLAW------RS---------NLLIFVTRS-SDLSSIVVTARNDHRLCVWNLYTGQ-LLHNL  391 (1113)
T ss_pred             cccccccCCcccccchhhHhhh------hc---------cceEEEecc-ccccccceeeeeeeEeeeeecccch-hhhhh
Confidence            8889999999888877643111      00         011111121 1122466777788889999999976 47888


Q ss_pred             eecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154          255 DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       255 ~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      .+|...+..+.++|-. ....+++.||...|||+-.|.+++.+... ...+..-+||++|..++....-|.++|.....+
T Consensus       392 ~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs  470 (1113)
T KOG0644|consen  392 MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQS  470 (1113)
T ss_pred             cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCC
Confidence            9999999999999965 45568899999999999999887766544 456777899999999888888899999876544


Q ss_pred             c
Q 014154          334 Q  334 (430)
Q Consensus       334 ~  334 (430)
                      +
T Consensus       471 ~  471 (1113)
T KOG0644|consen  471 K  471 (1113)
T ss_pred             c
Confidence            3

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.60  E-value=6.8e-14  Score=115.12  Aligned_cols=148  Identities=18%  Similarity=0.264  Sum_probs=107.4

Q ss_pred             EEEEeecCCCCEEEEEeC----------CCcEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEE--eCCCcEEE
Q 014154          218 SAAFLSIDDHRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIG--NGSGDLAS  284 (430)
Q Consensus       218 ~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~--~~d~~i~i  284 (430)
                      .+.|  +++|..|++-..          -+...+|.++....+...+... .++|.+++|+|+++.|++.  ..+..|.+
T Consensus        10 ~~~W--~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen   10 KLHW--QPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEe--cccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            3455  777776554332          2345566664434455555543 4579999999999887654  35679999


Q ss_pred             EEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-
Q 014154          285 VDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-  360 (430)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-  360 (430)
                      ||++ ++.+..+.   ...+..+.|+|+|++|++++.+   |.|.+||+++.+.+....   | . .+..++|+|||++ 
T Consensus        88 yd~~-~~~i~~~~---~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~-~-~~t~~~WsPdGr~~  158 (194)
T PF08662_consen   88 YDVK-GKKIFSFG---TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---H-S-DATDVEWSPDGRYL  158 (194)
T ss_pred             EcCc-ccEeEeec---CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---c-C-cEEEEEEcCCCCEE
Confidence            9996 66666665   3577899999999999998754   669999999888887632   3 2 2589999999999 


Q ss_pred             cccC------CCCceEecCCCC
Q 014154          361 NAAA------DAPMLEIQNGND  376 (430)
Q Consensus       361 ~~~~------~d~~i~~~~~~~  376 (430)
                      +++.      .|+.++||+...
T Consensus       159 ~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  159 ATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEEEeccceeccccEEEEEecC
Confidence            5544      378899999865

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=9.7e-13  Score=122.79  Aligned_cols=169  Identities=11%  Similarity=0.071  Sum_probs=113.1

Q ss_pred             EEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-Cc--EE
Q 014154          167 FSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQ--VR  240 (430)
Q Consensus       167 ~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~  240 (430)
                      .+.|+|+++.|+.. +.+|  .|++||+.+++....... .         ..+....|  +|+++.|+..+.+ +.  |.
T Consensus       247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~---------~~~~~~~w--SPDG~~I~f~s~~~g~~~Iy  314 (429)
T PRK03629        247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-R---------SNNTEPTW--FPDSQNLAYTSDQAGRPQVY  314 (429)
T ss_pred             CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-C---------CCcCceEE--CCCCCEEEEEeCCCCCceEE
Confidence            36789999888765 3344  589999987765432222 1         33567788  8999988777654 44  55


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      ++|+.++.  ...+..+........|+|||++|+..+.+   ..|.+||+.+++.. .+...  .......|+|||++|+
T Consensus       315 ~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~  389 (429)
T PRK03629        315 KVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVI  389 (429)
T ss_pred             EEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEE
Confidence            55666543  34444444456678999999999876644   35888999888653 33322  2335678999999999


Q ss_pred             EEeCCCc---EEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          318 SCGLDSY---LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       318 s~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      .++.++.   ++++++. |+....  +.++ ...+..++|+|
T Consensus       390 ~~s~~~~~~~l~~~~~~-G~~~~~--l~~~-~~~~~~p~Wsp  427 (429)
T PRK03629        390 YSSSQGMGSVLNLVSTD-GRFKAR--LPAT-DGQVKFPAWSP  427 (429)
T ss_pred             EEEcCCCceEEEEEECC-CCCeEE--CccC-CCCcCCcccCC
Confidence            9987764   6777874 555555  4444 34467888887

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=6.5e-13  Score=110.42  Aligned_cols=178  Identities=15%  Similarity=0.194  Sum_probs=131.8

Q ss_pred             CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC--CCe
Q 014154          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE--TPI  261 (430)
Q Consensus       184 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~i  261 (430)
                      +.|.|||-...+++.++.-.          ..|.++.+    ....|++. ..+.|.||...+.-+.++.+....  ..+
T Consensus        75 NkviIWDD~k~~~i~el~f~----------~~I~~V~l----~r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGl  139 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSFN----------SEIKAVKL----RRDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGL  139 (346)
T ss_pred             ceEEEEecccCcEEEEEEec----------cceeeEEE----cCCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCce
Confidence            47999996666666665543          56889998    34456654 467899999985433355444322  223


Q ss_pred             EEEEecCCCCEEEE-EeCCCcEEEEEccCCeE--EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCc-EEEEECCCCceee
Q 014154          262 KAVAEEPDSFNIYI-GNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDSY-LRFWDIKTRQLLS  337 (430)
Q Consensus       262 ~~~~~sp~~~~l~~-~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~  337 (430)
                      .+++-+.+..+|+. |-.-|.|+|-|+...+.  ...+.+| .+.|.+++++.+|.+|||+|..|+ |||||..+|..+.
T Consensus       140 C~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH-~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~  218 (346)
T KOG2111|consen  140 CSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH-DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQ  218 (346)
T ss_pred             EeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc-cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEee
Confidence            33333333344443 33559999999987665  4677888 999999999999999999999996 8999999999999


Q ss_pred             EEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154          338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       338 ~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                      .+ -+|-..+.+.+++|||+..+ +++++-|+++||......
T Consensus       219 E~-RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  219 EL-RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             ee-ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            97 34555667899999999999 888899999999887643

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.59  E-value=4.8e-13  Score=111.65  Aligned_cols=271  Identities=14%  Similarity=0.099  Sum_probs=172.1

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      +|+|+|+|+.+.- .+.|-|..+-+....+...         +.|..+.| ..+..      -.+.....++.+.+|++.
T Consensus        17 Sp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cl---------dki~yieW-~ads~------~ilC~~yk~~~vqvwsl~   79 (447)
T KOG4497|consen   17 SPCGNYIASLSRY-RLVIRDSETLQLHQLFLCL---------DKIVYIEW-KADSC------HILCVAYKDPKVQVWSLV   79 (447)
T ss_pred             CCCCCeeeeeeee-EEEEeccchhhHHHHHHHH---------HHhhheee-eccce------eeeeeeeccceEEEEEee
Confidence            8899999998765 7888888877766655442         34443443 33321      244556778899999986


Q ss_pred             ecCccccCCCcceEEeeecCCCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEE
Q 014154          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAA  220 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  220 (430)
                      ..+-       .-++ + .....+..+.|+|+|+.| .+...+-.|.+|.+.+......-.. .         ..+..++
T Consensus        80 Qpew-------~ckI-d-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p-K---------~~~kg~~  140 (447)
T KOG4497|consen   80 QPEW-------YCKI-D-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP-K---------TNVKGYA  140 (447)
T ss_pred             ccee-------EEEe-c-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc-c---------cCceeEE
Confidence            5431       1111 1 234678899999999655 5566788999999987655432211 1         2356677


Q ss_pred             EeecCCCCEEEEEeC------------------------------------CCcEEEEECCCCCcceEEEeecCCCeEEE
Q 014154          221 FLSIDDHRKFVAGTN------------------------------------DHQVRLYDTSAQRRPVMSFDFRETPIKAV  264 (430)
Q Consensus       221 ~~~~~~~~~l~s~~~------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~  264 (430)
                      |  +|+|++.+.++.                                    +..+.+||.--..+ +.... -.-.+..+
T Consensus       141 f--~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aYe-~~lG~k~v  216 (447)
T KOG4497|consen  141 F--HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAYE-RGLGLKFV  216 (447)
T ss_pred             E--CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeeee-eccceeEE
Confidence            7  777777665543                                    12344555332111 12222 22578899


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEccCCeEEe--------------------------------------------------
Q 014154          265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLG--------------------------------------------------  294 (430)
Q Consensus       265 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~--------------------------------------------------  294 (430)
                      +|+|.+++|++|+.|+.+|+-+--+-+...                                                  
T Consensus       217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y  296 (447)
T KOG4497|consen  217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY  296 (447)
T ss_pred             EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence            999999999999999998875422211110                                                  


Q ss_pred             ----------eeeC-----CCCCCeEEEEecCCCCeEEEEeC--CCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154          295 ----------CFIG-----KCSGSIRSIARHPTLPIIASCGL--DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       295 ----------~~~~-----~~~~~v~~i~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                                .++.     .....+.-++|++|..+++|-..  -+.+-+||++..+....+..    ...|....|.|.
T Consensus       297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ----k~piraf~WdP~  372 (447)
T KOG4497|consen  297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ----KHPIRAFEWDPG  372 (447)
T ss_pred             hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh----ccceeEEEeCCC
Confidence                      0000     01235677999999999988753  35799999998777665321    233688889998


Q ss_pred             ccc-cccCCCCceEecCCCC
Q 014154          358 EVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       358 g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ... +.......+++|....
T Consensus       373 ~prL~vctg~srLY~W~psg  392 (447)
T KOG4497|consen  373 RPRLVVCTGKSRLYFWAPSG  392 (447)
T ss_pred             CceEEEEcCCceEEEEcCCC
Confidence            766 5555566688887644

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.59  E-value=2.8e-15  Score=130.16  Aligned_cols=219  Identities=18%  Similarity=0.194  Sum_probs=171.2

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      ..++.++..|.+..++.....          ..+.+.-...|.++.|-.+.+++|++-.. .++|||- .|..++.++.+
T Consensus       142 rhlllgGrKGHlAa~Dw~t~~----------L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~-y~yvYD~-~GtElHClk~~  209 (545)
T KOG1272|consen  142 RHLLLGGRKGHLAAFDWVTKK----------LHFEINVMETVRDVTFLHNEQFFAVAQKK-YVYVYDN-NGTELHCLKRH  209 (545)
T ss_pred             cEEEecCCccceeeeecccce----------eeeeeehhhhhhhhhhhcchHHHHhhhhc-eEEEecC-CCcEEeehhhc
Confidence            467777777777666543221          12233334678888998888888876554 8999996 46666666554


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~  283 (430)
                                ..|..+.|  -|..-+|++++..|.++.-|+.+++ .+..+....+.+..++-+|-+..+-+|...|+|.
T Consensus       210 ----------~~v~rLeF--LPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS  276 (545)
T KOG1272|consen  210 ----------IRVARLEF--LPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS  276 (545)
T ss_pred             ----------Cchhhhcc--cchhheeeecccCCceEEEeechhh-hhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence                      56888999  5778899999999999999999977 4777777778899999999999999999999999


Q ss_pred             EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccccccc
Q 014154          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAA  363 (430)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~  363 (430)
                      +|.....+++..+..| .++|.+|++.++|.|++|+|.|..++|||++....+.++..    ......+++|..|.++. 
T Consensus       277 lWSP~skePLvKiLcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~SqkglLA~-  350 (545)
T KOG1272|consen  277 LWSPNSKEPLVKILCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQKGLLAL-  350 (545)
T ss_pred             ecCCCCcchHHHHHhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----CCCccccccccccceee-
Confidence            9999999998888888 99999999999999999999999999999998887777533    22346778887766533 


Q ss_pred             CCCCceEecC
Q 014154          364 ADAPMLEIQN  373 (430)
Q Consensus       364 ~~d~~i~~~~  373 (430)
                      +....+.||.
T Consensus       351 ~~G~~v~iw~  360 (545)
T KOG1272|consen  351 SYGDHVQIWK  360 (545)
T ss_pred             ecCCeeeeeh
Confidence            3345677775

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.7e-13  Score=115.56  Aligned_cols=258  Identities=11%  Similarity=0.047  Sum_probs=186.3

Q ss_pred             CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE
Q 014154          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG  180 (430)
Q Consensus       101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~  180 (430)
                      .|.+.|.++.+.+..        ..+++++.+-.+.+|.+...-  ....-++|.+-...|...|.|++|+....++++|
T Consensus        54 ~H~GCiNAlqFS~N~--------~~L~SGGDD~~~~~W~~de~~--~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG  123 (609)
T KOG4227|consen   54 EHTGCINALQFSHND--------RFLASGGDDMHGRVWNVDELM--VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG  123 (609)
T ss_pred             hhccccceeeeccCC--------eEEeecCCcceeeeechHHHH--hhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence            355677778877663        488999999999999975321  1111246777777778899999999999999999


Q ss_pred             eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe--ecC
Q 014154          181 GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRE  258 (430)
Q Consensus       181 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~  258 (430)
                      ..+++|.+.|+++.+.+..+......       +.|..+..  +|..+.|++.+.++.|.+||.+....+...+-  ...
T Consensus       124 ~~~~~VI~HDiEt~qsi~V~~~~~~~-------~~VY~m~~--~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~  194 (609)
T KOG4227|consen  124 ERWGTVIKHDIETKQSIYVANENNNR-------GDVYHMDQ--HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG  194 (609)
T ss_pred             CCcceeEeeecccceeeeeecccCcc-------cceeeccc--CCCCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence            99999999999998888776543311       45777877  78889999999999999999997543333222  223


Q ss_pred             CCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeE-EeeeeC---CC--CCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          259 TPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-LGCFIG---KC--SGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       259 ~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~-~~~~~~---~~--~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      .....+.|+|.. .+|++.+..+-+-+||.+..+. +..+.+   -.  ...-.++.|+|+|..|.+--.-..-.+||+-
T Consensus       195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~  274 (609)
T KOG4227|consen  195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI  274 (609)
T ss_pred             ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence            567788899976 6778888888899999986542 222221   10  1122567899999988887666667788987


Q ss_pred             CCceeeEEEee----cc-ccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154          332 TRQLLSAVFLK----QH-LNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       332 ~~~~~~~~~~~----~~-~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~  378 (430)
                      +.++.. +...    |. ....+-+++|..|-.+++|+++-.|++|..+...
T Consensus       275 S~R~~V-~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~  325 (609)
T KOG4227|consen  275 SQRCFV-LKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAN  325 (609)
T ss_pred             ccccee-EeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCc
Confidence            754432 2122    11 1234678899988888999999999999988654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=5.4e-13  Score=110.87  Aligned_cols=159  Identities=15%  Similarity=0.164  Sum_probs=117.3

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE-EeCCCcE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQV  239 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i  239 (430)
                      ..+|.++.+.+  ..|++.- ++.|+||... +.+.++.+.....       +..+.++.-  ..+..+||. |-.-|.|
T Consensus        94 ~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~N-------PkGlC~~~~--~~~k~~LafPg~k~Gqv  161 (346)
T KOG2111|consen   94 NSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-------PKGLCSLCP--TSNKSLLAFPGFKTGQV  161 (346)
T ss_pred             ccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccC-------CCceEeecC--CCCceEEEcCCCccceE
Confidence            35666666653  4555444 5589999997 4555555543321       122222222  223334443 4456899


Q ss_pred             EEEECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCCCc-EEEEEccCCeEEeeee-CCCCCCeEEEEecCCCCeE
Q 014154          240 RLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPII  316 (430)
Q Consensus       240 ~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l  316 (430)
                      +|-|+..... +-..+..|.+.|.|++++.+|..+|+++..|+ |||||.++|..+.+++ |...+.|++++|||+..+|
T Consensus       162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~L  241 (346)
T KOG2111|consen  162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWL  241 (346)
T ss_pred             EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEE
Confidence            9999986443 34788999999999999999999999999987 8999999999999987 3335689999999999999


Q ss_pred             EEEeCCCcEEEEECCC
Q 014154          317 ASCGLDSYLRFWDIKT  332 (430)
Q Consensus       317 ~s~~~dg~i~iwd~~~  332 (430)
                      +++|.-|+|.||.++.
T Consensus       242 avsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  242 AVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEcCCCeEEEEEeec
Confidence            9999999999998864

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.58  E-value=1.9e-13  Score=113.64  Aligned_cols=244  Identities=10%  Similarity=0.052  Sum_probs=174.9

Q ss_pred             CceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCC
Q 014154          104 DGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG  183 (430)
Q Consensus       104 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  183 (430)
                      .+|.+..+....        ..++.+...+.+.|+.......     -....... .|...|+.+.|+|..+.|++++.|
T Consensus        11 ~pitchAwn~dr--------t~iAv~~~~~evhiy~~~~~~~-----w~~~htls-~Hd~~vtgvdWap~snrIvtcs~d   76 (361)
T KOG1523|consen   11 EPITCHAWNSDR--------TQIAVSPNNHEVHIYSMLGADL-----WEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHD   76 (361)
T ss_pred             CceeeeeecCCC--------ceEEeccCCceEEEEEecCCCC-----ceeceehh-hhCcceeEEeecCCCCceeEccCC
Confidence            366665554433        4788888889999998753320     11223333 467889999999999999999999


Q ss_pred             CeEEEEECCC-Cee--eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc---eEEEeec
Q 014154          184 VEVNVWDLDK-CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFDFR  257 (430)
Q Consensus       184 ~~i~~~d~~~-~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~  257 (430)
                      ..-++|.... +.-  ...+..+         ...++++.|  +|.++.|++|+.-..|.||-+.....-   .+.-+.+
T Consensus        77 rnayVw~~~~~~~WkptlvLlRi---------NrAAt~V~W--sP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi  145 (361)
T KOG1523|consen   77 RNAYVWTQPSGGTWKPTLVLLRI---------NRAATCVKW--SPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI  145 (361)
T ss_pred             CCccccccCCCCeeccceeEEEe---------ccceeeEee--cCcCceEEeccCccEEEEEEEecccceehhhhhCCcc
Confidence            9999999843 321  2222222         256899999  899999999999999999988753321   1122335


Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEEcc------------------CCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIR------------------TGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      .+.|+++.|+|++-+|++|+.|+..++|..-                  -|+++.++... .+.|..+.|+|+|..|+-.
T Consensus       146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~-ggwvh~v~fs~sG~~lawv  224 (361)
T KOG1523|consen  146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS-GGWVHGVLFSPSGNRLAWV  224 (361)
T ss_pred             ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC-CCceeeeEeCCCCCEeeEe
Confidence            6789999999999999999999999999642                  13344455333 6799999999999999999


Q ss_pred             eCCCcEEEEECCCCc-eeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          320 GLDSYLRFWDIKTRQ-LLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       320 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      +.|..+.+-|..... .+..+  ... .-...++.|-.+...+.++.|..=.+|....
T Consensus       225 ~Hds~v~~~da~~p~~~v~~~--~~~-~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~  279 (361)
T KOG1523|consen  225 GHDSTVSFVDAAGPSERVQSV--ATA-QLPLLSVSWISENSVVAAGYDCGPVLFVTDE  279 (361)
T ss_pred             cCCCceEEeecCCCchhccch--hhc-cCCceeeEeecCCceeecCCCCCceEEEecc
Confidence            999999999987654 33332  222 2335788888888888888885555554433

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=4.3e-13  Score=114.39  Aligned_cols=207  Identities=12%  Similarity=0.062  Sum_probs=150.3

Q ss_pred             eeEEeecCCeEEEecCCCCcc----cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC--CeeEEEEe
Q 014154           67 LLAVARKNGLTDILNPLNGDL----RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK--GKASMRSI  140 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~v~~~  140 (430)
                      .|+++-.+|.+.+|....+..    +..+..         ...+..+.-.+...       ..+++|+..  ..+.+|++
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~---------g~g~~~~r~~~~~p-------~Iva~GGke~~n~lkiwdl  180 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT---------GPGLYDVRQTDTDP-------YIVATGGKENINELKIWDL  180 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccccccceeeec---------CCceeeeccCCCCC-------ceEecCchhcccceeeeec
Confidence            577888899999999875442    111111         12333333333333       456667877  78899998


Q ss_pred             eecCccccCCCcceEEeeecC----------CCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCC
Q 014154          141 EVTKVSAESSCSTVKSWNVCA----------SGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNS  207 (430)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~~~~----------~~~i~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~  207 (430)
                      ..+          .++|....          .-.++.+.|-+.  ...|++++.-+.+++||...++ ++..+....   
T Consensus       181 e~~----------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E---  247 (412)
T KOG3881|consen  181 EQS----------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLE---  247 (412)
T ss_pred             ccc----------eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecccc---
Confidence            644          34454321          123567888876  7899999999999999998654 344443332   


Q ss_pred             CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154          208 LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (430)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~  287 (430)
                            ..++++..  .|++++|++|..-+.+..||++.+..+...+.+-.+.|++|..+|..++|++++-|..|||+|+
T Consensus       248 ------~~is~~~l--~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  248 ------NPISSTGL--TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             ------Ccceeeee--cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence                  56888888  7899999999999999999999977655668888899999999999999999999999999999


Q ss_pred             cCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          288 RTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       288 ~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      .+.+++....-  ...+++|-+.++
T Consensus       320 ktrkll~kvYv--Ks~lt~il~~~~  342 (412)
T KOG3881|consen  320 KTRKLLHKVYV--KSRLTFILLRDD  342 (412)
T ss_pred             ccchhhhhhhh--hccccEEEecCC
Confidence            99777655443  345666666443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.55  E-value=2e-12  Score=108.65  Aligned_cols=264  Identities=12%  Similarity=0.106  Sum_probs=159.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC----------cceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS----------NCVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~   84 (430)
                      -+|+||+.+|.|.++.-.....+...+...+..|...          ..+..+.|-...++..++....|.+|++|.+..
T Consensus        38 e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~e  117 (433)
T KOG1354|consen   38 ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRE  117 (433)
T ss_pred             ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeec
Confidence            5799999999999997765422333455556555432          112334443344455677788999999999864


Q ss_pred             CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEE------EEccCCeeEEEEeeecCc---cccCCCcceE
Q 014154           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL------TCTTKGKASMRSIEVTKV---SAESSCSTVK  155 (430)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~v~~~~~~~~---~~~~~~~~i~  155 (430)
                      .....  .+... ........+.++.+--....+      ..+      .....|...|.++....+   ..+++|-.|.
T Consensus       118 r~~k~--~~~~~-~~~~~~~~~~~lr~p~~~~~~------~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRIN  188 (433)
T KOG1354|consen  118 RGSKK--EGYNL-PEEGPPGTITSLRLPVEGRHD------LEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRIN  188 (433)
T ss_pred             ccccc--ccccc-cccCCCCccceeeceeecccc------ceeeeeeeeeccccceeEeeeeeecCccceEeeccceeee
Confidence            33221  11000 000011122222221111100      111      123455666667666655   3445566677


Q ss_pred             EeeecCC------------------CceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCee------eEeeCCC-CCCCCC
Q 014154          156 SWNVCAS------------------GTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEK------IWTAKPP-PKNSLG  209 (430)
Q Consensus       156 ~~~~~~~------------------~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~-~~~~~~  209 (430)
                      +|++.-.                  .-|++..|+|. -+.++..+..|+|++.|++....      +++.... ......
T Consensus       189 LWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsff  268 (433)
T KOG1354|consen  189 LWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFF  268 (433)
T ss_pred             eccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhH
Confidence            7765422                  23777889994 57788889999999999984221      2211111 111111


Q ss_pred             CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCC------------Ce---EEEEecCCCCEEE
Q 014154          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRET------------PI---KAVAEEPDSFNIY  274 (430)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~i---~~~~~sp~~~~l~  274 (430)
                      ..-...|..+.|  +++|+++++- .--+|++||++....|+.+++-|..            .|   ..++|+-++.+++
T Consensus       269 seiIsSISDvKF--s~sGryilsR-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~  345 (433)
T KOG1354|consen  269 SEIISSISDVKF--SHSGRYILSR-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVM  345 (433)
T ss_pred             HHHhhhhhceEE--ccCCcEEEEe-ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEe
Confidence            111256888999  8999999873 3368999999876778888887742            22   4578999999999


Q ss_pred             EEeCCCcEEEEEccCC
Q 014154          275 IGNGSGDLASVDIRTG  290 (430)
Q Consensus       275 ~~~~d~~i~iwd~~~~  290 (430)
                      +|+..+..++|++..|
T Consensus       346 TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  346 TGSYNNVFRVFNLARG  361 (433)
T ss_pred             cccccceEEEecCCCC
Confidence            9999999999996654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.54  E-value=9e-13  Score=110.65  Aligned_cols=267  Identities=12%  Similarity=0.103  Sum_probs=170.2

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCc-----ccceeeccCCCCCC-----CCCCceEEEEEeecCcccccccC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQ-----PEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      +.++.|  ...|.+||+|..+|.|.++.-....     ....++.|.+ .|.     .-...|..+.|......      
T Consensus        28 is~vef--~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep-EFDYLkSleieEKinkIrw~~~~n~------   98 (433)
T KOG1354|consen   28 ISAVEF--DHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP-EFDYLKSLEIEEKINKIRWLDDGNL------   98 (433)
T ss_pred             eeeEEe--ecccceEeecCCCCeEEEeecccccccceeeeeeeeccCc-ccchhhhhhhhhhhhhceecCCCCc------
Confidence            445555  5578899999999999999653222     1122222211 111     12345666777776543      


Q ss_pred             ceEEEEccCCeeEEEEeeecCc-c---------------------ccCC-----CcceEEeeecCCCceEEEEEcCCCCE
Q 014154          124 RTLLTCTTKGKASMRSIEVTKV-S---------------------AESS-----CSTVKSWNVCASGTIAFSKVDISEKF  176 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~-~---------------------~~~~-----~~~i~~~~~~~~~~i~~~~~~~~~~~  176 (430)
                      ..++..+.+.++.+|.+..... .                     .+..     -.+.+++.-.|.-.|.++.++.+...
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence            3788889999999999864322 0                     0000     01234455556677999999999888


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc---eEE
Q 014154          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMS  253 (430)
Q Consensus       177 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~  253 (430)
                      ++++ .|=.|.+|+++-....+.+....+.... ....-|++..|+| ...+.++..+..|+|++.|++....+   ...
T Consensus       179 ~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmE-eLteVITsaEFhp-~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl  255 (433)
T KOG1354|consen  179 FLSA-DDLRINLWNLEIIDQSFNIVDIKPANME-ELTEVITSAEFHP-HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL  255 (433)
T ss_pred             Eeec-cceeeeeccccccCCceeEEEccccCHH-HHHHHHhhhccCH-hHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence            8865 4568999999754333332221111000 0013578888952 24567888899999999999942210   011


Q ss_pred             Ee------------ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc-cCCeEEeeeeCCC-----------CCC---eEE
Q 014154          254 FD------------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI-RTGKLLGCFIGKC-----------SGS---IRS  306 (430)
Q Consensus       254 ~~------------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~-~~~~~~~~~~~~~-----------~~~---v~~  306 (430)
                      +.            .--..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|.           ...   -..
T Consensus       256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe  334 (433)
T KOG1354|consen  256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE  334 (433)
T ss_pred             hccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence            11            11246788999999999987542 67999999 4566777776651           112   245


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      ++|+.++.+++||+..+.+++|++..|
T Consensus       335 c~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  335 CSWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             EEEcCCcceEecccccceEEEecCCCC
Confidence            789999999999999999999996544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=1.3e-12  Score=124.54  Aligned_cols=190  Identities=16%  Similarity=0.119  Sum_probs=143.8

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      ..++..+....+.+|+......+....-....++     ....-+-++++.-++++|+.-+.|.+|+....+.-..+.+|
T Consensus       100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l-----~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GH  174 (967)
T KOG0974|consen  100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTL-----YSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGH  174 (967)
T ss_pred             ceEEEEEcCceEEEEecccCceehhcCCCceEEE-----EeEEEEeccCcEEEEEeccccccEEEEeccccCCcceeccc
Confidence            4666677777777777543332111110111111     11222345667889999999999999998632222234444


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~  283 (430)
                               .+.|.++.+  +.+|.++++.+.|.++++|++.+.+......-+|.+.|..+.|.|+  .+++++.|.+.+
T Consensus       175 ---------eG~iF~i~~--s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcr  241 (967)
T KOG0974|consen  175 ---------EGSIFSIVT--SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCR  241 (967)
T ss_pred             ---------CCceEEEEE--ccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEE
Confidence                     377899999  8899999999999999999999977655567789999999999998  999999999999


Q ss_pred             EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      +|+. .+..+.++.+|....|..++..++...++|++.|+.+++|++..
T Consensus       242 vW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  242 VWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            9976 55666689998778899999999999999999999999999864

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=5.8e-12  Score=118.13  Aligned_cols=169  Identities=14%  Similarity=0.115  Sum_probs=109.1

Q ss_pred             EEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCc--EE
Q 014154          167 FSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQ--VR  240 (430)
Q Consensus       167 ~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~  240 (430)
                      ..+|+|+++.|+. .+.+|  .|++||+.+++.. .+..+.         ......+|  +|+++.|+.++. +|.  |+
T Consensus       252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~---------~~~~~~~~--spDG~~l~f~sd~~g~~~iy  319 (433)
T PRK04922        252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHF---------GIDTEPTW--APDGKSIYFTSDRGGRPQIY  319 (433)
T ss_pred             CceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCC---------CCccceEE--CCCCCEEEEEECCCCCceEE
Confidence            4578888887754 44444  5999999877643 232221         22355688  899998887664 444  66


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC---cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      ++|+.++.  ...+..+......++|+|+|++|+..+.++   .|.+||+.+++.. .+..  ........|+|||++|+
T Consensus       320 ~~dl~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~  394 (433)
T PRK04922        320 RVAASGGS--AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVL  394 (433)
T ss_pred             EEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEE
Confidence            67776644  333333334455789999999998765443   6999999888765 3332  22445678999999887


Q ss_pred             EEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          318 SCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       318 s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      ..+.+   +.|+++++.. .....  +..+ ...+..++|+|
T Consensus       395 ~~s~~~g~~~L~~~~~~g-~~~~~--l~~~-~g~~~~p~wsp  432 (433)
T PRK04922        395 YATREGGRGVLAAVSTDG-RVRQR--LVSA-DGEVREPAWSP  432 (433)
T ss_pred             EEEecCCceEEEEEECCC-CceEE--cccC-CCCCCCCccCC
Confidence            77653   4688888854 44444  2222 23356778876

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=7e-12  Score=117.06  Aligned_cols=195  Identities=11%  Similarity=0.039  Sum_probs=130.7

Q ss_pred             CCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE-eCC
Q 014154          161 ASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TND  236 (430)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d  236 (430)
                      +...+...+|+|+|+.|+..+.   +..|++|++.+++..... ...         ..+....|  +|||+.|+.. +.+
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~---------~~~~~~~~--SPDG~~La~~~~~~  264 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP---------RHNGAPAF--SPDGSKLAFALSKT  264 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC---------CCcCCeEE--CCCCCEEEEEEcCC
Confidence            3457889999999999987543   457999999877543221 111         22345688  8999988765 444


Q ss_pred             C--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154          237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       237 g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      |  .|++||+.++.  ...+..+...+....|+|||+.|+..+.+ +  .|+++|+.+++.. .+... ........|+|
T Consensus       265 g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~-~~~~~~~~~Sp  340 (429)
T PRK03629        265 GSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSS  340 (429)
T ss_pred             CCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecC-CCCccCEEECC
Confidence            4  58899998754  34444445577889999999988777654 3  4555577666543 33332 34556789999


Q ss_pred             CCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCc---eEecCCCC
Q 014154          312 TLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPM---LEIQNGND  376 (430)
Q Consensus       312 ~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~---i~~~~~~~  376 (430)
                      +|++|+..+.+   ..|++||+.+++... +  ...  .......|+|||++ ++++.++.   +.+++.+.
T Consensus       341 DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-L--t~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G  407 (429)
T PRK03629        341 DGKFMVMVSSNGGQQHIAKQDLATGGVQV-L--TDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG  407 (429)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCCeEE-e--CCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence            99998876543   358899998886543 2  211  12346889999998 66666654   55555543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=7.4e-12  Score=117.03  Aligned_cols=171  Identities=12%  Similarity=0.067  Sum_probs=105.9

Q ss_pred             EEEEEcCCCCEEEE-EeCCCeEEEE--ECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEE
Q 014154          166 AFSKVDISEKFSLF-GGKGVEVNVW--DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRL  241 (430)
Q Consensus       166 ~~~~~~~~~~~l~~-~~~d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~i  241 (430)
                      ...+|+|+++.|+. .+.++...+|  |+..+. ...+..+.         .......|  +|||+.|+..+. ++...+
T Consensus       243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~---------~~~~~~~w--SpDG~~l~f~s~~~g~~~I  310 (427)
T PRK02889        243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSS---------GIDTEPFF--SPDGRSIYFTSDRGGAPQI  310 (427)
T ss_pred             cceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCC---------CCCcCeEE--cCCCCEEEEEecCCCCcEE
Confidence            35688999988764 5667765555  444433 33332221         22455678  899998876654 456666


Q ss_pred             EEC--CCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC---cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154          242 YDT--SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (430)
Q Consensus       242 wd~--~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  316 (430)
                      |.+  .++.  ...+..+.......+|+|+|++|+..+.++   .|.+||+.+++... +..  ........|+|||++|
T Consensus       311 y~~~~~~g~--~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~~~~~~p~~spdg~~l  385 (427)
T PRK02889        311 YRMPASGGA--AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD--TTRDESPSFAPNGRYI  385 (427)
T ss_pred             EEEECCCCc--eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC--CCCccCceECCCCCEE
Confidence            654  4433  233332333445678999999998777554   69999998887543 332  2234678999999988


Q ss_pred             EEEeCCC---cEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154          317 ASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       317 ~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      +.++.++   .+++.++ ++.....+  ..+ ...+...+|+|-
T Consensus       386 ~~~~~~~g~~~l~~~~~-~g~~~~~l--~~~-~g~~~~p~wsp~  425 (427)
T PRK02889        386 LYATQQGGRSVLAAVSS-DGRIKQRL--SVQ-GGDVREPSWGPF  425 (427)
T ss_pred             EEEEecCCCEEEEEEEC-CCCceEEe--ecC-CCCCCCCccCCC
Confidence            8877554   3666666 45555543  223 233567788873

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.52  E-value=5.8e-12  Score=105.29  Aligned_cols=303  Identities=14%  Similarity=0.114  Sum_probs=182.7

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCce-eEEeecCCeEEEecCCCCccccee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPL-LAVARKNGLTDILNPLNGDLRVAI   91 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~-l~~g~~dg~i~iwd~~~~~~~~~~   91 (430)
                      |..+-++...+-.+.|-|..+-     ++.+-|.- -+.+.-+-++    .|.-+ |.....++.|.+|++...+-...+
T Consensus        18 p~g~yiAs~~~yrlviRd~~tl-----q~~qlf~c-ldki~yieW~----ads~~ilC~~yk~~~vqvwsl~Qpew~ckI   87 (447)
T KOG4497|consen   18 PCGNYIASLSRYRLVIRDSETL-----QLHQLFLC-LDKIVYIEWK----ADSCHILCVAYKDPKVQVWSLVQPEWYCKI   87 (447)
T ss_pred             CCCCeeeeeeeeEEEEeccchh-----hHHHHHHH-HHHhhheeee----ccceeeeeeeeccceEEEEEeecceeEEEe
Confidence            4555555555567777777764     33333322 1222222222    23333 555788999999999766644444


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC-CCceEEEEE
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKV  170 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~  170 (430)
                      ..        +..++..+.|.+...       ..+.+...+-.+.||++.....           +.+.+ ...+..++|
T Consensus        88 de--------g~agls~~~WSPdgr-------hiL~tseF~lriTVWSL~t~~~-----------~~~~~pK~~~kg~~f  141 (447)
T KOG4497|consen   88 DE--------GQAGLSSISWSPDGR-------HILLTSEFDLRITVWSLNTQKG-----------YLLPHPKTNVKGYAF  141 (447)
T ss_pred             cc--------CCCcceeeeECCCcc-------eEeeeecceeEEEEEEecccee-----------EEecccccCceeEEE
Confidence            32        345666666655543       3455556667899999875431           11111 233456666


Q ss_pred             cCCCCEEEEEeCC------------------------------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCc
Q 014154          171 DISEKFSLFGGKG------------------------------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT  214 (430)
Q Consensus       171 ~~~~~~l~~~~~d------------------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  214 (430)
                      +|+|++.+.++.-                                    +.+.+||---.-.+..+..          .-
T Consensus       142 ~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~----------~l  211 (447)
T KOG4497|consen  142 HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER----------GL  211 (447)
T ss_pred             CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee----------cc
Confidence            6666666554421                                    1122333211111111111          02


Q ss_pred             ceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC----------------------------------------------
Q 014154          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----------------------------------------------  248 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------------------------------------------  248 (430)
                      .+..++|  +|.+++|++|+.|+.+++.+--+-+                                              
T Consensus       212 G~k~v~w--sP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~  289 (447)
T KOG4497|consen  212 GLKFVEW--SPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIW  289 (447)
T ss_pred             ceeEEEe--ccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcc
Confidence            3677788  8999999999999999875422110                                              


Q ss_pred             -----------cc--eEEEe------ecCCCeEEEEecCCCCEEEEEeCC--CcEEEEEccCCeEEeeeeCCCCCCeEEE
Q 014154          249 -----------RP--VMSFD------FRETPIKAVAEEPDSFNIYIGNGS--GDLASVDIRTGKLLGCFIGKCSGSIRSI  307 (430)
Q Consensus       249 -----------~~--~~~~~------~~~~~i~~~~~sp~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~i  307 (430)
                                 .+  +..++      .....+.-++|++|..++++-...  +.+.+||++..++...+..  ..+|...
T Consensus       290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~piraf  367 (447)
T KOG4497|consen  290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHPIRAF  367 (447)
T ss_pred             ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh--ccceeEE
Confidence                       00  00111      112345678999999999887543  6799999998887666655  4689999


Q ss_pred             EecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCce
Q 014154          308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPML  369 (430)
Q Consensus       308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i  369 (430)
                      .|+|....|+.+.....+++|.......+..   ++. +-.|..+.|.-+|.. +..+.|...
T Consensus       368 ~WdP~~prL~vctg~srLY~W~psg~~~V~v---P~~-GF~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  368 EWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV---PKK-GFNIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             EeCCCCceEEEEcCCceEEEEcCCCceEEec---CCC-CceeeeEEecCCCcEEEEEcCCceE
Confidence            9999999888888788899999875444443   222 345789999999988 555555443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=8.8e-12  Score=116.51  Aligned_cols=185  Identities=15%  Similarity=0.036  Sum_probs=122.6

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeC
Q 014154          160 CASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTN  235 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~  235 (430)
                      .+...+.+.+|+|+++.|+..+.+   ..|++||+.+++....... .         ..+...+|  +|+++.|+ +.+.
T Consensus       193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~---------g~~~~~~~--SPDG~~la~~~~~  260 (427)
T PRK02889        193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-K---------GSNSAPAW--SPDGRTLAVALSR  260 (427)
T ss_pred             cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-C---------CCccceEE--CCCCCEEEEEEcc
Confidence            345678899999999999887643   3599999988765432211 1         23456788  89998876 4567


Q ss_pred             CCcEEEEE--CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CCcEEEEE--ccCCeEEeeeeCCCCCCeEEEEec
Q 014154          236 DHQVRLYD--TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVD--IRTGKLLGCFIGKCSGSIRSIARH  310 (430)
Q Consensus       236 dg~i~iwd--~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd--~~~~~~~~~~~~~~~~~v~~i~~~  310 (430)
                      ++...||.  +..+.  ...+..+........|+|||+.|+..+. ++...+|.  +.+++.. .+... ........|+
T Consensus       261 ~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~-g~~~~~~~~S  336 (427)
T PRK02889        261 DGNSQIYTVNADGSG--LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT-GSYNTSPRIS  336 (427)
T ss_pred             CCCceEEEEECCCCC--cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC-CCCcCceEEC
Confidence            77766665  44332  4555555555677899999998876654 45556664  4444432 22222 2334567899


Q ss_pred             CCCCeEEEEeCCC---cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC
Q 014154          311 PTLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD  365 (430)
Q Consensus       311 ~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~  365 (430)
                      |+|++|+..+.++   .|++||+.+++....  ..+.   ....+.|+|||+. ++++.
T Consensus       337 pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l--t~~~---~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        337 PDGKLLAYISRVGGAFKLYVQDLATGQVTAL--TDTT---RDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             CCCCEEEEEEccCCcEEEEEEECCCCCeEEc--cCCC---CccCceECCCCCEEEEEEe
Confidence            9999998777654   699999988875432  2221   2367899999998 44443

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.5e-11  Score=114.03  Aligned_cols=170  Identities=12%  Similarity=0.053  Sum_probs=109.7

Q ss_pred             eEEEEEcCCCCEEE-EEeCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CC--c
Q 014154          165 IAFSKVDISEKFSL-FGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--Q  238 (430)
Q Consensus       165 i~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~  238 (430)
                      +...+|+|+++.|+ +.+.++  .|++||+.++... .+..+.         .......|  +|+++.|+..+. +|  .
T Consensus       248 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~---------~~~~~~~~--spDG~~i~f~s~~~g~~~  315 (435)
T PRK05137        248 TFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSP---------AIDTSPSY--SPDGSQIVFESDRSGSPQ  315 (435)
T ss_pred             ccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCC---------CccCceeE--cCCCCEEEEEECCCCCCe
Confidence            34567889998775 444444  4788898876543 233221         23456788  899998887764 33  6


Q ss_pred             EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCe
Q 014154          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (430)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  315 (430)
                      |+++|+..+.  ...+..+...+....|+|+|++|+....+   ..|.+||+..+.. ..+..  ...+..+.|+|||++
T Consensus       316 Iy~~d~~g~~--~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~  390 (435)
T PRK05137        316 LYVMNADGSN--PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRV  390 (435)
T ss_pred             EEEEECCCCC--eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCE
Confidence            8888887643  34444445566778999999999877643   3688899865543 33332  234678899999998


Q ss_pred             EEEEeCC------CcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          316 IASCGLD------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       316 l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      |+..+.+      ..|+++|+..+.. ..+  ..  ...+...+|+|
T Consensus       391 i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l--~~--~~~~~~p~Wsp  432 (435)
T PRK05137        391 IMFFRQTPGSGGAPKLYTVDLTGRNE-REV--PT--PGDASDPAWSP  432 (435)
T ss_pred             EEEEEccCCCCCcceEEEEECCCCce-EEc--cC--CCCccCcccCC
Confidence            8766543      2588888876554 332  22  12246677876

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3.5e-11  Score=113.01  Aligned_cols=196  Identities=12%  Similarity=0.032  Sum_probs=132.4

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeC
Q 014154          160 CASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTN  235 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~  235 (430)
                      .+...+...+|+|+++.|+..+.   +..|++||+.+++... +....         ..+...+|  +|+|+.|+ +.+.
T Consensus       199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~---------g~~~~~~~--SPDG~~la~~~~~  266 (435)
T PRK05137        199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP---------GMTFAPRF--SPDGRKVVMSLSQ  266 (435)
T ss_pred             cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC---------CcccCcEE--CCCCCEEEEEEec
Confidence            44567899999999999988764   4689999998876532 22221         33556788  89998765 4555


Q ss_pred             CCc--EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-C--CcEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154          236 DHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S--GDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (430)
Q Consensus       236 dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~  310 (430)
                      ++.  |++||+.++.  ...+..+........|+|||+.|+..+. +  ..|++||+..++.. .+..+ ...+....|+
T Consensus       267 ~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~~~~~~~S  342 (435)
T PRK05137        267 GGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGRYSTPVWS  342 (435)
T ss_pred             CCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCcccCeEEC
Confidence            554  7777888754  4556656666778999999998887764 3  36888898766553 33333 4456778999


Q ss_pred             CCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC-C-----CceEecCCCC
Q 014154          311 PTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD-A-----PMLEIQNGND  376 (430)
Q Consensus       311 ~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~-d-----~~i~~~~~~~  376 (430)
                      |+|++|+..+.+   ..|.+||+.++.. ..+ ..+.   .+..+.|+|||+. ++.+. .     ..+.+++...
T Consensus       343 pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~l-t~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        343 PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RIL-TSGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             CCCCEEEEEEcCCCceEEEEEECCCCce-Eec-cCCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            999998877643   3688899865543 332 1121   2568899999997 44333 2     2455555543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=3.3e-12  Score=108.05  Aligned_cols=192  Identities=13%  Similarity=0.089  Sum_probs=135.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVR  240 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~  240 (430)
                      +-.+..++|++.-..++++..|-.|++|+-.. .+...++...        ...|++++|.  |. +..|++|+. +-|.
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s--------QrnvtclawR--PlsaselavgCr-~gIc  165 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS--------QRNVTCLAWR--PLSASELAVGCR-AGIC  165 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh--------hcceeEEEec--cCCcceeeeeec-ceeE
Confidence            35678899999888889999999999999765 3333333321        1569999995  43 446666665 4588


Q ss_pred             EEECCCCCc-------------ceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCCCeEE
Q 014154          241 LYDTSAQRR-------------PVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (430)
Q Consensus       241 iwd~~~~~~-------------~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  306 (430)
                      +|.......             .+....+| .+|+++.|.+||..+++++ .|..|.|||..++..+-..... .+.++-
T Consensus       166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-lgg~sl  243 (445)
T KOG2139|consen  166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-LGGFSL  243 (445)
T ss_pred             EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-CCceee
Confidence            997653111             12223344 6899999999999999887 4578999999998876444333 578899


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECC-CCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEe
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEI  371 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~  371 (430)
                      +.||||+.+|+.+.-|+..++|+.. +.....-. + +  .+.|....|+|+|++  ++.+....++-
T Consensus       244 LkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-l-g--sgrvqtacWspcGsfLLf~~sgsp~lys  307 (445)
T KOG2139|consen  244 LKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-L-G--SGRVQTACWSPCGSFLLFACSGSPRLYS  307 (445)
T ss_pred             EEEcCCCCEEEEecccceeeeehhcccceeccee-c-c--CCceeeeeecCCCCEEEEEEcCCceEEE
Confidence            9999999999999999999999543 33333322 1 1  225788899999998  44444444433

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.7e-11  Score=114.96  Aligned_cols=194  Identities=13%  Similarity=0.075  Sum_probs=129.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCC
Q 014154          161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTND  236 (430)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~d  236 (430)
                      +...+...+|+|+++.|+..+.+   ..|++||+.+++.... ....         ....+.+|  +|+|+.|+ +.+.+
T Consensus       202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~---------g~~~~~~~--SpDG~~l~~~~s~~  269 (433)
T PRK04922        202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFR---------GINGAPSF--SPDGRRLALTLSRD  269 (433)
T ss_pred             CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCC---------CCccCceE--CCCCCEEEEEEeCC
Confidence            34578889999999999987743   4699999987765332 1111         22346688  89998775 44555


Q ss_pred             C--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CCc--EEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154          237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGD--LASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       237 g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      +  .|++||+.++.  ...+..+......++|+|||++|+..+. +|.  |+++|+.+++... +..+ ......++|+|
T Consensus       270 g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~~~~~~~Sp  345 (433)
T PRK04922        270 GNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNYNARASVSP  345 (433)
T ss_pred             CCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCCccCEEECC
Confidence            5  59999998754  4455555555678899999998887764 444  7777877766432 2222 33445789999


Q ss_pred             CCCeEEEEeCCC---cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC---CCceEecCCC
Q 014154          312 TLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD---APMLEIQNGN  375 (430)
Q Consensus       312 ~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~---d~~i~~~~~~  375 (430)
                      +|++|+..+.++   .|.+||+.+++.. .+ ..+.   ....+.|+|||++ ++.+.   .+.|.+++.+
T Consensus       346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L-t~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL-TPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CCCEEEEEECCCCceeEEEEECCCCCeE-EC-CCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            999988765443   6999999888765 32 1221   2356799999997 44433   2345555554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.47  E-value=1.9e-10  Score=106.39  Aligned_cols=306  Identities=12%  Similarity=0.102  Sum_probs=183.6

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ..++++++.+|.|..+|..++     +.+-.+........  ..    ..++..+++++.+|.|..+|..+|+.+.....
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG-----~~~W~~~~~~~~~~--~p----~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  133 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETG-----KRLWRVDLDERLSG--GV----GADGGLVFVGTEKGEVIALDAEDGKELWRAKL  133 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCC-----cEeeeecCCCCccc--ce----EEcCCEEEEEcCCCEEEEEECCCCcEeeeecc
Confidence            367889999999999999887     45433222221111  11    12345688888999999999999998766442


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE--Ec
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK--VD  171 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~--~~  171 (430)
                      -         ..+.+.....  .       +.++.+..++.+..++.....          .+|..........+.  -+
T Consensus       134 ~---------~~~~~~p~v~--~-------~~v~v~~~~g~l~a~d~~tG~----------~~W~~~~~~~~~~~~~~~s  185 (377)
T TIGR03300       134 S---------SEVLSPPLVA--N-------GLVVVRTNDGRLTALDAATGE----------RLWTYSRVTPALTLRGSAS  185 (377)
T ss_pred             C---------ceeecCCEEE--C-------CEEEEECCCCeEEEEEcCCCc----------eeeEEccCCCceeecCCCC
Confidence            1         1111111111  1       466667777777777754322          245543332221110  01


Q ss_pred             C--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC-CCCcCCcce-eEEEEeecCCCCEEEEEeCCCcEEEEECCCC
Q 014154          172 I--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWF-TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (430)
Q Consensus       172 ~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  247 (430)
                      |  .+..++.+..++.+..+|+++++.+++........ ........+ ....+    .+..+++++.+|.++.||..++
T Consensus       186 p~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~----~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       186 PVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV----DGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             CEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE----ECCEEEEEEcCCEEEEEECCCC
Confidence            1  23467788889999999999998887654221100 000000001 11112    3457778889999999999987


Q ss_pred             CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (430)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i  327 (430)
                      +. +.....  .......  ..+..+++++.+|.|..+|..+++.+................  .+..|++++.+|.|++
T Consensus       262 ~~-~W~~~~--~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~  334 (377)
T TIGR03300       262 RV-LWKRDA--SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHW  334 (377)
T ss_pred             cE-EEeecc--CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEE
Confidence            63 333331  1122222  245688888899999999999999877663220112222222  4568899999999999


Q ss_pred             EECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEec
Q 014154          328 WDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ  372 (430)
Q Consensus       328 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~  372 (430)
                      +|..+|+.+..+.+.+  .......++. +++++.++.||.|..|
T Consensus       335 ~d~~tG~~~~~~~~~~--~~~~~sp~~~-~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       335 LSREDGSFVARLKTDG--SGIASPPVVV-GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EECCCCCEEEEEEcCC--CccccCCEEE-CCEEEEEeCCceEEEe
Confidence            9999999998854322  1222333333 4567888889998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=3.9e-10  Score=101.05  Aligned_cols=302  Identities=14%  Similarity=0.128  Sum_probs=177.5

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEe-----ecC-----CeEEEecCC
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA-----RKN-----GLTDILNPL   83 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g-----~~d-----g~i~iwd~~   83 (430)
                      ..++++-..++.++|++...+     ..+.+....  .  ...+-+  +|-|.||.+-     ..+     -.+.+|++.
T Consensus        45 ~G~lfA~~~~~~v~i~~~~~~-----~~~lt~~~~--~--~~~L~f--SP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve  113 (566)
T KOG2315|consen   45 NGRLFAYSDNQVVKVFEIATL-----KVVLCVELK--K--TYDLLF--SPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE  113 (566)
T ss_pred             CCcEEEEEcCCeEEEEEccCC-----cEEEEeccc--e--eeeeee--cccccccccccccccccCCCCCCCceeeeeec
Confidence            367777777888888888875     233222211  2  344445  7778787762     122     347799998


Q ss_pred             CCcccceeec----cCCCCCCCCCCceE-----EEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc---------
Q 014154           84 NGDLRVAISN----AGDSGAQPEDDGIV-----GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV---------  145 (430)
Q Consensus        84 ~~~~~~~~~~----~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~---------  145 (430)
                      ++.....+..    -|...|+..+.-..     .+.++......      ....-.....+..+.+.-.+.         
T Consensus       114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~------~~~~kl~~~~i~~f~lSpgp~~~~vAvyvP  187 (566)
T KOG2315|consen  114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFK------TIQHKLSVSGITMLSLSPGPEPPFVAVYVP  187 (566)
T ss_pred             cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCcc------ceeeeeeccceeeEEecCCCCCceEEEEcc
Confidence            8655544443    23334443222111     23344433211      111111111122222222211         


Q ss_pred             cccCCCcceEEeeecCC-------------CceEEEEEcCCCCEEE-EEeC-----------CCeEEEEECCCCeeeEee
Q 014154          146 SAESSCSTVKSWNVCAS-------------GTIAFSKVDISEKFSL-FGGK-----------GVEVNVWDLDKCEKIWTA  200 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~-------------~~i~~~~~~~~~~~l~-~~~~-----------d~~i~~~d~~~~~~~~~~  200 (430)
                      ...+.-..+++|.....             ..-..+.|++-+.-|+ .++.           +.++++++++.......+
T Consensus       188 e~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L  267 (566)
T KOG2315|consen  188 EKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL  267 (566)
T ss_pred             CCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence            23334456677765411             1123356666554332 2221           335777777633333333


Q ss_pred             CCCCCCCCCCcCCcceeEEEEeecCCCCEEEE--EeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (430)
                      ..          .++|.++.|  ++++..+++  |-.-..+.|||++. . ++.  ...+++-.++-|+|.|++|+.++-
T Consensus       268 ~k----------~GPVhdv~W--~~s~~EF~VvyGfMPAkvtifnlr~-~-~v~--df~egpRN~~~fnp~g~ii~lAGF  331 (566)
T KOG2315|consen  268 LK----------EGPVHDVTW--SPSGREFAVVYGFMPAKVTIFNLRG-K-PVF--DFPEGPRNTAFFNPHGNIILLAGF  331 (566)
T ss_pred             CC----------CCCceEEEE--CCCCCEEEEEEecccceEEEEcCCC-C-EeE--eCCCCCccceEECCCCCEEEEeec
Confidence            32          278999999  788865544  55677899999985 2 344  445678899999999999998875


Q ss_pred             C---CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC------CCcEEEEECCCCceeeEEEeeccccceE
Q 014154          279 S---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIKTRQLLSAVFLKQHLNEVV  349 (430)
Q Consensus       279 d---~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~v  349 (430)
                      +   |.|.+||+.+.+++..+...   .-+-+.|+|||++++|+..      |+.++||++. |.+++...+    ...+
T Consensus       332 GNL~G~mEvwDv~n~K~i~~~~a~---~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~~f----~sEL  403 (566)
T KOG2315|consen  332 GNLPGDMEVWDVPNRKLIAKFKAA---NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEKMF----KSEL  403 (566)
T ss_pred             CCCCCceEEEeccchhhccccccC---CceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehhhh----hHhH
Confidence            5   78999999999998888764   3466799999999999863      6789999984 666654222    2124


Q ss_pred             Eeeeccc
Q 014154          350 FDSAFAD  356 (430)
Q Consensus       350 ~~~~~s~  356 (430)
                      +.+.|-|
T Consensus       404 ~qv~W~P  410 (566)
T KOG2315|consen  404 LQVEWRP  410 (566)
T ss_pred             hheeeee
Confidence            5666654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=2.7e-11  Score=108.56  Aligned_cols=274  Identities=15%  Similarity=0.108  Sum_probs=174.0

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC--cceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS--NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      -.++||..--.|++||+...       ...|.-|...  |.+.-++-|.+    .++.=..|.+|.+..- -|.. ..+.
T Consensus        65 Y~lAtG~YKP~ikvydlanL-------SLKFERhlDae~V~feiLsDD~S----K~v~L~~DR~IefHak-~G~h-y~~R  131 (703)
T KOG2321|consen   65 YLLATGTYKPQIKVYDLANL-------SLKFERHLDAEVVDFEILSDDYS----KSVFLQNDRTIEFHAK-YGRH-YRTR  131 (703)
T ss_pred             EEEEecccCCceEEEEcccc-------eeeeeecccccceeEEEeccchh----hheEeecCceeeehhh-cCee-eeee
Confidence            45778888889999999873       3334445433  33333333333    2444445666665542 1210 0000


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      .       |..+.  .+.+....        .-++.++.+..+.-.++..+.        .+.-+. ...+.++++.+++
T Consensus       132 I-------P~~GR--Dm~y~~~s--------cDly~~gsg~evYRlNLEqGr--------fL~P~~-~~~~~lN~v~in~  185 (703)
T KOG2321|consen  132 I-------PKFGR--DMKYHKPS--------CDLYLVGSGSEVYRLNLEQGR--------FLNPFE-TDSGELNVVSINE  185 (703)
T ss_pred             c-------CcCCc--cccccCCC--------ccEEEeecCcceEEEEccccc--------cccccc-cccccceeeeecC
Confidence            0       00011  12222111        234444444444444444322        233333 2347899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCC--CCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPK--NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      ...+|++|+.+|.|-.||.++...+..+.....  ...+......|+++.|  +.+|-.+++|+..|.|.|||++..+..
T Consensus       186 ~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F--~d~gL~~aVGts~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  186 EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKF--RDDGLHVAVGTSTGSVLIYDLRASKPL  263 (703)
T ss_pred             ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEe--cCCceeEEeeccCCcEEEEEcccCCce
Confidence            999999999999999999987666555443221  1111122345999999  677999999999999999999985543


Q ss_pred             eEEEeecCCCeEEEEecCC--CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154          251 VMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW  328 (430)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iw  328 (430)
                      +..-.+...+|..+.|.+.  ++.+++. ....++|||-.+|+....+..  ...++.+++-|++-+++++-.++.+..|
T Consensus       264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp--t~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  264 LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP--TSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc--cCCcCceeeecCCceEEEecCCCcceeE
Confidence            3333334568999999765  3445443 567899999999999888876  5679999999999999999888877777


Q ss_pred             ECCC
Q 014154          329 DIKT  332 (430)
Q Consensus       329 d~~~  332 (430)
                      -+..
T Consensus       341 yiP~  344 (703)
T KOG2321|consen  341 YIPS  344 (703)
T ss_pred             Eccc
Confidence            6654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.45  E-value=9.7e-12  Score=111.88  Aligned_cols=192  Identities=14%  Similarity=0.125  Sum_probs=149.2

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee------------------cCCCCEEEEE
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS------------------IDDHRKFVAG  233 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~~~l~s~  233 (430)
                      |...++|....||.+++|+...++...++.....-.      +..++..|..                  +.+...++-|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s------~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg   76 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLS------GTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG   76 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhcc------CcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence            456788999999999999998887766665432111      1222222210                  2244578889


Q ss_pred             eCCCcEEEEECCCCCcceEEEe--ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154          234 TNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      ...|.|.+|+...++. ...+.  .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+... ...+.+++.+|
T Consensus        77 t~~g~v~~ys~~~g~i-t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~-~~~~~sl~is~  154 (541)
T KOG4547|consen   77 TPQGSVLLYSVAGGEI-TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ-KPLVSSLCISP  154 (541)
T ss_pred             cCCccEEEEEecCCeE-EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC-CCccceEEEcC
Confidence            9999999999998763 44443  58899999999999999999999999999999999999999987 78899999999


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc-----ccc--cccCCCCceEecCCCC
Q 014154          312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK-----EVA--NAAADAPMLEIQNGND  376 (430)
Q Consensus       312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----g~~--~~~~~d~~i~~~~~~~  376 (430)
                      |+..|++++  +.|++||+++++.+..  +.|| ...|..++|-.+     |.+  .+...+..+.+|-...
T Consensus       155 D~~~l~~as--~~ik~~~~~~kevv~~--ftgh-~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTAS--RQIKVLDIETKEVVIT--FTGH-GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEecc--ceEEEEEccCceEEEE--ecCC-CcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999987  5799999999999988  6788 666799999887     666  3344556666675544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.43  E-value=7.2e-09  Score=94.17  Aligned_cols=282  Identities=16%  Similarity=0.130  Sum_probs=165.3

Q ss_pred             CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec----CCeEEEecCCCC-cccceeeccCCCC
Q 014154           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK----NGLTDILNPLNG-DLRVAISNAGDSG   98 (430)
Q Consensus        24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~----dg~i~iwd~~~~-~~~~~~~~~~~~~   98 (430)
                      +.|.+|++... .+....+........   ...+.+  +|++++|.+...    +|.|..|.+... ..+..+.....  
T Consensus        13 ~gI~~~~~d~~-~g~l~~~~~~~~~~~---Ps~l~~--~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--   84 (345)
T PF10282_consen   13 GGIYVFRFDEE-TGTLTLVQTVAEGEN---PSWLAV--SPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--   84 (345)
T ss_dssp             TEEEEEEEETT-TTEEEEEEEEEESSS---ECCEEE---TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--
T ss_pred             CcEEEEEEcCC-CCCceEeeeecCCCC---CceEEE--EeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--
Confidence            78999999443 222333333322222   222334  677888888765    578999988754 22222221100  


Q ss_pred             CCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee---------cCCCceEEEE
Q 014154           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV---------CASGTIAFSK  169 (430)
Q Consensus        99 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~---------~~~~~i~~~~  169 (430)
                         .......+.+.+...       ..+++...+|.+.++.+.....    ......++..         .......++.
T Consensus        85 ---~g~~p~~i~~~~~g~-------~l~vany~~g~v~v~~l~~~g~----l~~~~~~~~~~g~g~~~~rq~~~h~H~v~  150 (345)
T PF10282_consen   85 ---GGSSPCHIAVDPDGR-------FLYVANYGGGSVSVFPLDDDGS----LGEVVQTVRHEGSGPNPDRQEGPHPHQVV  150 (345)
T ss_dssp             ---SSSCEEEEEECTTSS-------EEEEEETTTTEEEEEEECTTSE----EEEEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred             ---CCCCcEEEEEecCCC-------EEEEEEccCCeEEEEEccCCcc----cceeeeecccCCCCCcccccccccceeEE
Confidence               112333455444333       3445556788999998864311    0011112211         1235688999


Q ss_pred             EcCCCCEEEEEeC-CCeEEEEECCCCe--ee--EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEE
Q 014154          170 VDISEKFSLFGGK-GVEVNVWDLDKCE--KI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYD  243 (430)
Q Consensus       170 ~~~~~~~l~~~~~-d~~i~~~d~~~~~--~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd  243 (430)
                      ++|+++++++... ...|++|++....  ..  ..+....        ....+.++|  +|+++++++.. .++.|.+++
T Consensus       151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~--------G~GPRh~~f--~pdg~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP--------GSGPRHLAF--SPDGKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST--------TSSEEEEEE---TTSSEEEEEETTTTEEEEEE
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc--------CCCCcEEEE--cCCcCEEEEecCCCCcEEEEe
Confidence            9999999887643 3479999997654  21  1221111        145788999  88998776654 577899999


Q ss_pred             CC--CCCc-ceEEEeec------CCCeEEEEecCCCCEEEEEe-CCCcEEEEEcc--CCe--EEeeeeCCCCCCeEEEEe
Q 014154          244 TS--AQRR-PVMSFDFR------ETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR--TGK--LLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       244 ~~--~~~~-~~~~~~~~------~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~--~~~--~~~~~~~~~~~~v~~i~~  309 (430)
                      +.  .+.. .+..+...      ......|+++|||++|+++. ..+.|.+|++.  +++  .+..+... ....+.+.+
T Consensus       221 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-G~~Pr~~~~  299 (345)
T PF10282_consen  221 YDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-GKFPRHFAF  299 (345)
T ss_dssp             EETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-SSSEEEEEE
T ss_pred             ecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-CCCccEEEE
Confidence            88  3211 12222211      12577899999999998877 45789999983  343  34444433 445899999


Q ss_pred             cCCCCeEEEEe-CCCcEEEEEC--CCCceeeE
Q 014154          310 HPTLPIIASCG-LDSYLRFWDI--KTRQLLSA  338 (430)
Q Consensus       310 ~~~~~~l~s~~-~dg~i~iwd~--~~~~~~~~  338 (430)
                      +|+|++|+++. .++.|.+|++  .+|.+...
T Consensus       300 s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  300 SPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence            99999998887 5578999876  56666554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.43  E-value=1e-11  Score=111.69  Aligned_cols=212  Identities=10%  Similarity=0.114  Sum_probs=153.5

Q ss_pred             CCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (430)
Q Consensus        63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~  142 (430)
                      |-+.|+|....||.++||+..+++....|..            +.                    ..+..+....|.+..
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p------------~~--------------------~~s~t~~~~~w~L~~   50 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAP------------IA--------------------SLSGTCTYTKWGLSA   50 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeecc------------ch--------------------hccCcceeEEEEEEe
Confidence            4467899999999999999998887666542            11                    111222333444322


Q ss_pred             cCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154          143 TKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (430)
Q Consensus       143 ~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (430)
                      ...       +.+....   ...  -..+.+...++-|...|.|.+|++..++..+.+....       |...|.++.+ 
T Consensus        51 ~~s-------~~k~~~~---~~~--~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~-------h~~~v~~~~~-  110 (541)
T KOG4547|consen   51 DYS-------PMKWLSL---EKA--KKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDK-------HYGNVNEILD-  110 (541)
T ss_pred             ccc-------hHHHHhH---HHH--hhccCCceEEEeecCCccEEEEEecCCeEEEEEecCC-------CCCcceeeec-
Confidence            110       1111000   000  1112355677889999999999999999888776432       3477888888 


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCC
Q 014154          223 SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG  302 (430)
Q Consensus       223 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  302 (430)
                       +.+-..|.+++.|+.+..|+..... .++.+......+.+++++||+..+++++  +.|.+||+.+++.+..|.+| .+
T Consensus       111 -~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh-~s  185 (541)
T KOG4547|consen  111 -AQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGH-GS  185 (541)
T ss_pred             -ccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCC-Cc
Confidence             6777899999999999999999854 5778888888899999999999998875  68999999999999999999 99


Q ss_pred             CeEEEEecCC-----CCeEEE-EeCCCcEEEEECC
Q 014154          303 SIRSIARHPT-----LPIIAS-CGLDSYLRFWDIK  331 (430)
Q Consensus       303 ~v~~i~~~~~-----~~~l~s-~~~dg~i~iwd~~  331 (430)
                      +|+++.|--+     |.++++ ...+..+.+|-+.
T Consensus       186 ~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  186 PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             ceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            9999999876     555544 4455567777654

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.43  E-value=3.7e-11  Score=99.03  Aligned_cols=232  Identities=13%  Similarity=0.114  Sum_probs=146.8

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EeeCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKP  202 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~  202 (430)
                      .++-+...|.+.++...+...  ...-..+..-.+. .....++.|++.+..++++-.+|.+.+-+.......  ...+.
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~s--s~~L~~ls~~ki~-~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~  163 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDES--SVHLRGLSSKKIS-VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV  163 (339)
T ss_pred             eeeeccccceEEEEeecccee--eeeecccchhhhh-heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc
Confidence            445566677777777654432  0000000000000 013457788999999999999999986665443332  24555


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE-EEeecCCCeEEEEecC-CCCEEEEEeCCC
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEP-DSFNIYIGNGSG  280 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~sp-~~~~l~~~~~d~  280 (430)
                      |.         ..+..+.|. ..+.+++.+|+.|+.+..||++.+...+. ..+-|...|.+|.-+| .+.+|++|+.|-
T Consensus       164 He---------~E~Wta~f~-~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe  233 (339)
T KOG0280|consen  164 HE---------FEAWTAKFS-DKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE  233 (339)
T ss_pred             cc---------eeeeeeecc-cCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc
Confidence            54         445666774 44568999999999999999995443233 3556888999998875 568999999999


Q ss_pred             cEEEEEcc-CCeEEeeeeCCCCCCeEEEEecCCC--CeEEEEeCCCcEEEEECCCCceee--EEE-eeccccceEEeeec
Q 014154          281 DLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTL--PIIASCGLDSYLRFWDIKTRQLLS--AVF-LKQHLNEVVFDSAF  354 (430)
Q Consensus       281 ~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~--~~~-~~~~~~~~v~~~~~  354 (430)
                      .|++||.| .++++..-..  .+.|+.+.++|.-  ..|+++..+| .+|-+.+......  .++ ...| ...+..-.|
T Consensus       234 ~i~~~DtRnm~kPl~~~~v--~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h-dSl~YG~DW  309 (339)
T KOG0280|consen  234 CIRVLDTRNMGKPLFKAKV--GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH-DSLCYGGDW  309 (339)
T ss_pred             ceeeeehhcccCccccCcc--ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc-cceeecccc
Confidence            99999999 5677655443  6789999999954  4566666665 7777776543331  111 2344 455566666


Q ss_pred             cccccc-cc-cCCCCceE-ecC
Q 014154          355 ADKEVA-NA-AADAPMLE-IQN  373 (430)
Q Consensus       355 s~~g~~-~~-~~~d~~i~-~~~  373 (430)
                      ...... ++ ...|+.++ +|-
T Consensus       310 d~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  310 DSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             ccccceeeeeeccccceeeeee
Confidence            433233 33 24566644 553

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.42  E-value=1e-10  Score=98.59  Aligned_cols=231  Identities=11%  Similarity=0.147  Sum_probs=145.3

Q ss_pred             ceeeecCCCceEEEEccC-CCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           16 RALTFDSLGLIKVIEARG-EHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      -+++.++|.++|||--.. +     +.-..+ .|..+..+.++++  .++...|++|-.+|++.-+.+...-....+.. 
T Consensus        38 gv~~~s~drtvrv~lkrds~-----q~wpsI-~~~mP~~~~~~~y--~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r-  108 (404)
T KOG1409|consen   38 GVISVSEDRTVRVWLKRDSG-----QYWPSI-YHYMPSPCSAMEY--VSESRRLYVGQDNGTVTEFALSEDFNKMTFLK-  108 (404)
T ss_pred             CeEEccccceeeeEEecccc-----ccCchh-hhhCCCCceEeee--eccceEEEEEEecceEEEEEhhhhhhhcchhh-
Confidence            478999999999995444 3     111111 1444555666766  66677899999999998887642211111100 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                         ....+...+..+. +....       ..+++++.|....-....++.        .+--|.+..  ...++.+.  -
T Consensus       109 ---~~~~h~~~v~~~i-f~~~~-------e~V~s~~~dk~~~~hc~e~~~--------~lg~Y~~~~--~~t~~~~d--~  165 (404)
T KOG1409|consen  109 ---DYLAHQARVSAIV-FSLTH-------EWVLSTGKDKQFAWHCTESGN--------RLGGYNFET--PASALQFD--A  165 (404)
T ss_pred             ---hhhhhhcceeeEE-ecCCc-------eeEEEeccccceEEEeeccCC--------cccceEeec--cCCCCcee--e
Confidence               0112333444333 33322       367777766554433333222        111111110  01111111  1


Q ss_pred             CEEEEEeCCCeEEEEEC--CCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154          175 KFSLFGGKGVEVNVWDL--DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  252 (430)
                      .+.+.|...|.|.+-.+  .....+.++.++.         ..+.+++|  .+...+|.+|..|..+.+||+...+-...
T Consensus       166 ~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~---------~~~~~l~W--d~~~~~LfSg~~d~~vi~wdigg~~g~~~  234 (404)
T KOG1409|consen  166 LYAFVGDHSGQITMLKLEQNGCQLITTFNGHT---------GEVTCLKW--DPGQRLLFSGASDHSVIMWDIGGRKGTAY  234 (404)
T ss_pred             EEEEecccccceEEEEEeecCCceEEEEcCcc---------cceEEEEE--cCCCcEEEeccccCceEEEeccCCcceee
Confidence            15556666666665544  3455666777765         77999999  78889999999999999999987665677


Q ss_pred             EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (430)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~  289 (430)
                      .+.+|...|..+...+--+.+++++.||.|.+||+..
T Consensus       235 el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  235 ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            8889999999999888888999999999999999853

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.39  E-value=2.5e-12  Score=128.70  Aligned_cols=184  Identities=14%  Similarity=0.171  Sum_probs=147.5

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      ...++++.||.+++|.-...        .+|..|+......++.+.|+.+|+.+..+..||.+.+|... .+.....+.|
T Consensus      2221 ~~Yltgs~dgsv~~~~w~~~--------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qch 2291 (2439)
T KOG1064|consen 2221 PYYLTGSQDGSVRMFEWGHG--------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCH 2291 (2439)
T ss_pred             ceEEecCCCceEEEEeccCC--------CeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccC
Confidence            57889999999999975432        37888888777889999999999999999999999999987 5556666665


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEEe---CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~  280 (430)
                      .         .......|.    +..+++++   .++.+.+||..-....-..-..|.+.++++++.|..++|++|+.+|
T Consensus      2292 n---------k~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2292 N---------KALSDFRFI----GSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred             C---------ccccceeee----ehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence            4         445667774    35666654   4678999997643322233378999999999999999999999999


Q ss_pred             cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE
Q 014154          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  340 (430)
                      .|++||++..++++.++.          ++ ...++++|+..|.++||++..-..++.+.
T Consensus      2359 ~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             cEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            999999999888766654          44 56789999999999999999888887753

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.39  E-value=7.3e-09  Score=91.95  Aligned_cols=281  Identities=16%  Similarity=0.075  Sum_probs=160.5

Q ss_pred             CCCCCcceeeecCC-----CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec----------C
Q 014154           10 PGCPPLRALTFDSL-----GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK----------N   74 (430)
Q Consensus        10 ~~~~~~~l~t~~~d-----g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~----------d   74 (430)
                      |..++.+++.-+..     |.|.+.|..+.     +++..+..-..+.. +   .  +|||+.|+++..          +
T Consensus         8 ~~~~~~~v~V~d~~~~~~~~~v~ViD~~~~-----~v~g~i~~G~~P~~-~---~--spDg~~lyva~~~~~R~~~G~~~   76 (352)
T TIGR02658         8 PASDARRVYVLDPGHFAATTQVYTIDGEAG-----RVLGMTDGGFLPNP-V---V--ASDGSFFAHASTVYSRIARGKRT   76 (352)
T ss_pred             CCCCCCEEEEECCcccccCceEEEEECCCC-----EEEEEEEccCCCce-e---E--CCCCCEEEEEeccccccccCCCC
Confidence            44455566666554     89999999997     77766664433322 1   3  678888877654          7


Q ss_pred             CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcce
Q 014154           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTV  154 (430)
Q Consensus        75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i  154 (430)
                      ..|.+||..+.+.+..+..-....+.. ......+.+.+...        .         +.|.+..        .+..+
T Consensus        77 d~V~v~D~~t~~~~~~i~~p~~p~~~~-~~~~~~~~ls~dgk--------~---------l~V~n~~--------p~~~V  130 (352)
T TIGR02658        77 DYVEVIDPQTHLPIADIELPEGPRFLV-GTYPWMTSLTPDNK--------T---------LLFYQFS--------PSPAV  130 (352)
T ss_pred             CEEEEEECccCcEEeEEccCCCchhhc-cCccceEEECCCCC--------E---------EEEecCC--------CCCEE
Confidence            899999999999888776310000000 00111122222211        2         2222211        12234


Q ss_pred             EEeeecCCCceEEEEEcCCCCEEEEE--------eCCCeEEEEECCCCeeeEee--CC--CCCCCCCCcCCcceeEEEEe
Q 014154          155 KSWNVCASGTIAFSKVDISEKFSLFG--------GKGVEVNVWDLDKCEKIWTA--KP--PPKNSLGIFTPTWFTSAAFL  222 (430)
Q Consensus       155 ~~~~~~~~~~i~~~~~~~~~~~l~~~--------~~d~~i~~~d~~~~~~~~~~--~~--~~~~~~~~~~~~~v~~~~~~  222 (430)
                      .+.++..+..+..+.. |++..++..        +.||......+.+.......  ..  ....... .  .+    .|.
T Consensus       131 ~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~-~--rP----~~~  202 (352)
T TIGR02658       131 GVVDLEGKAFVRMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI-N--HP----AYS  202 (352)
T ss_pred             EEEECCCCcEEEEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccc-c--CC----ceE
Confidence            4444444333333332 344443333        34444444333321111110  00  0000000 0  11    231


Q ss_pred             ecCCCCEEEEEeCCCcEEEEECCCCC----cceEEEee-------cCCCeEEEEecCCCCEEEEEe----------CCCc
Q 014154          223 SIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDF-------RETPIKAVAEEPDSFNIYIGN----------GSGD  281 (430)
Q Consensus       223 ~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-------~~~~i~~~~~sp~~~~l~~~~----------~d~~  281 (430)
                       ..++.++.+... |.|.+.|+....    .+...+..       ..+.+.-++++|+++.+++..          ..+.
T Consensus       203 -~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~  280 (352)
T TIGR02658       203 -NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF  280 (352)
T ss_pred             -cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence             337777777555 999999965422    12222211       123344599999999998853          2257


Q ss_pred             EEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC-eEEEEe-CCCcEEEEECCCCceeeEE
Q 014154          282 LASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       282 i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~  339 (430)
                      |.++|..+++.+..+..  ...+..++++||++ +|++.. .++.|.++|..+++.+..+
T Consensus       281 V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       281 LFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            99999999999999886  45889999999999 777665 6788999999999999986

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.1e-09  Score=98.25  Aligned_cols=197  Identities=15%  Similarity=0.182  Sum_probs=125.3

Q ss_pred             CCceEEEEEcCCC--CEEEE-----EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEE
Q 014154          162 SGTIAFSKVDISE--KFSLF-----GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAG  233 (430)
Q Consensus       162 ~~~i~~~~~~~~~--~~l~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~  233 (430)
                      ...|..+.++|.+  ..+++     .+.-..|++|.+.....-..+ ...    .....+. -.+.|  ++.|. +|+.+
T Consensus       165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-a~k----sFFkadk-vqm~W--N~~gt~LLvLa  236 (566)
T KOG2315|consen  165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-ANK----SFFKADK-VQMKW--NKLGTALLVLA  236 (566)
T ss_pred             ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-hhc----cccccce-eEEEe--ccCCceEEEEE
Confidence            3567788888852  34443     344557888887522111100 000    0101111 23345  44444 23222


Q ss_pred             --eCC---------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEE--EeCCCcEEEEEccCCeEEeeeeCCC
Q 014154          234 --TND---------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI--GNGSGDLASVDIRTGKLLGCFIGKC  300 (430)
Q Consensus       234 --~~d---------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~  300 (430)
                        .-|         .++++++++. ......+. ..++|.++.|+|+++-+++  |-.-..+.|||+ .+.++..+.   
T Consensus       237 stdVDktn~SYYGEq~Lyll~t~g-~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~---  310 (566)
T KOG2315|consen  237 STDVDKTNASYYGEQTLYLLATQG-ESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP---  310 (566)
T ss_pred             EEeecCCCccccccceEEEEEecC-ceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC---
Confidence              222         3688888873 33233333 3689999999999976655  445678999998 566666665   


Q ss_pred             CCCeEEEEecCCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC------CCceE
Q 014154          301 SGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD------APMLE  370 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~------d~~i~  370 (430)
                      +++=+++-|+|.|++|+.+|.+   |.|-|||+.+.+++..+.  .. .  .+-..|+|||.+ ++++.      |+.++
T Consensus       311 egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~--a~-~--tt~~eW~PdGe~flTATTaPRlrvdNg~K  385 (566)
T KOG2315|consen  311 EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK--AA-N--TTVFEWSPDGEYFLTATTAPRLRVDNGIK  385 (566)
T ss_pred             CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc--cC-C--ceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence            4567889999999999999865   789999999998888742  22 2  255799999998 54443      68889


Q ss_pred             ecCCCCC
Q 014154          371 IQNGNDT  377 (430)
Q Consensus       371 ~~~~~~~  377 (430)
                      ||++...
T Consensus       386 iwhytG~  392 (566)
T KOG2315|consen  386 IWHYTGS  392 (566)
T ss_pred             EEEecCc
Confidence            9987643

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.37  E-value=1.4e-10  Score=108.89  Aligned_cols=185  Identities=15%  Similarity=0.089  Sum_probs=126.3

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE-EeCC
Q 014154          161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND  236 (430)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d  236 (430)
                      +...+...+|+|++++|+.....   ..|++||+.+++...... ..         ..+.+++|  +|+++.|+. .+.+
T Consensus       188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~---------~~~~~~~~--spDg~~l~~~~~~~  255 (417)
T TIGR02800       188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FP---------GMNGAPAF--SPDGSKLAVSLSKD  255 (417)
T ss_pred             CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CC---------CCccceEE--CCCCCEEEEEECCC
Confidence            34567888999999999987654   479999998875543221 11         23456788  899987764 4444


Q ss_pred             C--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154          237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       237 g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      +  .|++||+.++.  ...+..+........|+|+++.|+..+.. +  .|+++|+.+++.. .+..+ ...+..+.|+|
T Consensus       256 ~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~-~~~~~~~~~sp  331 (417)
T TIGR02800       256 GNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR-GGYNASPSWSP  331 (417)
T ss_pred             CCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccCeEECC
Confidence            4  58889988754  34444454555678899999988766543 3  5888898877643 34333 45677889999


Q ss_pred             CCCeEEEEeCCC---cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC
Q 014154          312 TLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA  366 (430)
Q Consensus       312 ~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d  366 (430)
                      ++++|+.++.++   .|.+||+.++.....   ... . .....+|+|||+. ++...+
T Consensus       332 dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l---~~~-~-~~~~p~~spdg~~l~~~~~~  385 (417)
T TIGR02800       332 DGDLIAFVHREGGGFNIAVMDLDGGGERVL---TDT-G-LDESPSFAPNGRMILYATTR  385 (417)
T ss_pred             CCCEEEEEEccCCceEEEEEeCCCCCeEEc---cCC-C-CCCCceECCCCCEEEEEEeC
Confidence            999998888776   799999987654322   111 1 1346789999987 444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.34  E-value=2.8e-08  Score=90.36  Aligned_cols=243  Identities=17%  Similarity=0.129  Sum_probs=147.3

Q ss_pred             ceEEEEcc----CCeeEEEEeeecCccccCCCcceEEeeec--CCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCC-Ce
Q 014154          124 RTLLTCTT----KGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDK-CE  195 (430)
Q Consensus       124 ~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~-~~  195 (430)
                      ..+.+...    .+.+..+.+...       .+.+......  .+.....++++|++++|+++.. +|.|.++++.. +.
T Consensus        49 ~~LY~~~e~~~~~g~v~~~~i~~~-------~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~  121 (345)
T PF10282_consen   49 RRLYVVNEGSGDSGGVSSYRIDPD-------TGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS  121 (345)
T ss_dssp             SEEEEEETTSSTTTEEEEEEEETT-------TTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred             CEEEEEEccccCCCCEEEEEECCC-------cceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence            35555544    356666666532       1233333221  3455677999999999998874 89999999986 33


Q ss_pred             eeEee--CCCC--CCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcce---EEEee-cCCCeEEEEe
Q 014154          196 KIWTA--KPPP--KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPV---MSFDF-RETPIKAVAE  266 (430)
Q Consensus       196 ~~~~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~---~~~~~-~~~~i~~~~~  266 (430)
                      .....  ..+.  .............++.|  +|+++++++... ...|.+|++......+   ..+.. ....-+.++|
T Consensus       122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~--~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f  199 (345)
T PF10282_consen  122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVF--SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF  199 (345)
T ss_dssp             EEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred             cceeeeecccCCCCCcccccccccceeEEE--CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence            32221  1000  00000011245678888  899998877653 4579999998644212   22222 3456789999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEEcc--CCeE--EeeeeCC-----CCCCeEEEEecCCCCeEEEEe-CCCcEEEEECC--CC
Q 014154          267 EPDSFNIYIGN-GSGDLASVDIR--TGKL--LGCFIGK-----CSGSIRSIARHPTLPIIASCG-LDSYLRFWDIK--TR  333 (430)
Q Consensus       267 sp~~~~l~~~~-~d~~i~iwd~~--~~~~--~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~--~~  333 (430)
                      +|+++++++.. .++.|.+|++.  ++..  +..+...     .......|.++|||++|+++. .++.|.+|++.  ++
T Consensus       200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g  279 (345)
T PF10282_consen  200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG  279 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred             cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence            99999887766 46789999988  4432  2222211     012578899999999887765 56789999993  34


Q ss_pred             ceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154          334 QLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND  376 (430)
Q Consensus       334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~  376 (430)
                      .+...-..... ......++++|+|++  ++.-.++.|.+|+.+.
T Consensus       280 ~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  280 TLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             TEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            43322112221 223588999999998  4555788999998764

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=5.3e-10  Score=105.26  Aligned_cols=193  Identities=9%  Similarity=-0.006  Sum_probs=126.0

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE-EeCC
Q 014154          161 ASGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTND  236 (430)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~d  236 (430)
                      +...+....|+|+++.|+..+.+   ..|++||+.+++..... ...         ..+....|  +|+|+.|+. ...+
T Consensus       197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~-~~~---------g~~~~~~~--SpDG~~la~~~~~~  264 (430)
T PRK00178        197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT-NFE---------GLNGAPAW--SPDGSKLAFVLSKD  264 (430)
T ss_pred             CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc-CCC---------CCcCCeEE--CCCCCEEEEEEccC
Confidence            45678889999999999876644   36999999887654321 111         22345788  899988774 4445


Q ss_pred             C--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-C--CcEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154          237 H--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S--GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       237 g--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      +  .|++||+.++.  ...+..+........|+|||+.|+..+. +  ..|+++|+.+++.......  ........|+|
T Consensus       265 g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Sp  340 (430)
T PRK00178        265 GNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--GNYNARPRLSA  340 (430)
T ss_pred             CCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCCccceEECC
Confidence            5  58888998754  3445555556677899999998876654 3  3577888877765332221  22334578999


Q ss_pred             CCCeEEEEeCC-C--cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC-CCCc--eEecCC
Q 014154          312 TLPIIASCGLD-S--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAPM--LEIQNG  374 (430)
Q Consensus       312 ~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~-~d~~--i~~~~~  374 (430)
                      +|++|+..+.+ +  .|.+||+.+++... + ....   ......|+|||+. +..+ .++.  +.+++.
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-l-t~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-L-TDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCCCEEE-c-cCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            99998877643 3  58899998876533 2 1111   1235689999998 4443 3333  444444

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.34  E-value=1.3e-09  Score=102.39  Aligned_cols=155  Identities=16%  Similarity=0.131  Sum_probs=100.3

Q ss_pred             EEEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-C--cE
Q 014154          166 AFSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-H--QV  239 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i  239 (430)
                      .+++|+|+++.|+.. +.++  .|++||+.++.... +..+.         .......|  +|+++.|+..+.. +  .|
T Consensus       237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~---------~~~~~~~~--s~dg~~l~~~s~~~g~~~i  304 (417)
T TIGR02800       237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGP---------GIDTEPSW--SPDGKSIAFTSDRGGSPQI  304 (417)
T ss_pred             cceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCC---------CCCCCEEE--CCCCCEEEEEECCCCCceE
Confidence            346788888877643 3333  58889988765432 22221         22345578  7899988766543 3  57


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC---cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  316 (430)
                      +++|+.++.  ...+..+...+..+.|+|++++|+.++.++   .|.+||+.++... .+...  .......|+|++++|
T Consensus       305 y~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~--~~~~~p~~spdg~~l  379 (417)
T TIGR02800       305 YMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT--GLDESPSFAPNGRMI  379 (417)
T ss_pred             EEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC--CCCCCceECCCCCEE
Confidence            888887644  344554556677889999999999888775   7999999876543 33322  233556899999988


Q ss_pred             EEEeCCC---cEEEEECCCCceeeE
Q 014154          317 ASCGLDS---YLRFWDIKTRQLLSA  338 (430)
Q Consensus       317 ~s~~~dg---~i~iwd~~~~~~~~~  338 (430)
                      +..+.++   .+++.+.. +.....
T Consensus       380 ~~~~~~~~~~~l~~~~~~-g~~~~~  403 (417)
T TIGR02800       380 LYATTRGGRGVLGLVSTD-GRFRAR  403 (417)
T ss_pred             EEEEeCCCcEEEEEEECC-CceeeE
Confidence            8776654   35555543 444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.34  E-value=1e-09  Score=89.50  Aligned_cols=234  Identities=11%  Similarity=0.034  Sum_probs=150.8

Q ss_pred             eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  146 (430)
                      +||.|+.-|...+|...+.+....+-..       +...+.-..-+-...       ..+..++.++++++..+..... 
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~-------snn~v~~~~r~cd~~-------~~~~i~sndht~k~~~~~~~s~-  150 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDV-------SNNDVTLVKRYCDLK-------FPLNIASNDHTGKTMVVSGDSN-  150 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecc-------cccchhhhhhhcccc-------cceeeccCCcceeEEEEecCcc-
Confidence            6999999999999998766543332211       111221111111111       3566788889888888764421 


Q ss_pred             ccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEe-eCCCCCCCCCCcCCcceeEEEEeec
Q 014154          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWT-AKPPPKNSLGIFTPTWFTSAAFLSI  224 (430)
Q Consensus       147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~  224 (430)
                            .-.++. . .-.+.++++++++.++++.+....|..|.+.... .+.. .....        .+.-.+..|  +
T Consensus       151 ------~~~~h~-~-~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t--------~D~gF~~S~--s  212 (344)
T KOG4532|consen  151 ------KFAVHN-Q-NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT--------SDHGFYNSF--S  212 (344)
T ss_pred             ------cceeec-c-ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc--------CCCceeeee--c
Confidence                  111111 1 1237889999999999999999999999986532 2222 11111        133455677  7


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcceEE----EeecCCCeEEEEecCCC--CEEEEEeCCCcEEEEEccCCeEEeeee-
Q 014154          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMS----FDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIRTGKLLGCFI-  297 (430)
Q Consensus       225 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~i~~~~~sp~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~-  297 (430)
                      .....+|++..||++.|||++....|...    -..|.+.+..+.|++-|  .+|+..-.-+.+.+.|+|+++-.+.+. 
T Consensus       213 ~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i  292 (344)
T KOG4532|consen  213 ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI  292 (344)
T ss_pred             cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence            78889999999999999999986654433    23488999999999866  355555566889999999987654443 


Q ss_pred             ------CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154          298 ------GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       298 ------~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~  334 (430)
                            .|....|....|+.++.-+.+.+++. +.-|++.+..
T Consensus       293 ~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~srs  334 (344)
T KOG4532|consen  293 PDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSRS  334 (344)
T ss_pred             CccccccccccccccccccCCCcccccccchh-hheeeccccc
Confidence                  22223477777877776666665543 5566665443

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.32  E-value=1e-09  Score=90.69  Aligned_cols=277  Identities=13%  Similarity=0.153  Sum_probs=160.0

Q ss_pred             CCceEEEEccCCCCCcceeeeecC-CCCCCcceeeeeecCCCCCc-eeEEeecCCeEEEecCCCCcccceeeccCCCCCC
Q 014154           23 LGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ  100 (430)
Q Consensus        23 dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  100 (430)
                      -|.+.++++....  ... +.++. .....+..+-++.... +|. .|+-+...|.|.++..........+.++.....+
T Consensus        45 ~Gkl~Lys~~d~~--~~~-l~~~q~~dts~~~dm~w~~~~~-~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~  120 (339)
T KOG0280|consen   45 SGKLHLYSLEDMK--LSP-LDTLQCTDTSTEFDMLWRIRET-DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS  120 (339)
T ss_pred             ccceEEEeecccc--cCc-cceeeeecccccceeeeeeccC-CccceeeeccccceEEEEeeccceeeeeecccchhhhh
Confidence            3677888877641  111 11111 1122222333333112 334 4666788899999987654444444443221111


Q ss_pred             CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEE
Q 014154          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLF  179 (430)
Q Consensus       101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~  179 (430)
                      -.  ...++.+-...        ..+++....|.+.+-.....      .-..+..|. .|.-+++..+|+. +.+++++
T Consensus       121 ~~--~~lslD~~~~~--------~~i~vs~s~G~~~~v~~t~~------~le~vq~wk-~He~E~Wta~f~~~~pnlvyt  183 (339)
T KOG0280|consen  121 VV--EALSLDISTSG--------TKIFVSDSRGSISGVYETEM------VLEKVQTWK-VHEFEAWTAKFSDKEPNLVYT  183 (339)
T ss_pred             he--eeeEEEeeccC--------ceEEEEcCCCcEEEEeccee------eeeeccccc-ccceeeeeeecccCCCceEEe
Confidence            00  11223333322        25666667776663332211      112344565 5677788888876 5578999


Q ss_pred             EeCCCeEEEEECCC-CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC
Q 014154          180 GGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE  258 (430)
Q Consensus       180 ~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  258 (430)
                      |+.|+.+..||++. ++.++.  ...      .|...|.++.-. +|.+.+|++|+.|-.|++||.++..+|+..-.. .
T Consensus       184 GgDD~~l~~~D~R~p~~~i~~--n~k------vH~~GV~SI~ss-~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~  253 (339)
T KOG0280|consen  184 GGDDGSLSCWDIRIPKTFIWH--NSK------VHTSGVVSIYSS-PPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-G  253 (339)
T ss_pred             cCCCceEEEEEecCCcceeee--cce------eeecceEEEecC-CCCCceEEEeccccceeeeehhcccCccccCcc-c
Confidence            99999999999983 333333  111      122557777665 567889999999999999999987777665443 3


Q ss_pred             CCeEEEEecCCC--CEEEEEeCCCcEEEEEccCCe-----EEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEE-EEE
Q 014154          259 TPIKAVAEEPDS--FNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLR-FWD  329 (430)
Q Consensus       259 ~~i~~~~~sp~~--~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~-iwd  329 (430)
                      +.|..+.++|.-  ..|+++-..| .+|-+...+.     .......| .+-++.-.|.....+|+|++ .|+.++ +|-
T Consensus       254 GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~h-dSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  254 GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIH-DSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccc-cceeeccccccccceeeeeeccccceeeeee
Confidence            789999999854  2344443344 5666554332     23344555 66777778855556788876 555544 554


Q ss_pred             CCC
Q 014154          330 IKT  332 (430)
Q Consensus       330 ~~~  332 (430)
                      .-+
T Consensus       332 ~~t  334 (339)
T KOG0280|consen  332 HIT  334 (339)
T ss_pred             ecc
Confidence            333

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=3.4e-11  Score=120.87  Aligned_cols=186  Identities=15%  Similarity=0.185  Sum_probs=150.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ..+.++.-+|...+.++|+.||.+++|....++.+..+....        +..|+.+.|  +..|+.+..+..||.+.+|
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g--------~s~vtr~~f--~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG--------NSRVTRSRF--NHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC--------cchhhhhhh--cccCCceeeeccCCceeec
Confidence            567788889999999999999999999999888877665432        266888899  7889999999999999999


Q ss_pred             ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe---CCCcEEEEEccCCe---EEeeeeCCCCCCeEEEEecCCCCeE
Q 014154          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGK---LLGCFIGKCSGSIRSIARHPTLPII  316 (430)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~d~~i~iwd~~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l  316 (430)
                      ...  .++....+.|......+.|-.  ..+++++   .++.+.+||.--..   ++.  ..| .+.++++++-|..+.|
T Consensus      2279 q~~--pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H-~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2279 QAS--PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCH-DGGATVLAYAPKHQLL 2351 (2439)
T ss_pred             ccC--CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eec-CCCceEEEEcCcceEE
Confidence            988  346888888988888888864  5666654   46889999975322   233  555 8899999999999999


Q ss_pred             EEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154          317 ASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       317 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                      ++||.+|.|++||++..++++.+.  .          +.....++.++..|.++||+....
T Consensus      2352 isggr~G~v~l~D~rqrql~h~~~--~----------~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQLRHTFQ--A----------LDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             EecCCcCcEEEeehHHHHHHHHhh--h----------hhhhheeeccCcccceEEEEcccc
Confidence            999999999999999888887642  1          333334489999999999998774

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=2.9e-09  Score=100.32  Aligned_cols=169  Identities=14%  Similarity=0.098  Sum_probs=103.7

Q ss_pred             EEEEcCCCCEEEE-EeCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CC--cEE
Q 014154          167 FSKVDISEKFSLF-GGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QVR  240 (430)
Q Consensus       167 ~~~~~~~~~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~  240 (430)
                      ...|+|+++.|+. ...++  .|++||+.++.... +..+.         .......|  +|+++.|+..+. ++  .|+
T Consensus       247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~---------~~~~~~~~--spDg~~i~f~s~~~g~~~iy  314 (430)
T PRK00178        247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHP---------AIDTEPFW--GKDGRTLYFTSDRGGKPQIY  314 (430)
T ss_pred             CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCC---------CCcCCeEE--CCCCCEEEEEECCCCCceEE
Confidence            4678888887764 33444  58888998765432 22221         22345678  899988776654 33  577


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      ++|+.+++.  ..+...........|+|++++|+..+.+ +  .|.+||+.+++.. .+..  ........|+|+|++|+
T Consensus       315 ~~d~~~g~~--~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~--~~~~~~p~~spdg~~i~  389 (430)
T PRK00178        315 KVNVNGGRA--ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD--TSLDESPSVAPNGTMLI  389 (430)
T ss_pred             EEECCCCCE--EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC--CCCCCCceECCCCCEEE
Confidence            778876542  2332222334467899999999877643 2  5888999887653 2322  11223568999999887


Q ss_pred             EEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          318 SCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       318 s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      ..+.+   ..|+++++. +.....  +..+ ...+...+|+|
T Consensus       390 ~~~~~~g~~~l~~~~~~-g~~~~~--l~~~-~g~~~~p~ws~  427 (430)
T PRK00178        390 YATRQQGRGVLMLVSIN-GRVRLP--LPTA-QGEVREPSWSP  427 (430)
T ss_pred             EEEecCCceEEEEEECC-CCceEE--CcCC-CCCcCCCccCC
Confidence            77644   347777775 333333  2222 23356677776

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=7.5e-10  Score=103.95  Aligned_cols=193  Identities=11%  Similarity=0.037  Sum_probs=122.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE-EeCCC
Q 014154          162 SGTIAFSKVDISEKFSLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDH  237 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg  237 (430)
                      ...+....|+|+++.|+..+.+   ..|++||+.+++.... ....         ......+|  +|+++.|+. .+.++
T Consensus       217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~---------g~~~~~~w--SPDG~~La~~~~~~g  284 (448)
T PRK04792        217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFP---------GINGAPRF--SPDGKKLALVLSKDG  284 (448)
T ss_pred             CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCC---------CCcCCeeE--CCCCCEEEEEEeCCC
Confidence            4567789999999999876543   2589999987764322 1111         12335678  899997765 45566


Q ss_pred             c--EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CC--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       238 ~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      .  |+++|+.++.  ...+..+.......+|+||+++|+..+. ++  .|+++|+.+++.... ... ........|+|+
T Consensus       285 ~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~-g~~~~~~~~SpD  360 (448)
T PRK04792        285 QPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE-GEQNLGGSITPD  360 (448)
T ss_pred             CeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC-CCCCcCeeECCC
Confidence            4  7788887654  4455555556678899999998876653 33  477778877765432 211 223345789999


Q ss_pred             CCeEEEEeCC-C--cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cc-cCCCCc--eEecCCC
Q 014154          313 LPIIASCGLD-S--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NA-AADAPM--LEIQNGN  375 (430)
Q Consensus       313 ~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~-~~~d~~--i~~~~~~  375 (430)
                      |++|+..+.+ +  .|.++|+.+++... + ....   ......|+|||+. +. ...++.  +.+++.+
T Consensus       361 G~~l~~~~~~~g~~~I~~~dl~~g~~~~-l-t~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        361 GRSMIMVNRTNGKFNIARQDLETGAMQV-L-TSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCCCeEE-c-cCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            9988776543 3  46667888776533 2 1111   1235689999997 43 334444  4444443

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=2.6e-09  Score=100.32  Aligned_cols=169  Identities=13%  Similarity=0.104  Sum_probs=103.4

Q ss_pred             EEEEcCCCCEEEE-EeCCCe--EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CC--cEE
Q 014154          167 FSKVDISEKFSLF-GGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH--QVR  240 (430)
Q Consensus       167 ~~~~~~~~~~l~~-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~  240 (430)
                      ..+|+|+++.|+. ...++.  |+++|+.+++... +..+.         .......|  +|+++.|+..+. ++  .|.
T Consensus       266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~---------~~~~~p~w--SpDG~~I~f~s~~~g~~~Iy  333 (448)
T PRK04792        266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHR---------AIDTEPSW--HPDGKSLIFTSERGGKPQIY  333 (448)
T ss_pred             CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCC---------CCccceEE--CCCCCEEEEEECCCCCceEE
Confidence            4578888887765 455554  8888887765432 22221         23456678  899998776654 33  466


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      ++|+.+++.  ..+..........+|+|||++|+..+.+ +  .|.++|+.+++.. .+...  .......|+|+|++|+
T Consensus       334 ~~dl~~g~~--~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~spdG~~I~  408 (448)
T PRK04792        334 RVNLASGKV--SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAPNGTMVI  408 (448)
T ss_pred             EEECCCCCE--EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC--CCCCCceECCCCCEEE
Confidence            777776542  3332222334457899999998876553 3  4666788887653 23321  1223457999999877


Q ss_pred             EEeCC-C--cEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          318 SCGLD-S--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       318 s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      ..+.+ +  .+++++. +|.....+  ..+ ...+...+|+|
T Consensus       409 ~~~~~~g~~~l~~~~~-~G~~~~~l--~~~-~g~~~~p~Wsp  446 (448)
T PRK04792        409 YSTTYQGKQVLAAVSI-DGRFKARL--PAG-QGEVKSPAWSP  446 (448)
T ss_pred             EEEecCCceEEEEEEC-CCCceEEC--cCC-CCCcCCCccCC
Confidence            66543 3  3777786 45555553  233 23356778887

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.6e-08  Score=94.30  Aligned_cols=179  Identities=12%  Similarity=0.046  Sum_probs=110.5

Q ss_pred             CceEEEEEcCCCCEEEEEeC-CC----eEEEEECCCC---eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154          163 GTIAFSKVDISEKFSLFGGK-GV----EVNVWDLDKC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~-d~----~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  234 (430)
                      +.....+|+|+|+.|+..+. +|    .+..|++..+   ..........         ......+|  +|||+.|+..+
T Consensus       231 g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~---------~~~~~p~w--SPDG~~Laf~s  299 (428)
T PRK01029        231 GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAF---------GTQGNPSF--SPDGTRLVFVS  299 (428)
T ss_pred             CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCC---------CCcCCeEE--CCCCCEEEEEE
Confidence            34456899999998887653 22    2344666542   2111111110         22345688  89999877665


Q ss_pred             -CCCcEEEE--ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEeeeeCCCCCCeEEEE
Q 014154          235 -NDHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIGKCSGSIRSIA  308 (430)
Q Consensus       235 -~dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~v~~i~  308 (430)
                       .+|...+|  ++.........+..+...+....|+|||++|+..+.+   ..|.+||+.+++... +... ...+....
T Consensus       300 ~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~  377 (428)
T PRK01029        300 NKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPS  377 (428)
T ss_pred             CCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceE
Confidence             46655555  4432112234454455567789999999988876543   469999998887643 3332 34567899


Q ss_pred             ecCCCCeEEEEeC---CCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154          309 RHPTLPIIASCGL---DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       309 ~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      |+|||++|+..+.   ...|+++|+.+++.....  .+  ...+...+|+|-.
T Consensus       378 wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~--~g~~~~p~Ws~~~  426 (428)
T PRK01029        378 WAIDSLHLVYSAGNSNESELYLISLITKKTRKIV--IG--SGEKRFPSWGAFP  426 (428)
T ss_pred             ECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cC--CCcccCceecCCC
Confidence            9999998775433   356899999877655432  11  2224567777643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.27  E-value=1.7e-08  Score=89.01  Aligned_cols=144  Identities=15%  Similarity=0.134  Sum_probs=105.7

Q ss_pred             ecCCCceEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC
Q 014154          159 VCASGTIAFSKVDISEKFSLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (430)
Q Consensus       159 ~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg  237 (430)
                      +.+.+.|.-..+..+++-++.|..|| .+-+||.++++........          +.|.++..  +++|..++.+....
T Consensus       356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l----------g~I~av~v--s~dGK~~vvaNdr~  423 (668)
T COG4946         356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL----------GNIEAVKV--SPDGKKVVVANDRF  423 (668)
T ss_pred             cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc----------cceEEEEE--cCCCcEEEEEcCce
Confidence            45566677777877788899999999 8999999988755443332          56888898  89999999999999


Q ss_pred             cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC----cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  313 (430)
                      .|.+.|+.++.. ...-+...+-|+.+.|||++++||-+--+|    .|++||+..++....-..  .+.=.+-+|.|++
T Consensus       424 el~vididngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~d~  500 (668)
T COG4946         424 ELWVIDIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDPDG  500 (668)
T ss_pred             EEEEEEecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCCCC
Confidence            999999999763 333344567899999999999999887665    589999988776433322  2222334555555


Q ss_pred             CeEE
Q 014154          314 PIIA  317 (430)
Q Consensus       314 ~~l~  317 (430)
                      ++|.
T Consensus       501 ryLY  504 (668)
T COG4946         501 RYLY  504 (668)
T ss_pred             cEEE
Confidence            5443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.27  E-value=8.2e-10  Score=101.82  Aligned_cols=287  Identities=14%  Similarity=0.127  Sum_probs=188.1

Q ss_pred             CCCcccCCCCC--CCcceeeecCCCceEEEEccCCC-----CC-----cceeeeecCCCCCCcceeeeeecCCCCCceeE
Q 014154            2 PRTTTLECPGC--PPLRALTFDSLGLIKVIEARGEH-----GG-----VPKVVERWGDPHSSNCVLAASIDDSQNDPLLA   69 (430)
Q Consensus         2 ~~~~~~~~~~~--~~~~l~t~~~dg~i~vw~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~   69 (430)
                      |.-..|.|..-  ....+++|++||.++|-.+.+..     .+     ...+-+++.+|...|.++.++-    +.+.|-
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe----~~QKLT   87 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE----NNQKLT   87 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc----cccccc
Confidence            34444444433  23778999999999999886532     11     2234467889999976666544    345688


Q ss_pred             EeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccC
Q 014154           70 VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES  149 (430)
Q Consensus        70 ~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  149 (430)
                      +...+|.|.||-+-.|.-..++..-       ....+.....|+.+.       ..+.....||.+.|-+++.       
T Consensus        88 tSDt~GlIiVWmlykgsW~EEMiNn-------RnKSvV~SmsWn~dG-------~kIcIvYeDGavIVGsvdG-------  146 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEMINN-------RNKSVVVSMSWNLDG-------TKICIVYEDGAVIVGSVDG-------  146 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHHhhC-------cCccEEEEEEEcCCC-------cEEEEEEccCCEEEEeecc-------
Confidence            8999999999998777655544321       112333334455544       4777788888888877652       


Q ss_pred             CCcceEEeeecCC-CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-------eeEeeCCCCCCCCCCcCCcceeEEEE
Q 014154          150 SCSTVKSWNVCAS-GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-------KIWTAKPPPKNSLGIFTPTWFTSAAF  221 (430)
Q Consensus       150 ~~~~i~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (430)
                          -++|...-. .....+.|+++...++.+-.+|.+.+||....-       +.....+..   .  .-+..|..+.|
T Consensus       147 ----NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~---s--~~~~kia~i~w  217 (1189)
T KOG2041|consen  147 ----NRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIF---S--NFPTKIAEIEW  217 (1189)
T ss_pred             ----ceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeee---c--CCCccccceee
Confidence                256654332 335578899999999989999999999975321       101100000   0  00122344444


Q ss_pred             e------ecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---------CcEEEEE
Q 014154          222 L------SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---------GDLASVD  286 (430)
Q Consensus       222 ~------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---------~~i~iwd  286 (430)
                      .      ..|+...|+++..+|.+.|-.-.+...|+..-.+  ..+..+.|+++|..|++++.+         +.|.+|.
T Consensus       218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys  295 (1189)
T KOG2041|consen  218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS  295 (1189)
T ss_pred             ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec
Confidence            3      1568889999999999998766555555554443  678999999999999998765         3566665


Q ss_pred             ccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154          287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (430)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i  327 (430)
                      . -|+.+.+++.. ...|++++|-..|-.++.+ .|+.|++
T Consensus       296 p-~G~i~gtlkvp-g~~It~lsWEg~gLriA~A-vdsfiyf  333 (1189)
T KOG2041|consen  296 P-YGHIVGTLKVP-GSCITGLSWEGTGLRIAIA-VDSFIYF  333 (1189)
T ss_pred             c-chhheEEEecC-CceeeeeEEcCCceEEEEE-ecceEEE
Confidence            4 67778888876 7789999998777665554 3444433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.25  E-value=7.5e-09  Score=95.74  Aligned_cols=259  Identities=14%  Similarity=0.104  Sum_probs=154.5

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ..+++.++.+|.+..+|..++     +++-..... ..  +.+...   -.+..++.+..+|.|..||..+|+.+..+..
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG-----~~~W~~~~~-~~--~~~~p~---v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  173 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDG-----KELWRAKLS-SE--VLSPPL---VANGLVVVRTNDGRLTALDAATGERLWTYSR  173 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCC-----cEeeeeccC-ce--eecCCE---EECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence            467888899999999999887     444332221 11  111000   0134577788899999999999998776654


Q ss_pred             cCCCC-CCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc--------
Q 014154           94 AGDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT--------  164 (430)
Q Consensus        94 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~--------  164 (430)
                      ..+.. ......++    +.+          +.++.+..++.+..+++....          .+|.......        
T Consensus       174 ~~~~~~~~~~~sp~----~~~----------~~v~~~~~~g~v~ald~~tG~----------~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       174 VTPALTLRGSASPV----IAD----------GGVLVGFAGGKLVALDLQTGQ----------PLWEQRVALPKGRTELER  229 (377)
T ss_pred             CCCceeecCCCCCE----EEC----------CEEEEECCCCEEEEEEccCCC----------EeeeeccccCCCCCchhh
Confidence            21100 00000011    111          355666666766655543221          1333211000        


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          165 IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       165 i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      +..+.-+|  .+..+++++.+|.++.||..+++.++......           ......    .+..++.++.+|.|..+
T Consensus       230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-----------~~~p~~----~~~~vyv~~~~G~l~~~  294 (377)
T TIGR03300       230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-----------YQGPAV----DDNRLYVTDADGVVVAL  294 (377)
T ss_pred             hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-----------ccCceE----eCCEEEEECCCCeEEEE
Confidence            00010111  35678888899999999999999888765211           111222    45678888899999999


Q ss_pred             ECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE-EEEecCCCCeEEEEe
Q 014154          243 DTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR-SIARHPTLPIIASCG  320 (430)
Q Consensus       243 d~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~  320 (430)
                      |..+++. +..... ......+...  .+..|++++.+|.|+++|..+++.+..+..+ ...+. ...+. + ..|+.++
T Consensus       295 d~~tG~~-~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~-~~~~~~sp~~~-~-~~l~v~~  368 (377)
T TIGR03300       295 DRRSGSE-LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD-GSGIASPPVVV-G-DGLLVQT  368 (377)
T ss_pred             ECCCCcE-EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-CCccccCCEEE-C-CEEEEEe
Confidence            9988763 333311 1112222222  3568999999999999999999999988865 33332 22332 3 3588888


Q ss_pred             CCCcEEEE
Q 014154          321 LDSYLRFW  328 (430)
Q Consensus       321 ~dg~i~iw  328 (430)
                      .||.|+.|
T Consensus       369 ~dG~l~~~  376 (377)
T TIGR03300       369 RDGDLYAF  376 (377)
T ss_pred             CCceEEEe
Confidence            99998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=4.1e-11  Score=100.97  Aligned_cols=164  Identities=13%  Similarity=0.184  Sum_probs=120.9

Q ss_pred             EEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC----CcceEE
Q 014154          178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----RRPVMS  253 (430)
Q Consensus       178 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~  253 (430)
                      ++.+.+..|.+-|++++-...- ..          .+.|.++.|  ...+++++.|+.+|.|..+|++..    ..+.+.
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf-~s----------ksDVfAlQf--~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r  294 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSF-QS----------KSDVFALQF--AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR  294 (425)
T ss_pred             ecccccceeEEEEeeccccccc-cc----------chhHHHHHh--cccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence            4556666888889887644321 11          156888888  556789999999999999999974    222333


Q ss_pred             EeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeE---EeeeeCCCCCCeEE--EEecCCCCeEEEEeCCCcEEE
Q 014154          254 FDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKL---LGCFIGKCSGSIRS--IARHPTLPIIASCGLDSYLRF  327 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~--i~~~~~~~~l~s~~~dg~i~i  327 (430)
                      + .|.+.|+++..-. ++++|++.+.+|.|.+||++.-++   +.++.+| -..-.-  +-.++....+++++.|...||
T Consensus       295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH-vN~~a~l~~~v~~eeg~I~s~GdDcytRi  372 (425)
T KOG2695|consen  295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH-VNLSAYLPAHVKEEEGSIFSVGDDCYTRI  372 (425)
T ss_pred             E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc-cccccccccccccccceEEEccCeeEEEE
Confidence            3 3778999988765 678999999999999999998777   8899988 332222  233456678899999999999


Q ss_pred             EECCCCceeeEEEeeccccc-eEEeeeccc
Q 014154          328 WDIKTRQLLSAVFLKQHLNE-VVFDSAFAD  356 (430)
Q Consensus       328 wd~~~~~~~~~~~~~~~~~~-~v~~~~~s~  356 (430)
                      |.++.|.++.++.++..... .+.+++|..
T Consensus       373 Wsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  373 WSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             EecccCceeeccCCCCccccccccceehhc
Confidence            99999999998665443322 356666654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.25  E-value=1.7e-08  Score=89.80  Aligned_cols=308  Identities=11%  Similarity=0.042  Sum_probs=182.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCe---------------EEE
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGL---------------TDI   79 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~---------------i~i   79 (430)
                      .+.+....---|.+|.-...     ..+.++. |.. |.  .+.+  +|.++||.+-+..+.               +.+
T Consensus        44 G~~l~~~~~~~V~~~~g~~~-----~~l~~~~-~~~-V~--~~~f--SP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v  112 (561)
T COG5354          44 GTYLFSEHAAGVECWGGPSK-----AKLVRFR-HPD-VK--YLDF--SPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV  112 (561)
T ss_pred             chheehhhccceEEccccch-----hheeeee-cCC-ce--eccc--CcccceeeeeccCCccChhhccCCccccCceeE
Confidence            44444444456888887765     3333333 322 22  2333  788899998655444               899


Q ss_pred             ecCCCCcccceeeccCCCCCCCCCCc-eEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee
Q 014154           80 LNPLNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN  158 (430)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~  158 (430)
                      ||..+|..+..+......    .... +  +. |....        .+++-..++.+.|+.+.  ..+.   ....+...
T Consensus       113 wd~~sg~iv~sf~~~~q~----~~~Wp~--~k-~s~~D--------~y~ARvv~~sl~i~e~t--~n~~---~~p~~~lr  172 (561)
T COG5354         113 WDIASGMIVFSFNGISQP----YLGWPV--LK-FSIDD--------KYVARVVGSSLYIHEIT--DNIE---EHPFKNLR  172 (561)
T ss_pred             EeccCceeEeeccccCCc----ccccce--ee-eeecc--------hhhhhhccCeEEEEecC--Cccc---cCchhhcc
Confidence            999999988887763211    0011 2  12 22221        33333456677777751  1111   11111111


Q ss_pred             ecCCCceEEEEEcCCC--CEEEE-----EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          159 VCASGTIAFSKVDISE--KFSLF-----GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       159 ~~~~~~i~~~~~~~~~--~~l~~-----~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                         ...|....++|.+  ..|+.     ....+++++|.+..+..+.+-....         ..-..+.|  ++.|.+|+
T Consensus       173 ---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk---------~~~~qLkW--~~~g~~ll  238 (561)
T COG5354         173 ---PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK---------VSGVQLKW--QVLGKYLL  238 (561)
T ss_pred             ---ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe---------ecccEEEE--ecCCceEE
Confidence               2457777888853  33443     4456788999887555443322211         11123445  56666554


Q ss_pred             EEe-----------CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEeeeeC
Q 014154          232 AGT-----------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIG  298 (430)
Q Consensus       232 s~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~  298 (430)
                      +-.           ....++|+++.....++  ...-.++|...+|.|.++.+++.+  .+-.+.++|++.. +...+. 
T Consensus       239 ~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P-  314 (561)
T COG5354         239 VLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP-  314 (561)
T ss_pred             EEEEEeeecccceeccceEEEEeecccccce--eccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC-
Confidence            311           13467888888533322  224568999999999987776554  6788999999776 444443 


Q ss_pred             CCCCCeEEEEecCCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-ccc--C----CCCc
Q 014154          299 KCSGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA--A----DAPM  368 (430)
Q Consensus       299 ~~~~~v~~i~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~--~----~d~~  368 (430)
                        ...=+.+.|+|.+++++.++.|   |.+-+||......+..- +.+.   ...-+.|+||+.+ .+.  +    -|+.
T Consensus       315 --e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~-~~~~---n~s~~~wspd~qF~~~~~ts~k~~~Dn~  388 (561)
T COG5354         315 --EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGA-FNGL---NTSYCDWSPDGQFYDTDTTSEKLRVDNS  388 (561)
T ss_pred             --CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEE-eecC---CceEeeccCCceEEEecCCCcccccCcc
Confidence              3455778899999999998876   67999998866555422 3333   1345789999998 222  2    2678


Q ss_pred             eEecCCCCC
Q 014154          369 LEIQNGNDT  377 (430)
Q Consensus       369 i~~~~~~~~  377 (430)
                      +.+|+....
T Consensus       389 i~l~~v~g~  397 (561)
T COG5354         389 IKLWDVYGA  397 (561)
T ss_pred             eEEEEecCc
Confidence            999987543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.23  E-value=8.8e-10  Score=93.03  Aligned_cols=255  Identities=11%  Similarity=0.138  Sum_probs=169.8

Q ss_pred             ceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC-CCcccceeeccCCCCCCCCCCceEEEEEeecCcc
Q 014154           39 PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQRE  117 (430)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  117 (430)
                      +.++..+.+|.+.++...+-.    -.+-+++.+.|.+++||--. .++.-..+....+       .+...+.... +. 
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~----~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP-------~~~~~~~y~~-e~-   80 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIP----KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMP-------SPCSAMEYVS-ES-   80 (404)
T ss_pred             hhhhhhhcCchhhhhhheecc----CCCCeEEccccceeeeEEeccccccCchhhhhCC-------CCceEeeeec-cc-
Confidence            356677888877765444332    33459999999999999432 3443333332222       2344333333 22 


Q ss_pred             cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI  197 (430)
Q Consensus       118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  197 (430)
                            ..++.+...|++.-+.++..-.    .-..++.|. .|...+..+-|+-...++++.+.|..+.-.-.+.+..+
T Consensus        81 ------~~L~vg~~ngtvtefs~sedfn----km~~~r~~~-~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l  149 (404)
T KOG1409|consen   81 ------RRLYVGQDNGTVTEFALSEDFN----KMTFLKDYL-AHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL  149 (404)
T ss_pred             ------eEEEEEEecceEEEEEhhhhhh----hcchhhhhh-hhhcceeeEEecCCceeEEEeccccceEEEeeccCCcc
Confidence                  4788888888888777653221    111344443 67888999999988999999999976654444444433


Q ss_pred             EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC-CCcceEEEeecCCCeEEEEecCCCCEEEEE
Q 014154          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (430)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~  276 (430)
                      ..+.-.          .+.+++.|    +-.+...|...|.|.+..+.. .-.++..+.+|.+.+.+++|.|....|++|
T Consensus       150 g~Y~~~----------~~~t~~~~----d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg  215 (404)
T KOG1409|consen  150 GGYNFE----------TPASALQF----DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSG  215 (404)
T ss_pred             cceEee----------ccCCCCce----eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEec
Confidence            222111          11222222    111455566666666555432 223678899999999999999999999999


Q ss_pred             eCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          277 NGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       277 ~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      ..|..+.+||+--.+- ..++.+| ...|..+..-+--+.|++++.||.|-+|+.+.
T Consensus       216 ~~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  216 ASDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             cccCceEEEeccCCcceeeeeccc-hhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            9999999999965443 4567777 78899888888888999999999999999864

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.21  E-value=1.7e-07  Score=83.34  Aligned_cols=259  Identities=13%  Similarity=0.095  Sum_probs=152.5

Q ss_pred             CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc---------cCCeeEEEEeeecCc
Q 014154           75 GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---------TKGKASMRSIEVTKV  145 (430)
Q Consensus        75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~v~~~~~~~~  145 (430)
                      ++|.+.|..+++.+..+..-    +.|+     .+ +.+...       ...++.+         .+..+.|++..... 
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G----~~P~-----~~-~spDg~-------~lyva~~~~~R~~~G~~~d~V~v~D~~t~~-   88 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGG----FLPN-----PV-VASDGS-------FFAHASTVYSRIARGKRTDYVEVIDPQTHL-   88 (352)
T ss_pred             ceEEEEECCCCEEEEEEEcc----CCCc-----ee-ECCCCC-------EEEEEeccccccccCCCCCEEEEEECccCc-
Confidence            89999999998888777641    1111     11 222222       2334444         56778888876443 


Q ss_pred             cccCCCcceEEeeec------CCCceEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCccee
Q 014154          146 SAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGG-K-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~-~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (430)
                             .+.-..+.      .......++++|+|++|++.. . ++.|.+.|+.+++.+.++....            .
T Consensus        89 -------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~------------~  149 (352)
T TIGR02658        89 -------PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD------------C  149 (352)
T ss_pred             -------EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC------------C
Confidence                   22222211      112334788999999999766 3 6899999999999988876532            0


Q ss_pred             EEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc-eEEEe-ecC--CCeE-EEEecC-CCCEEEEEeCCCcEEEEEccCC-
Q 014154          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP-VMSFD-FRE--TPIK-AVAEEP-DSFNIYIGNGSGDLASVDIRTG-  290 (430)
Q Consensus       218 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~--~~i~-~~~~sp-~~~~l~~~~~d~~i~iwd~~~~-  290 (430)
                      ...|. ..+...+ +-+.||......+...... ..... .+.  .++. .-.|.+ +++++++..+ |.|.+.|+... 
T Consensus       150 ~~vy~-t~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~  226 (352)
T TIGR02658       150 YHIFP-TANDTFF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD  226 (352)
T ss_pred             cEEEE-ecCCccE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence            11111 1222222 2234555544433322110 11111 011  0110 003455 8888888776 99999996433 


Q ss_pred             ----eEEeeeeCC------CCCCeEEEEecCCCCeEEEEe----------CCCcEEEEECCCCceeeEEEeeccccceEE
Q 014154          291 ----KLLGCFIGK------CSGSIRSIARHPTLPIIASCG----------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVF  350 (430)
Q Consensus       291 ----~~~~~~~~~------~~~~v~~i~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  350 (430)
                          +....+...      ..+.+.-++++|+++.++...          ..+.|.++|..+++.+..+..    ...++
T Consensus       227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~  302 (352)
T TIGR02658       227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEID  302 (352)
T ss_pred             ceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCcee
Confidence                223222211      123344599999998888753          124799999999999998643    23468


Q ss_pred             eeecccccc-c--cccCCCCceEecCCCCC
Q 014154          351 DSAFADKEV-A--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       351 ~~~~s~~g~-~--~~~~~d~~i~~~~~~~~  377 (430)
                      .++++|||+ +  ++...++.|.++|....
T Consensus       303 ~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       303 SINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             eEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            999999999 5  34446788999997664

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=4e-09  Score=98.31  Aligned_cols=197  Identities=11%  Similarity=-0.030  Sum_probs=119.4

Q ss_pred             CceEEEEEcCCCCE--E-EEEeCC--CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-C
Q 014154          163 GTIAFSKVDISEKF--S-LFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D  236 (430)
Q Consensus       163 ~~i~~~~~~~~~~~--l-~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d  236 (430)
                      .....-.|+|+|+.  + ++...+  ..|++.++.+++....... .         ......+|  +|||+.|+..+. +
T Consensus       185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~---------g~~~~p~w--SPDG~~Laf~s~~~  252 (428)
T PRK01029        185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-Q---------GNQLMPTF--SPRKKLLAFISDRY  252 (428)
T ss_pred             CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-C---------CCccceEE--CCCCCEEEEEECCC
Confidence            44567799999875  2 233333  3588889887654332221 1         22345678  899988887553 2


Q ss_pred             C----cEEEEECCCC--CcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEE--EccC-CeEEeeeeCCCCCCeEE
Q 014154          237 H----QVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASV--DIRT-GKLLGCFIGKCSGSIRS  306 (430)
Q Consensus       237 g----~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iw--d~~~-~~~~~~~~~~~~~~v~~  306 (430)
                      |    .+.+|++..+  ..+......+.......+|+|||+.|+..+ .+|...+|  ++.. +.....+..+ ...+..
T Consensus       253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~  331 (428)
T PRK01029        253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSC  331 (428)
T ss_pred             CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccc
Confidence            2    3444776642  222333333323456789999999877665 45654454  5432 2233444443 456778


Q ss_pred             EEecCCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cc-cCC--CCceEecCCCC
Q 014154          307 IARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NA-AAD--APMLEIQNGND  376 (430)
Q Consensus       307 i~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~-~~~--d~~i~~~~~~~  376 (430)
                      ..|+|||++|+..+.+   ..|.+||+.+++....  ..+  ...+....|+|||+. +. +..  ...|.+++...
T Consensus       332 p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L--t~~--~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        332 PAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL--TTS--PENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             eeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc--cCC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence            8999999988876543   3699999998876543  212  223467899999987 33 332  34566666544

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.20  E-value=1.3e-08  Score=83.22  Aligned_cols=222  Identities=9%  Similarity=-0.005  Sum_probs=143.7

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE-cCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~-~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                      ..++.++..|...+|++...       ++..++.+... ..|.-+.- .-..-.+..++.|.++++.+++.+........
T Consensus        85 ~~la~gG~~g~fd~~~~~tn-------~~h~~~cd~sn-n~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~  156 (344)
T KOG4532|consen   85 VTLADGGASGQFDLFACNTN-------DGHLYQCDVSN-NDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN  156 (344)
T ss_pred             cEEEeccccceeeeecccCc-------ccceeeecccc-cchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec
Confidence            46777778888888886533       33555554322 21111110 11223456688888999888865433322222


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE--EeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS--FDFRETPIKAVAEEPDSFNIYIGNGSG  280 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~i~~~~~sp~~~~l~~~~~d~  280 (430)
                      ..         -.+.++++  ++++.++++.+....|..|.+......+..  ....+..-.+..|+.....+|+++.||
T Consensus       157 ~~---------~~~ns~~~--snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg  225 (344)
T KOG4532|consen  157 QN---------LTQNSLHY--SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDG  225 (344)
T ss_pred             cc---------cceeeeEE--cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCC
Confidence            11         12667778  899999999999999999999864433332  222344567889999999999999999


Q ss_pred             cEEEEEccCCeEE----eeeeCCCCCCeEEEEecCCCC--eEEEEeCCCcEEEEECCCCceeeEEEeec-----cccceE
Q 014154          281 DLASVDIRTGKLL----GCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQLLSAVFLKQ-----HLNEVV  349 (430)
Q Consensus       281 ~i~iwd~~~~~~~----~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~v  349 (430)
                      ++.|||+|.....    ..-+.||.+.++.+.|++-|.  +|+..-.-+.+.+-|++++...+.+....     |...-+
T Consensus       226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~i  305 (344)
T KOG4532|consen  226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHI  305 (344)
T ss_pred             cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccc
Confidence            9999999865432    222345689999999998663  45555556789999999988776653221     212225


Q ss_pred             EeeeccccccccccC
Q 014154          350 FDSAFADKEVANAAA  364 (430)
Q Consensus       350 ~~~~~s~~g~~~~~~  364 (430)
                      +.-.|+.++..+...
T Consensus       306 fgt~f~~~n~s~~v~  320 (344)
T KOG4532|consen  306 FGTNFNNENESNDVK  320 (344)
T ss_pred             ccccccCCCcccccc
Confidence            566666665553333

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.19  E-value=9.4e-09  Score=95.84  Aligned_cols=329  Identities=12%  Similarity=0.019  Sum_probs=203.1

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCC-ceeEEeecCCeEEEecCCCCcccceee
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      .+++++++-.|.|.+||...+     .++..+..|..++.-+.+-+. .++. .+|++-.....|.+|+..+|+......
T Consensus        79 ~lliAsaD~~GrIil~d~~~~-----s~~~~l~~~~~~~qdl~W~~~-rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~  152 (1062)
T KOG1912|consen   79 QLLIASADISGRIILVDFVLA-----SVINWLSHSNDSVQDLCWVPA-RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD  152 (1062)
T ss_pred             ceeEEeccccCcEEEEEehhh-----hhhhhhcCCCcchhheeeeec-cCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence            477899999999999999986     666677778788654444442 2233 567777777899999999998776654


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC--C-------
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--G-------  163 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~--~-------  163 (430)
                      .        ......++.+-+.+.       ..+..-+..|.+.+.+..-..    ..++..+.+.+...  .       
T Consensus       153 y--------s~~iLs~f~~DPfd~-------rh~~~l~s~g~vl~~~~l~~s----ep~~pgk~~qI~sd~Sdl~~lere  213 (1062)
T KOG1912|consen  153 Y--------SHEILSCFRVDPFDS-------RHFCVLGSKGFVLSCKDLGLS----EPDVPGKEFQITSDHSDLAHLERE  213 (1062)
T ss_pred             c--------CCcceeeeeeCCCCc-------ceEEEEccCceEEEEeccCCC----CCCCCceeEEEecCccchhhhhhh
Confidence            3        112233333333332       233333444444444322111    12223333332211  0       


Q ss_pred             ------------------ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          164 ------------------TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       164 ------------------~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                                        ....++|+|.-+.++.......+.++|++-..++.......         ..+.-+.+.|.|
T Consensus       214 ~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier---------~~akfv~vlP~~  284 (1062)
T KOG1912|consen  214 TATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIER---------GGAKFVDVLPDP  284 (1062)
T ss_pred             hhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEecc---------CCcceeEeccCC
Confidence                              01235678876666666777789999997655555544333         223445555555


Q ss_pred             CCCEEEEEeCCCcEEEEECCC-----------------------------------------------------------
Q 014154          226 DHRKFVAGTNDHQVRLYDTSA-----------------------------------------------------------  246 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~-----------------------------------------------------------  246 (430)
                      ....|++...||.+.+|--+.                                                           
T Consensus       285 ~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~  364 (1062)
T KOG1912|consen  285 RRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLS  364 (1062)
T ss_pred             CcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhh
Confidence            556677777777777664332                                                           


Q ss_pred             -CCcc--------------------eE----------EEeecCCCeEEEEecC-----------CC-------CEEEEEe
Q 014154          247 -QRRP--------------------VM----------SFDFRETPIKAVAEEP-----------DS-------FNIYIGN  277 (430)
Q Consensus       247 -~~~~--------------------~~----------~~~~~~~~i~~~~~sp-----------~~-------~~l~~~~  277 (430)
                       ++..                    ..          ...+|....++....|           .+       .+++.|.
T Consensus       365 ~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT  444 (1062)
T KOG1912|consen  365 NGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGT  444 (1062)
T ss_pred             cCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeec
Confidence             1000                    00          0011323333333322           11       4678999


Q ss_pred             CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE---------eCCCcEEEEECCCCceeeEEEeeccccce
Q 014154          278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC---------GLDSYLRFWDIKTRQLLSAVFLKQHLNEV  348 (430)
Q Consensus       278 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  348 (430)
                      ..|+|.++|+.++.....+..| ...|.++.|-.+..++-.+         +.-+.+.|-|+++|....--.+++.....
T Consensus       445 ~sGTV~vvdvst~~v~~~fsvh-t~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~desp  523 (1062)
T KOG1912|consen  445 NSGTVDVVDVSTNAVAASFSVH-TSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESP  523 (1062)
T ss_pred             CCceEEEEEecchhhhhhhccc-ccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCc
Confidence            9999999999999998899998 9999999997766544322         22245778899998766532244555667


Q ss_pred             EEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          349 VFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       349 v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      |..+..|..|+| +..-.+.-+.+|+....
T Consensus       524 I~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  524 IRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             ceeeeecccCceEEEEecccchHHHhhccc
Confidence            899999999999 77889999999998543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.18  E-value=8.2e-08  Score=89.22  Aligned_cols=312  Identities=13%  Similarity=0.100  Sum_probs=178.9

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCC--CCc-----ceeeeeecCCCCCceeEEeecCCeEEEecCCCCc
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH--SSN-----CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD   86 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~   86 (430)
                      ..++++++.+|.+.-+|..++     +.+=......  ...     ..+.-..  .-++..++.++.+|.+..+|..+|+
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~v~v~~~~g~l~ald~~tG~  141 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTG-----KEIWSVDLSEKDGWFSKNKSALLSGGV--TVAGGKVYIGSEKGQVYALNAEDGE  141 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCC-----cEeeEEcCCCccccccccccccccccc--EEECCEEEEEcCCCEEEEEECCCCC
Confidence            368888899999999999887     4432221111  000     0000000  1123457888899999999999999


Q ss_pred             ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (430)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~  166 (430)
                      .+.........    ...++    +.   .       +.++.+..++.+..++.....          .+|......+..
T Consensus       142 ~~W~~~~~~~~----~ssP~----v~---~-------~~v~v~~~~g~l~ald~~tG~----------~~W~~~~~~~~~  193 (394)
T PRK11138        142 VAWQTKVAGEA----LSRPV----VS---D-------GLVLVHTSNGMLQALNESDGA----------VKWTVNLDVPSL  193 (394)
T ss_pred             CcccccCCCce----ecCCE----EE---C-------CEEEEECCCCEEEEEEccCCC----------EeeeecCCCCcc
Confidence            88776531100    00111    11   1       466666666666555543322          245543321111


Q ss_pred             EE--EEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC-CCCcCCcce-eEEEEeecCCCCEEEEEeCCCcEE
Q 014154          167 FS--KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS-LGIFTPTWF-TSAAFLSIDDHRKFVAGTNDHQVR  240 (430)
Q Consensus       167 ~~--~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~  240 (430)
                      .+  ..+|  .+..++.++.++.+..+|..+++.+++........ ........+ .....    .+..++.++.+|.+.
T Consensus       194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v----~~~~vy~~~~~g~l~  269 (394)
T PRK11138        194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV----VGGVVYALAYNGNLV  269 (394)
T ss_pred             cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE----ECCEEEEEEcCCeEE
Confidence            00  0112  23467778889999999999999887754321100 000000000 11111    245677778899999


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      .+|..+++. +-....  .....+..  .+..|+.++.+|.+..+|..+++.+............+...  .+.+|+.++
T Consensus       270 ald~~tG~~-~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~  342 (394)
T PRK11138        270 ALDLRSGQI-VWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGD  342 (394)
T ss_pred             EEECCCCCE-EEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEe
Confidence            999998764 322221  11122222  45688888899999999999998876543210111222222  245788889


Q ss_pred             CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCC
Q 014154          321 LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       321 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      .||.|++.|..+|+.+....+.+.  .......+ .+++++.++.||.|..++.
T Consensus       343 ~~G~l~~ld~~tG~~~~~~~~~~~--~~~s~P~~-~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        343 SEGYLHWINREDGRFVAQQKVDSS--GFLSEPVV-ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCC--cceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence            999999999999999887544211  12222233 3667788899999988764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.18  E-value=1.1e-06  Score=75.54  Aligned_cols=282  Identities=13%  Similarity=0.100  Sum_probs=163.4

Q ss_pred             CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec---CCeEEEecCCC--CcccceeeccCCC
Q 014154           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN--GDLRVAISNAGDS   97 (430)
Q Consensus        23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~---dg~i~iwd~~~--~~~~~~~~~~~~~   97 (430)
                      +.-|.+|++.+.. +....+... ......+-+++    +|++++|.++-.   +|.|..|.+..  |++.. +... . 
T Consensus        15 s~gI~v~~ld~~~-g~l~~~~~v-~~~~nptyl~~----~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-ln~~-~-   85 (346)
T COG2706          15 SQGIYVFNLDTKT-GELSLLQLV-AELGNPTYLAV----NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-LNRQ-T-   85 (346)
T ss_pred             CCceEEEEEeCcc-cccchhhhc-cccCCCceEEE----CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-eecc-c-
Confidence            5679999998642 222222222 23444445555    566778888654   47787777754  44221 1110 0 


Q ss_pred             CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec--------CCCceEEEE
Q 014154           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIAFSK  169 (430)
Q Consensus        98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--------~~~~i~~~~  169 (430)
                        .+ ..+...+.+-....       -.+.+....|.+.|+-+.....    -...+.+....        ....+....
T Consensus        86 --~~-g~~p~yvsvd~~g~-------~vf~AnY~~g~v~v~p~~~dG~----l~~~v~~~~h~g~~p~~rQ~~~h~H~a~  151 (346)
T COG2706          86 --LP-GSPPCYVSVDEDGR-------FVFVANYHSGSVSVYPLQADGS----LQPVVQVVKHTGSGPHERQESPHVHSAN  151 (346)
T ss_pred             --cC-CCCCeEEEECCCCC-------EEEEEEccCceEEEEEcccCCc----cccceeeeecCCCCCCccccCCccceee
Confidence              01 11223333333221       1333444567888887754321    11111111100        012378899


Q ss_pred             EcCCCCEEEEEe--CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCC
Q 014154          170 VDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSA  246 (430)
Q Consensus       170 ~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~  246 (430)
                      +.|++++|++..  .| .|.+|++..+.........-      ......+.+.|  +|++++..+.+ -+++|.+|....
T Consensus       152 ~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v------~~G~GPRHi~F--Hpn~k~aY~v~EL~stV~v~~y~~  222 (346)
T COG2706         152 FTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEV------KPGAGPRHIVF--HPNGKYAYLVNELNSTVDVLEYNP  222 (346)
T ss_pred             eCCCCCEEEEeecCCc-eEEEEEcccCcccccccccc------CCCCCcceEEE--cCCCcEEEEEeccCCEEEEEEEcC
Confidence            999999999875  35 79999998765533222111      11245688999  89999776655 588999999887


Q ss_pred             CCcceEEEeec---------CCCeEEEEecCCCCEEEEEeCC-CcEEEEEcc--CCeE--EeeeeCCCCCCeEEEEecCC
Q 014154          247 QRRPVMSFDFR---------ETPIKAVAEEPDSFNIYIGNGS-GDLASVDIR--TGKL--LGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       247 ~~~~~~~~~~~---------~~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~--~~~~--~~~~~~~~~~~v~~i~~~~~  312 (430)
                      ....+..++.+         ......|.++|||++|+++... ..|.+|.+.  .+++  +.....+ ....+.+.|+|.
T Consensus       223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te-g~~PR~F~i~~~  301 (346)
T COG2706         223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE-GQFPRDFNINPS  301 (346)
T ss_pred             CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-CcCCccceeCCC
Confidence            32223333322         2356788999999999988642 467777665  3433  2222222 344789999999


Q ss_pred             CCeEEEEeCCC-cEEEEECC--CCceee
Q 014154          313 LPIIASCGLDS-YLRFWDIK--TRQLLS  337 (430)
Q Consensus       313 ~~~l~s~~~dg-~i~iwd~~--~~~~~~  337 (430)
                      +++|+++..++ .|.+|...  +|++-.
T Consensus       302 g~~Liaa~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         302 GRFLIAANQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             CCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence            99999998654 58888664  555443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=2.3e-08  Score=89.85  Aligned_cols=272  Identities=10%  Similarity=0.053  Sum_probs=168.9

Q ss_pred             CCCCceeEEeec-----------CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc
Q 014154           62 SQNDPLLAVARK-----------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (430)
Q Consensus        62 ~p~g~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  130 (430)
                      +|..+||++=+.           ...++|||+.+|.....|..+..      ...+-.+.-|..+.        .+++.-
T Consensus       258 SP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~------~~~~WP~frWS~Dd--------Ky~Arm  323 (698)
T KOG2314|consen  258 SPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKS------PYLKWPIFRWSHDD--------KYFARM  323 (698)
T ss_pred             CCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCC------CccccceEEeccCC--------ceeEEe
Confidence            778889998441           25699999999999888876311      11222344454443        555555


Q ss_pred             cCCeeEEEEeeecCccccCCCcceEEeeec--CCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEeeCCC
Q 014154          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       131 ~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~  203 (430)
                      ....+.|+.-.           ...+++..  .-..|....|+|.+++||.-+..     ..+.+..+.+++.+++...+
T Consensus       324 ~~~sisIyEtp-----------sf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf  392 (698)
T KOG2314|consen  324 TGNSISIYETP-----------SFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF  392 (698)
T ss_pred             ccceEEEEecC-----------ceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce
Confidence            55667777532           12222211  12457788999998888864432     24666667666666654443


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEE----------eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAG----------TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI  273 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l  273 (430)
                      .           |..+..+-..+|.+|+.-          +.-..+.|+.++....|+..+... ..|...+|-|.|..+
T Consensus       393 n-----------VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk-e~vi~FaWEP~gdkF  460 (698)
T KOG2314|consen  393 N-----------VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK-ESVIAFAWEPHGDKF  460 (698)
T ss_pred             e-----------eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc-hheeeeeeccCCCeE
Confidence            2           333333226667776642          122246677777656666666643 688899999999887


Q ss_pred             EEEeCC---CcEEEEEccC-C---eEEeeeeCCCCCCeEEEEecCCCCeEEEE---eCCCcEEEEECCCCceeeEEEeec
Q 014154          274 YIGNGS---GDLASVDIRT-G---KLLGCFIGKCSGSIRSIARHPTLPIIASC---GLDSYLRFWDIKTRQLLSAVFLKQ  343 (430)
Q Consensus       274 ~~~~~d---~~i~iwd~~~-~---~~~~~~~~~~~~~v~~i~~~~~~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~  343 (430)
                      ++-+..   .++.+|-+.+ .   +++..+..   ...+.+.|+|.|++++.+   |..|.+.++|+....+..+- ...
T Consensus       461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~-~~e  536 (698)
T KOG2314|consen  461 AVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA-SPE  536 (698)
T ss_pred             EEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-Ccc
Confidence            766543   5688888773 2   23444443   356889999999998776   46789999998743333221 223


Q ss_pred             cccceEEeeeccccccc-cccCC------CCceEecCCCC
Q 014154          344 HLNEVVFDSAFADKEVA-NAAAD------APMLEIQNGND  376 (430)
Q Consensus       344 ~~~~~v~~~~~s~~g~~-~~~~~------d~~i~~~~~~~  376 (430)
                      |.  ..+.+.|.|.|++ ++++.      |.--++|+...
T Consensus       537 h~--~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  537 HF--AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             cc--ccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            42  2478999999999 44443      44456666543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.16  E-value=1.1e-07  Score=97.92  Aligned_cols=168  Identities=10%  Similarity=-0.010  Sum_probs=112.2

Q ss_pred             eEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC------CCCCCCcCCcceeEEEEeecCCCC-EEEEEeCC
Q 014154          165 IAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP------KNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTND  236 (430)
Q Consensus       165 i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d  236 (430)
                      ...++++| ++.++++.+.++.|++||..++.... +....      ..............+++  +|++. ++++-+.+
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIav--spdG~~LYVADs~n  761 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISL--SPDLKELYIADSES  761 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEE--eCCCCEEEEEECCC
Confidence            35789999 55566666778899999998765432 11110      00000001134667888  78887 55555667


Q ss_pred             CcEEEEECCCCCcceEE------------Eeec--------CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee
Q 014154          237 HQVRLYDTSAQRRPVMS------------FDFR--------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~------------~~~~--------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  296 (430)
                      +.|++||+.++...+..            +..+        -....+++++++|+.+++-..++.|++||..++......
T Consensus       762 ~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia  841 (1057)
T PLN02919        762 SSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA  841 (1057)
T ss_pred             CeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence            89999999875421110            0000        012358899999998888888999999999887664322


Q ss_pred             eCC------------CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154          297 IGK------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       297 ~~~------------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  335 (430)
                      ...            .-.....++++++|+++++-+.++.|++||+.+++.
T Consensus       842 G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        842 GTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            100            012567899999999888888999999999998865

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.15  E-value=7.3e-08  Score=85.87  Aligned_cols=258  Identities=15%  Similarity=0.126  Sum_probs=150.4

Q ss_pred             CceEEEEccCCCCCcceeeeecCCCCCC--cc-eeeeeecCCCCCceeEEeecCCeEEEecCCCCc-ccceeeccCC---
Q 014154           24 GLIKVIEARGEHGGVPKVVERWGDPHSS--NC-VLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGD---   96 (430)
Q Consensus        24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~---   96 (430)
                      +.+.+||..++     .++..+.....+  .. ++.++.++.    |+|-- ....+.|+++ ++. ....+....+   
T Consensus       108 n~~~vwd~~sg-----~iv~sf~~~~q~~~~Wp~~k~s~~D~----y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi  176 (561)
T COG5354         108 NNVFVWDIASG-----MIVFSFNGISQPYLGWPVLKFSIDDK----YVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGI  176 (561)
T ss_pred             CceeEEeccCc-----eeEeeccccCCcccccceeeeeecch----hhhhh-ccCeEEEEec-CCccccCchhhccccce
Confidence            46999999998     777777765554  33 566666444    44433 3356999987 332 1222222111   


Q ss_pred             --CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           97 --SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        97 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                        -.++|..+.-. +++|.+..            ....+.+++|++......     .+..++.+    .=..+.|++.|
T Consensus       177 ~dFsisP~~n~~~-la~~tPEk------------~~kpa~~~i~sIp~~s~l-----~tk~lfk~----~~~qLkW~~~g  234 (561)
T COG5354         177 LDFSISPEGNHDE-LAYWTPEK------------LNKPAMVRILSIPKNSVL-----VTKNLFKV----SGVQLKWQVLG  234 (561)
T ss_pred             eeEEecCCCCCce-EEEEcccc------------CCCCcEEEEEEccCCCee-----eeeeeEee----cccEEEEecCC
Confidence              11112211111 33333322            223445666666533210     01112221    12346677777


Q ss_pred             CEEEEEe-----------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE--eCCCcEEE
Q 014154          175 KFSLFGG-----------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG--TNDHQVRL  241 (430)
Q Consensus       175 ~~l~~~~-----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~i  241 (430)
                      ++|+.-.           .+.+++|+++......... .         ..++|...+|  .|.++.+++.  -.+..+.+
T Consensus       235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~---------~~~pVhdf~W--~p~S~~F~vi~g~~pa~~s~  302 (561)
T COG5354         235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-D---------LKDPVHDFTW--EPLSSRFAVISGYMPASVSV  302 (561)
T ss_pred             ceEEEEEEEeeecccceeccceEEEEeecccccceec-c---------ccccceeeee--cccCCceeEEecccccceee
Confidence            7765421           1345777777632221111 1         1277999999  7777766554  47888999


Q ss_pred             EECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       242 wd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      +|++..    ..+...+..=..+.|+|.+++++.++-|   |.|.+||...... +..+.+.   ...-+.|+|+++++.
T Consensus       303 ~~lr~N----l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---n~s~~~wspd~qF~~  375 (561)
T COG5354         303 FDLRGN----LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---NTSYCDWSPDGQFYD  375 (561)
T ss_pred             cccccc----eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---CceEeeccCCceEEE
Confidence            999963    2333444566778899999999998766   7799999865544 4466654   345568999999887


Q ss_pred             EEe------CCCcEEEEECCCC
Q 014154          318 SCG------LDSYLRFWDIKTR  333 (430)
Q Consensus       318 s~~------~dg~i~iwd~~~~  333 (430)
                      +..      .|..|.|||+...
T Consensus       376 ~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         376 TDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             ecCCCcccccCcceEEEEecCc
Confidence            763      4788999998643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=1.1e-08  Score=94.70  Aligned_cols=288  Identities=12%  Similarity=0.118  Sum_probs=179.6

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc---C----CCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA---G----DSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~---~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  126 (430)
                      .-...|  .....|+|+|+.||.++|..+.+...-....+.   .    .-...+|...+. +.-|+...       ..+
T Consensus        17 L~c~~W--Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~-vvTWNe~~-------QKL   86 (1189)
T KOG2041|consen   17 LHCAEW--NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVM-VVTWNENN-------QKL   86 (1189)
T ss_pred             EEEEEE--cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEE-EEEecccc-------ccc
Confidence            444455  555679999999999999988755433222221   0    011224444554 44455444       466


Q ss_pred             EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCC
Q 014154          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (430)
Q Consensus       127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  206 (430)
                      -+...+|-+.||-+-...-    ....+   +-.....|.+++|+.+|..++..-.||.|.+=.++. ..++--....  
T Consensus        87 TtSDt~GlIiVWmlykgsW----~EEMi---NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg--  156 (1189)
T KOG2041|consen   87 TTSDTSGLIIVWMLYKGSW----CEEMI---NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELKG--  156 (1189)
T ss_pred             cccCCCceEEEEeeecccH----HHHHh---hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcch--
Confidence            6667777777776543221    00011   112346788999999999999999999998877753 3333211110  


Q ss_pred             CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc------ceEEEee----cCCCeEEEEe--------cC
Q 014154          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSFDF----RETPIKAVAE--------EP  268 (430)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~----~~~~i~~~~~--------sp  268 (430)
                             .....+.|  ++|...++.+-.+|.+++||.+....      ......+    ....|-.+.|        -|
T Consensus       157 -------~~l~hv~w--s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p  227 (1189)
T KOG2041|consen  157 -------QLLAHVLW--SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP  227 (1189)
T ss_pred             -------heccceee--cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC
Confidence                   22456778  88988888888999999999875221      0111111    1123555555        35


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC---------cEEEEECCCCceeeEE
Q 014154          269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS---------YLRFWDIKTRQLLSAV  339 (430)
Q Consensus       269 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~  339 (430)
                      +...|+++...|.+.|..-.+......+..  .-.+..+.|+++|..|+.+|.|.         .|.+|. .-|..+.++
T Consensus       228 drP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtl  304 (1189)
T KOG2041|consen  228 DRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTL  304 (1189)
T ss_pred             CCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEE
Confidence            778999999999988865443332223332  35788999999999999998653         455554 346666664


Q ss_pred             EeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          340 FLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       340 ~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      .  -. +.-|++++|-..|..++-.-|+.|.+-+..+
T Consensus       305 k--vp-g~~It~lsWEg~gLriA~AvdsfiyfanIRP  338 (1189)
T KOG2041|consen  305 K--VP-GSCITGLSWEGTGLRIAIAVDSFIYFANIRP  338 (1189)
T ss_pred             e--cC-CceeeeeEEcCCceEEEEEecceEEEEeecc
Confidence            3  33 4457999998888776666777776655444

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.13  E-value=7.7e-10  Score=95.36  Aligned_cols=160  Identities=15%  Similarity=0.168  Sum_probs=111.1

Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCee----eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---c
Q 014154          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---Q  238 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~  238 (430)
                      ..+..++++++||.+..+....++++.....    .......          ...+++.|.  .+...+..+..-|   .
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~----------~~~~ai~~~--~~~~sv~v~dkagD~~~  133 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP----------KRPTAISFI--REDTSVLVADKAGDVYS  133 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc----------cCcceeeee--eccceEEEEeecCCcee
Confidence            3445677888999888888877777754332    1111111          223344442  2333333333334   4


Q ss_pred             EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEE
Q 014154          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (430)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s  318 (430)
                      +.+|....+  ....+-+|-+.++.++|+||+++|+++..|..|++-.......+..|.-.|..-|..++.-++. .|++
T Consensus       134 ~di~s~~~~--~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS  210 (390)
T KOG3914|consen  134 FDILSADSG--RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLS  210 (390)
T ss_pred             eeeeccccc--CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeee
Confidence            455554432  2456678999999999999999999999999999987776666666654338999999987654 5899


Q ss_pred             EeCCCcEEEEECCCCceeeEEE
Q 014154          319 CGLDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       319 ~~~dg~i~iwd~~~~~~~~~~~  340 (430)
                      +|.|++|++||+.+|+.+.++.
T Consensus       211 ~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  211 GSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             cCCCCcEEEEecccCCcccccc
Confidence            9999999999999999887653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=2.9e-07  Score=94.75  Aligned_cols=208  Identities=12%  Similarity=0.057  Sum_probs=135.9

Q ss_pred             ceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCC--CCCCCC------CcCCcceeEEEEeecC-CCCEEEEE
Q 014154          164 TIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPP--PKNSLG------IFTPTWFTSAAFLSID-DHRKFVAG  233 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~--~~~~~~------~~~~~~v~~~~~~~~~-~~~~l~s~  233 (430)
                      ....++++++++.|+++.. ++.|+++|+.++.. ..+...  ......      .........++|  +| ++.++++.
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~--dp~~g~LyVad  701 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF--EPVNEKVYIAM  701 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEE--ecCCCeEEEEE
Confidence            3578899998887776654 56799999877543 222211  000000      000123457888  67 56677777


Q ss_pred             eCCCcEEEEECCCCCcceEEEeec---------------CCCeEEEEecCCCCEEE-EEeCCCcEEEEEccCCeEEeeee
Q 014154          234 TNDHQVRLYDTSAQRRPVMSFDFR---------------ETPIKAVAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFI  297 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~~~~~~~~~---------------~~~i~~~~~sp~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~  297 (430)
                      +.++.|++||..++.  +..+.+.               -.....|+++|++..|+ +-+.++.|++||+.++.......
T Consensus       702 ~~~~~I~v~d~~~g~--v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g  779 (1057)
T PLN02919        702 AGQHQIWEYNISDGV--TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG  779 (1057)
T ss_pred             CCCCeEEEEECCCCe--EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence            788999999998753  2222211               12345799999998555 44567899999998765321110


Q ss_pred             C-------------C-------CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec------------cc
Q 014154          298 G-------------K-------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ------------HL  345 (430)
Q Consensus       298 ~-------------~-------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~  345 (430)
                      +             .       .-.....++++++|.++++-..++.|++||..++...... -.+            ..
T Consensus       780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l  858 (1057)
T PLN02919        780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQL  858 (1057)
T ss_pred             cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCcCCCCCccccccc
Confidence            0             0       0113468899999998888889999999999887665432 111            11


Q ss_pred             cceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154          346 NEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       346 ~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                      . ....++++++|++ ++-+.++.|++|+.....
T Consensus       859 ~-~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        859 S-EPAGLALGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             C-CceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence            1 2478899999998 888889999999987643

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.11  E-value=1.4e-07  Score=78.54  Aligned_cols=209  Identities=16%  Similarity=0.144  Sum_probs=133.3

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec--CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  201 (430)
                      |.+++...+..+.|.+....-.   +   .+....+.  ....-..++|+|++.+||.+...|+|++||+.. ..++.+.
T Consensus         9 Gk~lAi~qd~~iEiRsa~Ddf~---s---i~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~   81 (282)
T PF15492_consen    9 GKLLAILQDQCIEIRSAKDDFS---S---IIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP   81 (282)
T ss_pred             CcEEEEEeccEEEEEeccCCch---h---eeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence            6888888888888877542211   0   11222222  224567899999999999999999999999964 4555554


Q ss_pred             CCCCCCCCCcCCcceeEEEEeecCC----CCEEEEEeCCCcEEEEECCC----CCcceEEEee---cCCCeEEEEecCCC
Q 014154          202 PPPKNSLGIFTPTWFTSAAFLSIDD----HRKFVAGTNDHQVRLYDTSA----QRRPVMSFDF---RETPIKAVAEEPDS  270 (430)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~---~~~~i~~~~~sp~~  270 (430)
                      ......  ......|..+.|.....    ...|++-...|.++-|-+..    +-.....+..   +...|.++.|+|..
T Consensus        82 p~~~~~--~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   82 PAMSFP--GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cccccC--CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            422111  11235577777752110    22455667888887766532    1112333333   35689999999998


Q ss_pred             CEEEEEeCC----C-------cEEEEEccCCeEEe----------------------------eeeCCCCCCeEEEEecC
Q 014154          271 FNIYIGNGS----G-------DLASVDIRTGKLLG----------------------------CFIGKCSGSIRSIARHP  311 (430)
Q Consensus       271 ~~l~~~~~d----~-------~i~iwd~~~~~~~~----------------------------~~~~~~~~~v~~i~~~~  311 (430)
                      ++|++|+..    +       -+..|-+-++.+-.                            ...+.....|..|..||
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP  239 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP  239 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence            888887632    1       25556443221100                            00111256799999999


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154          312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  341 (430)
                      ||..|++...+|.|.+|++.+-++.....+
T Consensus       240 dg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  240 DGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            999999999999999999998887776543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=2.7e-09  Score=88.99  Aligned_cols=285  Identities=13%  Similarity=0.125  Sum_probs=165.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC----------cceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS----------NCVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~   84 (430)
                      ..|+||+..|.|.++.......-..++...|+.|...          ..+.++.|-.......++..+.|.+|++|.+..
T Consensus        39 ~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiye  118 (460)
T COG5170          39 LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYE  118 (460)
T ss_pred             ceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeec
Confidence            6789999999999998876422223455567766542          123344442233334566677899999999864


Q ss_pred             Ccccceeec-cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154           85 GDLRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG  163 (430)
Q Consensus        85 ~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~  163 (430)
                      ......-+. ....-..|..+++.+..             ..++--...+. .+....           +-+++.-.|.-
T Consensus       119 knlk~va~nnls~~~~~~~~g~~~s~~-------------~l~lprls~hd-~iiaa~-----------p~rvyaNaH~y  173 (460)
T COG5170         119 KNLKVVAENNLSDSFHSPMGGPLTSTK-------------ELLLPRLSEHD-EIIAAK-----------PCRVYANAHPY  173 (460)
T ss_pred             ccchhhhccccccccccccCCCcCCHH-------------Hhhcccccccc-eEEEec-----------cceecccccee
Confidence            432111111 11101112222332111             01111111111 111111           44556556777


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe---eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT---AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  240 (430)
                      .|.++.++.+...++++ .|-.|.+|+++-....+.   ++.+.-..    ...-|++..|+ +...+.+...+..|.|+
T Consensus       174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmee----LteVItSaeFh-p~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEE----LTEVITSAEFH-PEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             EeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHH----HHHHHhhcccC-HhHcceEEEecCCCcEE
Confidence            89999999888887764 456899999875433322   23221100    01347788884 22345677778899999


Q ss_pred             EEECCCCCc-----ceEE----------EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCC-----
Q 014154          241 LYDTSAQRR-----PVMS----------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGK-----  299 (430)
Q Consensus       241 iwd~~~~~~-----~~~~----------~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~-----  299 (430)
                      +-|++....     .+..          +..-...|..+.|+++|+++++-+. .+|+|||.+.. .++.++.-|     
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence            999984221     0111          1112356888999999999987643 57999999864 356666544     


Q ss_pred             ------CCCCe---EEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          300 ------CSGSI---RSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       300 ------~~~~v---~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                            ....|   ..+.||.+...+++|+..+..-+|-+.
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                  11223   357788888899999988888887644

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.09  E-value=1.5e-09  Score=100.41  Aligned_cols=281  Identities=10%  Similarity=0.056  Sum_probs=176.5

Q ss_pred             CCCCceeEEeecCCeEEEecCC-CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe
Q 014154           62 SQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~  140 (430)
                      .|.|+-+|.++.-|.+ +.|+. .+.+..-+....+       -.+....|......      ..-++....+...+|.+
T Consensus        33 ~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tp-------w~vad~qws~h~a~------~~wiVsts~qkaiiwnl   98 (1081)
T KOG0309|consen   33 NPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITP-------WQVADVQWSPHPAK------PYWIVSTSNQKAIIWNL   98 (1081)
T ss_pred             ccccchhhhhhhcCeE-EEeccCCCCCceeeeccCc-------chhcceecccCCCC------ceeEEecCcchhhhhhh
Confidence            6677778888887754 44443 3444333333222       12222333332221      35566666777788887


Q ss_pred             eecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCee-eEeeCCCCCCCCCCcCCcceeE
Q 014154          141 EVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEK-IWTAKPPPKNSLGIFTPTWFTS  218 (430)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~v~~  218 (430)
                      +.+      .+..|..+...|...|+.+.|+|+ ...+++++.|..+..||+++... +.....-.         .....
T Consensus        99 A~s------s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~---------s~asq  163 (1081)
T KOG0309|consen   99 AKS------SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR---------SAASQ  163 (1081)
T ss_pred             hcC------CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc---------ccCce
Confidence            654      455777777789999999999994 56889999999999999987543 33322211         33456


Q ss_pred             EEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (430)
Q Consensus       219 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  297 (430)
                      ++|. ..++..+++ +....|++||++.+..++..+++|...|..+.|.. ....+++.+.|++|+.||...........
T Consensus       164 Vkwn-yk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~  241 (1081)
T KOG0309|consen  164 VKWN-YKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT  241 (1081)
T ss_pred             eeec-ccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence            6774 345555554 67778999999999999999999999999998864 23578899999999999987543322111


Q ss_pred             CCCCCCeEEEEecCCCCeEEEE--eCCCcEEE---------EECCC-CceeeEEEeeccccceEEeeecccc--------
Q 014154          298 GKCSGSIRSIARHPTLPIIASC--GLDSYLRF---------WDIKT-RQLLSAVFLKQHLNEVVFDSAFADK--------  357 (430)
Q Consensus       298 ~~~~~~v~~i~~~~~~~~l~s~--~~dg~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~--------  357 (430)
                      .....+|..-.+-|-|.-..+-  -.+..+.+         |+..+ .+++++  +.||. ..|...-|-..        
T Consensus       242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~--F~GH~-D~V~eFlWR~r~e~~~d~d  318 (1081)
T KOG0309|consen  242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHT--FVGHD-DVVLEFLWRKRKECDGDYD  318 (1081)
T ss_pred             ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceee--ecCcc-hHHHHHhhhhcccccCCCC
Confidence            1114566666666644321111  11223333         33332 345666  67884 33444444322        


Q ss_pred             ---ccccccCCCCceEecCCCC
Q 014154          358 ---EVANAAADAPMLEIQNGND  376 (430)
Q Consensus       358 ---g~~~~~~~d~~i~~~~~~~  376 (430)
                         -++++=+.|..+++|....
T Consensus       319 ~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  319 SRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccceeEEEeecCCceEeeeccH
Confidence               1238889999999998754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.08  E-value=3.2e-08  Score=87.35  Aligned_cols=167  Identities=19%  Similarity=0.179  Sum_probs=124.9

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-cEEEEECCCCCcce
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPV  251 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~  251 (430)
                      +|++++..+.. ...+.+...+-.+..           .+...|.-..+  ..+++-++.|..|| .+-|||..+++  +
T Consensus       331 ~Gd~ia~VSRG-kaFi~~~~~~~~iqv-----------~~~~~VrY~r~--~~~~e~~vigt~dgD~l~iyd~~~~e--~  394 (668)
T COG4946         331 NGDYIALVSRG-KAFIMRPWDGYSIQV-----------GKKGGVRYRRI--QVDPEGDVIGTNDGDKLGIYDKDGGE--V  394 (668)
T ss_pred             CCcEEEEEecC-cEEEECCCCCeeEEc-----------CCCCceEEEEE--ccCCcceEEeccCCceEEEEecCCce--E
Confidence            46666666543 555555444333322           12245777777  55666889999999 89999999865  5


Q ss_pred             EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC----cEEE
Q 014154          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRF  327 (430)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg----~i~i  327 (430)
                      ..+...-+.|.++..+|+|++++++.....|.++|+.++.....-+.. .+-|+.+.|||+++++|-+--+|    .|++
T Consensus       395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~-~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl  473 (668)
T COG4946         395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSE-YGLITDFDWHPNSRWIAYAFPEGYYTQSIKL  473 (668)
T ss_pred             EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccc-cceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence            667777789999999999999999998899999999999875444444 67899999999999999887665    6999


Q ss_pred             EECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          328 WDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       328 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      +|+.+++....-...+    .-.+.+|.||+++
T Consensus       474 ydm~~~Kiy~vTT~ta----~DfsPaFD~d~ry  502 (668)
T COG4946         474 YDMDGGKIYDVTTPTA----YDFSPAFDPDGRY  502 (668)
T ss_pred             EecCCCeEEEecCCcc----cccCcccCCCCcE
Confidence            9999888766532222    2367899999986

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.05  E-value=8.5e-09  Score=86.08  Aligned_cols=293  Identities=14%  Similarity=0.202  Sum_probs=167.7

Q ss_pred             ceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-----ccceeeccCCCCCC-----CCCCceEEEEEeecCccccccc
Q 014154           53 CVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQ-----PEDDGIVGLHLFKRQREESSSR  122 (430)
Q Consensus        53 ~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~  122 (430)
                      .+.++-+  .-.|.||++|...|.|.++.-....     ...+|+.|.. .|.     .-...|..+.|+.....     
T Consensus        28 ~ItaVef--d~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~-EFDYLkSleieEKin~I~w~~~t~r-----   99 (460)
T COG5170          28 KITAVEF--DETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-EFDYLKSLEIEEKINAIEWFDDTGR-----   99 (460)
T ss_pred             eeeEEEe--ccccceEeecCCCceEEEeecccccccchhhhhhhccccc-chhhhhhccHHHHhhheeeecCCCc-----
Confidence            3666777  4458899999999999999765332     2223333211 011     12235667788876543     


Q ss_pred             CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                       ..++..+.+.++.+|.+.....-..+....-.-+....++++++..               .+++=.+.....+.... 
T Consensus       100 -~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~---------------~l~lprls~hd~iiaa~-  162 (460)
T COG5170         100 -NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK---------------ELLLPRLSEHDEIIAAK-  162 (460)
T ss_pred             -ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHH---------------HhhcccccccceEEEec-
Confidence             3788888889999998754321000000000001111112111100               11111111000000000 


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc--eEEEeecC-----CCeEEEEecCCC-CEEE
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP--VMSFDFRE-----TPIKAVAEEPDS-FNIY  274 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~-----~~i~~~~~sp~~-~~l~  274 (430)
                       +...+.-.|+..+.++.|  ..+...+++ ..|-.|.+|++.-....  +..++.|.     .-|++..|+|.. ..+.
T Consensus       163 -p~rvyaNaH~yhiNSiS~--NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm  238 (460)
T COG5170         163 -PCRVYANAHPYHINSISF--NSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM  238 (460)
T ss_pred             -cceeccccceeEeeeeee--cCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence             000111123466889999  677777776 56889999998753322  23333443     358899999964 5677


Q ss_pred             EEeCCCcEEEEEccCCeE------Eee----------eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC-Cceee
Q 014154          275 IGNGSGDLASVDIRTGKL------LGC----------FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLS  337 (430)
Q Consensus       275 ~~~~d~~i~iwd~~~~~~------~~~----------~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~  337 (430)
                      -.+..|.|++-|+|...+      +..          +.+ ....|..+.|+++|+++++-+. -+|+|||++. ..++.
T Consensus       239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e-ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pik  316 (460)
T COG5170         239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE-IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIK  316 (460)
T ss_pred             EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHH-HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCce
Confidence            778899999999985322      111          111 1457889999999999987754 4799999975 34566


Q ss_pred             EEEeecc----------ccce--EEeeeccccccc-cccCCCCceEecCCCC
Q 014154          338 AVFLKQH----------LNEV--VFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       338 ~~~~~~~----------~~~~--v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ++.+.-.          .+++  -+.+.||.|.+. ++|+..+..-+|-...
T Consensus       317 Ti~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         317 TIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             eechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence            5432111          0111  256889998888 9999999999987543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.03  E-value=2.3e-07  Score=86.04  Aligned_cols=175  Identities=13%  Similarity=0.076  Sum_probs=113.7

Q ss_pred             CceEEEEEcCCCCE-EEEEeCC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE-eCC-
Q 014154          163 GTIAFSKVDISEKF-SLFGGKG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG-TND-  236 (430)
Q Consensus       163 ~~i~~~~~~~~~~~-l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~d-  236 (430)
                      +.+....|+|+++. ++..+.+   ..|+++|+.+++........          .......|  +|||..|+.. +.+ 
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~----------g~~~~~~~--SPDG~~la~~~~~~g  255 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ----------GMLVVSDV--SKDGSKLLLTMAPKG  255 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC----------CcEEeeEE--CCCCCEEEEEEccCC
Confidence            36778999999985 6544433   56999999887664433221          33455678  8999866643 333 


Q ss_pred             -CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          237 -HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       237 -g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                       ..|.++|+.++.  ...+..+........|+|||+.|+..+.. +  .|+++|+.+++........ .   ....|+|+
T Consensus       256 ~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g-~---~~~~~SPD  329 (419)
T PRK04043        256 QPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG-K---NNSSVSTY  329 (419)
T ss_pred             CcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC-C---cCceECCC
Confidence             468888887654  34444443334456899999888766532 2  5888899887764333221 1   12489999


Q ss_pred             CCeEEEEeCC---------CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          313 LPIIASCGLD---------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       313 ~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      |++|+..+..         ..|.+.|+.++.... +..  . . ......|+|||+.
T Consensus       330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~--~-~-~~~~p~~SPDG~~  381 (419)
T PRK04043        330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA--N-G-VNQFPRFSSDGGS  381 (419)
T ss_pred             CCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC--C-C-CcCCeEECCCCCE
Confidence            9988776643         368888988876543 211  1 1 2236899999997

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.03  E-value=2.5e-06  Score=86.45  Aligned_cols=290  Identities=12%  Similarity=0.105  Sum_probs=178.6

Q ss_pred             CcceeeeeecCCCCCceeEEeecCCeEEEe----cCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCc
Q 014154           51 SNCVLAASIDDSQNDPLLAVARKNGLTDIL----NPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSR  124 (430)
Q Consensus        51 ~~~~~~~~~~~~p~g~~l~~g~~dg~i~iw----d~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  124 (430)
                      ...++++.+  -++..-|+.+..+|.|.+.    +..+..  .+..+           +..|.++.|.+.+.        
T Consensus        75 ~~~ivs~~y--l~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-----------d~GI~a~~WSPD~E--------  133 (928)
T PF04762_consen   75 NDKIVSFQY--LADSESLCIALASGDIILVREDPDPDEDEIEIVGSV-----------DSGILAASWSPDEE--------  133 (928)
T ss_pred             CCcEEEEEe--ccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-----------cCcEEEEEECCCcC--------
Confidence            345777777  7777789999999999999    543332  22222           24788888777664        


Q ss_pred             eEEEEccCCeeEEEEeeecCc----cccCC---CcceEE-e--------------------e----------ecCCCceE
Q 014154          125 TLLTCTTKGKASMRSIEVTKV----SAESS---CSTVKS-W--------------------N----------VCASGTIA  166 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~----~~~~~---~~~i~~-~--------------------~----------~~~~~~i~  166 (430)
                      .++..+.++++.+.+-.|.+-    .....   ...|.+ |                    +          +.....-.
T Consensus       134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~  213 (928)
T PF04762_consen  134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRV  213 (928)
T ss_pred             EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCce
Confidence            777777788887776555432    00000   000000 0                    0          00112345


Q ss_pred             EEEEcCCCCEEEEEeC---C---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC---CC
Q 014154          167 FSKVDISEKFSLFGGK---G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DH  237 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~---d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg  237 (430)
                      .++|-.||.++|+.+.   .   ..++||+-+ |..........         +--.+++|  .|.|++||+...   ..
T Consensus       214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---------gLe~~l~W--rPsG~lIA~~q~~~~~~  281 (928)
T PF04762_consen  214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---------GLEGALSW--RPSGNLIASSQRLPDRH  281 (928)
T ss_pred             EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---------CccCCccC--CCCCCEEEEEEEcCCCc
Confidence            6889999999998775   2   468999875 54433322211         22356788  899999998764   34


Q ss_pred             cEEEEECCCCCcceEEEe----ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE--EeeeeCCCCCCeEEEEecC
Q 014154          238 QVRLYDTSAQRRPVMSFD----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~  311 (430)
                      .|.+|.-+..+  ...|.    .....|..+.|++|+..|+....|. |.+|-..+..-  .+++.-.....+..+.|+|
T Consensus       282 ~VvFfErNGLr--hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp  358 (928)
T PF04762_consen  282 DVVFFERNGLR--HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP  358 (928)
T ss_pred             EEEEEecCCcE--eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence            56666654322  22222    2346899999999999999987665 99999887753  3333322134456699999


Q ss_pred             CC-CeEEEEeCCCcEEEEEC----CCCc--------eeeEE--------Eee------------ccccceEEeeeccccc
Q 014154          312 TL-PIIASCGLDSYLRFWDI----KTRQ--------LLSAV--------FLK------------QHLNEVVFDSAFADKE  358 (430)
Q Consensus       312 ~~-~~l~s~~~dg~i~iwd~----~~~~--------~~~~~--------~~~------------~~~~~~v~~~~~s~~g  358 (430)
                      .. ..|...+.+|.+..++.    ..+.        .+..+        .+.            -.....|.+++|++++
T Consensus       359 e~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~  438 (928)
T PF04762_consen  359 EKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSN  438 (928)
T ss_pred             CCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCC
Confidence            65 34666666566655543    1110        11110        000            0124457899999998


Q ss_pred             cc-cccCCCCceEecCCCC
Q 014154          359 VA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       359 ~~-~~~~~d~~i~~~~~~~  376 (430)
                      .. ++...||.+.+|..+.
T Consensus       439 ~~~avl~~d~~l~~~~~~~  457 (928)
T PF04762_consen  439 SRFAVLTSDGSLSIYEWDL  457 (928)
T ss_pred             CeEEEEECCCCEEEEEecC
Confidence            75 8888999999998655

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=99.03  E-value=4e-07  Score=84.68  Aligned_cols=261  Identities=13%  Similarity=0.059  Sum_probs=152.1

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ..+++.++.+|.+..+|..++     +.+=+..... .+...-.-     .+..++++..+|.|..+|..+|+.+..+..
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG-----~~~W~~~~~~-~~~ssP~v-----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~  188 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDG-----EVAWQTKVAG-EALSRPVV-----SDGLVLVHTSNGMLQALNESDGAVKWTVNL  188 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCC-----CCcccccCCC-ceecCCEE-----ECCEEEEECCCCEEEEEEccCCCEeeeecC
Confidence            467888999999999999887     4442222211 11100011     123577788899999999999998877654


Q ss_pred             cCCC-CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC--------c
Q 014154           94 AGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG--------T  164 (430)
Q Consensus        94 ~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~--------~  164 (430)
                      ..+. .......++.    ..          +.++.+..+|.+...+.....          .+|......        .
T Consensus       189 ~~~~~~~~~~~sP~v----~~----------~~v~~~~~~g~v~a~d~~~G~----------~~W~~~~~~~~~~~~~~~  244 (394)
T PRK11138        189 DVPSLTLRGESAPAT----AF----------GGAIVGGDNGRVSAVLMEQGQ----------LIWQQRISQPTGATEIDR  244 (394)
T ss_pred             CCCcccccCCCCCEE----EC----------CEEEEEcCCCEEEEEEccCCh----------hhheeccccCCCccchhc
Confidence            1110 0000011111    10          345555666655554433221          123221100        0


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          165 IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       165 i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ...+..+|  .+..++.++.+|.+..+|..+++.++......           ...+..    .+..|+.++.+|.+..+
T Consensus       245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-----------~~~~~~----~~~~vy~~~~~g~l~al  309 (394)
T PRK11138        245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS-----------VNDFAV----DGGRIYLVDQNDRVYAL  309 (394)
T ss_pred             ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC-----------ccCcEE----ECCEEEEEcCCCeEEEE
Confidence            01111122  35677778889999999999999988754321           111222    45677778899999999


Q ss_pred             ECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEE-EEecCCCCeEEEEe
Q 014154          243 DTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCG  320 (430)
Q Consensus       243 d~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~s~~  320 (430)
                      |..+++. +-.... ......+..+  .+.+|+.++.+|.|+++|..+|+.+...... ...+.+ ..+  .+..|+.++
T Consensus       310 d~~tG~~-~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~-~~~~~s~P~~--~~~~l~v~t  383 (394)
T PRK11138        310 DTRGGVE-LWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD-SSGFLSEPVV--ADDKLLIQA  383 (394)
T ss_pred             ECCCCcE-EEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC-CCcceeCCEE--ECCEEEEEe
Confidence            9988763 222211 1111222222  2457888999999999999999998877643 223322 222  244788889


Q ss_pred             CCCcEEEEEC
Q 014154          321 LDSYLRFWDI  330 (430)
Q Consensus       321 ~dg~i~iwd~  330 (430)
                      .||.|+.++.
T Consensus       384 ~~G~l~~~~~  393 (394)
T PRK11138        384 RDGTVYAITR  393 (394)
T ss_pred             CCceEEEEeC
Confidence            9999988764

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.01  E-value=4.4e-07  Score=77.87  Aligned_cols=228  Identities=11%  Similarity=0.066  Sum_probs=145.7

Q ss_pred             CCeeEEEEeeecCccccCCCcceEEe-eecCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCC--CeeeEeeCCCCC
Q 014154          132 KGKASMRSIEVTKVSAESSCSTVKSW-NVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDK--CEKIWTAKPPPK  205 (430)
Q Consensus       132 ~g~~~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~d~~~--~~~~~~~~~~~~  205 (430)
                      +..+.+|.+.....       .+... .....+..+-|+++|+.+.|+++-.   +|.|..|.++.  |+....-.... 
T Consensus        15 s~gI~v~~ld~~~g-------~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-   86 (346)
T COG2706          15 SQGIYVFNLDTKTG-------ELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-   86 (346)
T ss_pred             CCceEEEEEeCccc-------ccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-
Confidence            45677777763321       11111 1123466788999999999998765   46788887764  44432211111 


Q ss_pred             CCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcc--eEEEeecCCC----------eEEEEecCCCCE
Q 014154          206 NSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRP--VMSFDFRETP----------IKAVAEEPDSFN  272 (430)
Q Consensus       206 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~--~~~~~~~~~~----------i~~~~~sp~~~~  272 (430)
                            .....+.+++  ++++++++++.. .|.|.++-++....+  ...+..|.+.          +.+..+.|++++
T Consensus        87 ------~g~~p~yvsv--d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~  158 (346)
T COG2706          87 ------PGSPPCYVSV--DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY  158 (346)
T ss_pred             ------CCCCCeEEEE--CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence                  0123367788  899999988875 578999998763321  1122334444          888999999999


Q ss_pred             EEEEeC-CCcEEEEEccCCeEEe----eeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCC-ceeeEEE----e
Q 014154          273 IYIGNG-SGDLASVDIRTGKLLG----CFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTR-QLLSAVF----L  341 (430)
Q Consensus       273 l~~~~~-d~~i~iwd~~~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~-~~~~~~~----~  341 (430)
                      |++..- -..|.+|++..|++..    .++.  ....+.|.|+|++++..... -+++|-+|..... ..+..+.    +
T Consensus       159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~--G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl  236 (346)
T COG2706         159 LVVPDLGTDRIFLYDLDDGKLTPADPAEVKP--GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL  236 (346)
T ss_pred             EEEeecCCceEEEEEcccCccccccccccCC--CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence            998763 3569999999776532    2222  56779999999999876655 6899999998863 2222211    1


Q ss_pred             ecc--ccceEEeeeccccccccccCC--CCceEecCCCCC
Q 014154          342 KQH--LNEVVFDSAFADKEVANAAAD--APMLEIQNGNDT  377 (430)
Q Consensus       342 ~~~--~~~~v~~~~~s~~g~~~~~~~--d~~i~~~~~~~~  377 (430)
                      +..  ......++..++||+++.++.  ...|.+|..++.
T Consensus       237 P~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         237 PEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             ccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            111  123356889999999955544  457777776653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.99  E-value=1.2e-06  Score=88.74  Aligned_cols=251  Identities=12%  Similarity=0.073  Sum_probs=151.5

Q ss_pred             CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe
Q 014154          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (430)
Q Consensus       102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~  181 (430)
                      ..+.+.++.++....        .++.+..+|.+.+......+     ....+.+-- .-...|.+++||||+..|+..+
T Consensus        74 ~~~~ivs~~yl~d~~--------~l~~~~~~Gdi~~~~~~~~~-----~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT  139 (928)
T PF04762_consen   74 PNDKIVSFQYLADSE--------SLCIALASGDIILVREDPDP-----DEDEIEIVG-SVDSGILAASWSPDEELLALVT  139 (928)
T ss_pred             CCCcEEEEEeccCCC--------cEEEEECCceEEEEEccCCC-----CCceeEEEE-EEcCcEEEEEECCCcCEEEEEe
Confidence            446788888877654        77888888888887443221     111222222 1246899999999999999999


Q ss_pred             CCCeEEEEECCCCeee------------------------EeeCCCCCCC---------------CCCcCCcceeEEEEe
Q 014154          182 KGVEVNVWDLDKCEKI------------------------WTAKPPPKNS---------------LGIFTPTWFTSAAFL  222 (430)
Q Consensus       182 ~d~~i~~~d~~~~~~~------------------------~~~~~~~~~~---------------~~~~~~~~v~~~~~~  222 (430)
                      .+++|.+.+-. ...+                        ..+++..+..               ..+...+.-..++| 
T Consensus       140 ~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW-  217 (928)
T PF04762_consen  140 GEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW-  217 (928)
T ss_pred             CCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE-
Confidence            99998877532 1111                        1111111100               00001224457788 


Q ss_pred             ecCCCCEEEEEeC---C---CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC---CCcEEEEEccCCeEE
Q 014154          223 SIDDHRKFVAGTN---D---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLL  293 (430)
Q Consensus       223 ~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~  293 (430)
                       -.||.++|+.+.   .   ..++||+-. +. ...+-+.-.+--.+++|-|.|++|++.-.   ...|.+|. ++|-.-
T Consensus       218 -RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrh  293 (928)
T PF04762_consen  218 -RGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRH  293 (928)
T ss_pred             -CCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEe
Confidence             789999998774   3   468899865 22 12222212223357899999999998764   34566776 355443


Q ss_pred             eeeeC---CCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cccCCCCc
Q 014154          294 GCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPM  368 (430)
Q Consensus       294 ~~~~~---~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~  368 (430)
                      ..|.-   .....|..+.|++++..||..-.|. |.+|...+..-.-+..+.-.....+..+.|+|...+  ......+.
T Consensus       294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~  372 (928)
T PF04762_consen  294 GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ  372 (928)
T ss_pred             eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc
Confidence            33332   2256899999999999999987666 999998876533222222121222344788886654  33444455


Q ss_pred             eEecC
Q 014154          369 LEIQN  373 (430)
Q Consensus       369 i~~~~  373 (430)
                      +..++
T Consensus       373 ~~~~~  377 (928)
T PF04762_consen  373 YEIYD  377 (928)
T ss_pred             EEEEE
Confidence            54443

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.99  E-value=9.2e-07  Score=83.02  Aligned_cols=246  Identities=14%  Similarity=0.108  Sum_probs=154.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCC--------CceeEEeecCCeEEEecCCCCc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN--------DPLLAVARKNGLTDILNPLNGD   86 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------g~~l~~g~~dg~i~iwd~~~~~   86 (430)
                      .-|++-+....|.|-|...-     +.++.+..|...|..+.+.....|.        .-+||+++..|.|.+||...+.
T Consensus        26 ~GLiAygshslV~VVDs~s~-----q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s  100 (1062)
T KOG1912|consen   26 SGLIAYGSHSLVSVVDSRSL-----QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS  100 (1062)
T ss_pred             cceEEEecCceEEEEehhhh-----hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh
Confidence            34566666678999998886     8888888899888888776543322        2367888999999999998877


Q ss_pred             ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc-e
Q 014154           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT-I  165 (430)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~-i  165 (430)
                      .+..+..        +.+++..+.|+....    ..+..+++-.....+.+|+...+.          ++|+..-... .
T Consensus       101 ~~~~l~~--------~~~~~qdl~W~~~rd----~Srd~LlaIh~ss~lvLwntdtG~----------k~Wk~~ys~~iL  158 (1062)
T KOG1912|consen  101 VINWLSH--------SNDSVQDLCWVPARD----DSRDVLLAIHGSSTLVLWNTDTGE----------KFWKYDYSHEIL  158 (1062)
T ss_pred             hhhhhcC--------CCcchhheeeeeccC----cchheeEEecCCcEEEEEEccCCc----------eeeccccCCcce
Confidence            6666543        445777788776654    122356666677788889754332          4676544444 4


Q ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEECCC-------CeeeEeeCCCCC-----------CCCCCc--CCcce-eEEEEee
Q 014154          166 AFSKVDI-SEKFSLFGGKGVEVNVWDLDK-------CEKIWTAKPPPK-----------NSLGIF--TPTWF-TSAAFLS  223 (430)
Q Consensus       166 ~~~~~~~-~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~-----------~~~~~~--~~~~v-~~~~~~~  223 (430)
                      .|+.++| +.+.+..-+..|.+.+-+.-.       ++..+.-..+..           ......  ....+ .++.|..
T Consensus       159 s~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf  238 (1062)
T KOG1912|consen  159 SCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF  238 (1062)
T ss_pred             eeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc
Confidence            5688888 666777777777777766521       222111111110           000000  00111 1233323


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC--CEEEEEeCCCcEEEEEcc
Q 014154          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIR  288 (430)
Q Consensus       224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~d~~i~iwd~~  288 (430)
                      +|.-+.++-......+.++|++-. +++.......+.+.-+.+-|++  ..|++...||.+.+|-.+
T Consensus       239 ~p~~rn~lfi~~prellv~dle~~-~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk  304 (1062)
T KOG1912|consen  239 SPHWRNILFITFPRELLVFDLEYE-CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK  304 (1062)
T ss_pred             ChhhhceEEEEeccceEEEcchhh-ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence            565555555567889999999863 4566666555556666666654  678888899999888543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.96  E-value=2.1e-08  Score=81.76  Aligned_cols=75  Identities=21%  Similarity=0.233  Sum_probs=63.0

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCC-CCEEEEEeCCCcEEEEEccC
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRT  289 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~  289 (430)
                      ..|++++-+| ...+++++|+.||.+-+||.++...|...+..|+.+|..+-|+|. +..|+++++||.+..||..+
T Consensus       180 ~~v~~l~~hp-~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHP-AQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCc-ccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            4477777742 234577888999999999999887778888999999999999984 58999999999999999864

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.96  E-value=1.8e-06  Score=72.03  Aligned_cols=255  Identities=16%  Similarity=0.118  Sum_probs=137.1

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      +..++++.-+|..|.|-..+.+-..+....+.-......  --.++|  +||+.+||.+...|+|+++|+. |..+..+.
T Consensus         7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQ--WRkl~W--SpD~tlLa~a~S~G~i~vfdl~-g~~lf~I~   81 (282)
T PF15492_consen    7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQ--WRKLAW--SPDCTLLAYAESTGTIRVFDLM-GSELFVIP   81 (282)
T ss_pred             CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCch--heEEEE--CCCCcEEEEEcCCCeEEEEecc-cceeEEcC
Confidence            346777777888888877766422221111222221111  234556  7899999999999999999985 44444444


Q ss_pred             ccCCCCCC-CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           93 NAGDSGAQ-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        93 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      .-..  +. --...|.++.+......  ......+++-...|.++-+.+..... .+-......-+.......|.++.++
T Consensus        82 p~~~--~~~d~~~Aiagl~Fl~~~~s--~~ws~ELlvi~Y~G~L~Sy~vs~gt~-q~y~e~hsfsf~~~yp~Gi~~~vy~  156 (282)
T PF15492_consen   82 PAMS--FPGDLSDAIAGLIFLEYKKS--AQWSYELLVINYRGQLRSYLVSVGTN-QGYQENHSFSFSSHYPHGINSAVYH  156 (282)
T ss_pred             cccc--cCCccccceeeeEeeccccc--cccceeEEEEeccceeeeEEEEcccC-CcceeeEEEEecccCCCceeEEEEc
Confidence            3110  11 12356777777665431  12224667777777777777643211 0000111111222234679999999


Q ss_pred             CCCCEEEEEeCCCeEE-EEEC-CCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC------cEEEEE
Q 014154          172 ISEKFSLFGGKGVEVN-VWDL-DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRLYD  243 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~-~~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~iwd  243 (430)
                      |..++|++|+....=. .... ..|-..+++-..                    .|... .++...|+      +..+|.
T Consensus       157 p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~--------------------~Pyyk-~v~~~~~~~~~~~~~~~~~~  215 (282)
T PF15492_consen  157 PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD--------------------SPYYK-QVTSSEDDITASSKRRGLLR  215 (282)
T ss_pred             CCCCEEEEeccCCCCCccccccccCceEEEEcCC--------------------CCcEE-EccccCccccccccccceee
Confidence            9999988887543200 0000 001111111110                    11111 11111111      112333


Q ss_pred             CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC
Q 014154          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (430)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  299 (430)
                      +-+.+ ...........|..|..||||.+|++...+|.|.+|++.+-++...+..+
T Consensus       216 ~~~~~-~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  216 IPSFK-FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             cccee-eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            22211 01111223468999999999999999999999999999988877766543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.95  E-value=1.7e-06  Score=74.48  Aligned_cols=224  Identities=17%  Similarity=0.215  Sum_probs=136.9

Q ss_pred             CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcc
Q 014154           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCST  153 (430)
Q Consensus        74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~  153 (430)
                      +|+|..||..+|+.+.....- .     .........+.. .        +.+++++.++.+..++.....         
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~-~-----~~~~~~~~~~~~-~--------~~v~~~~~~~~l~~~d~~tG~---------   57 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG-P-----GIGGPVATAVPD-G--------GRVYVASGDGNLYALDAKTGK---------   57 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS-S-----SCSSEEETEEEE-T--------TEEEEEETTSEEEEEETTTSE---------
T ss_pred             CCEEEEEECCCCCEEEEEECC-C-----CCCCccceEEEe-C--------CEEEEEcCCCEEEEEECCCCC---------
Confidence            688999999999988776431 1     011221111111 1        467777777777777753221         


Q ss_pred             eEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee-CCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (430)
Q Consensus       154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  232 (430)
                       .+|.......+.... ...+..+++++.++.|+.+|..+|+.++.. .... .....   .......+    .+..++.
T Consensus        58 -~~W~~~~~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-~~~~~---~~~~~~~~----~~~~~~~  127 (238)
T PF13360_consen   58 -VLWRFDLPGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-PPAGV---RSSSSPAV----DGDRLYV  127 (238)
T ss_dssp             -EEEEEECSSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-CTCST---B--SEEEE----ETTEEEE
T ss_pred             -EEEEeecccccccee-eecccccccccceeeeEecccCCcceeeeeccccc-ccccc---ccccCceE----ecCEEEE
Confidence             245544333322211 224667777788889999999999999984 3321 11100   11223333    4778888


Q ss_pred             EeCCCcEEEEECCCCCcceEEEeecCCC----------e-EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCC
Q 014154          233 GTNDHQVRLYDTSAQRRPVMSFDFRETP----------I-KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS  301 (430)
Q Consensus       233 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------i-~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  301 (430)
                      +..++.|..+|+.+++. +.........          + ..+.+. ++ .++.++.++.+..+|+.+++.+.....   
T Consensus       128 ~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~---  201 (238)
T PF13360_consen  128 GTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKPI---  201 (238)
T ss_dssp             EETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEECS---
T ss_pred             EeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEecC---
Confidence            88899999999999764 5555543322          1 223333 44 777777788644449999997654432   


Q ss_pred             CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      ..+..+ ...++..|+.++.++.|..||+++|+.+.+
T Consensus       202 ~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  202 SGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             S-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             CCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            223332 346777888888999999999999998764

...

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.94  E-value=2.3e-08  Score=89.88  Aligned_cols=271  Identities=10%  Similarity=0.081  Sum_probs=168.4

Q ss_pred             cceeeecCCCceEEEEccCCC--CCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEH--GGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      ..+++++.|.+|++|.++...  .+...+..++..|..++..+.|--+.    ++  .++.||.|.+||.--++++..+.
T Consensus       748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l----r~--i~ScD~giHlWDPFigr~Laq~~  821 (1034)
T KOG4190|consen  748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL----RS--IASCDGGIHLWDPFIGRLLAQME  821 (1034)
T ss_pred             cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc----ce--eeeccCcceeecccccchhHhhh
Confidence            568999999999999987632  24445677888999997777765522    23  45678999999998887766443


Q ss_pred             ccCCCCCCCCCCceEEEEEeec-CcccccccCceEEE-EccCCeeEEEEeeecCccccCCCcceEEeeecC----CCceE
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKR-QREESSSRSRTLLT-CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIA  166 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~----~~~i~  166 (430)
                      .      .+..+....+...+. +.       ..+++ |+...++++++.....        .+.-|.+..    +..+.
T Consensus       822 d------apk~~a~~~ikcl~nv~~-------~iliAgcsaeSTVKl~DaRsce--------~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  822 D------APKEGAGGNIKCLENVDR-------HILIAGCSAESTVKLFDARSCE--------WTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             c------CcccCCCceeEecccCcc-------hheeeeccchhhheeeeccccc--------ceeeEEeccCCCCchhee
Confidence            2      122223333343333 22       23444 3666778887754332        344454432    35688


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE-EECC
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDTS  245 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i-wd~~  245 (430)
                      +++..+.|+.++.+-.+|.|.+.|.++|..+.......-.         ...++   .|..+.|+....|.++.+ |...
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd---------llqla---apsdq~L~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECD---------LLQLA---APSDQALAQSALDHSLAVNWHAL  948 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccch---------hhhhc---CchhHHHHhhcccceeEeeehhc
Confidence            9999999999999999999999999999988766554311         22222   356677888888888888 8766


Q ss_pred             CCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC-C---eEEeeeeC-CCCCCeEEEEecCCCCeEEEEe
Q 014154          246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-G---KLLGCFIG-KCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~---~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      .+.. ....+....+..-+  ..-|.-|++....+.+.+|--.. .   .-+..++. ...+..++++--|-+.-++.|.
T Consensus       949 dgim-h~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGn 1025 (1034)
T KOG4190|consen  949 DGIM-HLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGN 1025 (1034)
T ss_pred             CCee-eeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccC
Confidence            5332 22222222221111  12355666666666777773211 1   11112211 1145677888888776677788


Q ss_pred             CCCcEEE
Q 014154          321 LDSYLRF  327 (430)
Q Consensus       321 ~dg~i~i  327 (430)
                      ..|.|.+
T Consensus      1026 e~G~IaL 1032 (1034)
T KOG4190|consen 1026 EHGAIAL 1032 (1034)
T ss_pred             CCCceee
Confidence            8888765

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=6.5e-09  Score=93.30  Aligned_cols=199  Identities=14%  Similarity=0.085  Sum_probs=134.5

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  232 (430)
                      .|...|..++--.+.+.+++++.|.+|++|.++.       ..+.+++..|.         .+|..+.|  -.+-++++ 
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk---------k~i~~igf--L~~lr~i~-  800 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK---------KPIHDIGF--LADLRSIA-  800 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhcc---------Ccccceee--eeccceee-
Confidence            4556677776666889999999999999999863       33566777665         67888888  35555666 


Q ss_pred             EeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecC--CCCEEEEE-eCCCcEEEEEccCCeEEeeeeCC----CCCCe
Q 014154          233 GTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEP--DSFNIYIG-NGSGDLASVDIRTGKLLGCFIGK----CSGSI  304 (430)
Q Consensus       233 ~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp--~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~----~~~~v  304 (430)
                       +.||-|++||.--++...+.... ..+.+..+..-|  +...+++| +...+|+++|.+.+.-..+++.-    ..+.+
T Consensus       801 -ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~  879 (1034)
T KOG4190|consen  801 -SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALT  879 (1034)
T ss_pred             -eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhe
Confidence             45899999998765532212211 122333333323  34455555 67789999999998876666521    14678


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEe-cCCC
Q 014154          305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEI-QNGN  375 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~-~~~~  375 (430)
                      .+++..+.|++++.+-.+|.|.+.|.++|+.+..+.  .- ..-...++- |..+. +....|-++.+ |...
T Consensus       880 R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr--pm-ecdllqlaa-psdq~L~~saldHslaVnWhal  948 (1034)
T KOG4190|consen  880 RAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR--PM-ECDLLQLAA-PSDQALAQSALDHSLAVNWHAL  948 (1034)
T ss_pred             eEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC--cc-cchhhhhcC-chhHHHHhhcccceeEeeehhc
Confidence            999999999999999999999999999999887642  11 111223332 33333 66666777776 6543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.86  E-value=3.1e-08  Score=80.73  Aligned_cols=150  Identities=15%  Similarity=0.206  Sum_probs=94.8

Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-----CCCcEEEEECC
Q 014154          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-----NDHQVRLYDTS  245 (430)
Q Consensus       171 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-----~dg~i~iwd~~  245 (430)
                      +-.++.++++..||.+.+++.+....+..    +.....+   + -.+..+  ...++.+.++.     .-+..+.|+++
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~----~i~~~~~---~-~as~~~--~~~~~~i~s~~~g~~n~~d~~~a~~~~  167 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMS----RIPSIHS---G-SASRKI--CRHGNSILSGGCGNWNAQDNFYANTLD  167 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhh----hcccccc---c-ccccce--eecccEEecCCcceEeeccceeeeccc
Confidence            33567889999999999999865211110    1000000   0 011111  12233343322     23356677776


Q ss_pred             CCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCC-CCeEEEEeCC
Q 014154          246 AQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPT-LPIIASCGLD  322 (430)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~d  322 (430)
                      ..+....... ....|.+++-+|.. +.+++|+.||.+.+||.++... ...+..| ..+|+.+.|+|. +..|+++++|
T Consensus       168 p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ah-k~~i~eV~FHpk~p~~Lft~sed  245 (319)
T KOG4714|consen  168 PIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAH-KAEIWEVHFHPKNPEHLFTCSED  245 (319)
T ss_pred             cccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHh-hhhhhheeccCCCchheeEecCC
Confidence            5332221112 12358999999865 5667888999999999998754 3445666 999999999994 5789999999


Q ss_pred             CcEEEEECCC
Q 014154          323 SYLRFWDIKT  332 (430)
Q Consensus       323 g~i~iwd~~~  332 (430)
                      |.+.-||..+
T Consensus       246 Gslw~wdas~  255 (319)
T KOG4714|consen  246 GSLWHWDAST  255 (319)
T ss_pred             CcEEEEcCCC
Confidence            9999999763

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.85  E-value=5.4e-08  Score=84.21  Aligned_cols=150  Identities=13%  Similarity=0.177  Sum_probs=108.2

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCc---ceEEEeecCCCeEEEEecCCCCEEEEEeCCCc---EEEEEccCCeEEeeee
Q 014154          224 IDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD---LASVDIRTGKLLGCFI  297 (430)
Q Consensus       224 ~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~---i~iwd~~~~~~~~~~~  297 (430)
                      ++.+++|+++..+....++++....+   ++...... ..-+++.|..+...+..+..-|.   +.+|....+.+ ..+.
T Consensus        71 s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~-~~~l  148 (390)
T KOG3914|consen   71 SDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC-EPIL  148 (390)
T ss_pred             CCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecccccCc-chhh
Confidence            77888999998888887888775332   12222221 23344555445555555544444   44454444443 3455


Q ss_pred             CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154          298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       298 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                      +| -..++.++|+||+++|+++..|..|||-.+..-..+..+ +-|| ...|..++.-++..+++++.|++|++|++...
T Consensus       149 Gh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-clGH-~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sg  225 (390)
T KOG3914|consen  149 GH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-CLGH-KEFVSTISLTDNYLLLSGSGDKTLRLWDITSG  225 (390)
T ss_pred             hh-hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-cccc-HhheeeeeeccCceeeecCCCCcEEEEecccC
Confidence            77 889999999999999999999999999988877777776 5577 66789999998888899999999999998765


Q ss_pred             c
Q 014154          378 Q  378 (430)
Q Consensus       378 ~  378 (430)
                      .
T Consensus       226 k  226 (390)
T KOG3914|consen  226 K  226 (390)
T ss_pred             C
Confidence            4

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.82  E-value=5.9e-08  Score=90.23  Aligned_cols=243  Identities=16%  Similarity=0.167  Sum_probs=157.2

Q ss_pred             eecCCCCCceeEEeecCCeEEEecCCCCc-ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeE
Q 014154           58 SIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKAS  136 (430)
Q Consensus        58 ~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  136 (430)
                      .|..+|--++-++......-.+|++.... ..-.|-.|      +|...++.+.+.+...       ..+++++.+-.+.
T Consensus        74 qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lh------ghsraitd~n~~~q~p-------dVlatcsvdt~vh  140 (1081)
T KOG0309|consen   74 QWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLH------GHSRAITDINFNPQHP-------DVLATCSVDTYVH  140 (1081)
T ss_pred             ecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEe------cCccceeccccCCCCC-------cceeeccccccce
Confidence            33337766777777777888899875321 11122211      3456788777766655       6889999999999


Q ss_pred             EEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEeeCCCCCCCCCCcCCcc
Q 014154          137 MRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTW  215 (430)
Q Consensus       137 v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~  215 (430)
                      .|++...       +.++..|..-+ .....++|+-....+++.+..+.|.+||++.+ .++..++.+.         ..
T Consensus       141 ~wd~rSp-------~~p~ys~~~w~-s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v---------s~  203 (1081)
T KOG0309|consen  141 AWDMRSP-------HRPFYSTSSWR-SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV---------SS  203 (1081)
T ss_pred             eeeccCC-------Ccceeeeeccc-ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc---------ee
Confidence            9998643       34677766443 34566888875555556677778999999865 4455566543         66


Q ss_pred             eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC--CEEEEEeCCCcEEEEEcc-----
Q 014154          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS--FNIYIGNGSGDLASVDIR-----  288 (430)
Q Consensus       216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~--~~l~~~~~d~~i~iwd~~-----  288 (430)
                      |+.++|. ......+.+++.|++|+.||.......-........+|.--.+-|=|  .++.---.++.+.+++-+     
T Consensus       204 vn~~~fn-r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e  282 (1081)
T KOG0309|consen  204 VNSIDFN-RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE  282 (1081)
T ss_pred             eehHHHh-hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhh
Confidence            7888884 33456788999999999999875332112222233566655666633  233222223344444332     


Q ss_pred             -----CCeEEeeeeCCCCCCeEEEEecCCC----------CeEEEEeCCCcEEEEECCC
Q 014154          289 -----TGKLLGCFIGKCSGSIRSIARHPTL----------PIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       289 -----~~~~~~~~~~~~~~~v~~i~~~~~~----------~~l~s~~~dg~i~iwd~~~  332 (430)
                           ..++++.|.|| ...|..+.|-..+          -.|+|-+.|..+++|-+.+
T Consensus       283 ~n~~~~~~pVh~F~GH-~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  283 WNVFDLNTPVHTFVGH-DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hccccCCcceeeecCc-chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                 24678999998 7777776664322          2699999999999998864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.82  E-value=1.8e-08  Score=59.16  Aligned_cols=39  Identities=44%  Similarity=0.624  Sum_probs=36.6

Q ss_pred             CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       290 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd  329 (430)
                      ++++.++.+| ...|++++|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h-~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGH-SSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESS-SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCC-CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3678899998 99999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.82  E-value=1e-05  Score=77.20  Aligned_cols=301  Identities=16%  Similarity=0.156  Sum_probs=164.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCC----Ccceee--eeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS----SNCVLA--ASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      .+++.++.+|.|.-.|+.++     +.+-.+.....    ...++.  ....   ++..++.++.+|.|.-+|..+|+.+
T Consensus        62 g~vy~~~~~g~l~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~g~~~~---~~~~V~v~~~~g~v~AlD~~TG~~~  133 (488)
T cd00216          62 GDMYFTTSHSALFALDAATG-----KVLWRYDPKLPADRGCCDVVNRGVAYW---DPRKVFFGTFDGRLVALDAETGKQV  133 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCC-----hhhceeCCCCCccccccccccCCcEEc---cCCeEEEecCCCeEEEEECCCCCEe
Confidence            67888888999999999887     44422221111    000010  1110   1246888889999999999999988


Q ss_pred             ceeeccCCC--CCCCCCCceEEEEEeecCcccccccCceEEEEcc---------CCeeEEEEeeecCccccCCCcceEEe
Q 014154           89 VAISNAGDS--GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---------KGKASMRSIEVTKVSAESSCSTVKSW  157 (430)
Q Consensus        89 ~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~v~~~~~~~~~~~~~~~~i~~~  157 (430)
                      ..+......  .+.....+.    +..          +.++.++.         ++.+...+.....          .+|
T Consensus       134 W~~~~~~~~~~~~~i~ssP~----v~~----------~~v~vg~~~~~~~~~~~~g~v~alD~~TG~----------~~W  189 (488)
T cd00216         134 WKFGNNDQVPPGYTMTGAPT----IVK----------KLVIIGSSGAEFFACGVRGALRAYDVETGK----------LLW  189 (488)
T ss_pred             eeecCCCCcCcceEecCCCE----EEC----------CEEEEeccccccccCCCCcEEEEEECCCCc----------eee
Confidence            776542110  000000011    111          23333332         2222222221111          122


Q ss_pred             eecC---------------------CCce-EEEEEcCCCCEEEEEeCCC------------------eEEEEECCCCeee
Q 014154          158 NVCA---------------------SGTI-AFSKVDISEKFSLFGGKGV------------------EVNVWDLDKCEKI  197 (430)
Q Consensus       158 ~~~~---------------------~~~i-~~~~~~~~~~~l~~~~~d~------------------~i~~~d~~~~~~~  197 (430)
                      ....                     ...+ ...++++.+..++.++.++                  .|..+|..+++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            2211                     1111 1345555677888887665                  7999999999999


Q ss_pred             EeeCCCCCCCCC--CcCCcceeEEEEeecCCCC---EEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCE
Q 014154          198 WTAKPPPKNSLG--IFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN  272 (430)
Q Consensus       198 ~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~  272 (430)
                      +.++........  ......+..+.   .-++.   .++.++.+|.+..+|..+++. +-.....   ...++.+|  ..
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~---~~~g~~~~~V~~g~~~G~l~ald~~tG~~-~W~~~~~---~~~~~~~~--~~  340 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIK---PKDGKPVPAIVHAPKNGFFYVLDRTTGKL-ISARPEV---EQPMAYDP--GL  340 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEecc---ccCCCeeEEEEEECCCceEEEEECCCCcE-eeEeEee---ccccccCC--ce
Confidence            987643211100  00000111111   01232   577888999999999999874 3333211   11233444  23


Q ss_pred             EEEE------------------eCCCcEEEEEccCCeEEeeeeCCC-C------CCe--EEEEecCCCCeEEEEeCCCcE
Q 014154          273 IYIG------------------NGSGDLASVDIRTGKLLGCFIGKC-S------GSI--RSIARHPTLPIIASCGLDSYL  325 (430)
Q Consensus       273 l~~~------------------~~d~~i~iwd~~~~~~~~~~~~~~-~------~~v--~~i~~~~~~~~l~s~~~dg~i  325 (430)
                      ++.+                  ..+|.|.-.|+.+|+.+.+..... .      .+.  ..+..  .+..|+.++.||.|
T Consensus       341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l  418 (488)
T cd00216         341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYF  418 (488)
T ss_pred             EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeE
Confidence            4332                  235789999999999887765420 0      111  11222  45678888999999


Q ss_pred             EEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      +.+|.++|+.+.+..+.+..  ...-+.|..+|+.
T Consensus       419 ~ald~~tG~~lW~~~~~~~~--~a~P~~~~~~g~~  451 (488)
T cd00216         419 RAFDATTGKELWKFRTPSGI--QATPMTYEVNGKQ  451 (488)
T ss_pred             EEEECCCCceeeEEECCCCc--eEcCEEEEeCCEE
Confidence            99999999999986654332  1123345556766

The alignment model contains an 8-bladed beta-propeller.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.81  E-value=5.4e-06  Score=71.42  Aligned_cols=184  Identities=16%  Similarity=0.158  Sum_probs=117.7

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  252 (430)
                      .+..+++++.++.|+.||..+|+.+++......          +.....   ..+..+++++.++.|+.+|..+++. +.
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~----------~~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~-~W  100 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP----------ISGAPV---VDGGRVYVGTSDGSLYALDAKTGKV-LW  100 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC----------GGSGEE---EETTEEEEEETTSEEEEEETTTSCE-EE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc----------ccceee---ecccccccccceeeeEecccCCcce-ee
Confidence            567788888999999999999999988776321          111111   2455677777888999999998775 44


Q ss_pred             E-EeecC--C-CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC----------e-EEEEecCCCCeEE
Q 014154          253 S-FDFRE--T-PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS----------I-RSIARHPTLPIIA  317 (430)
Q Consensus       253 ~-~~~~~--~-~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----------v-~~i~~~~~~~~l~  317 (430)
                      . .....  . ..........+..++++..++.|..+|+++|+.+..+... ...          + ..+.+ .++ .++
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~-~v~  177 (238)
T PF13360_consen  101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSFSDINGSPVI-SDG-RVY  177 (238)
T ss_dssp             EEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEETTEEEEEEC-CTT-EEE
T ss_pred             eeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeeecccccceEE-ECC-EEE
Confidence            4 23221  1 1122223334778899988999999999999998888764 322          1 22333 344 777


Q ss_pred             EEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154          318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       318 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~  378 (430)
                      .++.++.+.-+|+.+++.+..  ..  .... ..+....++.+++++.++.+..||....+
T Consensus       178 ~~~~~g~~~~~d~~tg~~~w~--~~--~~~~-~~~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  178 VSSGDGRVVAVDLATGEKLWS--KP--ISGI-YSLPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             EECCTSSEEEEETTTTEEEEE--EC--SS-E-CECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             EEcCCCeEEEEECCCCCEEEE--ec--CCCc-cCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            777788644449999997653  22  1221 22122233444555589999999987643

...

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.81  E-value=2.1e-08  Score=84.96  Aligned_cols=131  Identities=16%  Similarity=0.126  Sum_probs=99.1

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      ...|.++.|...+++++.|+.+|.|..+|++..     .++.......+.|.+.|+++... .-++++|++.+.+|.|.+
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r-----nqG~~~~a~rlyh~Ssvtslq~L-q~s~q~LmaS~M~gkikL  325 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR-----NQGNGWCAQRLYHDSSVTSLQIL-QFSQQKLMASDMTGKIKL  325 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeec-----ccCCCcceEEEEcCcchhhhhhh-ccccceEeeccCcCceeE
Confidence            456888889888999999999999999999864     12222223344566778888774 336788999999999999


Q ss_pred             EECCCCCc--ceEEEeecCCCeEE--EEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC
Q 014154          242 YDTSAQRR--PVMSFDFRETPIKA--VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (430)
Q Consensus       242 wd~~~~~~--~~~~~~~~~~~i~~--~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  298 (430)
                      ||++.-++  -+....+|-..-.-  +-+.+....+++++.|...+||.++.++++.+++-
T Consensus       326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             eeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            99996332  37778888433222  23456678899999999999999999999888764

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=1.2e-07  Score=83.33  Aligned_cols=251  Identities=12%  Similarity=0.040  Sum_probs=161.6

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec-CCeEEEecCCCCcccceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~   93 (430)
                      .-.++++.||.++.|....-  .....+..+..|...+..++.+.    +|-++++++. |..++++|+.+...+..++.
T Consensus        21 ~fiiqASlDGh~KFWkKs~i--sGvEfVKhFraHL~~I~sl~~S~----dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL   94 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRI--SGVEFVKHFRAHLGVILSLAVSY----DGWLFRSVEDPDHSVKVFDVENFDMINMIKL   94 (558)
T ss_pred             heEEeeecchhhhhcCCCCc--cceeehhhhHHHHHHHHhhhccc----cceeEeeccCcccceeEEEeeccchhhhccc
Confidence            44789999999999987651  22346667777888877677766    4557888666 99999999988776655554


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEE-EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      ...          ....-|.....+   ....++ ....++.+.|++-..       ....+..+.--|..+|.++.+++
T Consensus        95 ~~l----------Pg~a~wv~skGd---~~s~IAVs~~~sg~i~VvD~~~-------d~~q~~~fkklH~sPV~~i~y~q  154 (558)
T KOG0882|consen   95 VDL----------PGFAEWVTSKGD---KISLIAVSLFKSGKIFVVDGFG-------DFCQDGYFKKLHFSPVKKIRYNQ  154 (558)
T ss_pred             ccC----------CCceEEecCCCC---eeeeEEeecccCCCcEEECCcC-------CcCccceecccccCceEEEEeec
Confidence            211          111122222200   001222 222344555554221       11144555556778999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCC------CeeeEeeCCCCCCCCCC-cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154          173 SEKFSLFGGKGVEVNVWDLDK------CEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~------~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  245 (430)
                      .+..+++....|.|.-|..+.      .+..+.++... ..+.. .......++.|  +|++..+.+-+.|..|+++++.
T Consensus       155 a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eT-dLy~f~K~Kt~pts~Ef--sp~g~qistl~~DrkVR~F~~K  231 (558)
T KOG0882|consen  155 AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHET-DLYGFPKAKTEPTSFEF--SPDGAQISTLNPDRKVRGFVFK  231 (558)
T ss_pred             cccceeeccccceeEeecCCCcccCccccccccccccc-hhhcccccccCccceEE--ccccCcccccCcccEEEEEEec
Confidence            999999999999999999873      22223332221 11111 11245678888  8999999999999999999998


Q ss_pred             CCCcceEEE--------------------------------eecC-CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154          246 AQRRPVMSF--------------------------------DFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (430)
Q Consensus       246 ~~~~~~~~~--------------------------------~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  292 (430)
                      +++. ++.+                                ..|. ..-+.+.|...+++|+-|+-=| |++.++.++.+
T Consensus       232 tGkl-vqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v  309 (558)
T KOG0882|consen  232 TGKL-VQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTV  309 (558)
T ss_pred             cchh-hhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeE
Confidence            8652 2211                                1121 1234567888899999887766 89999999887


Q ss_pred             Eeee
Q 014154          293 LGCF  296 (430)
Q Consensus       293 ~~~~  296 (430)
                      ++.+
T Consensus       310 ~ri~  313 (558)
T KOG0882|consen  310 VRIL  313 (558)
T ss_pred             EEEe
Confidence            7655

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.80  E-value=4.7e-09  Score=99.24  Aligned_cols=260  Identities=17%  Similarity=0.160  Sum_probs=156.8

Q ss_pred             eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (430)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  122 (430)
                      ..|..|...-++.+|+-    +.++|++|+..|.|+++++.+|........|        ...++.+.-....       
T Consensus      1095 ~~frd~~~~fTc~afs~----~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH--------~SavT~vePs~dg------- 1155 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSG----GTNHLAVGSHAGEIKIFNVSSGSMEESVNCH--------QSAVTLVEPSVDG------- 1155 (1516)
T ss_pred             hhhhccccceeeEEeec----CCceEEeeeccceEEEEEccCcccccccccc--------ccccccccccCCc-------
Confidence            34555666666666665    3458999999999999999999877776654        3344332221111       


Q ss_pred             CceEEEEcc-CC-eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154          123 SRTLLTCTT-KG-KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (430)
Q Consensus       123 ~~~~~~~~~-~g-~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  200 (430)
                       ...++.+. .. ...+|.+..       ..+..+.|+     .-.++.|+.....-+.|+......+||+.++..+.++
T Consensus      1156 -s~~Ltsss~S~PlsaLW~~~s-------~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1156 -STQLTSSSSSSPLSALWDASS-------TGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred             -ceeeeeccccCchHHHhcccc-------ccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence             12222211 11 234444321       112222222     3456778766555555666568999999998877664


Q ss_pred             CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (430)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~  280 (430)
                      -......     .-.-++..|  +|+..+++   .||.  +||.+..+ .++.|...+..+.. .|+|.|..++.-+   
T Consensus      1223 lt~~~~~-----~y~~n~a~F--sP~D~LIl---ndGv--LWDvR~~~-aIh~FD~ft~~~~G-~FHP~g~eVIINS--- 1285 (1516)
T KOG1832|consen 1223 LTDTVTS-----SYSNNLAHF--SPCDTLIL---NDGV--LWDVRIPE-AIHRFDQFTDYGGG-GFHPSGNEVIINS--- 1285 (1516)
T ss_pred             cCcchhh-----hhhcccccc--CCCcceEe---eCce--eeeeccHH-HHhhhhhheecccc-cccCCCceEEeec---
Confidence            3322110     011256677  88887776   4554  79999854 46666544333333 4899999888765   


Q ss_pred             cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-----C-C-----------CcEEEEECCCCceeeEEEeec
Q 014154          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-----L-D-----------SYLRFWDIKTRQLLSAVFLKQ  343 (430)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-----~-d-----------g~i~iwd~~~~~~~~~~~~~~  343 (430)
                        .|||+++.++++....-   .-+.+.|+..|..++..-     . |           ...|-||......+.++.  +
T Consensus      1286 --EIwD~RTF~lLh~VP~L---dqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~--v 1358 (1516)
T KOG1832|consen 1286 --EIWDMRTFKLLHSVPSL---DQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIP--V 1358 (1516)
T ss_pred             --hhhhhHHHHHHhcCccc---cceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeee--c
Confidence              59999999988777654   236688988887665442     0 0           135566666677777743  2


Q ss_pred             cccceEEeeeccccccc
Q 014154          344 HLNEVVFDSAFADKEVA  360 (430)
Q Consensus       344 ~~~~~v~~~~~s~~g~~  360 (430)
                        ...+.+++-+|...+
T Consensus      1359 --~R~~~Dlct~~~D~~ 1373 (1516)
T KOG1832|consen 1359 --DRCLLDLCTEPTDSF 1373 (1516)
T ss_pred             --ccchhhhhcCCccce
Confidence              233567777776655

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.78  E-value=2e-07  Score=88.82  Aligned_cols=186  Identities=15%  Similarity=0.121  Sum_probs=138.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  252 (430)
                      ++..++.|+.-..+..+|+.+.+.........         ..|.-+..    +++.+.+|...|+|.+-|+++.+ .+.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---------~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~-~ih  211 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---------SGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFE-TIH  211 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccC---------CceEEEEe----cCcEEEeecccceEEeecCCcCc-eee
Confidence            45667778887789999998877665544322         23554554    78899999999999999999855 699


Q ss_pred             EEeecCCCeEEEEecCCCCEEEEEeC---------CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCC
Q 014154          253 SFDFRETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLD  322 (430)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~d  322 (430)
                      ++..|++.|..+..  .|++|++++.         |..|++||+|+.+.+..+.-+ .+ ..-+.|+|.- ..++.++..
T Consensus       212 t~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-~~-P~flrf~Psl~t~~~V~S~s  287 (1118)
T KOG1275|consen  212 TFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-YG-PQFLRFHPSLTTRLAVTSQS  287 (1118)
T ss_pred             eeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-cC-chhhhhcccccceEEEEecc
Confidence            99999999987665  5889988874         456899999998887666654 33 3567788864 568888899


Q ss_pred             CcEEEEECCC-CceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          323 SYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       323 g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      |...+-|..+ +.+..........+..+..+.+|++|.. +.+..+|.|.+|...+
T Consensus       288 Gq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~  343 (1118)
T KOG1275|consen  288 GQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP  343 (1118)
T ss_pred             cceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence            9999998443 2222222122233455799999999999 9999999999998443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.75  E-value=3.5e-05  Score=66.66  Aligned_cols=212  Identities=19%  Similarity=0.137  Sum_probs=130.9

Q ss_pred             CCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeec
Q 014154           64 NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT  143 (430)
Q Consensus        64 ~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~  143 (430)
                      +|.++++--..+.|..|+..++.... +..          ....++.+....        +.++.+...+.. ++++.. 
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~----------~~~~G~~~~~~~--------g~l~v~~~~~~~-~~d~~~-   69 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDL----------PGPNGMAFDRPD--------GRLYVADSGGIA-VVDPDT-   69 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEE-EES----------SSEEEEEEECTT--------SEEEEEETTCEE-EEETTT-
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEE-Eec----------CCCceEEEEccC--------CEEEEEEcCceE-EEecCC-
Confidence            56666776678899999987665322 221          124445554222        466666655543 334322 


Q ss_pred             CccccCCCcceE-Eeeec----CCCceEEEEEcCCCCEEEEEeCC--------CeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154          144 KVSAESSCSTVK-SWNVC----ASGTIAFSKVDISEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (430)
Q Consensus       144 ~~~~~~~~~~i~-~~~~~----~~~~i~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~  210 (430)
                              +.+. +....    .......++++++|++.++....        |.|..++.. ++........       
T Consensus        70 --------g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-------  133 (246)
T PF08450_consen   70 --------GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-------  133 (246)
T ss_dssp             --------TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-------
T ss_pred             --------CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-------
Confidence                    1222 22221    23567889999999977765543        557777777 4433322221       


Q ss_pred             cCCcceeEEEEeecCCCCEEE-EEeCCCcEEEEECCCCCc-c--eEEE-eecC--CCeEEEEecCCCCEEEEEeCCCcEE
Q 014154          211 FTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRR-P--VMSF-DFRE--TPIKAVAEEPDSFNIYIGNGSGDLA  283 (430)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~-~--~~~~-~~~~--~~i~~~~~sp~~~~l~~~~~d~~i~  283 (430)
                         ...+.++|  +|+++.|+ +-+..+.|..|++..... .  ...+ ....  +....+++..+|++.++....+.|.
T Consensus       134 ---~~pNGi~~--s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~  208 (246)
T PF08450_consen  134 ---GFPNGIAF--SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV  208 (246)
T ss_dssp             ---SSEEEEEE--ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred             ---ccccceEE--CCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence               44688999  88998665 566788899999864322 1  1122 2222  2378899999999888888899999


Q ss_pred             EEEccCCeEEeeeeCCCCCCeEEEEec-CCCCeEEEE
Q 014154          284 SVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASC  319 (430)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~s~  319 (430)
                      ++|.. |+.+..+... ...+++++|. ++...|+..
T Consensus       209 ~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  209 VFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEE
T ss_pred             EECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEE
Confidence            99987 9888888765 5689999994 665555443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.75  E-value=6.9e-05  Score=64.82  Aligned_cols=208  Identities=15%  Similarity=0.087  Sum_probs=127.3

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  204 (430)
                      .+++-...+.+..++..         .+...++...  . ...+++...+..|+.+... .+.++|+.+++.........
T Consensus        14 l~~~D~~~~~i~~~~~~---------~~~~~~~~~~--~-~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~   80 (246)
T PF08450_consen   14 LYWVDIPGGRIYRVDPD---------TGEVEVIDLP--G-PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPD   80 (246)
T ss_dssp             EEEEETTTTEEEEEETT---------TTEEEEEESS--S-EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEET
T ss_pred             EEEEEcCCCEEEEEECC---------CCeEEEEecC--C-CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccC
Confidence            34444455556555542         2244445432  2 6777787333556656655 45666998875543332211


Q ss_pred             CCCCCCcCCcceeEEEEeecCCCCEEEEEeCC--------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEE-E
Q 014154          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-I  275 (430)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~  275 (430)
                      ..    ......+.+++  .++|++.++....        |.|..++.. ++  +..+...-...+.|+|+|+++.|+ +
T Consensus        81 ~~----~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~  151 (246)
T PF08450_consen   81 GG----VPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVA  151 (246)
T ss_dssp             TC----SCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEE
T ss_pred             CC----cccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeec
Confidence            00    01156788999  8999977776544        557777777 33  222222335678999999998776 4


Q ss_pred             EeCCCcEEEEEccCC-e------EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccce
Q 014154          276 GNGSGDLASVDIRTG-K------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV  348 (430)
Q Consensus       276 ~~~d~~i~iwd~~~~-~------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  348 (430)
                      -+..+.|..|++... .      ....+... .+..-.+++..+|++.++.-..+.|.+++.. |+.+..+.+...   .
T Consensus       152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~---~  226 (246)
T PF08450_consen  152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP---R  226 (246)
T ss_dssp             ETTTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS---S
T ss_pred             ccccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC---C
Confidence            556788999998632 1      12222322 2347889999999988877788999999987 999888765522   4


Q ss_pred             EEeeecc-cccc
Q 014154          349 VFDSAFA-DKEV  359 (430)
Q Consensus       349 v~~~~~s-~~g~  359 (430)
                      +++++|. ++..
T Consensus       227 ~t~~~fgg~~~~  238 (246)
T PF08450_consen  227 PTNCAFGGPDGK  238 (246)
T ss_dssp             EEEEEEESTTSS
T ss_pred             EEEEEEECCCCC
Confidence            6899994 4433

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=9.3e-08  Score=83.91  Aligned_cols=198  Identities=14%  Similarity=0.017  Sum_probs=137.3

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~  202 (430)
                      ..+++++.||.+..|.-....     .-..++- ...|...|.+++.+-++-++.+.+. |..++++|+++-..+.-++.
T Consensus        21 ~fiiqASlDGh~KFWkKs~is-----GvEfVKh-FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL   94 (558)
T KOG0882|consen   21 KFIIQASLDGHKKFWKKSRIS-----GVEFVKH-FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL   94 (558)
T ss_pred             heEEeeecchhhhhcCCCCcc-----ceeehhh-hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence            578889999988888643211     0112222 2356677888899989999999777 99999999987555433332


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCC---CEEEEEeCCCcEEEEECCCCCcceE-EEeecCCCeEEEEecCCCCEEEEEeC
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVM-SFDFRETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (430)
                      ..          ....+.|..++..   ..-++.-.++.+.++|-....++.. .-..|..+|.++.++|-+..+++...
T Consensus        95 ~~----------lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   95 VD----------LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             cc----------CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            21          1112223213321   2333445688999999887554443 44558999999999999999999999


Q ss_pred             CCcEEEEEccC------CeEEeee---------eCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154          279 SGDLASVDIRT------GKLLGCF---------IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       279 d~~i~iwd~~~------~~~~~~~---------~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      .|.|.-|....      .+....+         .. ......++.|+|++..+.+-+.|..|+++++++|+.++.
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe  238 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE  238 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccc-cccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence            99999998862      1111111         12 245678999999999999999999999999999876554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.71  E-value=6.1e-08  Score=56.86  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=35.4

Q ss_pred             ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 014154          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (430)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd  286 (430)
                      ++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.67  E-value=1.7e-05  Score=68.35  Aligned_cols=203  Identities=15%  Similarity=0.112  Sum_probs=139.7

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-----C
Q 014154          164 TIAFSKVDI-SEKFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----D  236 (430)
Q Consensus       164 ~i~~~~~~~-~~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----d  236 (430)
                      ....++.+| ....++.+-.-|+ ..+||..+++....+......       ...-...|  +++|++|++.-.     .
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR-------HFyGHg~f--s~dG~~LytTEnd~~~g~   76 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR-------HFYGHGVF--SPDGRLLYTTENDYETGR   76 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC-------EEecCEEE--cCCCCEEEEeccccCCCc
Confidence            445678888 5666777777665 678999999888777664432       11234567  899999998643     5


Q ss_pred             CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe------------------CCCcEEEEEccCCeEEeeee-
Q 014154          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN------------------GSGDLASVDIRTGKLLGCFI-  297 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~~-  297 (430)
                      |.|-|||....-..+..+..|.-.-..+.+.||++.|+++.                  .+-.+.+.|..+|+++.+.. 
T Consensus        77 G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   77 GVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             EEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence            78999999954445777877776777888999998888773                  22346677888898877643 


Q ss_pred             --CCCCCCeEEEEecCCCCeEEEEeCCC-------cEEEEECCCCceeeEEEee----ccccceEEeeeccccccc--cc
Q 014154          298 --GKCSGSIRSIARHPTLPIIASCGLDS-------YLRFWDIKTRQLLSAVFLK----QHLNEVVFDSAFADKEVA--NA  362 (430)
Q Consensus       298 --~~~~~~v~~i~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~s~~g~~--~~  362 (430)
                        .+|...|..+++.++|..++..-..|       .|.+++.  ++.+..+...    ......+-+++++++|..  ++
T Consensus       157 p~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t  234 (305)
T PF07433_consen  157 PPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT  234 (305)
T ss_pred             CccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE
Confidence              22377899999999997665554333       2344433  3333322221    112345789999999976  66


Q ss_pred             cCCCCceEecCCCCC
Q 014154          363 AADAPMLEIQNGNDT  377 (430)
Q Consensus       363 ~~~d~~i~~~~~~~~  377 (430)
                      +-..+.+.+|+....
T Consensus       235 sPrGg~~~~~d~~tg  249 (305)
T PF07433_consen  235 SPRGGRVAVWDAATG  249 (305)
T ss_pred             CCCCCEEEEEECCCC
Confidence            778899999977654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=1.1e-05  Score=73.05  Aligned_cols=280  Identities=11%  Similarity=0.043  Sum_probs=157.0

Q ss_pred             eeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec--cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN--AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      .+.|  +|-|.||++-..-| |.+|--.+...++.|..  +..+.|+|....+.....-+...         ----..++
T Consensus       215 yv~w--SP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~---------~~~d~e~~  282 (698)
T KOG2314|consen  215 YVRW--SPKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIV---------EEDDNEGQ  282 (698)
T ss_pred             eEEe--cCCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCcccc---------CcccCCCc
Confidence            3445  88899999987644 88997666665665543  23333444444332111100000         00012345


Q ss_pred             eeEEEEeeecCccccCCCcceEEeeec-CC-CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWNVC-AS-GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~-~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  211 (430)
                      .+.||++..+..        .+.|..- .. ..-.-..||.+++++|--..+ .|.||+......+ ..+...       
T Consensus       283 ~l~IWDI~tG~l--------krsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~ll-d~Kslk-------  345 (698)
T KOG2314|consen  283 QLIIWDIATGLL--------KRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLL-DKKSLK-------  345 (698)
T ss_pred             eEEEEEccccch--------hcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeee-cccccC-------
Confidence            778888765432        1222211 11 112246789999999977765 7999987653222 111111       


Q ss_pred             CCcceeEEEEeecCCCCEEEEEeC-----CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe---------
Q 014154          212 TPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---------  277 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---------  277 (430)
                       ...|....|  +|.+++||.-..     -..+.+-.+.+.+. +++.+.+.-.=..+-|-.+|.+|..--         
T Consensus       346 -i~gIr~Fsw--sP~~~llAYwtpe~~~~parvtL~evPs~~~-iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~  421 (698)
T KOG2314|consen  346 -ISGIRDFSW--SPTSNLLAYWTPETNNIPARVTLMEVPSKRE-IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVK  421 (698)
T ss_pred             -CccccCccc--CCCcceEEEEcccccCCcceEEEEecCccce-eeeccceeeeccEEEeccCCcEEEEEEEeecccccc
Confidence             145777788  788887775432     12455555555332 444444332223455666777776432         


Q ss_pred             -CCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeC---CCcEEEEECCC----CceeeEEEeeccccce
Q 014154          278 -GSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGL---DSYLRFWDIKT----RQLLSAVFLKQHLNEV  348 (430)
Q Consensus       278 -~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~i~iwd~~~----~~~~~~~~~~~~~~~~  348 (430)
                       .-..+.|+.++.... +..+.-  ...|...+|-|.|..+++-+.   -.++.+|.+++    .+++..  +..   ..
T Consensus       422 g~f~n~eIfrireKdIpve~vel--ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~--~dk---~~  494 (698)
T KOG2314|consen  422 GQFSNLEIFRIREKDIPVEVVEL--KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE--LDK---KF  494 (698)
T ss_pred             ceEeeEEEEEeeccCCCceeeec--chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh--hcc---cc
Confidence             112355666554432 333333  568999999999987766543   35788888873    223333  211   22


Q ss_pred             EEeeeccccccc-cc---cCCCCceEecCCC
Q 014154          349 VFDSAFADKEVA-NA---AADAPMLEIQNGN  375 (430)
Q Consensus       349 v~~~~~s~~g~~-~~---~~~d~~i~~~~~~  375 (430)
                      .+.+.|+|.|++ +.   ++..|.+.++|.+
T Consensus       495 ~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  495 ANTVFWSPKGRFVVVAALVSRRGDLEFYDTD  525 (698)
T ss_pred             cceEEEcCCCcEEEEEEecccccceEEEecc
Confidence            578899999998 32   3567899999877

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=1e-06  Score=83.06  Aligned_cols=183  Identities=21%  Similarity=0.191  Sum_probs=123.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ..+.|++++  +.+|+.|+.+|.|++++.... . .....+.         ..        ..+|.++++|+.||+|.|.
T Consensus        40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s---------~~--------~~~Gey~asCS~DGkv~I~   98 (846)
T KOG2066|consen   40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHS---------SS--------ILEGEYVASCSDDGKVVIG   98 (846)
T ss_pred             hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccc---------cc--------ccCCceEEEecCCCcEEEe
Confidence            345555554  788999999999999987532 1 2222221         11        3479999999999999999


Q ss_pred             ECCCCCcceEEEeecCCCeEEEEecCC-----CCEEEEEeCCCcEEEEEccC-C-eEEeeeeCCCCCCeEEEEecCCCCe
Q 014154          243 DTSAQRRPVMSFDFRETPIKAVAEEPD-----SFNIYIGNGSGDLASVDIRT-G-KLLGCFIGKCSGSIRSIARHPTLPI  315 (430)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~~~~sp~-----~~~l~~~~~d~~i~iwd~~~-~-~~~~~~~~~~~~~v~~i~~~~~~~~  315 (430)
                      .+-+.+. ...+..+ .++.+++++|+     .+.+++|+..| +.++.-+- + +....+... .++|.++.|  .|.+
T Consensus        99 sl~~~~~-~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~-eG~I~~i~W--~g~l  172 (846)
T KOG2066|consen   99 SLFTDDE-ITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG-EGPIHSIKW--RGNL  172 (846)
T ss_pred             eccCCcc-ceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC-ccceEEEEe--cCcE
Confidence            9888664 4555544 68999999998     47889999888 77775431 1 111134444 789999999  7889


Q ss_pred             EEEEeCCCcEEEEECCCCceeeEEEeecc---ccceEEeeeccccccccccCCCCceEecCC
Q 014154          316 IASCGLDSYLRFWDIKTRQLLSAVFLKQH---LNEVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       316 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      +|-++.+| |+|||+.+++.+..+..+..   ....-..+.|.++.+++. |...+|+|...
T Consensus       173 IAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-GW~d~v~i~~I  232 (846)
T KOG2066|consen  173 IAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-GWGDSVKICSI  232 (846)
T ss_pred             EEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-ecCCeEEEEEE
Confidence            99998888 99999999988876532211   011124566766655433 33344554443

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.64  E-value=1.2e-06  Score=83.82  Aligned_cols=143  Identities=15%  Similarity=0.172  Sum_probs=108.4

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC---------CCcEEEE
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DHQVRLY  242 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg~i~iw  242 (430)
                      .+++++.+|...|+|.+-|.++.+.+.++..|.         +.|..+..    .|++|++|+.         |..|+||
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs---------~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVY  251 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS---------GSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVY  251 (1118)
T ss_pred             ecCcEEEeecccceEEeecCCcCceeeeeeccc---------cceeeeec----cCCeEEEeecccccccccccchhhhh
Confidence            368899999999999999999999999999987         55666555    7889999875         5678999


Q ss_pred             ECCCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEE---ccCCeE-EeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          243 DTSAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVD---IRTGKL-LGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd---~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      |++..+. +.-+..+-++ .-+.|+|.- ..+++.+..|...+-|   +.+... +..+..- ...+..++++++++.|+
T Consensus       252 DLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~ala  328 (1118)
T KOG1275|consen  252 DLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN-GSGISAFDISSNGDALA  328 (1118)
T ss_pred             hhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC-CCcceeEEecCCCceEE
Confidence            9998653 3334444333 456777753 5778888899999999   333322 2222222 45699999999999999


Q ss_pred             EEeCCCcEEEEEC
Q 014154          318 SCGLDSYLRFWDI  330 (430)
Q Consensus       318 s~~~dg~i~iwd~  330 (430)
                      .|..+|.|.+|.-
T Consensus       329 fgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  329 FGDHEGHVNLWAD  341 (1118)
T ss_pred             EecccCcEeeecC
Confidence            9999999999973

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.63  E-value=2.6e-05  Score=73.60  Aligned_cols=94  Identities=15%  Similarity=0.029  Sum_probs=67.7

Q ss_pred             CCcEEEEECCC----CCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeE------------EeeeeC
Q 014154          236 DHQVRLYDTSA----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL------------LGCFIG  298 (430)
Q Consensus       236 dg~i~iwd~~~----~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~------------~~~~~~  298 (430)
                      ++.|.+.|..+    +...+..+.-. .....+.++|||+++++++ .+++|.++|+.+.+.            +.+...
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            35677888776    33334444433 4568899999999887766 489999999987552            344443


Q ss_pred             CCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       299 ~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                        .......+|.++|....|--.|..|-.||+.+
T Consensus       374 --GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 --GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             --CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence              22345678999998888888999999999876

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.60  E-value=0.00042  Score=66.55  Aligned_cols=187  Identities=14%  Similarity=0.154  Sum_probs=113.5

Q ss_pred             EEEEcCCCCEEEEEeCC-----C-----------eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC--
Q 014154          167 FSKVDISEKFSLFGGKG-----V-----------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR--  228 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d-----~-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--  228 (430)
                      .+++++...+++.+..+     +           .|...|+++|+..+.++......-.........-+..  ..++.  
T Consensus       238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~--~~~G~~~  315 (527)
T TIGR03075       238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL--KKDGKPR  315 (527)
T ss_pred             ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe--ccCCcEE
Confidence            45777777777776622     2           6788899999999988775443333221122222222  34665  


Q ss_pred             -EEEEEeCCCcEEEEECCCCCcceE--------EE----eecC-CC-----------------e-----------EEEEe
Q 014154          229 -KFVAGTNDHQVRLYDTSAQRRPVM--------SF----DFRE-TP-----------------I-----------KAVAE  266 (430)
Q Consensus       229 -~l~s~~~dg~i~iwd~~~~~~~~~--------~~----~~~~-~~-----------------i-----------~~~~~  266 (430)
                       .++.+..+|.+++.|-.+++. +.        .+    .... .+                 +           ..+++
T Consensus       316 ~~v~~~~K~G~~~vlDr~tG~~-i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~  394 (527)
T TIGR03075       316 KLLAHADRNGFFYVLDRTNGKL-LSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAY  394 (527)
T ss_pred             EEEEEeCCCceEEEEECCCCce-eccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceE
Confidence             788899999999999998763 21        11    0000 00                 0           12556


Q ss_pred             cCCCCEEEEEeCC---------------------------------CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154          267 EPDSFNIYIGNGS---------------------------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       267 sp~~~~l~~~~~d---------------------------------~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  313 (430)
                      +|+..++++...+                                 |.|.-+|+.+++.+.+.... .....+. +.-.+
T Consensus       395 Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~-~p~~~~~-l~t~g  472 (527)
T TIGR03075       395 SPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKED-FPLWGGV-LATAG  472 (527)
T ss_pred             CCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCC-CCCCCcc-eEECC
Confidence            6666555544332                                 45778899999888776642 1111121 11244


Q ss_pred             CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          314 PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       314 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      .+++.++.||.++.+|.++|+.+..+.+.+....  .-+.|.-+|+.
T Consensus       473 ~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a--~P~ty~~~G~q  517 (527)
T TIGR03075       473 DLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVG--PPVTYEQDGKQ  517 (527)
T ss_pred             cEEEEECCCCeEEEEECCCCCEeEEEeCCCCcee--cCEEEEeCCEE
Confidence            5777788899999999999999998766543222  23444456665

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.59  E-value=9.3e-05  Score=61.05  Aligned_cols=262  Identities=13%  Similarity=0.107  Sum_probs=129.3

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~   96 (430)
                      ++.|...|.+.+-+.++|     .....+.. .+.+.+-+..   .+++.++..|+.|+.....|+.+...+...+.-  
T Consensus        66 VV~GCy~g~lYfl~~~tG-----s~~w~f~~-~~~vk~~a~~---d~~~glIycgshd~~~yalD~~~~~cVykskcg--  134 (354)
T KOG4649|consen   66 VVLGCYSGGLYFLCVKTG-----SQIWNFVI-LETVKVRAQC---DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCG--  134 (354)
T ss_pred             EEEEEccCcEEEEEecch-----hheeeeee-hhhhccceEE---cCCCceEEEecCCCcEEEecccccceEEecccC--
Confidence            566777777777777775     33322221 1222222222   467789999999999999999888777665431  


Q ss_pred             CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (430)
Q Consensus        97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~  176 (430)
                             +.+..--..+...       +.+.++...|.+.-......+        .-.+|.....++|..--.- -+..
T Consensus       135 -------G~~f~sP~i~~g~-------~sly~a~t~G~vlavt~~~~~--------~~~~w~~~~~~PiF~splc-v~~s  191 (354)
T KOG4649|consen  135 -------GGTFVSPVIAPGD-------GSLYAAITAGAVLAVTKNPYS--------STEFWAATRFGPIFASPLC-VGSS  191 (354)
T ss_pred             -------CceeccceecCCC-------ceEEEEeccceEEEEccCCCC--------cceehhhhcCCccccCcee-ccce
Confidence                   1111111112211       355555555544333332221        2334554444554432110 2445


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC--------CcEEEEECCCCC
Q 014154          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--------HQVRLYDTSAQR  248 (430)
Q Consensus       177 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~  248 (430)
                      +..++-||.+.-++ +.|+.++.+.....          |..--....|..+.|..+..+        ..-.+|..+.+.
T Consensus       192 v~i~~VdG~l~~f~-~sG~qvwr~~t~Gp----------If~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~  260 (354)
T KOG4649|consen  192 VIITTVDGVLTSFD-ESGRQVWRPATKGP----------IFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGT  260 (354)
T ss_pred             EEEEEeccEEEEEc-CCCcEEEeecCCCc----------eecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCc
Confidence            66677788888777 66677775543321          100000001222233333222        223355555432


Q ss_pred             cce------EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC---eEEEE-----e-cC--
Q 014154          249 RPV------MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS---IRSIA-----R-HP--  311 (430)
Q Consensus       249 ~~~------~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---v~~i~-----~-~~--  311 (430)
                      ...      ..|..|+-.+     | ..++|..++.||.+.|.-.+  +.+.....| .+.   ++.+.     | ||  
T Consensus       261 t~~vy~~p~l~F~~h~~~~-----S-~~~ll~~~s~dgkv~il~~~--~sl~~~~s~-~g~lq~~~~~el~~eIFsSPvi  331 (354)
T KOG4649|consen  261 TLHVYLSPKLRFDLHSPGI-----S-YPKLLRRSSGDGKVMILMTS--KSLAEISSN-GGELQNLEAIELSNEIFSSPVI  331 (354)
T ss_pred             EEEEEeCcccceeccCCCC-----c-chhhhhhhcCCCcEEEEEec--ccccccccC-CCccceEEEeecCcccccCCeE
Confidence            110      1122222111     1 13577788899988886332  222233222 222   22222     2 22  


Q ss_pred             -CCCeEEEEeCCCcEEEEECCCC
Q 014154          312 -TLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       312 -~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                       +| +|+.|+.|..|+-||+.++
T Consensus       332 i~g-rl~igcRDdYv~cldl~~~  353 (354)
T KOG4649|consen  332 IDG-RLLIGCRDDYVRCLDLDTW  353 (354)
T ss_pred             Ecc-EEEEEEccCeEEEEecccc
Confidence             34 5788889999999999875

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.54  E-value=0.00035  Score=61.20  Aligned_cols=276  Identities=12%  Similarity=0.054  Sum_probs=150.5

Q ss_pred             CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEe----------ecCCeEEEecCCCCcccceeec
Q 014154           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA----------RKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g----------~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      +.+.|.|...+     +++-.+...-..  -  +..  +|+|+.++++          -..-.|.+||..+-.+..++..
T Consensus        17 ~rv~viD~d~~-----k~lGmi~~g~~~--~--~~~--spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~i   85 (342)
T PF06433_consen   17 SRVYVIDADSG-----KLLGMIDTGFLG--N--VAL--SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEI   85 (342)
T ss_dssp             EEEEEEETTTT-----EEEEEEEEESSE--E--EEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             ceEEEEECCCC-----cEEEEeecccCC--c--eeE--CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEec
Confidence            57999998887     555433321111  1  222  5677777663          3445699999988877766543


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE-----
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS-----  168 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~-----  168 (430)
                      -       ......   ... ..       +.+.....+..+.|+++.-..        .|.+.++..+.-+..+     
T Consensus        86 P-------~k~R~~---~~~-~~-------~~~~ls~dgk~~~V~N~TPa~--------SVtVVDl~~~kvv~ei~~PGC  139 (342)
T PF06433_consen   86 P-------PKPRAQ---VVP-YK-------NMFALSADGKFLYVQNFTPAT--------SVTVVDLAAKKVVGEIDTPGC  139 (342)
T ss_dssp             T-------TS-B-----BS---G-------GGEEE-TTSSEEEEEEESSSE--------EEEEEETTTTEEEEEEEGTSE
T ss_pred             C-------Ccchhe---ecc-cc-------cceEEccCCcEEEEEccCCCC--------eEEEEECCCCceeeeecCCCE
Confidence            1       100111   001 01       234444445566677654222        4555555544332221     


Q ss_pred             -EEcC-CCCEEEEEeCCCeEEEEECC-CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154          169 -KVDI-SEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       169 -~~~~-~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  245 (430)
                       -.-| ....+.+-|.||.+.-..+. .|+.......    .+.......+..-++  ...+..++--+.+|.|+--|+.
T Consensus       140 ~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~----~F~~~~dp~f~~~~~--~~~~~~~~F~Sy~G~v~~~dls  213 (342)
T PF06433_consen  140 WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK----VFDPDDDPLFEHPAY--SRDGGRLYFVSYEGNVYSADLS  213 (342)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE----ESSTTTS-B-S--EE--ETTTTEEEEEBTTSEEEEEEET
T ss_pred             EEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc----ccCCCCcccccccce--ECCCCeEEEEecCCEEEEEecc
Confidence             1222 23567788999999999887 4544322110    111101111222233  3344445546899999999988


Q ss_pred             CCCc-ceEEEeec----------CCCeEEEEecCCCCEEEEEeCC----------CcEEEEEccCCeEEeeeeCCCCCCe
Q 014154          246 AQRR-PVMSFDFR----------ETPIKAVAEEPDSFNIYIGNGS----------GDLASVDIRTGKLLGCFIGKCSGSI  304 (430)
Q Consensus       246 ~~~~-~~~~~~~~----------~~~i~~~~~sp~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~v  304 (430)
                      .... ....+..-          .+.-.-+++++..+.|++--..          ..|.+||+.+++.+.++..  ..++
T Consensus       214 g~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l--~~~~  291 (342)
T PF06433_consen  214 GDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL--EHPI  291 (342)
T ss_dssp             TSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE--EEEE
T ss_pred             CCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC--CCcc
Confidence            6442 11122110          1223457777766666654321          2488899999999999986  3468


Q ss_pred             EEEEecCCCC-eEEEE-eCCCcEEEEECCCCceeeEEEeecc
Q 014154          305 RSIARHPTLP-IIASC-GLDSYLRFWDIKTRQLLSAVFLKQH  344 (430)
Q Consensus       305 ~~i~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~  344 (430)
                      .+|..+.+.+ +|++. ..++.|.+||..+|+.+.++.--|.
T Consensus       292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~  333 (342)
T PF06433_consen  292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE  333 (342)
T ss_dssp             SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred             ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence            8999998764 66554 4578999999999999998653344

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.53  E-value=4.5e-05  Score=70.96  Aligned_cols=137  Identities=8%  Similarity=-0.007  Sum_probs=89.0

Q ss_pred             eeEEEEeecCCCCE-EEEEeCC---CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-C--CCcEEEEEcc
Q 014154          216 FTSAAFLSIDDHRK-FVAGTND---HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-G--SGDLASVDIR  288 (430)
Q Consensus       216 v~~~~~~~~~~~~~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~--d~~i~iwd~~  288 (430)
                      .....|  +|+++. ++..+.+   ..|.++|+.+++.  ..+....+......|+|||+.|+... .  +..|.++|+.
T Consensus       190 ~~~p~w--SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        190 NIFPKW--ANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             eEeEEE--CCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            456778  899984 6654443   4699999988653  33333445667788999998776543 2  3568888988


Q ss_pred             CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC-C--cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC
Q 014154          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-S--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA  364 (430)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~  364 (430)
                      +++.. .+..+ ........|+|||+.|+..+.. +  .|++.|+.+++..... ..+.     ....|+|||+. +...
T Consensus       266 ~g~~~-~LT~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~-----~~~~~SPDG~~Ia~~~  337 (419)
T PRK04043        266 TKTLT-QITNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGK-----NNSSVSTYKNYIVYSS  337 (419)
T ss_pred             CCcEE-EcccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCC-----cCceECCCCCEEEEEE
Confidence            77643 34433 3323456899999877766532 2  6888899887764432 2222     12489999997 4433

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=4.9e-05  Score=72.75  Aligned_cols=211  Identities=14%  Similarity=0.076  Sum_probs=128.5

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCc-eEEEEEeecCcccccccCceEEEEccCC-----ee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDG-IVGLHLFKRQREESSSRSRTLLTCTTKG-----KA  135 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~  135 (430)
                      .+.+..++.|+.+|.|.+.+- .-+.+..++.+        ... +..+...+..        ..+++..+|+     .+
T Consensus        32 ~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~--------~~siv~~L~~~~~~--------~~L~sv~Ed~~~np~ll   94 (933)
T KOG2114|consen   32 SSSTGSVVIGTADGRVVILNS-SFQLIRGFQAY--------EQSIVQFLYILNKQ--------NFLFSVGEDEQGNPVLL   94 (933)
T ss_pred             cCCCceEEEeeccccEEEecc-cceeeehheec--------chhhhhHhhcccCc--------eEEEEEeecCCCCceEE
Confidence            456678999999999999874 33333555542        122 2222222222        2566555554     47


Q ss_pred             EEEEeeecCccc-cCCCcceEEeeec---CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeEeeCCCCCCCCC
Q 014154          136 SMRSIEVTKVSA-ESSCSTVKSWNVC---ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--CEKIWTAKPPPKNSLG  209 (430)
Q Consensus       136 ~v~~~~~~~~~~-~~~~~~i~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~  209 (430)
                      .||+++...... .-.-+..+++...   ...++.+++++.+-+.+++|-.+|.|.++.-+-  .+-.+....+.     
T Consensus        95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~-----  169 (933)
T KOG2114|consen   95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHR-----  169 (933)
T ss_pred             EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeecc-----
Confidence            899887553211 1111122444422   235788999999999999999999999985431  11111111111     


Q ss_pred             CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (430)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~  289 (430)
                        ...+|+.++|.  .++..++-...-..|.+|.+.........+..|+..+.|..+++....+++++ +..|.+||...
T Consensus       170 --~~~pITgL~~~--~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~  244 (933)
T KOG2114|consen  170 --GKEPITGLALR--SDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG  244 (933)
T ss_pred             --CCCCceeeEEe--cCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence              12789999995  44544222233457999999853312444777888999999987666466554 45699999876


Q ss_pred             CeEEeeee-CC
Q 014154          290 GKLLGCFI-GK  299 (430)
Q Consensus       290 ~~~~~~~~-~~  299 (430)
                      ..+...|. +|
T Consensus       245 ~~~cfaf~~g~  255 (933)
T KOG2114|consen  245 RGPCFAFEVGE  255 (933)
T ss_pred             cceeeeecCCC
Confidence            66666776 54

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=1.4e-05  Score=75.70  Aligned_cols=174  Identities=14%  Similarity=0.071  Sum_probs=118.5

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      ..++.|+..|.+.+......+.         ..+  .|...      ..+|.++++|+.||+|.|..+-+.+....+.-+
T Consensus        50 ~~~~~GtH~g~v~~~~~~~~~~---------~~~--~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~  112 (846)
T KOG2066|consen   50 KFFALGTHRGAVYLTTCQGNPK---------TNF--DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK  112 (846)
T ss_pred             ceeeeccccceEEEEecCCccc---------ccc--ccccc------ccCCceEEEecCCCcEEEeeccCCccceeEecC
Confidence            3677788888888877654321         111  11111      458999999999999999999887766555443


Q ss_pred             CCCCCCCcCCcceeEEEEeecCC-----CCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDD-----HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~-----~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                                .++.++++  +|+     ...+++|+.-| +.++.-+-... ....+....++|.++.|.  |++||=++
T Consensus       113 ----------rpiksial--~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan  177 (846)
T KOG2066|consen  113 ----------RPIKSIAL--HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN  177 (846)
T ss_pred             ----------CcceeEEe--ccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence                      45788888  565     56899999888 77765432111 112345557899999996  66998887


Q ss_pred             CCCcEEEEEccCCeEEeeeeCCC-----CCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          278 GSGDLASVDIRTGKLLGCFIGKC-----SGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       278 ~d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      .+| |++||+.+.+.+..++..+     ..-...+.|.++.+ |+.| +--+|+|..++.
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~  234 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK  234 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence            777 8999999998887766431     11234577876654 4444 445689888873

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=2.8e-06  Score=73.89  Aligned_cols=85  Identities=15%  Similarity=0.166  Sum_probs=67.4

Q ss_pred             cCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154          160 CASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  238 (430)
                      .++..|..++|+|..+ ++..++.+..|.|.|+++...+..+..+          ..+.+++|. -.+.++|..|...|.
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~----------~~~wSC~wD-lde~h~IYaGl~nG~  259 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY----------NQIWSCCWD-LDERHVIYAGLQNGM  259 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc----------CCceeeeec-cCCcceeEEeccCce
Confidence            4567899999999766 7888999999999999998877776654          568888994 234567888889999


Q ss_pred             EEEEECCCCCcceEEEe
Q 014154          239 VRLYDTSAQRRPVMSFD  255 (430)
Q Consensus       239 i~iwd~~~~~~~~~~~~  255 (430)
                      |.+||++..+.++..+.
T Consensus       260 VlvyD~R~~~~~~~e~~  276 (463)
T KOG1645|consen  260 VLVYDMRQPEGPLMELV  276 (463)
T ss_pred             EEEEEccCCCchHhhhh
Confidence            99999998765544443

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.47  E-value=0.00041  Score=57.37  Aligned_cols=299  Identities=11%  Similarity=0.041  Sum_probs=154.6

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCC-CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ..++.|+..+.++--|..+|     .+.  |.. -...+.+.++-     -|++++.|...|.+.+.+..+|.....+..
T Consensus        24 T~v~igSHs~~~~avd~~sG-----~~~--We~ilg~RiE~sa~v-----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~   91 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSG-----NLI--WEAILGVRIECSAIV-----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI   91 (354)
T ss_pred             eEEEEecCCceEEEecCCCC-----cEE--eehhhCceeeeeeEE-----ECCEEEEEEccCcEEEEEecchhheeeeee
Confidence            45778888999999999887     444  221 11111122222     245699999999999999999988777665


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE-EEEEcC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA-FSKVDI  172 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~-~~~~~~  172 (430)
                      .         +.+..-...+...       +.+..++.||+....+....          -.+|...-++.+. +-++.|
T Consensus        92 ~---------~~vk~~a~~d~~~-------glIycgshd~~~yalD~~~~----------~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   92 L---------ETVKVRAQCDFDG-------GLIYCGSHDGNFYALDPKTY----------GCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             h---------hhhccceEEcCCC-------ceEEEecCCCcEEEeccccc----------ceEEecccCCceeccceecC
Confidence            2         1222222333333       67888888888887775432          2355544333332 334555


Q ss_pred             CCCEEEEEeCCCeEEEEECCCC--eeeEeeCCCCCCCCCCcCCcceeEE-EEeecCCCCEEEEEeCCCcEEEEECCCCCc
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSA-AFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  249 (430)
                      ....|+.+...|.+..-+.++.  ..++.....          .++.+- .+    -+..+..++-||.+.-+| ..++.
T Consensus       146 g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~----------~PiF~splc----v~~sv~i~~VdG~l~~f~-~sG~q  210 (354)
T KOG4649|consen  146 GDGSLYAAITAGAVLAVTKNPYSSTEFWAATRF----------GPIFASPLC----VGSSVIITTVDGVLTSFD-ESGRQ  210 (354)
T ss_pred             CCceEEEEeccceEEEEccCCCCcceehhhhcC----------CccccCcee----ccceEEEEEeccEEEEEc-CCCcE
Confidence            4556666777777666655543  222222111          111110 01    133445555666666666 23332


Q ss_pred             ceEEEeecCCCeEE-EEec-CCCCEEEEEeCCCcEE--------EEEccCCeEEeeeeCCCCCCeEEEEecC-C---CCe
Q 014154          250 PVMSFDFRETPIKA-VAEE-PDSFNIYIGNGSGDLA--------SVDIRTGKLLGCFIGKCSGSIRSIARHP-T---LPI  315 (430)
Q Consensus       250 ~~~~~~~~~~~i~~-~~~s-p~~~~l~~~~~d~~i~--------iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~---~~~  315 (430)
                       +..+. ..++|.. -+.+ |..+.|..+..+..+.        +|..++|.....+...    -..++++. .   .++
T Consensus       211 -vwr~~-t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p----~l~F~~h~~~~S~~~l  284 (354)
T KOG4649|consen  211 -VWRPA-TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSP----KLRFDLHSPGISYPKL  284 (354)
T ss_pred             -EEeec-CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCc----ccceeccCCCCcchhh
Confidence             22221 1233321 1122 4445555555544333        4444444333222211    01222221 1   246


Q ss_pred             EEEEeCCCcEEEEEC---------CCCceee--EEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          316 IASCGLDSYLRFWDI---------KTRQLLS--AVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       316 l~s~~~dg~i~iwd~---------~~~~~~~--~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      |..++.||.+.|--+         +.+++..  .+.+.+    .|++--.--+|+++.+..|..++-|+.+.
T Consensus       285 l~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~----eIFsSPvii~grl~igcRDdYv~cldl~~  352 (354)
T KOG4649|consen  285 LRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSN----EIFSSPVIIDGRLLIGCRDDYVRCLDLDT  352 (354)
T ss_pred             hhhhcCCCcEEEEEecccccccccCCCccceEEEeecCc----ccccCCeEEccEEEEEEccCeEEEEeccc
Confidence            777889998888733         2232221  111211    11111111258889999999999999865

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.47  E-value=0.00029  Score=65.09  Aligned_cols=73  Identities=26%  Similarity=0.335  Sum_probs=62.0

Q ss_pred             CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC
Q 014154          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (430)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  290 (430)
                      +..|.++++  +|+...|+.|+.||+|.+||...+   +..+....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       259 ~s~v~~ca~--sp~E~kLvlGC~DgSiiLyD~~~~---~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  259 PSQVICCAR--SPSEDKLVLGCEDGSIILYDTTRG---VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCcceEEec--CcccceEEEEecCCeEEEEEcCCC---eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            467899999  899999999999999999999864   2333344567789999999999999999999999998643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.44  E-value=0.00023  Score=70.98  Aligned_cols=209  Identities=14%  Similarity=0.106  Sum_probs=126.9

Q ss_pred             CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe
Q 014154          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG  181 (430)
Q Consensus       102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~  181 (430)
                      +++.|.++.+.....        .++.++..|.+.+.+.....         +.+-. .....|.+++|+|++..++..+
T Consensus        67 gd~~i~s~~fl~d~~--------~i~v~~~~G~iilvd~et~~---------~eivg-~vd~GI~aaswS~Dee~l~liT  128 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTN--------SICVITALGDIILVDPETLE---------LEIVG-NVDNGISAASWSPDEELLALIT  128 (1265)
T ss_pred             CCcceEEEEEecccc--------eEEEEecCCcEEEEcccccc---------eeeee-eccCceEEEeecCCCcEEEEEe
Confidence            446888888876654        67777888888777554322         11111 1246799999999999999999


Q ss_pred             CCCeEEEEECC----C-------------------CeeeEeeCCCCCC------------CCCCcCCcceeEEEEeecCC
Q 014154          182 KGVEVNVWDLD----K-------------------CEKIWTAKPPPKN------------SLGIFTPTWFTSAAFLSIDD  226 (430)
Q Consensus       182 ~d~~i~~~d~~----~-------------------~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~  226 (430)
                      ..+++.+-+-.    .                   |+....+.+..+.            .......+.=+.+.|  --|
T Consensus       129 ~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW--RgD  206 (1265)
T KOG1920|consen  129 GRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW--RGD  206 (1265)
T ss_pred             CCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE--ccC
Confidence            88887765431    0                   0100111110000            000001122345788  678


Q ss_pred             CCEEEEEe----CC-CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe---CCCcEEEEEccCCeE----Ee
Q 014154          227 HRKFVAGT----ND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKL----LG  294 (430)
Q Consensus       227 ~~~l~s~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~---~d~~i~iwd~~~~~~----~~  294 (430)
                      |.++++..    .+ ..|++||-. +.. -..-....+.-.+++|-|.|.++++-.   .|+.|.+|.- +|-.    ..
T Consensus       207 g~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l  283 (1265)
T KOG1920|consen  207 GEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVL  283 (1265)
T ss_pred             CcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCcccccccc
Confidence            88888732    23 789999977 221 111111123346899999999988764   4567888874 3332    22


Q ss_pred             eeeCCCCCCeEEEEecCCCCeEEE---EeCCCcEEEEECCCCc
Q 014154          295 CFIGKCSGSIRSIARHPTLPIIAS---CGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       295 ~~~~~~~~~v~~i~~~~~~~~l~s---~~~dg~i~iwd~~~~~  334 (430)
                      .+... ..+|..++|+.++..|++   ......|++|-+.+..
T Consensus       284 ~~p~d-e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  284 PFPLD-EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             CCccc-ccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence            23332 345999999999999887   5555569999987644

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.41  E-value=0.00021  Score=61.81  Aligned_cols=184  Identities=17%  Similarity=0.142  Sum_probs=116.8

Q ss_pred             EEEcCCCCEEEEEe-----CCCeEEEEECC-CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-------
Q 014154          168 SKVDISEKFSLFGG-----KGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-------  234 (430)
Q Consensus       168 ~~~~~~~~~l~~~~-----~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-------  234 (430)
                      -.|+++|++|++.-     ..|.|-|||.. +.+.+.++..+...         ...+.+  .||+..|+++.       
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIG---------PHel~l--~pDG~tLvVANGGI~Thp  124 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIG---------PHELLL--MPDGETLVVANGGIETHP  124 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcC---------hhhEEE--cCCCCEEEEEcCCCccCc
Confidence            47899999998743     35789999998 66777777665422         334556  68887777653       


Q ss_pred             -----------CCCcEEEEECCCCCcceEE--E--eecCCCeEEEEecCCCCEEEEEeCCCc-------EEEEEccCCeE
Q 014154          235 -----------NDHQVRLYDTSAQRRPVMS--F--DFRETPIKAVAEEPDSFNIYIGNGSGD-------LASVDIRTGKL  292 (430)
Q Consensus       235 -----------~dg~i~iwd~~~~~~~~~~--~--~~~~~~i~~~~~sp~~~~l~~~~~d~~-------i~iwd~~~~~~  292 (430)
                                 .+.++.+.|..++.. +..  +  ..|...|..+++.++|..++..-..|.       |-+++.  ++.
T Consensus       125 d~GR~kLNl~tM~psL~~ld~~sG~l-l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~  201 (305)
T PF07433_consen  125 DSGRAKLNLDTMQPSLVYLDARSGAL-LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGA  201 (305)
T ss_pred             ccCceecChhhcCCceEEEecCCCce-eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCc
Confidence                       233455556666552 333  3  336678999999999866665543332       334432  222


Q ss_pred             EeeeeCC------CCCCeEEEEecCCCCeEEEE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCC
Q 014154          293 LGCFIGK------CSGSIRSIARHPTLPIIASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAAD  365 (430)
Q Consensus       293 ~~~~~~~------~~~~v~~i~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~  365 (430)
                      +..+...      ....+-+|++++++.++++. -.-+.+.+||..+++.+....+..     +..++-.+++ ++.++.
T Consensus       202 ~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-----~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  202 LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD-----ACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc-----eeeeeecCCc-eEEeCC
Confidence            2222211      14678999999999877554 466789999999999998753321     3566666666 544444


Q ss_pred             CCceEe
Q 014154          366 APMLEI  371 (430)
Q Consensus       366 d~~i~~  371 (430)
                      .|.+..
T Consensus       276 ~G~~~~  281 (305)
T PF07433_consen  276 QGQLIR  281 (305)
T ss_pred             CccEEE
Confidence            444433

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.41  E-value=0.00055  Score=65.48  Aligned_cols=282  Identities=13%  Similarity=0.079  Sum_probs=152.7

Q ss_pred             eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceE--EEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIV--GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  144 (430)
                      .++.++.++.|.-.|..+|+.+..+.......  .....+.  .+.++.  .       +.++.++.++.+..++.....
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--~~~~~~~~~g~~~~~--~-------~~V~v~~~~g~v~AlD~~TG~  131 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPAD--RGCCDVVNRGVAYWD--P-------RKVFFGTFDGRLVALDAETGK  131 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCcc--ccccccccCCcEEcc--C-------CeEEEecCCCeEEEEECCCCC
Confidence            47778888999999999999887765421100  0000000  011111  0       366667777766666644332


Q ss_pred             ccccCCCcceEEeeecCCCce---EEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154          145 VSAESSCSTVKSWNVCASGTI---AFSKVDI--SEKFSLFGG---------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (430)
Q Consensus       145 ~~~~~~~~~i~~~~~~~~~~i---~~~~~~~--~~~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  210 (430)
                                .+|.......+   ..+.-+|  .+..++.++         .++.+..+|..+++.++............
T Consensus       132 ----------~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~  201 (488)
T cd00216         132 ----------QVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAF  201 (488)
T ss_pred             ----------EeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCC
Confidence                      24444332221   0011111  234555554         36789999999999999876532211111


Q ss_pred             cCC-----------cce-eEEEEeecCCCCEEEEEeCCC------------------cEEEEECCCCCcceEEEee--cC
Q 014154          211 FTP-----------TWF-TSAAFLSIDDHRKFVAGTNDH------------------QVRLYDTSAQRRPVMSFDF--RE  258 (430)
Q Consensus       211 ~~~-----------~~v-~~~~~~~~~~~~~l~s~~~dg------------------~i~iwd~~~~~~~~~~~~~--~~  258 (430)
                      ...           ..+ ...++  .+.+.+++.++.++                  .|.-+|..+++. +-.++.  |.
T Consensus       202 ~~~~~~~~~~~~~g~~vw~~pa~--d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-~W~~~~~~~~  278 (488)
T cd00216         202 PTWGPDRQMWGPGGGTSWASPTY--DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-KWFYQTTPHD  278 (488)
T ss_pred             CCCCCCcceecCCCCCccCCeeE--eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-EEEeeCCCCC
Confidence            000           001 12233  34456777777665                  788999998775 333321  11


Q ss_pred             C----CeEEEEec----CCCC---EEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE--------
Q 014154          259 T----PIKAVAEE----PDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC--------  319 (430)
Q Consensus       259 ~----~i~~~~~s----p~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~--------  319 (430)
                      .    ......+.    -++.   .+++++.+|.+...|.++|+.+......    ...+..+|  ..++.+        
T Consensus       279 ~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~~~~~~  352 (488)
T cd00216         279 LWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFHIPLGL  352 (488)
T ss_pred             CcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEccccccccC
Confidence            0    00001111    1232   6788889999999999999998776531    11233444  223222        


Q ss_pred             ----------eCCCcEEEEECCCCceeeEEEeecccc-----ceE--EeeeccccccccccCCCCceEecCCCCCcc
Q 014154          320 ----------GLDSYLRFWDIKTRQLLSAVFLKQHLN-----EVV--FDSAFADKEVANAAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       320 ----------~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~v--~~~~~s~~g~~~~~~~d~~i~~~~~~~~~~  379 (430)
                                ..+|.|.-.|+.+|+.+.......+..     ...  ..+.. ..+.+++++.||.|+.++....+.
T Consensus       353 ~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~~  428 (488)
T cd00216         353 PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDATTGKE  428 (488)
T ss_pred             cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECCCCce
Confidence                      246789999999999988764431110     000  01111 123346778899999999876543

The alignment model contains an 8-bladed beta-propeller.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=9.6e-05  Score=70.82  Aligned_cols=206  Identities=15%  Similarity=0.189  Sum_probs=127.6

Q ss_pred             EEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCC----
Q 014154          109 LHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV----  184 (430)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----  184 (430)
                      +..+....       +.++.++.+|.+.+.+-.+.         .++-|.......|..+....+.++|++.+.|+    
T Consensus        28 isc~~s~~-------~~vvigt~~G~V~~Ln~s~~---------~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np   91 (933)
T KOG2114|consen   28 ISCCSSST-------GSVVIGTADGRVVILNSSFQ---------LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNP   91 (933)
T ss_pred             eeEEcCCC-------ceEEEeeccccEEEecccce---------eeehheecchhhhhHhhcccCceEEEEEeecCCCCc
Confidence            45555554       78899999998887764332         22334432223244444444456777766654    


Q ss_pred             -eEEEEECCCC------eeeE--eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC--CCcc-eE
Q 014154          185 -EVNVWDLDKC------EKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA--QRRP-VM  252 (430)
Q Consensus       185 -~i~~~d~~~~------~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~-~~  252 (430)
                       .|++|+++..      .++.  .+..+...    ..+.++.+++.  +.+-..+|+|-.+|.|..+.-.-  .+-. ..
T Consensus        92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np----~~~~p~s~l~V--s~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~  165 (933)
T KOG2114|consen   92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNP----TNPSPASSLAV--SEDLKTIVCGFTNGLVICYKGDILRDRGSRQD  165 (933)
T ss_pred             eEEEEecccccCCCCCcceeeeeeeeccCCC----CCCCcceEEEE--EccccEEEEEecCcEEEEEcCcchhcccccee
Confidence             4899999642      2221  11111100    12366778888  67788999999999999885321  1111 11


Q ss_pred             EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      .......+|+.+++..++..++-......|.+|.+....+ ...+..| ...+.|..|++....+++++. ..|.+|+..
T Consensus       166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~-G~~lnCss~~~~t~qfIca~~-e~l~fY~sd  243 (933)
T KOG2114|consen  166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNN-GISLNCSSFSDGTYQFICAGS-EFLYFYDSD  243 (933)
T ss_pred             eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccC-CccceeeecCCCCccEEEecC-ceEEEEcCC
Confidence            2222357999999988887733333456799999974443 3335555 889999999886665666654 459999987


Q ss_pred             CCceeeE
Q 014154          332 TRQLLSA  338 (430)
Q Consensus       332 ~~~~~~~  338 (430)
                      ...+-..
T Consensus       244 ~~~~cfa  250 (933)
T KOG2114|consen  244 GRGPCFA  250 (933)
T ss_pred             Ccceeee
Confidence            6555554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.38  E-value=3.2e-07  Score=87.29  Aligned_cols=156  Identities=17%  Similarity=0.151  Sum_probs=111.5

Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC--c
Q 014154          161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--Q  238 (430)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~  238 (430)
                      +....+|++|+...++|++|+..|.|++|++.+|........|.         +.|+.+.-  +.+|..+++.+...  .
T Consensus      1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~---------SavT~veP--s~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ---------SAVTLVEP--SVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred             cccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccc---------cccccccc--cCCcceeeeeccccCch
Confidence            44678999999999999999999999999999999888888776         66776666  77888776655443  4


Q ss_pred             EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC---CCCCeEEEEecCCCCe
Q 014154          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPI  315 (430)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~  315 (430)
                      ..+|++..-..+.+.+..    -.++.|+.....-+.|+....+.+||+.++.++.++-..   ....-+.+.|+|+..+
T Consensus      1169 saLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            679999864445555543    467888876666677777778999999999877663321   0122356678887766


Q ss_pred             EEEEeCCCcEEEEECCCCcee
Q 014154          316 IASCGLDSYLRFWDIKTRQLL  336 (430)
Q Consensus       316 l~s~~~dg~i~iwd~~~~~~~  336 (430)
                      ++   .||  .+||++..+.+
T Consensus      1245 Il---ndG--vLWDvR~~~aI 1260 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPEAI 1260 (1516)
T ss_pred             Ee---eCc--eeeeeccHHHH
Confidence            55   344  25666544433

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.34  E-value=0.00027  Score=60.07  Aligned_cols=198  Identities=8%  Similarity=0.076  Sum_probs=115.5

Q ss_pred             CceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          163 GTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       163 ~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      ..+..++|+|+.+ ++++....+.|..++. +|+.+..+....        ....-.+++  -.++.++++.-.++.+.+
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g--------~~D~EgI~y--~g~~~~vl~~Er~~~L~~   90 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG--------FGDYEGITY--LGNGRYVLSEERDQRLYI   90 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS---------SSEEEEEE---STTEEEEEETTTTEEEE
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC--------CCCceeEEE--ECCCEEEEEEcCCCcEEE
Confidence            4599999999755 5556667788888887 477777665432        144677888  456666666556889999


Q ss_pred             EECCCCCcc-----eEEEe-----ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC---CeEEeee-----e--CCCC
Q 014154          242 YDTSAQRRP-----VMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT---GKLLGCF-----I--GKCS  301 (430)
Q Consensus       242 wd~~~~~~~-----~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~---~~~~~~~-----~--~~~~  301 (430)
                      +++......     ...+.     .++..+-.++|+|.++.|+++-+..-..+|.+..   ...+...     .  ....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (248)
T PF06977_consen   91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV  170 (248)
T ss_dssp             EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred             EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence            988432211     11122     1345688999999988888887777777777653   1111111     1  1113


Q ss_pred             CCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeecccc------ceEEeeeccccccccccCCCCceEec
Q 014154          302 GSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLN------EVVFDSAFADKEVANAAADAPMLEIQ  372 (430)
Q Consensus       302 ~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~v~~~~~s~~g~~~~~~~d~~i~~~  372 (430)
                      ..+.++.++|.. .+++....+..|.++| .+|+.+..+.+.....      ...-.++|.++|.+..++..+.+++|
T Consensus       171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            467899999964 5667777888899999 6788888776654211      12468999999998666667766655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.33  E-value=5e-05  Score=75.39  Aligned_cols=199  Identities=14%  Similarity=0.080  Sum_probs=129.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ..|.++.|..+.+.++.+...|.|.+.|.++......-..          ...|.+++|  +||+..++..+..+++.+-
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v----------d~GI~aasw--S~Dee~l~liT~~~tll~m  136 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV----------DNGISAASW--SPDEELLALITGRQTLLFM  136 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec----------cCceEEEee--cCCCcEEEEEeCCcEEEEE
Confidence            5788899999999999999999999998877544322111          155899999  9999999998888877654


Q ss_pred             EC----CCCCc------------------ceEEEeecC---------------------CCeEEEEecCCCCEEEEEe--
Q 014154          243 DT----SAQRR------------------PVMSFDFRE---------------------TPIKAVAEEPDSFNIYIGN--  277 (430)
Q Consensus       243 d~----~~~~~------------------~~~~~~~~~---------------------~~i~~~~~sp~~~~l~~~~--  277 (430)
                      +-    -..+.                  .-..|.+..                     ..=++|.|--||.++++..  
T Consensus       137 T~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~  216 (1265)
T KOG1920|consen  137 TKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE  216 (1265)
T ss_pred             eccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence            32    11000                  001121110                     1123588999999999843  


Q ss_pred             ---CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe---CCCcEEEEECCCCceeeEEEeeccccce-EE
Q 014154          278 ---GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG---LDSYLRFWDIKTRQLLSAVFLKQHLNEV-VF  350 (430)
Q Consensus       278 ---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~-v~  350 (430)
                         ....|++||-. |.+-..-... .+.=.+++|-|.|..+++-.   .|+.|.+|.-+ |-.-..+.++-..+.. +.
T Consensus       217 ~~~~~RkirV~drE-g~Lns~se~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve  293 (1265)
T KOG1920|consen  217 SETGTRKIRVYDRE-GALNSTSEPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVE  293 (1265)
T ss_pred             ccCCceeEEEeccc-chhhcccCcc-cccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchh
Confidence               33789999976 5432222221 33446789999999888763   55679999853 4433333333333333 79


Q ss_pred             eeecccccccccc---CCC-CceEecCCCC
Q 014154          351 DSAFADKEVANAA---ADA-PMLEIQNGND  376 (430)
Q Consensus       351 ~~~~s~~g~~~~~---~~d-~~i~~~~~~~  376 (430)
                      .++|+.++.++++   ... ..|++|....
T Consensus       294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  294 ELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             eeeecCCCCceeeeecccccceEEEEEecC
Confidence            9999999998333   334 4499997654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.27  E-value=4.2e-05  Score=70.45  Aligned_cols=73  Identities=19%  Similarity=0.199  Sum_probs=62.0

Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      ..+.+.|++++|+...|+.|+.||.|.+||...+.-...  .. .-.++.++|||+|.++++|+..|.+.+||+.-
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka-~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KA-EFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--ee-cccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            457899999999999999999999999999876643322  22 44678999999999999999999999999853

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.25  E-value=0.00075  Score=61.91  Aligned_cols=212  Identities=14%  Similarity=0.061  Sum_probs=113.8

Q ss_pred             ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee---cCCC--
Q 014154          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDH--  227 (430)
Q Consensus       153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~--  227 (430)
                      ++.+.+.. .+.|++++.+ +-.++++|..+|.+.|.|++....++...... ..........++++.|..   ..|+  
T Consensus        78 P~~l~~~~-~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   78 PLTLLDAK-QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEEE----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             chhheecc-CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCccc
Confidence            44455544 7899999997 67799999999999999998888776632211 111122235688888852   2233  


Q ss_pred             -CEEEEEeCCCcEEEEECCC--CCcc----eEEEeecCCCeEEEE-ecCC-----------------C---CEEEEEeCC
Q 014154          228 -RKFVAGTNDHQVRLYDTSA--QRRP----VMSFDFRETPIKAVA-EEPD-----------------S---FNIYIGNGS  279 (430)
Q Consensus       228 -~~l~s~~~dg~i~iwd~~~--~~~~----~~~~~~~~~~i~~~~-~sp~-----------------~---~~l~~~~~d  279 (430)
                       -++++|+..|.+.+|.+.-  +...    ......+.++|..|. |+.+                 +   +-+++...+
T Consensus       155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe  234 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE  234 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred             ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence             4788999999999998752  1111    111123445555544 3211                 0   223444457


Q ss_pred             CcEEEEEccCCeEEeeeeCCCCCCeEEEEec-----CCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc-cceEEeee
Q 014154          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARH-----PTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL-NEVVFDSA  353 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~  353 (430)
                      ..++++...+.+..+..... ......+.+-     ..+..|++-..+|.|++|.+..-+.+..+.+.... ...+....
T Consensus       235 ~~irv~~~~~~k~~~K~~~~-~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss  313 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDD-PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS  313 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS--EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred             cceEEEeCCCCcccceeecc-ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence            78999999888876655532 2233344442     34567888889999999999998888876553211 12234566


Q ss_pred             ccccccccccCCCCc
Q 014154          354 FADKEVANAAADAPM  368 (430)
Q Consensus       354 ~s~~g~~~~~~~d~~  368 (430)
                      ++++|..+.-.....
T Consensus       314 is~~Gdi~~~~gpsE  328 (395)
T PF08596_consen  314 ISRNGDIFYWTGPSE  328 (395)
T ss_dssp             E-TTS-EEEE-SSSE
T ss_pred             ECCCCCEEEEeCccc
Confidence            778888743333334

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.16  E-value=0.00073  Score=59.21  Aligned_cols=246  Identities=15%  Similarity=0.150  Sum_probs=134.0

Q ss_pred             eecCCCceEEEEccCCCCCcceeeeecCCCCC-------CcceeeeeecCCCCCceeEEe--ecCCeEEEecCCCCcccc
Q 014154           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHS-------SNCVLAASIDDSQNDPLLAVA--RKNGLTDILNPLNGDLRV   89 (430)
Q Consensus        19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~g~~l~~g--~~dg~i~iwd~~~~~~~~   89 (430)
                      =|.....|.+||..+.     .......-+..       ....+++    +.||+++++-  +-.-.|.|.|+...+.+.
T Consensus        62 rG~RtDvv~~~D~~TL-----~~~~EI~iP~k~R~~~~~~~~~~~l----s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~  132 (342)
T PF06433_consen   62 RGERTDVVEIWDTQTL-----SPTGEIEIPPKPRAQVVPYKNMFAL----SADGKFLYVQNFTPATSVTVVDLAAKKVVG  132 (342)
T ss_dssp             EEEEEEEEEEEETTTT-----EEEEEEEETTS-B--BS--GGGEEE-----TTSSEEEEEEESSSEEEEEEETTTTEEEE
T ss_pred             cccceeEEEEEecCcC-----cccceEecCCcchheecccccceEE----ccCCcEEEEEccCCCCeEEEEECCCCceee
Confidence            3556668899999885     33332221111       1112222    5567777763  444668888988888777


Q ss_pred             eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (430)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~  169 (430)
                      ++..-          ..  ..+++..+       ..+.+.+.||.+.-..+.......   ...-.+|+.........-+
T Consensus       133 ei~~P----------GC--~~iyP~~~-------~~F~~lC~DGsl~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~  190 (342)
T PF06433_consen  133 EIDTP----------GC--WLIYPSGN-------RGFSMLCGDGSLLTVTLDADGKEA---QKSTKVFDPDDDPLFEHPA  190 (342)
T ss_dssp             EEEGT----------SE--EEEEEEET-------TEEEEEETTSCEEEEEETSTSSEE---EEEEEESSTTTS-B-S--E
T ss_pred             eecCC----------CE--EEEEecCC-------CceEEEecCCceEEEEECCCCCEe---EeeccccCCCCcccccccc
Confidence            76541          22  34445433       467778888888777776332211   0112344443333333445


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeEe--eCCCC-CCCCCCcCCcceeEEEEeecCCCCEEEEEeC--------C--
Q 014154          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWT--AKPPP-KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--------D--  236 (430)
Q Consensus       170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--------d--  236 (430)
                      +...+..++.-+.+|.|+-.|+........  ..... .+...-.-++.-.-+++  ++..++|++--.        |  
T Consensus       191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~--~~~~~rlyvLMh~g~~gsHKdpg  268 (342)
T PF06433_consen  191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY--HAASGRLYVLMHQGGEGSHKDPG  268 (342)
T ss_dssp             EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE--ETTTTEEEEEEEE--TT-TTS-E
T ss_pred             eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee--ccccCeEEEEecCCCCCCccCCc
Confidence            555666777789999999998875443211  11100 00000011122344666  444444443211        1  


Q ss_pred             CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC-EEEEEe-CCCcEEEEEccCCeEEeeeeCC
Q 014154          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGN-GSGDLASVDIRTGKLLGCFIGK  299 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~-~d~~i~iwd~~~~~~~~~~~~~  299 (430)
                      ..|.++|+.+.++ +..+... .++.+|..+.+.+ +|++.+ .++.|.+||..+|+.+.++..-
T Consensus       269 teVWv~D~~t~kr-v~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  269 TEVWVYDLKTHKR-VARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EEEEEEETTTTEE-EEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             eEEEEEECCCCeE-EEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence            1488889998664 6666642 4678999998775 555544 5789999999999999888753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.15  E-value=0.0031  Score=60.02  Aligned_cols=102  Identities=9%  Similarity=-0.067  Sum_probs=68.1

Q ss_pred             cceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCc-----------ceEEEeecCCCeEEEEecCCCCEEEEEeCCCc
Q 014154          214 TWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRR-----------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD  281 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~-----------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~  281 (430)
                      .....+.+  +|||+++++++ .+.+|.|+|+...+.           .+...... ..-...+|.++|+...+-.-|..
T Consensus       321 KsPHGV~v--SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsq  397 (635)
T PRK02888        321 KNPHGVNT--SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQ  397 (635)
T ss_pred             CCccceEE--CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecce
Confidence            45677888  89999877765 488999999987442           12222222 23345789999988888889999


Q ss_pred             EEEEEccC----------CeEEeeeeCCCCCCeEEEE------ecCCCCeEEEEe
Q 014154          282 LASVDIRT----------GKLLGCFIGKCSGSIRSIA------RHPTLPIIASCG  320 (430)
Q Consensus       282 i~iwd~~~----------~~~~~~~~~~~~~~v~~i~------~~~~~~~l~s~~  320 (430)
                      |..||+.+          ...+..+..| -.+ -.+.      -.|+|++|++..
T Consensus       398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~-y~p-gh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        398 IVKWNIEAAIRAYKGEKVDPIVQKLDVH-YQP-GHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             eEEEehHHHHHHhccccCCcceecccCC-Ccc-ceeeecCCCcCCCCCCEEEEcc
Confidence            99999876          3345545443 211 1122      257888888763

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.06  E-value=0.0006  Score=65.55  Aligned_cols=284  Identities=11%  Similarity=0.039  Sum_probs=152.1

Q ss_pred             eeecCCCCCceeEEee----cCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154           57 ASIDDSQNDPLLAVAR----KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (430)
Q Consensus        57 ~~~~~~p~g~~l~~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (430)
                      .+|  +|..+++|+++    ..|.|.||- .+|++......  |       -..++++|.+. .       -.++.+-.-
T Consensus        21 ~SW--HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P-------~hatSLCWHpe-~-------~vLa~gwe~   80 (1416)
T KOG3617|consen   21 SSW--HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--P-------VHATSLCWHPE-E-------FVLAQGWEM   80 (1416)
T ss_pred             ccc--CCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc--c-------eehhhhccChH-H-------HHHhhcccc
Confidence            345  88889998876    558899984 57775544332  0       02233444443 3       356667777


Q ss_pred             CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee----------------
Q 014154          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK----------------  196 (430)
Q Consensus       133 g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~----------------  196 (430)
                      |.+.||.-...         ........|..+|..+.|+++|+.++++..-|.|.+|.+..-..                
T Consensus        81 g~~~v~~~~~~---------e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt  151 (1416)
T KOG3617|consen   81 GVSDVQKTNTT---------ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT  151 (1416)
T ss_pred             ceeEEEecCCc---------eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceee
Confidence            78888875422         22333446778999999999999999999999999998762111                


Q ss_pred             --eEeeCCCCCCCC------------CCc-CCcc-----eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee
Q 014154          197 --IWTAKPPPKNSL------------GIF-TPTW-----FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (430)
Q Consensus       197 --~~~~~~~~~~~~------------~~~-~~~~-----v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  256 (430)
                        .+.+.....+..            .+. ...|     -.+..-...|+|..++.++.+|+|+..|-....  ....+.
T Consensus       152 l~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~~--~~V~k~  229 (1416)
T KOG3617|consen  152 LWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGRQ--RTVHKL  229 (1416)
T ss_pred             EEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCcE--EEEEEc
Confidence              111111100000            000 0000     011111124677888888999999888865422  222222


Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc-CC---------------eE---------Eee------eeCCCCCCeE
Q 014154          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TG---------------KL---------LGC------FIGKCSGSIR  305 (430)
Q Consensus       257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~---------------~~---------~~~------~~~~~~~~v~  305 (430)
                      . +. ..+-|.+-...+++-..+-++.++-.. +|               ..         ...      +-......++
T Consensus       230 d-S~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~  307 (1416)
T KOG3617|consen  230 D-SE-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGIL  307 (1416)
T ss_pred             c-ch-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceE
Confidence            1 11 112222222222222222222222110 00               00         000      1001145799


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCCC----ce-eeEEEeec--cccceEEeeeccccccccccCCCCceEecC
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKTR----QL-LSAVFLKQ--HLNEVVFDSAFADKEVANAAADAPMLEIQN  373 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~----~~-~~~~~~~~--~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~  373 (430)
                      +++++..+..|..|...|.+.+|--...    .+ +..+.+.+  .....|..+.|.|--..+.......+.+..
T Consensus       308 c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~  382 (1416)
T KOG3617|consen  308 CMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLG  382 (1416)
T ss_pred             EEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeec
Confidence            9999999999999999999999953221    12 22222332  234457889999866654444444444443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.05  E-value=0.016  Score=57.20  Aligned_cols=330  Identities=13%  Similarity=0.030  Sum_probs=176.2

Q ss_pred             CCCcccCCCCCCCcceeeecCCCceEEEEccCCCCCcceeee--ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEE
Q 014154            2 PRTTTLECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVE--RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDI   79 (430)
Q Consensus         2 ~~~~~~~~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~i   79 (430)
                      ||..-+++..-....|+++..||.+.-+-+..+. +...-.+  .++  ..++....|+.  . .++.+++.+. .-..+
T Consensus       583 PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t-g~lsd~Kk~~lG--t~P~~Lr~f~s--k-~~t~vfa~sd-rP~vi  655 (1096)
T KOG1897|consen  583 PRSILLTTFEGDIHYLLVALGDGALLYFVLDINT-GQLSDRKKVTLG--TQPISLRTFSS--K-SRTAVFALSD-RPTVI  655 (1096)
T ss_pred             chheeeEEeeccceEEEEEcCCceEEEEEEEccc-ceEccccccccC--CCCcEEEEEee--C-CceEEEEeCC-CCEEE
Confidence            5666666655556678889999999877665531 1111111  222  23433444443  1 2234444433 33333


Q ss_pred             ecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee
Q 014154           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV  159 (430)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~  159 (430)
                      |.. ++++..+--..         ..+..++-++....      ...++...++.+.+..++.-+        .+.+-.+
T Consensus       656 Y~~-n~kLv~spls~---------kev~~~c~f~s~a~------~d~l~~~~~~~l~i~tid~iq--------kl~irtv  711 (1096)
T KOG1897|consen  656 YSS-NGKLVYSPLSL---------KEVNHMCPFNSDAY------PDSLASANGGALTIGTIDEIQ--------KLHIRTV  711 (1096)
T ss_pred             Eec-CCcEEEeccch---------HHhhhhcccccccC------CceEEEecCCceEEEEecchh--------hcceeee
Confidence            432 34332211100         01111222222111      122333344555555554221        2222223


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeC-----------C---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          160 CASGTIAFSKVDISEKFSLFGGK-----------G---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~-----------d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                      .-+.....+++.+....+++.+.           .   ..++++|-++-+.+...+....+.     ...+.++.|.  .
T Consensus       712 pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~-----~~Si~s~~~~--~  784 (1096)
T KOG1897|consen  712 PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET-----ALSIISCKFT--D  784 (1096)
T ss_pred             cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce-----eeeeeeeeec--C
Confidence            33455556666654433333221           1   136777777665554433322111     1346666784  3


Q ss_pred             C-CCEEEEEeC----------CCcEEEEECCCCCcceEEEeec--CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154          226 D-HRKFVAGTN----------DHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (430)
Q Consensus       226 ~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  292 (430)
                      | +.++++|+.          .|.|.+|.+....+ +.....+  .+.+.++.. -+|++||.  -...|++|+..+.+.
T Consensus       785 d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~-L~~v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~e  860 (1096)
T KOG1897|consen  785 DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS-LELVAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERE  860 (1096)
T ss_pred             CCceEEEEEEEeeccCCCCcccceEEEEEEecCCc-eeeeeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccce
Confidence            4 667777753          57788887776332 3333222  345555543 25655543  466899999988877


Q ss_pred             EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC--CCceeeEEEeeccccceEEeeeccccccccccCCCCceE
Q 014154          293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK--TRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE  370 (430)
Q Consensus       293 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~  370 (430)
                      ++.-..+ ..++..+...-.+..++.|..-+.+.+--.+  .|.....  -+.-.....+++.+-.+..++.+..+|.+.
T Consensus       861 Lr~e~~~-~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev--ArD~~p~Wmtaveil~~d~ylgae~~gNlf  937 (1096)
T KOG1897|consen  861 LRIECNI-SNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV--ARDYNPNWMTAVEILDDDTYLGAENSGNLF  937 (1096)
T ss_pred             ehhhhcc-cCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe--ehhhCccceeeEEEecCceEEeecccccEE
Confidence            7666666 7788999998899999999887777665544  3334433  222335567788888788888888888888


Q ss_pred             ecCCCC
Q 014154          371 IQNGND  376 (430)
Q Consensus       371 ~~~~~~  376 (430)
                      +-..+.
T Consensus       938 ~v~~d~  943 (1096)
T KOG1897|consen  938 TVRKDS  943 (1096)
T ss_pred             EEEecC
Confidence            877664

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.02  E-value=0.00023  Score=69.89  Aligned_cols=145  Identities=16%  Similarity=0.114  Sum_probs=96.9

Q ss_pred             CEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee---cCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154          175 KFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS---IDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       175 ~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      ++|+.- .....|+-.|++.|+.+.+...+...        .|..++-..   .-.....+.|-.+..+..||++-....
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~--------~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k  565 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI--------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK  565 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCCCc--------ceeEecccccccccCCCceEEEECCCceEEeccCCCCCc
Confidence            344433 34578999999999999888776421        122222100   002345677888999999999964322


Q ss_pred             eEEEee----cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEE
Q 014154          251 VMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (430)
Q Consensus       251 ~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  326 (430)
                      +..-..    .....+|++-+.+| +||+|+.+|.||+||--..+....+.+- ..+|..|..+.||++|+..+ +..|.
T Consensus       566 ~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l-G~pI~~iDvt~DGkwilaTc-~tyLl  642 (794)
T PF08553_consen  566 LVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL-GDPIIGIDVTADGKWILATC-KTYLL  642 (794)
T ss_pred             eeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC-CCCeeEEEecCCCcEEEEee-cceEE
Confidence            222122    23456788877776 8999999999999994333333445565 78999999999999987665 45677


Q ss_pred             EEEC
Q 014154          327 FWDI  330 (430)
Q Consensus       327 iwd~  330 (430)
                      ++++
T Consensus       643 Li~t  646 (794)
T PF08553_consen  643 LIDT  646 (794)
T ss_pred             EEEE
Confidence            7775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.91  E-value=0.0051  Score=55.55  Aligned_cols=183  Identities=11%  Similarity=0.096  Sum_probs=105.6

Q ss_pred             CCEEEEEeC---------C-CeEEEEECCCC----eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154          174 EKFSLFGGK---------G-VEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (430)
Q Consensus       174 ~~~l~~~~~---------d-~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  239 (430)
                      ..+|++|+.         . |.|.+|++...    ..+..+....       ..+.|++++-.   ++. |+++ ..+.|
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-------~~g~V~ai~~~---~~~-lv~~-~g~~l  109 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-------VKGPVTAICSF---NGR-LVVA-VGNKL  109 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-------ESS-EEEEEEE---TTE-EEEE-ETTEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-------ecCcceEhhhh---CCE-EEEe-ecCEE
Confidence            567777664         2 88999999874    1222111111       12668888773   444 4443 45899


Q ss_pred             EEEECCCCCcceEEEeec--CCCeEEEEecCCCCEEEEEeCCCcEEEEEccC-CeEEeeee-CCCCCCeEEEEecCCCCe
Q 014154          240 RLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFI-GKCSGSIRSIARHPTLPI  315 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~-~~~~~~v~~i~~~~~~~~  315 (430)
                      .+|++...+. +.....+  ...+.++...  +++|++|..-..+.++..+. .+.+..+. ......++++.|-+++..
T Consensus       110 ~v~~l~~~~~-l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~  186 (321)
T PF03178_consen  110 YVYDLDNSKT-LLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDT  186 (321)
T ss_dssp             EEEEEETTSS-EEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSE
T ss_pred             EEEEccCccc-chhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcE
Confidence            9999987652 2222222  2355665554  56999999888888875443 33222222 222456889999877778


Q ss_pred             EEEEeCCCcEEEEECCC-------Cc-eeeEEEeeccccceEEee---ecccc--c-------cccccCCCCceEec
Q 014154          316 IASCGLDSYLRFWDIKT-------RQ-LLSAVFLKQHLNEVVFDS---AFADK--E-------VANAAADAPMLEIQ  372 (430)
Q Consensus       316 l~s~~~dg~i~iwd~~~-------~~-~~~~~~~~~~~~~~v~~~---~~s~~--g-------~~~~~~~d~~i~~~  372 (430)
                      ++.+..+|.|.++....       +. .+... ..-|.+..++++   ++.|.  +       .++.++.+|.|.+.
T Consensus       187 ~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~-~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  187 IIVGDKDGNLFVLRYNPEIPNSRDGDPKLERI-SSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEETTSEEEEEEE-SS-SSTTTTTTBEEEE-EEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEcCCCeEEEEEECCCCcccccccccceeE-EEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            99999999999998762       22 22221 223455666766   55552  1       14778888988854

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.91  E-value=3.7e-06  Score=77.54  Aligned_cols=188  Identities=15%  Similarity=0.166  Sum_probs=117.1

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEe----CCCeEEEEECCCCee--
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGG----KGVEVNVWDLDKCEK--  196 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~d~~i~~~d~~~~~~--  196 (430)
                      ..+.+|..+|.+.+..+....+       .-..+...+....++++|++ +.+.||.|-    .|..+.|||+.++-.  
T Consensus        71 cIlavG~atG~I~l~s~r~~hd-------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvP  143 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHD-------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVP  143 (783)
T ss_pred             hhhhhccccCceEEeecCCccc-------ccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCC
Confidence            3566677778887777654432       11222334456788999988 556676653    256799999987521  


Q ss_pred             --eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEE
Q 014154          197 --IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNI  273 (430)
Q Consensus       197 --~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l  273 (430)
                        ...+...        ......+++|  -.+..++++|.....++++|++...  .......+..+..+...| .++++
T Consensus       144 ke~~~fs~~--------~l~gqns~cw--lrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  144 KESPLFSSS--------TLDGQNSVCW--LRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNYF  211 (783)
T ss_pred             ccccccccc--------cccCcccccc--ccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCce
Confidence              1111110        1133457777  5778889999999999999999422  222222334567777888 66677


Q ss_pred             EEEeCCCcEEEEE-ccCCeE-EeeeeCC---CCCCeEEEEecCCCC-eEEEEeC-CCcEEEEECC
Q 014154          274 YIGNGSGDLASVD-IRTGKL-LGCFIGK---CSGSIRSIARHPTLP-IIASCGL-DSYLRFWDIK  331 (430)
Q Consensus       274 ~~~~~d~~i~iwd-~~~~~~-~~~~~~~---~~~~v~~i~~~~~~~-~l~s~~~-dg~i~iwd~~  331 (430)
                      ++- .||.|.+|| .++-+- +..+...   ....+..++|+|... .+++.+. .++|+++|+.
T Consensus       212 cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  212 CSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            665 499999999 444332 2222211   023489999999542 4555554 4789999885

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.89  E-value=0.022  Score=53.29  Aligned_cols=217  Identities=10%  Similarity=0.023  Sum_probs=111.7

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      ...+++  +|+|+++++ ..+|.-.|+.....+....  +           .-....|.. .        +.+++....+
T Consensus        35 p~~ls~--npngr~v~V-~g~geY~iyt~~~~r~k~~--G-----------~g~~~vw~~-~--------n~yAv~~~~~   89 (443)
T PF04053_consen   35 PQSLSH--NPNGRFVLV-CGDGEYEIYTALAWRNKAF--G-----------SGLSFVWSS-R--------NRYAVLESSS   89 (443)
T ss_dssp             -SEEEE---TTSSEEEE-EETTEEEEEETTTTEEEEE--E-----------E-SEEEE-T-S--------SEEEEE-TTS
T ss_pred             CeeEEE--CCCCCEEEE-EcCCEEEEEEccCCccccc--C-----------ceeEEEEec-C--------ccEEEEECCC
Confidence            456666  889998888 5678888887433322111  1           111233333 2        4666666677


Q ss_pred             eeEEEE-eeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154          134 KASMRS-IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (430)
Q Consensus       134 ~~~v~~-~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  212 (430)
                      .+.|+. +...         .++...+.  ..+..+-.   |.+|+..+.+ .|.+||+++++.+.++..          
T Consensus        90 ~I~I~kn~~~~---------~~k~i~~~--~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v----------  144 (443)
T PF04053_consen   90 TIKIYKNFKNE---------VVKSIKLP--FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV----------  144 (443)
T ss_dssp             -EEEEETTEE----------TT-----S--S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----------
T ss_pred             eEEEEEcCccc---------cceEEcCC--cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec----------
Confidence            777753 2211         11112211  12222222   7777766655 899999999999999876          


Q ss_pred             CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC----------CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (430)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i  282 (430)
                       ..|..+.|  ++++.+++..+.+ .+.+++....          +..+..+..-...|.+..|..+  .++-.+.. .|
T Consensus       145 -~~vk~V~W--s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~l  217 (443)
T PF04053_consen  145 -SAVKYVIW--SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HL  217 (443)
T ss_dssp             --E-EEEEE---TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EE
T ss_pred             -CCCcEEEE--ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eE
Confidence             34789999  8999999988755 6777765532          0023444332467888888765  33333333 55


Q ss_pred             EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      +.  +..|+.- .+..- ..+++-+...|....+.....|+.|..+.+.
T Consensus       218 kY--l~~Ge~~-~i~~l-d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  218 KY--LVNGETG-IIAHL-DKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EE--EETTEEE-EEEE--SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             EE--EEcCCcc-eEEEc-CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            55  4455532 22221 4567777777877788888888888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=8.6e-05  Score=68.76  Aligned_cols=94  Identities=11%  Similarity=0.104  Sum_probs=78.1

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeE-EEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~-~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  292 (430)
                      ..+.-+.|  +|.-.+||++..+|.|.+..++. + .+.++..|...++ +++|.|||++|++|-.||+|++.|..++..
T Consensus        21 ~~i~~~ew--nP~~dLiA~~t~~gelli~R~n~-q-Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   21 INIKRIEW--NPKMDLIATRTEKGELLIHRLNW-Q-RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cceEEEEE--cCccchhheeccCCcEEEEEecc-c-eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            44677888  88889999999999999999984 3 3778887777777 999999999999999999999999999988


Q ss_pred             EeeeeCCCCCCeEEEEecC
Q 014154          293 LGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       293 ~~~~~~~~~~~v~~i~~~~  311 (430)
                      +..+.......|.++.|.+
T Consensus        97 l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   97 LVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeccccccccchheeeccc
Confidence            7763322256788888864

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.87  E-value=0.0016  Score=47.04  Aligned_cols=90  Identities=10%  Similarity=0.128  Sum_probs=66.9

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      +.|++|+.|..|+||+-  ...+.++...         +.+..+.-...         +.++.+..+|++-+|+-     
T Consensus        16 ~eLlvGs~D~~IRvf~~--~e~~~Ei~e~---------~~v~~L~~~~~---------~~F~Y~l~NGTVGvY~~-----   70 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKG--DEIVAEITET---------DKVTSLCSLGG---------GRFAYALANGTVGVYDR-----   70 (111)
T ss_pred             ceEEEecCCcEEEEEeC--CcEEEEEecc---------cceEEEEEcCC---------CEEEEEecCCEEEEEeC-----
Confidence            57999999999999973  4555555432         45555544433         58999999999999963     


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcC-C--C-CEEEEEeCCCeEE
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDI-S--E-KFSLFGGKGVEVN  187 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~-~--~-~~l~~~~~d~~i~  187 (430)
                             ..++|+......+.++.+.. +  | ..|++|-.+|.|-
T Consensus        71 -------~~RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 -------SQRLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             -------cceeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence                   78899999888888887754 2  2 3688888888764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.86  E-value=9.7e-05  Score=69.29  Aligned_cols=109  Identities=7%  Similarity=0.005  Sum_probs=85.3

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE---E--eeeeC
Q 014154          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---L--GCFIG  298 (430)
Q Consensus       224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~---~--~~~~~  298 (430)
                      +..+.+++.|+.-|.+++|+-..+........+..+.+..+..|++..++|+|+..|.|.++-+....+   .  ..+..
T Consensus        42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~  121 (726)
T KOG3621|consen   42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDK  121 (726)
T ss_pred             ecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccc
Confidence            457889999999999999998876543334444556677778899999999999999999998876432   1  12222


Q ss_pred             CCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       299 ~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      .|...|++++|++++..+++|...|.|..-.+.+
T Consensus       122 ~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  122 SHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            2378999999999999999999999998887766

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.85  E-value=0.0011  Score=61.68  Aligned_cols=140  Identities=10%  Similarity=0.057  Sum_probs=81.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE-
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY-  242 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw-  242 (430)
                      ....+.++|+++++++ +.+|.-.+|.....+....              +.....+|  .++ +.+|+-...+.|.++ 
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~--------------G~g~~~vw--~~~-n~yAv~~~~~~I~I~k   95 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF--------------GSGLSFVW--SSR-NRYAVLESSSTIKIYK   95 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE--------------EE-SEEEE---TS-SEEEEE-TTS-EEEEE
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc--------------CceeEEEE--ecC-ccEEEEECCCeEEEEE
Confidence            4678999999999998 5566888887443333222              23455677  454 456666678889996 


Q ss_pred             ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (430)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d  322 (430)
                      ++.. . ....+... ..+..|-.   |.+|+..+.+ .|.+||..+++.+.++...   +|..+.|++++.+++..+.+
T Consensus        96 n~~~-~-~~k~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~  165 (443)
T PF04053_consen   96 NFKN-E-VVKSIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKD  165 (443)
T ss_dssp             TTEE---TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-
T ss_pred             cCcc-c-cceEEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCC
Confidence            3332 2 12233322 23444432   7777777554 8999999999999999853   48999999999999988766


Q ss_pred             CcEEEEECCC
Q 014154          323 SYLRFWDIKT  332 (430)
Q Consensus       323 g~i~iwd~~~  332 (430)
                       .+.|++...
T Consensus       166 -~i~il~~~~  174 (443)
T PF04053_consen  166 -SIYILKYNL  174 (443)
T ss_dssp             -SEEEEEE-H
T ss_pred             -eEEEEEecc
Confidence             588877543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.83  E-value=0.0014  Score=60.82  Aligned_cols=178  Identities=12%  Similarity=0.049  Sum_probs=108.3

Q ss_pred             CceEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCC
Q 014154          163 GTIAFSKVDISEKFSLFGG---KG-VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH  237 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~---~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg  237 (430)
                      ..+..-+|+|++..++...   .. ..++++++++++....+...          ..-...+|  +|||+.|+.+. .||
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~----------g~~~~P~f--spDG~~l~f~~~rdg  260 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN----------GNNGAPAF--SPDGSKLAFSSSRDG  260 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC----------CccCCccC--CCCCCEEEEEECCCC
Confidence            4456667888887765442   22 46899999887665444321          12233466  89998776554 555


Q ss_pred             c--EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CC--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          238 Q--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       238 ~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      .  |.++|+....  ...+....+.-..-.|+|||++|+-.+. .|  .|.++|+..+... .+... ...-..-.|+||
T Consensus       261 ~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~-~~~~~~p~~Spd  336 (425)
T COG0823         261 SPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFS-GGGNSNPVWSPD  336 (425)
T ss_pred             CccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeecc-CCCCcCccCCCC
Confidence            4  6677777644  3334443344446789999998876653 34  3777777666552 22222 122226789999


Q ss_pred             CCeEEEEeCC-Cc--EEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          313 LPIIASCGLD-SY--LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       313 ~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      |++|+..+.. |.  |.+.|+.++..+..+.   . ........|.++|..
T Consensus       337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt---~-~~~~e~ps~~~ng~~  383 (425)
T COG0823         337 GDKIVFESSSGGQWDIDKNDLASGGKIRILT---S-TYLNESPSWAPNGRM  383 (425)
T ss_pred             CCEEEEEeccCCceeeEEeccCCCCcEEEcc---c-cccCCCCCcCCCCce
Confidence            9998887743 43  6777776666444321   1 222346678888877

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.0018  Score=56.98  Aligned_cols=245  Identities=11%  Similarity=0.050  Sum_probs=123.0

Q ss_pred             CCCCCcceeeeeecCCCCCc-eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154           47 DPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (430)
Q Consensus        47 ~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  125 (430)
                      .+...+.-++|+.    ..+ +|..++.+..|+|.|+++......+..+         ..+.+ ..|+.+..      ..
T Consensus       191 ~~g~~IrdlafSp----~~~GLl~~asl~nkiki~dlet~~~vssy~a~---------~~~wS-C~wDlde~------h~  250 (463)
T KOG1645|consen  191 GEGSFIRDLAFSP----FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY---------NQIWS-CCWDLDER------HV  250 (463)
T ss_pred             ccchhhhhhccCc----cccceeeeeccCceEEEEecccceeeeheecc---------CCcee-eeeccCCc------ce
Confidence            3444544455544    333 6778999999999999888777666543         34443 34554432      48


Q ss_pred             EEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE------EcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK------VDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~------~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                      +.+|...|.+.|+++..........-..      ....+|..++      ..+.+.+|+....+  +..|.+.-...   
T Consensus       251 IYaGl~nG~VlvyD~R~~~~~~~e~~a~------~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~---  319 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPEGPLMELVAN------VTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAE---  319 (463)
T ss_pred             eEEeccCceEEEEEccCCCchHhhhhhh------hccCcceeecccCccccccccceEEeeehh--hhhhhhhcccc---
Confidence            8999999999999998765411100000      0112222222      22345555544433  44555432111   


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-C------cEEE-EECCCCCcceE-EEeec-CC------CeEE
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-H------QVRL-YDTSAQRRPVM-SFDFR-ET------PIKA  263 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g------~i~i-wd~~~~~~~~~-~~~~~-~~------~i~~  263 (430)
                         +......+..++...++.+  .+..+.++..... .      .|-. -|...+. ++. .-..+ .+      .-..
T Consensus       320 ---~~p~vlele~pG~cismqy--~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~-pVc~~r~~~~Gs~~~kl~t~~a  393 (463)
T KOG1645|consen  320 ---CLPCVLELEPPGICISMQY--HGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF-PVCGKRRTYFGSKQTKLSTTQA  393 (463)
T ss_pred             ---CCCcccccCCCcceeeeee--cCccceEEEEecCCCCCccceeeeeeeccccCc-eeeeecccccCCcccccccccc
Confidence               0011111111234445555  3333333322221 0      0111 1111111 111 11111 00      0011


Q ss_pred             EEecCCCCEEE-EEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC-CC-CeEEEEeCCCcEEEEECC
Q 014154          264 VAEEPDSFNIY-IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TL-PIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       264 ~~~sp~~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~-~~l~s~~~dg~i~iwd~~  331 (430)
                      +.-.++.++|+ +|...+.+.+||..+++.++++..  ..+|..++... ++ .+|++-. |..++||..+
T Consensus       394 i~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  394 IRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eeccccccEEEEecCCcceeEEeccchhheeeeccc--CcceeecceeecCCcchhhhee-cceEEEEecC
Confidence            21234455554 444558899999999999999987  47888877654 33 4666554 5568888654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.0097  Score=54.98  Aligned_cols=194  Identities=14%  Similarity=0.102  Sum_probs=130.5

Q ss_pred             eEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC---CCcEE
Q 014154          165 IAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVR  240 (430)
Q Consensus       165 i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~  240 (430)
                      -..+++++.++.++. ...++.|.+.|..+..........          .....+++  ++++..+.++..   ++.+.
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG----------~~P~~~~~--~~~~~~vYV~n~~~~~~~vs  143 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG----------LGPVGLAV--DPDGKYVYVANAGNGNNTVS  143 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec----------cCCceEEE--CCCCCEEEEEecccCCceEE
Confidence            346677777775554 444589999997776665554432          13566788  888877776665   68899


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEe-e----eeCCCCCCeEEEEecCCCC
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLG-C----FIGKCSGSIRSIARHPTLP  314 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~-~----~~~~~~~~v~~i~~~~~~~  314 (430)
                      +.|..+... .........+ ..++++|+|+.++... .++.|.+.|........ .    +..  ......+.++|++.
T Consensus       144 vid~~t~~~-~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~--~~~P~~i~v~~~g~  219 (381)
T COG3391         144 VIDAATNKV-TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV--GTGPAGIAVDPDGN  219 (381)
T ss_pred             EEeCCCCeE-EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc--CCCCceEEECCCCC
Confidence            999888654 4444443345 8899999999777665 78999999987666553 1    222  23457789999998


Q ss_pred             eEEEEeCC---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154          315 IIASCGLD---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND  376 (430)
Q Consensus       315 ~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~  376 (430)
                      ++......   +.+...|..++.........+. . ....+.++|+|..  +.-...+.+.+-+...
T Consensus       220 ~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         220 RVYVANDGSGSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             EEEEEeccCCCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            76655433   5899999998887765212222 1 2367899999998  3334446666665544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.76  E-value=0.0065  Score=54.84  Aligned_cols=179  Identities=15%  Similarity=0.097  Sum_probs=104.4

Q ss_pred             eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee-cC----CCCEEEEEeC----------CCcEEEEECCCC-C
Q 014154          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-ID----DHRKFVAGTN----------DHQVRLYDTSAQ-R  248 (430)
Q Consensus       185 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~----~~~~l~s~~~----------dg~i~iwd~~~~-~  248 (430)
                      .|++.|..+.+.+..+.-...        ..+.+++... ..    ...+|++|+.          .|.|.++++... .
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~--------E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~   74 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPN--------EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE   74 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETT--------EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--
T ss_pred             EEEEEeCCCCeEEEEEECCCC--------ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc
Confidence            567777766655544433221        2344333321 21    2457776653          288999999873 1


Q ss_pred             --cceEEE--eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe-EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154          249 --RPVMSF--DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       249 --~~~~~~--~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                        ..+..+  ....++|++++-- ++ +|+++. .+.|.+|++...+ ....-.-+....+.++...  +.+++.|....
T Consensus        75 ~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~  149 (321)
T PF03178_consen   75 NNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMK  149 (321)
T ss_dssp             ---EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSS
T ss_pred             cceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEccc
Confidence              112211  2346789998765 34 455554 5889999998877 4433332213466666654  56899998888


Q ss_pred             cEEEEECCC-CceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          324 YLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       324 ~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      .+.++..+. ...+..+ -.......++++.|-+++.. +.+..+|.+.++..++.
T Consensus       150 sv~~~~~~~~~~~l~~v-a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~  204 (321)
T PF03178_consen  150 SVSLLRYDEENNKLILV-ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPE  204 (321)
T ss_dssp             SEEEEEEETTTE-EEEE-EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS
T ss_pred             CEEEEEEEccCCEEEEE-EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCC
Confidence            888875543 2323332 22233455788888866644 88999999999988753

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=0.00019  Score=66.50  Aligned_cols=93  Identities=15%  Similarity=0.128  Sum_probs=75.6

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE-EEEecCCCCeEEEEeCCCcEEEEECCCCceee
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR-SIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  337 (430)
                      ..|.-+.|+|.-.+||.+..+|.|.++-+. .+.+.++.-+ ...++ +++|.|||+.|+.|-.||+|++.|+.++..+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p-~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP-GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC-CCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            467889999999999999999999999987 7778888865 55666 99999999999999999999999999998887


Q ss_pred             EEEeeccccceEEeeecc
Q 014154          338 AVFLKQHLNEVVFDSAFA  355 (430)
Q Consensus       338 ~~~~~~~~~~~v~~~~~s  355 (430)
                      .+.  -.....|..+-|+
T Consensus        99 ~~~--~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFL--FSVETDISKGIWD  114 (665)
T ss_pred             ccc--cccccchheeecc
Confidence            631  1223334555564

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.00043  Score=65.11  Aligned_cols=117  Identities=13%  Similarity=0.218  Sum_probs=85.3

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ..+.--+++..+.+++.|+.-|.+++|+-..+..... +....       ...+..+..  +++..++|.|+..|.|.++
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-~~~~~-------~~~~~~~~v--s~~e~lvAagt~~g~V~v~  103 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-KNEGA-------TGITCVRSV--SSVEYLVAAGTASGRVSVF  103 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-cccCc-------cceEEEEEe--cchhHhhhhhcCCceEEee
Confidence            4455556677899999999999999999876554322 22110       022333444  7888899999999999999


Q ss_pred             ECCCCCcceEEE-----eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154          243 DTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (430)
Q Consensus       243 d~~~~~~~~~~~-----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~  289 (430)
                      -++....+-..+     ..|...|++++|++++..+++|...|.|.+-.+..
T Consensus       104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            888643322221     12567899999999999999999999999887765

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=0.0074  Score=50.97  Aligned_cols=106  Identities=16%  Similarity=0.142  Sum_probs=74.4

Q ss_pred             CceEEEEEcCC-CCEEEEEeCCCe-EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----
Q 014154          163 GTIAFSKVDIS-EKFSLFGGKGVE-VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----  236 (430)
Q Consensus       163 ~~i~~~~~~~~-~~~l~~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----  236 (430)
                      .....++++|. ..-++.+-.-|+ ..++|....+....+......       ...-.-.|  +|+|.+|...-.|    
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R-------HfyGHGvf--s~dG~~LYATEndfd~~  138 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR-------HFYGHGVF--SPDGRLLYATENDFDPN  138 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc-------eeeccccc--CCCCcEEEeecCCCCCC
Confidence            44566888884 455666666665 568898887766655543322       11223456  8999988875443    


Q ss_pred             -CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          237 -HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       237 -g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                       |.|-|||.+..-..+-.+..|.-.-..+.+.+||+.++.+.
T Consensus       139 rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan  180 (366)
T COG3490         139 RGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN  180 (366)
T ss_pred             CceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence             67999999976655677888877788899999999998774

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.70  E-value=1.1e-05  Score=74.65  Aligned_cols=200  Identities=15%  Similarity=0.141  Sum_probs=125.3

Q ss_pred             CceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeee-EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe----C
Q 014154          163 GTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT----N  235 (430)
Q Consensus       163 ~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----~  235 (430)
                      +.+.|+++.-  +...+++|..+|.|.+-.++...-. +++.        ..+..+.++++|. .-|.+.||.|-    .
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~t--------p~~ar~Ct~lAwn-eLDtn~LAagldkhrn  127 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVT--------PGYARPCTSLAWN-ELDTNHLAAGLDKHRN  127 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceec--------ccccccccccccc-cccHHHHHhhhhhhcc
Confidence            5566776654  3457888999999999887643221 1211        1123668899994 33556777764    3


Q ss_pred             CCcEEEEECCCCC-cceEE--Eee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEec
Q 014154          236 DHQVRLYDTSAQR-RPVMS--FDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARH  310 (430)
Q Consensus       236 dg~i~iwd~~~~~-~~~~~--~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~  310 (430)
                      |..+.|||+.+.- .|...  +.. ......+++|-.+.+++++|.....+.++|+|.... ...+.   +..+..+...
T Consensus       128 ds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVd  204 (783)
T KOG1008|consen  128 DSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVD  204 (783)
T ss_pred             cCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceec
Confidence            5679999998741 12111  111 234556888988889999999999999999984332 22222   3456777788


Q ss_pred             C-CCCeEEEEeCCCcEEEEEC-CCC-ceeeEEEeecc--ccceEEeeecccc--ccc-cccCCCCceEecCCCC
Q 014154          311 P-TLPIIASCGLDSYLRFWDI-KTR-QLLSAVFLKQH--LNEVVFDSAFADK--EVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       311 ~-~~~~l~s~~~dg~i~iwd~-~~~-~~~~~~~~~~~--~~~~v~~~~~s~~--g~~-~~~~~d~~i~~~~~~~  376 (430)
                      | .+.++++-. ||.|-+||. .+- .++..+ ++..  ....+..++|+|.  |.+ +..-+.++|+.|+.-.
T Consensus       205 p~~~nY~cs~~-dg~iAiwD~~rnienpl~~i-~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  205 PFSPNYFCSNS-DGDIAIWDTYRNIENPLQII-LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCCCCceeccc-cCceeeccchhhhccHHHHH-hhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            8 667777665 999999994 221 122211 1111  1123688999995  444 4445667888888654

>smart00320 WD40 WD40 repeats

Probab=97.69  E-value=0.00015  Score=41.42  Aligned_cols=39  Identities=33%  Similarity=0.623  Sum_probs=33.7

Q ss_pred             CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       290 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd  329 (430)
                      ++++..+..| ...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGH-TGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEec-CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3456667776 78999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.69  E-value=0.042  Score=50.56  Aligned_cols=83  Identities=11%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC-----------------CC-eEEEEe
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT-----------------LP-IIASCG  320 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~-----------------~~-~l~s~~  320 (430)
                      ..+.+|+.+|++++.++...-|.|.++|+.++..++.++|...+.+.-+.....                 .. +++-+-
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            357789999999988888777999999999999888888763333222211111                 11 244556


Q ss_pred             CCCcEEEEECCCCceeeEEEe
Q 014154          321 LDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       321 ~dg~i~iwd~~~~~~~~~~~~  341 (430)
                      .-|.|.||.+++|..+..+..
T Consensus       388 rRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  388 RRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCCeEEEEecCCCCEEEEEEe
Confidence            789999999999999988643

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.67  E-value=7.5e-05  Score=60.56  Aligned_cols=106  Identities=18%  Similarity=0.246  Sum_probs=66.7

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEE-EEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCC-C
Q 014154          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS-G  302 (430)
Q Consensus       225 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~  302 (430)
                      .-+..+++|+.+|.|.+|...........+......|.+ |.-..++.+..+++.||.|+.|++.-++.+...-.| . .
T Consensus        68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h-~~~  146 (238)
T KOG2444|consen   68 TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQH-NFE  146 (238)
T ss_pred             ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccc-cCC
Confidence            345679999999999999987432212222222223333 222345568889999999999999888887666555 4 4


Q ss_pred             CeEEEEecCCCCeEEEE--eCCCcEEEEECC
Q 014154          303 SIRSIARHPTLPIIASC--GLDSYLRFWDIK  331 (430)
Q Consensus       303 ~v~~i~~~~~~~~l~s~--~~dg~i~iwd~~  331 (430)
                      ++..+..+..+++++++  |.|..++.|++.
T Consensus       147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             CcceeEEecCCceEEeeccccchhhhhcchh
Confidence            44444444455555555  555556666554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.66  E-value=0.029  Score=47.90  Aligned_cols=168  Identities=11%  Similarity=0.112  Sum_probs=90.0

Q ss_pred             ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee------eEeeCCCCCCCCCCcCCcceeEEEEeecCC
Q 014154          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (430)
Q Consensus       153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (430)
                      .++.+.+..-+....+++..++.++++.-.++.+.++++.....      ...+.....    ..+...+-.++|  ++.
T Consensus        55 vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~----~~~N~G~EGla~--D~~  128 (248)
T PF06977_consen   55 VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFP----NKGNKGFEGLAY--DPK  128 (248)
T ss_dssp             EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S-------SS--EEEEE--ETT
T ss_pred             EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccc----cCCCcceEEEEE--cCC
Confidence            55666655556788899987777777665688999998843211      111111000    011245788999  787


Q ss_pred             CCEEEEEeCCCcEEEEECCC--CCcceEEEe--------ecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEee
Q 014154          227 HRKFVAGTNDHQVRLYDTSA--QRRPVMSFD--------FRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGC  295 (430)
Q Consensus       227 ~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~--------~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~  295 (430)
                      ++.|+.+-+..-..+|.++.  ....+....        .....+.+++++|.. ++++.+..+..|..+| .+|+.+..
T Consensus       129 ~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~  207 (248)
T PF06977_consen  129 TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSS  207 (248)
T ss_dssp             TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEE
T ss_pred             CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEE
Confidence            77777777776666776653  111111111        123457889999865 5666677788899999 68887665


Q ss_pred             eeCC---C-----CCCeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154          296 FIGK---C-----SGSIRSIARHPTLPIIASCGLDSYLRFW  328 (430)
Q Consensus       296 ~~~~---~-----~~~v~~i~~~~~~~~l~s~~~dg~i~iw  328 (430)
                      +.-.   +     -...-.|+|.++|.+.+ .++-+..++|
T Consensus       208 ~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-vsEpNlfy~f  247 (248)
T PF06977_consen  208 LSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-VSEPNLFYRF  247 (248)
T ss_dssp             EE-STTGGG-SS---SEEEEEE-TT--EEE-EETTTEEEEE
T ss_pred             EEeCCcccCcccccCCccEEEECCCCCEEE-EcCCceEEEe
Confidence            5432   0     13578899999996544 4566666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.66  E-value=0.011  Score=42.84  Aligned_cols=102  Identities=12%  Similarity=0.140  Sum_probs=68.6

Q ss_pred             eeEEEEee-cC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE
Q 014154          216 FTSAAFLS-ID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (430)
Q Consensus       216 v~~~~~~~-~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~  293 (430)
                      |+++++.. .. ..+.|++|+.|..|++|+-..   .+..+..+ ..|++++-... ..++.+..+|+|-+|+-  .+.+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence            45555531 12 225899999999999998653   45566544 57888877655 57888999999999975  3445


Q ss_pred             eeeeCCCCCCeEEEEecC-C--C-CeEEEEeCCCcEE
Q 014154          294 GCFIGKCSGSIRSIARHP-T--L-PIIASCGLDSYLR  326 (430)
Q Consensus       294 ~~~~~~~~~~v~~i~~~~-~--~-~~l~s~~~dg~i~  326 (430)
                      ...+..  ..+.++++.. +  | +-|++|-.+|.|-
T Consensus        75 WRiKSK--~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIKSK--NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeccC--CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            556553  3466665543 3  2 3688888888764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.59  E-value=0.0013  Score=63.36  Aligned_cols=109  Identities=15%  Similarity=0.113  Sum_probs=82.5

Q ss_pred             EEEEEcCCCCEEEEEeC----CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          166 AFSKVDISEKFSLFGGK----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      +-..|+|...++++++.    .|.|.||- ++|++.....          -+..+++++|  +|..-.|+.|=.-|.+.+
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt----------~P~hatSLCW--Hpe~~vLa~gwe~g~~~v   85 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT----------YPVHATSLCW--HPEEFVLAQGWEMGVSDV   85 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc----------cceehhhhcc--ChHHHHHhhccccceeEE
Confidence            34578888888887763    56777773 4555332221          1245778999  788888999989999999


Q ss_pred             EECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154          242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (430)
Q Consensus       242 wd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~  288 (430)
                      |...+.+. ......|..+|..+.||++|..++++..-|.|.+|...
T Consensus        86 ~~~~~~e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   86 QKTNTTET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             EecCCcee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            99987442 34445689999999999999999999999999999765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.063  Score=49.69  Aligned_cols=211  Identities=17%  Similarity=0.101  Sum_probs=137.5

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEeeC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAK  201 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~  201 (430)
                      .++.....+.+.+.+.....        .+..-  .-+.....++++++++.++++..   ++++.+.|-.+........
T Consensus        88 vyv~~~~~~~v~vid~~~~~--------~~~~~--~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~  157 (381)
T COG3391          88 VYVTTGDSNTVSVIDTATNT--------VLGSI--PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP  157 (381)
T ss_pred             EEEecCCCCeEEEEcCcccc--------eeeEe--eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence            44444455677777643221        11111  11235677899999988887765   6889999998888877643


Q ss_pred             CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceE-----EEeecCCCeEEEEecCCCCEEEE
Q 014154          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM-----SFDFRETPIKAVAEEPDSFNIYI  275 (430)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~-----~~~~~~~~i~~~~~sp~~~~l~~  275 (430)
                      ...         . ...+++  +|++..++.+. .++.|.+.|...... ..     ....+ ..-..+.++|++.++++
T Consensus       158 vG~---------~-P~~~a~--~p~g~~vyv~~~~~~~v~vi~~~~~~v-~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV  223 (381)
T COG3391         158 VGN---------T-PTGVAV--DPDGNKVYVTNSDDNTVSVIDTSGNSV-VRGSVGSLVGVG-TGPAGIAVDPDGNRVYV  223 (381)
T ss_pred             cCC---------C-cceEEE--CCCCCeEEEEecCCCeEEEEeCCCcce-eccccccccccC-CCCceEEECCCCCEEEE
Confidence            321         1 267788  89999666655 788999999776331 21     11111 23467889999997776


Q ss_pred             EeCC---CcEEEEEccCCeEEee-eeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEE
Q 014154          276 GNGS---GDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVF  350 (430)
Q Consensus       276 ~~~d---~~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~  350 (430)
                      ....   +.+...|..++..... +..... ....+.++|+|.++.+.. ..+.+.+.|..+......+...........
T Consensus       224 ~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~  302 (381)
T COG3391         224 ANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPV  302 (381)
T ss_pred             EeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccce
Confidence            6544   5899999999887665 332212 467789999999888774 448899999998887776433223233345


Q ss_pred             eeeccccccc
Q 014154          351 DSAFADKEVA  360 (430)
Q Consensus       351 ~~~~s~~g~~  360 (430)
                      .+++.+....
T Consensus       303 ~~~~~~~~~~  312 (381)
T COG3391         303 SIAISPLYDT  312 (381)
T ss_pred             eccceeeccc
Confidence            6666665443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.57  E-value=0.07  Score=49.80  Aligned_cols=166  Identities=13%  Similarity=-0.012  Sum_probs=83.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      +.|.++.|..+. .|++...||.+++||+. |+..+.+.. ......+ ....+....+  ..+|-.++  ..++.+.+.
T Consensus        81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~-~i~~~~v-~e~~i~~~~~--~~~GivvL--t~~~~~~~v  152 (410)
T PF04841_consen   81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGE-EIEEEKV-LECRIFAIWF--YKNGIVVL--TGNNRFYVV  152 (410)
T ss_pred             CCEEEEEECCCC-eEEEEEcCCEEEEEeCC-Cceeechhh-hccccCc-cccccccccc--CCCCEEEE--CCCCeEEEE
Confidence            789999998754 55567789999999986 333222111 1000000 0011222233  22442222  334444443


Q ss_pred             ECCCCCcceEEE---ee-----cCC-CeEE-EEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          243 DTSAQRRPVMSF---DF-----RET-PIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       243 d~~~~~~~~~~~---~~-----~~~-~i~~-~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      .-.........+   ..     +.. .... ..++.+....+....++.+.+.+-...+.   +..  .+++..++.||+
T Consensus       153 ~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~--~~~i~~iavSpn  227 (410)
T PF04841_consen  153 NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDS--DGPIIKIAVSPN  227 (410)
T ss_pred             eCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccC--CCCeEEEEECCC
Confidence            222111001111   00     000 0000 22344444444444555555444322211   222  368999999999


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154          313 LPIIASCGLDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  341 (430)
                      +++||.-..+|.+.|....-.+.+..+..
T Consensus       228 g~~iAl~t~~g~l~v~ssDf~~~~~e~~~  256 (410)
T PF04841_consen  228 GKFIALFTDSGNLWVVSSDFSEKLCEFDT  256 (410)
T ss_pred             CCEEEEEECCCCEEEEECcccceeEEeec
Confidence            99999999999999988765566555433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.52  E-value=0.08  Score=49.39  Aligned_cols=209  Identities=15%  Similarity=0.056  Sum_probs=105.8

Q ss_pred             eEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceE
Q 014154           76 LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVK  155 (430)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~  155 (430)
                      .|.||+. .|+++..+.-      ..  +.+..+.|...         ..++....+|.++++++.-....+  ....+.
T Consensus        62 ~I~iys~-sG~ll~~i~w------~~--~~iv~~~wt~~---------e~LvvV~~dG~v~vy~~~G~~~fs--l~~~i~  121 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPW------DS--GRIVGMGWTDD---------EELVVVQSDGTVRVYDLFGEFQFS--LGEEIE  121 (410)
T ss_pred             EEEEECC-CCCEeEEEEE------CC--CCEEEEEECCC---------CeEEEEEcCCEEEEEeCCCceeec--hhhhcc
Confidence            5899986 6777766543      11  57777777553         377788899999999863111000  000110


Q ss_pred             EeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeE-EEEeecCCCCEEEEE
Q 014154          156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTS-AAFLSIDDHRKFVAG  233 (430)
Q Consensus       156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~  233 (430)
                      ...+ ....+....+..+|-.+  -..++.+.+.+--... ....+.................. ..+  +.+....+..
T Consensus       122 ~~~v-~e~~i~~~~~~~~Givv--Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l--~~~~~~~i~~  196 (410)
T PF04841_consen  122 EEKV-LECRIFAIWFYKNGIVV--LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL--SSDRVVEILL  196 (410)
T ss_pred             ccCc-ccccccccccCCCCEEE--ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe--ecCcceEEEE
Confidence            0000 00112222233244223  3344444444322211 11111111000000000011111 122  3444555555


Q ss_pred             eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  313 (430)
                      ..++.+.+.+-....    .+. ..+++..+++||++++|+.-..+|.+.+.+..-.+.+.++..........+.|.-+.
T Consensus       197 ~~g~~i~~i~~~~~~----~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  197 ANGETIYIIDENSFK----QID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             ecCCEEEEEEccccc----ccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            566666655443311    122 236899999999999999999999999998766666666654324566777776554


Q ss_pred             C
Q 014154          314 P  314 (430)
Q Consensus       314 ~  314 (430)
                      .
T Consensus       272 a  272 (410)
T PF04841_consen  272 A  272 (410)
T ss_pred             c
Confidence            3

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.51  E-value=0.058  Score=47.49  Aligned_cols=232  Identities=14%  Similarity=0.110  Sum_probs=123.5

Q ss_pred             CCceeEEeecCCeEEEecCC-CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154           64 NDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (430)
Q Consensus        64 ~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~  142 (430)
                      .++.|+.|..+| |.+++.. ..........          ..+..+.+.+...        .++ ...|+.+.++++..
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~----------~~I~ql~vl~~~~--------~ll-vLsd~~l~~~~L~~   65 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKL----------SSITQLSVLPELN--------LLL-VLSDGQLYVYDLDS   65 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEeec----------ceEEEEEEecccC--------EEE-EEcCCccEEEEchh
Confidence            456799998888 8888883 2332222222          2477777766543        333 34558999998764


Q ss_pred             cCccccCCC-----cceEEeeecCCCceEEEE--EcCCCCEEEEEeCCCeEEEEECCCC-----eeeEeeCCCCCCCCCC
Q 014154          143 TKVSAESSC-----STVKSWNVCASGTIAFSK--VDISEKFSLFGGKGVEVNVWDLDKC-----EKIWTAKPPPKNSLGI  210 (430)
Q Consensus       143 ~~~~~~~~~-----~~i~~~~~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~  210 (430)
                      -........     .............+...+  -...+...+.......|.+|.+...     ....++..        
T Consensus        66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l--------  137 (275)
T PF00780_consen   66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL--------  137 (275)
T ss_pred             hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc--------
Confidence            332110000     000001112223344444  1223333344444558888887653     23333333        


Q ss_pred             cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec------------CCCeEEEEecCCCCEEEEEeC
Q 014154          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------------ETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~i~~~~~sp~~~~l~~~~~  278 (430)
                        +..+..++|.    ++.|+.|..+ ...+.|+.++.. ...+...            ..++..+.. +++.+|++-  
T Consensus       138 --p~~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--  206 (275)
T PF00780_consen  138 --PDPPSSIAFL----GNKICVGTSK-GFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--  206 (275)
T ss_pred             --CCCcEEEEEe----CCEEEEEeCC-ceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--
Confidence              2668889993    5677777644 578889986442 2222111            123333443 345566543  


Q ss_pred             CCcEEEEEccCCeEEe--eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEE
Q 014154          279 SGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  340 (430)
                      +..-.+.|. .|+...  .+.=  ...+..+++  ..++|+..+. +.|.||++.++++++.+.
T Consensus       207 ~~~g~fv~~-~G~~~r~~~i~W--~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  207 DNIGVFVNK-NGEPSRKSTIQW--SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             cceEEEEcC-CCCcCcccEEEc--CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            333344454 444332  2222  234556666  4457777765 459999999999999854

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.50  E-value=0.048  Score=46.42  Aligned_cols=191  Identities=13%  Similarity=0.071  Sum_probs=118.9

Q ss_pred             eEEeeecCCCceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      ++.+......-...+.|..++.++-+.+.-|  .|+.+|+.+++..........        ..-..++..   ++.+..
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--------~FgEGit~~---~d~l~q  104 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--------YFGEGITIL---GDKLYQ  104 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----------EEEEEEE---TTEEEE
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--------ccceeEEEE---CCEEEE
Confidence            3444444455667888876777777777666  699999999987765544321        223445552   344444


Q ss_pred             EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC----CCCCeEEE
Q 014154          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRSI  307 (430)
Q Consensus       232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~i  307 (430)
                      ..=.++...+||..+.+ .+..+... +.-..++  .++..|+.+.....|+++|..+.+....+...    .-..++-+
T Consensus       105 LTWk~~~~f~yd~~tl~-~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNEL  180 (264)
T PF05096_consen  105 LTWKEGTGFVYDPNTLK-KIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNEL  180 (264)
T ss_dssp             EESSSSEEEEEETTTTE-EEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEE
T ss_pred             EEecCCeEEEEccccce-EEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeE
Confidence            45678899999999854 46666543 4456666  46778888888889999999888777666532    12245667


Q ss_pred             EecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc------------ccceEEeeeccccccc
Q 014154          308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH------------LNEVVFDSAFADKEVA  360 (430)
Q Consensus       308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~~~v~~~~~s~~g~~  360 (430)
                      .|- +|.+.|-.=....|...|..+|+.+..+.+.+-            ...+.+.+||.|....
T Consensus       181 E~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~  244 (264)
T PF05096_consen  181 EYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR  244 (264)
T ss_dssp             EEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred             EEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence            775 666666555667788899999999887654321            1357899999887655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=97.49  E-value=0.00039  Score=39.63  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 014154          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (430)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd  286 (430)
                      +...+..|...|.++.|++.+.++++++.|+.+++||
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4566777888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.49  E-value=0.0022  Score=63.21  Aligned_cols=142  Identities=14%  Similarity=0.154  Sum_probs=99.6

Q ss_pred             CCCEEEE-EeCCCcEEEEECCCCCcceEEEeecCCC-eEEEEecCC-------CCEEEEEeCCCcEEEEEccCCe--EEe
Q 014154          226 DHRKFVA-GTNDHQVRLYDTSAQRRPVMSFDFRETP-IKAVAEEPD-------SFNIYIGNGSGDLASVDIRTGK--LLG  294 (430)
Q Consensus       226 ~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~-i~~~~~sp~-------~~~l~~~~~d~~i~iwd~~~~~--~~~  294 (430)
                      +.++|+. ......|+-.|+..++ .+..+..|... |..++  |+       ....++|-.++.|..||.|-..  ++.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCc-EEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence            3344443 3356789999999876 58888887643 55543  43       2345678889999999998632  221


Q ss_pred             ----eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceE
Q 014154          295 ----CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE  370 (430)
Q Consensus       295 ----~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~  370 (430)
                          .+..  ....+|++-..+| +||.|+.+|.||+||- .|..-.+. +++- +..|.++..+.||+++.+..+..|.
T Consensus       569 ~~~k~Y~~--~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~-lp~l-G~pI~~iDvt~DGkwilaTc~tyLl  642 (794)
T PF08553_consen  569 SQSKQYSS--KNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTA-LPGL-GDPIIGIDVTADGKWILATCKTYLL  642 (794)
T ss_pred             cccccccc--CCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhc-CCCC-CCCeeEEEecCCCcEEEEeecceEE
Confidence                1211  4467788877777 6899999999999994 44433332 4443 6678999999999998889999999


Q ss_pred             ecCCCC
Q 014154          371 IQNGND  376 (430)
Q Consensus       371 ~~~~~~  376 (430)
                      +++..-
T Consensus       643 Li~t~~  648 (794)
T PF08553_consen  643 LIDTLI  648 (794)
T ss_pred             EEEEee
Confidence            988643

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.49  E-value=0.0071  Score=56.22  Aligned_cols=143  Identities=14%  Similarity=0.153  Sum_probs=86.1

Q ss_pred             eeEEEEeecCCCCEEEEEe---CC-CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCc--EEEEEcc
Q 014154          216 FTSAAFLSIDDHRKFVAGT---ND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGD--LASVDIR  288 (430)
Q Consensus       216 v~~~~~~~~~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~--i~iwd~~  288 (430)
                      +..-+|  +|++..++...   .. ..+.++|+.++..+. .+. -.+.-...+|+|||+.|+... .||.  |+++|+.
T Consensus       195 ~~~p~w--s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         195 ILTPAW--SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-ILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             eecccc--CcCCCceEEEEEecCCCceEEEEeccCCccce-eec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            444556  67777655442   22 468999999876532 222 223345678999998776554 4554  7777887


Q ss_pred             CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC-CC--cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC
Q 014154          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL-DS--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA  364 (430)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~  364 (430)
                      .++... +... .+.-..-.|+|||++|+-.+. .|  .|.+++...+.. ..+...+.  .. ....|+|||++ +..+
T Consensus       271 ~~~~~~-Lt~~-~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~--~~-~~p~~SpdG~~i~~~~  344 (425)
T COG0823         271 GKNLPR-LTNG-FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG--GN-SNPVWSPDGDKIVFES  344 (425)
T ss_pred             CCccee-cccC-CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC--CC-cCccCCCCCCEEEEEe
Confidence            776433 4432 333346689999998876653 34  466777766554 33323322  22 27899999998 4433


Q ss_pred             -CCCc
Q 014154          365 -DAPM  368 (430)
Q Consensus       365 -~d~~  368 (430)
                       .+|.
T Consensus       345 ~~~g~  349 (425)
T COG0823         345 SSGGQ  349 (425)
T ss_pred             ccCCc
Confidence             2454

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.44  E-value=0.00066  Score=67.00  Aligned_cols=101  Identities=20%  Similarity=0.316  Sum_probs=74.8

Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  305 (430)
                      .+..++.|+..|.|...|+...-.+...-..-.++|++++|+.+|.+++.|-.+|.|.+||+..++.++.+..+ ..+.+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~-~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH-GAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec-CCccc
Confidence            35578899999999999988643332222223579999999999999999999999999999999988887765 55544


Q ss_pred             EEE---ecCCCCeEEEEeCCCcEEEEE
Q 014154          306 SIA---RHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       306 ~i~---~~~~~~~l~s~~~dg~i~iwd  329 (430)
                      ++-   +..++..++++..-|.  +|.
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            443   3345556777766665  554

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.44  E-value=0.01  Score=57.74  Aligned_cols=149  Identities=13%  Similarity=0.060  Sum_probs=87.2

Q ss_pred             ceeEEEEeecCCCCEEEEEe------CCC--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-------
Q 014154          215 WFTSAAFLSIDDHRKFVAGT------NDH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-------  279 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-------  279 (430)
                      .+...++  +|+++.++...      .|.  .|.+++...  .......+  ...+.-.|+|+|..|++....       
T Consensus       351 ~vsspai--SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        351 NITSAAL--SRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             CcccceE--CCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceeeecC--CCCCCceECCCCCceEEEecCcceEEEe
Confidence            4667778  89999887765      243  455556532  22222333  247889999998888777533       


Q ss_pred             -----CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE---EECCCCce-e-eEEEeeccccceE
Q 014154          280 -----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF---WDIKTRQL-L-SAVFLKQHLNEVV  349 (430)
Q Consensus       280 -----~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i---wd~~~~~~-~-~~~~~~~~~~~~v  349 (430)
                           +.+.+.++..+....   .. ...|..+.|||||..|+... ++.|++   -....|.. + ....+.......+
T Consensus       425 ~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~  499 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA  499 (591)
T ss_pred             ccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence                 223323333332221   11 45799999999999887765 577777   45445541 1 1111222223335


Q ss_pred             EeeeccccccccccCCCCceEecCC
Q 014154          350 FDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       350 ~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      .++.|.+++.++.+..++...+|..
T Consensus       500 ~~l~W~~~~~L~V~~~~~~~~v~~v  524 (591)
T PRK13616        500 VSLDWRTGDSLVVGRSDPEHPVWYV  524 (591)
T ss_pred             ccceEecCCEEEEEecCCCCceEEE
Confidence            7899999999855444444445543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0041  Score=56.98  Aligned_cols=143  Identities=16%  Similarity=0.196  Sum_probs=95.8

Q ss_pred             CCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-------CEEEEEeCCCcEEEEEC
Q 014154          173 SEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-------RKFVAGTNDHQVRLYDT  244 (430)
Q Consensus       173 ~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~s~~~dg~i~iwd~  244 (430)
                      +.++|+ .+.....|+-.|++.|+.+.+...+..          |+-+.+  .|+.       ..-+.|-.+..|.-||+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d----------i~mv~~--t~d~K~~Ql~~e~TlvGLs~n~vfriDp  411 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD----------INMVDI--TPDFKFAQLTSEQTLVGLSDNSVFRIDP  411 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCC----------cceeec--cCCcchhcccccccEEeecCCceEEecc
Confidence            344444 455556788889999999888776642          444555  3332       22345778899999999


Q ss_pred             CCCCc-ceEEEeecC----CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          245 SAQRR-PVMSFDFRE----TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       245 ~~~~~-~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      +-... .+...++|.    ....|.+-..+| +|++|+.+|.|++||--..+....+++- ..+|..|..+.+|.+|+..
T Consensus       412 Rv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgL-G~~I~hVdvtadGKwil~T  489 (644)
T KOG2395|consen  412 RVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGL-GDAIKHVDVTADGKWILAT  489 (644)
T ss_pred             cccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhccccc-CCceeeEEeeccCcEEEEe
Confidence            85333 233334442    244566655555 9999999999999997333334456665 8899999999999987765


Q ss_pred             eCCCcEEEEEC
Q 014154          320 GLDSYLRFWDI  330 (430)
Q Consensus       320 ~~dg~i~iwd~  330 (430)
                      + +..+.+-++
T Consensus       490 c-~tyLlLi~t  499 (644)
T KOG2395|consen  490 C-KTYLLLIDT  499 (644)
T ss_pred             c-ccEEEEEEE
Confidence            4 556777665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.37  E-value=0.15  Score=49.20  Aligned_cols=61  Identities=16%  Similarity=0.104  Sum_probs=38.0

Q ss_pred             CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC
Q 014154          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  299 (430)
                      |.|.-+|+.+++. +-..+.......+. +.-.+.+++.++.+|.++.+|.++|+.+..++..
T Consensus       441 g~l~AiD~~tGk~-~W~~~~~~p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKI-VWEHKEDFPLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCce-eeEecCCCCCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            4566677777653 33222211111111 1124557788888999999999999999888753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.36  E-value=0.17  Score=50.82  Aligned_cols=247  Identities=13%  Similarity=0.106  Sum_probs=122.9

Q ss_pred             CceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccc--------ccccCceEEEEccCCeeE
Q 014154           65 DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE--------SSSRSRTLLTCTTKGKAS  136 (430)
Q Consensus        65 g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~  136 (430)
                      +..|+.++.++.|.-.|..+|+.+..+................++.+++.....        .....++++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            345788888899999999999988877652211100000011233344321000        000114677777777655


Q ss_pred             EEEeeecCccccCCCcceEEeeecCCCceE-------------EEEEcC--CCCEEEEEeC----------CCeEEEEEC
Q 014154          137 MRSIEVTKVSAESSCSTVKSWNVCASGTIA-------------FSKVDI--SEKFSLFGGK----------GVEVNVWDL  191 (430)
Q Consensus       137 v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~-------------~~~~~~--~~~~l~~~~~----------d~~i~~~d~  191 (430)
                      -.+.....          .+|....++.+.             .+.-.|  .+..+++|+.          +|.|+-+|.
T Consensus       274 ALDA~TGk----------~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da  343 (764)
T TIGR03074       274 ALDADTGK----------LCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDV  343 (764)
T ss_pred             EEECCCCC----------EEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEEC
Confidence            55533222          123322221110             111122  2456666643          688999999


Q ss_pred             CCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-cEEEEECCCCCcceEEEeecCCCeEEEEecCCC
Q 014154          192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS  270 (430)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~  270 (430)
                      ++|+.++.+.........           .  .+.+.....++.+. ...-+|...+.  +..-.+...    ..+....
T Consensus       344 ~TGkl~W~~~~g~p~~~~-----------~--~~~g~~~~~gg~n~W~~~s~D~~~gl--vy~ptGn~~----pd~~g~~  404 (764)
T TIGR03074       344 NTGALVWAWDPGNPDPTA-----------P--PAPGETYTRNTPNSWSVASYDEKLGL--VYLPMGNQT----PDQWGGD  404 (764)
T ss_pred             CCCcEeeEEecCCCCccc-----------C--CCCCCEeccCCCCccCceEEcCCCCe--EEEeCCCcc----ccccCCc
Confidence            999999988653211100           0  11222222222111 23344444322  111111111    0110001


Q ss_pred             CEEEEEeCCCcEEEEEccCCeEEeeeeC-CCC-------CCeEEEEecC-CCC---eEEEEeCCCcEEEEECCCCceeeE
Q 014154          271 FNIYIGNGSGDLASVDIRTGKLLGCFIG-KCS-------GSIRSIARHP-TLP---IIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       271 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~-------~~v~~i~~~~-~~~---~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      +.....-..+.|.-.|+++|+....++. ||.       ....-+.+.. +|+   .++.++.+|.++++|.++|+.+..
T Consensus       405 r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       405 RTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             cccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            1011112245678889999998888775 321       1112222322 553   789999999999999999999886


Q ss_pred             EE
Q 014154          339 VF  340 (430)
Q Consensus       339 ~~  340 (430)
                      +.
T Consensus       485 ~~  486 (764)
T TIGR03074       485 VE  486 (764)
T ss_pred             ce
Confidence            54

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.36  E-value=0.0057  Score=56.23  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=77.3

Q ss_pred             ceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC------------------------------------------cceE
Q 014154          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------------------------------------------RPVM  252 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------------------------------~~~~  252 (430)
                      .|+.+.|  .++..-|++|...|.|.||.....+                                          .|..
T Consensus         3 ~v~~vs~--a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    3 SVTHVSF--APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             -EEEEEE--ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             eEEEEEe--cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence            3778888  6777788999999999888643211                                          1233


Q ss_pred             EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC-------CCCCCeEEEEecC-----CC---CeEE
Q 014154          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG-------KCSGSIRSIARHP-----TL---PIIA  317 (430)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~v~~i~~~~-----~~---~~l~  317 (430)
                      .++...++|++++.|.-| ++++|..+|.+.|.|+|....++.-.-       .....|+++.|..     |+   -.|+
T Consensus        81 l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             EE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             heeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            334446899999998555 999999999999999998888766321       1234688888872     23   4688


Q ss_pred             EEeCCCcEEEEECC
Q 014154          318 SCGLDSYLRFWDIK  331 (430)
Q Consensus       318 s~~~dg~i~iwd~~  331 (430)
                      +|...|.+.+|.+-
T Consensus       160 vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  160 VGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEETTSEEEEEEEE
T ss_pred             EEeCCCCEEEEEEe
Confidence            89999999999774

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=97.32  E-value=0.22  Score=50.01  Aligned_cols=112  Identities=16%  Similarity=0.035  Sum_probs=73.6

Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC-CCCeEEEEecCCCCeEEEEeCCCcEEEEECCC-CceeeEEEe
Q 014154          264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFL  341 (430)
Q Consensus       264 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~  341 (430)
                      .++.|-..++++| ....+++||+-..++++...... ...|+.+++  .+..++.|...-.|.++-.+. ...+..+ .
T Consensus       939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~f-a 1014 (1205)
T KOG1898|consen  939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVF-A 1014 (1205)
T ss_pred             eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEE-e
Confidence            3455766677666 56689999998877765544321 557788887  666788886555565544433 2333333 3


Q ss_pred             eccccceEEeeeccccccccccCCCCceEecCCCCCcc
Q 014154          342 KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       342 ~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~~  379 (430)
                      .......++++.+-..+.++.+..-|.+.+...+....
T Consensus      1015 dD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P~d~~ 1052 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLDYDTVAGADRFGNIAVVRIPPDVS 1052 (1205)
T ss_pred             CCCccceeeEEEEecCCceeeccccCcEEEEECCCcch
Confidence            44445567888887777778888889998888876443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.28  E-value=0.093  Score=44.94  Aligned_cols=169  Identities=8%  Similarity=0.072  Sum_probs=111.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ..+.++.|+|+.+.|++......-.++=-.+|+.+.++.....        .....+.+  -.++.+.++--.++.+.++
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~--------~DpE~Iey--ig~n~fvi~dER~~~l~~~  155 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF--------SDPETIEY--IGGNQFVIVDERDRALYLF  155 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc--------CChhHeEE--ecCCEEEEEehhcceEEEE
Confidence            4488999999999999988888888877778888887765321        22345666  4566777777778888887


Q ss_pred             ECCCCCcceE----EE-----eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE---eeeeCC------CCCCe
Q 014154          243 DTSAQRRPVM----SF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL---GCFIGK------CSGSI  304 (430)
Q Consensus       243 d~~~~~~~~~----~~-----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~------~~~~v  304 (430)
                      .+......+.    .+     ...+.....++|.|..+.|+.+-+-.-+.||....+...   .....+      .-..|
T Consensus       156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv  235 (316)
T COG3204         156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV  235 (316)
T ss_pred             EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence            7665322110    11     111446678999999999999888888888876533211   111111      01246


Q ss_pred             EEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEee
Q 014154          305 RSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLK  342 (430)
Q Consensus       305 ~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  342 (430)
                      .++.|++ .+.+|+-+.+++.+.-.|.. |..+..+.+.
T Consensus       236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~  273 (316)
T COG3204         236 SGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLT  273 (316)
T ss_pred             ccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEec
Confidence            7788886 45666777777888888864 5656655443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.17  E-value=0.00056  Score=55.64  Aligned_cols=142  Identities=17%  Similarity=0.124  Sum_probs=79.4

Q ss_pred             EEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC-eEEeeeeCCCCCCeEE-E
Q 014154          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG-KLLGCFIGKCSGSIRS-I  307 (430)
Q Consensus       230 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~v~~-i  307 (430)
                      +...+.+|.|+-++++.-+...+.-..+... ..+  -.-+..+++|+.+|.|++|..... .....+... ...|.+ |
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v--~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~I  108 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG-QRV--VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGI  108 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc-eee--cccCceEEeecccceEEEecCCccchHHHhhhcc-cccceecc
Confidence            3444778888888877533222222222222 111  123568899999999999987622 211112221 223332 2


Q ss_pred             EecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc-cccc--CCCCceEecCCCCC
Q 014154          308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV-ANAA--ADAPMLEIQNGNDT  377 (430)
Q Consensus       308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~~~~--~~d~~i~~~~~~~~  377 (430)
                      .--.++.+..+++.||.||.|++.-.+.+..  ..+|..........+..+. +..+  +.|..++.|+....
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~--~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGY--VGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeee--eccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            2233456788999999999999998887775  3344312222333333333 3444  67777777777654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.12  E-value=0.37  Score=48.54  Aligned_cols=74  Identities=9%  Similarity=0.015  Sum_probs=46.9

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC------cceeeeeecCC--------------CCCceeEEeec
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS------NCVLAASIDDS--------------QNDPLLAVARK   73 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------p~g~~l~~g~~   73 (430)
                      ..+++.++.++.|.-.|..++     +.+=++......      ..+-.+++-..              ..+..++.++.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TG-----k~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~  268 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATG-----KEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS  268 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCC-----cEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC
Confidence            367888888999988898887     444333221110      01111111111              23447888999


Q ss_pred             CCeEEEecCCCCcccceee
Q 014154           74 NGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        74 dg~i~iwd~~~~~~~~~~~   92 (430)
                      |+.|.-.|..+|+.+..+.
T Consensus       269 Dg~LiALDA~TGk~~W~fg  287 (764)
T TIGR03074       269 DARLIALDADTGKLCEDFG  287 (764)
T ss_pred             CCeEEEEECCCCCEEEEec
Confidence            9999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.11  E-value=0.0017  Score=39.06  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=31.0

Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  336 (430)
                      ...|..++|+|...+||.++.+|.|.+|.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            457999999999999999999999999999 56554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.11  E-value=0.031  Score=51.48  Aligned_cols=143  Identities=15%  Similarity=0.157  Sum_probs=99.0

Q ss_pred             EEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC-------EEEEEeCCCcEEEEEccCC-e-EEeeeeCC
Q 014154          229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-------NIYIGNGSGDLASVDIRTG-K-LLGCFIGK  299 (430)
Q Consensus       229 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-------~l~~~~~d~~i~iwd~~~~-~-~~~~~~~~  299 (430)
                      +|.++.....++-.|+..++ .+..+..+.. |.-+.+.|+.+       .-+.|-.++.|.-||.|-. . .+...++|
T Consensus       348 il~~~~~~~~l~klDIE~GK-IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGK-IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             EeeCCCCcCcceeeecccce-eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            44455566778888998876 5778887755 77777777642       2245667889999999832 2 22222332


Q ss_pred             C---CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          300 C---SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       300 ~---~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      .   .....|++-..+| +++.||.+|.||+||- .+..-.+. +++- +..|..+..+.||+++.+..+..+.+-+..-
T Consensus       426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTA-lPgL-G~~I~hVdvtadGKwil~Tc~tyLlLi~t~~  501 (644)
T KOG2395|consen  426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTA-LPGL-GDAIKHVDVTADGKWILATCKTYLLLIDTLI  501 (644)
T ss_pred             ccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhc-cccc-CCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence            1   2234555554555 7899999999999997 55544443 5554 6668999999999998888899998877655


Q ss_pred             C
Q 014154          377 T  377 (430)
Q Consensus       377 ~  377 (430)
                      .
T Consensus       502 k  502 (644)
T KOG2395|consen  502 K  502 (644)
T ss_pred             c
Confidence            3

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.10  E-value=0.075  Score=51.81  Aligned_cols=186  Identities=12%  Similarity=0.017  Sum_probs=96.9

Q ss_pred             ceEEEEEcCCCCEEEEEe------CCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC
Q 014154          164 TIAFSKVDISEKFSLFGG------KGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~------~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  235 (430)
                      .+...+++|+++.++...      .|.  .|.+++... .. ..+...          .....-.|  +|+|..|++...
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g----------~~~t~PsW--spDG~~lw~v~d  416 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG----------HSLTRPSW--SLDADAVWVVVD  416 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC----------CCCCCceE--CCCCCceEEEec
Confidence            567888999999887665      233  455555422 22 222111          12455577  788776666543


Q ss_pred             C------------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEE---EEccCCeE-E---eee
Q 014154          236 D------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLAS---VDIRTGKL-L---GCF  296 (430)
Q Consensus       236 d------------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~  296 (430)
                      .            +.+.+.++..+.. ..   .....|..+.|||||..|+... ++.|++   -....|.. +   ..+
T Consensus       417 g~~~~~v~~~~~~gql~~~~vd~ge~-~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l  491 (591)
T PRK13616        417 GNTVVRVIRDPATGQLARTPVDASAV-AS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV  491 (591)
T ss_pred             CcceEEEeccCCCceEEEEeccCchh-hh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe
Confidence            2            2333334443221 11   2245799999999999888765 577776   44344431 1   112


Q ss_pred             eCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC-CceeeEEEeeccccceEEeeeccccccccccCCCCceEe
Q 014154          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEI  371 (430)
Q Consensus       297 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~  371 (430)
                      .......+..+.|.+++.++ .+..++.-.+|.+.- |.....+ ..+.....+..++=+++ .+.....++.+.+
T Consensus       492 ~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~-~iyv~~~~g~~~l  564 (591)
T PRK13616        492 GPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS-TVYVTDARAVLQL  564 (591)
T ss_pred             ecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc-eEEEEcCCceEEe
Confidence            22113346889999998854 544444444444321 2221111 11111233456666653 3344445554443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.07  E-value=0.19  Score=44.55  Aligned_cols=188  Identities=14%  Similarity=0.071  Sum_probs=103.4

Q ss_pred             ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (430)
Q Consensus       153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  232 (430)
                      ..++|...  ..+.++..-..+..|+++..  -+.+++.+++.....+.......    .....+.+..  .|+|.+-++
T Consensus        58 ~~~~~~~p--~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~----~~~r~ND~~v--~pdG~~wfg  127 (307)
T COG3386          58 KKRVFPSP--GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGL----PLNRPNDGVV--DPDGRIWFG  127 (307)
T ss_pred             ceEEEECC--CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCC----CcCCCCceeE--cCCCCEEEe
Confidence            44555532  33344433334445554433  36667766555522222211110    0133455566  677776655


Q ss_pred             EeC-----------CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-CcEEEEEccC--Ce----EEe
Q 014154          233 GTN-----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRT--GK----LLG  294 (430)
Q Consensus       233 ~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~~--~~----~~~  294 (430)
                      ...           -|.|+.+|.. +. .+..+..+-..-+.|+||||++.|+..... +.|.-|++..  +.    ...
T Consensus       128 t~~~~~~~~~~~~~~G~lyr~~p~-g~-~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~  205 (307)
T COG3386         128 DMGYFDLGKSEERPTGSLYRVDPD-GG-VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGF  205 (307)
T ss_pred             CCCccccCccccCCcceEEEEcCC-CC-EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceE
Confidence            333           1334555542 22 244444444455789999999888777654 7888887752  21    111


Q ss_pred             eeeCCCCCCeEEEEecCCCCeEEEEeCCC-cEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          295 CFIGKCSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       295 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      .+.....+..-.++...+|.+.+++..+| .|.+|+.. |+++..+.++.   ..+++++|--
T Consensus       206 ~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~---~~~t~~~FgG  264 (307)
T COG3386         206 VDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV---KRPTNPAFGG  264 (307)
T ss_pred             EEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC---CCCccceEeC
Confidence            12211245566677777887776555554 89999988 99998866542   2356777754

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.04  E-value=0.23  Score=44.86  Aligned_cols=92  Identities=13%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      ..++.+..+|.-.+|.++....       .+....-..+.......++|+.+.++.......|+..|+++.+....+..+
T Consensus        49 kllF~s~~dg~~nly~lDL~t~-------~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p  121 (386)
T PF14583_consen   49 KLLFASDFDGNRNLYLLDLATG-------EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP  121 (386)
T ss_dssp             EEEEEE-TTSS-EEEEEETTT--------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             EEEEEeccCCCcceEEEEcccC-------EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence            3555666677777777664432       333332221222334566788888876666678899999887654444333


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      .         .++-...|..+.++..++
T Consensus       122 ~---------~~~g~gt~v~n~d~t~~~  140 (386)
T PF14583_consen  122 D---------DWKGYGTWVANSDCTKLV  140 (386)
T ss_dssp             T---------TEEEEEEEEE-TTSSEEE
T ss_pred             c---------ccccccceeeCCCccEEE
Confidence            2         555555664455555544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.97  E-value=0.29  Score=44.83  Aligned_cols=149  Identities=14%  Similarity=0.134  Sum_probs=76.7

Q ss_pred             ceEEEEEcCCCCEEEEEe--CC---CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154          164 TIAFSKVDISEKFSLFGG--KG---VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~--~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  238 (430)
                      .+..+.|.+++..|+..-  .+   ..+.++|..++.............+     ..-....|....+..+|.....+|.
T Consensus       185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv-----~~~~~~~~~~~~~~~~l~~s~~~G~  259 (353)
T PF00930_consen  185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV-----DVYDPPHFLGPDGNEFLWISERDGY  259 (353)
T ss_dssp             EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS-----SSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred             CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce-----eeecccccccCCCCEEEEEEEcCCC
Confidence            466788888887444332  22   2366677776554333322221111     1112334421234445556667786


Q ss_pred             EEEEECCCCCcceEEEeecCCCeEE-EEecCCCCEEE-EEeCC----CcEEEEEcc-CCeEEeeeeCCCCCCeEEEEecC
Q 014154          239 VRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIY-IGNGS----GDLASVDIR-TGKLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~-~~~~d----~~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      -+||-+.........+....-.|.. +.++++++.|+ ++..+    ..|+..++. .+.. ..+... ...-..+.|||
T Consensus       260 ~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~-~~~~~~~~~Sp  337 (353)
T PF00930_consen  260 RHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCE-DGDHYSASFSP  337 (353)
T ss_dssp             EEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTT-SSTTEEEEE-T
T ss_pred             cEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCC-CCCceEEEECC
Confidence            5554443322224556555566754 67788876665 55442    346666776 4443 455443 22226899999


Q ss_pred             CCCeEEEE
Q 014154          312 TLPIIASC  319 (430)
Q Consensus       312 ~~~~l~s~  319 (430)
                      ++++++-.
T Consensus       338 dg~y~v~~  345 (353)
T PF00930_consen  338 DGKYYVDT  345 (353)
T ss_dssp             TSSEEEEE
T ss_pred             CCCEEEEE
Confidence            99887644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.004  Score=61.76  Aligned_cols=100  Identities=13%  Similarity=0.089  Sum_probs=74.0

Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccce
Q 014154          269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV  348 (430)
Q Consensus       269 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  348 (430)
                      .+..++.|+..|.+-..|....=....-..+-.++|++++|+.+|.+++.|-.+|.|.+||+..+..++.+...++....
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            45688999999999998886531100111122679999999999999999999999999999999999987776665555


Q ss_pred             EEeeeccccccc-cccCCCCc
Q 014154          349 VFDSAFADKEVA-NAAADAPM  368 (430)
Q Consensus       349 v~~~~~s~~g~~-~~~~~d~~  368 (430)
                      +.-+.+..++.. +++...|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            555566555554 66666665

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.77  E-value=0.1  Score=44.38  Aligned_cols=141  Identities=16%  Similarity=0.155  Sum_probs=83.1

Q ss_pred             eeEEEEeecCC-CCEEEEEeCCCc-EEEEECCCCCcceEEEeecCCC--eEEEEecCCCCEEEEEeCC-----CcEEEEE
Q 014154          216 FTSAAFLSIDD-HRKFVAGTNDHQ-VRLYDTSAQRRPVMSFDFRETP--IKAVAEEPDSFNIYIGNGS-----GDLASVD  286 (430)
Q Consensus       216 v~~~~~~~~~~-~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~--i~~~~~sp~~~~l~~~~~d-----~~i~iwd  286 (430)
                      ...++|  +|. ..-++.+-.-|+ ..++|.+..+.++.... .++.  --.=.|||||.+|+..-.|     |.|-|||
T Consensus        70 ~Hgi~~--~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s-~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd  146 (366)
T COG3490          70 GHGIAF--HPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS-QEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYD  146 (366)
T ss_pred             cCCeec--CCCCcceEEEEecCCceEEEECCCCCcCcEEEec-ccCceeecccccCCCCcEEEeecCCCCCCCceEEEEe
Confidence            344555  332 334455555554 45788887665443221 1111  0112589999999987544     7899999


Q ss_pred             ccCC-eEEeeeeCCCCCCeEEEEecCCCCeEEEEeC------------------CCcEEEEECCCCceeeEEEeeccc-c
Q 014154          287 IRTG-KLLGCFIGKCSGSIRSIARHPTLPIIASCGL------------------DSYLRFWDIKTRQLLSAVFLKQHL-N  346 (430)
Q Consensus       287 ~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~~~~~-~  346 (430)
                      .+.+ +.+.++..| .-....+.|.+||+.|+.+..                  .-++.+.|..+|+++.+..+.... .
T Consensus       147 ~r~~fqrvgE~~t~-GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~  225 (366)
T COG3490         147 AREGFQRVGEFSTH-GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ  225 (366)
T ss_pred             cccccceecccccC-CcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence            9854 457788887 667788999999998887632                  112444455556665554333110 1


Q ss_pred             ceEEeeeccccccc
Q 014154          347 EVVFDSAFADKEVA  360 (430)
Q Consensus       347 ~~v~~~~~s~~g~~  360 (430)
                      -.+..++..+||..
T Consensus       226 lSiRHld~g~dgtv  239 (366)
T COG3490         226 LSIRHLDIGRDGTV  239 (366)
T ss_pred             cceeeeeeCCCCcE
Confidence            22455666666555

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.76  E-value=0.051  Score=52.53  Aligned_cols=116  Identities=12%  Similarity=0.046  Sum_probs=82.1

Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec--CCCCeEEEEeCCCcEEEEECC------
Q 014154          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH--PTLPIIASCGLDSYLRFWDIK------  331 (430)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~l~s~~~dg~i~iwd~~------  331 (430)
                      ...-+.-|.-++..++-+....+.|||.+.+...++-.-.....|..+.|.  |+++.+++.|..+.|.+|.-.      
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            344444455555555555556799999998886544332126789999986  688889888999999998542      


Q ss_pred             ---CCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          332 ---TRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       332 ---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                         +...+..+.+..+....|.+..|-++|.+++++ ++.+.|++...
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~~  157 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKWL  157 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCCc
Confidence               345666766777776778999999999986554 46777877644

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.74  E-value=0.52  Score=44.32  Aligned_cols=246  Identities=11%  Similarity=0.060  Sum_probs=122.4

Q ss_pred             eeeecCCCCCceeEEe-ecCC----eEEEecCCCCccccee-eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE
Q 014154           56 AASIDDSQNDPLLAVA-RKNG----LTDILNPLNGDLRVAI-SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC  129 (430)
Q Consensus        56 ~~~~~~~p~g~~l~~g-~~dg----~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  129 (430)
                      .+++  +|+|++||.+ +..|    .|++.|+.+|+.+... ...          ....+.|.+...       ..+.+.
T Consensus       128 ~~~~--Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~----------~~~~~~W~~d~~-------~~~y~~  188 (414)
T PF02897_consen  128 GFSV--SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP----------KFSSVSWSDDGK-------GFFYTR  188 (414)
T ss_dssp             EEEE--TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE----------ESEEEEECTTSS-------EEEEEE
T ss_pred             eeeE--CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc----------ccceEEEeCCCC-------EEEEEE
Confidence            4556  8999998875 3334    4999999999765432 211          111244444333       334443


Q ss_pred             ccCC--------eeEEEEeeecCccccCCCcceEEeeecCCCc-eEEEEEcCCCCEEEEEeC---C-CeEEEEECCCC--
Q 014154          130 TTKG--------KASMRSIEVTKVSAESSCSTVKSWNVCASGT-IAFSKVDISEKFSLFGGK---G-VEVNVWDLDKC--  194 (430)
Q Consensus       130 ~~~g--------~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~-i~~~~~~~~~~~l~~~~~---d-~~i~~~d~~~~--  194 (430)
                      ....        .-.||.......    ......+|....... ...+..++++++|+....   + ..+++.++..+  
T Consensus       189 ~~~~~~~~~~~~~~~v~~~~~gt~----~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~  264 (414)
T PF02897_consen  189 FDEDQRTSDSGYPRQVYRHKLGTP----QSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS  264 (414)
T ss_dssp             CSTTTSS-CCGCCEEEEEEETTS-----GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred             eCcccccccCCCCcEEEEEECCCC----hHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence            3321        223333322211    111245665444444 667888999999876443   2 35788888764  


Q ss_pred             --eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe---CCCcEEEEECCCCCc--ceEEEeecCC--CeEEEE
Q 014154          195 --EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR--PVMSFDFRET--PIKAVA  265 (430)
Q Consensus       195 --~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~~~--~i~~~~  265 (430)
                        .....+.....        .....+..   ..+.+++...   ..+.|.-.++.....  ....+..+..  .+..+.
T Consensus       265 ~~~~~~~l~~~~~--------~~~~~v~~---~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~  333 (414)
T PF02897_consen  265 PDAKPKLLSPRED--------GVEYYVDH---HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS  333 (414)
T ss_dssp             SS-SEEEEEESSS--------S-EEEEEE---ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred             CcCCcEEEeCCCC--------ceEEEEEc---cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence              11112111110        11222322   2333444332   235677778776542  1224444544  344444


Q ss_pred             ecCCCCEEEEE-eCCC--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE--EEe--CCCcEEEEECCCCceee
Q 014154          266 EEPDSFNIYIG-NGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA--SCG--LDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       266 ~sp~~~~l~~~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~--s~~--~dg~i~iwd~~~~~~~~  337 (430)
                      .  .+.+|+.. -.++  .|+++++..+.....+.....+.|..+...+++..+.  ..|  .-++++.||+.+++...
T Consensus       334 ~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~  410 (414)
T PF02897_consen  334 L--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL  410 (414)
T ss_dssp             E--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred             E--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence            4  34455544 3443  5889999845555555443245566776666665432  222  23578888998887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.67  E-value=0.43  Score=42.43  Aligned_cols=143  Identities=17%  Similarity=0.076  Sum_probs=86.0

Q ss_pred             ceEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154          164 TIAFSKVDISEKFSLFGGK-----------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  232 (430)
                      ..+.+...|+|.+.+....           -|.|+.+|. .+..+..+..+-         ...+.++|  +||++.|+.
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---------~~~NGla~--SpDg~tly~  179 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---------TIPNGLAF--SPDGKTLYV  179 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---------EecCceEE--CCCCCEEEE
Confidence            3456677777776654332           123444443 333333333311         44678999  899977766


Q ss_pred             EeC-CCcEEEEECCC--C----CcceEEEeecCCCeEEEEecCCCCEEEEEeCCC-cEEEEEccCCeEEeeeeCCCCCCe
Q 014154          233 GTN-DHQVRLYDTSA--Q----RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-DLASVDIRTGKLLGCFIGKCSGSI  304 (430)
Q Consensus       233 ~~~-dg~i~iwd~~~--~----~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~v  304 (430)
                      +.. .+.|+-|++..  +    ......+....+..-.++...+|.+.+++..+| .|.+|+.. ++++..+... ...+
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP-~~~~  257 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP-VKRP  257 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC-CCCC
Confidence            544 47888887752  1    111222223345566777778887775554444 89999987 9998888876 4678


Q ss_pred             EEEEec-CCCCeEEEEe
Q 014154          305 RSIARH-PTLPIIASCG  320 (430)
Q Consensus       305 ~~i~~~-~~~~~l~s~~  320 (430)
                      ++++|- |+.+.|+..+
T Consensus       258 t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         258 TNPAFGGPDLNTLYITS  274 (307)
T ss_pred             ccceEeCCCcCEEEEEe
Confidence            888884 3445444443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.67  E-value=0.0067  Score=36.51  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=30.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI  197 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  197 (430)
                      ...|.+++|+|..++||.++.+|.|.+|.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            457999999999999999999999999998 55544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=96.56  E-value=0.0011  Score=64.35  Aligned_cols=167  Identities=14%  Similarity=0.080  Sum_probs=94.8

Q ss_pred             CceEEEEEcC-CCCEEEEEeCCCeEEEEECC--CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154          163 GTIAFSKVDI-SEKFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (430)
Q Consensus       163 ~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  239 (430)
                      +.+..+.|.. +-..+.  -.-|.+.||++.  .|+....+..+...+++... ..|.-+-|  -++..++..+-.++.|
T Consensus       133 G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~-~~V~wcp~--~~~~~~ic~~~~~~~i  207 (1283)
T KOG1916|consen  133 GGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP-QLVSWCPI--AVNKVYICYGLKGGEI  207 (1283)
T ss_pred             CCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCc-ceeeeccc--ccccceeeeccCCCce
Confidence            4555566633 212222  334578889875  34443333333222222211 22333333  2345677777788899


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEE-----------ecCCCCEEEEEeCCCcEEEEEcc-----CCeEEeeeeCCCCCC
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVA-----------EEPDSFNIYIGNGSGDLASVDIR-----TGKLLGCFIGKCSGS  303 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~-----------~sp~~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~~~~~  303 (430)
                      ++.......  ...+.+|...+..++           +||||..++.++.||.++.|.+.     .-++++..+.|...+
T Consensus       208 ~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p  285 (1283)
T KOG1916|consen  208 RLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHP  285 (1283)
T ss_pred             eEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCC
Confidence            988776532  234445665544433           58999999999999998888654     344566677763233


Q ss_pred             eEEEEecCCC---------CeEEEEe-CCCcEEEEECCCCcee
Q 014154          304 IRSIARHPTL---------PIIASCG-LDSYLRFWDIKTRQLL  336 (430)
Q Consensus       304 v~~i~~~~~~---------~~l~s~~-~dg~i~iwd~~~~~~~  336 (430)
                      -.|.-|+.+.         .++++++ .+..+++|.....+++
T Consensus       286 ~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  286 RVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            3333344321         2344444 4456999998888877

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.56  E-value=0.6  Score=42.79  Aligned_cols=160  Identities=14%  Similarity=0.082  Sum_probs=77.0

Q ss_pred             ceEEeeecCC--CceEEEEEcCCCCEEEEEe--------------------CCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154          153 TVKSWNVCAS--GTIAFSKVDISEKFSLFGG--------------------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (430)
Q Consensus       153 ~i~~~~~~~~--~~i~~~~~~~~~~~l~~~~--------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  210 (430)
                      .+..|.....  ..-..+-+.|..+.+++..                    ...++.+||+.+.+.+.++......    
T Consensus       169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g----  244 (461)
T PF05694_consen  169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG----  244 (461)
T ss_dssp             EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE----
T ss_pred             ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC----
Confidence            3445554322  2234566677777777643                    2457999999999998887664311    


Q ss_pred             cCCcceeEEEEeecCCCCEEEE-EeCCCcEEEEEC-CCCC---cceEEEeec-----------------CCCeEEEEecC
Q 014154          211 FTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLYDT-SAQR---RPVMSFDFR-----------------ETPIKAVAEEP  268 (430)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~-~~~~---~~~~~~~~~-----------------~~~i~~~~~sp  268 (430)
                         .-+..+.|.-.|+..+=++ +.-..+|..|-- ..+.   +.+..+...                 ..-|+.|.+|.
T Consensus       245 ---~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl  321 (461)
T PF05694_consen  245 ---QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL  321 (461)
T ss_dssp             ---EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred             ---CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence               2356788865666654333 334555555533 2221   011122110                 23578999999


Q ss_pred             CCCEEEEEe-CCCcEEEEEccCC---eEEeeeeCC---------------CCCCeEEEEecCCCCeEEEE
Q 014154          269 DSFNIYIGN-GSGDLASVDIRTG---KLLGCFIGK---------------CSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       269 ~~~~l~~~~-~d~~i~iwd~~~~---~~~~~~~~~---------------~~~~v~~i~~~~~~~~l~s~  319 (430)
                      |.++|+.++ .+|.|+.||+...   +++.++.-.               ..+...-+..|.||+.|...
T Consensus       322 DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  322 DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            999998877 6799999999753   344333210               01223567777888777554

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.47  E-value=0.69  Score=42.44  Aligned_cols=235  Identities=11%  Similarity=0.082  Sum_probs=90.2

Q ss_pred             cceeeec-CCCceEEEEccCCCCCcceeeeecCC---CC--CCcceeeeeecCCCCCceeEE--eecC----CeEEEecC
Q 014154           15 LRALTFD-SLGLIKVIEARGEHGGVPKVVERWGD---PH--SSNCVLAASIDDSQNDPLLAV--ARKN----GLTDILNP   82 (430)
Q Consensus        15 ~~l~t~~-~dg~i~vw~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~p~g~~l~~--g~~d----g~i~iwd~   82 (430)
                      -+|+..+ ..+.|.|.|..+.+ ..+++.+.+..   +.  +-..-..+  .--|+|+++++  |+.+    |-+.+.|-
T Consensus        88 r~Li~PgL~SsrIyviD~~~dP-r~P~l~KvIe~~ev~~k~g~s~PHT~--Hclp~G~imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   88 RYLILPGLRSSRIYVIDTKTDP-RKPRLHKVIEPEEVFEKTGLSRPHTV--HCLPDGRIMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -EEEEEBTTT--EEEEE--S-T-TS-EEEEEE-HHHHHHHH-EEEEEEE--EE-SS--EEEEEEEETTS-S--EEEEE-T
T ss_pred             CcEEeeeeccCcEEEEECCCCC-CCCceEeeeCHHHHHhhcCCCCCcee--eecCCccEEEEeccCCCCCCCCcEEEEcC
Confidence            4455544 78899999998753 33445444442   11  10001111  11467777776  3333    45778887


Q ss_pred             CCCcccceeeccCCCCCCCCCCceEEEE-EeecCcccccccCceEEEEc--------------------cCCeeEEEEee
Q 014154           83 LNGDLRVAISNAGDSGAQPEDDGIVGLH-LFKRQREESSSRSRTLLTCT--------------------TKGKASMRSIE  141 (430)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~v~~~~  141 (430)
                      ++.+.....+.-       ......+.. ||....       +.+++..                    .++.+.+|++.
T Consensus       165 ~tf~v~g~We~~-------~~~~~~gYDfw~qpr~-------nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~  230 (461)
T PF05694_consen  165 ETFEVKGRWEKD-------RGPQPFGYDFWYQPRH-------NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS  230 (461)
T ss_dssp             TT--EEEE--SB--------TT------EEEETTT-------TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred             ccccccceeccC-------CCCCCCCCCeEEcCCC-------CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence            665544443320       001111122 233322       2333322                    24566666654


Q ss_pred             ecCccccCCCcceEEeeecCCC-ceEEEEEcC--CCCEEEEE-eCCCeEEEEEC-CCCe----eeEeeCCCCCCCCCCcC
Q 014154          142 VTKVSAESSCSTVKSWNVCASG-TIAFSKVDI--SEKFSLFG-GKGVEVNVWDL-DKCE----KIWTAKPPPKNSLGIFT  212 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~~~-~i~~~~~~~--~~~~l~~~-~~d~~i~~~d~-~~~~----~~~~~~~~~~~~~~~~~  212 (430)
                      ...        .++..++...+ ....+.|..  +..+-+++ ....+|..|-- +.++    .+..+.....+.-.+..
T Consensus       231 ~r~--------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~  302 (461)
T PF05694_consen  231 TRK--------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE  302 (461)
T ss_dssp             TTE--------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred             CCc--------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence            332        44555554332 344566643  44443333 34445555533 3332    22222222111111111


Q ss_pred             --------CcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceEEEeecC------------------CCeEEEE
Q 014154          213 --------PTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSFDFRE------------------TPIKAVA  265 (430)
Q Consensus       213 --------~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~------------------~~i~~~~  265 (430)
                              +.-|+.+..  +.|.++|..++ ..|.|+.||+.....|...-+-.-                  +...-+.
T Consensus       303 ml~~~~~~P~LitDI~i--SlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq  380 (461)
T PF05694_consen  303 MLKPFGAVPPLITDILI--SLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ  380 (461)
T ss_dssp             GGGGG-EE------EEE---TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred             cccccccCCCceEeEEE--ccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence                    244677777  78888877665 589999999998776655432110                  1224566


Q ss_pred             ecCCCCEEEEE
Q 014154          266 EEPDSFNIYIG  276 (430)
Q Consensus       266 ~sp~~~~l~~~  276 (430)
                      .|.||+.|+..
T Consensus       381 lS~DGkRlYvT  391 (461)
T PF05694_consen  381 LSLDGKRLYVT  391 (461)
T ss_dssp             E-TTSSEEEEE
T ss_pred             EccCCeEEEEE
Confidence            77777777654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.44  E-value=0.83  Score=42.97  Aligned_cols=197  Identities=15%  Similarity=0.155  Sum_probs=107.1

Q ss_pred             EEEEEcCCCCEEEEE-eCCC----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---
Q 014154          166 AFSKVDISEKFSLFG-GKGV----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---  237 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~-~~d~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---  237 (430)
                      ..+.++|++++++.+ +..|    .|+++|+++++.+......          .....+.|  .+++..|+....+.   
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~----------~~~~~~~W--~~d~~~~~y~~~~~~~~  194 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN----------PKFSSVSW--SDDGKGFFYTRFDEDQR  194 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE----------EESEEEEE--CTTSSEEEEEECSTTTS
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc----------cccceEEE--eCCCCEEEEEEeCcccc
Confidence            357889999998865 3333    4999999999776432111          11223888  78878776665433   


Q ss_pred             --------cEEEEECCCCCcc-eEEEeecCCC--eEEEEecCCCCEEEEEeCC----CcEEEEEccCC----eEEeeeeC
Q 014154          238 --------QVRLYDTSAQRRP-VMSFDFRETP--IKAVAEEPDSFNIYIGNGS----GDLASVDIRTG----KLLGCFIG  298 (430)
Q Consensus       238 --------~i~iwd~~~~~~~-~~~~~~~~~~--i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~----~~~~~~~~  298 (430)
                              .|+.|.+.+.... ...+......  ...+..++++++|+.....    ..+.+.|+..+    .....+..
T Consensus       195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~  274 (414)
T PF02897_consen  195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP  274 (414)
T ss_dssp             S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred             cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC
Confidence                    3788888875432 3445443333  5688899999998865432    35788888774    22233333


Q ss_pred             CCCCCeEEEEecCCCCeEEEEe---CCCcEEEEECCCCce--eeEEEeeccccceEEeeeccccccccccCCC--CceEe
Q 014154          299 KCSGSIRSIARHPTLPIIASCG---LDSYLRFWDIKTRQL--LSAVFLKQHLNEVVFDSAFADKEVANAAADA--PMLEI  371 (430)
Q Consensus       299 ~~~~~v~~i~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d--~~i~~  371 (430)
                      ...+....+... .+.+++...   .++.|...++.+...  ...+.+.......+..+....+..++....+  ..|.+
T Consensus       275 ~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v  353 (414)
T PF02897_consen  275 REDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRV  353 (414)
T ss_dssp             SSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEE
Confidence            213333444443 443444332   345677777776553  1212122221234555555444433444333  45667


Q ss_pred             cCCC
Q 014154          372 QNGN  375 (430)
Q Consensus       372 ~~~~  375 (430)
                      ++..
T Consensus       354 ~~~~  357 (414)
T PF02897_consen  354 YDLD  357 (414)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            7776

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.044  Score=55.18  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=94.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeE--eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC
Q 014154          162 SGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg  237 (430)
                      .-.+..+...++....++...  +-.|+.||+++-....  +..................++.|.+.+ ....+.+..|+
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dl  178 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDL  178 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhcccc
Confidence            345666666677665554433  3378999997532211  011111111223333556777884322 22456667899


Q ss_pred             cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC---CCCCCeEEEEecCCCC
Q 014154          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLP  314 (430)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~  314 (430)
                      .|++..+......+..+.. ....++++|+|.|+.+++|-..|++.-|-. +.+....+..   .....|.+|+|-....
T Consensus       179 sl~V~~~~~~~~~v~s~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e  256 (1405)
T KOG3630|consen  179 SLRVKSTKQLAQNVTSFPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE  256 (1405)
T ss_pred             chhhhhhhhhhhhhcccCc-ccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence            9999887753333333332 357899999999999999999999998875 3443333332   2146899999987777


Q ss_pred             eEEEE
Q 014154          315 IIASC  319 (430)
Q Consensus       315 ~l~s~  319 (430)
                      +|++-
T Consensus       257 flvvy  261 (1405)
T KOG3630|consen  257 FLVVY  261 (1405)
T ss_pred             EEEEe
Confidence            76554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.38  E-value=0.83  Score=42.37  Aligned_cols=283  Identities=12%  Similarity=0.067  Sum_probs=143.2

Q ss_pred             CCceeEEeecCCeEEEecCCCCcccc--eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           64 NDPLLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        64 ~g~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      +.+.|++|+..|.++||+...+....  .+-..      .-..+|.++..=..-.    ......++...-..+.||.+.
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~------~l~~PILqv~~G~F~s----~~~~~~LaVLhP~kl~vY~v~  105 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET------QLKDPILQVECGKFVS----GSEDLQLAVLHPRKLSVYSVS  105 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEE------ecCCcEEEEEeccccC----CCCcceEEEecCCEEEEEEEE
Confidence            34689999999999999985433111  11000      0124665555422111    011355666777788888885


Q ss_pred             ecCcc--ccCCCcceEEeeecCCCceEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCc
Q 014154          142 VTKVS--AESSCSTVKSWNVCASGTIAFSKVDI----S-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT  214 (430)
Q Consensus       142 ~~~~~--~~~~~~~i~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  214 (430)
                      .....  .+..-..-.++...-......++.-|    . ..+|.+=+.||.+.+|+-+.......+...          -
T Consensus       106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~----------l  175 (418)
T PF14727_consen  106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF----------L  175 (418)
T ss_pred             ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC----------C
Confidence            43321  00111112233333333444444433    2 467888899999999998764433333321          1


Q ss_pred             ceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC--------------------Cc--ceEEEeecCCCeEE---EEecCC
Q 014154          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ--------------------RR--PVMSFDFRETPIKA---VAEEPD  269 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------------------~~--~~~~~~~~~~~i~~---~~~sp~  269 (430)
                      -.-.+.|  .+....|++++.+..|.-|....-                    ++  +-.++... ..+..   +.++..
T Consensus       176 lPgPl~Y--~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG-E~~l~i~v~~~~~~  252 (418)
T PF14727_consen  176 LPGPLCY--CPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG-EQALDIQVVRFSSS  252 (418)
T ss_pred             CCcCeEE--eecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC-ceeEEEEEEEcCCC
Confidence            1223466  566678888888888888865320                    11  11112211 22333   333333


Q ss_pred             CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec------CCC-CeEEEEeCCCcEEEEECCCCceeeEEEee
Q 014154          270 SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH------PTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLK  342 (430)
Q Consensus       270 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~------~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  342 (430)
                      ...+++-+ ...+.+.+. +|......+-. -.+.....|.      |+. ..++.++.++++.||.=  .+++....+ 
T Consensus       253 ~~~IvvLg-er~Lf~l~~-~G~l~~~krLd-~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~WsA~l-  326 (418)
T PF14727_consen  253 ESDIVVLG-ERSLFCLKD-NGSLRFQKRLD-YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLVWSAQL-  326 (418)
T ss_pred             CceEEEEe-cceEEEEcC-CCeEEEEEecC-CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEEEecCC-
Confidence            33444443 345666654 55554333321 1122222221      221 24888889999999863  344444222 


Q ss_pred             ccccceEEeee-cc-ccccccccCCCCceEecCCCC
Q 014154          343 QHLNEVVFDSA-FA-DKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       343 ~~~~~~v~~~~-~s-~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      .+ ..+...++ |. .+|.+++-+.+|.+.+-=.-.
T Consensus       327 ~~-~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  327 PH-VPVALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             CC-CCEEEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            11 22212222 21 255668888889888764443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.35  E-value=0.013  Score=53.74  Aligned_cols=104  Identities=16%  Similarity=0.058  Sum_probs=65.6

Q ss_pred             cCCCCEEEEEe---------CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceee
Q 014154          267 EPDSFNIYIGN---------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       267 sp~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  337 (430)
                      |||+++++...         ..+.+.+||+.+++.......  ...+....|||+|+.++... ++.|++++..++...+
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            57887777743         246799999999876544433  46788999999999998885 6789999988774443


Q ss_pred             EEEeeccccc----------------eEEeeeccccccc-c-ccCCCCceEecCCC
Q 014154          338 AVFLKQHLNE----------------VVFDSAFADKEVA-N-AAADAPMLEIQNGN  375 (430)
Q Consensus       338 ~~~~~~~~~~----------------~v~~~~~s~~g~~-~-~~~~d~~i~~~~~~  375 (430)
                       +...|. ..                .-..+-|||||+. + ..-++..+..+...
T Consensus        78 -lT~dg~-~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~  131 (353)
T PF00930_consen   78 -LTTDGE-PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP  131 (353)
T ss_dssp             -SES--T-TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE
T ss_pred             -eccccc-eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEee
Confidence             223331 11                1246779999998 3 34456666655443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PHA02713 hypothetical protein; Provisional

Probab=96.24  E-value=0.19  Score=49.05  Aligned_cols=182  Identities=10%  Similarity=0.124  Sum_probs=88.9

Q ss_pred             CCCEEEEEeCC------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-----cEEE
Q 014154          173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRL  241 (430)
Q Consensus       173 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~i  241 (430)
                      ++...+.|+.+      ..+..||..+..-. .+.... ..     ......+.+    ++.+.+.|+.++     .+..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~-~~-----R~~~~~~~~----~g~IYviGG~~~~~~~~sve~  371 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMI-KN-----RCRFSLAVI----DDTIYAIGGQNGTNVERTIEC  371 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCc-ch-----hhceeEEEE----CCEEEEECCcCCCCCCceEEE
Confidence            55666667643      34778887665321 111100 00     011222333    677888888764     4788


Q ss_pred             EECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCC-----------------------CcEEEEEccCCeEE--
Q 014154          242 YDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----------------------GDLASVDIRTGKLL--  293 (430)
Q Consensus       242 wd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----------------------~~i~iwd~~~~~~~--  293 (430)
                      ||..+..  ...+..   .......++  -++...+.|+.+                       ..+..||..+.+-.  
T Consensus       372 Ydp~~~~--W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v  447 (557)
T PHA02713        372 YTMGDDK--WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL  447 (557)
T ss_pred             EECCCCe--EEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec
Confidence            9988632  111111   111111222  256677777654                       24778888776542  


Q ss_pred             eeeeCCCCCCeEEEEecCCCCeEEEEeCC------CcEEEEECCC-CceeeEEEeeccccceEEeeeccccccc-cccCC
Q 014154          294 GCFIGKCSGSIRSIARHPTLPIIASCGLD------SYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD  365 (430)
Q Consensus       294 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~  365 (430)
                      ..+... ......+.+  ++.+.+.||.+      ..+..||..+ .+-...-.+..+...  .+++. -+|++ +.|+.
T Consensus       448 ~~m~~~-r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~--~~~~~-~~~~iyv~Gg~  521 (557)
T PHA02713        448 PNFWTG-TIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA--LHTIL-HDNTIMMLHCY  521 (557)
T ss_pred             CCCCcc-cccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc--ceeEE-ECCEEEEEeee
Confidence            222111 111122223  56677777754      2467899886 333222112222111  12222 26666 88888


Q ss_pred             CC--ceEecCCC
Q 014154          366 AP--MLEIQNGN  375 (430)
Q Consensus       366 d~--~i~~~~~~  375 (430)
                      ++  .+..||..
T Consensus       522 ~~~~~~e~yd~~  533 (557)
T PHA02713        522 ESYMLQDTFNVY  533 (557)
T ss_pred             cceeehhhcCcc
Confidence            88  44445443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.01  E-value=1  Score=39.87  Aligned_cols=151  Identities=12%  Similarity=0.089  Sum_probs=81.2

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE-eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc-CCe
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGK  291 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~  291 (430)
                      ..+..+..  .+++.+++++.....+.-||.-...  -... ......|.++.|+|++.+.+++ ..|.|++=+.. ...
T Consensus       145 gs~~~~~r--~~dG~~vavs~~G~~~~s~~~G~~~--w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  145 GSINDITR--SSDGRYVAVSSRGNFYSSWDPGQTT--WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             --EEEEEE---TTS-EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             ceeEeEEE--CCCCcEEEEECcccEEEEecCCCcc--ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            45777776  7899988887666666778865321  2222 2235789999999998776655 88888887622 222


Q ss_pred             EEee----eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCC
Q 014154          292 LLGC----FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAP  367 (430)
Q Consensus       292 ~~~~----~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~  367 (430)
                      ....    +... .-.+..++|.+++...++|+ .|.+ +.....|+.-............++.+.|.++.+-.+.+.+|
T Consensus       220 ~w~~~~~~~~~~-~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  220 TWSEPIIPIKTN-GYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             EE---B-TTSS---S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STT
T ss_pred             ccccccCCcccC-ceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCc
Confidence            1111    1111 33588999999887777665 5544 34555565544421112334456888998776667777788


Q ss_pred             ceEec
Q 014154          368 MLEIQ  372 (430)
Q Consensus       368 ~i~~~  372 (430)
                      .|.-|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77655

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.95  E-value=0.61  Score=44.15  Aligned_cols=120  Identities=12%  Similarity=-0.010  Sum_probs=71.1

Q ss_pred             CceEEEEEcCC----CCEEEEEeCCCeEEEEECCC-----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154          163 GTIAFSKVDIS----EKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (430)
Q Consensus       163 ~~i~~~~~~~~----~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  233 (430)
                      ..|..+.|.|-    ...|++......|.+|.+..     .+.+..-..+-.+.+    +.-...+.|  +|....|++-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~----pvLpQGCVW--HPk~~iL~VL  130 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF----PVLPQGCVW--HPKKAILTVL  130 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc----ccCCCcccc--cCCCceEEEE
Confidence            46888999883    34555667777999999852     222222111111111    122345678  6777777766


Q ss_pred             eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-CcEEEEEcc
Q 014154          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDIR  288 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~  288 (430)
                      .....-.+++.+.....+..--...+.|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus       131 T~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  131 TARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             ecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            5555545666665443333222345789999999999888766433 345678743

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.90  E-value=1  Score=38.98  Aligned_cols=145  Identities=11%  Similarity=0.059  Sum_probs=85.2

Q ss_pred             ceEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154          164 TIAFSKVDISEKFSLFGG---KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  240 (430)
                      .+...++++++..++...   ....++++......... +..           ..+....|  ++++...+....+...+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g-----------~~l~~PS~--d~~g~~W~v~~~~~~~~   90 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-LTG-----------GSLTRPSW--DPDGWVWTVDDGSGGVR   90 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-ccC-----------Cccccccc--cCCCCEEEEEcCCCceE
Confidence            678889999998887655   33345555443221111 111           23555677  77777776666666666


Q ss_pred             EEE-CCCCCcceEEEeecC--CCeEEEEecCCCCEEEEEe---CCCcEEEEEcc---CC--e----EEeeeeCCCCCCeE
Q 014154          241 LYD-TSAQRRPVMSFDFRE--TPIKAVAEEPDSFNIYIGN---GSGDLASVDIR---TG--K----LLGCFIGKCSGSIR  305 (430)
Q Consensus       241 iwd-~~~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~---~d~~i~iwd~~---~~--~----~~~~~~~~~~~~v~  305 (430)
                      ++. ...+...........  ..|..+.+||||..++...   .++.|.+--+.   .+  .    .+...... ...+.
T Consensus        91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~-~~~v~  169 (253)
T PF10647_consen   91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL-LSDVT  169 (253)
T ss_pred             EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc-cCcce
Confidence            663 333332222222221  2899999999998887665   34667765443   22  1    11112122 45789


Q ss_pred             EEEecCCCCeEEEEeCCC
Q 014154          306 SIARHPTLPIIASCGLDS  323 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg  323 (430)
                      .+.|.+++.+++.+...+
T Consensus       170 ~v~W~~~~~L~V~~~~~~  187 (253)
T PF10647_consen  170 DVAWSDDSTLVVLGRSAG  187 (253)
T ss_pred             eeeecCCCEEEEEeCCCC
Confidence            999999998777665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.84  E-value=1.1  Score=44.25  Aligned_cols=155  Identities=12%  Similarity=0.094  Sum_probs=91.6

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeE------eeCCCC-----CCCCC--CcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIW------TAKPPP-----KNSLG--IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~------~~~~~~-----~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  240 (430)
                      .++++++. .+.|.||++.......      .+....     .....  ...+..|+.+....--+...|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66777655 5589999986432211      110000     00000  0022345555442123456899999999999


Q ss_pred             EEECCC-------C------------CcceEEEeecCCCeEEEEec--CCCCEEEEEeCCCcEEEEEccCC--eEEeeee
Q 014154          241 LYDTSA-------Q------------RRPVMSFDFRETPIKAVAEE--PDSFNIYIGNGSGDLASVDIRTG--KLLGCFI  297 (430)
Q Consensus       241 iwd~~~-------~------------~~~~~~~~~~~~~i~~~~~s--p~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~  297 (430)
                      +|.+.+       .            -.|...+.. ...+++++++  ...++||+++....|.||-+...  +....-.
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s  206 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS  206 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence            996531       0            012222332 3578899998  78889999998888888765432  1111101


Q ss_pred             CCCCCCeEEEEecCCC---C---eEEEEeCCCcEEEEEC
Q 014154          298 GKCSGSIRSIARHPTL---P---IIASCGLDSYLRFWDI  330 (430)
Q Consensus       298 ~~~~~~v~~i~~~~~~---~---~l~s~~~dg~i~iwd~  330 (430)
                      ..+...|.+|.|-++.   .   +|++++-.|.+.+|++
T Consensus       207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            0125578899997643   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PHA02713 hypothetical protein; Provisional

Probab=95.66  E-value=0.26  Score=48.08  Aligned_cols=149  Identities=13%  Similarity=0.165  Sum_probs=78.6

Q ss_pred             CCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC----------
Q 014154          173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----------  237 (430)
Q Consensus       173 ~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----------  237 (430)
                      ++...+.|+.++     ++..||..+.+  +.....-....     .....+++    ++.+.+.|+.++          
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~--W~~~~~mp~~r-----~~~~~~~~----~g~IYviGG~~~~~~~~~~~~~  419 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDK--WKMLPDMPIAL-----SSYGMCVL----DQYIYIIGGRTEHIDYTSVHHM  419 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCe--EEECCCCCccc-----ccccEEEE----CCEEEEEeCCCccccccccccc
Confidence            566667777653     47788887643  22211110000     11222333    677777777652          


Q ss_pred             -------------cEEEEECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCC------CcEEEEEccC-Ce--EEe
Q 014154          238 -------------QVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRT-GK--LLG  294 (430)
Q Consensus       238 -------------~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~-~~--~~~  294 (430)
                                   .+..||+.+.+= .+..+....... +++ .-+++..+.|+.+      ..+..||..+ .+  .+.
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~  497 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT  497 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeecCCCCcccccC-cEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence                         477788876321 111111111111 122 2246666677654      2467899887 44  333


Q ss_pred             eeeCCCCCCeEEEEecCCCCeEEEEeCCC--cEEEEECCCCceee
Q 014154          295 CFIGKCSGSIRSIARHPTLPIIASCGLDS--YLRFWDIKTRQLLS  337 (430)
Q Consensus       295 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~  337 (430)
                      .+... ......+.+  ++.+.++||.|+  .+..||..+.+-..
T Consensus       498 ~m~~~-r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~  539 (557)
T PHA02713        498 TTESR-LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH  539 (557)
T ss_pred             ccCcc-cccceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence            34332 223333334  778889999888  77888887766544

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.64  E-value=1.4  Score=38.68  Aligned_cols=256  Identities=13%  Similarity=0.054  Sum_probs=126.8

Q ss_pred             CCCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154            9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus         9 ~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      |+.--..+|+.|.++| +.+++.... .+..+...     ...+.-+.+.    |+-+.|++- .|+.+.++++..-...
T Consensus         2 c~~~~~~~L~vGt~~G-l~~~~~~~~-~~~~~i~~-----~~~I~ql~vl----~~~~~llvL-sd~~l~~~~L~~l~~~   69 (275)
T PF00780_consen    2 CADSWGDRLLVGTEDG-LYVYDLSDP-SKPTRILK-----LSSITQLSVL----PELNLLLVL-SDGQLYVYDLDSLEPV   69 (275)
T ss_pred             CcccCCCEEEEEECCC-EEEEEecCC-ccceeEee-----cceEEEEEEe----cccCEEEEE-cCCccEEEEchhhccc
Confidence            3333457899999999 889988332 11111111     1113333332    333344443 4599999998755443


Q ss_pred             ceeec-cCCCC--CCCCCCceEEEEEee-cCcccccccCceEEEEccCCeeEEEEeeecCccccCCC-cceEEeeecCCC
Q 014154           89 VAISN-AGDSG--AQPEDDGIVGLHLFK-RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSC-STVKSWNVCASG  163 (430)
Q Consensus        89 ~~~~~-~~~~~--~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-~~i~~~~~~~~~  163 (430)
                      ..... ..+..  .........+..++. ...    ......+.......+.++.......    .. ..++-+.+  ..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~----~~~~~~L~va~kk~i~i~~~~~~~~----~f~~~~ke~~l--p~  139 (275)
T PF00780_consen   70 STSAPLAFPKSRSLPTKLPETKGVSFFAVNGG----HEGSRRLCVAVKKKILIYEWNDPRN----SFSKLLKEISL--PD  139 (275)
T ss_pred             cccccccccccccccccccccCCeeEEeeccc----cccceEEEEEECCEEEEEEEECCcc----cccceeEEEEc--CC
Confidence            31110 00000  000000111122222 000    0113444455555777777654211    11 23333333  47


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC---CCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS---LGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  240 (430)
                      .+..++|.  ++.++.|..+ ...+.|+.++....-+.......   .......++..+..   +++.+|++  .+..-.
T Consensus       140 ~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~Ll~--~~~~g~  211 (275)
T PF00780_consen  140 PPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL---SDNEFLLC--YDNIGV  211 (275)
T ss_pred             CcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe---CCceEEEE--ecceEE
Confidence            78888887  6777777765 58888998765543322111100   00001122333333   34555654  243444


Q ss_pred             EEECCCCCcce-EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC
Q 014154          241 LYDTSAQRRPV-MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (430)
Q Consensus       241 iwd~~~~~~~~-~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  299 (430)
                      +.|... +... ..+... ....++++.  ..+|++.+. +.|.||++.++++++.+...
T Consensus       212 fv~~~G-~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~  266 (275)
T PF00780_consen  212 FVNKNG-EPSRKSTIQWS-SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLP  266 (275)
T ss_pred             EEcCCC-CcCcccEEEcC-CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence            445543 3222 244433 355666664  347777655 55999999999999988864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.60  E-value=1.7  Score=39.46  Aligned_cols=177  Identities=15%  Similarity=0.132  Sum_probs=88.2

Q ss_pred             EEcCCCCEEEEEeC---CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154          169 KVDISEKFSLFGGK---GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       169 ~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  245 (430)
                      +|.++|+.|+.++.   ...+++.|+.+++...--......         ......  +++.+.++.......|+-.|+.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~---------~~g~~~--s~~~~~~~Yv~~~~~l~~vdL~  110 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN---------TFGGFL--SPDDRALYYVKNGRSLRRVDLD  110 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B----------TTT-EE---TTSSEEEEEETTTEEEEEETT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC---------ccceEE--ecCCCeEEEEECCCeEEEEECC
Confidence            45678877776655   446888899888766543332211         112233  6777777766667789999999


Q ss_pred             CCCcceEEEeecCCCeEEEEe--cCCCCEEEEEe---C-------------------CCcEEEEEccCCeEEeeeeCCCC
Q 014154          246 AQRRPVMSFDFRETPIKAVAE--EPDSFNIYIGN---G-------------------SGDLASVDIRTGKLLGCFIGKCS  301 (430)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~--sp~~~~l~~~~---~-------------------d~~i~iwd~~~~~~~~~~~~~~~  301 (430)
                      +.+. ...+......+-...|  +.++..++-.-   .                   ...|.-.|+.+|+....+..  .
T Consensus       111 T~e~-~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~--~  187 (386)
T PF14583_consen  111 TLEE-RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED--T  187 (386)
T ss_dssp             T--E-EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE--S
T ss_pred             cCcE-EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec--C
Confidence            8653 3445555555544555  34555543221   1                   13466678888887666664  5


Q ss_pred             CCeEEEEecCCCCeEEEEeCCC-----cEEEEECCC-CceeeEEEeeccccceEEeeeccccccc
Q 014154          302 GSIRSIARHPTLPIIASCGLDS-----YLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~~dg-----~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      ..+..+.|+|...-+++=+..|     .-|||-+++ +.....+.-. .....+..=-|.|||..
T Consensus       188 ~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~  251 (386)
T PF14583_consen  188 DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGST  251 (386)
T ss_dssp             S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-
T ss_pred             ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCE
Confidence            6889999999775555443322     136665543 3333332111 12344555667888775

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.49  E-value=1.5  Score=37.99  Aligned_cols=140  Identities=16%  Similarity=0.071  Sum_probs=83.2

Q ss_pred             ceeEEEEeecCCCCEEEEEe---CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEE-ccCC
Q 014154          215 WFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD-IRTG  290 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd-~~~~  290 (430)
                      .+.+.+.  ++++..++...   ....++++....  .....+.+  ..+....|++++...+....+...+++. ...+
T Consensus        25 ~~~s~Av--S~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   25 DVTSPAV--SPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             cccceEE--CCCCCeEEEEEEcCCCCEEEEEcCCC--cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            4677788  88998777655   333455555443  22233333  3788889999987777766666667663 3333


Q ss_pred             eEE-eeeeCCC-CCCeEEEEecCCCCeEEEEe---CCCcEEEEECC---CC--cee-eEEEeeccccceEEeeecccccc
Q 014154          291 KLL-GCFIGKC-SGSIRSIARHPTLPIIASCG---LDSYLRFWDIK---TR--QLL-SAVFLKQHLNEVVFDSAFADKEV  359 (430)
Q Consensus       291 ~~~-~~~~~~~-~~~v~~i~~~~~~~~l~s~~---~dg~i~iwd~~---~~--~~~-~~~~~~~~~~~~v~~~~~s~~g~  359 (430)
                      ... ..+.... ...|..+.+||||..++...   .++.|.|=-+.   .+  ..+ ..+.+.......+.+++|.+++.
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            321 1222110 22899999999998876665   35677776543   23  111 11111111134568999999999


Q ss_pred             c
Q 014154          360 A  360 (430)
Q Consensus       360 ~  360 (430)
                      +
T Consensus       179 L  179 (253)
T PF10647_consen  179 L  179 (253)
T ss_pred             E
Confidence            8

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.49  E-value=0.74  Score=42.44  Aligned_cols=140  Identities=15%  Similarity=0.117  Sum_probs=76.8

Q ss_pred             cceeEEEEeecCCCCEEEEEe-----------CCC-cEEEEECCCC--Cc-ceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154          214 TWFTSAAFLSIDDHRKFVAGT-----------NDH-QVRLYDTSAQ--RR-PVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~-----------~dg-~i~iwd~~~~--~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (430)
                      .....++|  .++|+++++..           ..+ .|.+++-.++  .. ....+.........+++.+++  |+++..
T Consensus        14 ~~P~~ia~--d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~   89 (367)
T TIGR02604        14 RNPIAVCF--DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP   89 (367)
T ss_pred             CCCceeeE--CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC
Confidence            34677888  88888777653           223 6777765432  21 123333233456889999888  444444


Q ss_pred             CCcEEEEEccC-----Ce--EE-eeeeCC---CCCCeEEEEecCCCCeEEEEeCC-------------------CcEEEE
Q 014154          279 SGDLASVDIRT-----GK--LL-GCFIGK---CSGSIRSIARHPTLPIIASCGLD-------------------SYLRFW  328 (430)
Q Consensus       279 d~~i~iwd~~~-----~~--~~-~~~~~~---~~~~v~~i~~~~~~~~l~s~~~d-------------------g~i~iw  328 (430)
                      ...+++.|...     ++  .+ ..+...   +......+.|.|||.+.++-+..                   |.|.-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            44333445431     12  12 223221   12357789999999876655421                   345555


Q ss_pred             ECCCCceeeEEEeeccccceEEeeecccccccc
Q 014154          329 DIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAN  361 (430)
Q Consensus       329 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~  361 (430)
                      +..+++. ..+ ..+. .. .+.++|+++|.+.
T Consensus       170 ~pdg~~~-e~~-a~G~-rn-p~Gl~~d~~G~l~  198 (367)
T TIGR02604       170 NPDGGKL-RVV-AHGF-QN-PYGHSVDSWGDVF  198 (367)
T ss_pred             ecCCCeE-EEE-ecCc-CC-CccceECCCCCEE
Confidence            5554432 222 2333 33 3789999999883

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.37  E-value=1.5  Score=42.84  Aligned_cols=112  Identities=15%  Similarity=0.133  Sum_probs=74.0

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  246 (430)
                      -+.-+.-++..++-+....+.|||...+....+..-.        ....|..+.|.+.|+++.+++.+..+.|.+|--..
T Consensus        34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~--------~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R  105 (631)
T PF12234_consen   34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFS--------EDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR  105 (631)
T ss_pred             eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeec--------CCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence            3444444555555555567999999887754432211        12679999999899999999999999999986421


Q ss_pred             --------CCcceEEE--eecC-CCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154          247 --------QRRPVMSF--DFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (430)
Q Consensus       247 --------~~~~~~~~--~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~  288 (430)
                              ...++..+  ..++ .+|.+..|.++|.+++.+  ++.+.|+|-.
T Consensus       106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen  106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW  156 (631)
T ss_pred             hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence                    11223333  2333 578999999998655433  4678888753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.30  E-value=2.6  Score=41.31  Aligned_cols=147  Identities=18%  Similarity=0.208  Sum_probs=77.2

Q ss_pred             CCCEEEEEeCCCe-----EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC------cEEE
Q 014154          173 SEKFSLFGGKGVE-----VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRL  241 (430)
Q Consensus       173 ~~~~l~~~~~d~~-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~i  241 (430)
                      +|...++|+.||.     +-.||..+.+-  ........     .....-.+.+    ++.+.++|+.++      ++..
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W--~~va~m~~-----~r~~~gv~~~----~g~iYi~GG~~~~~~~l~sve~  448 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKW--TPVAPMLT-----RRSGHGVAVL----GGKLYIIGGGDGSSNCLNSVEC  448 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcc--cccCCCCc-----ceeeeEEEEE----CCEEEEEcCcCCCccccceEEE
Confidence            5777788888865     55666654322  11111000     0022223333    788888888554      5678


Q ss_pred             EECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCCCc-----EEEEEccCCeEEee--eeCCCCCCeEEEEecCCC
Q 014154          242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGD-----LASVDIRTGKLLGC--FIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       242 wd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~-----i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~  313 (430)
                      ||..+..- .+..+....... .++. -++.+.+.|+.|+.     |..||..+.+-...  +... ...+..+.+  ++
T Consensus       449 YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~-rs~~g~~~~--~~  523 (571)
T KOG4441|consen  449 YDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP-RSAVGVVVL--GG  523 (571)
T ss_pred             EcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc-cccccEEEE--CC
Confidence            88886431 011111111111 1222 25667788887763     77899887765332  2222 222333333  66


Q ss_pred             CeEEEEeCCC-----cEEEEECCCCce
Q 014154          314 PIIASCGLDS-----YLRFWDIKTRQL  335 (430)
Q Consensus       314 ~~l~s~~~dg-----~i~iwd~~~~~~  335 (430)
                      ...+.|+.||     +|..||..+.+-
T Consensus       524 ~ly~vGG~~~~~~l~~ve~ydp~~d~W  550 (571)
T KOG4441|consen  524 KLYAVGGFDGNNNLNTVECYDPETDTW  550 (571)
T ss_pred             EEEEEecccCccccceeEEcCCCCCce
Confidence            7778888876     466676665443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.29  E-value=0.46  Score=47.44  Aligned_cols=76  Identities=20%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEccC---------CeE--Ee-ee-------eCCCCCCeEEEEecCC---CCeE
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRT---------GKL--LG-CF-------IGKCSGSIRSIARHPT---LPII  316 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~---------~~~--~~-~~-------~~~~~~~v~~i~~~~~---~~~l  316 (430)
                      ..|..|.++|+|.+|+..+..|.+.+.=.+.         |+.  .. .+       ..+....|..+.|+|.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            3678899999999999988776544332211         111  11 11       1122568899999996   4788


Q ss_pred             EEEeCCCcEEEEECCCCc
Q 014154          317 ASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       317 ~s~~~dg~i~iwd~~~~~  334 (430)
                      +.-..|+++|+||+...+
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            888899999999997543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=95.24  E-value=1.2  Score=43.52  Aligned_cols=183  Identities=13%  Similarity=0.046  Sum_probs=85.9

Q ss_pred             CCCEEEEEeCCC------eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-----CcEEE
Q 014154          173 SEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRL  241 (430)
Q Consensus       173 ~~~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~i  241 (430)
                      ++..++.|+.++      .+..||..+.+-.. +......      ......+.+    ++.+++.|+.+     ..+..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~------R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~  362 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYP------RKNPGVTVF----NNRIYVIGGIYNSISLNTVES  362 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcc------cccceEEEE----CCEEEEEeCCCCCEecceEEE
Confidence            455666666532      47778877654321 1111100      011222233    67777888765     34778


Q ss_pred             EECCCCCcceEEEe---ecCCCeEEEEecCCCCEEEEEeCC------CcEEEEEccCCeEEe--eeeCCCCCCeEEEEec
Q 014154          242 YDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRTGKLLG--CFIGKCSGSIRSIARH  310 (430)
Q Consensus       242 wd~~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~  310 (430)
                      ||+.+..  .....   ...... +++ .-+++..+.|+.+      ..+..||+.+.+-..  .+... ......+.  
T Consensus       363 yd~~~~~--W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~--  435 (534)
T PHA03098        363 WKPGESK--WREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGGCAIY--  435 (534)
T ss_pred             EcCCCCc--eeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCceEEE--
Confidence            8887633  11111   111111 122 2356666666632      458899988765422  11111 11112222  


Q ss_pred             CCCCeEEEEeCCC--------cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC-----CceEecCCCC
Q 014154          311 PTLPIIASCGLDS--------YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA-----PMLEIQNGND  376 (430)
Q Consensus       311 ~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d-----~~i~~~~~~~  376 (430)
                      .++.+++.||.++        .+.+||..+.+-...-.+... ......+.+  ++.+ +.|+.+     +.+.+||...
T Consensus       436 ~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        436 HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence            3566667776432        388899887654322111111 111111222  5666 777654     3566666544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.01  E-value=1.8  Score=36.09  Aligned_cols=96  Identities=10%  Similarity=-0.015  Sum_probs=60.8

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC-----ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG-----TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                      ..+.-+.+.++.-|+......   ...+.-.++++...+     ..-.++++.+|++.++.-..++|...|..+|+.+.+
T Consensus       172 fY~iDsln~~V~a~dyd~~tG---~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e  248 (310)
T KOG4499|consen  172 FYYIDSLNYEVDAYDYDCPTG---DLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE  248 (310)
T ss_pred             EEEEccCceEEeeeecCCCcc---cccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence            445555666666676543321   111222344444321     223455667888888888889999999999999999


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  233 (430)
                      ++.+.         ..|++++|- .++-..+++.
T Consensus       249 iklPt---------~qitsccFg-Gkn~d~~yvT  272 (310)
T KOG4499|consen  249 IKLPT---------PQITSCCFG-GKNLDILYVT  272 (310)
T ss_pred             EEcCC---------CceEEEEec-CCCccEEEEE
Confidence            88765         679999994 3443444443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.87  E-value=3.2  Score=38.31  Aligned_cols=143  Identities=13%  Similarity=0.031  Sum_probs=76.0

Q ss_pred             CceEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCC--Cee--eEeeCCCCCCCCCCcCCcceeEEEEeecCC
Q 014154          163 GTIAFSKVDISEKFSLFGG-----------KGV-EVNVWDLDK--CEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD  226 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~-----------~d~-~i~~~d~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  226 (430)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  +..  ...+....         .....+++  .++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l---------~~p~Gi~~--~~~   82 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL---------SMVTGLAV--AVG   82 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC---------CCccceeE--ecC
Confidence            3456788999888776642           122 666665432  221  11221111         33577788  677


Q ss_pred             CCEEEEEeCCCcEEEEECCCC-----Cc--ceEEEee----cCCCeEEEEecCCCCEEEEEeCC----------------
Q 014154          227 HRKFVAGTNDHQVRLYDTSAQ-----RR--PVMSFDF----RETPIKAVAEEPDSFNIYIGNGS----------------  279 (430)
Q Consensus       227 ~~~l~s~~~dg~i~iwd~~~~-----~~--~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d----------------  279 (430)
                      + +++ +......++.|....     +.  .+..+..    +......++|.|||.+.++-+..                
T Consensus        83 G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        83 G-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             C-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence            7 444 444433334454321     11  1111221    12346789999999766644421                


Q ss_pred             ---CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154          280 ---GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       280 ---~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                         +.|.-+|...++.. .+... -.....++|+|+|.++++-.
T Consensus       161 ~~~g~i~r~~pdg~~~e-~~a~G-~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       161 GLGGGLFRYNPDGGKLR-VVAHG-FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ccCceEEEEecCCCeEE-EEecC-cCCCccceECCCCCEEEEcc
Confidence               44566666555432 33322 23457899999998876644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.82  E-value=0.13  Score=30.01  Aligned_cols=31  Identities=16%  Similarity=0.239  Sum_probs=25.4

Q ss_pred             CCeEEEEecCCCC---EEEEEeCCCcEEEEEccC
Q 014154          259 TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRT  289 (430)
Q Consensus       259 ~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~  289 (430)
                      +.|.++.|+|...   +|+.+-.-+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4689999998554   777777779999999995

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.43  E-value=1.4  Score=41.82  Aligned_cols=148  Identities=10%  Similarity=0.061  Sum_probs=81.4

Q ss_pred             cceeEEEEeecCCCCEEEEEe---CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC----CEEEEEeCCCcEEEEE
Q 014154          214 TWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS----FNIYIGNGSGDLASVD  286 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~d~~i~iwd  286 (430)
                      .++..++|  . ||+.++-..   .+|.+++=|..    .+..|    ..|..+.|.|-+    ..|++.-....|.+|.
T Consensus        20 HPvhGlaW--T-DGkqVvLT~L~l~~gE~kfGds~----viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   20 HPVHGLAW--T-DGKQVVLTDLQLHNGEPKFGDSK----VIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ   88 (671)
T ss_pred             ccccceEe--c-CCCEEEEEeeeeeCCccccCCcc----Eeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence            45788899  3 566544322   23333332221    12222    458899998853    3455556778899998


Q ss_pred             cc-----CCeEEe----eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154          287 IR-----TGKLLG----CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       287 ~~-----~~~~~~----~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      +.     +++.+.    ++.....--...+.|||....|+.-.....=.+++++.....-...+  ...+.|.+.+|.+|
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~D  166 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACWTKD  166 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEecCc
Confidence            75     222221    22111011224678999998887766555444556553322222223  33466899999999


Q ss_pred             ccccccCCCCce--EecCC
Q 014154          358 EVANAAADAPML--EIQNG  374 (430)
Q Consensus       358 g~~~~~~~d~~i--~~~~~  374 (430)
                      |+.++..-...+  ++||.
T Consensus       167 G~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  167 GQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             CCEEEEEeCCeEEEEEecC
Confidence            998333333355  45553

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=94.40  E-value=2.9  Score=35.81  Aligned_cols=210  Identities=10%  Similarity=-0.049  Sum_probs=127.8

Q ss_pred             CCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCE
Q 014154          150 SCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (430)
Q Consensus       150 ~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (430)
                      .+.....|-+..+..-..++-.|+|..-+++...+.|--.|..+++....--...         .....+..  .|++..
T Consensus        49 ~~~s~~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G---------a~Phgiv~--gpdg~~  117 (353)
T COG4257          49 PDGSSAEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG---------ASPHGIVV--GPDGSA  117 (353)
T ss_pred             CCCccceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC---------CCCceEEE--CCCCCe
Confidence            4556667777777888889999999999998888888888888887654322221         22344455  677776


Q ss_pred             EEEEeCCCcEEEEECCCCCcceEEEee----cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154          230 FVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (430)
Q Consensus       230 l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  305 (430)
                      -++-+.. -|.-.|.++.+  +..+..    .........|.+.|++-+++... .---.|..+ ..+..+........+
T Consensus       118 Witd~~~-aI~R~dpkt~e--vt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~-~~i~vfpaPqG~gpy  192 (353)
T COG4257         118 WITDTGL-AIGRLDPKTLE--VTRFPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPAR-NVISVFPAPQGGGPY  192 (353)
T ss_pred             eEecCcc-eeEEecCcccc--eEEeecccccCCCcccceeeCCCccEEEeeccc-cceecCccc-CceeeeccCCCCCCc
Confidence            6653333 45555555433  333322    23567788999999998888632 111112211 223344433245668


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .|+..|+|..-++.-.++.|-..|..++... .+............+--+|.|.. ++.-..+.++.|+...
T Consensus       193 Gi~atpdGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~  263 (353)
T COG4257         193 GICATPDGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV  263 (353)
T ss_pred             ceEECCCCcEEEEeccccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence            8999999998887777778888888776322 22111111112234455667777 7766666776666544

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.26  E-value=3.3  Score=35.89  Aligned_cols=175  Identities=6%  Similarity=0.006  Sum_probs=97.2

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      +.++.|  +|+.+.|++......-.||=..+|+.+.++..-    +-   ...-.+.+....        ...++--.+.
T Consensus        88 vS~LTy--np~~rtLFav~n~p~~iVElt~~GdlirtiPL~----g~---~DpE~Ieyig~n--------~fvi~dER~~  150 (316)
T COG3204          88 VSSLTY--NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT----GF---SDPETIEYIGGN--------QFVIVDERDR  150 (316)
T ss_pred             ccceee--CCCcceEEEecCCCceEEEEecCCceEEEeccc----cc---CChhHeEEecCC--------EEEEEehhcc
Confidence            445555  677777888777777667766689888887641    00   011112333221        2334444556


Q ss_pred             eeEEEEeeecCccccCCCcceEEeeecC-CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCC-Cc
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG-IF  211 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~  211 (430)
                      .+.++.+..........+-.+.+=...+ +.....++|+|....|+.+-.-.-+.||.+.................. -.
T Consensus       151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~  230 (316)
T COG3204         151 ALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDL  230 (316)
T ss_pred             eEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccce
Confidence            6777766544321111111222222222 456778999999999998888888888877633211111111000000 00


Q ss_pred             CCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  246 (430)
                      -...|.++.|. .+.+.+|+-+.+++.+.-.|...
T Consensus       231 f~~DvSgl~~~-~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         231 FVLDVSGLEFN-AITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             Eeeccccceec-CCCCcEEEEecCCceEEEEecCC
Confidence            01346778884 44667888888888888888875

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.20  E-value=4.8  Score=37.51  Aligned_cols=26  Identities=0%  Similarity=-0.183  Sum_probs=21.1

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECC
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLD  192 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~  192 (430)
                      .+.+.+..+.|++++.+..|..|...
T Consensus       179 Pl~Y~~~tDsfvt~sss~~l~~Yky~  204 (418)
T PF14727_consen  179 PLCYCPRTDSFVTASSSWTLECYKYQ  204 (418)
T ss_pred             CeEEeecCCEEEEecCceeEEEecHH
Confidence            46777888889999988889888763

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.16  E-value=0.47  Score=39.95  Aligned_cols=70  Identities=14%  Similarity=-0.013  Sum_probs=51.0

Q ss_pred             ecCCCCEEEEEeCCCcEEEEEccCCeEEeee-------eC------CCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-------IG------KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       266 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~------~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      +..++.+|++-+.+|.+++||+.+++.+..-       ..      .....|..+.++.+|.-|++-+ +|..+.|+..-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            3456889999999999999999998765332       11      1246788888888887776664 57889998764


Q ss_pred             Ccee
Q 014154          333 RQLL  336 (430)
Q Consensus       333 ~~~~  336 (430)
                      +.-+
T Consensus        97 ~~W~  100 (219)
T PF07569_consen   97 GCWI  100 (219)
T ss_pred             ceeE
Confidence            4433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.15  E-value=0.74  Score=45.34  Aligned_cols=125  Identities=15%  Similarity=0.074  Sum_probs=75.7

Q ss_pred             CceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe-----e---eEe--eCCCCCCCCCCcCCcceeEEEEeecCCCCEE
Q 014154          163 GTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCE-----K---IWT--AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (430)
Q Consensus       163 ~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~-----~---~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (430)
                      ..|..|....  +...|+.+.+||.|.+|.+++-.     .   ...  ........+.......+.+++++.....++|
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence            3455554443  56788999999999999774210     0   000  0000011122233467888998433677788


Q ss_pred             EEEeCCCcEEEEECCCC--CcceEEEeecCCCeEEEEecCCC-----C-EEEEEeCCCcEEEEEc
Q 014154          231 VAGTNDHQVRLYDTSAQ--RRPVMSFDFRETPIKAVAEEPDS-----F-NIYIGNGSGDLASVDI  287 (430)
Q Consensus       231 ~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~i~~~~~sp~~-----~-~l~~~~~d~~i~iwd~  287 (430)
                      |+++....|.||-+...  +.....-..|...|-+|+|-++.     . +|++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888755431  21111111245678899996543     2 7788888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK13684 Ycf48-like protein; Provisional

Probab=94.14  E-value=4.4  Score=36.82  Aligned_cols=155  Identities=11%  Similarity=0.009  Sum_probs=88.8

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEE-EECCCCCcceEEEe-ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  291 (430)
                      ..+..+.+  .+++.++++ +..|.+.. +|-. ++. ..... .-...++++.+.++++.+++| ..|.+++=....+.
T Consensus       173 g~~~~i~~--~~~g~~v~~-g~~G~i~~s~~~g-g~t-W~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        173 GVVRNLRR--SPDGKYVAV-SSRGNFYSTWEPG-QTA-WTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             ceEEEEEE--CCCCeEEEE-eCCceEEEEcCCC-CCe-EEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence            45778888  677766655 45565443 2222 121 22222 234578999999999877765 56766432233333


Q ss_pred             EEeeeeCC---CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCc
Q 014154          292 LLGCFIGK---CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPM  368 (430)
Q Consensus       292 ~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~  368 (430)
                      .-.....+   ....+..+.+.|++..++ ++.+|.|. .....++.-.............+.+.|..+++...++..|.
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~  324 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGV  324 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCce
Confidence            22111111   123578899999877555 45677554 44444444333211112233467888888888888888899


Q ss_pred             eEecCCCC
Q 014154          369 LEIQNGND  376 (430)
Q Consensus       369 i~~~~~~~  376 (430)
                      |..|+...
T Consensus       325 il~~~~~~  332 (334)
T PRK13684        325 LLRYVGSA  332 (334)
T ss_pred             EEEecCCC
Confidence            98887654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.09  E-value=0.79  Score=46.78  Aligned_cols=134  Identities=10%  Similarity=-0.008  Sum_probs=79.6

Q ss_pred             cCCCCEEEE--EeCCCcEEEEECCCCCcce----EEEeec------CCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCC
Q 014154          224 IDDHRKFVA--GTNDHQVRLYDTSAQRRPV----MSFDFR------ETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTG  290 (430)
Q Consensus       224 ~~~~~~l~s--~~~dg~i~iwd~~~~~~~~----~~~~~~------~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~  290 (430)
                      .+|+...++  .+++-.|..||++......    .-+..|      ..-..++.|.|.- ...++...|+.|++..+...
T Consensus       109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~  188 (1405)
T KOG3630|consen  109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL  188 (1405)
T ss_pred             ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence            456554333  3444578999998632111    111111      1234577788754 23455667888888776533


Q ss_pred             eE-EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe-eccccceEEeeeccccccc
Q 014154          291 KL-LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       291 ~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~  360 (430)
                      .. +..+..  ....++++|+|.|..++.|-..|++.-|... ++....+.. .......|.++.|-....+
T Consensus       189 ~~~v~s~p~--t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  189 AQNVTSFPV--TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhcccCc--ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence            22 233333  5678999999999999999999999888653 443333211 1111344788888766554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.02  E-value=4.2  Score=39.93  Aligned_cols=40  Identities=10%  Similarity=0.061  Sum_probs=32.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                      ..+..+..+|+..+|+--...|.|.+-+.+..+...++..
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC  256 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence            4567788899999999999999999998887766666553

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.77  E-value=4.3  Score=35.48  Aligned_cols=206  Identities=13%  Similarity=0.091  Sum_probs=113.3

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCC------Ce-eeEeeCCCCCCCCCCcCCcceeEEEEee------cCC----C
Q 014154          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDK------CE-KIWTAKPPPKNSLGIFTPTWFTSAAFLS------IDD----H  227 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~------~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~----~  227 (430)
                      -+.|+++|.+.+.++....+...+||...      .+ .+..+.....    ...+...+.+.|..      +..    .
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~----~~~~~~PTGiVfN~~~~F~vt~~g~~~~  100 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP----LAAEGTPTGQVFNGSDTFVVSGEGITGP  100 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC----CCCCCCccEEEEeCCCceEEcCCCcccc
Confidence            45689999888888888888999999861      21 2222221111    00113466666631      111    1


Q ss_pred             CEEEEEeCCCcEEEEECCCCCc----ceEEEeec-CCCe-EEEEecC--CCCEEEEEe-CCCcEEEEEccCCeEE--eee
Q 014154          228 RKFVAGTNDHQVRLYDTSAQRR----PVMSFDFR-ETPI-KAVAEEP--DSFNIYIGN-GSGDLASVDIRTGKLL--GCF  296 (430)
Q Consensus       228 ~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~-~~~i-~~~~~sp--~~~~l~~~~-~d~~i~iwd~~~~~~~--~~~  296 (430)
                      ..++.+++||+|.-|...-...    ....+... ...| ..+++..  .+.+|+.+. ..++|.+||-.-.++.  ..+
T Consensus       101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence            2367789999999998643221    12223211 2333 3455543  355665554 5688999986433221  011


Q ss_pred             eCC--C--CCC-----------eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc----
Q 014154          297 IGK--C--SGS-----------IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK----  357 (430)
Q Consensus       297 ~~~--~--~~~-----------v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~----  357 (430)
                      ...  .  -.+           |+-..-.++.+.=+.+..-|.|-+||+. |++++++...+..... |.|+..|-    
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaP-WG~a~APa~FG~  258 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAP-WGLAIAPESFGS  258 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCC-ceeeeChhhhCC
Confidence            100  0  000           1111111222222233345789999974 8888887656665555 88888663    


Q ss_pred             --ccccc-cCCCCceEecCCCC
Q 014154          358 --EVANA-AADAPMLEIQNGND  376 (430)
Q Consensus       358 --g~~~~-~~~d~~i~~~~~~~  376 (430)
                        |.++. --.||+|..||...
T Consensus       259 ~sg~lLVGNFGDG~InaFD~~s  280 (336)
T TIGR03118       259 LSGALLVGNFGDGTINAYDPQS  280 (336)
T ss_pred             CCCCeEEeecCCceeEEecCCC
Confidence              44533 34699999999764

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.62  E-value=5.5  Score=37.01  Aligned_cols=143  Identities=12%  Similarity=0.000  Sum_probs=80.7

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCC-CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe-----EEeeee
Q 014154          224 IDDHRKFVAGTNDHQVRLYDTSAQ-RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK-----LLGCFI  297 (430)
Q Consensus       224 ~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~  297 (430)
                      .+++.+++.+.....++-||--.. ..+ ... .....++++.+.+++..++++ ..|.+. +....++     ......
T Consensus       247 ~~dG~~~~vg~~G~~~~s~d~G~~~W~~-~~~-~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~  322 (398)
T PLN00033        247 SPDGDYVAVSSRGNFYLTWEPGQPYWQP-HNR-ASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEAD  322 (398)
T ss_pred             cCCCCEEEEECCccEEEecCCCCcceEE-ecC-CCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecc
Confidence            567766666544433334443321 011 111 123568899999999888766 556543 3333443     122222


Q ss_pred             CC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEec
Q 014154          298 GK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ  372 (430)
Q Consensus       298 ~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~  372 (430)
                      .. ....+..+.|.+++..+++ +..|.+.... ..|+.-............++.+.|.++++....+.+|.|.-|
T Consensus       323 ~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        323 IKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             cCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            11 1235889999988775555 5778666553 444443332111222334689999888888777888887665

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=93.62  E-value=7.9  Score=38.04  Aligned_cols=106  Identities=19%  Similarity=0.237  Sum_probs=54.9

Q ss_pred             CCCEEEEEeCCC------eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc-----EEE
Q 014154          173 SEKFSLFGGKGV------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ-----VRL  241 (430)
Q Consensus       173 ~~~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~i  241 (430)
                      ++...++|+.++      ++..||..+..-..........       .......+    ++.+.+.|+.|+.     |..
T Consensus       427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-------~~~g~a~~----~~~iYvvGG~~~~~~~~~VE~  495 (571)
T KOG4441|consen  427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-------SGFGVAVL----NGKIYVVGGFDGTSALSSVER  495 (571)
T ss_pred             CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc-------ccceEEEE----CCEEEEECCccCCCccceEEE
Confidence            567777777554      4677777664332211111100       11222233    6788888888763     777


Q ss_pred             EECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCCC-----cEEEEEccCCe
Q 014154          242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGK  291 (430)
Q Consensus       242 wd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~  291 (430)
                      ||..+.+- .+..+......+..+.+  ++...++|+.||     +|..||..+.+
T Consensus       496 ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  496 YDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             EcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence            88887431 11111212222222222  466777787765     46666665544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.51  E-value=5.7  Score=36.02  Aligned_cols=76  Identities=17%  Similarity=0.231  Sum_probs=45.8

Q ss_pred             ceEEEeecCCCeEEEEecC-------CCCEEEEEeCCCcEEEEEccCCeEE---eeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          250 PVMSFDFRETPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLL---GCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp-------~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      |+..+..| ..+..+.|..       .+.+|++.-..+.|....+..+..+   ..+......++..+++.|||.+.++.
T Consensus       245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~  323 (331)
T PF07995_consen  245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD  323 (331)
T ss_dssp             -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred             cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence            34445444 5666777653       4556666666678888888755332   22222224479999999999988888


Q ss_pred             eCCCcEE
Q 014154          320 GLDSYLR  326 (430)
Q Consensus       320 ~~dg~i~  326 (430)
                      ..+|.|+
T Consensus       324 d~~G~iy  330 (331)
T PF07995_consen  324 DSDGKIY  330 (331)
T ss_dssp             -TTTTEE
T ss_pred             CCCCeEe
Confidence            7888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.51  E-value=0.46  Score=27.74  Aligned_cols=31  Identities=16%  Similarity=0.284  Sum_probs=25.9

Q ss_pred             CCeEEEEecCCC---CeEEEEeCCCcEEEEECCC
Q 014154          302 GSIRSIARHPTL---PIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       302 ~~v~~i~~~~~~---~~l~s~~~dg~i~iwd~~~  332 (430)
                      +.|.++.|+|..   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            368899999854   5888888889999999985

It contains a characteristic DLL sequence motif.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=93.47  E-value=6  Score=36.18  Aligned_cols=210  Identities=14%  Similarity=0.115  Sum_probs=112.4

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCce--eEEee-cC---CeEEEecCCC--Cc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPL--LAVAR-KN---GLTDILNPLN--GD   86 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~--l~~g~-~d---g~i~iwd~~~--~~   86 (430)
                      .+++..+..+-+.+||+.+      +.++.+..  +...-+.+.....-.|+.  ||+++ .+   .+|++|.+..  +.
T Consensus        69 SlIigTdK~~GL~VYdL~G------k~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~  140 (381)
T PF02333_consen   69 SLIIGTDKKGGLYVYDLDG------KELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE  140 (381)
T ss_dssp             -EEEEEETTTEEEEEETTS-------EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred             ceEEEEeCCCCEEEEcCCC------cEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence            5677888889999999998      56665532  222222222211112322  34443 32   4799997752  32


Q ss_pred             ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (430)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~  166 (430)
                       +..+... ...+......+.+++++.....    ..-..+....+|.+..|.+.....-. -....+|.|.+  ...+.
T Consensus       141 -L~~v~~~-~~p~~~~~~e~yGlcly~~~~~----g~~ya~v~~k~G~~~Qy~L~~~~~g~-v~~~lVR~f~~--~sQ~E  211 (381)
T PF02333_consen  141 -LTDVTDP-AAPIATDLSEPYGLCLYRSPST----GALYAFVNGKDGRVEQYELTDDGDGK-VSATLVREFKV--GSQPE  211 (381)
T ss_dssp             -EEE-CBT-TC-EE-SSSSEEEEEEEE-TTT------EEEEEEETTSEEEEEEEEE-TTSS-EEEEEEEEEE---SS-EE
T ss_pred             -ceEcCCC-CcccccccccceeeEEeecCCC----CcEEEEEecCCceEEEEEEEeCCCCc-EeeEEEEEecC--CCcce
Confidence             2222110 0011122345678888865321    11356667788988888886433200 01124566655  46889


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCC-----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC--CEEEEEeCCCcE
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQV  239 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i  239 (430)
                      .+..+....+|+.+-.+.-|+-|+.+.     +..+.......       ....|..+++....++  .+|+|.-.+++.
T Consensus       212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~-------l~aDvEGlaly~~~~g~gYLivSsQG~~sf  284 (381)
T PF02333_consen  212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDG-------LVADVEGLALYYGSDGKGYLIVSSQGDNSF  284 (381)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSS-------B-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred             EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccc-------cccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence            999999899999999998888888762     22222222111       1255777777544443  345555557789


Q ss_pred             EEEECCCCC
Q 014154          240 RLYDTSAQR  248 (430)
Q Consensus       240 ~iwd~~~~~  248 (430)
                      .+|+.....
T Consensus       285 ~Vy~r~~~~  293 (381)
T PF02333_consen  285 AVYDREGPN  293 (381)
T ss_dssp             EEEESSTT-
T ss_pred             EEEecCCCC
Confidence            999987543

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.35  E-value=2.5  Score=38.89  Aligned_cols=114  Identities=11%  Similarity=0.104  Sum_probs=74.2

Q ss_pred             ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee--CCCCCCCCCCcCCcceeEEEEeecCCCCEE
Q 014154          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA--KPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (430)
Q Consensus       153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (430)
                      ..--++....++|.++.|+++.+.||+--.+.+|.+++....+....+  ....+       ...|....|  ..+ .-+
T Consensus        57 VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k-------~~~IlGF~W--~~s-~e~  126 (657)
T KOG2377|consen   57 VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK-------NANILGFCW--TSS-TEI  126 (657)
T ss_pred             CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC-------cceeEEEEE--ecC-eeE
Confidence            444566777889999999999999999999999999998433222111  11110       134777777  333 344


Q ss_pred             EEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                      +.-... -+-+|-.......++..+.|...|.-..|.++.+.++.++
T Consensus       127 A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  127 AFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             EEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            443433 3566665554555666777878888888888876655443

>PRK10115 protease 2; Provisional

Probab=93.20  E-value=11  Score=38.22  Aligned_cols=110  Identities=7%  Similarity=0.054  Sum_probs=64.8

Q ss_pred             eEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---
Q 014154          165 IAFSKVDISEKFSLFGGK-----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---  236 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---  236 (430)
                      +..+.++|++++|+.+..     ...|++.|+.++..+......          . -..++|  .++++.|+....+   
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~----------~-~~~~~w--~~D~~~~~y~~~~~~~  195 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN----------V-EPSFVW--ANDSWTFYYVRKHPVT  195 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC----------c-ceEEEE--eeCCCEEEEEEecCCC
Confidence            556788999998886543     235888888877532211110          1 135788  6777766665442   


Q ss_pred             ---CcEEEEECCCCC-cceEEEeecCCCeE-EEEecCCCCEEEEEeC---CCcEEEEEc
Q 014154          237 ---HQVRLYDTSAQR-RPVMSFDFRETPIK-AVAEEPDSFNIYIGNG---SGDLASVDI  287 (430)
Q Consensus       237 ---g~i~iwd~~~~~-~~~~~~~~~~~~i~-~~~~sp~~~~l~~~~~---d~~i~iwd~  287 (430)
                         ..|+.+++.++. .-...+........ .+..+.++++++..+.   ++.+.+|+.
T Consensus       196 ~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        196 LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence               367888888762 12334443333333 3334547877765543   357888884

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=93.19  E-value=11  Score=38.43  Aligned_cols=329  Identities=11%  Similarity=0.020  Sum_probs=152.7

Q ss_pred             CCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCC--CCCCcceeeeeecCCCCC----ceeEEeecCCeEEEecC-
Q 014154           10 PGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGD--PHSSNCVLAASIDDSQND----PLLAVARKNGLTDILNP-   82 (430)
Q Consensus        10 ~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~g----~~l~~g~~dg~i~iwd~-   82 (430)
                      ..|....++.++.++.+...++..+  +    ++....  -...+.|+.+++  .+++    +++++|..+..+.+.-. 
T Consensus       495 ~~~n~sqVvvA~~~~~l~y~~i~~~--~----l~e~~~~~~e~evaCLDisp--~~d~~~~s~~~aVG~Ws~~~~~l~~~  566 (1096)
T KOG1897|consen  495 VSANASQVVVAGGGLALFYLEIEDG--G----LREVSHKEFEYEVACLDISP--LGDAPNKSRLLAVGLWSDISMILTFL  566 (1096)
T ss_pred             EeecceEEEEecCccEEEEEEeecc--c----eeeeeeheecceeEEEeccc--CCCCCCcceEEEEEeecceEEEEEEC
Confidence            3455556666666666666666653  1    111111  234556676665  3222    36788877666554433 


Q ss_pred             CCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC
Q 014154           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (430)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~  162 (430)
                      .+...+.....    ...--...|.-..+ ..+       ...++.+..+|.+.-+-+......-    ...+--.+. .
T Consensus       567 pd~~~~~~~~l----~~~~iPRSIl~~~~-e~d-------~~yLlvalgdG~l~~fv~d~~tg~l----sd~Kk~~lG-t  629 (1096)
T KOG1897|consen  567 PDLILITHEQL----SGEIIPRSILLTTF-EGD-------IHYLLVALGDGALLYFVLDINTGQL----SDRKKVTLG-T  629 (1096)
T ss_pred             CCcceeeeecc----CCCccchheeeEEe-ecc-------ceEEEEEcCCceEEEEEEEcccceE----ccccccccC-C
Confidence            22222222111    00000012221111 111       1588888888888777665432100    000000001 1


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeE-EEEeecCCCCEEEEEeCCCcEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS-AAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      .++.--.|+..+..-+.+..|.-..+|.-+..-....+....           +.. +.|..+.-...++++ ..+.+.+
T Consensus       630 ~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ke-----------v~~~c~f~s~a~~d~l~~~-~~~~l~i  697 (1096)
T KOG1897|consen  630 QPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKE-----------VNHMCPFNSDAYPDSLASA-NGGALTI  697 (1096)
T ss_pred             CCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHH-----------hhhhcccccccCCceEEEe-cCCceEE
Confidence            233333444444443444455555555543222211111111           111 112111123345554 3456666


Q ss_pred             EECCCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCC--------------CcEEEEEccCCeEEeeeeCCCCC---C
Q 014154          242 YDTSAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS--------------GDLASVDIRTGKLLGCFIGKCSG---S  303 (430)
Q Consensus       242 wd~~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--------------~~i~iwd~~~~~~~~~~~~~~~~---~  303 (430)
                      ..+..-++ -++++..+ .....+++.+...++++.+.-              ..++++|-.+.+.+...+-....   .
T Consensus       698 ~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~S  776 (1096)
T KOG1897|consen  698 GTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALS  776 (1096)
T ss_pred             EEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeee
Confidence            66554222 23444444 355667777654444444321              23778888777765443321122   3


Q ss_pred             eEEEEecCC-CCeEEEEe----------CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEec
Q 014154          304 IRSIARHPT-LPIIASCG----------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ  372 (430)
Q Consensus       304 v~~i~~~~~-~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~  372 (430)
                      |.+..|..| +.+++.|.          ..|.|.||.+..++.+..+. +....+.+.++.- -+|++ .++-...|++|
T Consensus       777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~-e~~v~Gav~aL~~-fngkl-lA~In~~vrLy  853 (1096)
T KOG1897|consen  777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA-ETVVKGAVYALVE-FNGKL-LAGINQSVRLY  853 (1096)
T ss_pred             eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee-eeeeccceeehhh-hCCeE-EEecCcEEEEE
Confidence            455558777 66777774          34788888887744444321 1122333333322 14554 33445789999


Q ss_pred             CCCCCcc
Q 014154          373 NGNDTQE  379 (430)
Q Consensus       373 ~~~~~~~  379 (430)
                      ++....+
T Consensus       854 e~t~~~e  860 (1096)
T KOG1897|consen  854 EWTTERE  860 (1096)
T ss_pred             Eccccce
Confidence            8877533

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.11  E-value=1.1  Score=41.01  Aligned_cols=162  Identities=17%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EeeCCC-CCCCCCCcCCccee-EEEEeecCCCCEEEEEeCCCcE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPP-PKNSLGIFTPTWFT-SAAFLSIDDHRKFVAGTNDHQV  239 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~-~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i  239 (430)
                      ..+..+-+.|+++.++.-+. ..+.++++.+.... +++... .++.     ...|+ .+..  -..+..+++++.||-|
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~-----~~~Vte~l~l--L~Gg~SLLv~~~dG~v  292 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDS-----RHQVTEQLYL--LSGGFSLLVVHEDGLV  292 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCch-----HHHHHHHHHH--HhCceeEEEEcCCCce
Confidence            45666788999999987766 58899988653221 111111 1100     01222 1111  1346678888999998


Q ss_pred             EEE-ECCCCCcc----eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC
Q 014154          240 RLY-DTSAQRRP----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (430)
Q Consensus       240 ~iw-d~~~~~~~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~  314 (430)
                      .-| |.+....+    ++.++....++..+.-..+.+-+++-+..|++..+.....+.+..-..  -..+.-+++||++.
T Consensus       293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~--~~~~~~~~~Sp~~~  370 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA--YQAPQLVAMSPNQA  370 (733)
T ss_pred             eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh--hcCcceeeeCcccc
Confidence            877 55543322    222222234444444333446677778888888876544444322222  23567789999999


Q ss_pred             eEEEEeCCCcEEEEECCCCce
Q 014154          315 IIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       315 ~l~s~~~dg~i~iwd~~~~~~  335 (430)
                      +|++- ..|.++++.+++..+
T Consensus       371 ~Ll~e-~~gki~~~~l~Nr~P  390 (733)
T COG4590         371 YLLSE-DQGKIRLAQLENRNP  390 (733)
T ss_pred             hheee-cCCceEEEEecCCCC
Confidence            98876 356688888765443

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=93.11  E-value=5.8  Score=34.96  Aligned_cols=91  Identities=15%  Similarity=0.105  Sum_probs=66.4

Q ss_pred             EEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC--------------------CC
Q 014154          264 VAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL--------------------DS  323 (430)
Q Consensus       264 ~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~--------------------dg  323 (430)
                      ..|+ +|++.++=+..|.+.-+|..+|+......-  .+....+.|.  |.+++++..                    ..
T Consensus       208 PRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~v--pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~C  282 (335)
T TIGR03032       208 PRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFL--PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGC  282 (335)
T ss_pred             CcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEEC--CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcc
Confidence            3454 677888888899999999988865433332  3466888886  777766632                    12


Q ss_pred             cEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       324 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      -|.|.|+++|..++.+.+.+.... +++++.-|.=+.
T Consensus       283 Gv~vidl~tG~vv~~l~feg~v~E-ifdV~vLPg~r~  318 (335)
T TIGR03032       283 GVAVIDLNSGDVVHWLRFEGVIEE-IYDVAVLPGVRR  318 (335)
T ss_pred             cEEEEECCCCCEEEEEEeCCceeE-EEEEEEecCCCC
Confidence            388899999999999888887555 589988887555

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.05  E-value=4.7  Score=33.73  Aligned_cols=93  Identities=15%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             eeEEEEeecCCCC-EEEEEeCCCcEEEEE--CCCCC----cceEEEee----cCCCeEEEEecCCCCEEEEEeCCCcEEE
Q 014154          216 FTSAAFLSIDDHR-KFVAGTNDHQVRLYD--TSAQR----RPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLAS  284 (430)
Q Consensus       216 v~~~~~~~~~~~~-~l~s~~~dg~i~iwd--~~~~~----~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d~~i~i  284 (430)
                      -+.++|  +.+.. +.++-+.+-+|.-||  ..++.    ..+..++.    ....--.+++..+|++.++.-..++|..
T Consensus       160 sNgl~W--d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  160 SNGLAW--DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK  237 (310)
T ss_pred             Cccccc--cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence            356777  44554 344556677787777  44432    11222221    1112234555667888888888999999


Q ss_pred             EEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154          285 VDIRTGKLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       285 wd~~~~~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      .|..+|+.+.++.-. ...|++++|--
T Consensus       238 ~dp~tGK~L~eiklP-t~qitsccFgG  263 (310)
T KOG4499|consen  238 VDPTTGKILLEIKLP-TPQITSCCFGG  263 (310)
T ss_pred             ECCCCCcEEEEEEcC-CCceEEEEecC
Confidence            999999999999887 88999999953

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=93.01  E-value=0.93  Score=38.16  Aligned_cols=65  Identities=12%  Similarity=0.107  Sum_probs=42.8

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcceEE------Ee-------ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC
Q 014154          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMS------FD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (430)
Q Consensus       225 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------~~-------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  290 (430)
                      .++.+|++-+.+|.+++||+.+.+..+..      +.       .....|..+.++.+|.-|++-+ +|..+.|+..-+
T Consensus        20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            36788999999999999999986542221      11       2335667777776776555543 466777776443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.01  E-value=1.5  Score=40.64  Aligned_cols=95  Identities=17%  Similarity=0.173  Sum_probs=57.9

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEE---EECCC-C----eeeEeeCCCCCCCCCCcCCcceeEEEEeec---------CCCCE
Q 014154          167 FSKVDISEKFSLFGGKGVEVNV---WDLDK-C----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSI---------DDHRK  229 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~---~d~~~-~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~  229 (430)
                      .++++|+++.|+.+..+..+.+   |+... +    .........-..    .....|+++.+.+-         +|...
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~----~~~e~ITsi~clpl~s~~~s~~~~dw~~   81 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDD----EPGECITSILCLPLSSQKRSTGGPDWTC   81 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccC----CCCCEEEEEEEEEeecccccCCCCCcEE
Confidence            4678899999998887766555   53311 1    111111111100    00146777766543         56789


Q ss_pred             EEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEec
Q 014154          230 FVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (430)
Q Consensus       230 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s  267 (430)
                      +++|..+|.|++|.... . .+..-..|..+|..|.+.
T Consensus        82 I~VG~ssG~vrfyte~G-~-LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   82 IAVGTSSGYVRFYTENG-V-LLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             EEEEecccEEEEEeccc-h-HHHHHhcCccceEEEEec
Confidence            99999999999998853 3 344444567777777763

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=92.97  E-value=10  Score=37.37  Aligned_cols=260  Identities=9%  Similarity=0.056  Sum_probs=129.7

Q ss_pred             cCCCCCceeEEeecCCeEEEecCC-CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC-eeEE
Q 014154           60 DDSQNDPLLAVARKNGLTDILNPL-NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG-KASM  137 (430)
Q Consensus        60 ~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v  137 (430)
                      +.+|+.+.+-.|=....|.-|=+. +.+.+..+.-       +....+.++.++......     ...+.|..++ ..++
T Consensus        34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi-------~pt~iV~~~dV~~~~~~~-----~~~~~glt~rKk~~l  101 (670)
T PF10395_consen   34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPI-------SPTTIVECCDVLEKSDGK-----KLYCVGLTERKKFKL  101 (670)
T ss_pred             ccCCCCceEEEEeccchhhheecCCCcceeEeecc-------CcCceEEEEEeEecCCCc-----EEEEEEEeeCCeeEE
Confidence            346666666555444445444332 3343333321       223455666666554311     3555554444 3455


Q ss_pred             EEeeecCc---cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE--eeCCCCCCCCCCcC
Q 014154          138 RSIEVTKV---SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFT  212 (430)
Q Consensus       138 ~~~~~~~~---~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~  212 (430)
                      ..+.....   ...........+.+.-...|..+.+.+++..+++.-.+|.|.+||...+....  .+....  ...+..
T Consensus       102 l~i~~~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~--~~~v~y  179 (670)
T PF10395_consen  102 LLIERKVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKS--SINVSY  179 (670)
T ss_pred             EEEEccCccccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccc--ccceeh
Confidence            55544311   11122234445555567889999999999999999999999999994322211  111111  001101


Q ss_pred             CcceeEEEEeecCCCCEEEEEeC-C---CcEEEEECCCCCcceEEEe---ecCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 014154          213 PTWFTSAAFLSIDDHRKFVAGTN-D---HQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGSGDLASV  285 (430)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~s~~~-d---g~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw  285 (430)
                      ...|.....  .....++++-+. +   -..+++.+......+..+.   .+........|..+...|+-- .+++|.+|
T Consensus       180 s~fv~~~~~--~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~y  256 (670)
T PF10395_consen  180 SKFVNDFEL--ENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSY  256 (670)
T ss_pred             hhhhccccc--ccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEE
Confidence            112222221  112334444333 2   2467888732222233333   122223333333333344333 67899999


Q ss_pred             EccCCeEEeeeeCC---CC--CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154          286 DIRTGKLLGCFIGK---CS--GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       286 d~~~~~~~~~~~~~---~~--~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      ++...+...++.-.   ..  ..+.++. .|..++++-+ .++.|++.|+.-...+..
T Consensus       257 sip~f~~~~tI~l~~ii~~~~~~~vSl~-~~s~nRvLLs-~~nkIyLld~~~~siLse  312 (670)
T PF10395_consen  257 SIPNFQIQKTISLPSIIDKESDDLVSLK-PPSPNRVLLS-VNNKIYLLDLKFESILSE  312 (670)
T ss_pred             EcCCceEEEEEEechhhccccccceEee-cCCCCeEEEE-cCCEEEEEeehhhhhhhh
Confidence            99888876665432   01  1233433 2333344433 466899999875555444

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.88  E-value=1.3  Score=41.41  Aligned_cols=78  Identities=18%  Similarity=0.188  Sum_probs=52.9

Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEEc---------cCCeEEee----------eeCCCCCCeEEEEecCCC---CeEE
Q 014154          260 PIKAVAEEPDSFNIYIGNGSGDLASVDI---------RTGKLLGC----------FIGKCSGSIRSIARHPTL---PIIA  317 (430)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~---------~~~~~~~~----------~~~~~~~~v~~i~~~~~~---~~l~  317 (430)
                      .|..+..++.|..++..+.+|.+.++=.         +.|+..-.          |.....-.+..++|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4567778999999999999997666531         23322111          111112356788999976   5677


Q ss_pred             EEeCCCcEEEEECCCCceee
Q 014154          318 SCGLDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       318 s~~~dg~i~iwd~~~~~~~~  337 (430)
                      .-+.|+.||+||+..-..+.
T Consensus       185 iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             EEecCcEEEEEecCCcchhh
Confidence            77889999999998766554

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.70  E-value=7.9  Score=35.45  Aligned_cols=190  Identities=10%  Similarity=0.096  Sum_probs=104.6

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee--cCCCCE--EEEEe-CC---CcEEEEE
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHRK--FVAGT-ND---HQVRLYD  243 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~--l~s~~-~d---g~i~iwd  243 (430)
                      |...+++....++-+.+||+. |+.+..+...           .++.+....  .-++..  |+.++ .+   .+|++|.
T Consensus        66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~G-----------r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~  133 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPVG-----------RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR  133 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS------------EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCC-CcEEEeecCC-----------CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence            455677777788899999995 5555555432           223222210  113332  34444 32   4699997


Q ss_pred             CCCCCcceEEEeec-------CCCeEEEEe--cC-CC-CEEEEEeCCCcEEEEEcc---CC----eEEeeeeCCCCCCeE
Q 014154          244 TSAQRRPVMSFDFR-------ETPIKAVAE--EP-DS-FNIYIGNGSGDLASVDIR---TG----KLLGCFIGKCSGSIR  305 (430)
Q Consensus       244 ~~~~~~~~~~~~~~-------~~~i~~~~~--sp-~~-~~l~~~~~d~~i~iwd~~---~~----~~~~~~~~~~~~~v~  305 (430)
                      +......+..+...       ...++.+++  +| +| -++++...+|.+..|-+.   .+    +.+++|..  ...+.
T Consensus       134 id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~E  211 (381)
T PF02333_consen  134 IDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPE  211 (381)
T ss_dssp             EETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EE
T ss_pred             ecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcce
Confidence            76322223333221       124667776  33 34 366677888988888764   33    45777876  45889


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCC-----CceeeEEEeec-cccceEEeeec--ccccc-c--cccCCCCceEecCC
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKT-----RQLLSAVFLKQ-HLNEVVFDSAF--ADKEV-A--NAAADAPMLEIQNG  374 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~-~~~~~v~~~~~--s~~g~-~--~~~~~d~~i~~~~~  374 (430)
                      .+.......+|+.+-+|--|.-|+.+.     ++.+..  ..+ +...-+-.++.  .+++. +  ++.-.+++..||+.
T Consensus       212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~--~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVAS--ADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEE--BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeec--ccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence            999988888999998887777777652     222222  222 22333445544  33443 3  55556778999987


Q ss_pred             CCC
Q 014154          375 NDT  377 (430)
Q Consensus       375 ~~~  377 (430)
                      ...
T Consensus       290 ~~~  292 (381)
T PF02333_consen  290 EGP  292 (381)
T ss_dssp             STT
T ss_pred             CCC
Confidence            653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.59  E-value=7.1  Score=34.66  Aligned_cols=115  Identities=13%  Similarity=0.056  Sum_probs=58.4

Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE-CCC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD-IKT  332 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd-~~~  332 (430)
                      .....+.+..+..+++|++++++.....+.-||--...-...-+.. ...|..+.|.|++.+.+.+ ..|.|+.=+ ...
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~-~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~  217 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS-SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD  217 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--S-SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred             ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCc-cceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence            3344567888989999999998876666667775432111111222 5789999999998766654 788888776 222


Q ss_pred             CceeeEEEeeccc-cceEEeeeccccccccccCCCCceE
Q 014154          333 RQLLSAVFLKQHL-NEVVFDSAFADKEVANAAADAPMLE  370 (430)
Q Consensus       333 ~~~~~~~~~~~~~-~~~v~~~~~s~~g~~~~~~~d~~i~  370 (430)
                      ......-..+... .-.+.+++|.+++...+++..|.+.
T Consensus       218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~  256 (302)
T PF14870_consen  218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL  256 (302)
T ss_dssp             EEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred             ccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence            2221110011111 2237899999998883344444443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.54  E-value=7.9  Score=35.03  Aligned_cols=160  Identities=14%  Similarity=0.109  Sum_probs=90.2

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCc------EEEEECCCCC---cceE-----EEeecCC--------CeEEEEecCCCC
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQ------VRLYDTSAQR---RPVM-----SFDFRET--------PIKAVAEEPDSF  271 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~------i~iwd~~~~~---~~~~-----~~~~~~~--------~i~~~~~sp~~~  271 (430)
                      ..+..+.+  .+++..+++.+.+|.      +..+++....   ..+.     .+....+        ..-+|++.+++.
T Consensus        20 GGlSgl~~--~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   20 GGLSGLDY--DPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             CcEeeEEE--eCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            44677888  545555666677777      6655554310   0011     1111111        334788877887


Q ss_pred             EEEEEeCC------CcEEEEEccCCeEEeeee--C------------CCCCCeEEEEecCCCCeEEEEeC-----CC--c
Q 014154          272 NIYIGNGS------GDLASVDIRTGKLLGCFI--G------------KCSGSIRSIARHPTLPIIASCGL-----DS--Y  324 (430)
Q Consensus       272 ~l~~~~~d------~~i~iwd~~~~~~~~~~~--~------------~~~~~v~~i~~~~~~~~l~s~~~-----dg--~  324 (430)
                      ++++.=.+      ..|+.++.. |+.+..+.  .            .......+++++|+|+.|+++.+     |+  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            77776666      788889876 66544441  1            12457889999999997766642     22  1


Q ss_pred             -------EEEE--ECCC-CceeeEEEeecc------ccceEEeeecccccccccc------CCCCceEecCCCC
Q 014154          325 -------LRFW--DIKT-RQLLSAVFLKQH------LNEVVFDSAFADKEVANAA------ADAPMLEIQNGND  376 (430)
Q Consensus       325 -------i~iw--d~~~-~~~~~~~~~~~~------~~~~v~~~~~s~~g~~~~~------~~d~~i~~~~~~~  376 (430)
                             ++|+  |..+ ++....+.+.-.      ....+..+.+-+++++++-      .....+++|..+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l  250 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDL  250 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEEc
Confidence                   4554  4444 333333322222      2345678888888876221      1345666665553

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.52  E-value=7.1  Score=34.52  Aligned_cols=170  Identities=12%  Similarity=0.070  Sum_probs=87.5

Q ss_pred             eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC---CEEE-EEeCCCcEEEEECCCCCcceEEEeec---
Q 014154          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFV-AGTNDHQVRLYDTSAQRRPVMSFDFR---  257 (430)
Q Consensus       185 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~---  257 (430)
                      .|.+||+.+.+.++.+.-+.....   ..+.+..+.+...+..   .++. +=+..+-|.++|+.+++. .+.+..+   
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~---~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s-~Rv~~~~~~~  110 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAP---PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKS-WRVLHNSFSP  110 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS----TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEE-EEEETCGCTT
T ss_pred             EEEEEECCCCcEEEEEECChHHcc---cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcE-EEEecCCcce
Confidence            577889988888777655432211   2356778877432221   2333 333445799999998652 2222111   


Q ss_pred             ----------------CCCeEEEEecC---CCCEEEEEeCCCcEEEEEccC-----Ce---------EEeeeeCCCCCCe
Q 014154          258 ----------------ETPIKAVAEEP---DSFNIYIGNGSGDLASVDIRT-----GK---------LLGCFIGKCSGSI  304 (430)
Q Consensus       258 ----------------~~~i~~~~~sp---~~~~l~~~~~d~~i~iwd~~~-----~~---------~~~~~~~~~~~~v  304 (430)
                                      ...+..++.+|   ++++|+-....+. ++|.+.+     ..         .+..+ +......
T Consensus       111 ~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s  188 (287)
T PF03022_consen  111 DPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS  188 (287)
T ss_dssp             S-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred             eccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence                            12366666655   6666766654432 3333221     11         11111 2112356


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEECCCCc---eeeEEEeeccccceEEeeeccc--cccc
Q 014154          305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQ---LLSAVFLKQHLNEVVFDSAFAD--KEVA  360 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~s~--~g~~  360 (430)
                      ..++++++|.++++--..+.|..|+..+.-   ....+......-....++++.+  +|.+
T Consensus       189 ~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L  249 (287)
T PF03022_consen  189 DGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYL  249 (287)
T ss_dssp             CEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-E
T ss_pred             ceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceE
Confidence            678899999888888899999999987521   2222211111122346677776  5554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PHA03098 kelch-like protein; Provisional

Probab=92.31  E-value=3.5  Score=40.33  Aligned_cols=144  Identities=15%  Similarity=0.093  Sum_probs=70.1

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC------CcEEE
Q 014154          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRL  241 (430)
Q Consensus       173 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~i  241 (430)
                      ++...+.|+.+     ..+..||..+.+-  ........      +..-.+++.   -++.+.+.|+.+      ..+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~lp~------~r~~~~~~~---~~~~iYv~GG~~~~~~~~~~v~~  410 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKW--REEPPLIF------PRYNPCVVN---VNNLIYVIGGISKNDELLKTVEC  410 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCce--eeCCCcCc------CCccceEEE---ECCEEEEECCcCCCCcccceEEE
Confidence            56666777765     3467777765432  21111000      011112222   256777777632      35788


Q ss_pred             EECCCCCcceEEEe---ecCCCeEEEEecCCCCEEEEEeCC--------CcEEEEEccCCeEEee--eeCCCCCCeEEEE
Q 014154          242 YDTSAQRRPVMSFD---FRETPIKAVAEEPDSFNIYIGNGS--------GDLASVDIRTGKLLGC--FIGKCSGSIRSIA  308 (430)
Q Consensus       242 wd~~~~~~~~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d--------~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~  308 (430)
                      ||+.+..  .....   ...... +++ ..++..++.|+.+        ..+.+||..+.+-...  +... ......+.
T Consensus       411 yd~~t~~--W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~  485 (534)
T PHA03098        411 FSLNTNK--WSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI  485 (534)
T ss_pred             EeCCCCe--eeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE
Confidence            9987632  11111   111111 222 2355566666543        2388899887654321  1111 11112222


Q ss_pred             ecCCCCeEEEEeCC-----CcEEEEECCCCc
Q 014154          309 RHPTLPIIASCGLD-----SYLRFWDIKTRQ  334 (430)
Q Consensus       309 ~~~~~~~l~s~~~d-----g~i~iwd~~~~~  334 (430)
                      +  ++.+++.||.+     +.|.+||..+.+
T Consensus       486 ~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        486 F--NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             E--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            3  66677777654     467888877654

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.27  E-value=3.7  Score=38.43  Aligned_cols=142  Identities=14%  Similarity=0.126  Sum_probs=86.2

Q ss_pred             CCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-------CEEEEEeCCCcEEEEECC
Q 014154          174 EKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-------RKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       174 ~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~l~s~~~dg~i~iwd~~  245 (430)
                      ..+|+ .|.....++-.|++.|+.+.+...+..          + -+.|  .|..       ..-++|-.+..|.-.|.+
T Consensus       479 ssli~~dg~~~~kLykmDIErGkvveeW~~~dd----------v-vVqy--~p~~kf~qmt~eqtlvGlS~~svFrIDPR  545 (776)
T COG5167         479 SSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD----------V-VVQY--NPYFKFQQMTDEQTLVGLSDYSVFRIDPR  545 (776)
T ss_pred             cceEEecCCCcccceeeecccceeeeEeecCCc----------c-eeec--CCchhHHhcCccceEEeecccceEEeccc
Confidence            34443 355556788888888888877766542          2 3344  3321       223445566677777777


Q ss_pred             CCCcceEEEeec----CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154          246 AQRRPVMSFDFR----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       246 ~~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                      -....+......    .....|..- ....++++++..|-|++||--.-+....+++. ...|..|..+.+|.++++.+.
T Consensus       546 ~~gNKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~l-G~aIk~idvta~Gk~ilaTCk  623 (776)
T COG5167         546 ARGNKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGL-GDAIKHIDVTANGKHILATCK  623 (776)
T ss_pred             ccCCceeeeeehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCccc-ccceeeeEeecCCcEEEEeec
Confidence            533222222211    112223322 23459999999999999996444444445555 678999999999998776654


Q ss_pred             CCcEEEEECC
Q 014154          322 DSYLRFWDIK  331 (430)
Q Consensus       322 dg~i~iwd~~  331 (430)
                       ..+.+-|+.
T Consensus       624 -~yllL~d~~  632 (776)
T COG5167         624 -NYLLLTDVP  632 (776)
T ss_pred             -ceEEEEecc
Confidence             456677764

>PHA02790 Kelch-like protein; Provisional

Probab=92.01  E-value=12  Score=36.00  Aligned_cols=145  Identities=9%  Similarity=-0.039  Sum_probs=69.6

Q ss_pred             CCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC--CcEEEEECC
Q 014154          173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--HQVRLYDTS  245 (430)
Q Consensus       173 ~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~  245 (430)
                      ++..+++|+.++     .+..||..+..-..........       .....+..    ++.+.+.|+.+  ..+..||..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r-------~~~~~v~~----~~~iYviGG~~~~~sve~ydp~  339 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR-------LYASGVPA----NNKLYVVGGLPNPTSVERWFHG  339 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh-------hcceEEEE----CCEEEEECCcCCCCceEEEECC
Confidence            345556676542     4677887765432211111100       11222233    67777777754  357788876


Q ss_pred             CCCcceEEEeecCCCe-EEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEee--eeCCCCCCeEEEEecCCCCeEEEE
Q 014154          246 AQRRPVMSFDFRETPI-KAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       246 ~~~~~~~~~~~~~~~i-~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      +..  ...+..-..+. ......-+++..+.|+.+   ..+..||.++.+-...  +... ......+.  -++.+.+.|
T Consensus       340 ~n~--W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~~~~~~--~~~~IYv~G  414 (480)
T PHA02790        340 DAA--WVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYKSCALV--FGRRLFLVG  414 (480)
T ss_pred             CCe--EEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-cccceEEE--ECCEEEEEC
Confidence            532  11111111111 111112356677777754   3477899877654321  1111 11112222  356666666


Q ss_pred             eCCCcEEEEECCCCcee
Q 014154          320 GLDSYLRFWDIKTRQLL  336 (430)
Q Consensus       320 ~~dg~i~iwd~~~~~~~  336 (430)
                      +   .+.+||..+.+-.
T Consensus       415 G---~~e~ydp~~~~W~  428 (480)
T PHA02790        415 R---NAEFYCESSNTWT  428 (480)
T ss_pred             C---ceEEecCCCCcEe
Confidence            4   4778888765543

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.79  E-value=4.5  Score=30.62  Aligned_cols=110  Identities=14%  Similarity=0.146  Sum_probs=69.9

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCC-------cceEEEeecCCCeEEEEecC-----CCCEEEEEeCCCcEEEEEccCCe
Q 014154          224 IDDHRKFVAGTNDHQVRLYDTSAQR-------RPVMSFDFRETPIKAVAEEP-----DSFNIYIGNGSGDLASVDIRTGK  291 (430)
Q Consensus       224 ~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~i~~~~~sp-----~~~~l~~~~~d~~i~iwd~~~~~  291 (430)
                      ......|++++.-|.|.|++.....       ..+..+.. ...|++|+-.+     +...|+.|+ ...|..||+....
T Consensus         7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~   84 (136)
T PF14781_consen    7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS   84 (136)
T ss_pred             CCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence            4455688889999999999876422       23444443 35788876543     235677775 5569999998776


Q ss_pred             EEeeeeCCCCCCeEEEEecC----CCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154          292 LLGCFIGKCSGSIRSIARHP----TLPIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       292 ~~~~~~~~~~~~v~~i~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      -+..-..  ...|+++.+-.    ..+ |+..+.+..|.-||....+...+
T Consensus        85 d~Fyke~--~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   85 DLFYKEV--PDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             hhhhhhC--ccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEE
Confidence            5433332  45677777632    233 44444577788888765555554

>PRK13684 Ycf48-like protein; Provisional

Probab=91.78  E-value=9.9  Score=34.53  Aligned_cols=151  Identities=14%  Similarity=0.061  Sum_probs=80.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ..+..+.+.|++.+++++ ..|.+..- .+.+...+......       ....++++.+  .+++..++++ ..|.+.+=
T Consensus       173 g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~-------~~~~l~~i~~--~~~g~~~~vg-~~G~~~~~  240 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRN-------SSRRLQSMGF--QPDGNLWMLA-RGGQIRFN  240 (334)
T ss_pred             ceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCC-------CcccceeeeE--cCCCCEEEEe-cCCEEEEc
Confidence            467888888887666554 44554432 22222222211111       1145788888  6777766654 56766532


Q ss_pred             ECCCCCcceEEEee----cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC--CCCCCeEEEEecCCCCeE
Q 014154          243 DTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG--KCSGSIRSIARHPTLPII  316 (430)
Q Consensus       243 d~~~~~~~~~~~~~----~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l  316 (430)
                      ....+.. ......    ....+.++.+.|++..+++| .+|.|. .....++--.....  ......+.+.|..++..+
T Consensus       241 s~d~G~s-W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~  317 (334)
T PRK13684        241 DPDDLES-WSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGF  317 (334)
T ss_pred             cCCCCCc-cccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceE
Confidence            2333221 111111    12357889999887765554 667554 34444443222221  113357788887666655


Q ss_pred             EEEeCCCcEEEEE
Q 014154          317 ASCGLDSYLRFWD  329 (430)
Q Consensus       317 ~s~~~dg~i~iwd  329 (430)
                      + .+..|.|.-|+
T Consensus       318 ~-~G~~G~il~~~  329 (334)
T PRK13684        318 V-LGQRGVLLRYV  329 (334)
T ss_pred             E-ECCCceEEEec
Confidence            5 45778887765

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.58  E-value=0.024  Score=51.77  Aligned_cols=140  Identities=13%  Similarity=0.081  Sum_probs=91.8

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCC
Q 014154          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~  246 (430)
                      ..|-+.+.-++.++.+..+..||-. ++.+......          .....++|  ..++. .++.+-..+.+.+||+.+
T Consensus        40 ~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~t----------g~aldm~w--DkegdvlavlAek~~piylwd~n~  106 (615)
T KOG2247|consen   40 HRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPT----------GKALDMAW--DKEGDVLAVLAEKTGPIYLWDVNS  106 (615)
T ss_pred             eeEecCCCceehhhhhhHHHhhhhh-cceecccCCc----------hhHhhhhh--ccccchhhhhhhcCCCeeechhhh
Confidence            4556666668888888888888853 3333332221          33445566  44554 445566788999999987


Q ss_pred             CCcceEEEeec-CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCc
Q 014154          247 QRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY  324 (430)
Q Consensus       247 ~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~  324 (430)
                      ...  ..+... ...-.-+.|++....++.+...+.+.||+-.+.+.+...-.| ..++++++|.+.+. .+.++.|..
T Consensus       107 eyt--qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh-~RRgtq~av~lEd~-vil~dcd~~  181 (615)
T KOG2247|consen  107 EYT--QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH-QRRGTQIAVTLEDY-VILCDCDNT  181 (615)
T ss_pred             hhH--HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhccc-ccceeEEEecccce-eeecCcHHH
Confidence            432  222221 112222678999999999999999999998887776555445 88999999998774 455555543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.33  E-value=1.5  Score=25.27  Aligned_cols=40  Identities=28%  Similarity=0.442  Sum_probs=28.6

Q ss_pred             CCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154          268 PDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       268 p~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  309 (430)
                      |++++|+++. .++.|.++|..+++.+..+...  .....+.|
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg--~~P~~i~~   41 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG--GYPFGVAV   41 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC--CCCceEEe
Confidence            5777777665 5789999999999888877753  23345554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.28  E-value=12  Score=34.54  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=88.0

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      +..++++..+|.|..+|.+++..++......       ....+..-.+  ..+|. |+.++.++.++.+|..++.. +-.
T Consensus        68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-------~~~~~~~~~~--~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~  136 (370)
T COG1520          68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLG-------AVAQLSGPIL--GSDGK-IYVGSWDGKLYALDASTGTL-VWS  136 (370)
T ss_pred             CCeEEEecCCCcEEEEeCCCCcEEecccCcC-------cceeccCceE--EeCCe-EEEecccceEEEEECCCCcE-EEE
Confidence            3455556888899999999998877654432       0012223333  22454 77788899899999977664 444


Q ss_pred             EeecC-CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC--CCCeEEEEecCCCCeEEEEeC--CCcEEEE
Q 014154          254 FDFRE-TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--SGSIRSIARHPTLPIIASCGL--DSYLRFW  328 (430)
Q Consensus       254 ~~~~~-~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~--dg~i~iw  328 (430)
                      ..... ..+..-..-.++ .++.++.++.+...|..+++....+....  ...+..-... ....++.+..  ++.+.-.
T Consensus       137 ~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~  214 (370)
T COG1520         137 RNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYAL  214 (370)
T ss_pred             EecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEE
Confidence            44443 111111222233 45555578999999999898877755420  1111111111 2234445544  5667777


Q ss_pred             ECCCCceeeE
Q 014154          329 DIKTRQLLSA  338 (430)
Q Consensus       329 d~~~~~~~~~  338 (430)
                      |..+|.....
T Consensus       215 ~~~~G~~~w~  224 (370)
T COG1520         215 NAEDGTLKWS  224 (370)
T ss_pred             EccCCcEeee
Confidence            8888877766

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.13  E-value=5.4  Score=30.23  Aligned_cols=110  Identities=14%  Similarity=0.125  Sum_probs=68.7

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCeeeE
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-----SEKFSLFGGKGVEVNVWDLDKCEKIW  198 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~  198 (430)
                      ..|+.++..|.+.|.+...........+..++..++.  ..|++++-.+     ....|+.|+.. .|..||+.....++
T Consensus        11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin--~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~F   87 (136)
T PF14781_consen   11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN--QEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLF   87 (136)
T ss_pred             eeEEEEecCCEEEEECCCccccccccccCceeEEECC--CceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhh
Confidence            4777888889999998766555444467788888874  7788876544     35677777766 89999998765544


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEee-cCCCCEEEEEeCCCcEEEEECCC
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~  246 (430)
                      --..+          +-|+++.+-. .....-++..+.+..|.-||...
T Consensus        88 yke~~----------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   88 YKEVP----------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             hhhCc----------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            32222          4466665521 11122334444455666666654

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.10  E-value=12  Score=39.53  Aligned_cols=164  Identities=9%  Similarity=0.037  Sum_probs=88.3

Q ss_pred             eecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCC
Q 014154           71 ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (430)
Q Consensus        71 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  150 (430)
                      .+.|+.+.+|+++++.....+.+.        ...|..+.+..+...-=.+.-..++....--.+.++.+.+... +...
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~--------shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~-~~~~  165 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGL--------SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEF-TGEL  165 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccch--------hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccc-cCcc
Confidence            357899999999987767666652        2366666666554410000112344444455677777766543 1111


Q ss_pred             CcceEEeeecC-CCceEEEEEcCCCCEEEEEeCCCeEEE--EECCCC---eeeEeeCC---------CCCCCCCCcCCcc
Q 014154          151 CSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGVEVNV--WDLDKC---EKIWTAKP---------PPKNSLGIFTPTW  215 (430)
Q Consensus       151 ~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~--~d~~~~---~~~~~~~~---------~~~~~~~~~~~~~  215 (430)
                      .-....+.+.. +-.|.|+....+|+.++ ++.||.|+-  |....+   +....+..         +........+.++
T Consensus       166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dp  244 (1311)
T KOG1900|consen  166 SIFNTSFKISVDGVSVNCITYTENGRIFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDP  244 (1311)
T ss_pred             cccccceeeecCCceEEEEEeccCCcEEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCc
Confidence            11111233333 56788888666777666 455555442  222221   10000000         0000000112357


Q ss_pred             eeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  246 (430)
                      |..++.  ...-..+.+-+..|+|.+||+..
T Consensus       245 I~qi~I--D~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  245 IRQITI--DNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeEe--ccccceeeeeccCceEEEEEccC
Confidence            888888  55566788888999999999986

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.06  E-value=9.4  Score=32.91  Aligned_cols=120  Identities=16%  Similarity=0.060  Sum_probs=76.0

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCC--cEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG  290 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  290 (430)
                      .....+.|  ..++.++-+.+.-|  .|+.+|+.+++. ....... ..---.++...+ +.....=.++...+||..+.
T Consensus        45 aFTQGL~~--~~~g~LyESTG~yG~S~l~~~d~~tg~~-~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl  120 (264)
T PF05096_consen   45 AFTQGLEF--LDDGTLYESTGLYGQSSLRKVDLETGKV-LQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTL  120 (264)
T ss_dssp             -EEEEEEE--EETTEEEEEECSTTEEEEEEEETTTSSE-EEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTT
T ss_pred             ccCccEEe--cCCCEEEEeCCCCCcEEEEEEECCCCcE-EEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccc
Confidence            45667777  45778888888776  699999999763 3333322 122234444433 33333446789999999999


Q ss_pred             eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154          291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       291 ~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  341 (430)
                      +.+.++.-.  ..=+.++.  ++..|+.......|+++|..+.+....+..
T Consensus       121 ~~~~~~~y~--~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  121 KKIGTFPYP--GEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             EEEEEEE-S--SS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred             eEEEEEecC--CcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEE
Confidence            998888753  44577774  666777776677899999998887776543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.03  E-value=8  Score=32.05  Aligned_cols=140  Identities=17%  Similarity=0.205  Sum_probs=77.7

Q ss_pred             CEEEEEeCCCeEEEEECC--CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC------cEEEE---E
Q 014154          175 KFSLFGGKGVEVNVWDLD--KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVRLY---D  243 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~iw---d  243 (430)
                      +.|+.+...+.|.+|++.  ..+....+...          +.|..+.+  +..|++|++--.+.      .+|+|   .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv----------~~V~~l~y--~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV----------GRVLQLVY--SEAGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch----------hheeEEEe--ccccceEEEEEeecCCccceEEEEEEEhh
Confidence            555555777789999997  34445555443          66889999  78899999854322      45654   2


Q ss_pred             CC-CCCcceE-EEeec---------------------CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-Ee-----
Q 014154          244 TS-AQRRPVM-SFDFR---------------------ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LG-----  294 (430)
Q Consensus       244 ~~-~~~~~~~-~~~~~---------------------~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~-----  294 (430)
                      .. ....++. .+-+|                     ..++.+++..|-..-|++|+ ++.+.+|.+..... ..     
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l  175 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL  175 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence            22 1112222 22221                     23566777777655666664 56788998764433 11     


Q ss_pred             eee----CCC-CCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          295 CFI----GKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       295 ~~~----~~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      .|.    .|+ .-.+..+++  -+.|+|..+ +-.++++.+
T Consensus       176 DFe~~l~~~~~~~~p~~v~i--c~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  176 DFERSLIDHIDNFKPTQVAI--CEGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             echhhhhheecCceEEEEEE--EeeEEEEec-CCEEEEEEE
Confidence            111    111 122444555  345676665 445666654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.84  E-value=3.2  Score=37.64  Aligned_cols=106  Identities=18%  Similarity=0.142  Sum_probs=56.9

Q ss_pred             CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE---Eeee---eCCCCCCeEEEEecCC---CCeEE-EEeCC-------
Q 014154          260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL---LGCF---IGKCSGSIRSIARHPT---LPIIA-SCGLD-------  322 (430)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~---~~~~---~~~~~~~v~~i~~~~~---~~~l~-s~~~d-------  322 (430)
                      ..++|+|.|++++++ +...|.|++++ ..+..   +..+   ..........++++|+   ..+|. +.+..       
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            357899999987766 45699999999 44443   2222   1122567899999995   23333 33311       


Q ss_pred             -CcEEEEECCCC-------ceeeEEEeec--cccceEEeeeccccccc-cccCCCCc
Q 014154          323 -SYLRFWDIKTR-------QLLSAVFLKQ--HLNEVVFDSAFADKEVA-NAAADAPM  368 (430)
Q Consensus       323 -g~i~iwd~~~~-------~~~~~~~~~~--~~~~~v~~~~~s~~g~~-~~~~~d~~  368 (430)
                       ..|.-|.+..+       +.+... +..  ........++|.|||.+ ++.++.+.
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~-~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTG-LPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEE-EES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred             ceeeEEEeccCCccccccceEEEEE-eCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence             23444444333       111111 121  12233467999999988 66665554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.33  E-value=1.8  Score=42.46  Aligned_cols=71  Identities=13%  Similarity=0.090  Sum_probs=44.5

Q ss_pred             CCCEEEEEeCCCcEEEEECCC---CCcceEEE--ee--------------------cCCCeEEEEecC----CCCEEEEE
Q 014154          226 DHRKFVAGTNDHQVRLYDTSA---QRRPVMSF--DF--------------------RETPIKAVAEEP----DSFNIYIG  276 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~--~~--------------------~~~~i~~~~~sp----~~~~l~~~  276 (430)
                      +...++.+..||.+.......   ........  ..                    ....+..+++++    +..+|++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            566788888999888877664   11111111  00                    012345566666    67899999


Q ss_pred             eCCCcEEEEEccCCeEEeee
Q 014154          277 NGSGDLASVDIRTGKLLGCF  296 (430)
Q Consensus       277 ~~d~~i~iwd~~~~~~~~~~  296 (430)
                      +.|+.+|+||+.+++++...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=89.48  E-value=2.6  Score=41.36  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=28.8

Q ss_pred             CeEEEEecC----CCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154          303 SIRSIARHP----TLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       303 ~v~~i~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      .+..+++++    +..+|++.+.|+.+|+||+.+++++...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            455566666    6689999999999999999999997664

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PHA02790 Kelch-like protein; Provisional

Probab=89.38  E-value=15  Score=35.37  Aligned_cols=141  Identities=10%  Similarity=0.018  Sum_probs=67.6

Q ss_pred             CCCEEEEEeCC--CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---cEEEEECCCC
Q 014154          173 SEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQ  247 (430)
Q Consensus       173 ~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~  247 (430)
                      ++...+.|+.+  ..+..||..+.+-  .....-...     ......+.+    ++.+.+.|+.++   .+..||..+.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W--~~~~~l~~~-----r~~~~~~~~----~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAW--VNMPSLLKP-----RCNPAVASI----NNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeE--EECCCCCCC-----CcccEEEEE----CCEEEEecCcCCCCccEEEEeCCCC
Confidence            55666667653  3577787654422  211111000     011222333    677778877654   4678888763


Q ss_pred             CcceEEEee---cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE--eeeeCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154          248 RRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (430)
Q Consensus       248 ~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~d  322 (430)
                      .  ......   ..... +++ .-+++..+.|   |.+.+||..+.+-.  ..+... ......+.+  ++++.+.||.+
T Consensus       387 ~--W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~-r~~~~~~v~--~~~IYviGG~~  456 (480)
T PHA02790        387 Q--WQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWTLIDDPIYP-RDNPELIIV--DNKLLLIGGFY  456 (480)
T ss_pred             E--EEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcEeEcCCCCCC-ccccEEEEE--CCEEEEECCcC
Confidence            2  111111   11111 221 2345555555   35778998776543  222211 222223333  67777888754


Q ss_pred             -----CcEEEEECCCCc
Q 014154          323 -----SYLRFWDIKTRQ  334 (430)
Q Consensus       323 -----g~i~iwd~~~~~  334 (430)
                           ..+..||..+.+
T Consensus       457 ~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        457 RGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CCcccceEEEEECCCCe
Confidence                 245566655443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.28  E-value=15  Score=32.37  Aligned_cols=55  Identities=11%  Similarity=-0.026  Sum_probs=39.2

Q ss_pred             eEEEEEcC------CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154          165 IAFSKVDI------SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (430)
Q Consensus       165 i~~~~~~~------~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (430)
                      -+.|+..|      .+.+|+---.||+|..||..+++.+-.+.......+.+   .-+..++|-
T Consensus       246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i---~GLWgL~fG  306 (336)
T TIGR03118       246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKV---DGLWSLTFG  306 (336)
T ss_pred             CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEe---cCeEEeeeC
Confidence            45566655      56777766679999999999998887777665554443   456777774

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.08  E-value=15  Score=32.11  Aligned_cols=268  Identities=12%  Similarity=0.021  Sum_probs=0.0

Q ss_pred             CCC-----cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc
Q 014154           12 CPP-----LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD   86 (430)
Q Consensus        12 ~~~-----~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~   86 (430)
                      |+|     +++++++.+|.-.--...-      ..+..|.   ..+.++...-.-.    ++..|-.--.+-+|+.....
T Consensus         9 c~p~~avflv~It~s~~gva~d~~v~~------~~vghfg---~~vsavdv~~~ya----~v~qG~~l~i~ditn~~~~t   75 (370)
T COG5276           9 CIPEYAVFLVLITGSDDGVAVDVHVGY------AYVGHFG---KGVSAVDVRGAYA----YVGQGFILAILDITNVSLQT   75 (370)
T ss_pred             CchhheeeEEEEeccccceeeccccce------EEeeecc---CCccccccccccc----ccccCceEeeccccCccccc


Q ss_pred             ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (430)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~  166 (430)
                      -...+..+....      -+..+.+..          .....+..+.-++|.++.....       +..+=.....+.-.
T Consensus        76 ~~~l~~~i~~~~------l~~Dv~vse----------~yvyvad~ssGL~IvDIS~P~s-------P~~~~~lnt~gyay  132 (370)
T COG5276          76 HDVLLSVINARD------LFADVRVSE----------EYVYVADWSSGLRIVDISTPDS-------PTLIGFLNTDGYAY  132 (370)
T ss_pred             CcceEEEEehhh------hhheeEecc----------cEEEEEcCCCceEEEeccCCCC-------cceeccccCCceEE


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCC---CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDK---CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      ++..+  |++.+++..+.-+.++|+.+   ......+....         ..-..++.    .|++...+..|+-+.+-|
T Consensus       133 gv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~---------~d~~~v~I----SGn~AYvA~~d~GL~ivD  197 (370)
T COG5276         133 GVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPG---------GDTHDVAI----SGNYAYVAWRDGGLTIVD  197 (370)
T ss_pred             EEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCC---------CCceeEEE----ecCeEEEEEeCCCeEEEE


Q ss_pred             CCCCCcceEEEeecCC-CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEE-EecCCCCeEEEEeC
Q 014154          244 TSAQRRPVMSFDFRET-PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPTLPIIASCGL  321 (430)
Q Consensus       244 ~~~~~~~~~~~~~~~~-~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i-~~~~~~~~l~s~~~  321 (430)
                      +.....|+..-.-..+ .+.++..+++  +.+..-.+--+.+-|....+....+-......+.++ .+.-.+++...+..
T Consensus       198 VSnp~sPvli~~~n~g~g~~sv~vsdn--r~y~vvy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadg  275 (370)
T COG5276         198 VSNPHSPVLIGSYNTGPGTYSVSVSDN--RAYLVVYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADG  275 (370)
T ss_pred             ccCCCCCeEEEEEecCCceEEEEecCC--eeEEEEcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeecc


Q ss_pred             CCcEEEEECCC
Q 014154          322 DSYLRFWDIKT  332 (430)
Q Consensus       322 dg~i~iwd~~~  332 (430)
                      +.-+-+-|+.+
T Consensus       276 a~gl~~idisn  286 (370)
T COG5276         276 AKGLPIIDISN  286 (370)
T ss_pred             ccCceeEeccC

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.86  E-value=12  Score=30.84  Aligned_cols=172  Identities=16%  Similarity=0.113  Sum_probs=94.5

Q ss_pred             CCCEEEEEeC--CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCc
Q 014154          173 SEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRR  249 (430)
Q Consensus       173 ~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~  249 (430)
                      ++.++.+.+.  ...|++||+.+++.+++........++    ..++       .-+. +-+..=.+|.-..+|.++.+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~Fg----EGit-------~~gd~~y~LTw~egvaf~~d~~t~~~  123 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFG----EGIT-------KLGDYFYQLTWKEGVAFKYDADTLEE  123 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccc----ccee-------eccceEEEEEeccceeEEEChHHhhh
Confidence            3455555443  346999999999988775543211111    1111       1122 222234577778888887543


Q ss_pred             ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEee----eeCCCCCCeEEEEecCCCCeEEEEeCCCcE
Q 014154          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC----FIGKCSGSIRSIARHPTLPIIASCGLDSYL  325 (430)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i  325 (430)
                       +..+.. ++.-..++  .|+..|+.+....+++.-|.++.....+    +.+..-..++-+.| -+|...|-.=.+..|
T Consensus       124 -lg~~~y-~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I  198 (262)
T COG3823         124 -LGRFSY-EGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRI  198 (262)
T ss_pred             -hccccc-CCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecce
Confidence             333332 23334554  3565677776667777777765443332    33322223344555 256555555555567


Q ss_pred             EEEECCCCceeeEEEeec---------cccceEEeeeccccccc
Q 014154          326 RFWDIKTRQLLSAVFLKQ---------HLNEVVFDSAFADKEVA  360 (430)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~---------~~~~~v~~~~~s~~g~~  360 (430)
                      ...|..+|+.+..+.+.+         ....+.+.+++.|++..
T Consensus       199 ~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r  242 (262)
T COG3823         199 ARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR  242 (262)
T ss_pred             EEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCe
Confidence            777788888777654332         12345678888887743

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.71  E-value=11  Score=34.99  Aligned_cols=102  Identities=10%  Similarity=0.058  Sum_probs=66.2

Q ss_pred             CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc---ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEE
Q 014154          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD  286 (430)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd  286 (430)
                      +...+.|.++.|  ++|.+.|++--.+.+|.+++....+.   .....+..+..|....|+.+ .-++..+..| +.+|-
T Consensus        63 m~d~G~I~SIkF--SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~  138 (657)
T KOG2377|consen   63 MDDKGEIKSIKF--SLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQ  138 (657)
T ss_pred             ecCCCceeEEEe--ccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEE
Confidence            334478999999  89999999999999999999854221   11222333456889999865 4555555555 56665


Q ss_pred             ccCC-eEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154          287 IRTG-KLLGCFIGKCSGSIRSIARHPTLPII  316 (430)
Q Consensus       287 ~~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l  316 (430)
                      .... +.++..+.+ ...|.-..|.++-+.+
T Consensus       139 v~pekrslRlVks~-~~nvnWy~yc~et~v~  168 (657)
T KOG2377|consen  139 VLPEKRSLRLVKSH-NLNVNWYMYCPETAVI  168 (657)
T ss_pred             Echhhhhhhhhhhc-ccCccEEEEccccceE
Confidence            4322 223344444 6667777777776543

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.68  E-value=19  Score=34.13  Aligned_cols=107  Identities=11%  Similarity=0.068  Sum_probs=60.0

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc-ceEEE----e-ecCCCeEEEEecCCC------CEEEEEe----
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSF----D-FRETPIKAVAEEPDS------FNIYIGN----  277 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~----~-~~~~~i~~~~~sp~~------~~l~~~~----  277 (430)
                      .....++|  .|++++|++--..|.|++++..+... .+..+    . ........|+++|+-      .+|++..    
T Consensus        30 ~~Pw~maf--lPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        30 NKPWALLW--GPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCceEEEE--cCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            34678899  78888777654469999998665322 11111    1 125678899999874      3455442    


Q ss_pred             ------CCCcEEEEEccCC-------eEE-eeeeCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154          278 ------GSGDLASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (430)
Q Consensus       278 ------~d~~i~iwd~~~~-------~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~d  322 (430)
                            ....|.-|.+...       +.+ ..+.......-..|.|.|||.++++.+..
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                  1233444544311       111 11211001123567899999876666543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.63  E-value=18  Score=34.18  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=37.5

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE--Eeeee----CCCCCCeEEEEecCCC
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL--LGCFI----GKCSGSIRSIARHPTL  313 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~----~~~~~~v~~i~~~~~~  313 (430)
                      ...+.|+|.||+++|++--..|.|++++..++..  +..+.    .........|+|+|+-
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            4568899999998777654469999998655432  22111    1115678999999885

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.57  E-value=20  Score=33.08  Aligned_cols=155  Identities=13%  Similarity=0.116  Sum_probs=86.1

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  252 (430)
                      +|+ |++++.++.++.+|..+++.++...... .      .........    ....+..++.++.+.-.|..++.. .-
T Consensus       111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~------~~~~~~~v~----~~~~v~~~s~~g~~~al~~~tG~~-~W  177 (370)
T COG1520         111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-S------PYYASPPVV----GDGTVYVGTDDGHLYALNADTGTL-KW  177 (370)
T ss_pred             CCe-EEEecccceEEEEECCCCcEEEEEecCC-C------eEEecCcEE----cCcEEEEecCCCeEEEEEccCCcE-EE
Confidence            454 7778999999999999999998877653 0      011111122    223344444678888777776653 22


Q ss_pred             EEeecC---CCeEEEEecCCCCEEEEEeC--CCcEEEEEccCCeEEeeeeCCCCCCeEE---EEecCC-----CCeEEEE
Q 014154          253 SFDFRE---TPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGKCSGSIRS---IARHPT-----LPIIASC  319 (430)
Q Consensus       253 ~~~~~~---~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~---i~~~~~-----~~~l~s~  319 (430)
                      ......   ..+..--.. ....++.+..  ++.+.-.|..+|........++...-..   ......     +.-+..+
T Consensus       178 ~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~  256 (370)
T COG1520         178 TYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAG  256 (370)
T ss_pred             EEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEE
Confidence            221111   111110011 2235555555  6677788888888876643221111110   111111     1224566


Q ss_pred             eCCCcEEEEECCCCceeeEEEe
Q 014154          320 GLDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       320 ~~dg~i~iwd~~~~~~~~~~~~  341 (430)
                      +.++.+...|..+++.+..+..
T Consensus       257 ~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         257 SYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             ecCCeEEEEEcCCCceEEEEec
Confidence            7788899999999999988643

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=88.52  E-value=30  Score=35.05  Aligned_cols=91  Identities=15%  Similarity=0.144  Sum_probs=56.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCC----------Cee---eEeeCCCCCCCCCCcCCcceeEEEEeec-CCCC
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDK----------CEK---IWTAKPPPKNSLGIFTPTWFTSAAFLSI-DDHR  228 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~----------~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~  228 (430)
                      -.|..+.++|+|.+|+..|..|. .|..+..          +..   .+.+.. ....+.......|..+.|+|. .++.
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEe-chhhccCCCCceEEEEEEcCCCCCCC
Confidence            46888999999999999888754 4444421          111   011110 000111122356889999532 2357


Q ss_pred             EEEEEeCCCcEEEEECCCCCcceEEEe
Q 014154          229 KFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (430)
Q Consensus       229 ~l~s~~~dg~i~iwd~~~~~~~~~~~~  255 (430)
                      .|++-+.|+++++||+.....+...+.
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~~p~~v~~  189 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQHPWQVLS  189 (717)
T ss_pred             eEEEEecCCEEEEEecCCCCCCeEEEE
Confidence            888889999999999987666655554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=88.38  E-value=2.7  Score=24.15  Aligned_cols=31  Identities=10%  Similarity=0.121  Sum_probs=23.9

Q ss_pred             CCCCeEEEEe-CCCcEEEEECCCCceeeEEEe
Q 014154          311 PTLPIIASCG-LDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       311 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~  341 (430)
                      |++++|+++. .++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5677666554 578999999999988888654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.37  E-value=19  Score=32.57  Aligned_cols=151  Identities=15%  Similarity=0.116  Sum_probs=85.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCe------EEEEECCC--C--eee-----EeeCCCCCCCCCCcCCcceeEEEEeecCCC
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVE------VNVWDLDK--C--EKI-----WTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~------i~~~d~~~--~--~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  227 (430)
                      +.+..+.+.+++..+++.+.+|.      ++.+++..  +  ..+     ..+.......+.. .....-++++  .+++
T Consensus        20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~-~~~D~Egi~~--~~~g   96 (326)
T PF13449_consen   20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPK-NGLDPEGIAV--PPDG   96 (326)
T ss_pred             CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCc-CCCChhHeEE--ecCC
Confidence            55678888876666777777777      66665543  1  011     1111111111100 0013456777  6788


Q ss_pred             CEEEEEeCC------CcEEEEECCCCCcceEEEe---------------ecCCCeEEEEecCCCCEEEEEeCCC------
Q 014154          228 RKFVAGTND------HQVRLYDTSAQRRPVMSFD---------------FRETPIKAVAEEPDSFNIYIGNGSG------  280 (430)
Q Consensus       228 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~---------------~~~~~i~~~~~sp~~~~l~~~~~d~------  280 (430)
                      .++++.-.+      ..|..++.. +.. ...+.               ..+...-+|+++|+|+.|+++.+..      
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~-~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRV-IRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP  174 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-Ccc-cceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence            888877667      788888876 332 22221               1235678999999999777765332      


Q ss_pred             -c-------EEE--EEccC-CeE----EeeeeCC----CCCCeEEEEecCCCCeEEE
Q 014154          281 -D-------LAS--VDIRT-GKL----LGCFIGK----CSGSIRSIARHPTLPIIAS  318 (430)
Q Consensus       281 -~-------i~i--wd~~~-~~~----~~~~~~~----~~~~v~~i~~~~~~~~l~s  318 (430)
                       .       +++  ||..+ ++.    .+.+...    ....|..+.+-+++++|+.
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence             1       444  55544 322    2233210    1467889999999987654

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=88.32  E-value=22  Score=33.16  Aligned_cols=108  Identities=14%  Similarity=0.031  Sum_probs=62.0

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc----ceEEEee--cCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR----PVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~  287 (430)
                      ..+..+.|  .+++..++++ ..|.+..- ...+..    .......  ....+..+.|.+++..+++| ..|.+.... 
T Consensus       281 ~~l~~v~~--~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-  354 (398)
T PLN00033        281 RRIQNMGW--RADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-  354 (398)
T ss_pred             cceeeeeE--cCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-
Confidence            55788888  6777777654 56665432 222221    1222221  12358899999887665555 677666543 


Q ss_pred             cCCeEEeeee--CCCCCCeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154          288 RTGKLLGCFI--GKCSGSIRSIARHPTLPIIASCGLDSYLRFW  328 (430)
Q Consensus       288 ~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iw  328 (430)
                      ..|+.-....  .......+.+.|.++++.+++| .+|.|.-|
T Consensus       355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~  396 (398)
T PLN00033        355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY  396 (398)
T ss_pred             CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence            3444322222  1114568899998777655554 67876554

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.81  E-value=21  Score=33.84  Aligned_cols=79  Identities=8%  Similarity=-0.069  Sum_probs=50.8

Q ss_pred             eeEEEEeecCCCCEEEEEeCCCcEEEEECC---------CCCcce--EEE-------e-ecCCCeEEEEecCCC---CEE
Q 014154          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTS---------AQRRPV--MSF-------D-FRETPIKAVAEEPDS---FNI  273 (430)
Q Consensus       216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---------~~~~~~--~~~-------~-~~~~~i~~~~~sp~~---~~l  273 (430)
                      |..+..  ++.|..++..+.+|.+.++=.+         .++..+  +++       . ...-.+..++|+|+.   ..|
T Consensus       106 V~~vl~--s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  106 VYQVLL--SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEe--cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            455555  8889999988889877665322         121100  111       1 011245678999976   677


Q ss_pred             EEEeCCCcEEEEEccCCeEEeee
Q 014154          274 YIGNGSGDLASVDIRTGKLLGCF  296 (430)
Q Consensus       274 ~~~~~d~~i~iwd~~~~~~~~~~  296 (430)
                      ..-+.|+.||+||+...+.++..
T Consensus       184 ~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             EEEecCcEEEEEecCCcchhhcc
Confidence            77889999999999876655443

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.32  E-value=28  Score=36.96  Aligned_cols=141  Identities=9%  Similarity=0.156  Sum_probs=78.3

Q ss_pred             EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee------cCCCCEEEEEeCCCcEEEEECC----CCCc
Q 014154          180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS------IDDHRKFVAGTNDHQVRLYDTS----AQRR  249 (430)
Q Consensus       180 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~l~s~~~dg~i~iwd~~----~~~~  249 (430)
                      .+-|+.+.+|+.+++.....+.+..         ..|..+...-      -|.=++++.-+.--.|.++-+.    ++..
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~s---------htIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~  165 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLS---------HTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL  165 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchh---------hhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence            4567889999999866555544432         1122222210      1111222222333344444322    1111


Q ss_pred             c----eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc----cCC---e-E----------------EeeeeCCCC
Q 014154          250 P----VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI----RTG---K-L----------------LGCFIGKCS  301 (430)
Q Consensus       250 ~----~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~----~~~---~-~----------------~~~~~~~~~  301 (430)
                      .    ...+......|.|+....+|+.+++| .||  .+|.+    ..+   + +                +..+.+.+.
T Consensus       166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~  242 (1311)
T KOG1900|consen  166 SIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK  242 (1311)
T ss_pred             cccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence            0    11222234678899988888877776 555  34433    111   1 0                112232236


Q ss_pred             CCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      .+|..+.....-..+.+-+..|+|.+||+..
T Consensus       243 dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  243 DPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CcceeeEeccccceeeeeccCceEEEEEccC
Confidence            7899999988888899999999999999975

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.66  E-value=0.51  Score=46.84  Aligned_cols=73  Identities=12%  Similarity=0.030  Sum_probs=46.8

Q ss_pred             cccCCCC-CCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeee-------ecCCCCCceeEEeecCCe
Q 014154            5 TTLECPG-CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAAS-------IDDSQNDPLLAVARKNGL   76 (430)
Q Consensus         5 ~~~~~~~-~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~p~g~~l~~g~~dg~   76 (430)
                      ..+.||- |....+-++..+|.|++-++...      ...-+.+|...+.-.++-       -.-+|||..+|.+..||.
T Consensus       185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~  258 (1283)
T KOG1916|consen  185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRA------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS  258 (1283)
T ss_pred             eeeecccccccceeeeccCCCceeEeeechH------HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence            3445553 33455666788899999888773      334455565543222110       013789999999999999


Q ss_pred             EEEecCC
Q 014154           77 TDILNPL   83 (430)
Q Consensus        77 i~iwd~~   83 (430)
                      ++.|.+.
T Consensus       259 v~f~Qiy  265 (1283)
T KOG1916|consen  259 VGFYQIY  265 (1283)
T ss_pred             cceeeee
Confidence            9999764

>smart00564 PQQ beta-propeller repeat

Probab=86.55  E-value=2.1  Score=23.07  Aligned_cols=27  Identities=19%  Similarity=0.286  Sum_probs=22.5

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~  200 (430)
                      +..+++++.+|.+..+|.++|+.+++.
T Consensus         6 ~~~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        6 DGTVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             CCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence            336788899999999999999888764

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=86.21  E-value=33  Score=33.01  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=63.0

Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154          258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (430)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  336 (430)
                      ...|+.+++..++ .+..|+..+-+-.|+..+ +..+....+...++|..+.=.|+++ |..|+.+|.++. +.+.++..
T Consensus       375 g~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~  451 (671)
T COG3292         375 GMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVL  451 (671)
T ss_pred             ccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchh
Confidence            3567777776644 556666664466677666 4445455554467888888889888 778888885543 44444444


Q ss_pred             eEEEeecc--ccceEEeeeccccccc
Q 014154          337 SAVFLKQH--LNEVVFDSAFADKEVA  360 (430)
Q Consensus       337 ~~~~~~~~--~~~~v~~~~~s~~g~~  360 (430)
                      ..+.+..+  ....+..+.+.|+|++
T Consensus       452 n~ln~~~~~l~~s~~~~lg~~~~g~L  477 (671)
T COG3292         452 NLLNPGSHGLDGSRVEQLGLGPDGRL  477 (671)
T ss_pred             cccccccCcCCcchhhhhccCCCCce
Confidence            43322222  2344678889999998

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=85.81  E-value=9.9  Score=26.63  Aligned_cols=42  Identities=19%  Similarity=0.132  Sum_probs=29.6

Q ss_pred             EeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       276 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      +..+|.+..||..+++..-.+.+  -.-.+.|++++|+.+|+.+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~--L~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDG--LYFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEE--ESSEEEEEE-TTSSEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhC--CCccCeEEEcCCCCEEEEE
Confidence            34568899999999887555555  3467899999999987766

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=85.77  E-value=54  Score=35.10  Aligned_cols=75  Identities=21%  Similarity=0.402  Sum_probs=45.2

Q ss_pred             CcccCCCCCCC----cc-----eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC
Q 014154            4 TTTLECPGCPP----LR-----ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN   74 (430)
Q Consensus         4 ~~~~~~~~~~~----~~-----l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d   74 (430)
                      ...++||.|..    .+     .++...||.+.|=|..-        +.+........+++.+...+....-|||..--|
T Consensus       347 qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNy--------IRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvd  418 (1899)
T KOG4659|consen  347 QRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNY--------IRRISQDGQVSTILTLGLTDTSHSYYIAVSPVD  418 (1899)
T ss_pred             cccccCCCCCCccccceeeceeeEEEcCCCcEEEccchh--------eeeecCCCceEEEEEecCCCccceeEEEecCcC
Confidence            34578999974    22     34567899998877654        222222233344555554323233467777889


Q ss_pred             CeEEEecCCCCc
Q 014154           75 GLTDILNPLNGD   86 (430)
Q Consensus        75 g~i~iwd~~~~~   86 (430)
                      |++.|=|..+.+
T Consensus       419 gtlyvSdp~s~q  430 (1899)
T KOG4659|consen  419 GTLYVSDPLSKQ  430 (1899)
T ss_pred             ceEEecCCCcce
Confidence            999888875444

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.76  E-value=4.9  Score=37.03  Aligned_cols=156  Identities=8%  Similarity=0.039  Sum_probs=91.4

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe-ecCC----CeE-EEEecCCCCEEEEEeCCCcEEEE-E
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-FRET----PIK-AVAEEPDSFNIYIGNGSGDLASV-D  286 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~----~i~-~~~~sp~~~~l~~~~~d~~i~iw-d  286 (430)
                      ..+..+-.  .|+++.+..-+. ..+.++++.+.....+.+- ...+    .|+ ++..-..|.-+++++.||.|.-| |
T Consensus       221 ~~v~qllL--~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         221 SDVSQLLL--TPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             cchHhhEE--CCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeee
Confidence            44555666  899998877554 6888998875321111111 1111    122 12222356678888999998876 6


Q ss_pred             ccCCe-----EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccccc
Q 014154          287 IRTGK-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAN  361 (430)
Q Consensus       287 ~~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~  361 (430)
                      .+.+.     .++.++-. ..++..+.-..+.+-+++-...|++.++.....+.+-.   ..- -.....+++||++.++
T Consensus       298 vr~~~~p~l~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~---~~~-~~~~~~~~~Sp~~~~L  372 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLA-PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF---ERA-YQAPQLVAMSPNQAYL  372 (733)
T ss_pred             eecCCCCcceeeeccccC-cccceeeccccccceEEEEcCCCceeeeecccCcceeh---hhh-hcCcceeeeCcccchh
Confidence            55332     12222222 23444443333445677778889998887655444432   111 1123668999999998


Q ss_pred             ccCCCCceEecCCCCC
Q 014154          362 AAADAPMLEIQNGNDT  377 (430)
Q Consensus       362 ~~~~d~~i~~~~~~~~  377 (430)
                      ..-+.|.++++..+..
T Consensus       373 l~e~~gki~~~~l~Nr  388 (733)
T COG4590         373 LSEDQGKIRLAQLENR  388 (733)
T ss_pred             eeecCCceEEEEecCC
Confidence            8888899999877653

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.16  E-value=37  Score=32.66  Aligned_cols=141  Identities=15%  Similarity=0.111  Sum_probs=71.4

Q ss_pred             CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC-
Q 014154          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP-  260 (430)
Q Consensus       182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-  260 (430)
                      ......++|. .|...+.+.....         ....+..  -++|.+++...  ..+..+|+.. + .+......... 
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~---------~~~~~~~--l~nG~ll~~~~--~~~~e~D~~G-~-v~~~~~l~~~~~  189 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSG---------SDNSFKQ--LPNGNLLIGSG--NRLYEIDLLG-K-VIWEYDLPGGYY  189 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT-----------SSEEE---TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE
T ss_pred             CCceEEEECC-CccEEEEEccCcc---------ccceeeE--cCCCCEEEecC--CceEEEcCCC-C-EEEeeecCCccc
Confidence            3445666665 3555555443221         1111333  57888776554  7888888874 3 23433332211 


Q ss_pred             --eEEEEecCCCCEEEEEeC-------------CCcEEEEEccCCeEEeeeeC--CC----C------------------
Q 014154          261 --IKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTGKLLGCFIG--KC----S------------------  301 (430)
Q Consensus       261 --i~~~~~sp~~~~l~~~~~-------------d~~i~iwd~~~~~~~~~~~~--~~----~------------------  301 (430)
                        -..+..-|+|++|+.+..             ...|..+| .+|+.+..+..  |.    .                  
T Consensus       190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~  268 (477)
T PF05935_consen  190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR  268 (477)
T ss_dssp             -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred             ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence              245667899999988872             12355666 67776655321  10    0                  


Q ss_pred             --CCeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154          302 --GSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       302 --~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                        -.++++.+.+ ++.+|+|+-.-..|...|.++++....+
T Consensus       269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence              2478999988 5555555544558999998899888763

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=85.14  E-value=37  Score=32.67  Aligned_cols=110  Identities=14%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             eeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe
Q 014154          216 FTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (430)
Q Consensus       216 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  294 (430)
                      |+.+.+  .. ...+-.++...-+..|+..+...+.....+ ..++|..+.=.|+++ |..|+.+|.++. +.+.++...
T Consensus       378 it~~~~--d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~-~pe~~~v~n  452 (671)
T COG3292         378 ITTTLE--DS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR-DPESGRVLN  452 (671)
T ss_pred             cchhhh--cc-CCcEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-Cccccchhc
Confidence            555556  33 345555666655566666652222222222 346788888888887 888988886654 445544443


Q ss_pred             eeeC--C--CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          295 CFIG--K--CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       295 ~~~~--~--~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      .+..  |  ..+.|..+.+-|+|++-+.. .+| |..|+.+.
T Consensus       453 ~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~-g~g-va~~~sq~  492 (671)
T COG3292         453 LLNPGSHGLDGSRVEQLGLGPDGRLWLAA-GSG-VAAWESQR  492 (671)
T ss_pred             ccccccCcCCcchhhhhccCCCCceEEEe-cce-eeeecccc
Confidence            3321  1  13457778888999753333 344 56676543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.67  E-value=0.065  Score=49.06  Aligned_cols=141  Identities=10%  Similarity=0.071  Sum_probs=94.2

Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEE-EEEeCCCcEEEEEccCCeEE-eeeeCCCC
Q 014154          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLL-GCFIGKCS  301 (430)
Q Consensus       224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~d~~i~iwd~~~~~~~-~~~~~~~~  301 (430)
                      .+.+.-++.++.+..+..||-.. +. ..... ..+....++|..++..+ +.+-..+.+.+||+.+.... ..+.+.  
T Consensus        43 ~~e~~nlavaca~tiv~~YD~ag-q~-~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~--  117 (615)
T KOG2247|consen   43 RPEGHNLAVACANTIVIYYDKAG-QV-ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGT--  117 (615)
T ss_pred             ecCCCceehhhhhhHHHhhhhhc-ce-ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCc--
Confidence            56666688888898999998764 21 22222 23455667777776544 44556788999999754321 122222  


Q ss_pred             CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEec
Q 014154          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ  372 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~  372 (430)
                      ..-.-+.|++....++.+-..|.+.|++..+.+.+..  ...|. ..+..+++.+.+..+..+.|..+.+-
T Consensus       118 ~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv--~Gkh~-RRgtq~av~lEd~vil~dcd~~L~v~  185 (615)
T KOG2247|consen  118 SSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIV--MGKHQ-RRGTQIAVTLEDYVILCDCDNTLSVT  185 (615)
T ss_pred             chHHHHhhccCCccccccccccceEEEeccchhhhhh--hcccc-cceeEEEecccceeeecCcHHHHHHh
Confidence            2223378999999999998999999999887776654  33353 34588999998887777777665443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=84.49  E-value=32  Score=33.10  Aligned_cols=132  Identities=11%  Similarity=0.076  Sum_probs=65.6

Q ss_pred             CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC---eEEEEecC
Q 014154          235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS---IRSIARHP  311 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---v~~i~~~~  311 (430)
                      ..+...++|... . .+..+.........+...++|.+++...  ..+..+|+ .|+.+..+... ...   =..+..-|
T Consensus       126 ~~~~~~~iD~~G-~-Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~-~~~~~~HHD~~~l~  199 (477)
T PF05935_consen  126 SSSYTYLIDNNG-D-VRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLP-GGYYDFHHDIDELP  199 (477)
T ss_dssp             BEEEEEEEETTS---EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE---TTEE-B-S-EEE-T
T ss_pred             CCceEEEECCCc-c-EEEEEccCccccceeeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecC-CcccccccccEECC
Confidence            345566666653 2 2333332211111156678888776554  78889998 57765555432 111   24567789


Q ss_pred             CCCeEEEEe--------------CCCcEEEEECCCCceeeEEEeecccc------------------------ceEEeee
Q 014154          312 TLPIIASCG--------------LDSYLRFWDIKTRQLLSAVFLKQHLN------------------------EVVFDSA  353 (430)
Q Consensus       312 ~~~~l~s~~--------------~dg~i~iwd~~~~~~~~~~~~~~~~~------------------------~~v~~~~  353 (430)
                      +|++|+.+.              .| .|..+| .+|+.+..+.+..|..                        .-+.++.
T Consensus       200 nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~  277 (477)
T PF05935_consen  200 NGNLLILASETKYVDEDKDVDTVED-VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSID  277 (477)
T ss_dssp             TS-EEEEEEETTEE-TS-EE---S--EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEE
T ss_pred             CCCEEEEEeecccccCCCCccEecC-EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccE
Confidence            999988777              23 366777 7888877765544431                        1156778


Q ss_pred             ccc-cccc-cccCCCCceEecCC
Q 014154          354 FAD-KEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       354 ~s~-~g~~-~~~~~d~~i~~~~~  374 (430)
                      +.+ ++.+ +++-.-..|...+.
T Consensus       278 yd~~dd~iivSsR~~s~V~~Id~  300 (477)
T PF05935_consen  278 YDPSDDSIIVSSRHQSAVIKIDY  300 (477)
T ss_dssp             EETTTTEEEEEETTT-EEEEEE-
T ss_pred             EeCCCCeEEEEcCcceEEEEEEC
Confidence            877 5555 44444446666663

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=84.39  E-value=53  Score=33.78  Aligned_cols=206  Identities=12%  Similarity=0.093  Sum_probs=0.0

Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc--CCCCEEEEEeCC---CeEEEEECCCC
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKG---VEVNVWDLDKC  194 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d---~~i~~~d~~~~  194 (430)
                      +....-+++....|.+.+|-..............++... .....|+..++.  .+|+.++.++.+   +.|++|.+.-.
T Consensus        59 ~~~K~A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~-~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~  137 (753)
T PF11635_consen   59 GPAKSACIAVTRNGLLKLWYQKPDGQWNESSTAELESLG-SSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQID  137 (753)
T ss_pred             CCCceEEEEEecCCeEEEEEEcCCCccceeehhhhcccc-ccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEe


Q ss_pred             ee-------------eEeeCCCCCCCCCCcCCc-----------ceeEEEEee----cCCCCEEEEEeC-----CCcEEE
Q 014154          195 EK-------------IWTAKPPPKNSLGIFTPT-----------WFTSAAFLS----IDDHRKFVAGTN-----DHQVRL  241 (430)
Q Consensus       195 ~~-------------~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~----~~~~~~l~s~~~-----dg~i~i  241 (430)
                      -.             +................+           .++.+.|.+    ......++.+..     ...|.-
T Consensus       138 W~~~~~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~R  217 (753)
T PF11635_consen  138 WNAKPQQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIER  217 (753)
T ss_pred             ccCcCccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEE


Q ss_pred             EECCCCCcceEEEeecC-------------------------CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee
Q 014154          242 YDTSAQRRPVMSFDFRE-------------------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (430)
Q Consensus       242 wd~~~~~~~~~~~~~~~-------------------------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  296 (430)
                      |.++....+++..-..-                         ..|.++....-+.+++....||+|.++|..+.+.+...
T Consensus       218 weL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~  297 (753)
T PF11635_consen  218 WELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET  297 (753)
T ss_pred             EEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc


Q ss_pred             ----eCC--------------CCCCeEEEEecCCCCeEEEEeCCCcEE
Q 014154          297 ----IGK--------------CSGSIRSIARHPTLPIIASCGLDSYLR  326 (430)
Q Consensus       297 ----~~~--------------~~~~v~~i~~~~~~~~l~s~~~dg~i~  326 (430)
                          ...              ....+..++|||++-.++.-..+|.+.
T Consensus       298 ~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~~~~~  345 (753)
T PF11635_consen  298 RTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDEDGKTK  345 (753)
T ss_pred             ccccCCccccccccccccccccCCCCceEEECcccceEEEEecCCCce

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.25  E-value=2.5  Score=23.97  Aligned_cols=28  Identities=11%  Similarity=0.134  Sum_probs=24.4

Q ss_pred             EEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154          176 FSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       176 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      .++.++.+|.|+..|.++|+.++.++..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            4667799999999999999999988764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.75  E-value=40  Score=31.96  Aligned_cols=139  Identities=19%  Similarity=0.181  Sum_probs=80.7

Q ss_pred             EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC--------CCEEEEEeCCCeEEEEECCC-CeeeE
Q 014154          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--------EKFSLFGGKGVEVNVWDLDK-CEKIW  198 (430)
Q Consensus       128 ~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--------~~~l~~~~~d~~i~~~d~~~-~~~~~  198 (430)
                      .+...+.+.-.++..+.        .|.-|++...  + -+.|.|.        .+.| +|-.+..|.-.|.+- |..+.
T Consensus       485 dg~~~~kLykmDIErGk--------vveeW~~~dd--v-vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         485 DGGERDKLYKMDIERGK--------VVEEWDLKDD--V-VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             cCCCcccceeeecccce--------eeeEeecCCc--c-eeecCCchhHHhcCccceE-EeecccceEEecccccCCcee
Confidence            33444455555555443        6778886533  3 5566663        2334 455555666566543 32222


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (430)
                      ......   +  .......+..-   ....+++.++..|.|++||--. ......+++-...|..|..+.+|.++++.+ 
T Consensus       553 v~esKd---Y--~tKn~Fss~~t---TesGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC-  622 (776)
T COG5167         553 VVESKD---Y--KTKNKFSSGMT---TESGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC-  622 (776)
T ss_pred             eeeehh---c--ccccccccccc---ccCceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee-
Confidence            211110   0  00011222222   2345899999999999999654 333456677778999999999999888765 


Q ss_pred             CCcEEEEEcc
Q 014154          279 SGDLASVDIR  288 (430)
Q Consensus       279 d~~i~iwd~~  288 (430)
                      ..+|.+-|++
T Consensus       623 k~yllL~d~~  632 (776)
T COG5167         623 KNYLLLTDVP  632 (776)
T ss_pred             cceEEEEecc
Confidence            4567777765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.54  E-value=51  Score=32.94  Aligned_cols=55  Identities=13%  Similarity=0.131  Sum_probs=40.3

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  313 (430)
                      +.+..+..||+.++|+.=..+|.|.+-+....+.+..+......+.-.++|.-+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence            5678889999999999999999999998887777777663212333355664443

>smart00564 PQQ beta-propeller repeat

Probab=83.39  E-value=3.2  Score=22.35  Aligned_cols=25  Identities=32%  Similarity=0.760  Sum_probs=21.3

Q ss_pred             EEEEEeCCCcEEEEEccCCeEEeee
Q 014154          272 NIYIGNGSGDLASVDIRTGKLLGCF  296 (430)
Q Consensus       272 ~l~~~~~d~~i~iwd~~~~~~~~~~  296 (430)
                      .+++++.++.+..+|.++|+.+.++
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            6788889999999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=83.37  E-value=29  Score=30.05  Aligned_cols=211  Identities=12%  Similarity=0.023  Sum_probs=125.0

Q ss_pred             CcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE
Q 014154          151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (430)
Q Consensus       151 ~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (430)
                      .|.+..+-+..+..-..+...|++..-++-+.. -|.-.|-++.+.. ++.....+     .........|  .+.|++-
T Consensus        92 tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt-~f~lp~~~-----a~~nlet~vf--D~~G~lW  162 (353)
T COG4257          92 TGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVT-RFPLPLEH-----ADANLETAVF--DPWGNLW  162 (353)
T ss_pred             CCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceE-Eeeccccc-----CCCcccceee--CCCccEE
Confidence            356777777777777888888888777654444 4555566554332 12111111     0144667778  8888888


Q ss_pred             EEEeCCCcEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC--CCCCeEEE
Q 014154          231 VAGTNDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--CSGSIRSI  307 (430)
Q Consensus       231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~i  307 (430)
                      +++. .|.---.|...  ..+..+... ...-+.|+..|+|..-++.-.++.|-..|..++.. .++...  ....-..+
T Consensus       163 Ft~q-~G~yGrLdPa~--~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRri  238 (353)
T COG4257         163 FTGQ-IGAYGRLDPAR--NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRI  238 (353)
T ss_pred             Eeec-cccceecCccc--CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCc-ceecCCCccccccccc
Confidence            8765 22222222222  224444432 23457788899999888888888888888877733 222211  02234556


Q ss_pred             EecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      --+|.++.-+|....+.+..||..+.. -..+.+.+. ...-.++.....|+. ++-.+-|.|.-||...
T Consensus       239 wsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs-~arpys~rVD~~grVW~sea~agai~rfdpet  306 (353)
T COG4257         239 WSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGS-KARPYSMRVDRHGRVWLSEADAGAIGRFDPET  306 (353)
T ss_pred             ccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCC-CCCcceeeeccCCcEEeeccccCceeecCccc
Confidence            667888888887788889999877544 333445554 222355555555555 5555556666665443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.96  E-value=58  Score=34.61  Aligned_cols=75  Identities=16%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      +..+..++.+..+...... +.+..-+.+-+|+.........+...      ...+++++..++++..||.+..||...+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~h~Dgs~~fWd~s~g  266 (993)
T KOG1983|consen  194 LSLIEYESLQVLYYSPTKI-LIGFNRGLVVIKDRASKYVQSAYLPN------GQLESRDGSHFVSYHTDGSYAFWDVSSG  266 (993)
T ss_pred             ccccccccceeeeecCCCc-ceeeeeeeeeehhcccccchhhcccc------cccCccCCceEEEEEecCCEEeeecCCC
Confidence            3344556666555433333 33445566677765444333333321      1112788999999999999999999887


Q ss_pred             ce
Q 014154          334 QL  335 (430)
Q Consensus       334 ~~  335 (430)
                      ..
T Consensus       267 ~~  268 (993)
T KOG1983|consen  267 KL  268 (993)
T ss_pred             ce
Confidence            55

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=82.62  E-value=31  Score=29.74  Aligned_cols=72  Identities=10%  Similarity=-0.030  Sum_probs=53.1

Q ss_pred             CCCeEEEEecC------CC-CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc-ccccccccCCCCceEec
Q 014154          301 SGSIRSIARHP------TL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQ  372 (430)
Q Consensus       301 ~~~v~~i~~~~------~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~~~~~~d~~i~~~  372 (430)
                      ...|+|++--.      +. ..|+.|.++|.|+|.|.+....+..+.+.+-...+...-.|. -|.++++++.||.|.+.
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            34677776432      11 479999999999999999888888876665544445555675 77788999999998864

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=82.45  E-value=37  Score=30.59  Aligned_cols=107  Identities=10%  Similarity=0.051  Sum_probs=53.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCcc--eEEEeecCCCe--EEEEecCCCCEEEEEeC-----CCcEEEEEccCCe
Q 014154          226 DHRKFVAGTND-----HQVRLYDTSAQRRP--VMSFDFRETPI--KAVAEEPDSFNIYIGNG-----SGDLASVDIRTGK  291 (430)
Q Consensus       226 ~~~~l~s~~~d-----g~i~iwd~~~~~~~--~~~~~~~~~~i--~~~~~sp~~~~l~~~~~-----d~~i~iwd~~~~~  291 (430)
                      ++.+++.|+.+     ..+..||+.+..-.  ...+..-..+.  .+++. -++++.+.|+.     ...+..||+.+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            45667777754     35667777653310  11111100111  12222 24556666664     2468889988765


Q ss_pred             EEe--eeeCCCCCCeEEEEecCCCCeEEEEeCCC----cEEEEECCCCce
Q 014154          292 LLG--CFIGKCSGSIRSIARHPTLPIIASCGLDS----YLRFWDIKTRQL  335 (430)
Q Consensus       292 ~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~dg----~i~iwd~~~~~~  335 (430)
                      -..  .+...  ......+...++.+.+.|+.++    .+.+||..+.+-
T Consensus       151 W~~~~~~p~~--~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       151 WFELPDFPGE--PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             eeECCCCCCC--CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            322  22211  1112222233667778887664    356888876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=82.21  E-value=4.2  Score=39.94  Aligned_cols=67  Identities=7%  Similarity=0.092  Sum_probs=46.3

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd  329 (430)
                      ..++++.-+|.++.++.++.||.|++|+....+.......  ..+-..+.|...|  |+++..|..+.-|.
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~--~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE--AKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh--cCCccceeeeccc--eEEEeccchhheee
Confidence            3567788889999999999999999999865444222221  2344566675554  56666777777775

>PF01011 PQQ: PQQ enzyme repeat family

Probab=81.05  E-value=4.5  Score=22.86  Aligned_cols=27  Identities=37%  Similarity=0.626  Sum_probs=23.6

Q ss_pred             EEEEEeCCCcEEEEEccCCeEEeeeeC
Q 014154          272 NIYIGNGSGDLASVDIRTGKLLGCFIG  298 (430)
Q Consensus       272 ~l~~~~~d~~i~iwd~~~~~~~~~~~~  298 (430)
                      .+++++.+|.|+-.|.++|+.+..+..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            466778999999999999999988875

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.99  E-value=22  Score=28.59  Aligned_cols=31  Identities=13%  Similarity=0.128  Sum_probs=25.1

Q ss_pred             CCeEEEEecCCC------CEEEEEeCCCcEEEEEccC
Q 014154          259 TPIKAVAEEPDS------FNIYIGNGSGDLASVDIRT  289 (430)
Q Consensus       259 ~~i~~~~~sp~~------~~l~~~~~d~~i~iwd~~~  289 (430)
                      ..+.+++|||.|      -+|++-+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999955      4678888999999997653

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=80.64  E-value=74  Score=32.85  Aligned_cols=169  Identities=13%  Similarity=0.115  Sum_probs=94.8

Q ss_pred             ceEEeeecCCCceEEEEEc---C----CCCEEEEEeCCCeEEEEECCCC---------------eeeEeeCCCCCCCCCC
Q 014154          153 TVKSWNVCASGTIAFSKVD---I----SEKFSLFGGKGVEVNVWDLDKC---------------EKIWTAKPPPKNSLGI  210 (430)
Q Consensus       153 ~i~~~~~~~~~~i~~~~~~---~----~~~~l~~~~~d~~i~~~d~~~~---------------~~~~~~~~~~~~~~~~  210 (430)
                      .-..|.+..+.+|..|+|.   .    ..++|++ -....+.|+...-.               .++..+.....     
T Consensus        70 ~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~t-----  143 (765)
T PF10214_consen   70 LSGAWSIDDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDT-----  143 (765)
T ss_pred             ccceeEcCCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhc-----
Confidence            3345776778999999998   2    2235554 44557777773211               11222221110     


Q ss_pred             cCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC----cceEEEeecCC----------CeEEEEecCCCCEEEEE
Q 014154          211 FTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR----RPVMSFDFRET----------PIKAVAEEPDSFNIYIG  276 (430)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~----------~i~~~~~sp~~~~l~~~  276 (430)
                       .......++|. +.+...||+....|...||++....    ........+.+          .-..|.|.++.+.|+++
T Consensus       144 -gg~~~aDv~Fn-P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~  221 (765)
T PF10214_consen  144 -GGFPHADVAFN-PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC  221 (765)
T ss_pred             -CCCccceEEec-cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE
Confidence             11345678884 2345589999999999999992111    11111111112          23367888888788877


Q ss_pred             eCCCcEEEEEccCCeEEe-eeeCCCCCCeEEEEecCC--CCeEEEEeCCCcEEEEECCC
Q 014154          277 NGSGDLASVDIRTGKLLG-CFIGKCSGSIRSIARHPT--LPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       277 ~~d~~i~iwd~~~~~~~~-~~~~~~~~~v~~i~~~~~--~~~l~s~~~dg~i~iwd~~~  332 (430)
                      + ...+.++|+.+..... .........|..+.-+|.  +..++-.  ...|...++..
T Consensus       222 ~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  222 N-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             c-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            5 4568899998776533 222212467888877776  2222222  23455555554

These proteins are found in fungi.

>PLN02193 nitrile-specifier protein

Probab=80.57  E-value=56  Score=31.40  Aligned_cols=106  Identities=16%  Similarity=0.192  Sum_probs=54.3

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCcceEEEeec----CCC-eEEEEecCCCCEEEEEeCC-----CcEEEEEccCC
Q 014154          226 DHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDFR----ETP-IKAVAEEPDSFNIYIGNGS-----GDLASVDIRTG  290 (430)
Q Consensus       226 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~----~~~-i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~  290 (430)
                      ++.+.+.|+.+     ..+..||+.+..  ...+...    ... -.+++. -++++++.|+.+     ..+..||+.+.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~--W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~  304 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNE--WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK  304 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCE--EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence            55666777654     358888988632  2222110    011 112222 245566666654     34678888776


Q ss_pred             eEEeeee-C---CCCCCeEEEEecCCCCeEEEEeCC----CcEEEEECCCCcee
Q 014154          291 KLLGCFI-G---KCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTRQLL  336 (430)
Q Consensus       291 ~~~~~~~-~---~~~~~v~~i~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~  336 (430)
                      +-...-. +   ........+.+  ++++++.++.+    ..+.+||+.+.+-.
T Consensus       305 ~W~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~  356 (470)
T PLN02193        305 KWFHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWT  356 (470)
T ss_pred             EEEeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEE
Confidence            5432110 0   00111122222  56777777755    45899999876543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=80.55  E-value=14  Score=29.73  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=26.2

Q ss_pred             CCeEEEEecCCC------CeEEEEeCCCcEEEEECCCC
Q 014154          302 GSIRSIARHPTL------PIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       302 ~~v~~i~~~~~~------~~l~s~~~dg~i~iwd~~~~  333 (430)
                      ..+..++|||.|      -+|++...++.|.||.....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~  123 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN  123 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence            478999999965      36888899999999987643

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PLN02153 epithiospecifier protein

Probab=80.42  E-value=46  Score=30.30  Aligned_cols=105  Identities=16%  Similarity=0.216  Sum_probs=52.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCcceEEEee------cCCC-eEEEEecCCCCEEEEEeCC-----------CcE
Q 014154          226 DHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDF------RETP-IKAVAEEPDSFNIYIGNGS-----------GDL  282 (430)
Q Consensus       226 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~------~~~~-i~~~~~sp~~~~l~~~~~d-----------~~i  282 (430)
                      ++.+++.|+.+     ..+.+||+.+..  -..+..      .... -.+++. -++++++.|+.+           ..|
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v  161 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNE--WTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTI  161 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCE--EEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceE
Confidence            56677777653     357788987632  122211      1111 112222 345666666643           247


Q ss_pred             EEEEccCCeEEeeeeCC-----CCCCeEEEEecCCCCeEEEEeCC-------------CcEEEEECCCCcee
Q 014154          283 ASVDIRTGKLLGCFIGK-----CSGSIRSIARHPTLPIIASCGLD-------------SYLRFWDIKTRQLL  336 (430)
Q Consensus       283 ~iwd~~~~~~~~~~~~~-----~~~~v~~i~~~~~~~~l~s~~~d-------------g~i~iwd~~~~~~~  336 (430)
                      .+||..+.+-.. +...     .......+.+  ++++++.++.+             ..|.+||+.+.+-.
T Consensus       162 ~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        162 EAYNIADGKWVQ-LPDPGENFEKRGGAGFAVV--QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             EEEECCCCeEee-CCCCCCCCCCCCcceEEEE--CCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence            788988765322 1110     0111122223  55666655432             35888998766543

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=80.16  E-value=41  Score=29.61  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=61.9

Q ss_pred             CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe------CCCcEEEEECCCCCcceEEEeec
Q 014154          184 VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT------NDHQVRLYDTSAQRRPVMSFDFR  257 (430)
Q Consensus       184 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~  257 (430)
                      ..|++||..+.+=......-         ...|+.+.|  ..+.++++.|.      ....+..||+.+..  ...+...
T Consensus        16 ~~lC~yd~~~~qW~~~g~~i---------~G~V~~l~~--~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~   82 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNGI---------SGTVTDLQW--ASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGG   82 (281)
T ss_pred             CEEEEEECCCCEeecCCCCc---------eEEEEEEEE--ecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCc
Confidence            46899998764432221111         267999999  44555666654      34568899998643  3344442


Q ss_pred             -----CCCeEEEEecC-CC-CEEEEEe-C--CCcEEEEEccCCeEEee-eeCCCCCCeEEEEec
Q 014154          258 -----ETPIKAVAEEP-DS-FNIYIGN-G--SGDLASVDIRTGKLLGC-FIGKCSGSIRSIARH  310 (430)
Q Consensus       258 -----~~~i~~~~~sp-~~-~~l~~~~-~--d~~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~  310 (430)
                           .++|..+.+.. |+ ++.+.|. .  +..|..||=.+...+.. .... ...|..+.+-
T Consensus        83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~-~t~I~~l~~~  145 (281)
T PF12768_consen   83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGS-GTTIRGLQVL  145 (281)
T ss_pred             ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCC-CCEEEEEEEE
Confidence                 36788887732 33 3444443 2  34467777555444433 2221 3445555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	430
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		5e-05

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 17/169 (10%)
Query: 170 VDISEKFSLFGGKGVEVNV--WDLDKCEKIWTAKPPPKNSLGI-FTPTWFTSAAFLSIDD 226
           VDIS    +     ++ ++  WDL+  ++I +    P ++  + F+P            D
Sbjct: 86  VDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP------------D 133
Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVD 286
            +    GT+  +V ++   + ++   S D R   I ++A  PD   +  G   G +   D
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL 335
           I TGKLL    G     IRS+   P   ++ +   D Y++ +D++   L
Sbjct: 193 IATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	430
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.89
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.87
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.77
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.72
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.69
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.64
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.63
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.63
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.61
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.6
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.59
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.59
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.57
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.55
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.53
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.51
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.49
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.48
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.48
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.48
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.47
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.47
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.46
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.44
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.44
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.42
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.42
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.41
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.41
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.4
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.38
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.35
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.35
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.31
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.31
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.3
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.28
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.27
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.25
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.24
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	99.24
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.23
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.22
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.22
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.22
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.2
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.19
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.18
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	99.17
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.16
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.15
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.14
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.13
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.09
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	99.08
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.05
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.03
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.0
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.99
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.99
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.98
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.97
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.95
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.93
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.92
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.76
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.75
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.75
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.74
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.69
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.65
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.61
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.61
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.59
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.58
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.44
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.43
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.42
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.33
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.3
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.25
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.25
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.24
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.2
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.19
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.14
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.13
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.11
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.09
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.08
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.04
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.02
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.01
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.99
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.9
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.9
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.88
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.84
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.77
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.75
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.72
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.65
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.64
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.58
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.58
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.53
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.52
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.38
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.37
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.37
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.34
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.32
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.32
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.27
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.24
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.23
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.18
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.04
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.03
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.02
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.76
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.58
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.5
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.41
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.33
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.32
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.24
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.21
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.19
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.11
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.1
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.08
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.07
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.79
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.6
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.56
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	95.55
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.44
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.42
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.34
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.28
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.28
3ott_A	758	Two-component system sensor histidine kinase; beta	95.16
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.03
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.97
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.88
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.84
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.47
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.4
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.13
3ott_A	758	Two-component system sensor histidine kinase; beta	93.88
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.72
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.54
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	92.42
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	91.26
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.23
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.58
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	89.9
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	88.98
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.56
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	87.33
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	83.69
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	82.74
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	82.55
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	81.98
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	81.29

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.5e-44  Score=323.15  Aligned_cols=295  Identities=14%  Similarity=0.239  Sum_probs=249.2

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc--eeeccCCCCCCCCCCceEEEEEeecCcc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQRE  117 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~  117 (430)
                      .+...+.+|.+.|..++++.+..+++.+|++|+.|++|+||++.+++...  .+.        ++...+.++.+.+..  
T Consensus        23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~--------gh~~~v~~~~~~~~~--   92 (321)
T 3ow8_A           23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE--------GHQLGVVSVDISHTL--   92 (321)
T ss_dssp             EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEEC--------CCSSCEEEEEECSSS--
T ss_pred             heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeec--------cCCCCEEEEEECCCC--
Confidence            44566788999988888877666678899999999999999987665322  233        345578877776543  


Q ss_pred             cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 014154          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI  197 (430)
Q Consensus       118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~  197 (430)
                            ..+++++.|+.+++|++....        .+..+. .+...+.+++|+|++++|++++.++.|++|++++++..
T Consensus        93 ------~~l~s~s~D~~i~lWd~~~~~--------~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~  157 (321)
T 3ow8_A           93 ------PIAASSSLDAHIRLWDLENGK--------QIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE  157 (321)
T ss_dssp             ------SEEEEEETTSEEEEEETTTTE--------EEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE
T ss_pred             ------CEEEEEeCCCcEEEEECCCCC--------EEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee
Confidence                  488999999999999975332        444444 45667889999999999999999999999999999888


Q ss_pred             EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                      ..+..+.         ..|.+++|  +|++++|++|+.|+.|++||+++++ ++..+.+|..+|.+++|+|++++|++|+
T Consensus       158 ~~~~~~~---------~~v~~~~~--spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s  225 (321)
T 3ow8_A          158 YSLDTRG---------KFILSIAY--SPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTAS  225 (321)
T ss_dssp             EEEECSS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEEC
T ss_pred             EEecCCC---------ceEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEc
Confidence            7776654         66999999  8999999999999999999999865 5888999999999999999999999999


Q ss_pred             CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154          278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       278 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      .|+.|++||+++++.+..+.+| ...|.+++|+|++.+|++++.|+.|+|||+.+++++..  +.+| ...|++++|+|+
T Consensus       226 ~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~h-~~~v~~v~~s~~  301 (321)
T 3ow8_A          226 DDGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT--FFDH-QDQVWGVKYNGN  301 (321)
T ss_dssp             TTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE--ECCC-SSCEEEEEECTT
T ss_pred             CCCeEEEEECCCcceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEE--EcCC-CCcEEEEEECCC
Confidence            9999999999999999999998 89999999999999999999999999999999999988  5567 455799999999


Q ss_pred             ccc-cccCCCCceEecCCC
Q 014154          358 EVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       358 g~~-~~~~~d~~i~~~~~~  375 (430)
                      +.+ ++++.|+.|++|+.+
T Consensus       302 g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          302 GSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SSEEEEEETTCCEEEEECC
T ss_pred             CCEEEEEeCCCeEEEEeCC
Confidence            988 999999999999965

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.7e-43  Score=346.59  Aligned_cols=340  Identities=12%  Similarity=0.123  Sum_probs=266.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .++++|+.|++|++||...+     ++...+.+|...|..+  .|  +|+|++||+|+.|++|+|||+.+++.+..+.. 
T Consensus       161 ~~l~s~s~D~~v~lwd~~~~-----~~~~~l~~H~~~V~~v--~f--spdg~~las~s~D~~i~lwd~~~g~~~~~~~~-  230 (611)
T 1nr0_A          161 FRIISGSDDNTVAIFEGPPF-----KFKSTFGEHTKFVHSV--RY--NPDGSLFASTGGDGTIVLYNGVDGTKTGVFED-  230 (611)
T ss_dssp             CEEEEEETTSCEEEEETTTB-----EEEEEECCCSSCEEEE--EE--CTTSSEEEEEETTSCEEEEETTTCCEEEECBC-
T ss_pred             eEEEEEeCCCeEEEEECCCC-----eEeeeeccccCceEEE--EE--CCCCCEEEEEECCCcEEEEECCCCcEeeeecc-
Confidence            36999999999999998876     7788899999985544  44  67889999999999999999998887766531 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc------------------------cccCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV------------------------SAESS  150 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~------------------------~~~~~  150 (430)
                      ......+|.+.+.++.+.+..        ..+++++.|+++++|++.....                        ++++.
T Consensus       231 ~~~~~~~h~~~V~~v~~spdg--------~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  302 (611)
T 1nr0_A          231 DSLKNVAHSGSVFGLTWSPDG--------TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA  302 (611)
T ss_dssp             TTSSSCSSSSCEEEEEECTTS--------SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred             ccccccccCCCEEEEEECCCC--------CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence            001112466788888876644        4899999999999999753211                        34556


Q ss_pred             CcceEEeee----------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC-CCCCCC------------
Q 014154          151 CSTVKSWNV----------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PPPKNS------------  207 (430)
Q Consensus       151 ~~~i~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~------------  207 (430)
                      ++.+++|+.          .|...|.+++|+|++++|++++.|++|++||+.++.....+. .|....            
T Consensus       303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~  382 (611)
T 1nr0_A          303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF  382 (611)
T ss_dssp             TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE
T ss_pred             CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEE
Confidence            788888874          356789999999999999999999999999998776543321 110000            


Q ss_pred             ------------------------------------------------------------CCCcCCcceeEEEEeecCCC
Q 014154          208 ------------------------------------------------------------LGIFTPTWFTSAAFLSIDDH  227 (430)
Q Consensus       208 ------------------------------------------------------------~~~~~~~~v~~~~~~~~~~~  227 (430)
                                                                                  ..+.+...+.+++|  +|++
T Consensus       383 s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~--spdg  460 (611)
T 1nr0_A          383 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL--SNDK  460 (611)
T ss_dssp             EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE--CTTS
T ss_pred             EEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE--eCCC
Confidence                                                                        00011234678899  8999


Q ss_pred             CEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC-CeEEee--eeCCCCCCe
Q 014154          228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGC--FIGKCSGSI  304 (430)
Q Consensus       228 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~--~~~~~~~~v  304 (430)
                      ++|++|+.|+.|++||+...........+|...|++++|+|++++|++++.|+.|++||+.+ ++++..  +.+| ...|
T Consensus       461 ~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H-~~~V  539 (611)
T 1nr0_A          461 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKV  539 (611)
T ss_dssp             CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCC-SSCE
T ss_pred             CEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeec-ccce
Confidence            99999999999999999864321122367999999999999999999999999999999987 666554  2336 8999


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      .+++|+|++++|++|+.|++|+|||+.++.......+.+|....|.+++|+|++++++++.|++|++|+.+
T Consensus       540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             eEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCCCEEEEecc
Confidence            99999999999999999999999999887633211156774456799999999999999999999999873

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.1e-43  Score=328.05  Aligned_cols=288  Identities=13%  Similarity=0.213  Sum_probs=250.8

Q ss_pred             eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccc
Q 014154           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS  121 (430)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  121 (430)
                      ...+.+|...|.++  .|  +|++++|++|+.||+|+|||+.+++....+.+|        .+.+.++.+.+..      
T Consensus       101 ~~~l~gh~~~V~~~--~~--~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h--------~~~V~~v~~~~~~------  162 (410)
T 1vyh_C          101 KYALSGHRSPVTRV--IF--HPVFSVMVSASEDATIKVWDYETGDFERTLKGH--------TDSVQDISFDHSG------  162 (410)
T ss_dssp             SCEEECCSSCEEEE--EE--CSSSSEEEEEESSSCEEEEETTTCCCCEEECCC--------SSCEEEEEECTTS------
T ss_pred             eEeecccCCcEEEE--EE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc--------CCcEEEEEEcCCC------
Confidence            34566788885554  44  778889999999999999999999988887654        4578888776543      


Q ss_pred             cCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC
Q 014154          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK  201 (430)
Q Consensus       122 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~  201 (430)
                        ..+++++.|+.+++|++....        .++.+. .|...|.+++|+|++++|++|+.|++|++||+.++..+..+.
T Consensus       163 --~~l~sgs~D~~i~iwd~~~~~--------~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~  231 (410)
T 1vyh_C          163 --KLLASCSADMTIKLWDFQGFE--------CIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT  231 (410)
T ss_dssp             --SEEEEEETTSCCCEEETTSSC--------EEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             --CEEEEEeCCCeEEEEeCCCCc--------eeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence              489999999999999975322        333333 577899999999999999999999999999999999988887


Q ss_pred             CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCC------------
Q 014154          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPD------------  269 (430)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~------------  269 (430)
                      .|.         .+|.++.|  +|++.+|++|+.|+.|++||+.++. ....+..|...|.+++|+|+            
T Consensus       232 ~h~---------~~v~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~  299 (410)
T 1vyh_C          232 GHR---------EWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGS  299 (410)
T ss_dssp             CCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSC
T ss_pred             CCC---------ccEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-eeeEecCCCceEEEEEEcCcccccchhhhccc
Confidence            765         77999999  8999999999999999999999865 47788899999999999996            


Q ss_pred             --------CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154          270 --------SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       270 --------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  341 (430)
                              +.+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++.+|++|+.|+.|++||+.+++++..  +
T Consensus       300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~--~  376 (410)
T 1vyh_C          300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT--L  376 (410)
T ss_dssp             C-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE--E
T ss_pred             cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEE--E
Confidence                    678999999999999999999999999998 89999999999999999999999999999999998887  5


Q ss_pred             eccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154          342 KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       342 ~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      .+| ...|++++|+|++.+ ++++.|+.|++|+.
T Consensus       377 ~~h-~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          377 NAH-EHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ECC-SSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cCC-CCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            677 556799999999998 99999999999985

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-41  Score=303.74  Aligned_cols=293  Identities=15%  Similarity=0.164  Sum_probs=242.1

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      ++..+|.+|...|..  +.|  +|+|++|++|+.||+|+|||+.++..+..+..+        ...+..+.+.+..    
T Consensus         4 ~~~~~~~~h~~~V~~--~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~--------~~~v~~~~~~~~~----   67 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKG--IDF--HPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT--------ETPVRAGKFIARK----   67 (304)
T ss_dssp             CCEEEEEEECSCEEE--EEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEEEEEEEGGG----
T ss_pred             eeEEeecCCCCceEE--EEE--CCCCCEEEEEcCCCcEEEEECCCCceeEEeecc--------CCcEEEEEEeCCC----
Confidence            355678889888554  445  778999999999999999999999888777653        3467777776654    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeE
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIW  198 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~  198 (430)
                          ..+++++.|+.+++|++....        .+..+. .|...|.+++|+|++++|++|+.|++|++||++++ ....
T Consensus        68 ----~~l~s~s~d~~i~vwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~  134 (304)
T 2ynn_A           68 ----NWIIVGSDDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ  134 (304)
T ss_dssp             ----TEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE
T ss_pred             ----CEEEEECCCCEEEEEECCCCc--------EEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh
Confidence                489999999999999976432        455554 67899999999999999999999999999999876 4445


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC--CCCEEEE
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP--DSFNIYI  275 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp--~~~~l~~  275 (430)
                      .+..|.         ..|.+++|  +| ++.+|++|+.|+.|++||++...........|...+..+.|+|  ++.+|++
T Consensus       135 ~~~~h~---------~~v~~v~~--~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  203 (304)
T 2ynn_A          135 TFEGHE---------HFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT  203 (304)
T ss_dssp             EECCCC---------SCEEEEEE--CTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE
T ss_pred             hhcccC---------CcEEEEEE--CCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE
Confidence            566654         77999999  77 6789999999999999999886654444456678899999986  7789999


Q ss_pred             EeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc
Q 014154          276 GNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA  355 (430)
Q Consensus       276 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s  355 (430)
                      |+.|+.|++||+++++++..+.+| ...|.+++|+|++++|++|+.||.|++||+.+++++..  +..+ ...+++++|+
T Consensus       204 ~s~D~~i~iWd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~--~~~~-~~~~~~~~~~  279 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT--LNVG-LERSWCIATH  279 (304)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE--ECCS-SSSEEEEEEC
T ss_pred             EcCCCeEEEEeCCCCccceeeCCC-CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeee--ccCC-CccEEEEEEC
Confidence            999999999999999999999998 89999999999999999999999999999999999988  5556 3457999999


Q ss_pred             cccc--ccccCCCCceEecCCCC
Q 014154          356 DKEV--ANAAADAPMLEIQNGND  376 (430)
Q Consensus       356 ~~g~--~~~~~~d~~i~~~~~~~  376 (430)
                      |++.  +++++.++.+.+|+...
T Consensus       280 ~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          280 PTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             TTCGGGCEEEEETTEEEEEECC-
T ss_pred             CCCCceEEEEecCCceEEEEecc
Confidence            9875  35556666677776543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.4e-41  Score=307.52  Aligned_cols=293  Identities=15%  Similarity=0.137  Sum_probs=246.6

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      +....+.+|...|..  +.|  +|++++|++|+.||+|+|||+.+++.+..+..+        ...+.++.+.+..    
T Consensus        46 ~~~~~l~gH~~~v~~--~~~--s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~--------~~~v~~~~~s~~~----  109 (340)
T 1got_B           46 RTRRTLRGHLAKIYA--MHW--GTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR--------SSWVMTCAYAPSG----  109 (340)
T ss_dssp             CEEEEECCCSSCEEE--EEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECS--------SSCEEEEEECTTS----
T ss_pred             hhheeecCCCCceEE--EEE--CCCCCEEEEEeCCCcEEEEECCCCCcceEeecC--------CccEEEEEECCCC----
Confidence            456778899998554  445  678899999999999999999998887776653        3467766665543    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                          ..+++++.++.+.+|++.....    .....+.+ ..|...|.++.|++++ .+++++.|++|++||+.+++.+..
T Consensus       110 ----~~l~s~~~d~~v~iw~~~~~~~----~~~~~~~~-~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~  179 (340)
T 1got_B          110 ----NYVACGGLDNICSIYNLKTREG----NVRVSREL-AGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             ----SEEEEEETTCEEEEEETTTCSB----SCEEEEEE-ECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ----CEEEEEeCCCeEEEEECccCCC----cceeEEEe-cCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEE
Confidence                4899999999999999753321    00112222 3678899999999876 488999999999999999999988


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (430)
                      +..|.         ..|.+++|  +|++.+|++|+.|+.|++||++++. ++..+.+|...|.+++|+|++++|++|+.|
T Consensus       180 ~~~h~---------~~v~~~~~--~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d  247 (340)
T 1got_B          180 FTGHT---------GDVMSLSL--APDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             ECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EcCCC---------CceEEEEE--CCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence            88765         67999999  8999999999999999999999865 578899999999999999999999999999


Q ss_pred             CcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154          280 GDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      +.|++||+++++.+..+..+ +...|.+++|+|++.+|++|+.|+.|++||+.+++.+..  +.+| ...|.+++|+|+|
T Consensus       248 ~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~--~~~h-~~~v~~~~~s~dg  324 (340)
T 1got_B          248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGH-DNRVSCLGVTDDG  324 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EECC-SSCEEEEEECTTS
T ss_pred             CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeE--eecC-CCcEEEEEEcCCC
Confidence            99999999999887776532 135799999999999999999999999999999998887  6688 5567999999999


Q ss_pred             cc-cccCCCCceEecC
Q 014154          359 VA-NAAADAPMLEIQN  373 (430)
Q Consensus       359 ~~-~~~~~d~~i~~~~  373 (430)
                      .+ ++++.|+.|++|+
T Consensus       325 ~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          325 MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEETTSCEEEEC
T ss_pred             CEEEEEcCCccEEecC
Confidence            98 9999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.5e-41  Score=308.84  Aligned_cols=298  Identities=12%  Similarity=0.113  Sum_probs=248.6

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      +....+.+|...|.++  .|  +|++++|++|+.||+|+|||..+++....+..+        ...+.++.+.+..    
T Consensus        55 ~~~~~l~gH~~~V~~~--~~--s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~--------~~~v~~~~~sp~g----  118 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCM--DW--CKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP--------CTWVMACAYAPSG----  118 (354)
T ss_dssp             CEEEEEECCSSCEEEE--EE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECS--------SSCCCEEEECTTS----
T ss_pred             EEEEEecCCCCeEEEE--EE--CCCCCEEEEEeCCCeEEEEECCCCCcceEEecC--------CCCEEEEEECCCC----
Confidence            4556788999995554  44  678899999999999999999888877666543        2356666665543    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                          ..+++++.++.+.+|.+.......  .......+. .|...|.+++|+|++..|++++.|++|++||+++++.+..
T Consensus       119 ----~~lasg~~d~~i~v~~~~~~~~~~--~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~  191 (354)
T 2pbi_B          119 ----CAIACGGLDNKCSVYPLTFDKNEN--MAAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQS  191 (354)
T ss_dssp             ----SEEEEESTTSEEEEEECCCCTTCC--SGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ----CEEEEeeCCCCEEEEEEecccccc--ccccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEE
Confidence                489999999999999987543210  011223333 5778999999999999999999999999999999999888


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (430)
                      +..|.         ..|.+++|.+++++.+|++|+.|+.|++||+++++ ++..+..|...|.+++|+|++.+|++|+.|
T Consensus       192 ~~~h~---------~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D  261 (354)
T 2pbi_B          192 FHGHG---------ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDAFASGSDD  261 (354)
T ss_dssp             EECCS---------SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EcCCC---------CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCCEEEEEeCC
Confidence            87765         67999999655578899999999999999999866 588899999999999999999999999999


Q ss_pred             CcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154          280 GDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      ++|++||+++++.+..+..+ +...+.+++|+|++.+|++|+.|+.|++||+.+++.+..  +.+| ...|++++|+|+|
T Consensus       262 ~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~--l~~h-~~~v~~l~~spdg  338 (354)
T 2pbi_B          262 ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSI--LFGH-ENRVSTLRVSPDG  338 (354)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEE--ECCC-SSCEEEEEECTTS
T ss_pred             CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEE--EECC-CCcEEEEEECCCC
Confidence            99999999999887776643 134789999999999999999999999999999998877  6678 5567999999999


Q ss_pred             cc-cccCCCCceEecC
Q 014154          359 VA-NAAADAPMLEIQN  373 (430)
Q Consensus       359 ~~-~~~~~d~~i~~~~  373 (430)
                      .+ ++++.|+.|++|+
T Consensus       339 ~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          339 TAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SCEEEEETTSEEEEEC
T ss_pred             CEEEEEcCCCCEEecC
Confidence            98 9999999999995

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.1e-41  Score=329.02  Aligned_cols=312  Identities=18%  Similarity=0.271  Sum_probs=263.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++++.||.|++|+...      +.+..+.+|...+..  +.+  +|++++|++++.|+.|++||. +++.+..+.+ 
T Consensus       234 ~~l~~~~~d~~i~~w~~~~------~~~~~~~~~~~~v~~--v~~--~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~-  301 (577)
T 2ymu_A          234 QTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVNG--VAF--RPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-  301 (577)
T ss_dssp             SCEEEEETTSCEEEECTTS------CEEEEECCCSSCEEE--EEE--CTTSSEEEEEETTSCEEEEET-TSCEEEEECC-
T ss_pred             CEEEEEeCCCEEEEEeCCC------CEEEEEecCCCCEEE--EEE--cCCCCEEEEEeCCCEEEEEeC-CCcEEEEEec-
Confidence            4688999999999999876      577788889888554  455  778899999999999999996 4565665554 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee------------------ecCc----cccCCCc
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE------------------VTKV----SAESSCS  152 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~------------------~~~~----~~~~~~~  152 (430)
                             +...+.++.+.+..        ..+++++.++.+++|++.                  +.++    +++..++
T Consensus       302 -------h~~~v~~~~~~~~~--------~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  366 (577)
T 2ymu_A          302 -------HSSSVWGVAFSPDG--------QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK  366 (577)
T ss_dssp             -------CSSCEEEEEECTTS--------SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -------CCCCeEEEEECCCC--------CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCC
Confidence                   34577777765543        478888999999998743                  2222    4566788


Q ss_pred             ceEEeeec---------CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee
Q 014154          153 TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (430)
Q Consensus       153 ~i~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (430)
                      .+++|+..         |...|.+++|+|++++|++++.|+.|++||. +++.+..+..+.         ..|.+++|  
T Consensus       367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~---------~~v~~~~~--  434 (577)
T 2ymu_A          367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVWGVAF--  434 (577)
T ss_dssp             EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCS---------SCEEEEEE--
T ss_pred             EEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCC---------CCeEEEEE--
Confidence            99999853         4577999999999999999999999999996 466666666654         67999999  


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC
Q 014154          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (430)
Q Consensus       224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  303 (430)
                      +|++.+|++++.|+.|++||... + .+..+.+|...|.+++|+|++++|++++.|+.|++||. +++++..+.+| ...
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~~~-~-~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h-~~~  510 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSS  510 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC-SSC
T ss_pred             CCCCCEEEEEcCCCEEEEEECCC-C-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC-CCC
Confidence            89999999999999999999754 3 47888999999999999999999999999999999995 78889999998 899


Q ss_pred             eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154          304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       304 v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                      |++++|+|++++|++++.||.|+|||. +++++..  +.+| ...|++++|+|||++ ++++.|+.|++||
T Consensus       511 v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~--~~~h-~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          511 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT--LTGH-SSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE--EECC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE--EcCC-CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            999999999999999999999999996 6788877  6688 556799999999998 8999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.4e-41  Score=329.44  Aligned_cols=332  Identities=11%  Similarity=0.075  Sum_probs=246.9

Q ss_pred             CCc-ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc--c
Q 014154           13 PPL-RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR--V   89 (430)
Q Consensus        13 ~~~-~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~--~   89 (430)
                      |.. .+++++ ++.|++|++..+     +....+.+|...|.+++|    +|+|++||+|+.||+|+|||+.+++..  .
T Consensus        28 pdg~~l~~~~-~~~v~l~~~~~~-----~~~~~~~~h~~~v~~~~~----spdg~~lasg~~d~~v~lWd~~~~~~~~~~   97 (611)
T 1nr0_A           28 PAGDKIQYCN-GTSVYTVPVGSL-----TDTEIYTEHSHQTTVAKT----SPSGYYCASGDVHGNVRIWDTTQTTHILKT   97 (611)
T ss_dssp             TTSSEEEEEE-TTEEEEEETTCS-----SCCEEECCCSSCEEEEEE----CTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CCCCEEEeCC-CCEEEEecCCCc-----ccCeEecCCCCceEEEEE----CCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence            444 455554 679999999876     677788999998665554    678999999999999999999755432  2


Q ss_pred             eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC---------------------CeeEEEEeeecCc---
Q 014154           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---------------------GKASMRSIEVTKV---  145 (430)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------g~~~v~~~~~~~~---  145 (430)
                      .+..        +...+.++.|.+...        .+++++.+                     |.-.|+++.+.++   
T Consensus        98 ~~~~--------~~~~v~~v~fs~dg~--------~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~  161 (611)
T 1nr0_A           98 TIPV--------FSGPVKDISWDSESK--------RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF  161 (611)
T ss_dssp             EEEC--------SSSCEEEEEECTTSC--------EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred             eecc--------cCCceEEEEECCCCC--------EEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCe
Confidence            3332        223555555443322        33333321                     2233445555553   


Q ss_pred             --cccCCCcceEEeee----------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154          146 --SAESSCSTVKSWNV----------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (430)
Q Consensus       146 --~~~~~~~~i~~~~~----------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  213 (430)
                        ++++.|+.+++|+.          .|...|.+++|+|++++|++++.|++|++||+.+++.+..+....  .....|.
T Consensus       162 ~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--~~~~~h~  239 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--LKNVAHS  239 (611)
T ss_dssp             EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--SSSCSSS
T ss_pred             EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc--ccccccC
Confidence              45667777777764          356789999999999999999999999999999988877663211  0011345


Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc------------------------------------------ce
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------------------------------------------PV  251 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------------------------------------~~  251 (430)
                      ..|.+++|  +|++.+|++++.|++|++||+.+++.                                          +.
T Consensus       240 ~~V~~v~~--spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~  317 (611)
T 1nr0_A          240 GSVFGLTW--SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID  317 (611)
T ss_dssp             SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEE
T ss_pred             CCEEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcc
Confidence            78999999  89999999999999999999987542                                          12


Q ss_pred             EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee-CC-------------------------------
Q 014154          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-GK-------------------------------  299 (430)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~-------------------------------  299 (430)
                      ..+.+|...|++++|+|++++|++++.|+.|++||+.+++....+. +|                               
T Consensus       318 ~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~  397 (611)
T 1nr0_A          318 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG  397 (611)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred             eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCC
Confidence            3445788999999999999999999999999999998765533220 00                               


Q ss_pred             -------------------------------------------------CCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          300 -------------------------------------------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       300 -------------------------------------------------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                                                                       +...+.+++|+|++++|++|+.|+.|++||+
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~  477 (611)
T 1nr0_A          398 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL  477 (611)
T ss_dssp             SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred             ccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEc
Confidence                                                             0234678999999999999999999999999


Q ss_pred             CCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          331 KTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .++...... ..+| ...|.+++|+|||++ ++++.|+.|++|+...
T Consensus       478 ~~~~~~~~~-~~~h-~~~v~~v~fspdg~~las~s~d~~v~~w~~~~  522 (611)
T 1nr0_A          478 SGASVSEVK-TIVH-PAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  522 (611)
T ss_dssp             ETTEEEEEE-EEEC-SSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cCCceeeee-ccCC-CCceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence            876543222 2456 556799999999999 9999999999999764

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.8e-41  Score=301.65  Aligned_cols=272  Identities=17%  Similarity=0.147  Sum_probs=231.8

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..++||+.||+|+||++..+   ...+...+.+|...+..++  +  +|++.++++++.|++|++||+.+++.+..+..+
T Consensus        49 ~~l~tgs~D~~v~vW~~~~~---~~~~~~~l~gh~~~v~~~~--~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~  121 (321)
T 3ow8_A           49 ETVVTGSLDDLVKVWKWRDE---RLDLQWSLEGHQLGVVSVD--I--SHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG  121 (321)
T ss_dssp             CEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEE--E--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CEEEEEcCCCCEEEEECCCC---CeeeeeeeccCCCCEEEEE--E--CCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC
Confidence            46999999999999999874   1123446788988855444  4  667889999999999999999999888777653


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                              ...+..+.+.+..        ..+++++.++.+.+|++....        .+..+. .+...|.+++|+|++
T Consensus       122 --------~~~~~~~~~spdg--------~~l~~g~~dg~v~i~~~~~~~--------~~~~~~-~~~~~v~~~~~spdg  176 (321)
T 3ow8_A          122 --------PVDAWTLAFSPDS--------QYLATGTHVGKVNIFGVESGK--------KEYSLD-TRGKFILSIAYSPDG  176 (321)
T ss_dssp             --------TTCCCCEEECTTS--------SEEEEECTTSEEEEEETTTCS--------EEEEEE-CSSSCEEEEEECTTS
T ss_pred             --------CccEEEEEECCCC--------CEEEEEcCCCcEEEEEcCCCc--------eeEEec-CCCceEEEEEECCCC
Confidence                    1234445554433        489999999999999975432        333333 456789999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      ++|++|+.|+.|++||+.+++.+..+..+.         ..|.+++|  +|++.+|++|+.|+.|++||++++. ....+
T Consensus       177 ~~lasg~~dg~i~iwd~~~~~~~~~~~~h~---------~~v~~l~~--spd~~~l~s~s~dg~i~iwd~~~~~-~~~~~  244 (321)
T 3ow8_A          177 KYLASGAIDGIINIFDIATGKLLHTLEGHA---------MPIRSLTF--SPDSQLLVTASDDGYIKIYDVQHAN-LAGTL  244 (321)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCCCEEEE--CTTSCEEEEECTTSCEEEEETTTCC-EEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEcccC---------CceeEEEE--cCCCCEEEEEcCCCeEEEEECCCcc-eeEEE
Confidence            999999999999999999999998888765         67999999  8999999999999999999999865 47889


Q ss_pred             eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       255 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      .+|...|.+++|+|++.+|++++.|+.|++||+++++++..+.+| ...|.+++|+|++.+|++++.||.|+|||+.
T Consensus       245 ~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          245 SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999999999999999999998 8999999999999999999999999999963

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.1e-42  Score=316.23  Aligned_cols=321  Identities=14%  Similarity=0.088  Sum_probs=255.6

Q ss_pred             CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCC
Q 014154           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE  102 (430)
Q Consensus        23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  102 (430)
                      +..+..|+....     .....+.+|.+.|.+++  |  +|++++|++|+.||+|+|||+.+++....+..+.       
T Consensus        45 ~~~~~~~~~~~~-----~~~~~l~gH~~~V~~~~--~--sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~-------  108 (380)
T 3iz6_a           45 GRTAVSFNPTDL-----VCCRTLQGHSGKVYSLD--W--TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC-------  108 (380)
T ss_dssp             GGGCCCCCCCCC-----EEEEEECCCSSCEEEEE--E--CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC-------
T ss_pred             ccccccccccee-----EEeecccccccEEEEEE--E--cCCCCEEEEEeCCCeEEEEECCCCccceEEecCC-------
Confidence            345566776665     67788999999965544  4  6788999999999999999999998888777642       


Q ss_pred             CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEe
Q 014154          103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGG  181 (430)
Q Consensus       103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~  181 (430)
                       ..+.++.+.+..        ..+++++.|+.+.+|++.......+ .....+.+ ..|.+.+.++.|.|+ +..|++|+
T Consensus       109 -~~v~~~~~s~~g--------~~las~~~d~~v~iw~~~~~~~~~~-~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s  177 (380)
T 3iz6_a          109 -PWVMECAFAPNG--------QSVACGGLDSACSIFNLSSQADRDG-NMPVSRVL-TGHKGYASSCQYVPDQETRLITGS  177 (380)
T ss_dssp             -TTCCCCEECTTS--------SEEEECCSSSCCEEEECCCCSSCCC-SSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEEC
T ss_pred             -CCEEEEEECCCC--------CEEEEeeCCCcEEEEECCCCccccC-Cccceeec-cCCCcceEEEEEecCCCCEEEEEC
Confidence             355555555433        4899999999999999864321100 00111222 257788999999986 56799999


Q ss_pred             CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCe
Q 014154          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI  261 (430)
Q Consensus       182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i  261 (430)
                      .|++|++||+.+++.+..+....    ...|...|.+++|. ++++.+|++|+.|+.|++||++....++..+.+|...|
T Consensus       178 ~D~~i~~wd~~~~~~~~~~~~~~----~~~h~~~v~~~~~~-~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v  252 (380)
T 3iz6_a          178 GDQTCVLWDVTTGQRISIFGSEF----PSGHTADVLSLSIN-SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI  252 (380)
T ss_dssp             TTSCEEEECTTTCCEEEEECCCS----SSSCCSCEEEEEEC-SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCC
T ss_pred             CCCcEEEEEcCCCcEEEEeeccc----CCCCccCeEEEEee-cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCe
Confidence            99999999999998887663321    11234779999994 34889999999999999999986556688999999999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       262 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  335 (430)
                      .+++|+|++++|++|+.|++|++||+++++.+..+..+.      ...|++++|+|++.+|++|+.||.|++||+.+++.
T Consensus       253 ~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~  332 (380)
T 3iz6_a          253 NSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM  332 (380)
T ss_dssp             CEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred             EEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCce
Confidence            999999999999999999999999999999988876541      12489999999999999999999999999999988


Q ss_pred             eeEEE--eeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          336 LSAVF--LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       336 ~~~~~--~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +..+.  ..+| ...|++++|+|+|.+ ++++.|+.|++|+...
T Consensus       333 ~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          333 VLNLGTLQNSH-EGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EEEECCSCSSC-CCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             EEEEecccCCC-CCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            77642  1456 556799999999998 9999999999999765

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.1e-41  Score=314.57  Aligned_cols=270  Identities=11%  Similarity=0.148  Sum_probs=236.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++|+.||+|+|||+.++     ++...+.+|...|..++  |  +|+|++|++|+.||+|+|||+.+++.+..+.+ 
T Consensus       121 ~~l~s~s~Dg~i~vwd~~~~-----~~~~~l~~h~~~V~~v~--~--~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~-  190 (410)
T 1vyh_C          121 SVMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQDIS--F--DHSGKLLASCSADMTIKLWDFQGFECIRTMHG-  190 (410)
T ss_dssp             SEEEEEESSSCEEEEETTTC-----CCCEEECCCSSCEEEEE--E--CTTSSEEEEEETTSCCCEEETTSSCEEECCCC-
T ss_pred             CEEEEEeCCCeEEEEECCCC-----cEEEEEeccCCcEEEEE--E--cCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC-
Confidence            46899999999999999987     67788999999855544  4  67888999999999999999998887777654 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                             +...+.++.+.+..        ..+++++.|+.+++|++....        .+..+. .|...|.++.++|++
T Consensus       191 -------h~~~V~~v~~~p~~--------~~l~s~s~D~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~g  246 (410)
T 1vyh_C          191 -------HDHNVSSVSIMPNG--------DHIVSASRDKTIKMWEVQTGY--------CVKTFT-GHREWVRMVRPNQDG  246 (410)
T ss_dssp             -------CSSCEEEEEECSSS--------SEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECTTS
T ss_pred             -------CCCCEEEEEEeCCC--------CEEEEEeCCCeEEEEECCCCc--------EEEEEe-CCCccEEEEEECCCC
Confidence                   34578888877654        489999999999999986432        455554 678899999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC--------------------CCEEEEEe
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--------------------HRKFVAGT  234 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~~~l~s~~  234 (430)
                      .+|++|+.|++|++||+.+++....+..|.         ..|.+++|  +|+                    +.+|++|+
T Consensus       247 ~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          247 TLIASCSNDQTVRVWVVATKECKAELREHR---------HVVECISW--APESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCceeeEecCCC---------ceEEEEEE--cCcccccchhhhccccccccCCCCCEEEEEe
Confidence            999999999999999999998888887765         67999999  554                    67899999


Q ss_pred             CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC
Q 014154          235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~  314 (430)
                      .|+.|++||++++. ++..+.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+| ...|++++|+|++.
T Consensus       316 ~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~  393 (410)
T 1vyh_C          316 RDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAP  393 (410)
T ss_dssp             TTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSS
T ss_pred             CCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC-CCcEEEEEEcCCCC
Confidence            99999999999865 58889999999999999999999999999999999999999999999998 89999999999999


Q ss_pred             eEEEEeCCCcEEEEECC
Q 014154          315 IIASCGLDSYLRFWDIK  331 (430)
Q Consensus       315 ~l~s~~~dg~i~iwd~~  331 (430)
                      +|++|+.||.|+||+++
T Consensus       394 ~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          394 YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEEETTSEEEEEC--
T ss_pred             EEEEEeCCCcEEEEeCC
Confidence            99999999999999863

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.1e-41  Score=303.83  Aligned_cols=289  Identities=16%  Similarity=0.163  Sum_probs=223.7

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccC---CCCCCCCCCceEEEEEeecCcccccccCceEEEEc
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAG---DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  130 (430)
                      +.++.|  +|||++|++++ |+++++||..............   ......+...+.++.|.+.         +.+++++
T Consensus        33 v~~~~f--s~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---------~~l~~~s  100 (344)
T 4gqb_B           33 LEAARY--RSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE---------RGILVAS  100 (344)
T ss_dssp             EEEEEE--CTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT---------TEEEEEE
T ss_pred             EEEEEE--CCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC---------CeEEEEE
Confidence            445555  78899888776 7888888742111000000000   0000012346777777653         4889999


Q ss_pred             cCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (430)
Q Consensus       131 ~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  210 (430)
                      .+|.++||++.....     ....+.....|...|.+++|+|++++|++|+.|++|++||+++++.+..+..|.      
T Consensus       101 ~dg~v~lWd~~~~~~-----~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~------  169 (344)
T 4gqb_B          101 DSGAVELWELDENET-----LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHA------  169 (344)
T ss_dssp             TTSEEEEEEECTTSS-----CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS------
T ss_pred             CCCEEEEEeccCCCc-----eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcC------
Confidence            999999999875431     112223334688999999999999999999999999999999999999998876      


Q ss_pred             cCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcceEEEe--ecCCCeEEEEecCC-CCEEEEEeCCCcEEEEE
Q 014154          211 FTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPD-SFNIYIGNGSGDLASVD  286 (430)
Q Consensus       211 ~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd  286 (430)
                         ..|.+++|  ++++ .+|++++.|++|++||+++++. ...+.  .|...+.+++|+|+ +++|++|+.|+.|++||
T Consensus       170 ---~~V~~~~~--~~~~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd  243 (344)
T 4gqb_B          170 ---AQVTCVAA--SPHKDSVFLSCSEDNRILLWDTRCPKP-ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD  243 (344)
T ss_dssp             ---SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTSSSC-EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ---CceEEEEe--cCCCCCceeeeccccccccccccccce-eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEE
Confidence               77999999  7776 5889999999999999998664 55543  45567999999995 57889999999999999


Q ss_pred             ccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--ccc
Q 014154          287 IRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAA  363 (430)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~  363 (430)
                      +++++++..+.+| ...|++++|+|++ .+|++|+.|++|+|||+.+++++.   +.+| ...|++++|+|++..  +++
T Consensus       244 ~~~~~~~~~~~~h-~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~---~~~H-~~~V~~v~~sp~~~~llas~  318 (344)
T 4gqb_B          244 TKSTSCVLSSAVH-SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR---SQAH-RDFVRDATWSPLNHSLLTTV  318 (344)
T ss_dssp             SCC--CCEEEECC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE---ECCC-SSCEEEEEECSSSTTEEEEE
T ss_pred             CCCCcEEEEEcCC-CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE---EcCC-CCCEEEEEEeCCCCeEEEEE
Confidence            9999999999998 8999999999998 589999999999999999887653   5678 556799999999875  578


Q ss_pred             CCCCceEecCCCC
Q 014154          364 ADAPMLEIQNGND  376 (430)
Q Consensus       364 ~~d~~i~~~~~~~  376 (430)
                      +.|++|++|+.+.
T Consensus       319 s~D~~v~~w~v~~  331 (344)
T 4gqb_B          319 GWDHQVVHHVVPT  331 (344)
T ss_dssp             ETTSCEEEEECCC
T ss_pred             cCCCeEEEEECCC
Confidence            8999999999876

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3e-41  Score=308.59  Aligned_cols=314  Identities=14%  Similarity=0.125  Sum_probs=229.4

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec------CCeEEEecCCCCcccc
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK------NGLTDILNPLNGDLRV   89 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~------dg~i~iwd~~~~~~~~   89 (430)
                      .++.++.+.....|++...         ....|...|.+  +.|  +|||++||+|+.      |+.|++|+..++....
T Consensus        18 ~~~~~~g~~~~~~w~~p~~---------~p~~H~~~V~~--v~f--SpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~   84 (357)
T 4g56_B           18 LYFQSNGSSKGSAWGRPVT---------APACMEVQIGA--VRY--RRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE   84 (357)
T ss_dssp             -------------------------------CCCSEEEE--EEE--CSSSCEEEEEECSSSSSCCEEEEEESSCC---CG
T ss_pred             eEEecCCCccccccCCCCC---------CcccccCCEEE--EEE--CCCCCEEEEEcCCCCccccCeEEEEECCCCCcce
Confidence            3455566677888887653         12357777554  455  788999999997      7889999988776554


Q ss_pred             eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (430)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~  169 (430)
                      .+...    ...+...+.++.|.+.         +.+++++.+|.++||++......     .....-...|...|.+++
T Consensus        85 ~~~~~----~~~~~~~V~~~~~s~d---------~~~l~~s~dg~v~lWd~~~~~~~-----~~~~~~~~~h~~~V~~v~  146 (357)
T 4g56_B           85 SLCTA----GVQTEAGVTDVAWVSE---------KGILVASDSGAVELWEILEKESL-----LVNKFAKYEHDDIVKTLS  146 (357)
T ss_dssp             GGCSE----EEECSSCEEEEEEETT---------TEEEEEETTSCEEEC-------------CCCCEEECCCSSCEEEEE
T ss_pred             eEecc----cCCCCCCEEEEEEcCC---------CCEEEEECCCEEEEeecccccee-----EEEeeccCCCCCCEEEEE
Confidence            43220    1124457888887653         47788899999999998654320     011222336788999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCC
Q 014154          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~  248 (430)
                      |+|++++|++|+.|+.|++||+++++.+..+..|.         ..|.+++|  ++++ .++++++.|+.|++||+++++
T Consensus       147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~---------~~v~~v~~--s~~~~~~~~s~~~dg~v~~wd~~~~~  215 (357)
T 4g56_B          147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS---------SEVNCVAA--CPGKDTIFLSCGEDGRILLWDTRKPK  215 (357)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEE--ccCCCceeeeeccCCceEEEECCCCc
Confidence            99999999999999999999999999999988765         77999999  6766 478999999999999999865


Q ss_pred             cceEEE--eecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC-CeEEEEeCCCc
Q 014154          249 RPVMSF--DFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL-PIIASCGLDSY  324 (430)
Q Consensus       249 ~~~~~~--~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~  324 (430)
                      . ...+  ..|...+.+++|+|++ .+|++|+.|+.|++||+++++++..+.+| ...|++++|+|++ ++|++|+.|++
T Consensus       216 ~-~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~lasgs~D~~  293 (357)
T 4g56_B          216 P-ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH-SQNITGLAYSYHSSPFLASISEDCT  293 (357)
T ss_dssp             C-BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCC-SSCEEEEEECSSSSCCEEEEETTSC
T ss_pred             e-eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEecc-ceeEEEEEEcCCCCCEEEEEeCCCE
Confidence            3 3333  3466789999999975 68889999999999999999999999998 8999999999987 68999999999


Q ss_pred             EEEEECCCCceeeEEEeeccccceEEeeeccc-cccc-cccCCCCceEecCCCCC
Q 014154          325 LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-KEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       325 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      |+|||+++++++..   .+| ...|++++|+| ++.+ ++++.|+.|++|+.+..
T Consensus       294 i~iwd~~~~~~~~~---~~H-~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          294 VAVLDADFSEVFRD---LSH-RDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEECTTSCEEEEE---CCC-SSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEEECCCCcEeEE---CCC-CCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999988765   357 55689999998 6777 89999999999998763

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.7e-39  Score=315.38  Aligned_cols=315  Identities=19%  Similarity=0.264  Sum_probs=262.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++++.||.|++|+...      +.+..+.+|...+..+  .+  +|+|++|++++.|+.|++||. +++.+..+.+ 
T Consensus       193 ~~l~~~~~d~~v~~w~~~~------~~~~~~~~~~~~v~~~--~~--s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~-  260 (577)
T 2ymu_A          193 QTIASASDDKTVKLWNRNG------QLLQTLTGHSSSVRGV--AF--SPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-  260 (577)
T ss_dssp             SCEEEEETTSEEEEECTTS------CEEEEEECCSSCEEEE--EE--CTTSSCEEEEETTSCEEEECT-TSCEEEEECC-
T ss_pred             CEEEEEcCCCEEEEEeCCC------cEEEEEecCCCCEEEE--EE--CCCCCEEEEEeCCCEEEEEeC-CCCEEEEEec-
Confidence            4688999999999999876      5777888898885544  44  678889999999999999996 5666666554 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe------------------eecCc----cccCCCc
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI------------------EVTKV----SAESSCS  152 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~------------------~~~~~----~~~~~~~  152 (430)
                             +...+.++.+.+..        ..+++++.++.+++|+.                  .+.++    ++++.++
T Consensus       261 -------~~~~v~~v~~~~d~--------~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~  325 (577)
T 2ymu_A          261 -------HSSSVNGVAFRPDG--------QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK  325 (577)
T ss_dssp             -------CSSCEEEEEECTTS--------SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -------CCCCEEEEEEcCCC--------CEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCC
Confidence                   33467777665433        37788888888888763                  23332    5667889


Q ss_pred             ceEEeeec---------CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee
Q 014154          153 TVKSWNVC---------ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (430)
Q Consensus       153 ~i~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (430)
                      .+++|+..         +...+.+++|+|++++|++++.|+.|++||. +++.+..+..+.         ..|.+++|  
T Consensus       326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~---------~~v~~~~~--  393 (577)
T 2ymu_A          326 TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS---------SSVRGVAF--  393 (577)
T ss_dssp             CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS---------SCEEEEEE--
T ss_pred             eEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC---------CCeEEEEE--
Confidence            99999854         3467899999999999999999999999996 456666666654         67999999  


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC
Q 014154          224 IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (430)
Q Consensus       224 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  303 (430)
                      +|++++|++++.|+.|++||... + .+..+.+|...|++++|+|++++|++++.|+.|++||+ +++.+..+.+| ...
T Consensus       394 s~dg~~l~~~~~d~~v~~~~~~~-~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~-~~~  469 (577)
T 2ymu_A          394 SPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGH-SSS  469 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEECTTC-C-EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECC-SSC
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCC-C-EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCC-CCC
Confidence            89999999999999999999753 3 57888999999999999999999999999999999996 67788889998 899


Q ss_pred             eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          304 IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       304 v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      |++++|+|++++|++++.|+.|++||. +++++..  +.+| ...|++++|+|+|++ ++++.|+.|++|+.+.
T Consensus       470 v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~--~~~h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~  539 (577)
T 2ymu_A          470 VRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT--LTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG  539 (577)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEE--EECC-SSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEE--EeCC-CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence            999999999999999999999999995 6787777  6677 455799999999998 8899999999999653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-39  Score=295.52  Aligned_cols=303  Identities=11%  Similarity=0.070  Sum_probs=237.2

Q ss_pred             eeeeecCCCCC-CcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154           40 KVVERWGDPHS-SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (430)
Q Consensus        40 ~~~~~~~~~~~-~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  118 (430)
                      .++.++.+|.. .  +.+++|  +|+|++||+|+.|++|+|||+.++........     ..+|...+.++.+.+..   
T Consensus         6 ~~~~~~~~h~~~~--v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~-----~~~h~~~v~~~~~sp~g---   73 (345)
T 3fm0_A            6 VLLGRVPAHPDSR--CWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWICKSVL-----SEGHQRTVRKVAWSPCG---   73 (345)
T ss_dssp             EEEEEECCSTTSC--EEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEEEEEE-----CSSCSSCEEEEEECTTS---
T ss_pred             EEeeeecCCCCCc--EEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCcceeeeee-----ccccCCcEEEEEECCCC---
Confidence            56778888877 6  445555  78899999999999999999977653322211     12455688888876644   


Q ss_pred             ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---
Q 014154          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE---  195 (430)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~---  195 (430)
                           ..+++++.|+.+.+|++.....      ..+..+. .|...|.+++|+|++++|++|+.|++|++||+.++.   
T Consensus        74 -----~~l~s~s~D~~v~iw~~~~~~~------~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  141 (345)
T 3fm0_A           74 -----NYLASASFDATTCIWKKNQDDF------ECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE  141 (345)
T ss_dssp             -----SEEEEEETTSCEEEEEECCC-E------EEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEE
T ss_pred             -----CEEEEEECCCcEEEEEccCCCe------EEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeE
Confidence                 4899999999999999753310      1233333 578899999999999999999999999999998753   


Q ss_pred             eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-cceEEEeecCCCeEEEEecCCCCEEE
Q 014154          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPDSFNIY  274 (430)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~sp~~~~l~  274 (430)
                      .+..+..|.         ..|.+++|  +|++.+|++++.|+.|++||+..+. .....+.+|...|.+++|+|++++|+
T Consensus       142 ~~~~~~~h~---------~~v~~~~~--~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~  210 (345)
T 3fm0_A          142 CVSVLNSHT---------QDVKHVVW--HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA  210 (345)
T ss_dssp             EEEEECCCC---------SCEEEEEE--CSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEEEecCcC---------CCeEEEEE--CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEE
Confidence            344555544         67999999  8999999999999999999998754 23567889999999999999999999


Q ss_pred             EEeCCCcEEEEEccCC---------------eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce----
Q 014154          275 IGNGSGDLASVDIRTG---------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL----  335 (430)
Q Consensus       275 ~~~~d~~i~iwd~~~~---------------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~----  335 (430)
                      +++.|++|++||....               +++..+.+.|...|++++|+|++..|++++.|+.|++|+...+..    
T Consensus       211 s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~  290 (345)
T 3fm0_A          211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP  290 (345)
T ss_dssp             EEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC
T ss_pred             EEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee
Confidence            9999999999997432               345566664588999999999999999999999999999875431    


Q ss_pred             eeEE---EeeccccceEEeeecccccc-c-cccCCCCceEecCCCCCc
Q 014154          336 LSAV---FLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       336 ~~~~---~~~~~~~~~v~~~~~s~~g~-~-~~~~~d~~i~~~~~~~~~  378 (430)
                      ...+   ...+| ...|++++|+|++. + ++++.||.|++|+....+
T Consensus       291 ~~~~~~~~~~~h-~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          291 TFSLTAHLHQAH-SQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             CEEEEEEETTSS-SSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             eEEEEeeecccc-cCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            1111   12456 55679999999984 4 899999999999987643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.1e-39  Score=290.10  Aligned_cols=291  Identities=18%  Similarity=0.246  Sum_probs=242.6

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      .+...+.+|...|.  ++.+  +|+|++|++|+.||.|++|++.+++....+..        +...+.++.+.+..    
T Consensus        14 ~~~~~~~gh~~~v~--~~~~--s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--------h~~~v~~~~~~~~~----   77 (312)
T 4ery_A           14 ALKFTLAGHTKAVS--SVKF--SPNGEWLASSSADKLIKIWGAYDGKFEKTISG--------HKLGISDVAWSSDS----   77 (312)
T ss_dssp             EEEEEECCCSSCEE--EEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECC--------CSSCEEEEEECTTS----
T ss_pred             eeEEEEcccCCcEE--EEEE--CCCCCEEEEeeCCCeEEEEeCCCcccchhhcc--------CCCceEEEEEcCCC----
Confidence            56677889999855  4455  67889999999999999999998887776654        34578877776543    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                          ..+++++.++.+.+|++....        .+..+. .|...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus        78 ----~~l~s~~~d~~i~vwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           78 ----NLLVSASDDKTLKIWDVSSGK--------CLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             ----SEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ----CEEEEECCCCEEEEEECCCCc--------EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence                489999999999999976332        444554 5778999999999999999999999999999999998888


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE-eecCCCeEEEEecCCCCEEEEEeC
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~  278 (430)
                      +..+.         ..|.+++|  +|++.+|++++.|+.|++||+++++. +..+ ..+...+.+++|+|++++|++++.
T Consensus       145 ~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  212 (312)
T 4ery_A          145 LPAHS---------DPVSAVHF--NRDGSLIVSSSYDGLCRIWDTASGQC-LKTLIDDDNPPVSFVKFSPNGKYILAATL  212 (312)
T ss_dssp             ECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCE-EEEECCSSCCCEEEEEECTTSSEEEEEET
T ss_pred             ecCCC---------CcEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCce-eeEEeccCCCceEEEEECCCCCEEEEEcC
Confidence            87764         67999999  89999999999999999999998664 4443 456678999999999999999999


Q ss_pred             CCcEEEEEccCCeEEeeeeCCCCCCe---EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc
Q 014154          279 SGDLASVDIRTGKLLGCFIGKCSGSI---RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA  355 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~~~~~~~~~~v---~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s  355 (430)
                      |+.|++||+++++++..+.+| ...+   ......+++.+|++|+.||.|++||+.+++.+..  +.+| ...|.+++|+
T Consensus       213 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h-~~~v~~~~~~  288 (312)
T 4ery_A          213 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK--LQGH-TDVVISTACH  288 (312)
T ss_dssp             TTEEEEEETTTTEEEEEECSS-CCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEE--ECCC-SSCEEEEEEC
T ss_pred             CCeEEEEECCCCcEEEEEEec-CCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhh--hhcc-CCcEEEEeec
Confidence            999999999999999999887 4432   2233346788999999999999999999998887  6678 5567999999


Q ss_pred             ccccc-cccC--CCCceEecCCC
Q 014154          356 DKEVA-NAAA--DAPMLEIQNGN  375 (430)
Q Consensus       356 ~~g~~-~~~~--~d~~i~~~~~~  375 (430)
                      |++.+ ++++  .|+.|++|+.+
T Consensus       289 p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          289 PTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSSSEEEEEECTTTCCEEEEECC
T ss_pred             CcCCceEEEEccCCccEEEecCC
Confidence            99998 5554  69999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4e-39  Score=292.86  Aligned_cols=267  Identities=13%  Similarity=0.195  Sum_probs=224.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc----cce
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RVA   90 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~----~~~   90 (430)
                      ..+++|+.||+|+|||+..+     +.+..+..|...+  .++.+  +|+|++|++|+.|+.|++|++.++..    ...
T Consensus        68 ~~l~s~s~Dg~v~iWd~~~~-----~~~~~~~~~~~~v--~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~  138 (340)
T 1got_B           68 RLLLSASQDGKLIIWDSYTT-----NKVHAIPLRSSWV--MTCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTC-----CEEEEEECSSSCE--EEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCC-----CcceEeecCCccE--EEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcceeEEE
Confidence            46899999999999999887     6777788888874  45555  77899999999999999999976542    222


Q ss_pred             eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (430)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~  170 (430)
                      +.        ++...+.++.+.+.         +.+++++.++.+++|++....        .+..+. .|...|.+++|
T Consensus       139 ~~--------~h~~~v~~~~~~~~---------~~l~s~s~d~~i~~wd~~~~~--------~~~~~~-~h~~~v~~~~~  192 (340)
T 1got_B          139 LA--------GHTGYLSCCRFLDD---------NQIVTSSGDTTCALWDIETGQ--------QTTTFT-GHTGDVMSLSL  192 (340)
T ss_dssp             EE--------CCSSCEEEEEEEET---------TEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEE
T ss_pred             ec--------CCCccEEEEEECCC---------CcEEEEECCCcEEEEECCCCc--------EEEEEc-CCCCceEEEEE
Confidence            22        24456776666432         479999999999999975332        344443 57889999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       171 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      +|++++|++|+.|+.|++||+.++.....+..|.         ..|.+++|  +|++.+|++|+.|+.|++||++.+.. 
T Consensus       193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~d~~v~iwd~~~~~~-  260 (340)
T 1got_B          193 APDTRLFVSGACDASAKLWDVREGMCRQTFTGHE---------SDINAICF--FPNGNAFATGSDDATCRLFDLRADQE-  260 (340)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred             CCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc---------CCEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCcE-
Confidence            9999999999999999999999999888887765         67999999  89999999999999999999998553 


Q ss_pred             eEEEee--cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154          251 VMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW  328 (430)
Q Consensus       251 ~~~~~~--~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iw  328 (430)
                      +..+..  +...|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+| ...|.+++|+|++.+|++|+.|+.|+||
T Consensus       261 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          261 LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecC-CCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            444442  2347999999999999999999999999999999999999998 8999999999999999999999999999


Q ss_pred             E
Q 014154          329 D  329 (430)
Q Consensus       329 d  329 (430)
                      |
T Consensus       340 d  340 (340)
T 1got_B          340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-40  Score=305.46  Aligned_cols=332  Identities=11%  Similarity=0.087  Sum_probs=256.8

Q ss_pred             ceeee----------cCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-
Q 014154           16 RALTF----------DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-   84 (430)
Q Consensus        16 ~l~t~----------~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-   84 (430)
                      .+++|          +.||.|+||++..+.  ..+.+..+ .|...  +.++.|  +|++++|++|+.||.|++||+.+ 
T Consensus        27 ~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~--~~~~~~~~-~~~~~--v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~   99 (416)
T 2pm9_A           27 LLVSGTVSGTVDANFSTDSSLELWSLLAAD--SEKPIASL-QVDSK--FNDLDW--SHNNKIIAGALDNGSLELYSTNEA   99 (416)
T ss_dssp             EEEEBCBSSCCCSSCCCCCCCEEEESSSGG--GCSCSCCC-CCSSC--EEEEEE--CSSSSCEEEEESSSCEEEECCSST
T ss_pred             EEEEEecCcccccccCCCCeEEEEEccCCC--CCcEEEEE-ecCCc--eEEEEE--CCCCCeEEEEccCCeEEEeecccc
Confidence            57777          889999999998851  11123333 36666  455555  77899999999999999999987 


Q ss_pred             ---CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEE-eeec
Q 014154           85 ---GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS-WNVC  160 (430)
Q Consensus        85 ---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~-~~~~  160 (430)
                         .+.+..+..        +...+.++.+.+...       ..+++++.++.+.+|++......... .....+ ....
T Consensus       100 ~~~~~~~~~~~~--------h~~~v~~~~~~~~~~-------~~l~s~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~~  163 (416)
T 2pm9_A          100 NNAINSMARFSN--------HSSSVKTVKFNAKQD-------NVLASGGNNGEIFIWDMNKCTESPSN-YTPLTPGQSMS  163 (416)
T ss_dssp             TSCCCEEEECCC--------SSSCCCEEEECSSST-------TBEEEECSSSCEEBCBTTTTSSCTTT-CCCBCCCCSCC
T ss_pred             cccccchhhccC--------CccceEEEEEcCCCC-------CEEEEEcCCCeEEEEECCCCcccccc-ccccccccccC
Confidence               234444433        445777788766533       58999999999999998654310000 001111 1124


Q ss_pred             CCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCC-
Q 014154          161 ASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDH-  237 (430)
Q Consensus       161 ~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg-  237 (430)
                      |...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+...   ..+...|.+++|  +|++ .+|++++.|+ 
T Consensus       164 ~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~--~~~~~~~l~~~~~d~~  238 (416)
T 2pm9_A          164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN---SGIKQQLSVVEW--HPKNSTRVATATGSDN  238 (416)
T ss_dssp             SSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS---SCCCCCEEEEEE--CSSCTTEEEEEECCSS
T ss_pred             CCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc---cccCCceEEEEE--CCCCCCEEEEEECCCC
Confidence            6788999999998 789999999999999999999988887765211   111367999999  7876 6999999999 


Q ss_pred             --cEEEEECCCCCcceEEEe-ecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154          238 --QVRLYDTSAQRRPVMSFD-FRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       238 --~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  313 (430)
                        .|++||++++..++..+. +|...|.+++|+| ++++|++++.|+.|++||+++++++..+.+| ...|.+++|+|++
T Consensus       239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~  317 (416)
T 2pm9_A          239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNWCFKTKFAPEA  317 (416)
T ss_dssp             SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSCCCCEEECTTC
T ss_pred             CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCceEEEEECCCC
Confidence              999999998756677888 8999999999999 8999999999999999999999999999998 8899999999999


Q ss_pred             -CeEEEEeCCCcEEEEECCCCceeeEEE--------------eecc------------------ccceEEeeeccccccc
Q 014154          314 -PIIASCGLDSYLRFWDIKTRQLLSAVF--------------LKQH------------------LNEVVFDSAFADKEVA  360 (430)
Q Consensus       314 -~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~~------------------~~~~v~~~~~s~~g~~  360 (430)
                       .+|++++.|+.|++||+.++.......              ..+.                  ....+.+++|+|+|++
T Consensus       318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  397 (416)
T 2pm9_A          318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL  397 (416)
T ss_dssp             TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred             CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence             899999999999999998765432210              0000                  1344578999999999


Q ss_pred             -cccCCCCceEecCCCC
Q 014154          361 -NAAADAPMLEIQNGND  376 (430)
Q Consensus       361 -~~~~~d~~i~~~~~~~  376 (430)
                       ++++.|+.|++|+...
T Consensus       398 la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          398 VQITPDGKGVSITNPKI  414 (416)
T ss_dssp             ECBCTTSSCBCCBCCCC
T ss_pred             EEEeCCCCeEEEEEecc
Confidence             8889999999999875

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.2e-38  Score=285.26  Aligned_cols=292  Identities=12%  Similarity=0.136  Sum_probs=236.2

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-----ccceeeccCCCCCCCCCCceEEEEEeec
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----LRVAISNAGDSGAQPEDDGIVGLHLFKR  114 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~  114 (430)
                      .+..++.+|.+.|..++++.+   ++++|++|+.|++|++|++....     ++..+.+        |...+.++.+.+.
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~---~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~s~d   76 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAG---QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG--------HSHIVQDCTLTAD   76 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSS---CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC--------CSSCEEEEEECTT
T ss_pred             EEEEEEccccceEEEEEccCC---CccEEEEecCCccEEEecCCCCCccccccceEEeC--------CcccEEEEEECCC
Confidence            566788999999766665431   23789999999999999986432     2334443        4557777776554


Q ss_pred             CcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 014154          115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC  194 (430)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  194 (430)
                      .        ..+++++.|+.+++|++....        .+..+. .|...|.+++|+|++.+|++|+.|++|++||++ +
T Consensus        77 g--------~~l~s~s~D~~v~~wd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~  138 (319)
T 3frx_A           77 G--------AYALSASWDKTLRLWDVATGE--------TYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-G  138 (319)
T ss_dssp             S--------SEEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-S
T ss_pred             C--------CEEEEEeCCCEEEEEECCCCC--------eeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-C
Confidence            3        489999999999999976432        444444 678899999999999999999999999999996 4


Q ss_pred             eeeEeeCCCCCCCCCCcCCcceeEEEEeecC------CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC
Q 014154          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID------DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP  268 (430)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp  268 (430)
                      ..+..+..|.         ..|.++.|  .|      ++..|++++.|+.|++||+++.. ....+.+|...|.+++|+|
T Consensus       139 ~~~~~~~~h~---------~~v~~~~~--~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp  206 (319)
T 3frx_A          139 QCLATLLGHN---------DWVSQVRV--VPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASP  206 (319)
T ss_dssp             CEEEEECCCS---------SCEEEEEE--CCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECT
T ss_pred             CeEEEEeccC---------CcEEEEEE--ccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcC
Confidence            5566666654         77999999  45      35589999999999999999854 4778889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee------
Q 014154          269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK------  342 (430)
Q Consensus       269 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------  342 (430)
                      ++++|++|+.|+.|++||+++++++..+..+  ..|.+++|+|++.+|++++.+ .+++|++..+..+..+...      
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~  283 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSK  283 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCG
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccccc
Confidence            9999999999999999999999999998864  689999999999999988765 4999999987776653211      


Q ss_pred             ccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          343 QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       343 ~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .+ ...+.+++|+|||++ ++++.|+.|++|+...
T Consensus       284 ~~-~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          284 AA-EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             GG-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             Cc-CcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            12 345789999999998 8999999999998753

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-38  Score=283.32  Aligned_cols=274  Identities=14%  Similarity=0.085  Sum_probs=228.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++|+.||+|++||+.++     ..+..+..|...+..+++    .|++++|++|+.|++|++||+.+++.+..+.+|
T Consensus        26 ~~l~s~~~dg~v~lWd~~~~-----~~~~~~~~~~~~v~~~~~----~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h   96 (304)
T 2ynn_A           26 PWVLTTLYSGRVELWNYETQ-----VEVRSIQVTETPVRAGKF----IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH   96 (304)
T ss_dssp             SEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEE----EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEcCCCcEEEEECCCC-----ceeEEeeccCCcEEEEEE----eCCCCEEEEECCCCEEEEEECCCCcEEEEEeCC
Confidence            46899999999999999987     777888888888655555    567789999999999999999999988887764


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-C
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~  173 (430)
                              .+.+.++.+.+..        ..+++++.|+.+++|++.....       ....+ ..|...|.+++|+| +
T Consensus        97 --------~~~v~~~~~~~~~--------~~l~sgs~D~~v~lWd~~~~~~-------~~~~~-~~h~~~v~~v~~~p~~  152 (304)
T 2ynn_A           97 --------PDYIRSIAVHPTK--------PYVLSGSDDLTVKLWNWENNWA-------LEQTF-EGHEHFVMCVAFNPKD  152 (304)
T ss_dssp             --------SSCEEEEEECSSS--------SEEEEEETTSCEEEEEGGGTTE-------EEEEE-CCCCSCEEEEEECTTC
T ss_pred             --------CCcEEEEEEcCCC--------CEEEEECCCCeEEEEECCCCcc-------hhhhh-cccCCcEEEEEECCCC
Confidence                    4578888876654        4899999999999999864321       22333 36788999999999 6


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      +.+|++|+.|++|++||+.++.....+..+.        ...+..+.|.+.+++.+|++|+.|+.|++||++++. ++..
T Consensus       153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~-~~~~  223 (304)
T 2ynn_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVAT  223 (304)
T ss_dssp             TTEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCCccceeccCC--------cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc-ccee
Confidence            7899999999999999998776655543321        256888899656688999999999999999999865 5889


Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC--eEEEEeCCCcEEEEECC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP--IIASCGLDSYLRFWDIK  331 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~i~iwd~~  331 (430)
                      +.+|...|.+++|+|++.+|++|+.||.|++||+++++++..+..| ...+.+++|+|++.  ++++|+.|| +.+|++.
T Consensus       224 ~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCS-SSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred             eCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCC-CccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence            9999999999999999999999999999999999999999999988 88999999999875  577777665 7788875


Q ss_pred             C
Q 014154          332 T  332 (430)
Q Consensus       332 ~  332 (430)
                      +
T Consensus       302 ~  302 (304)
T 2ynn_A          302 N  302 (304)
T ss_dssp             -
T ss_pred             c
Confidence            4

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.2e-38  Score=291.90  Aligned_cols=315  Identities=18%  Similarity=0.150  Sum_probs=242.5

Q ss_pred             CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCC--
Q 014154           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGA--   99 (430)
Q Consensus        22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~--   99 (430)
                      .+....+|+......-..++...+ +|...|.+++|    +|+|++||+|+ ++.++||++.+++.+..+..+.....  
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~f----spdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~  111 (393)
T 1erj_A           38 TNDYYILYNPALPREIDVELHKSL-DHTSVVCCVKF----SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  111 (393)
T ss_dssp             CSSCEEEECTTSCCCEEEEEEEEE-ECSSCCCEEEE----CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             CCceEEEECCCCCcccCceeEEec-CCCCEEEEEEE----CCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccccc
Confidence            344455777665311111222333 48888665555    67888999986 68999999999988777654321100  


Q ss_pred             --------CCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154          100 --------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus       100 --------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                              ..+...+.++.+.+..        ..+++++.++.+++|++....        .+..+. .|...|.+++|+
T Consensus       112 ~~~~~~~~~~~~~~v~~v~~s~dg--------~~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~  174 (393)
T 1erj_A          112 ENLNTSSSPSSDLYIRSVCFSPDG--------KFLATGAEDRLIRIWDIENRK--------IVMILQ-GHEQDIYSLDYF  174 (393)
T ss_dssp             ---------CCCCBEEEEEECTTS--------SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEC
T ss_pred             ccccccccCCCceeEEEEEECCCC--------CEEEEEcCCCeEEEEECCCCc--------EEEEEc-cCCCCEEEEEEc
Confidence                    0122246666665543        489999999999999975322        334443 678899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcc
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      |++++|++++.|++|++||+.+++....+..+          ..+.+++|  +| ++.+|++|+.|+.|++||++++.. 
T Consensus       175 p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~----------~~v~~~~~--~~~~~~~l~~~s~d~~v~iwd~~~~~~-  241 (393)
T 1erj_A          175 PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE----------DGVTTVAV--SPGDGKYIAAGSLDRAVRVWDSETGFL-  241 (393)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECS----------SCEEEEEE--CSTTCCEEEEEETTSCEEEEETTTCCE-
T ss_pred             CCCCEEEEecCCCcEEEEECCCCeeEEEEEcC----------CCcEEEEE--ECCCCCEEEEEcCCCcEEEEECCCCcE-
Confidence            99999999999999999999999887766532          56889999  66 899999999999999999998653 


Q ss_pred             eEEE-------eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCC------------eEEeeeeCCCCCCeEEEEecC
Q 014154          251 VMSF-------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG------------KLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       251 ~~~~-------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~------------~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      +..+       .+|...|.+++|+|++++|++|+.|+.|++||+++.            .+...+.+| ...|.+++|+|
T Consensus       242 ~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~  320 (393)
T 1erj_A          242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVLSVATTQ  320 (393)
T ss_dssp             EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEEEEEECG
T ss_pred             EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc-cCcEEEEEECC
Confidence            4444       578899999999999999999999999999999753            345677788 88999999999


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc------cccc-cccCCCCceEecCCCC
Q 014154          312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD------KEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~------~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ++.+|++|+.|+.|++||+.+++.+..  +.+| ...|.+++|++      ++.+ ++++.|+.|++|+...
T Consensus       321 ~~~~l~sgs~D~~v~iwd~~~~~~~~~--l~~h-~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          321 NDEYILSGSKDRGVLFWDKKSGNPLLM--LQGH-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             GGCEEEEEETTSEEEEEETTTCCEEEE--EECC-SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeEEEE--ECCC-CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            999999999999999999999998877  6788 45568898876      6776 9999999999998754

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.2e-38  Score=286.52  Aligned_cols=297  Identities=12%  Similarity=0.135  Sum_probs=230.3

Q ss_pred             eeeeecCCCCCCcceeeeeecC--CCCCceeEEeecCCeEEEecCCCCcc-------cceeeccCCCCCCCCCCceEEEE
Q 014154           40 KVVERWGDPHSSNCVLAASIDD--SQNDPLLAVARKNGLTDILNPLNGDL-------RVAISNAGDSGAQPEDDGIVGLH  110 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~--~p~g~~l~~g~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~  110 (430)
                      ++...+.+|...|..+++.+..  .+++++|++|+.|++|+|||+.+.+.       ...+.        .|...+.++.
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~--------~h~~~V~~~~   83 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT--------GHNHFVSDLA   83 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC--------CCSSCEEEEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc--------cCCCceEEEE
Confidence            4556788999998888775432  23889999999999999999875432       22222        3556788887


Q ss_pred             EeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Q 014154          111 LFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWD  190 (430)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d  190 (430)
                      +.+..        ..+++++.|+.+++|++....        .+..+. .|...|.+++|+|++++|++++.|++|++||
T Consensus        84 ~~~~~--------~~l~s~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd  146 (343)
T 2xzm_R           84 LSQEN--------CFAISSSWDKTLRLWDLRTGT--------TYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWN  146 (343)
T ss_dssp             ECSST--------TEEEEEETTSEEEEEETTSSC--------EEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred             ECCCC--------CEEEEEcCCCcEEEEECCCCc--------EEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence            76543        488999999999999986432        444444 6788999999999999999999999999999


Q ss_pred             CCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC----------CEEEEEeCCCcEEEEECCCCCcceEEEeecCCC
Q 014154          191 LDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH----------RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP  260 (430)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~  260 (430)
                      +... ........      ..|...|.+++|  +|++          .+|++++.|+.|++||...  .....+.+|...
T Consensus       147 ~~~~-~~~~~~~~------~~~~~~v~~~~~--~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~  215 (343)
T 2xzm_R          147 ILGE-CKFSSAEK------ENHSDWVSCVRY--SPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESN  215 (343)
T ss_dssp             SSSC-EEEECCTT------TSCSSCEEEEEE--CCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSC
T ss_pred             ccCC-ceeeeecc------cCCCceeeeeee--ccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCcccc
Confidence            9743 33332211      113477999999  6665          7999999999999999543  346788899999


Q ss_pred             eEEEEecCCCCEEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154          261 IKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       261 i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      |.+++|+|++++|++|+.|+.|++||++. ......+..  ...|.+++|+|++.+|+++ .|+.|++||+.+++.....
T Consensus       216 v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~--~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~  292 (343)
T 2xzm_R          216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA--GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVC  292 (343)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC--SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEE
T ss_pred             ceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC--CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceE
Confidence            99999999999999999999999999954 344444433  4579999999999887655 5778999999887765422


Q ss_pred             Eee-----------ccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          340 FLK-----------QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       340 ~~~-----------~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .+.           +| ...+.+++|+|+|.+ ++++.||.|++|+...
T Consensus       293 ~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          293 TIEAEPITKAEGQKGK-NPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             ECCCCSGGGBTTBCCS-CCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             EeecCcchhhhhhcCC-CCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            232           44 445799999999998 8999999999998643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-38  Score=283.36  Aligned_cols=302  Identities=10%  Similarity=0.065  Sum_probs=225.8

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQRE  117 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  117 (430)
                      +++..+.+|...|..++++    |+  +||+|+.|++|++||+..+.  ....+.      ...|...+.++.+.+..  
T Consensus         5 ~~~~~~~~h~~~v~~~~~s----~~--~las~~~D~~i~lw~~~~~~~~~~~~~~------~~~h~~~v~~v~~sp~~--   70 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFS----QG--ILATGSTDRKIKLVSVKYDDFTLIDVLD------ETAHKKAIRSVAWRPHT--   70 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEE----TT--EEEEEESSSCEEEEECSSSCCEEEEEEC------TTCCCSCEEEEEECTTS--
T ss_pred             ccceeeccCCCceeeeccC----CC--EEEEEcCCCEEEEEEecCCCeEEEEEEe------cCCccCCEEEEEECCCC--
Confidence            5677888999996665554    33  89999999999999997653  222221      11255688888876644  


Q ss_pred             cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 014154          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC---  194 (430)
Q Consensus       118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---  194 (430)
                            ..+++++.|+.+++|++....... .....+..+. .|...|.+++|+|++++|++|+.|++|++||+...   
T Consensus        71 ------~~las~s~D~~v~iw~~~~~~~~~-~~~~~~~~~~-~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~  142 (330)
T 2hes_X           71 ------SLLAAGSFDSTVSIWAKEESADRT-FEMDLLAIIE-GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE  142 (330)
T ss_dssp             ------SEEEEEETTSCEEEEEC--------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC
T ss_pred             ------CEEEEEeCCCcEEEEEcccCcCcc-ccceeEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC
Confidence                  489999999999999975321100 0011233332 57889999999999999999999999999999432   


Q ss_pred             -eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-cceEEEeecCCCeEEEEecCC--C
Q 014154          195 -EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEPD--S  270 (430)
Q Consensus       195 -~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~sp~--~  270 (430)
                       +.+..+..|.         ..|.+++|  +|++.+|++|+.|++|++||...+. .++..+.+|...|.+++|+|+  +
T Consensus       143 ~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  211 (330)
T 2hes_X          143 YECISVLQEHS---------QDVKHVIW--HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGV  211 (330)
T ss_dssp             CEEEEEECCCS---------SCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSS
T ss_pred             eEEEEEeccCC---------CceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCe
Confidence             4455666654         77999999  8999999999999999999987642 357788999999999999998  6


Q ss_pred             CEEEEEeCCCcEEEEEccCC--------eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce--eeEEE
Q 014154          271 FNIYIGNGSGDLASVDIRTG--------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL--LSAVF  340 (430)
Q Consensus       271 ~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~  340 (430)
                      .+|++|+.|++|++||++.+        .+...+...|...|++++|++++ +|++++.||.|+|||..+++.  +... 
T Consensus       212 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-  289 (330)
T 2hes_X          212 FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-  289 (330)
T ss_dssp             CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-
T ss_pred             eEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-
Confidence            78999999999999999764        44555665338899999999765 899999999999999987742  2221 


Q ss_pred             eeccccceEEeeeccc--cccc-cccCCCCceEecCCCC
Q 014154          341 LKQHLNEVVFDSAFAD--KEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       341 ~~~~~~~~v~~~~~s~--~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ..+|....+.+++|+|  ++.+ ++++.|+.|++|+...
T Consensus       290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          290 ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            3566443689999999  6776 8999999999998754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-37  Score=284.32  Aligned_cols=268  Identities=14%  Similarity=0.197  Sum_probs=223.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc------c
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL------R   88 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~------~   88 (430)
                      .+++||+.||+|+|||...+     +....+..|...+.  ++.+  +|+|.+|++|+.|+.+++|++.....      .
T Consensus        77 ~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~~~~~~v~--~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~  147 (354)
T 2pbi_B           77 RRIVSSSQDGKVIVWDSFTT-----NKEHAVTMPCTWVM--ACAY--APSGCAIACGGLDNKCSVYPLTFDKNENMAAKK  147 (354)
T ss_dssp             SEEEEEETTSEEEEEETTTC-----CEEEEEECSSSCCC--EEEE--CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGC
T ss_pred             CEEEEEeCCCeEEEEECCCC-----CcceEEecCCCCEE--EEEE--CCCCCEEEEeeCCCCEEEEEEeccccccccccc
Confidence            57999999999999999886     56666777777754  4455  77899999999999999999864421      1


Q ss_pred             ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE
Q 014154           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (430)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~  168 (430)
                      ..+.        .|...+..+.+.+..        ..+++++.|+++++|++....        .+..+. .|...|.++
T Consensus       148 ~~~~--------~h~~~v~~~~~~~~~--------~~l~t~s~D~~v~lwd~~~~~--------~~~~~~-~h~~~v~~~  202 (354)
T 2pbi_B          148 KSVA--------MHTNYLSACSFTNSD--------MQILTASGDGTCALWDVESGQ--------LLQSFH-GHGADVLCL  202 (354)
T ss_dssp             EEEE--------ECSSCEEEEEECSSS--------SEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEE
T ss_pred             eeee--------ccCCcEEEEEEeCCC--------CEEEEEeCCCcEEEEeCCCCe--------EEEEEc-CCCCCeEEE
Confidence            2222        345577777766544        489999999999999986432        455554 678899999


Q ss_pred             EEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154          169 KVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       169 ~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  246 (430)
                      +++|  ++++|++|+.|+.|++||+++++.+..+..|.         ..|.+++|  +|++.+|++|+.|++|++||++.
T Consensus       203 ~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~v~lwd~~~  271 (354)
T 2pbi_B          203 DLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE---------SDVNSVRY--YPSGDAFASGSDDATCRLYDLRA  271 (354)
T ss_dssp             EECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCeEEEEE--eCCCCEEEEEeCCCeEEEEECCC
Confidence            9988  46899999999999999999999988887765         77999999  89999999999999999999998


Q ss_pred             CCcceEEEeec--CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCc
Q 014154          247 QRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY  324 (430)
Q Consensus       247 ~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~  324 (430)
                      ... +..+..+  ...+.+++|+|++++|++|+.|+.|++||+.+++.+..+.+| ...|++++|+|++.+|++|+.|+.
T Consensus       272 ~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h-~~~v~~l~~spdg~~l~sgs~D~~  349 (354)
T 2pbi_B          272 DRE-VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH-ENRVSTLRVSPDGTAFCSGSWDHT  349 (354)
T ss_dssp             TEE-EEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC-SSCEEEEEECTTSSCEEEEETTSE
T ss_pred             CcE-EEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC-CCcEEEEEECCCCCEEEEEcCCCC
Confidence            543 4455433  347899999999999999999999999999999999999998 899999999999999999999999


Q ss_pred             EEEEE
Q 014154          325 LRFWD  329 (430)
Q Consensus       325 i~iwd  329 (430)
                      |+||+
T Consensus       350 v~vW~  354 (354)
T 2pbi_B          350 LRVWA  354 (354)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-38  Score=296.82  Aligned_cols=313  Identities=10%  Similarity=0.069  Sum_probs=251.3

Q ss_pred             ceeeecCCCceEEEEc----cCCCC-----CcceeeeecCC------CCCCcceeeeeecCCCCCceeEEeecCCeEEEe
Q 014154           16 RALTFDSLGLIKVIEA----RGEHG-----GVPKVVERWGD------PHSSNCVLAASIDDSQNDPLLAVARKNGLTDIL   80 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~----~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iw   80 (430)
                      .|++|+.||.|++|++    ..+..     ....+...+..      |...  +.++.|  +|++++|++|+.||.|++|
T Consensus        60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~--s~~~~~l~~~~~dg~i~i~  135 (425)
T 1r5m_A           60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQ--VTCLAW--SHDGNSIVTGVENGELRLW  135 (425)
T ss_dssp             EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBC--EEEEEE--CTTSSEEEEEETTSCEEEE
T ss_pred             EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCc--eEEEEE--cCCCCEEEEEeCCCeEEEE
Confidence            6899999999999999    76510     11112222222      4556  455555  7788999999999999999


Q ss_pred             cCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec
Q 014154           81 NPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC  160 (430)
Q Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~  160 (430)
                      | .+++.+..+..        +...+.++.+.+..        ..+++++.++.+.+|++....        .+..+.. 
T Consensus       136 ~-~~~~~~~~~~~--------~~~~v~~~~~~~~~--------~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~-  189 (425)
T 1r5m_A          136 N-KTGALLNVLNF--------HRAPIVSVKWNKDG--------THIISMDVENVTILWNVISGT--------VMQHFEL-  189 (425)
T ss_dssp             E-TTSCEEEEECC--------CCSCEEEEEECTTS--------SEEEEEETTCCEEEEETTTTE--------EEEEECC-
T ss_pred             e-CCCCeeeeccC--------CCccEEEEEECCCC--------CEEEEEecCCeEEEEECCCCc--------EEEEeec-
Confidence            9 56776666654        34578878776543        489999999999999985332        3333332 


Q ss_pred             CCCc---------------eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          161 ASGT---------------IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       161 ~~~~---------------i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                      +...               +.+++|+|+ ..+++++.++.|++||+.+++.+..+..+.         ..|.+++|  +|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~---------~~i~~~~~--~~  257 (425)
T 1r5m_A          190 KETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHH---------GPISVLEF--ND  257 (425)
T ss_dssp             C---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCS---------SCEEEEEE--ET
T ss_pred             cccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCC---------CceEEEEE--CC
Confidence            1222               888999986 468889999999999999988887777654         67999999  78


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154          226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIR  305 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~  305 (430)
                      ++.+|++++.|+.|++||+++++ ++..+..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+..| ...|.
T Consensus       258 ~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~  334 (425)
T 1r5m_A          258 TNKLLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIF  334 (425)
T ss_dssp             TTTEEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccC-CccEE
Confidence            99999999999999999999855 578888899999999999999 9999999999999999999999999988 88999


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCCCc--------------------eeeEEEeeccccc-eEEeeeccccccc-ccc
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKTRQ--------------------LLSAVFLKQHLNE-VVFDSAFADKEVA-NAA  363 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~~~~-~v~~~~~s~~g~~-~~~  363 (430)
                      +++|+|++.+|++++.||.|++||+.+++                    .+..  +.+|... .|.+++|+|++++ +++
T Consensus       335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~  412 (425)
T 1r5m_A          335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS--YQSSQDNDYIFDLSWNCAGNKISVA  412 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE--ECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh--hcCcccCCceEEEEccCCCceEEEE
Confidence            99999999999999999999999999887                    6666  5566443 6899999999998 899


Q ss_pred             CCCCceEecCCC
Q 014154          364 ADAPMLEIQNGN  375 (430)
Q Consensus       364 ~~d~~i~~~~~~  375 (430)
                      +.||.|++|+.+
T Consensus       413 ~~dg~i~iw~~~  424 (425)
T 1r5m_A          413 YSLQEGSVVAIP  424 (425)
T ss_dssp             ESSSCCEEEECC
T ss_pred             ecCceEEEEeec
Confidence            999999999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.3e-39  Score=295.24  Aligned_cols=282  Identities=13%  Similarity=0.151  Sum_probs=224.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|++|+.||+|+|||+.++     +....+..|...+..+  .|  +|+|++|++|+.|+.|++||+.+......... 
T Consensus        79 ~~l~s~s~D~~v~iWd~~~~-----~~~~~~~~h~~~v~~~--~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~-  148 (380)
T 3iz6_a           79 NWIVSASQDGRLIVWNALTS-----QKTHAIKLHCPWVMEC--AF--APNGQSVACGGLDSACSIFNLSSQADRDGNMP-  148 (380)
T ss_dssp             SCEEEEETTSEEEEEETTTT-----EEEEEEECCCTTCCCC--EE--CTTSSEEEECCSSSCCEEEECCCCSSCCCSST-
T ss_pred             CEEEEEeCCCeEEEEECCCC-----ccceEEecCCCCEEEE--EE--CCCCCEEEEeeCCCcEEEEECCCCccccCCcc-
Confidence            56999999999999999987     7778888898885544  44  77899999999999999999865331110000 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee----ecCCCceEEEEE
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN----VCASGTIAFSKV  170 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~----~~~~~~i~~~~~  170 (430)
                      ....+.+|...+..+.+.+...       ..+++++.|+.+++|++....        .+..+.    ..|...|.++++
T Consensus       149 ~~~~~~gh~~~v~~~~~~~~~~-------~~l~s~s~D~~i~~wd~~~~~--------~~~~~~~~~~~~h~~~v~~~~~  213 (380)
T 3iz6_a          149 VSRVLTGHKGYASSCQYVPDQE-------TRLITGSGDQTCVLWDVTTGQ--------RISIFGSEFPSGHTADVLSLSI  213 (380)
T ss_dssp             TCCBCCCCSSCCCCCBCCSSSS-------SCEEEECTTSCEEEECTTTCC--------EEEEECCCSSSSCCSCEEEEEE
T ss_pred             ceeeccCCCcceEEEEEecCCC-------CEEEEECCCCcEEEEEcCCCc--------EEEEeecccCCCCccCeEEEEe
Confidence            0001223445565555555433       579999999999999976433        344432    346788999999


Q ss_pred             cC-CCCEEEEEeCCCeEEEEECC-CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154          171 DI-SEKFSLFGGKGVEVNVWDLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       171 ~~-~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  248 (430)
                      ++ ++++|++|+.|++|++||++ ....+..+..|.         ..|.+++|  +|++.+|++|+.|++|++||++++.
T Consensus       214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~---------~~v~~v~~--~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE---------GDINSVKF--FPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS---------SCCCEEEE--CTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC---------CCeEEEEE--ecCCCeEEEEcCCCeEEEEECCCCc
Confidence            87 88999999999999999997 446666777665         77999999  8999999999999999999999865


Q ss_pred             cceEEEeecC-------CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee----eCCCCCCeEEEEecCCCCeEE
Q 014154          249 RPVMSFDFRE-------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF----IGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       249 ~~~~~~~~~~-------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      . +..+..+.       ..|++++|+|++++|++|+.||.|++||+.+++.+..+    .+| ...|++++|+|++.+|+
T Consensus       283 ~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~  360 (380)
T 3iz6_a          283 Q-LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH-EGRISCLGLSSDGSALC  360 (380)
T ss_dssp             E-EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC-CCCCCEEEECSSSSEEE
T ss_pred             E-EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC-CCceEEEEECCCCCEEE
Confidence            3 55555432       24899999999999999999999999999999887777    456 88999999999999999


Q ss_pred             EEeCCCcEEEEECCCCc
Q 014154          318 SCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       318 s~~~dg~i~iwd~~~~~  334 (430)
                      +|+.|+.|+||++...+
T Consensus       361 sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          361 TGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EECTTSCEEEEECCSSS
T ss_pred             EeeCCCCEEEEecCCCc
Confidence            99999999999998654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-37  Score=279.67  Aligned_cols=275  Identities=9%  Similarity=0.112  Sum_probs=225.6

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|++|+.||+|++|++..........+..+.+|...+..++  +  +|+|++|++|+.|++|+|||+.+++.+..+.+|
T Consensus        31 ~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~--~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h  106 (319)
T 3frx_A           31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT--L--TADGAYALSASWDKTLRLWDVATGETYQRFVGH  106 (319)
T ss_dssp             TEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEE--E--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             cEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEE--E--CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccC
Confidence            468999999999999997532222245667889999855544  4  678899999999999999999999988877664


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-  173 (430)
                              ...+.++.+.+..        ..+++++.|+.+++|++..         ..+..+ ..|...|.++.++|. 
T Consensus       107 --------~~~v~~~~~~~~~--------~~l~s~s~D~~i~vwd~~~---------~~~~~~-~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A          107 --------KSDVMSVDIDKKA--------SMIISGSRDKTIKVWTIKG---------QCLATL-LGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             --------SSCEEEEEECTTS--------CEEEEEETTSCEEEEETTS---------CEEEEE-CCCSSCEEEEEECCC-
T ss_pred             --------CCcEEEEEEcCCC--------CEEEEEeCCCeEEEEECCC---------CeEEEE-eccCCcEEEEEEccCC
Confidence                    4578877776543        4899999999999999742         133333 367788999999985 


Q ss_pred             -----CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154          174 -----EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       174 -----~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  248 (430)
                           +..|++++.|+.|++||+.+.+....+..|.         ..|.+++|  +|++.+|++|+.|+.|++||+.+++
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~---------~~v~~~~~--sp~g~~l~s~~~dg~i~iwd~~~~~  229 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN---------SNINTLTA--SPDGTLIASAGKDGEIMLWNLAAKK  229 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEEEEECCCC---------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTTE
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC---------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCc
Confidence                 4589999999999999999998888887765         77999999  8999999999999999999999855


Q ss_pred             cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC-------CCCCeEEEEecCCCCeEEEEeC
Q 014154          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------CSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                       ++..+..+ ..|.+++|+|++.+|++++.+ .+++|++..+..+..+..+       +...+.+++|+|+|++|++|+.
T Consensus       230 -~~~~~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~  306 (319)
T 3frx_A          230 -AMYTLSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT  306 (319)
T ss_dssp             -EEEEEECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred             -EEEEecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence             46666654 689999999999999988755 5999999888777666432       2567899999999999999999


Q ss_pred             CCcEEEEECCCC
Q 014154          322 DSYLRFWDIKTR  333 (430)
Q Consensus       322 dg~i~iwd~~~~  333 (430)
                      ||.|+|||+.++
T Consensus       307 Dg~i~vWd~~t~  318 (319)
T 3frx_A          307 DNVIRVWQVMTA  318 (319)
T ss_dssp             TSCEEEEEEEEC
T ss_pred             CceEEEEEEeec
Confidence            999999998764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.5e-38  Score=286.08  Aligned_cols=285  Identities=12%  Similarity=0.051  Sum_probs=214.2

Q ss_pred             CCcceeeecCCCceEEEEccCCC----C--CcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc
Q 014154           13 PPLRALTFDSLGLIKVIEARGEH----G--GVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD   86 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~   86 (430)
                      |..++++++.|+++|+||.....    .  ...........+...|.  ++.|  +|++ +|++|+.||+|+|||+.+++
T Consensus        40 ~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~--s~d~-~l~~~s~dg~v~lWd~~~~~  114 (344)
T 4gqb_B           40 SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVA--DLTW--VGER-GILVASDSGAVELWELDENE  114 (344)
T ss_dssp             TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEE--EEEE--ETTT-EEEEEETTSEEEEEEECTTS
T ss_pred             CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEE--EEEE--eCCC-eEEEEECCCEEEEEeccCCC
Confidence            34566666678899999854210    0  00001111112344544  4444  4554 58899999999999999988


Q ss_pred             ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (430)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~  166 (430)
                      .+..+...    ...|.+.|.++.+.+..        ..+++++.++.+++|++....        .+..+. .|...|.
T Consensus       115 ~~~~~~~~----~~~H~~~V~~v~~spdg--------~~l~sgs~d~~i~iwd~~~~~--------~~~~~~-~h~~~V~  173 (344)
T 4gqb_B          115 TLIVSKFC----KYEHDDIVSTVSVLSSG--------TQAVSGSKDICIKVWDLAQQV--------VLSSYR-AHAAQVT  173 (344)
T ss_dssp             SCEEEEEE----EECCSSCEEEEEECTTS--------SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEE
T ss_pred             ceeEeecc----ccCCCCCEEEEEECCCC--------CEEEEEeCCCeEEEEECCCCc--------EEEEEc-CcCCceE
Confidence            76654421    12355688888876654        489999999999999976432        444554 6889999


Q ss_pred             EEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEEC
Q 014154          167 FSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDT  244 (430)
Q Consensus       167 ~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~  244 (430)
                      +++|+|++ .+|++++.|++|++||+++++....+....       +...+.+++|  +| ++.+|++|+.|+.|++||+
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~--~p~~~~~l~sg~~dg~v~~wd~  244 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA-------PGYLPTSLAW--HPQQSEVFVFGDENGTVSLVDT  244 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----------CCCEEEEEE--CSSCTTEEEEEETTSEEEEEES
T ss_pred             EEEecCCCCCceeeeccccccccccccccceeeeeecce-------eeccceeeee--cCCCCcceEEeccCCcEEEEEC
Confidence            99999987 578999999999999999988877765432       1245889999  55 5678999999999999999


Q ss_pred             CCCCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC-eEEEEeCC
Q 014154          245 SAQRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLD  322 (430)
Q Consensus       245 ~~~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d  322 (430)
                      ++++ ++..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++++ .+.+| ...|++++|+|++. +|++++.|
T Consensus       245 ~~~~-~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H-~~~V~~v~~sp~~~~llas~s~D  321 (344)
T 4gqb_B          245 KSTS-CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAH-RDFVRDATWSPLNHSLLTTVGWD  321 (344)
T ss_dssp             CC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCC-SSCEEEEEECSSSTTEEEEEETT
T ss_pred             CCCc-EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCC-CCCEEEEEEeCCCCeEEEEEcCC
Confidence            9865 588999999999999999998 57999999999999999998865 57788 89999999999986 56799999


Q ss_pred             CcEEEEECCCCce
Q 014154          323 SYLRFWDIKTRQL  335 (430)
Q Consensus       323 g~i~iwd~~~~~~  335 (430)
                      ++|++|++.+...
T Consensus       322 ~~v~~w~v~~~~~  334 (344)
T 4gqb_B          322 HQVVHHVVPTEPL  334 (344)
T ss_dssp             SCEEEEECCC---
T ss_pred             CeEEEEECCCCCC
Confidence            9999999987543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3e-38  Score=295.71  Aligned_cols=323  Identities=11%  Similarity=0.094  Sum_probs=251.8

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .++++++.||.|++||+..+     +....+..|  .+ .....+  +|++++|++|+.||.|++||+.+++....+.. 
T Consensus        69 ~~l~~~~~d~~v~i~d~~~~-----~~~~~~~~~--~~-~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-  137 (420)
T 3vl1_A           69 SHLYKARLDGHDFLFNTIIR-----DGSKMLKRA--DY-TAVDTA--KLQMRRFILGTTEGDIKVLDSNFNLQREIDQA-  137 (420)
T ss_dssp             TTEEEEEETTEEEEEECCSE-----ETTTTSCSC--CE-EEEEEE--CSSSCEEEEEETTSCEEEECTTSCEEEEETTS-
T ss_pred             CeEEEEEcCCcEEEEEeccc-----ceeeEEecC--Cc-eEEEEE--ecCCCEEEEEECCCCEEEEeCCCcceeeeccc-
Confidence            56899999999999999886     444444444  22 222234  67889999999999999999988876665443 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                             +...+.++.+.+..        ..+++++.++.+.+|++....        .+..+. .|...|.+++|+|++
T Consensus       138 -------h~~~v~~~~~~~~~--------~~l~s~s~d~~i~iwd~~~~~--------~~~~~~-~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          138 -------HVSEITKLKFFPSG--------EALISSSQDMQLKIWSVKDGS--------NPRTLI-GHRATVTDIAIIDRG  193 (420)
T ss_dssp             -------SSSCEEEEEECTTS--------SEEEEEETTSEEEEEETTTCC--------CCEEEE-CCSSCEEEEEEETTT
T ss_pred             -------ccCccEEEEECCCC--------CEEEEEeCCCeEEEEeCCCCc--------CceEEc-CCCCcEEEEEEcCCC
Confidence                   45688888876644        489999999999999986432        444554 678999999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCC---------------CcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG---------------IFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  239 (430)
                      ++|++++.|+.|++||+.+++.+..+..+......               ..+...+.+++|  +|++.+|++++.||.|
T Consensus       194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i  271 (420)
T 3vl1_A          194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF--GTYGKYVIAGHVSGVI  271 (420)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS--SCTTEEEEEEETTSCE
T ss_pred             CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE--cCCCCEEEEEcCCCeE
Confidence            99999999999999999999998888754322111               011244556666  7899999999999999


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      ++||++++.........|...|.+++|+|++. +|++|+.||.|++||+++++. +..+..|+...|.++.| +++.+|+
T Consensus       272 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~  350 (420)
T 3vl1_A          272 TVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFV  350 (420)
T ss_dssp             EEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEE
T ss_pred             EEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEE
Confidence            99999987654444455888999999999998 999999999999999998754 77788765888988865 5778999


Q ss_pred             EEeCCCcEEEEECCCCceeeE-------EEeeccccceEEeeecccccc----ccccCCCCceEecCCCC
Q 014154          318 SCGLDSYLRFWDIKTRQLLSA-------VFLKQHLNEVVFDSAFADKEV----ANAAADAPMLEIQNGND  376 (430)
Q Consensus       318 s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~v~~~~~s~~g~----~~~~~~d~~i~~~~~~~  376 (430)
                      +++.|+.|++|++........       ..+.++ ...+.+++|+|++.    +++++.+|.+.+|+...
T Consensus       351 s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          351 SSGFDTSIKLDIISDPESERPAIEFETPTFLVSN-DDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EETTTEEEEEEEECCTTCCSCEECTTSCEEECCS-SCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             EecCCccEEEEeccCCCCCccceeccCccEEccC-CcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            999999999999876322111       013344 45579999999999    58888999999998754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-36  Score=287.05  Aligned_cols=305  Identities=14%  Similarity=0.196  Sum_probs=258.2

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ...+++|+.||.|++||+.++     +.+..+.+|...+..++++      +++|++|+.||.|++||+.+++.+..+.+
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~~~~~~~  197 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTG-----KCLRTLVGHTGGVWSSQMR------DNIIISGSTDRTLKVWNAETGECIHTLYG  197 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTC-----CEEEECCCCSSCEEEEEEE------TTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCEEEEEECCCcEEEEECCCC-----cEEEEEcCCCCCEEEEEec------CCEEEEEeCCCeEEEEECCcCcEEEEECC
Confidence            467899999999999999987     7888899999986655553      35899999999999999999988877765


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                      +        ...+.++.+.   .       ..+++++.+|.+.+|++....        .+..+. .|...|.++++  +
T Consensus       198 h--------~~~v~~~~~~---~-------~~l~s~s~dg~i~~wd~~~~~--------~~~~~~-~~~~~v~~~~~--~  248 (445)
T 2ovr_B          198 H--------TSTVRCMHLH---E-------KRVVSGSRDATLRVWDIETGQ--------CLHVLM-GHVAAVRCVQY--D  248 (445)
T ss_dssp             C--------SSCEEEEEEE---T-------TEEEEEETTSEEEEEESSSCC--------EEEEEE-CCSSCEEEEEE--C
T ss_pred             C--------CCcEEEEEec---C-------CEEEEEeCCCEEEEEECCCCc--------EEEEEc-CCcccEEEEEE--C
Confidence            3        4477777662   2       589999999999999986432        344444 57789999999  6


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      ++++++++.|+.|++||+.+++.+..+..+.         ..|.++.|    ++.++++++.|+.|++||+++++ ++..
T Consensus       249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~~-~~~~  314 (445)
T 2ovr_B          249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHT---------NRVYSLQF----DGIHVVSGSLDTSIRVWDVETGN-CIHT  314 (445)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCS---------SCEEEEEE----CSSEEEEEETTSCEEEEETTTCC-EEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeEEecCCC---------CceEEEEE----CCCEEEEEeCCCeEEEEECCCCC-EEEE
Confidence            8899999999999999999999998887765         67899988    78899999999999999999866 5788


Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC---CCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      +.+|...+.++.++  +++|++|+.||.|++||+++++.+..+..   | ...|++++|+  +.+|++++.||.|++||+
T Consensus       315 ~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~--~~~l~s~~~dg~v~iwd~  389 (445)
T 2ovr_B          315 LTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFN--KNFVITSSDDGTVKLWDL  389 (445)
T ss_dssp             ECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred             EcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCC-CCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence            89999999988875  56999999999999999999999999886   5 7899999995  579999999999999999


Q ss_pred             CCCceeeEEEe--eccccceEEeeeccccccc-cccCCCCc----eEecCCCCC
Q 014154          331 KTRQLLSAVFL--KQHLNEVVFDSAFADKEVA-NAAADAPM----LEIQNGNDT  377 (430)
Q Consensus       331 ~~~~~~~~~~~--~~~~~~~v~~~~~s~~g~~-~~~~~d~~----i~~~~~~~~  377 (430)
                      .+++.+..+..  .+.....+++++|+|++.+ ++++.||.    +.+|+....
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          390 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            99999887521  1223667899999999999 88999997    999998763

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.1e-36  Score=273.20  Aligned_cols=310  Identities=11%  Similarity=0.062  Sum_probs=245.1

Q ss_pred             eeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCC
Q 014154           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDS   97 (430)
Q Consensus        18 ~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~   97 (430)
                      +++..++.+.+|.....     .......+|...+..+++    +|++++|++++ ||.|++||+.++.....+....  
T Consensus        25 ~~~~~~~~~~~~~~~~~-----~~~~~~~~h~~~v~~~~~----~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~--   92 (337)
T 1gxr_A           25 PVPFPPDALIGPGIPRH-----ARQINTLNHGEVVCAVTI----SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD--   92 (337)
T ss_dssp             ECCCCTTSSSSTTCCSE-----EEEEEEECCSSCCCEEEE----CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE--
T ss_pred             EeecCCCcEeccccCCc-----cccceeccCCCceEEEEE----ecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc--
Confidence            34555555555544432     222233468888665554    67888999998 9999999998776444433211  


Q ss_pred             CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEE
Q 014154           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS  177 (430)
Q Consensus        98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l  177 (430)
                       ...+...+.++.+.+..        ..+++++.++.+.+|++.....       ........+...|.+++|+|++++|
T Consensus        93 -~~~~~~~v~~~~~~~~~--------~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l  156 (337)
T 1gxr_A           93 -CLNRDNYIRSCKLLPDG--------CTLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDSKVC  156 (337)
T ss_dssp             -CSCTTSBEEEEEECTTS--------SEEEEEESSSEEEEEECCCC---------EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             -ccCCCCcEEEEEEcCCC--------CEEEEEcCCCcEEEEECCCCCc-------ceeeecccCCCceEEEEECCCCCEE
Confidence             11345678888776643        4889999999999999864321       1222233567889999999999999


Q ss_pred             EEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec
Q 014154          178 LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR  257 (430)
Q Consensus       178 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  257 (430)
                      ++++.|+.|++||+++++.+..+..+.         ..+.+++|  +|++.+|++++.|+.|++||+++++ .+..+ .+
T Consensus       157 ~~~~~dg~v~~~d~~~~~~~~~~~~~~---------~~i~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~-~~  223 (337)
T 1gxr_A          157 FSCCSDGNIAVWDLHNQTLVRQFQGHT---------DGASCIDI--SNDGTKLWTGGLDNTVRSWDLREGR-QLQQH-DF  223 (337)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTE-EEEEE-EC
T ss_pred             EEEeCCCcEEEEeCCCCceeeeeeccc---------CceEEEEE--CCCCCEEEEEecCCcEEEEECCCCc-eEeee-cC
Confidence            999999999999999999888887654         67999999  8999999999999999999999865 34444 46


Q ss_pred             CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceee
Q 014154          258 ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  337 (430)
                      ...+.+++|+|++++|++++.++.|++||+++++.. .+..| ...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus       224 ~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~  301 (337)
T 1gxr_A          224 TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  301 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCC-ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE
Confidence            789999999999999999999999999999988764 56676 8899999999999999999999999999999998875


Q ss_pred             EEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154          338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       338 ~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      ..   .| ...+.+++|+|++++ ++++.|+.|++|+.
T Consensus       302 ~~---~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          302 QS---KE-SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EE---EC-SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             Ee---cC-CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            42   24 455799999999998 88999999999975

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.7e-36  Score=273.16  Aligned_cols=319  Identities=11%  Similarity=0.100  Sum_probs=236.6

Q ss_pred             eecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCC-CceeEEeecCCeEEEecCCCCcccceeeccCCC
Q 014154           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDLRVAISNAGDS   97 (430)
Q Consensus        19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~   97 (430)
                      +|...|+..+|-.... .+...+..+|.+|.+.|.++++    +|+ +++||+|+.||+|+|||+.+++........   
T Consensus         9 ~g~d~g~~~~~~~~~~-~~~~~l~~tL~GH~~~V~~v~~----sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~---   80 (340)
T 4aow_A            9 SGVDLGTENLYFQSMM-TEQMTLRGTLKGHNGWVTQIAT----TPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR---   80 (340)
T ss_dssp             ------------------CEEEEEEEECCCSSCEEEEEE----CTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEE---
T ss_pred             cccCCCCccEEEEEcc-CCceEEEEEECCccCCEEEEEE----eCCCCCEEEEEcCCCeEEEEECCCCCcccceeeE---
Confidence            4445565444422221 1222566789999999766665    454 579999999999999999766533221110   


Q ss_pred             CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEE
Q 014154           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS  177 (430)
Q Consensus        98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l  177 (430)
                      .+.++...+.++.+.+..        ..+++++.++.+.+|.....         ........+...+..+.+++++++|
T Consensus        81 ~l~~h~~~V~~~~~s~dg--------~~l~s~~~d~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l  143 (340)
T 4aow_A           81 ALRGHSHFVSDVVISSDG--------QFALSGSWDGTLRLWDLTTG---------TTTRRFVGHTKDVLSVAFSSDNRQI  143 (340)
T ss_dssp             EECCCSSCEEEEEECTTS--------SEEEEEETTSEEEEEETTTT---------EEEEEEECCSSCEEEEEECTTSSCE
T ss_pred             EEeCCCCCEEEEEECCCC--------CEEEEEcccccceEEeeccc---------ceeeeecCCCCceeEEEEeecCccc
Confidence            022355688888776544        48999999999999986533         2233333556788889999999999


Q ss_pred             EEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee
Q 014154          178 LFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF  256 (430)
Q Consensus       178 ~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  256 (430)
                      ++++.|+.+++||+........ ...+         ...+..++|.+.+...++++++.|+.|++||+++++ .+..+.+
T Consensus       144 ~s~s~d~~~~~~d~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~~~~~  213 (340)
T 4aow_A          144 VSGSRDKTIKLWNTLGVCKYTVQDESH---------SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIG  213 (340)
T ss_dssp             EEEETTSCEEEECTTSCEEEEECSSSC---------SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEEEECC
T ss_pred             eeecCCCeEEEEEeCCCceEEEEeccc---------cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eeeEecC
Confidence            9999999999999976554332 2222         367899999544556789999999999999999865 5788899


Q ss_pred             cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154          257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (430)
Q Consensus       257 ~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  336 (430)
                      |...|++++|+|++++|++|+.|+.|++||+++.+++..+..+  ..|.++.|+|++.+ ++++.|+.|++||++++..+
T Consensus       214 h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~  290 (340)
T 4aow_A          214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIV  290 (340)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCce-eeccCCCEEEEEECCCCeEE
Confidence            9999999999999999999999999999999999999988874  68999999998764 56667999999999988777


Q ss_pred             eEEE-------eeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          337 SAVF-------LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       337 ~~~~-------~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ..+.       ..+| ...|++++|+|+|++ ++++.||.|++|+...
T Consensus       291 ~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          291 DELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             EEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             EeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            6532       1244 455799999999998 9999999999998754

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=276.33  Aligned_cols=284  Identities=13%  Similarity=0.107  Sum_probs=216.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc--ccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~   92 (430)
                      ..|++|+.||+|+||++..+.  .........+|...|.  ++.|  +|+|++|++|+.|++|+||++..+.  .+..+.
T Consensus        29 ~~las~~~D~~i~iw~~~~~~--~~~~~~~~~~h~~~v~--~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  102 (345)
T 3fm0_A           29 TLLASCGGDRRIRIWGTEGDS--WICKSVLSEGHQRTVR--KVAW--SPCGNYLASASFDATTCIWKKNQDDFECVTTLE  102 (345)
T ss_dssp             SCEEEEETTSCEEEEEEETTE--EEEEEEECSSCSSCEE--EEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred             CEEEEEcCCCeEEEEEcCCCc--ceeeeeeccccCCcEE--EEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence            568899999999999998751  0001122357888855  4555  7788999999999999999987664  334444


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      +        |...+.++.+.+..        ..+++++.|+.+++|++.....     ...+..+. .|...|.+++|+|
T Consensus       103 ~--------h~~~v~~v~~sp~~--------~~l~s~s~D~~v~iwd~~~~~~-----~~~~~~~~-~h~~~v~~~~~~p  160 (345)
T 3fm0_A          103 G--------HENEVKSVAWAPSG--------NLLATCSRDKSVWVWEVDEEDE-----YECVSVLN-SHTQDVKHVVWHP  160 (345)
T ss_dssp             C--------CSSCEEEEEECTTS--------SEEEEEETTSCEEEEEECTTSC-----EEEEEEEC-CCCSCEEEEEECS
T ss_pred             C--------CCCCceEEEEeCCC--------CEEEEEECCCeEEEEECCCCCC-----eEEEEEec-CcCCCeEEEEECC
Confidence            3        45688888876644        4899999999999999864321     01233333 5778899999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCe--eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC--
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR--  248 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--  248 (430)
                      ++++|++++.|+.|++||+.++.  ....+..|.         ..|.+++|  +|++++|++++.|++|++||.....  
T Consensus       161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~---------~~v~~l~~--sp~g~~l~s~s~D~~v~iW~~~~~~~~  229 (345)
T 3fm0_A          161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHE---------STVWSLAF--DPSGQRLASCSDDRTVRIWRQYLPGNE  229 (345)
T ss_dssp             SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred             CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCC---------CceEEEEE--CCCCCEEEEEeCCCeEEEeccccCCCC
Confidence            99999999999999999998765  345666654         77999999  8999999999999999999964321  


Q ss_pred             ------------cceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe--------E-EeeeeCCCCCCeEE
Q 014154          249 ------------RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------L-LGCFIGKCSGSIRS  306 (430)
Q Consensus       249 ------------~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--------~-~~~~~~~~~~~v~~  306 (430)
                                  ..+..+.+ |...|.+++|+|++..|++++.|+.|++|+.....        . ...+.+| ...|++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~  308 (345)
T 3fm0_A          230 QGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH-SQDVNC  308 (345)
T ss_dssp             TCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS-SSCEEE
T ss_pred             ccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc-cCcEeE
Confidence                        11233444 78899999999999999999999999999987542        1 1223466 889999


Q ss_pred             EEecCCC-CeEEEEeCCCcEEEEECCCCceeeE
Q 014154          307 IARHPTL-PIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       307 i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      ++|+|++ .+|++|+.||.|++|++.+++....
T Consensus       309 v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~  341 (345)
T 3fm0_A          309 VAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHH  341 (345)
T ss_dssp             EEECSSSTTEEEEEETTSCEEEEEECC------
T ss_pred             eEEeCCCceEEEEcCCCCcEEEEEecCCCCccc
Confidence            9999998 4999999999999999998876654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.1e-36  Score=280.41  Aligned_cols=283  Identities=17%  Similarity=0.197  Sum_probs=223.9

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCC----------------CcceeeeeecCCCCCceeEEeecCCe
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS----------------SNCVLAASIDDSQNDPLLAVARKNGL   76 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~p~g~~l~~g~~dg~   76 (430)
                      |..++++.+.++.++||++..+     +.+..+..+..                ...+.+++|  +|+|++|++|+.||.
T Consensus        74 pdg~~la~g~~~~v~i~~~~~g-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~  146 (393)
T 1erj_A           74 NDGEYLATGCNKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRL  146 (393)
T ss_dssp             TTSSEEEEECBSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEE--CTTSSEEEEEETTSC
T ss_pred             CCCCEEEEEcCCcEEEEEecCC-----CEEEEecCccccccccccccccccCCCceeEEEEEE--CCCCCEEEEEcCCCe
Confidence            4444444455899999999887     55555554431                223556777  889999999999999


Q ss_pred             EEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEE
Q 014154           77 TDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKS  156 (430)
Q Consensus        77 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~  156 (430)
                      |+|||+.+++.+..+.+|        ...+.++.+.+..        ..+++++.|+.+++|++....        .+..
T Consensus       147 i~iwd~~~~~~~~~~~~h--------~~~v~~~~~~p~~--------~~l~s~s~d~~v~iwd~~~~~--------~~~~  202 (393)
T 1erj_A          147 IRIWDIENRKIVMILQGH--------EQDIYSLDYFPSG--------DKLVSGSGDRTVRIWDLRTGQ--------CSLT  202 (393)
T ss_dssp             EEEEETTTTEEEEEECCC--------SSCEEEEEECTTS--------SEEEEEETTSEEEEEETTTTE--------EEEE
T ss_pred             EEEEECCCCcEEEEEccC--------CCCEEEEEEcCCC--------CEEEEecCCCcEEEEECCCCe--------eEEE
Confidence            999999998877776653        4578888876654        489999999999999975332        2222


Q ss_pred             eeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC
Q 014154          157 WNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (430)
Q Consensus       157 ~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  235 (430)
                        ..+...+.+++++| ++++|++|+.|+.|++||+.++..+..+.....  ....|...|.+++|  +|++.+|++|+.
T Consensus       203 --~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~--~~~g~~l~s~s~  276 (393)
T 1erj_A          203 --LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE--SGTGHKDSVYSVVF--TRDGQSVVSGSL  276 (393)
T ss_dssp             --EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEE--CTTSSEEEEEET
T ss_pred             --EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc--CCCCCCCCEEEEEE--CCCCCEEEEEeC
Confidence              33567899999999 899999999999999999999887776643211  01224478999999  899999999999


Q ss_pred             CCcEEEEECCCCC-----------cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154          236 DHQVRLYDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI  304 (430)
Q Consensus       236 dg~i~iwd~~~~~-----------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  304 (430)
                      |+.|++||++...           .....+.+|...|.+++|+|++.+|++|+.|+.|++||+++++++..+.+| ...|
T Consensus       277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h-~~~v  355 (393)
T 1erj_A          277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH-RNSV  355 (393)
T ss_dssp             TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC-SSCE
T ss_pred             CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC-CCCE
Confidence            9999999997532           134567789999999999999999999999999999999999999999998 8999


Q ss_pred             EEEEecC------CCCeEEEEeCCCcEEEEECCCC
Q 014154          305 RSIARHP------TLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       305 ~~i~~~~------~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      .+++|++      ++.+|++|+.||.|+||++...
T Consensus       356 ~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          356 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            9999886      6789999999999999998643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.8e-37  Score=281.40  Aligned_cols=281  Identities=14%  Similarity=0.111  Sum_probs=209.6

Q ss_pred             cceeeecC------CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154           15 LRALTFDS------LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus        15 ~~l~t~~~------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      ..|++|+.      ||.|++|+...+. ....+.....+|...|..++|    +|++. +++++.||+|+|||+.+++..
T Consensus        55 ~~las~s~d~~~~wd~~v~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~----s~d~~-~l~~s~dg~v~lWd~~~~~~~  128 (357)
T 4g56_B           55 ALLLAASSLSSRTWGGSIWVFKDPEGA-PNESLCTAGVQTEAGVTDVAW----VSEKG-ILVASDSGAVELWEILEKESL  128 (357)
T ss_dssp             CEEEEEECSSSSSCCEEEEEESSCC----CGGGCSEEEECSSCEEEEEE----ETTTE-EEEEETTSCEEEC--------
T ss_pred             CEEEEEcCCCCccccCeEEEEECCCCC-cceeEecccCCCCCCEEEEEE----cCCCC-EEEEECCCEEEEeecccccee
Confidence            45777776      6789999887652 111223334457777555554    45655 566788999999999887754


Q ss_pred             ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE
Q 014154           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS  168 (430)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~  168 (430)
                      .....    ....|.+.+.++.+.+..        ..+++++.++.+++|++....        .+..+. .|...|.++
T Consensus       129 ~~~~~----~~~~h~~~V~~v~~spdg--------~~l~sgs~dg~v~iwd~~~~~--------~~~~~~-~h~~~v~~v  187 (357)
T 4g56_B          129 LVNKF----AKYEHDDIVKTLSVFSDG--------TQAVSGGKDFSVKVWDLSQKA--------VLKSYN-AHSSEVNCV  187 (357)
T ss_dssp             CCCCE----EECCCSSCEEEEEECSSS--------SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEE
T ss_pred             EEEee----ccCCCCCCEEEEEECCCC--------CEEEEEeCCCeEEEEECCCCc--------EEEEEc-CCCCCEEEE
Confidence            43321    012355688888887654        389999999999999975332        444444 578899999


Q ss_pred             EEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEECCC
Q 014154          169 KVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       169 ~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~  246 (430)
                      +|++++. ++++++.|+.|++||+++++....+....       +...+.+++|  +|+ +.+|++|+.|+.|++||+++
T Consensus       188 ~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~-------~~~~v~~v~~--sp~~~~~la~g~~d~~i~~wd~~~  258 (357)
T 4g56_B          188 AACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA-------SDTIPTSVTW--HPEKDDTFACGDETGNVSLVNIKN  258 (357)
T ss_dssp             EECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT-------CCSCEEEEEE--CTTSTTEEEEEESSSCEEEEESSC
T ss_pred             EEccCCCceeeeeccCCceEEEECCCCceeeeeeecc-------ccccccchhh--hhcccceEEEeecccceeEEECCC
Confidence            9999874 78999999999999999887765544322       2266899999  665 56899999999999999998


Q ss_pred             CCcceEEEeecCCCeEEEEecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC-CCCeEEEEeCCCc
Q 014154          247 QRRPVMSFDFRETPIKAVAEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCGLDSY  324 (430)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~  324 (430)
                      ++ ++..+.+|...|++++|+|++ ++|++|+.|++|+|||+++++++..+ +| ...|++++|+| ++.+|++++.||+
T Consensus       259 ~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H-~~~V~~vafsP~d~~~l~s~s~Dg~  335 (357)
T 4g56_B          259 PD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH-RDFVTGVAWSPLDHSKFTTVGWDHK  335 (357)
T ss_dssp             GG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC-SSCEEEEEECSSSTTEEEEEETTSC
T ss_pred             Cc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC-CCCEEEEEEeCCCCCEEEEEcCCCe
Confidence            65 588899999999999999987 67999999999999999999887655 66 89999999999 7899999999999


Q ss_pred             EEEEECCCCc
Q 014154          325 LRFWDIKTRQ  334 (430)
Q Consensus       325 i~iwd~~~~~  334 (430)
                      |++|++.+..
T Consensus       336 v~iW~~~~~~  345 (357)
T 4g56_B          336 VLHHHLPSEG  345 (357)
T ss_dssp             EEEEECC---
T ss_pred             EEEEECCCCC
Confidence            9999997543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.6e-36  Score=276.01  Aligned_cols=276  Identities=12%  Similarity=0.088  Sum_probs=217.6

Q ss_pred             cceeeecCCCceEEEEccCCCCC--cceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGG--VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      ..|+||+.||+|++||+..+...  .......+.+|...|..++  +  +|++.+|++|+.|++|++||+.+++.+..+.
T Consensus        40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~--~--~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~  115 (343)
T 2xzm_R           40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLA--L--SQENCFAISSSWDKTLRLWDLRTGTTYKRFV  115 (343)
T ss_dssp             CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEE--E--CSSTTEEEEEETTSEEEEEETTSSCEEEEEE
T ss_pred             CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEE--E--CCCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            56899999999999999764211  1234567888998855554  4  6788899999999999999999998888776


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee--ecCCCceEEEEE
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKV  170 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~  170 (430)
                      +|        ...+.++.+.+..        ..+++++.++.+++|++...         ......  ..|...|.+++|
T Consensus       116 ~h--------~~~v~~v~~sp~~--------~~l~s~~~d~~i~~wd~~~~---------~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R          116 GH--------QSEVYSVAFSPDN--------RQILSAGAEREIKLWNILGE---------CKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             CC--------CSCEEEEEECSST--------TEEEEEETTSCEEEEESSSC---------EEEECCTTTSCSSCEEEEEE
T ss_pred             CC--------CCcEEEEEECCCC--------CEEEEEcCCCEEEEEeccCC---------ceeeeecccCCCceeeeeee
Confidence            54        4578888876644        48999999999999997521         111111  146678999999


Q ss_pred             cCCC----------CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154          171 DISE----------KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (430)
Q Consensus       171 ~~~~----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  240 (430)
                      +|++          .+|++++.|+.|++||. .......+..|.         ..|.+++|  +|++.+|++|+.|+.|+
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~---------~~v~~~~~--s~~g~~l~sgs~dg~v~  238 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE---------SNVNHLSI--SPNGKYIATGGKDKKLL  238 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS---------SCEEEEEE--CTTSSEEEEEETTCEEE
T ss_pred             ccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc---------ccceEEEE--CCCCCEEEEEcCCCeEE
Confidence            9976          79999999999999994 456666666654         67999999  89999999999999999


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe--eee-----------CCCCCCeEEE
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFI-----------GKCSGSIRSI  307 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~-----------~~~~~~v~~i  307 (430)
                      +||+.....+...+. +...|.+++|+|++.+++++ .|+.|++||+.+++...  .+.           +| ...|.++
T Consensus       239 iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~  315 (343)
T 2xzm_R          239 IWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTSL  315 (343)
T ss_dssp             EEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEEE
T ss_pred             EEECCCCcccceeec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEEE
Confidence            999965444455543 45679999999999887655 57889999998776533  333           45 7789999


Q ss_pred             EecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154          308 ARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~  334 (430)
                      +|+|++++|++|+.||.|++|++.++.
T Consensus       316 ~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          316 AWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             EECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             EECCCCCeEEEecCCceEEEEEEEccC
Confidence            999999999999999999999987653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.5e-36  Score=284.74  Aligned_cols=317  Identities=9%  Similarity=0.113  Sum_probs=252.8

Q ss_pred             CCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce
Q 014154           11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (430)
Q Consensus        11 ~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~   90 (430)
                      ...+..+++|+.||+|++||+.++     +.+..+.+|...+..+++    .|++ +|++|+.||+|++||+.+++.+..
T Consensus       129 ~~~~~~l~sgs~dg~i~vwd~~~~-----~~~~~~~~h~~~V~~l~~----~~~~-~l~s~s~dg~i~vwd~~~~~~~~~  198 (464)
T 3v7d_B          129 QFEDNYVITGADDKMIRVYDSINK-----KFLLQLSGHDGGVWALKY----AHGG-ILVSGSTDRTVRVWDIKKGCCTHV  198 (464)
T ss_dssp             EEETTEEEEEETTSCEEEEETTTT-----EEEEEECCCSSCEEEEEE----CSTT-EEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EECCCEEEEEcCCCcEEEEECCCC-----cEEEEEeCCCcCEEEEEE----cCCC-EEEEEeCCCCEEEEECCCCcEEEE
Confidence            334568999999999999999998     788889999999665555    4455 899999999999999999988777


Q ss_pred             eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccC--------------CCc-ceE
Q 014154           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES--------------SCS-TVK  155 (430)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~--------------~~~-~i~  155 (430)
                      +.+        +...+.++.+.+...      ...+++++.++.+.+|++.........              ... .+.
T Consensus       199 ~~~--------h~~~v~~l~~~~~~~------~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (464)
T 3v7d_B          199 FEG--------HNSTVRCLDIVEYKN------IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  264 (464)
T ss_dssp             ECC--------CSSCEEEEEEEESSS------CEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEE
T ss_pred             ECC--------CCCccEEEEEecCCC------CCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEE
Confidence            664        345888888775322      148999999999999998754321000              000 122


Q ss_pred             EeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC
Q 014154          156 SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN  235 (430)
Q Consensus       156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  235 (430)
                      .. ..|...+.++  ++++++|++++.|+.|++||+.+++.+..+..+.         ..|.+++|  +|++.+|++|+.
T Consensus       265 ~~-~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~sg~~  330 (464)
T 3v7d_B          265 VL-RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT---------DRIYSTIY--DHERKRCISASM  330 (464)
T ss_dssp             EE-CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--ETTTTEEEEEET
T ss_pred             Ec-cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC---------CCEEEEEE--cCCCCEEEEEeC
Confidence            22 2455666665  5678999999999999999999999998887765         77999999  889999999999


Q ss_pred             CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCe
Q 014154          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (430)
Q Consensus       236 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  315 (430)
                      |+.|++||+++++ ++..+.+|...|.+++|+  +.+|++++.||.|++||++++.....+..  ...+..++|+|++.+
T Consensus       331 dg~i~vwd~~~~~-~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          331 DTTIRIWDLENGE-LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHH--TNLSAITTFYVSDNI  405 (464)
T ss_dssp             TSCEEEEETTTTE-EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEC--TTCCCEEEEEECSSE
T ss_pred             CCcEEEEECCCCc-EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecC--CCCccEEEEEeCCCE
Confidence            9999999999865 588899999999999998  46999999999999999999887666643  667888999999999


Q ss_pred             EEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecC
Q 014154          316 IASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQN  373 (430)
Q Consensus       316 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~  373 (430)
                      |++++ ||.|++||+.+++.+..+ +.++ ...|++++|+++..+++++.|+.+.+|-
T Consensus       406 l~~~~-dg~i~iwd~~~g~~~~~~-~~~~-~~~v~~v~~~~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          406 LVSGS-ENQFNIYNLRSGKLVHAN-ILKD-ADQIWSVNFKGKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             EEEEE-TTEEEEEETTTCCEEESC-TTTT-CSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             EEEec-CCeEEEEECCCCcEEehh-hccC-CCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence            99998 899999999999998763 3445 5668999997433336666777666553

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-36  Score=274.42  Aligned_cols=300  Identities=13%  Similarity=0.151  Sum_probs=245.7

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      .....+.+|...|..+  .+  +|+|++|++|+.||.|++||+.+++.+..+..        +...+.++.+.+..    
T Consensus        23 ~~~~~l~~h~~~v~~~--~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------h~~~v~~~~~~~~~----   86 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQV--KY--NKEGDLLFSCSKDSSASVWYSLNGERLGTLDG--------HTGTIWSIDVDCFT----   86 (369)
T ss_dssp             EEEEEEECCSSCEEEE--EE--CTTSCEEEEEESSSCEEEEETTTCCEEEEECC--------CSSCEEEEEECTTS----
T ss_pred             cccEEEEEeeceEEEE--EE--cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh--------cCCcEEEEEEcCCC----
Confidence            4445678899885554  45  67888999999999999999999988887765        34578888776543    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG-----VEVNVWDLDKC  194 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~  194 (430)
                          ..+++++.++.+.+|++....        .+..+.  +...+.+++|+|++++|++++.+     +.|++||+...
T Consensus        87 ----~~l~s~~~dg~i~iwd~~~~~--------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           87 ----KYCVTGSADYSIKLWDVSNGQ--------CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             ----SEEEEEETTTEEEEEETTTCC--------EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             ----CEEEEEeCCCeEEEEECCCCc--------EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence                489999999999999976332        444444  67899999999999999999999     99999999764


Q ss_pred             eeeEeeCCCCCCCC--CCcC--CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC
Q 014154          195 EKIWTAKPPPKNSL--GIFT--PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS  270 (430)
Q Consensus       195 ~~~~~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~  270 (430)
                      .....+........  ...+  ...+.+++|  +|++.+|++++.||.|++||+++...++..+..|...|.+++|+|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  230 (369)
T 3zwl_B          153 SATHELTKVSEEPIHKIITHEGLDAATVAGW--STKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL  230 (369)
T ss_dssp             TTTCCEEEECSSCSEEEECCTTCCCEEEEEE--CGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             ccceeecccccceeeeccCCcCccceeEEEE--cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence            32211111000000  0001  137999999  88999999999999999999998555688889999999999999999


Q ss_pred             CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC--------------cEEEEECCCCcee
Q 014154          271 FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS--------------YLRFWDIKTRQLL  336 (430)
Q Consensus       271 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--------------~i~iwd~~~~~~~  336 (430)
                      ++|++++.|+.|++||+++++.+..+..  ...+..++|+|++.++++++.++              .+++||+.+++.+
T Consensus       231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  308 (369)
T 3zwl_B          231 TYFITSSRDTNSFLVDVSTLQVLKKYET--DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI  308 (369)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred             CEEEEecCCceEEEEECCCCceeeeecC--CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence            9999999999999999999999988884  67899999999999999999988              8999999999998


Q ss_pred             eEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          337 SAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       337 ~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ..  +.+| ...|.+++|+|++.+ ++++.||.|++|+...
T Consensus       309 ~~--~~~~-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          309 GR--VQGH-FGPLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             EE--EECC-SSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             hh--eecc-cCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            87  5677 456799999999998 8999999999999865

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.7e-37  Score=299.75  Aligned_cols=329  Identities=12%  Similarity=0.116  Sum_probs=243.8

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCCC---CcceeeeeecCCCC-CceeEEeecCCeEEEecCCCCccccee
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS---SNCVLAASIDDSQN-DPLLAVARKNGLTDILNPLNGDLRVAI   91 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~   91 (430)
                      .+++++.||.|++||+..+     +.+..+.+|..   .+  .++.+  +|+ +++|++++.||.|++||+.+++.+..+
T Consensus       175 ~l~~~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~~~v--~~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPF-----KFSASDRTHHKQGSFV--RDVEF--SPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             EEEEEETTTEEEEEETTTB-----EEEEEECSSSCTTCCE--EEEEE--CSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             EEEEEeCCCcEEEEeCCCc-----ceeeeecccCCCCceE--EEEEE--CCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            6999999999999999987     78888888887   64  45555  678 889999999999999999999887776


Q ss_pred             -eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc-------------------------
Q 014154           92 -SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV-------------------------  145 (430)
Q Consensus        92 -~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~-------------------------  145 (430)
                       ..     ...+...+.++.+.  ..       ..+++++.++.+.+|++.....                         
T Consensus       246 ~~~-----~~~~~~~v~~~~~~--~~-------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (615)
T 1pgu_A          246 EDD-----QEPVQGGIFALSWL--DS-------QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR  311 (615)
T ss_dssp             CBT-----TBCCCSCEEEEEES--SS-------SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTE
T ss_pred             ccc-----ccccCCceEEEEEc--CC-------CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCe
Confidence             30     00233456655555  22       3666666677777776532110                         


Q ss_pred             -cccCCCcceEEeeec-------------------------------------------CCCceEEEEEcCCCCEEEEEe
Q 014154          146 -SAESSCSTVKSWNVC-------------------------------------------ASGTIAFSKVDISEKFSLFGG  181 (430)
Q Consensus       146 -~~~~~~~~i~~~~~~-------------------------------------------~~~~i~~~~~~~~~~~l~~~~  181 (430)
                       ++++.++.+++|+..                                           |...|.+++| +++..|++++
T Consensus       312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~  390 (615)
T 1pgu_A          312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSIS  390 (615)
T ss_dssp             EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEE
T ss_pred             EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEe
Confidence             223344555555432                                           4445555566 4466777777


Q ss_pred             CCCeEEEEECCCCee-----------------------eEeeCCCCCC-CCCCcCCcceeEEEEeecCCCCEEEEEeC-C
Q 014154          182 KGVEVNVWDLDKCEK-----------------------IWTAKPPPKN-SLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D  236 (430)
Q Consensus       182 ~d~~i~~~d~~~~~~-----------------------~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d  236 (430)
                      .|+.|++|++.+++.                       +..+...... ...+.+...+.+++|  +  +.+|++++. |
T Consensus       391 ~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~~~~~~d  466 (615)
T 1pgu_A          391 WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL--S--QNYVAVGLEEG  466 (615)
T ss_dssp             TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE--C--SSEEEEEETTT
T ss_pred             CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE--c--CCEEEEeecCC
Confidence            777777777653221                       0000000000 000112366888888  4  889999999 9


Q ss_pred             CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC-CCCCCeEEEEecC----
Q 014154          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG-KCSGSIRSIARHP----  311 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~----  311 (430)
                      +.|++||+..+......+..|...|++++|+|++++|++++.|+.|++||+.+++++..+.+ | ...|++++|+|    
T Consensus       467 ~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~  545 (615)
T 1pgu_A          467 NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFR-TSKINAISWKPAEKG  545 (615)
T ss_dssp             SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCC-SSCEEEEEECCCC--
T ss_pred             CeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCC-CCceeEEEEcCcccc
Confidence            99999999974421156677889999999999999999999999999999999999999888 6 89999999999    


Q ss_pred             ------CCCeEEEEeCCCcEEEEECCCC-ceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          312 ------TLPIIASCGLDSYLRFWDIKTR-QLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       312 ------~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                            ++++|++++.||.|++||+.++ +++..  +.+| ...|.+++|+|++.+++++.|+.|++|+...
T Consensus       546 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~h-~~~v~~l~~s~~~~l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          546 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA--LNAH-KDGVNNLLWETPSTLVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTTCCEEE--TTSS-TTCEEEEEEEETTEEEEEETTSCEEEEEEC-
T ss_pred             ccccccCCCEEEEEcCCCcEEEEECCCCceechh--hhcC-ccceEEEEEcCCCCeEEecCCceEEEEeeec
Confidence                  9999999999999999999987 66666  6777 5567999999999988899999999998754

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-36  Score=272.93  Aligned_cols=278  Identities=14%  Similarity=0.119  Sum_probs=207.3

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeec-C-CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC------
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERW-G-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG------   85 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~------   85 (430)
                      +..|++|+.||+|++|++..+.   ......+ . +|...|.  ++.|  +|++++|++|+.|++|+|||+...      
T Consensus        24 ~~~las~~~D~~i~lw~~~~~~---~~~~~~~~~~~h~~~v~--~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~~~   96 (330)
T 2hes_X           24 QGILATGSTDRKIKLVSVKYDD---FTLIDVLDETAHKKAIR--SVAW--RPHTSLLAAGSFDSTVSIWAKEESADRTFE   96 (330)
T ss_dssp             TTEEEEEESSSCEEEEECSSSC---CEEEEEECTTCCCSCEE--EEEE--CTTSSEEEEEETTSCEEEEEC-------CC
T ss_pred             CCEEEEEcCCCEEEEEEecCCC---eEEEEEEecCCccCCEE--EEEE--CCCCCEEEEEeCCCcEEEEEcccCcCcccc
Confidence            3489999999999999998741   1234444 3 3888754  4555  778899999999999999998532      


Q ss_pred             -cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc
Q 014154           86 -DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT  164 (430)
Q Consensus        86 -~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~  164 (430)
                       +.+..+.        .|...+.++.+.+..        ..+++++.|+.+++|++.....    ....+..+. .|...
T Consensus        97 ~~~~~~~~--------~h~~~V~~v~~sp~g--------~~las~s~D~~v~iwd~~~~~~----~~~~~~~~~-~h~~~  155 (330)
T 2hes_X           97 MDLLAIIE--------GHENEVKGVAWSNDG--------YYLATCSRDKSVWIWETDESGE----EYECISVLQ-EHSQD  155 (330)
T ss_dssp             CEEEEEEC------------CEEEEEECTTS--------CEEEEEETTSCEEEEECCTTCC----CCEEEEEEC-CCSSC
T ss_pred             ceeEEEEc--------CCCCcEEEEEECCCC--------CEEEEEeCCCEEEEEeccCCCC----CeEEEEEec-cCCCc
Confidence             2223333        345678888876543        4899999999999999842210    111233333 57889


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEeeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEE
Q 014154          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVR  240 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~  240 (430)
                      |.+++|+|++.+|++++.|++|++||+.++  +++..+..|.         ..|.+++|  +|+  +.+|++|+.|++|+
T Consensus       156 v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~l~s~s~D~~v~  224 (330)
T 2hes_X          156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE---------GTVWSSDF--DKTEGVFRLCSGSDDSTVR  224 (330)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS---------SCEEEEEE--CCSSSSCEEEEEETTSCEE
T ss_pred             eEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC---------CcEEEEEe--cCCCCeeEEEEEeCCCeEE
Confidence            999999999999999999999999998766  5667777765         77999999  666  67999999999999


Q ss_pred             EEECCCCC-------cceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe--EEee-eeCCCCC-CeEEEE
Q 014154          241 LYDTSAQR-------RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--LLGC-FIGKCSG-SIRSIA  308 (430)
Q Consensus       241 iwd~~~~~-------~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--~~~~-~~~~~~~-~v~~i~  308 (430)
                      +||+..+.       .....+.. |...|.+++|++++ +|++++.||.|++||..+++  .+.. +.+| .. .|.+++
T Consensus       225 iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h-~~~~v~~v~  302 (330)
T 2hes_X          225 VWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH-GVYEINVVK  302 (330)
T ss_dssp             EEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT-TTSCEEEEE
T ss_pred             EEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc-ccceEEEEE
Confidence            99987531       12334444 88899999999765 89999999999999998874  3333 3566 55 899999


Q ss_pred             ecC--CCCeEEEEeCCCcEEEEECCC
Q 014154          309 RHP--TLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       309 ~~~--~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      |+|  ++.+|++|+.||.|+|||+++
T Consensus       303 ~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          303 WLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EC-----CCEEEEETTSEEEEEEC--
T ss_pred             EecCCCceEEEEecCCCcEEEEEecc
Confidence            999  689999999999999999864

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1e-36  Score=281.83  Aligned_cols=293  Identities=14%  Similarity=0.127  Sum_probs=233.0

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCC-ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQND-PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g-~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  118 (430)
                      ++...+.+|...+.+++  |  +|++ ++|++|+.||.|+|||+.+++....+..      ..+...+.++.+.+...  
T Consensus        64 ~~~~~~~~h~~~v~~~~--~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~--  131 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLE--W--HPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG------MGPGDAITGMKFNQFNT--  131 (383)
T ss_dssp             EEEEEECCCSSCEEEEE--E--CSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC------CSTTCBEEEEEEETTEE--
T ss_pred             ceEEeccCCCCCEEEEE--E--CCCCCCEEEEEcCCCeEEEEeCCCcccceeeec------CCcCCceeEEEeCCCCC--
Confidence            56778888998855554  4  5677 7999999999999999998876665542      23556888888876333  


Q ss_pred             ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec--CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 014154          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK  196 (430)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~  196 (430)
                           ..+++++.++.+.+|++..         ..+..+...  +...|.+++|+|++++|++++.|+.|++||+ +++.
T Consensus       132 -----~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~  196 (383)
T 3ei3_B          132 -----NQLFVSSIRGATTLRDFSG---------SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE  196 (383)
T ss_dssp             -----EEEEEEETTTEEEEEETTS---------CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred             -----CEEEEEeCCCEEEEEECCC---------CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence                 5899999999999999762         244444422  2467999999999999999999999999999 5677


Q ss_pred             eEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCC---cceEEEeecCCCeEEEEecC-CCC
Q 014154          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR---RPVMSFDFRETPIKAVAEEP-DSF  271 (430)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~sp-~~~  271 (430)
                      +..+..+.         ..|.+++|  +|++. +|++++.|+.|++||+++..   .++..+ .|...|.+++|+| ++.
T Consensus       197 ~~~~~~h~---------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~  264 (383)
T 3ei3_B          197 IFKEKLHK---------AKVTHAEF--NPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST  264 (383)
T ss_dssp             EEEEECSS---------SCEEEEEE--CSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSC
T ss_pred             EEEeccCC---------CcEEEEEE--CCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCC
Confidence            77776654         77999999  88888 99999999999999998732   234444 6899999999999 999


Q ss_pred             EEEEEeCCCcEEEEEccCCeEEeeeeCCC----------------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154          272 NIYIGNGSGDLASVDIRTGKLLGCFIGKC----------------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       272 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----------------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  335 (430)
                      +|++++.|+.|++||+++++.+..+.+|.                ...+..++|+|++.+  +++.|+.|++||+.+++.
T Consensus       265 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~  342 (383)
T 3ei3_B          265 KLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL  342 (383)
T ss_dssp             EEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred             EEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence            99999999999999999888766666441                134455777777766  778999999999999999


Q ss_pred             eeEEEeecc-ccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          336 LSAVFLKQH-LNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       336 ~~~~~~~~~-~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +..+  .++ ....+..++|+|++.+ +++ .|+.|++|+...
T Consensus       343 ~~~l--~~~~~~~~~~~~~~s~~g~~l~s~-sd~~i~iw~~~~  382 (383)
T 3ei3_B          343 VHQL--RDPNAAGIISLNKFSPTGDVLASG-MGFNILIWNRED  382 (383)
T ss_dssp             EEEE--CBTTBCSCCCEEEECTTSSEEEEE-ETTEEEEEECC-
T ss_pred             eeee--cCCCCCceEEEEEEecCccEEEEe-cCCcEEEEecCC
Confidence            8884  443 2556677899999999 555 599999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=7e-36  Score=268.25  Aligned_cols=271  Identities=15%  Similarity=0.150  Sum_probs=226.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++|+.||.|++|++..+     +....+.+|...+.  ++.|  +|++++|++|+.||.|++||+.+++.+..+..+
T Consensus        36 ~~l~s~~~dg~i~iw~~~~~-----~~~~~~~~h~~~v~--~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  106 (312)
T 4ery_A           36 EWLASSSADKLIKIWGAYDG-----KFEKTISGHKLGIS--DVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH  106 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEE--EEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEeeCCCeEEEEeCCCc-----ccchhhccCCCceE--EEEE--cCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC
Confidence            46889999999999999887     67778888988854  5555  778899999999999999999999888877654


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                              ...+.++.+.+..        ..+++++.++.+.+|++....        .+..+. .|...|.+++|+|++
T Consensus       107 --------~~~v~~~~~~~~~--------~~l~s~~~d~~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~~~~~  161 (312)
T 4ery_A          107 --------SNYVFCCNFNPQS--------NLIVSGSFDESVRIWDVKTGK--------CLKTLP-AHSDPVSAVHFNRDG  161 (312)
T ss_dssp             --------SSCEEEEEECSSS--------SEEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEECTTS
T ss_pred             --------CCCEEEEEEcCCC--------CEEEEEeCCCcEEEEECCCCE--------EEEEec-CCCCcEEEEEEcCCC
Confidence                    3467777765543        489999999999999975332        344443 567889999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      ++|++++.|+.|++||+.+++.+..+....        ...+..++|  +|++.+|++++.|+.|++||+++++ .+..+
T Consensus       162 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~  230 (312)
T 4ery_A          162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDD--------NPPVSFVKF--SPNGKYILAATLDNTLKLWDYSKGK-CLKTY  230 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCSS--------CCCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTE-EEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCceeeEEeccC--------CCceEEEEE--CCCCCEEEEEcCCCeEEEEECCCCc-EEEEE
Confidence            999999999999999999988877664332        256888999  8999999999999999999999865 47778


Q ss_pred             eecCCCeE---EEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEEEEE
Q 014154          255 DFRETPIK---AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWD  329 (430)
Q Consensus       255 ~~~~~~i~---~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd  329 (430)
                      .+|...+.   .....+++.+|++|+.||.|++||+++++.+..+.+| ...|.+++|+|++.+|++++  .|+.|++|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH-TDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhcc-CCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            87765433   2233467889999999999999999999999999998 89999999999999999997  699999998


Q ss_pred             CC
Q 014154          330 IK  331 (430)
Q Consensus       330 ~~  331 (430)
                      ..
T Consensus       310 ~d  311 (312)
T 4ery_A          310 SD  311 (312)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.9e-36  Score=279.18  Aligned_cols=307  Identities=14%  Similarity=0.160  Sum_probs=239.7

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc------ccceeeccCCCCCCCCCCceEEEEEee
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD------LRVAISNAGDSGAQPEDDGIVGLHLFK  113 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~  113 (430)
                      .....+.+|...|.++++    +|  ++|++|+.||.|++||+.+++      .+..+..        +...+.++.+.+
T Consensus         7 ~~~~~~~~h~~~i~~~~~----~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------h~~~v~~~~~~~   72 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSA----CN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV--------HKSGLHHVDVLQ   72 (397)
T ss_dssp             EEEEESSCSSSCEEEEEE----CS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC--------CTTCEEEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEe----cC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEec--------CCCcEEEEEEec
Confidence            455678889998665555    34  689999999999999998877      4444443        456888888877


Q ss_pred             c----CcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC-----CCceEEEEEc----CCCCE-EEE
Q 014154          114 R----QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-----SGTIAFSKVD----ISEKF-SLF  179 (430)
Q Consensus       114 ~----~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-----~~~i~~~~~~----~~~~~-l~~  179 (430)
                      .    ....     ..+++++.++.+.+|++......   ....+..+. .+     ...|.+++|+    |++++ |++
T Consensus        73 ~~~~~g~~~-----~~l~s~~~dg~i~iw~~~~~~~~---~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  143 (397)
T 1sq9_A           73 AIERDAFEL-----CLVATTSFSGDLLFYRITREDET---KKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVA  143 (397)
T ss_dssp             EEETTTEEE-----EEEEEEETTSCEEEEEEEECTTT---CCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEE
T ss_pred             ccccCCccc-----cEEEEEcCCCCEEEEEccCCccc---ccccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEE
Confidence            6    3000     28899999999999998754310   000044443 34     4889999999    99999 999


Q ss_pred             EeCCCeEEEEECCC------CeeeE-----eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154          180 GGKGVEVNVWDLDK------CEKIW-----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       180 ~~~d~~i~~~d~~~------~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  248 (430)
                      ++.||.|++||+.+      ++.+.     .+...  ......+...|.+++|  +|++ +|++++.|+.|++||+++++
T Consensus       144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~--~~~~-~l~~~~~dg~i~i~d~~~~~  218 (397)
T 1sq9_A          144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT--VESPMTPSQFATSVDI--SERG-LIATGFNNGTVQISELSTLR  218 (397)
T ss_dssp             EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE--ECCSSSSCCCCCEEEE--CTTS-EEEEECTTSEEEEEETTTTE
T ss_pred             EeCCCcEEEEeCCccccccccceeeccCcceeeee--eccccCCCCCceEEEE--CCCc-eEEEEeCCCcEEEEECCCCc
Confidence            99999999999987      55443     33210  0000112367999999  8899 99999999999999999854


Q ss_pred             cceEEEee---c---CCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEeeeeC-------------CCCCCeEE
Q 014154          249 RPVMSFDF---R---ETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCFIG-------------KCSGSIRS  306 (430)
Q Consensus       249 ~~~~~~~~---~---~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~-------------~~~~~v~~  306 (430)
                       ++..+..   |   ...|.+++|+|++++|++++.|   +.|++||+++++.+..+.+             | ...|.+
T Consensus       219 -~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~  296 (397)
T 1sq9_A          219 -PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMS  296 (397)
T ss_dssp             -EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEE
T ss_pred             -eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEEE
Confidence             5788888   8   8999999999999999999999   9999999999999999988             7 899999


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee----cc--------------ccceEEeeeccccc----------
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK----QH--------------LNEVVFDSAFADKE----------  358 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~--------------~~~~v~~~~~s~~g----------  358 (430)
                      ++|+|++.+|++++.||.|++||+.+++.+..+...    +|              ....|.+++|+|+|          
T Consensus       297 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~  376 (397)
T 1sq9_A          297 LSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN  376 (397)
T ss_dssp             EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTS
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccccccc
Confidence            999999999999999999999999999998885311    33              04557999999998          


Q ss_pred             cc-cccCCCCceEecCCCC
Q 014154          359 VA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       359 ~~-~~~~~d~~i~~~~~~~  376 (430)
                      .+ ++++.|+.|++|+...
T Consensus       377 ~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          377 ESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             CEEEEEETTTEEEEEEEEC
T ss_pred             ceEEEecCCCcEEEEEcCC
Confidence            45 8999999999998754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-36  Score=307.48  Aligned_cols=152  Identities=12%  Similarity=0.151  Sum_probs=126.9

Q ss_pred             EEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc---eEEEe-------ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154          218 SAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---VMSFD-------FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (430)
Q Consensus       218 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~-------~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~  287 (430)
                      .++|  +|++++|++|+.|++|++||+.++...   .....       +|...|.+++|+|++++|++|+.||+|+|||+
T Consensus       440 sv~~--spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~  517 (902)
T 2oaj_A          440 QKLP--AEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKY  517 (902)
T ss_dssp             CCCC--CSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             cccc--cccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEe
Confidence            3444  678999999999999999999875321   12221       78889999999999999999999999999999


Q ss_pred             cCC---------------------------------------------eEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC
Q 014154          288 RTG---------------------------------------------KLLGCFIGKCSGSIRSIARHPTLPIIASCGLD  322 (430)
Q Consensus       288 ~~~---------------------------------------------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d  322 (430)
                      .++                                             +++..+.+| .+.|++++|+|+| +||+|+.|
T Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h-~~~V~svafSpdG-~lAsgs~D  595 (902)
T 2oaj_A          518 EVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN-KGKTSAINNSNIG-FVGIAYAA  595 (902)
T ss_dssp             EECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC-SCSEEEEEECBTS-EEEEEETT
T ss_pred             cCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC-CCcEEEEEecCCc-EEEEEeCC
Confidence            866                                             346778887 8999999999999 99999999


Q ss_pred             CcEEEEECCCCceeeEEEe---e-ccccceEEeeecc-----ccc---cc-cccCCCCceEecCC
Q 014154          323 SYLRFWDIKTRQLLSAVFL---K-QHLNEVVFDSAFA-----DKE---VA-NAAADAPMLEIQNG  374 (430)
Q Consensus       323 g~i~iwd~~~~~~~~~~~~---~-~~~~~~v~~~~~s-----~~g---~~-~~~~~d~~i~~~~~  374 (430)
                      ++|+|||++++..+....+   . +| ...|++++|+     |||   .+ ++++.|++|++|+.
T Consensus       596 ~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          596 GSLMLIDRRGPAIIYMENIREISGAQ-SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             SEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             CcEEEEECCCCeEEEEeehhHhcccc-ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            9999999988877653222   2 66 5568999999     885   56 99999999999998

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.4e-36  Score=279.53  Aligned_cols=302  Identities=10%  Similarity=0.031  Sum_probs=235.8

Q ss_pred             cCCCCCCCcceeeecCCCceEEEEccCCCC-CcceeeeecCCCCCCcceeeeeecCCCCC---ceeEEeecCCeEEEecC
Q 014154            7 LECPGCPPLRALTFDSLGLIKVIEARGEHG-GVPKVVERWGDPHSSNCVLAASIDDSQND---PLLAVARKNGLTDILNP   82 (430)
Q Consensus         7 ~~~~~~~~~~l~t~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~g---~~l~~g~~dg~i~iwd~   82 (430)
                      +.+....+..+++|+.||.|++|++..+.. ...+.+..+.+|...+..++++.+..++|   ++|++++.||.|++||+
T Consensus        19 i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~   98 (397)
T 1sq9_A           19 IFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRI   98 (397)
T ss_dssp             EEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEE
T ss_pred             eEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEc
Confidence            333444447899999999999999998610 11125667778988866666655312237   89999999999999999


Q ss_pred             CCCcc-----cceeeccCCCCCCCC--CCceEEEEEe----ecCcccccccCce-EEEEccCCeeEEEEeee------cC
Q 014154           83 LNGDL-----RVAISNAGDSGAQPE--DDGIVGLHLF----KRQREESSSRSRT-LLTCTTKGKASMRSIEV------TK  144 (430)
Q Consensus        83 ~~~~~-----~~~~~~~~~~~~~~~--~~~i~~~~~~----~~~~~~~~~~~~~-~~~~~~~g~~~v~~~~~------~~  144 (430)
                      .+++.     +..+..+.     .+  ...+.++.+.    +..        .. +++++.++.+.+|++..      ..
T Consensus        99 ~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~--------~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           99 TREDETKKVIFEKLDLLD-----SDMKKHSFWALKWGASNDRLL--------SHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EECTTTCCEEEEEECCSC-----TTGGGSCEEEEEEECCC------------CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             cCCcccccccceeecccc-----cccCCCcEEEEEEeeccCCCC--------ceEEEEEeCCCcEEEEeCCccccccccc
Confidence            88876     55554431     01  3578888887    433        37 89999999999999986      32


Q ss_pred             ccccCCCcceEEee------ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC---CCCCCCCCcCCcc
Q 014154          145 VSAESSCSTVKSWN------VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP---PPKNSLGIFTPTW  215 (430)
Q Consensus       145 ~~~~~~~~~i~~~~------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~  215 (430)
                      .....   ....+.      ..+...|.+++|+|++ +|++++.|+.|++||+++++.+..+..   |..      ....
T Consensus       166 ~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~------~~~~  235 (397)
T 1sq9_A          166 TLNWS---PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN------NSNS  235 (397)
T ss_dssp             TTCCC---CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C------CCCC
T ss_pred             eeecc---CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccc------cCCc
Confidence            11100   000222      3467889999999999 999999999999999999998888776   400      0167


Q ss_pred             eeEEEEeecCCCCEEEEEeCC---CcEEEEECCCCCcceEEEee-------------cCCCeEEEEecCCCCEEEEEeCC
Q 014154          216 FTSAAFLSIDDHRKFVAGTND---HQVRLYDTSAQRRPVMSFDF-------------RETPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       216 v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~-------------~~~~i~~~~~sp~~~~l~~~~~d  279 (430)
                      |.+++|  +|++.+|++++.|   +.|++||+++++ ++..+..             |...|.+++|+|++++|++++.|
T Consensus       236 i~~i~~--~~~~~~l~~~~~d~~~g~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  312 (397)
T 1sq9_A          236 IRSVKF--SPQGSLLAIAHDSNSFGCITLYETEFGE-RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  312 (397)
T ss_dssp             EEEEEE--CSSTTEEEEEEEETTEEEEEEEETTTCC-EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             cceEEE--CCCCCEEEEEecCCCCceEEEEECCCCc-ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence            999999  8999999999999   999999999865 5788888             99999999999999999999999


Q ss_pred             CcEEEEEccCCeEEeeee------CC--------------CCCCeEEEEecCCC----------CeEEEEeCCCcEEEEE
Q 014154          280 GDLASVDIRTGKLLGCFI------GK--------------CSGSIRSIARHPTL----------PIIASCGLDSYLRFWD  329 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~------~~--------------~~~~v~~i~~~~~~----------~~l~s~~~dg~i~iwd  329 (430)
                      +.|++||+++++++..+.      +|              |...|++++|+|++          .+|++++.||.|++|+
T Consensus       313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            999999999999999998      54              26899999999998          7999999999999999


Q ss_pred             CCCCc
Q 014154          330 IKTRQ  334 (430)
Q Consensus       330 ~~~~~  334 (430)
                      +.+|+
T Consensus       393 ~~~g~  397 (397)
T 1sq9_A          393 EAGGK  397 (397)
T ss_dssp             EEC--
T ss_pred             cCCCC
Confidence            98763

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.8e-37  Score=283.03  Aligned_cols=291  Identities=9%  Similarity=0.012  Sum_probs=212.8

Q ss_pred             CCcceeeeeecCCCCCceeEEeecC-------CeEEEecCCCCcccc--eeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           50 SSNCVLAASIDDSQNDPLLAVARKN-------GLTDILNPLNGDLRV--AISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        50 ~~~~~~~~~~~~~p~g~~l~~g~~d-------g~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      -+|++++|    +|||++|++|+.+       +.|++|++..+....  .+..+....+.++.+.+.++.+-.       
T Consensus        15 ~PV~sv~f----s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~-------   83 (365)
T 4h5i_A           15 YPAYGAKF----LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASK-------   83 (365)
T ss_dssp             SCEEEEEE----EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEET-------
T ss_pred             CCEEEEEE----eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCC-------
Confidence            35555554    6688899998753       359999987554321  222222223444555665554321       


Q ss_pred             ccCceEEEE-----------ccCCeeEEEEeeecCccccCCCcceEEeee-------cCCCceEEEEEcCCCCEEEEEe-
Q 014154          121 SRSRTLLTC-----------TTKGKASMRSIEVTKVSAESSCSTVKSWNV-------CASGTIAFSKVDISEKFSLFGG-  181 (430)
Q Consensus       121 ~~~~~~~~~-----------~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-------~~~~~i~~~~~~~~~~~l~~~~-  181 (430)
                         ..++++           ..++.+++|.+.....       .+..+..       .+...+.+++|+|+|+++++++ 
T Consensus        84 ---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~  153 (365)
T 4h5i_A           84 ---GIILVGCNENSTKITQGKGNKHLRKFKYDKVND-------QLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASS  153 (365)
T ss_dssp             ---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTT-------EEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred             ---CEEEEEECCCccEEEEecCCCcEEEEEecCCCc-------eEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC
Confidence               234433           3455667776543221       2222111       1224578999999999987554 


Q ss_pred             -CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce-EEEeecCC
Q 014154          182 -KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV-MSFDFRET  259 (430)
Q Consensus       182 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~  259 (430)
                       .|++|++||+++++.+..+..+          ..|.+++|  +|++++|++++.+ .+.+|+..++.... .....|..
T Consensus       154 ~~d~~i~iwd~~~~~~~~~~~~~----------~~V~~v~f--spdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~  220 (365)
T 4h5i_A          154 KVPAIMRIIDPSDLTEKFEIETR----------GEVKDLHF--STDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNW  220 (365)
T ss_dssp             CSSCEEEEEETTTTEEEEEEECS----------SCCCEEEE--CTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTE
T ss_pred             CCCCEEEEeECCCCcEEEEeCCC----------CceEEEEE--ccCCceEEeccce-eEEEEEeccCcceeeeecCCCCC
Confidence             6899999999999998877532          56999999  8999999998854 56677766655432 23456788


Q ss_pred             CeEEEEecCCCCEEEEEeCCC----cEEEEEccCCeE----EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          260 PIKAVAEEPDSFNIYIGNGSG----DLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       260 ~i~~~~~sp~~~~l~~~~~d~----~i~iwd~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      .|.+++|+|+++++++++.|+    .+++||+.....    ...+.+| ...|++++|+|+|++||+|+.|++|+|||++
T Consensus       221 ~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~  299 (365)
T 4h5i_A          221 SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNR-FKGITSMDVDMKGELAVLASNDNSIALVKLK  299 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESS-CSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCC-CCCeEeEEECCCCCceEEEcCCCEEEEEECC
Confidence            899999999999999999887    688999887654    3456777 8899999999999999999999999999999


Q ss_pred             CCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          332 TRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      +++++..+ +.+| ...|++++|+|||++ ++++.|++|+||+.+..
T Consensus       300 ~~~~~~~~-~~gH-~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          300 DLSMSKIF-KQAH-SFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TTEEEEEE-TTSS-SSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CCcEEEEe-cCcc-cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99998875 5788 556799999999998 99999999999998753

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=2.1e-36  Score=320.06  Aligned_cols=330  Identities=14%  Similarity=0.246  Sum_probs=252.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++|+.||+|++||+.++     +.+..+.+|...+.+  +.|  +|+|++|++|+.||.|+|||+.+++.+..+..+
T Consensus       628 ~~l~s~~~d~~i~vw~~~~~-----~~~~~~~~h~~~v~~--~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~  698 (1249)
T 3sfz_A          628 QRIASCGADKTLQVFKAETG-----EKLLDIKAHEDEVLC--CAF--SSDDSYIATCSADKKVKIWDSATGKLVHTYDEH  698 (1249)
T ss_dssp             SEEEEEETTSCEEEEETTTC-----CEEEEECCCSSCEEE--EEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEeCCCeEEEEECCCC-----CEEEEeccCCCCEEE--EEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence            46889999999999999997     778888999998554  444  678889999999999999999999988887763


Q ss_pred             CCCCCCCCCCceEEEEEeec--------------------Ccccc----------------cccCceEEEEccCCeeEEE
Q 014154           95 GDSGAQPEDDGIVGLHLFKR--------------------QREES----------------SSRSRTLLTCTTKGKASMR  138 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~--------------------~~~~~----------------~~~~~~~~~~~~~g~~~v~  138 (430)
                      .        ..+.++.+.+.                    .....                ...+..+++++.+|.+.+|
T Consensus       699 ~--------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vw  770 (1249)
T 3sfz_A          699 S--------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW  770 (1249)
T ss_dssp             S--------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEE
T ss_pred             C--------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEE
Confidence            2        23333333322                    11000                0011244445555555555


Q ss_pred             EeeecCc-----------------------------------cccCCCcceEEeee-----------cCCCceEEEEEcC
Q 014154          139 SIEVTKV-----------------------------------SAESSCSTVKSWNV-----------CASGTIAFSKVDI  172 (430)
Q Consensus       139 ~~~~~~~-----------------------------------~~~~~~~~i~~~~~-----------~~~~~i~~~~~~~  172 (430)
                      ++.....                                   .....++.+.+|+.           .+...|.+++|+|
T Consensus       771 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp  850 (1249)
T 3sfz_A          771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSP  850 (1249)
T ss_dssp             EGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECS
T ss_pred             eCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcC
Confidence            4321100                                   00011233444433           2345678899999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc---
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR---  249 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---  249 (430)
                      ++.++++++.++.|++||+.++..+..+..|.         ..|.+++|  +|++.+|++++.|+.|++||+.....   
T Consensus       851 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~--spdg~~l~s~s~dg~v~vw~~~~~~~~~~  919 (1249)
T 3sfz_A          851 YDHLAVIALSQYCVELWNIDSRLKVADCRGHL---------SWVHGVMF--SPDGSSFLTASDDQTIRVWETKKVCKNSA  919 (1249)
T ss_dssp             STTEEEEECSSSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEEHHHHHSCCS
T ss_pred             CCCEEEEEeCCCeEEEEEcCCCceeeecCCCc---------cceEEEEE--CCCCCEEEEEeCCCeEEEEEccccceeee
Confidence            99999999999999999999999988888765         78999999  89999999999999999999653100   


Q ss_pred             -------------------------ceEE--------EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee
Q 014154          250 -------------------------PVMS--------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (430)
Q Consensus       250 -------------------------~~~~--------~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  296 (430)
                                               ....        ...+...+.+++|+|+++++++|+.+|.|++||+.+++.+..+
T Consensus       920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~  999 (1249)
T 3sfz_A          920 IVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG  999 (1249)
T ss_dssp             SSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC
T ss_pred             ecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec
Confidence                                     0011        1123467999999999999999999999999999999999999


Q ss_pred             eCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       297 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      .+| ...|++++|+|++++|++++.||.|++||+.+++...   ..+| ...+.+++|+|++.+++++.|+.|++|+...
T Consensus      1000 ~~h-~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~---~~~~-~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A         1000 VGH-KKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---LQAH-QETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp             CCC-SSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC---CBCC-SSCEEEEEECSSSEEEEEESSSEEEEEETTT
T ss_pred             ccC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE---EecC-CCcEEEEEEcCCCcEEEEECCCcEEEEECCC
Confidence            998 8999999999999999999999999999999988765   3455 4567999999999999999999999999865


Q ss_pred             C
Q 014154          377 T  377 (430)
Q Consensus       377 ~  377 (430)
                      .
T Consensus      1075 ~ 1075 (1249)
T 3sfz_A         1075 G 1075 (1249)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2e-36  Score=283.31  Aligned_cols=274  Identities=14%  Similarity=0.134  Sum_probs=225.1

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      +|+|++|++|+.||.|++||+.+++....+..          ..+..+.++....       ..+++++.++.+.+|++.
T Consensus        65 s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~----------~~~~~~~~~~~~~-------~~l~~~~~dg~i~iwd~~  127 (420)
T 3vl1_A           65 EKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR----------ADYTAVDTAKLQM-------RRFILGTTEGDIKVLDSN  127 (420)
T ss_dssp             EEEETTEEEEEETTEEEEEECCSEETTTTSCS----------CCEEEEEEECSSS-------CEEEEEETTSCEEEECTT
T ss_pred             eecCCeEEEEEcCCcEEEEEecccceeeEEec----------CCceEEEEEecCC-------CEEEEEECCCCEEEEeCC
Confidence            67888999999999999999988776655543          2555566666554       689999999999999865


Q ss_pred             ecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEE
Q 014154          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAF  221 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  221 (430)
                      ...        .+..+ ..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+..|.         ..|.+++|
T Consensus       128 ~~~--------~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~---------~~v~~~~~  189 (420)
T 3vl1_A          128 FNL--------QREID-QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR---------ATVTDIAI  189 (420)
T ss_dssp             SCE--------EEEET-TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS---------SCEEEEEE
T ss_pred             Ccc--------eeeec-ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC---------CcEEEEEE
Confidence            321        22222 3678999999999999999999999999999999998888877654         77999999


Q ss_pred             eecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec---C---------------------CCeEEEEecCCCCEEEEEe
Q 014154          222 LSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR---E---------------------TPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       222 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~---------------------~~i~~~~~sp~~~~l~~~~  277 (430)
                        +|++.+|++++.|+.|++||+++++ .+..+..|   .                     ..+.+++|+|++++|++|+
T Consensus       190 --~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (420)
T 3vl1_A          190 --IDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH  266 (420)
T ss_dssp             --ETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred             --cCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc
Confidence              8899999999999999999999865 46666642   3                     3444555688999999999


Q ss_pred             CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECCCCce-eeEEEeeccccceEEeeecc
Q 014154          278 GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFA  355 (430)
Q Consensus       278 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s  355 (430)
                      .||.|++||+++++.+..+...|...|.+++|+|++. +|++++.||.|++||+++++. +..  +.+|....+.++.|.
T Consensus       267 ~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~--~~~~~~~~v~~~~~~  344 (420)
T 3vl1_A          267 VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGE--FLINEGTPINNVYFA  344 (420)
T ss_dssp             TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE--EEESTTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhh--hhccCCCCceEEEeC
Confidence            9999999999999988887764488999999999998 999999999999999998755 555  445446677888665


Q ss_pred             ccccc-cccCCCCceEecCCCC
Q 014154          356 DKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       356 ~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                       ++.+ ++++.|+.|++|+...
T Consensus       345 -~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          345 -AGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             -TTEEEEEETTTEEEEEEEECC
T ss_pred             -CCCEEEEecCCccEEEEeccC
Confidence             5655 9999999999999766

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-35  Score=295.73  Aligned_cols=296  Identities=10%  Similarity=0.141  Sum_probs=233.1

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc-----cceeeccCCCCCCCCCCceEEEEEeec
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL-----RVAISNAGDSGAQPEDDGIVGLHLFKR  114 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~  114 (430)
                      ++...+.+|.+.|.+++++.+   ++++|++|+.||+|+||++.+...     ...+.        .|...+.++.+.+.
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~---~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~--------~h~~~v~~v~~s~~  441 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPID---NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT--------GHSHFVEDVVLSSD  441 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTT---CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE--------CCSSCEEEEEECTT
T ss_pred             chhhhcccCCceeEEEEecCC---CCCEEEEEeCCCcEEEEEccCCCcccccccceec--------CCCCcEEEEEECCC
Confidence            344567889999777766542   346899999999999999976432     22333        34567887777654


Q ss_pred             CcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 014154          115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC  194 (430)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~  194 (430)
                      .        ..+++++.|+.++||++....        .++.+. .|...|.+++|+|++++|++++.|++|++||+...
T Consensus       442 g--------~~l~sgs~Dg~v~vwd~~~~~--------~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~  504 (694)
T 3dm0_A          442 G--------QFALSGSWDGELRLWDLAAGV--------STRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE  504 (694)
T ss_dssp             S--------SEEEEEETTSEEEEEETTTTE--------EEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred             C--------CEEEEEeCCCcEEEEECCCCc--------ceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence            4        489999999999999975332        344443 68899999999999999999999999999998654


Q ss_pred             eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC--CEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCE
Q 014154          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN  272 (430)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~  272 (430)
                      .........      ..|...|.+++|  +|++  ..|++++.|+.|++||+++.+ ....+.+|...|++++|+|++++
T Consensus       505 ~~~~~~~~~------~~h~~~v~~~~~--~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~  575 (694)
T 3dm0_A          505 CKYTISEGG------EGHRDWVSCVRF--SPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSL  575 (694)
T ss_dssp             EEEEECSST------TSCSSCEEEEEE--CSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSE
T ss_pred             cceeeccCC------CCCCCcEEEEEE--eCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCE
Confidence            433222211      123478999999  6665  689999999999999999855 57888999999999999999999


Q ss_pred             EEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc--------
Q 014154          273 IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH--------  344 (430)
Q Consensus       273 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------  344 (430)
                      |++|+.|+.|++||+++++.+..+..  ...|.+++|+|++.+|++++ |+.|+|||+++++.+..+.....        
T Consensus       576 l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  652 (694)
T 3dm0_A          576 CASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADN  652 (694)
T ss_dssp             EEEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------
T ss_pred             EEEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccc
Confidence            99999999999999999999888876  46899999999998887765 56699999999988876421100        


Q ss_pred             --------ccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          345 --------LNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       345 --------~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                              ....+++++|+|+|++ ++++.||.|++|+..
T Consensus       653 ~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             --------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence                    0012678999999999 999999999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.3e-35  Score=266.90  Aligned_cols=277  Identities=11%  Similarity=0.111  Sum_probs=219.6

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|+||+.||+|+|||+.............+.+|...|..  +.|  +|+|++|++|+.|+.|++|+.............
T Consensus        52 ~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~--~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~  127 (340)
T 4aow_A           52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD--VVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGH  127 (340)
T ss_dssp             TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEE--EEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEE--EEE--CCCCCEEEEEcccccceEEeecccceeeeecCC
Confidence            4688999999999999987643334456778899988554  445  678999999999999999999877665554432


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-  173 (430)
                              ...+....+ ....       ..+++++.++.+.+|++....        ........+...+..++|+++ 
T Consensus       128 --------~~~~~~~~~-~~~~-------~~l~s~s~d~~~~~~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~  183 (340)
T 4aow_A          128 --------TKDVLSVAF-SSDN-------RQIVSGSRDKTIKLWNTLGVC--------KYTVQDESHSEWVSCVRFSPNS  183 (340)
T ss_dssp             --------SSCEEEEEE-CTTS-------SCEEEEETTSCEEEECTTSCE--------EEEECSSSCSSCEEEEEECSCS
T ss_pred             --------CCceeEEEE-eecC-------ccceeecCCCeEEEEEeCCCc--------eEEEEeccccCcccceEEccCC
Confidence                    123433333 3332       589999999999999864321        222333456788999999875 


Q ss_pred             -CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154          174 -EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       174 -~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  252 (430)
                       ..++++++.|+.|++||+.+++.+..+..+.         ..|++++|  +|++++|++|+.|+.|++||+++.. ++.
T Consensus       184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~---------~~v~~~~~--s~~~~~l~s~s~Dg~i~iwd~~~~~-~~~  251 (340)
T 4aow_A          184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT---------GYLNTVTV--SPDGSLCASGGKDGQAMLWDLNEGK-HLY  251 (340)
T ss_dssp             SSCEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTTE-EEE
T ss_pred             CCcEEEEEcCCCEEEEEECCCCceeeEecCCC---------CcEEEEEE--CCCCCEEEEEeCCCeEEEEEeccCc-eee
Confidence             4678899999999999999999998888765         77999999  8999999999999999999999855 466


Q ss_pred             EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee---------CCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI---------GKCSGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                      .+..+ ..|.++.|+|++.+ ++++.|+.|++||++++..+..+.         +| ...|++++|+|++++|++|+.||
T Consensus       252 ~~~~~-~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg  328 (340)
T 4aow_A          252 TLDGG-DIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDN  328 (340)
T ss_dssp             EEECS-SCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTS
T ss_pred             eecCC-ceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCC
Confidence            66654 68999999998754 556679999999999988776654         34 78999999999999999999999


Q ss_pred             cEEEEECCCCc
Q 014154          324 YLRFWDIKTRQ  334 (430)
Q Consensus       324 ~i~iwd~~~~~  334 (430)
                      .|+|||+++|.
T Consensus       329 ~v~iW~~~tGt  339 (340)
T 4aow_A          329 LVRVWQVTIGT  339 (340)
T ss_dssp             CEEEEEEEC--
T ss_pred             EEEEEeCCCcC
Confidence            99999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-35  Score=262.65  Aligned_cols=288  Identities=13%  Similarity=0.189  Sum_probs=239.7

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      ++...+.+|...|.++++ .    ++++|++|+.||.|++||+.+++....+..+        ...+.++.+.+..    
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~----~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~--------~~~v~~~~~~~~~----   71 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-V----DDSKVASVSRDGTVRLWSKDDQWLGTVVYTG--------QGFLNSVCYDSEK----   71 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-E----ETTEEEEEETTSEEEEEEESSSEEEEEEEEC--------SSCEEEEEEETTT----
T ss_pred             HHHHHhhCCCCCcEEEEe-c----CCCEEEEEEcCCcEEEEECCCCEEEEEeecC--------CccEEEEEECCCC----
Confidence            677889999999777666 3    5678999999999999999888777766653        3578878776644    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                          ..+++++.++.+.+|++.....     ...+..+. .|...|.+++|  ++++|++++.|+.|++||  .+.....
T Consensus        72 ----~~l~~~~~dg~i~~~~~~~~~~-----~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~  137 (313)
T 3odt_A           72 ----ELLLFGGKDTMINGVPLFATSG-----EDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYN  137 (313)
T ss_dssp             ----TEEEEEETTSCEEEEETTCCTT-----SCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred             ----CEEEEecCCCeEEEEEeeecCC-----CCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence                4899999999999999864321     12333333 57789999999  578999999999999999  5666666


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeC
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~  278 (430)
                      +..+.         ..+.++.|. ++++.+|++++.|+.|++||..   .....+.. |...+.+++|+|++. +++++.
T Consensus       138 ~~~~~---------~~v~~~~~~-~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~  203 (313)
T 3odt_A          138 LQAHN---------ASVWDAKVV-SFSENKFLTASADKTIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSN  203 (313)
T ss_dssp             EECCS---------SCEEEEEEE-ETTTTEEEEEETTSCEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEET
T ss_pred             cccCC---------CceeEEEEc-cCCCCEEEEEECCCCEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccC
Confidence            66654         678999995 3488999999999999999943   34666776 889999999999998 999999


Q ss_pred             CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      |+.|++||+++++++..+.+| ...|++++|+|++ .|++++.||.|++||+.+++.+..  +..| ...+.+++|+|++
T Consensus       204 dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~--~~~~-~~~i~~~~~~~~~  278 (313)
T 3odt_A          204 DGLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV--ITLP-AISIWSVDCMSNG  278 (313)
T ss_dssp             TSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEE--EECS-SSCEEEEEECTTS
T ss_pred             CCeEEEEECCchhhhhhhhcC-CceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEE--Eecc-CceEEEEEEccCC
Confidence            999999999999999999998 8999999999999 689999999999999999999887  4556 4457999999999


Q ss_pred             cccccCCCCceEecCCCCC
Q 014154          359 VANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       359 ~~~~~~~d~~i~~~~~~~~  377 (430)
                      .+++++.|+.|++|+....
T Consensus       279 ~~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          279 DIIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             CEEEEETTSCEEEEESCGG
T ss_pred             CEEEEeCCCcEEEEeCCCC
Confidence            9988999999999998763

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.6e-36  Score=321.01  Aligned_cols=337  Identities=16%  Similarity=0.184  Sum_probs=267.6

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ...+++|+.||.|++||+..+     +.+..+.+|...+.  ++.+  +|+|++|++|+.||.|++||+.+++....+..
T Consensus       713 ~~~l~sg~~d~~v~vwd~~~~-----~~~~~~~~h~~~v~--~~~~--sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~  783 (1249)
T 3sfz_A          713 HLLLATGSNDFFLKLWDLNQK-----ECRNTMFGHTNSVN--HCRF--SPDDELLASCSADGTLRLWDVRSANERKSINV  783 (1249)
T ss_dssp             CCEEEEEETTSCEEEEETTSS-----SEEEEECCCSSCEE--EEEE--CSSTTEEEEEESSSEEEEEEGGGTEEEEEEEC
T ss_pred             ceEEEEEeCCCeEEEEECCCc-----chhheecCCCCCEE--EEEE--ecCCCEEEEEECCCeEEEEeCCCCcccceecc
Confidence            357889999999999999997     77888889998855  4455  67888999999999999999988766555432


Q ss_pred             -----------------cCCCCCCCCCCceE-----EEEEeecCcccc-----------------cccCceEEEEccCCe
Q 014154           94 -----------------AGDSGAQPEDDGIV-----GLHLFKRQREES-----------------SSRSRTLLTCTTKGK  134 (430)
Q Consensus        94 -----------------~~~~~~~~~~~~i~-----~~~~~~~~~~~~-----------------~~~~~~~~~~~~~g~  134 (430)
                                       +....+++....+.     .+.+|+......                 ...+..+++++.++.
T Consensus       784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~  863 (1249)
T 3sfz_A          784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC  863 (1249)
T ss_dssp             CCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred             cccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence                             12222333222221     111221110000                 011247788888888


Q ss_pred             eEEEEee-------------------ecCc----cccCCCcceEEeeecC------------------------------
Q 014154          135 ASMRSIE-------------------VTKV----SAESSCSTVKSWNVCA------------------------------  161 (430)
Q Consensus       135 ~~v~~~~-------------------~~~~----~~~~~~~~i~~~~~~~------------------------------  161 (430)
                      +.+|++.                   ++++    ++++.|+.+++|+...                              
T Consensus       864 v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  943 (1249)
T 3sfz_A          864 VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNI  943 (1249)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESS
T ss_pred             EEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCC
Confidence            8888753                   2222    5667788899998431                              


Q ss_pred             -----------------CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154          162 -----------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (430)
Q Consensus       162 -----------------~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  224 (430)
                                       ...+.+++|+|+++++++|+.+|.|++||+.++.....+..|.         ..|.+++|  +
T Consensus       944 ~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~---------~~v~~l~~--s 1012 (1249)
T 3sfz_A          944 RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK---------KAVRHIQF--T 1012 (1249)
T ss_dssp             SSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS---------SCCCCEEE--C
T ss_pred             cceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC---------CceEEEEE--C
Confidence                             2458899999999999999999999999999988887777654         67999999  8


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154          225 DDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI  304 (430)
Q Consensus       225 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v  304 (430)
                      |++.+|++++.||.|++||+.++.  ...+..|...|.+++|+|++ .+++++.|+.|++||+.+++.+..+.+| ...|
T Consensus      1013 ~dg~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v 1088 (1249)
T 3sfz_A         1013 ADGKTLISSSEDSVIQVWNWQTGD--YVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCH-QGTV 1088 (1249)
T ss_dssp             SSSSCEEEECSSSBEEEEETTTTE--EECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECC-SSCC
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCc--eEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEccc-CCcE
Confidence            999999999999999999999865  34566788999999999976 6788999999999999999999999998 8999


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      .+++|+|++.+|++++.|+.|++||+.+++.+..  +.+| ...|.+++|+|+|.+ ++++.||.|++|+....
T Consensus      1089 ~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~--l~~h-~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A         1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE--LKGH-NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp             CCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC--CCCC-SSCEEEEEECSSSSEEEEEETTSCCCEEESSSS
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCcceeee--eccC-CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999999999999999999999999999998887  6677 456799999999998 99999999999998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=285.30  Aligned_cols=310  Identities=14%  Similarity=0.163  Sum_probs=237.1

Q ss_pred             EEEccCCCCCcceeeeec-CCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCC---CcccceeeccCCCCCCCC
Q 014154           28 VIEARGEHGGVPKVVERW-GDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLN---GDLRVAISNAGDSGAQPE  102 (430)
Q Consensus        28 vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~  102 (430)
                      .|+...      +++..+ .+|...|..+++    +| ++++|++|+.||+|+|||+.+   +........      ..+
T Consensus        47 ~w~~~g------~~~~~~~~~h~~~V~~~~~----s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~------~~h  110 (437)
T 3gre_A           47 MGNLRG------KLIATLMENEPNSITSSAV----SPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT------YDC  110 (437)
T ss_dssp             GGGCCC------CEEEEECTTTTSCEEEEEE----ECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE------EEC
T ss_pred             cccccc------eEEeeeccCCCCceEEEEE----CCCCCCEEEEecCCceEEEeECcccccCcccceeee------ccC
Confidence            488665      677778 788888665555    56 778999999999999999876   332211110      024


Q ss_pred             CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeec---CccccCCCcceEEeeec---CCCceEEEE--EcCCC
Q 014154          103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVT---KVSAESSCSTVKSWNVC---ASGTIAFSK--VDISE  174 (430)
Q Consensus       103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~~~i~~~~~~---~~~~i~~~~--~~~~~  174 (430)
                      ...+.++.+.+..        ..+++++.+|.+.+|++...   ..........++.+...   +...+.++.  +++++
T Consensus       111 ~~~v~~~~~~~~~--------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  182 (437)
T 3gre_A          111 SSTVTQITMIPNF--------DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK  182 (437)
T ss_dssp             SSCEEEEEECTTS--------SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred             CCCEEEEEEeCCC--------CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence            5688888887643        48999999999999998632   11000001122222222   456677777  56889


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      .+|++++.|+.|++||+++++.+..+..+.       |...|++++|  +|++.+|++|+.||.|++||++++. ++..+
T Consensus       183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------h~~~v~~~~~--s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~  252 (437)
T 3gre_A          183 SLLVALTNLSRVIIFDIRTLERLQIIENSP-------RHGAVSSICI--DEECCVLILGTTRGIIDIWDIRFNV-LIRSW  252 (437)
T ss_dssp             EEEEEEETTSEEEEEETTTCCEEEEEECCG-------GGCCEEEEEE--CTTSCEEEEEETTSCEEEEETTTTE-EEEEE
T ss_pred             CEEEEEeCCCeEEEEeCCCCeeeEEEccCC-------CCCceEEEEE--CCCCCEEEEEcCCCeEEEEEcCCcc-EEEEE
Confidence            999999999999999999999988887621       2267999999  8999999999999999999999854 56666


Q ss_pred             e-ecCCCeEEEEec----CCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC-------------------------CCCCe
Q 014154          255 D-FRETPIKAVAEE----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-------------------------CSGSI  304 (430)
Q Consensus       255 ~-~~~~~i~~~~~s----p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-------------------------~~~~v  304 (430)
                      . .|...|.+++|+    |++.+|++|+.|+.|++||+++++++..+.+|                         |...|
T Consensus       253 ~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v  332 (437)
T 3gre_A          253 SFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNAL  332 (437)
T ss_dssp             BCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGG
T ss_pred             ecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCce
Confidence            5 677899999555    56889999999999999999999988888754                         35568


Q ss_pred             EEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee-----------------------------------ccccceE
Q 014154          305 RSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK-----------------------------------QHLNEVV  349 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------------------------~~~~~~v  349 (430)
                      ++++|+ ++.+|++|+.|+.|++||+.+++.+..+.-.                                   .| ...|
T Consensus       333 ~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~I  410 (437)
T 3gre_A          333 STISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH-HDII  410 (437)
T ss_dssp             CCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC--------------CCCE
T ss_pred             EEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccc-ccce
Confidence            889999 7789999999999999999998877764210                                   14 5567


Q ss_pred             Eeeecccc--ccc-cccCCCCceEecC
Q 014154          350 FDSAFADK--EVA-NAAADAPMLEIQN  373 (430)
Q Consensus       350 ~~~~~s~~--g~~-~~~~~d~~i~~~~  373 (430)
                      .+++|+++  +.+ ++++.||.|++|+
T Consensus       411 ~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          411 NSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             eeEeeeccCCceEEEEEcCCceEEEeC
Confidence            99999998  666 9999999999995

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-35  Score=263.94  Aligned_cols=252  Identities=12%  Similarity=0.104  Sum_probs=200.2

Q ss_pred             eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccc
Q 014154           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSS  121 (430)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  121 (430)
                      +..+.+|...|..++|    +|+|++||+|+.|++|+|||+..+...                .+               
T Consensus         2 ~~~~~~h~~~V~~~~~----s~~g~~las~s~D~~v~iw~~~~~~~~----------------~~---------------   46 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVM----DYYGKRMATCSSDKTIKIFEVEGETHK----------------LI---------------   46 (297)
T ss_dssp             CEECCSCSSCEEEEEE----CTTSSEEEEEETTSCEEEEEBCSSCBC----------------CC---------------
T ss_pred             ceeccCCcCceEEEEE----CCCCCEEEEEeCCCEEEEEecCCCCcE----------------EE---------------
Confidence            3457789888655554    678889999999999999998532100                00               


Q ss_pred             cCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe--ee
Q 014154          122 RSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCE--KI  197 (430)
Q Consensus       122 ~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~--~~  197 (430)
                                                       ..+ ..|...|.+++|++  ++++|++|+.|++|++||+++++  .+
T Consensus        47 ---------------------------------~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~   92 (297)
T 2pm7_B           47 ---------------------------------DTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI   92 (297)
T ss_dssp             ---------------------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC
T ss_pred             ---------------------------------EEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE
Confidence                                             011 14667888999976  38999999999999999998764  34


Q ss_pred             EeeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCCeEEEEecCC-----
Q 014154          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEPD-----  269 (430)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp~-----  269 (430)
                      ..+..|.         ..|.+++|  +|+  +.+|++++.|+.|++||++.... ....+.+|...|.+++|+|+     
T Consensus        93 ~~~~~h~---------~~v~~v~~--~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           93 AVHAVHS---------ASVNSVQW--APHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEECCCS---------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEeecCC---------CceeEEEe--CcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            4444443         67999999  665  88999999999999999987532 24677889999999999997     


Q ss_pred             --------CCEEEEEeCCCcEEEEEccCCe----EEeeeeCCCCCCeEEEEecCCC---CeEEEEeCCCcEEEEECCCCc
Q 014154          270 --------SFNIYIGNGSGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPTL---PIIASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       270 --------~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~~---~~l~s~~~dg~i~iwd~~~~~  334 (430)
                              +++|++|+.|+.|++||+++++    +...+.+| ...|.+++|+|++   .+|++++.|++|+|||+.+..
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence                    5799999999999999998765    56778888 8999999999985   799999999999999998753


Q ss_pred             e--eeEEEe--eccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          335 L--LSAVFL--KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       335 ~--~~~~~~--~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .  .... +  .+| ...+++++|+|+|++ ++++.|+.|++|+...
T Consensus       241 ~~~~~~~-~~~~~~-~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          241 GPWKKTL-LKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             SCCEEEE-SSSSCC-SSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             Cccceee-eecccC-CCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            2  1111 2  344 556899999999998 8899999999998754

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-36  Score=303.20  Aligned_cols=329  Identities=9%  Similarity=0.012  Sum_probs=231.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|++|+.||+|+||+....     +....+. |...|..  +.|  +| |++|++++.|++|+|||+.+++.+..+.. 
T Consensus        30 ~~lAsgs~Dg~I~lw~~~~~-----~~~~~~~-~~~~V~~--l~f--sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~-   97 (902)
T 2oaj_A           30 NLLAIATVTGEVHIYGQQQV-----EVVIKLE-DRSAIKE--MRF--VK-GIYLVVINAKDTVYVLSLYSQKVLTTVFV-   97 (902)
T ss_dssp             TEEEEEETTSEEEEECSTTC-----EEEEECS-SCCCEEE--EEE--ET-TTEEEEEETTCEEEEEETTTCSEEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEeCCCc-----EEEEEcC-CCCCEEE--EEE--cC-CCEEEEEECcCeEEEEECCCCcEEEEEcC-
Confidence            46889999999999998875     4444443 6666544  444  45 67999999999999999999887777642 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee------------------------------cC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV------------------------------TK  144 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~------------------------------~~  144 (430)
                              ...+.++.+.+..        ..+++++.+|.+++|++..                              ++
T Consensus        98 --------~~~V~~v~~sp~g--------~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           98 --------PGKITSIDTDASL--------DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             --------SSCEEEEECCTTC--------SEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             --------CCCEEEEEECCCC--------CEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence                    2366666665443        4888888999999887531                              11


Q ss_pred             c-----cccCCCcceEEeeecC----------------------------CCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 014154          145 V-----SAESSCSTVKSWNVCA----------------------------SGTIAFSKVDISEKFSLFGGKGVEVNVWDL  191 (430)
Q Consensus       145 ~-----~~~~~~~~i~~~~~~~----------------------------~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~  191 (430)
                      .     ++++.++.+ +|++..                            ...|.+++|+|++.+|++++.|+.|++||+
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~  240 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDA  240 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEET
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence            1     556678888 998643                            246999999999999999999999999999


Q ss_pred             CCCeeeEe--eC---CCCCCC---C-CCcCCcceeEEEEeec--CC----------------------------------
Q 014154          192 DKCEKIWT--AK---PPPKNS---L-GIFTPTWFTSAAFLSI--DD----------------------------------  226 (430)
Q Consensus       192 ~~~~~~~~--~~---~~~~~~---~-~~~~~~~v~~~~~~~~--~~----------------------------------  226 (430)
                      .+++.+..  +.   .+....   . ...+...|.+++|.+.  |+                                  
T Consensus       241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s  320 (902)
T 2oaj_A          241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS  320 (902)
T ss_dssp             TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred             CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence            98877643  21   111000   0 0001123444444321  11                                  


Q ss_pred             -------------------------------------------CCEEEEEeCCCcEEEEECCCCCcceE-----------
Q 014154          227 -------------------------------------------HRKFVAGTNDHQVRLYDTSAQRRPVM-----------  252 (430)
Q Consensus       227 -------------------------------------------~~~l~s~~~dg~i~iwd~~~~~~~~~-----------  252 (430)
                                                                 ...+++++.|+.|++||+.++.....           
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~  400 (902)
T 2oaj_A          321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL  400 (902)
T ss_dssp             HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred             hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence                                                       22445555566677777654321000           


Q ss_pred             -----------------------------EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE--eee----e
Q 014154          253 -----------------------------SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCF----I  297 (430)
Q Consensus       253 -----------------------------~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--~~~----~  297 (430)
                                                   .+.+|...+.+++|+|++++|++|+.|++|++||+.++...  ..+    .
T Consensus       401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~  480 (902)
T 2oaj_A          401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS  480 (902)
T ss_dssp             TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH
T ss_pred             CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech
Confidence                                         01233344455667899999999999999999999887421  111    1


Q ss_pred             -----CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc--------------------------------------
Q 014154          298 -----GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ--------------------------------------  334 (430)
Q Consensus       298 -----~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------------------------  334 (430)
                           +| ...|++++|+|++++||+|+.||+|+|||+.+++                                      
T Consensus       481 ~~~~~~h-~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (902)
T 2oaj_A          481 RTLNKAK-ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPT  559 (902)
T ss_dssp             HHTTCSS-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCT
T ss_pred             hhcCCCC-CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCC
Confidence                 56 7899999999999999999999999999998763                                      


Q ss_pred             -------eeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          335 -------LLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       335 -------~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                             ++..  +.+| ...|++++|+|||.+++++.|++|++||...
T Consensus       560 ~~~~g~~~~~~--l~~h-~~~V~svafSpdG~lAsgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          560 GVRQGFMPSTA--VHAN-KGKTSAINNSNIGFVGIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             TCSEEEEEEEE--ECCC-SCSEEEEEECBTSEEEEEETTSEEEEEETTT
T ss_pred             CCCCccceeEE--EEcC-CCcEEEEEecCCcEEEEEeCCCcEEEEECCC
Confidence                   2333  5677 5567999999999339999999999999765

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.1e-35  Score=271.99  Aligned_cols=273  Identities=14%  Similarity=0.167  Sum_probs=217.6

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecC--CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      +++.+.|++|+|||+.++     ++...+.  +|...  +.+++|  +|+|++||+|+.||.|+|||+.+++.+..+.+|
T Consensus       118 ~lAvgld~tV~lWd~~tg-----~~~~~~~~~~~~~~--V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h  188 (420)
T 4gga_A          118 VLAVALDNSVYLWSASSG-----DILQLLQMEQPGEY--ISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSH  188 (420)
T ss_dssp             EEEEEETTEEEEEETTTC-----CEEEEEECCSTTCC--EEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             EEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCc--EEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCC
Confidence            555567999999999997     5665554  45555  556666  788999999999999999999999988887664


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                              ...+.++.+-   .       ..+++++.++.+.+|+.....       ..+..+. .|...+..+.++|++
T Consensus       189 --------~~~v~~~s~~---~-------~~l~sgs~d~~i~~~d~~~~~-------~~~~~~~-~h~~~~~~~~~~~~g  242 (420)
T 4gga_A          189 --------SARVGSLSWN---S-------YILSSGSRSGHIHHHDVRVAE-------HHVATLS-GHSQEVCGLRWAPDG  242 (420)
T ss_dssp             --------SSCEEEEEEE---T-------TEEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECTTS
T ss_pred             --------CCceEEEeeC---C-------CEEEEEeCCCceeEeeecccc-------eeeEEec-ccccceeeeeecCCC
Confidence                    3456555432   1       488999999999999875432       2444444 678899999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCee----eEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEE--eCCCcEEEEECCCC
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAG--TNDHQVRLYDTSAQ  247 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~--~~dg~i~iwd~~~~  247 (430)
                      .++++++.|+.+++|+..+++.    +.....+         ...|.+++|  +|. ..+++++  +.|+.|++||+.++
T Consensus       243 ~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~---------~~~V~~~~~--~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          243 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH---------QGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             SEEEEEETTSCEEEEESSCCSSCSCCSEEECCC---------SSCEEEEEE--CTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             CeeeeeeccccceEEeeccccccceeeeeeccc---------CCceeeeee--CCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            9999999999999999987643    2233333         367999999  554 4566654  47999999999986


Q ss_pred             CcceEEEeecCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcE
Q 014154          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYL  325 (430)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i  325 (430)
                      . ....+..| ..+.++.|+|+++.+++++  .|+.|+|||+.+++++.++.+| ...|++++|+|+|.+|+||+.|++|
T Consensus       312 ~-~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg~~l~S~s~D~tv  388 (420)
T 4gga_A          312 A-CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETL  388 (420)
T ss_dssp             E-EEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEE
T ss_pred             c-cceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeE
Confidence            5 36666655 6789999999999998876  6899999999999999999998 8999999999999999999999999


Q ss_pred             EEEECCCCceeeE
Q 014154          326 RFWDIKTRQLLSA  338 (430)
Q Consensus       326 ~iwd~~~~~~~~~  338 (430)
                      +|||+.+..+...
T Consensus       389 riWdv~~~~~~~~  401 (420)
T 4gga_A          389 RLWRCFELDPARR  401 (420)
T ss_dssp             EEECCSCSSCC--
T ss_pred             EEEECCCCCccch
Confidence            9999987665554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.8e-35  Score=270.44  Aligned_cols=276  Identities=15%  Similarity=0.182  Sum_probs=223.1

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCC-CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      +..+++++.||.|++|++.++     +....+.. |...  +.++.|  +|+|++|++|+.||.|++||+.+++.+..+.
T Consensus       103 ~~~l~~~~~d~~v~lw~~~~~-----~~~~~~~~~~~~~--v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  173 (401)
T 4aez_A          103 NLNVVAVALERNVYVWNADSG-----SVSALAETDESTY--VASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRTMA  173 (401)
T ss_dssp             TTSEEEEEETTEEEEEETTTC-----CEEEEEECCTTCC--EEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             CCCEEEEECCCeEEEeeCCCC-----cEeEeeecCCCCC--EEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEEec
Confidence            356899999999999999987     45544443 6666  455555  7788999999999999999999998887766


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      .        +...+.++.+ +  .       ..+++++.++.+.+|++....       ..+..+. .|...|.+++|+|
T Consensus       174 ~--------~~~~v~~~~~-~--~-------~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~-~~~~~v~~~~~~~  227 (401)
T 4aez_A          174 G--------HQARVGCLSW-N--R-------HVLSSGSRSGAIHHHDVRIAN-------HQIGTLQ-GHSSEVCGLAWRS  227 (401)
T ss_dssp             C--------CSSCEEEEEE-E--T-------TEEEEEETTSEEEEEETTSSS-------CEEEEEE-CCSSCEEEEEECT
T ss_pred             C--------CCCceEEEEE-C--C-------CEEEEEcCCCCEEEEecccCc-------ceeeEEc-CCCCCeeEEEEcC
Confidence            4        3457777776 2  2       489999999999999986332       1344444 6788999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEe--CCCcEEEEECCCCCc
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGT--NDHQVRLYDTSAQRR  249 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~--~dg~i~iwd~~~~~~  249 (430)
                      ++++|++++.|+.|++||+.+++.+..+..+.         ..|.+++|  +|++ .++++++  .|+.|++||+.++. 
T Consensus       228 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~---------~~v~~~~~--~p~~~~ll~~~~gs~d~~i~i~d~~~~~-  295 (401)
T 4aez_A          228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHN---------AAVKAVAW--CPWQSNLLATGGGTMDKQIHFWNAATGA-  295 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTCSSEEEEECCCS---------SCCCEEEE--CTTSTTEEEEECCTTTCEEEEEETTTCC-
T ss_pred             CCCEEEEEeCCCeEEEccCCCCCccEEecCCc---------ceEEEEEE--CCCCCCEEEEecCCCCCEEEEEECCCCC-
Confidence            99999999999999999999998888877654         77999999  7755 5666665  79999999999865 


Q ss_pred             ceEEEeecCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEe--eeeCCCCCCeEEEEecCCCCeEEEEeCCCcE
Q 014154          250 PVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYL  325 (430)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i  325 (430)
                      ++..+. +...|.+++|+|++++|++++  .||.|++||+.+++...  .+.+| ...|.+++|+|++.+|++++.||.|
T Consensus       296 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~dg~i  373 (401)
T 4aez_A          296 RVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAASDENL  373 (401)
T ss_dssp             EEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECTTSEE
T ss_pred             EEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeCCCcE
Confidence            466665 567899999999999999954  89999999999976544  46677 8899999999999999999999999


Q ss_pred             EEEECCCCceeeE
Q 014154          326 RFWDIKTRQLLSA  338 (430)
Q Consensus       326 ~iwd~~~~~~~~~  338 (430)
                      ++|++.+++.+..
T Consensus       374 ~iw~~~~~~~~~~  386 (401)
T 4aez_A          374 KFWRVYDGDHVKR  386 (401)
T ss_dssp             EEEECCC------
T ss_pred             EEEECCCCccccc
Confidence            9999999887765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.4e-37  Score=291.13  Aligned_cols=326  Identities=10%  Similarity=-0.005  Sum_probs=222.9

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecC--CCCCceeEEeecCCeEEEecCCCCcccce--ee
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD--SQNDPLLAVARKNGLTDILNPLNGDLRVA--IS   92 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~g~~l~~g~~dg~i~iwd~~~~~~~~~--~~   92 (430)
                      +++++.||+|+||++..+. ........+..|.+.+..++++++.  .+++.+||+|+.||+|+|||+.++.....  +.
T Consensus       176 laS~s~D~tI~iWd~~~~~-~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~  254 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTST-LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM  254 (524)
T ss_dssp             ------CEEEEEEEEETTT-CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred             hccCCCCceEEEEEccCCC-CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence            5678899999999998752 1111223456677776666665531  24578999999999999999977643210  00


Q ss_pred             ccCC-CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEE--E
Q 014154           93 NAGD-SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFS--K  169 (430)
Q Consensus        93 ~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~--~  169 (430)
                      ...+ ..+.++...+.++.+.+.         +.+++++.||++++|++.....       .+..+. .|...|.++  +
T Consensus       255 ~~~p~~~l~~h~~~v~sv~~s~~---------~~lasgs~DgtV~lWD~~~~~~-------~~~~~~-~H~~~V~sv~~~  317 (524)
T 2j04_B          255 CEKPSLTLSLADSLITTFDFLSP---------TTVVCGFKNGFVAEFDLTDPEV-------PSFYDQ-VHDSYILSVSTA  317 (524)
T ss_dssp             CCSCSEEECCTTTCEEEEEESSS---------SEEEEEETTSEEEEEETTBCSS-------CSEEEE-CSSSCEEEEEEE
T ss_pred             ecCceEEEEcCCCCEEEEEecCC---------CeEEEEeCCCEEEEEECCCCCC-------ceEEee-cccccEEEEEEE
Confidence            0000 012345567888777542         4899999999999999864321       233333 678899999  5


Q ss_pred             EcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154          170 VDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       170 ~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  248 (430)
                      |+|++ .+|++++.|++|+|||+++++....+..+..       ...|.+++|  +|++..|++++.|++|++||++++.
T Consensus       318 ~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~-------~~~v~~v~f--sp~~~~l~s~~~d~tv~lwd~~~~~  388 (524)
T 2j04_B          318 YSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR-------GSNLVPVVY--CPQIYSYIYSDGASSLRAVPSRAAF  388 (524)
T ss_dssp             CCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS-------CCSCCCEEE--ETTTTEEEEECSSSEEEEEETTCTT
T ss_pred             cCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc-------cCcccceEe--CCCcCeEEEeCCCCcEEEEECcccc
Confidence            68887 8999999999999999988766554443321       024788999  8999999999999999999999866


Q ss_pred             cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC----CCCCCeEEEEecCCCCeEEEEeCCCc
Q 014154          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG----KCSGSIRSIARHPTLPIIASCGLDSY  324 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~~~v~~i~~~~~~~~l~s~~~dg~  324 (430)
                      . +..+.+|...|++|+|+|++++|++|+.|++|++||+... .+..+..    +....|..++|+|++..+. .. | .
T Consensus       389 ~-~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~-~-~  463 (524)
T 2j04_B          389 A-VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID-S-S  463 (524)
T ss_dssp             C-CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-EC-C-C
T ss_pred             c-ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-cc-C-C
Confidence            4 6778899999999999999999999999999999998653 2222211    1123578999999998552 22 2 2


Q ss_pred             EEEEECC-CCceeeEEEeeccccceEEeeecccccc---c-cccCCCCceEecCCCCC
Q 014154          325 LRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEV---A-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       325 i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~-~~~~~d~~i~~~~~~~~  377 (430)
                      +.+|+.. ++.++..  +.+| ...|++++|+|++.   . ++++.+|.|+||+....
T Consensus       464 ~~~~~~~~~g~~~~~--l~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          464 YEVYPLTVNDVSKAK--IDAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             CCCCC---------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred             ceecccccCCcceee--ecCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence            4444433 4566655  6677 45679999999975   5 88889999999998664

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.2e-36  Score=273.23  Aligned_cols=305  Identities=12%  Similarity=0.065  Sum_probs=238.4

Q ss_pred             ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      ...+|...|..++++++......++++++.++.|++||+.+++.+..+..+...   .+...+.++.+.+....    ..
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~----~~   85 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDA---DADENFYTCAWTYDSNT----SH   85 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECS---CTTCCEEEEEEEECTTT----CC
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecccc---CCCCcEEEEEeccCCCC----CC
Confidence            345788997777776531122446777777889999999988887777654221   24467888888776321    11


Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                      ..+++++.+|.+.+|++....        .+..+. .|...|.+++|+| ++++|++++.||.|++||+.+++.+..+..
T Consensus        86 ~~l~~~~~dg~i~v~d~~~~~--------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  156 (366)
T 3k26_A           86 PLLAVAGSRGIIRIINPITMQ--------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG  156 (366)
T ss_dssp             EEEEEEETTCEEEEECTTTCC--------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred             CEEEEecCCCEEEEEEchhce--------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc
Confidence            479999999999999875332        444544 5789999999999 999999999999999999999988888732


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc---------------------------eEEEe
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP---------------------------VMSFD  255 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---------------------------~~~~~  255 (430)
                      ..      .|...|.+++|  +|++.+|++++.|+.|++||+++++..                           .....
T Consensus       157 ~~------~~~~~v~~~~~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          157 VE------GHRDEVLSADY--DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             TT------SCSSCEEEEEE--CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             cc------cccCceeEEEE--CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence            11      12377999999  899999999999999999999874321                           12233


Q ss_pred             ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe--------------EEeeeeCCCCCCeEEEEecCC--CCeEEEE
Q 014154          256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--------------LLGCFIGKCSGSIRSIARHPT--LPIIASC  319 (430)
Q Consensus       256 ~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--------------~~~~~~~~~~~~v~~i~~~~~--~~~l~s~  319 (430)
                      .|...|.+++|+  +++|++++.|+.|++||+++++              .+..+..| ...|++++|+|+  +.+|+++
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~~l~~~  305 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS-QCDIWYMRFSMDFWQKMLALG  305 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS-SCCSSCCCCEECTTSSEEEEE
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc-CCcEEEEEEcCCCCCcEEEEE
Confidence            488999999998  6799999999999999998764              37778887 889999999999  9999999


Q ss_pred             eCCCcEEEEECCCCceee--EEEeeccc-cceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          320 GLDSYLRFWDIKTRQLLS--AVFLKQHL-NEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       320 ~~dg~i~iwd~~~~~~~~--~~~~~~~~-~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      +.||.|++||+.+++...  ...+.+|. ...|.+++|+|++++ ++++.||.|++|+..
T Consensus       306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            999999999999886543  11144442 456899999999998 899999999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.5e-36  Score=280.59  Aligned_cols=294  Identities=13%  Similarity=0.118  Sum_probs=220.6

Q ss_pred             ecCCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154           44 RWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (430)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  122 (430)
                      ....|...|++++  |  +| ++++||+|+.||.|+|||+.++.....+.      +.+|.+.|.++.|.+...      
T Consensus       114 ~~~~~~~~V~~l~--~--~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~------~~gH~~~V~~l~f~p~~~------  177 (435)
T 4e54_B          114 KAAPFDRRATSLA--W--HPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK------GIGAGGSITGLKFNPLNT------  177 (435)
T ss_dssp             EEEECSSCEEEEE--E--CSSCTTCEEEEETTSCEEEECSSCCSCCEEEC------CCSSSCCCCEEEECSSCT------
T ss_pred             cCCCCCCCEEEEE--E--eCCCCCEEEEEeCCCEEEEEECCCCCceeEEE------ccCCCCCEEEEEEeCCCC------
Confidence            3445666655544  4  55 45689999999999999998776544433      234567888888875444      


Q ss_pred             CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC--CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (430)
Q Consensus       123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  200 (430)
                       ..+++++.||++++|++...         .+..+...+  ...+.+++|+|++.+|++|+.||.|++||++. +.+..+
T Consensus       178 -~~l~s~s~D~~v~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~  246 (435)
T 4e54_B          178 -NQFYASSMEGTTRLQDFKGN---------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNL  246 (435)
T ss_dssp             -TEEEEECSSSCEEEEETTSC---------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCS
T ss_pred             -CEEEEEeCCCEEEEeeccCC---------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEE
Confidence             58999999999999997422         333333222  34578899999999999999999999999864 445555


Q ss_pred             CCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcc--eEEEeecCCCeEEEEecCCCCEEEEEe
Q 014154          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRP--VMSFDFRETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~  277 (430)
                      ..|.         ..|.+++|  +|++. +|++|+.|+.|++||+++....  +....+|...|++++|+|++++|++++
T Consensus       247 ~~h~---------~~v~~v~~--~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          247 RMHK---------KKVTHVAL--NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             BCCS---------SCEEEEEE--CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             eccc---------ceEEeeee--cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence            5443         77999999  77765 7889999999999999875432  233457889999999999999999999


Q ss_pred             CCCcEEEEEccCCeEEeeeeCCCC-----CCeEEEEecCCCCeEEEEe------------CCCcEEEEECCCCceeeEEE
Q 014154          278 GSGDLASVDIRTGKLLGCFIGKCS-----GSIRSIARHPTLPIIASCG------------LDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       278 ~d~~i~iwd~~~~~~~~~~~~~~~-----~~v~~i~~~~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~  340 (430)
                      .|+.|++||++++.....+..|..     ..+....|+|++.++++++            .++.|++||..+++.+..+ 
T Consensus       316 ~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l-  394 (435)
T 4e54_B          316 QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL-  394 (435)
T ss_dssp             SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE-
T ss_pred             CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE-
Confidence            999999999999988777765511     1234556778777777664            3457999999999998874 


Q ss_pred             eeccccceEEee-eccccccccccCCCCceEecCCCCC
Q 014154          341 LKQHLNEVVFDS-AFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       341 ~~~~~~~~v~~~-~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                      ..+| ...|.++ +|+|+|.+++++.|+.|+||+....
T Consensus       395 ~~~~-~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~g  431 (435)
T 4e54_B          395 YDPE-SSGISSLNEFNPMGDTLASAMGYHILIWSQQEA  431 (435)
T ss_dssp             CCSS-CCCCCCEEEECTTSSCEEEECSSEEEECCCC--
T ss_pred             eCCC-CCcEEEEEEECCCCCEEEEEcCCcEEEEECCcC
Confidence            3455 3445665 7999999955566899999998653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-34  Score=263.30  Aligned_cols=283  Identities=13%  Similarity=0.140  Sum_probs=234.0

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++|+.||.|++||+..+     +.+..+.+|...+.  ++.+  +|++++|++++.||.|++||+.+++.+..+.. 
T Consensus        45 ~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~h~~~v~--~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-  114 (369)
T 3zwl_B           45 DLLFSCSKDSSASVWYSLNG-----ERLGTLDGHTGTIW--SIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVATWKS-  114 (369)
T ss_dssp             CEEEEEESSSCEEEEETTTC-----CEEEEECCCSSCEE--EEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEeCCCc-----hhhhhhhhcCCcEE--EEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEeec-
Confidence            46889999999999999987     78888999988854  4555  67889999999999999999999988777652 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC-----CeeEEEEeeecCcc---ccCCCcceEEeeecCCC--c
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-----GKASMRSIEVTKVS---AESSCSTVKSWNVCASG--T  164 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~v~~~~~~~~~---~~~~~~~i~~~~~~~~~--~  164 (430)
                              ...+.++.+.+..        ..++++..+     +.+.+|++......   .......+.... .+..  .
T Consensus       115 --------~~~v~~~~~~~~~--------~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  177 (369)
T 3zwl_B          115 --------PVPVKRVEFSPCG--------NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDA  177 (369)
T ss_dssp             --------SSCEEEEEECTTS--------SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCC
T ss_pred             --------CCCeEEEEEccCC--------CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCccc
Confidence                    2467777776544        478888888     99999999765431   000111222222 2233  8


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      +.+++|+|++++|++++.||.|++||+.+ ...+..+..+.         ..|.+++|  +|++.+|++++.|+.|++||
T Consensus       178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~v~d  246 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE---------KSISDMQF--SPDLTYFITSSRDTNSFLVD  246 (369)
T ss_dssp             EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEE
T ss_pred             eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC---------CceeEEEE--CCCCCEEEEecCCceEEEEE
Confidence            99999999999999999999999999998 67777776654         67999999  89999999999999999999


Q ss_pred             CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC--------------cEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--------------DLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  309 (430)
                      ++++. .+..+. +...+.+++|+|+++++++++.++              .+++||+.+++.+..+.+| ...|++++|
T Consensus       247 ~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v~~~~~  323 (369)
T 3zwl_B          247 VSTLQ-VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPLNTVAI  323 (369)
T ss_dssp             TTTCC-EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-SSCEEEEEE
T ss_pred             CCCCc-eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcEEEEEE
Confidence            99865 355555 678999999999999999999988              8999999999999999998 899999999


Q ss_pred             cCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154          310 HPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       310 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      +|++++|++++.||.|++|+++++.....
T Consensus       324 s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  352 (369)
T 3zwl_B          324 SPQGTSYASGGEDGFIRLHHFEKSYFDFK  352 (369)
T ss_dssp             CTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred             CCCCCEEEEEcCCCeEEEEECccccchhH
Confidence            99999999999999999999987665443

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-35  Score=277.31  Aligned_cols=285  Identities=17%  Similarity=0.276  Sum_probs=228.1

Q ss_pred             CCCCc-eeEEe----------ecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc
Q 014154           62 SQNDP-LLAVA----------RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (430)
Q Consensus        62 ~p~g~-~l~~g----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  130 (430)
                      +|+|+ +|++|          +.||.|+|||+.++.....+..      ..+...+.++.+.+..        ..+++++
T Consensus        21 sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~------~~~~~~v~~~~~s~~~--------~~l~~~~   86 (416)
T 2pm9_A           21 SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS------LQVDSKFNDLDWSHNN--------KIIAGAL   86 (416)
T ss_dssp             CSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC------CCCSSCEEEEEECSSS--------SCEEEEE
T ss_pred             CCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE------EecCCceEEEEECCCC--------CeEEEEc
Confidence            67776 88998          8899999999987763322111      1244678888875543        4889999


Q ss_pred             cCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe------eeEeeCCC
Q 014154          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCE------KIWTAKPP  203 (430)
Q Consensus       131 ~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~  203 (430)
                      .+|.+.+|++.....    ....+..+. .|...|.+++|+|+ +++|++++.|+.|++||+.+++      ....+.. 
T Consensus        87 ~dg~v~vw~~~~~~~----~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-  160 (416)
T 2pm9_A           87 DNGSLELYSTNEANN----AINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ-  160 (416)
T ss_dssp             SSSCEEEECCSSTTS----CCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC-
T ss_pred             cCCeEEEeecccccc----cccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc-
Confidence            999999999864210    011333333 57889999999998 8999999999999999998876      2222211 


Q ss_pred             CCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEECCCCCcceEEEeec------CCCeEEEEecCCC-CEEEE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDS-FNIYI  275 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~sp~~-~~l~~  275 (430)
                           ...|...|.+++|  +|+ +.+|++++.|+.|++||+++++ .+..+..|      ...|.+++|+|++ .+|++
T Consensus       161 -----~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  232 (416)
T 2pm9_A          161 -----SMSSVDEVISLAW--NQSLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT  232 (416)
T ss_dssp             -----SCCSSCCCCEEEE--CSSCTTEEEEESSSSCEEEEETTTTE-EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEE
T ss_pred             -----ccCCCCCeeEEEe--CCCCCcEEEEEcCCCCEEEEECCCCC-cceEEeccccccccCCceEEEEECCCCCCEEEE
Confidence                 1123477999999  787 7899999999999999999855 46777766      7889999999997 68999


Q ss_pred             EeCCC---cEEEEEccCC-eEEeeee-CCCCCCeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceE
Q 014154          276 GNGSG---DLASVDIRTG-KLLGCFI-GKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVV  349 (430)
Q Consensus       276 ~~~d~---~i~iwd~~~~-~~~~~~~-~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  349 (430)
                      ++.|+   .|++||++++ +++..+. +| ...|.+++|+| ++.+|++++.||.|++||+.+++.+..  +.+| ...+
T Consensus       233 ~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~--~~~~-~~~v  308 (416)
T 2pm9_A          233 ATGSDNDPSILIWDLRNANTPLQTLNQGH-QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ--FPAR-GNWC  308 (416)
T ss_dssp             EECCSSSCCCCEEETTSTTSCSBCCCSCC-SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE--EECS-SSCC
T ss_pred             EECCCCCceEEEEeCCCCCCCcEEeecCc-cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee--ecCC-CCce
Confidence            99998   9999999986 6677777 77 89999999999 899999999999999999999999887  5567 4557


Q ss_pred             Eeeeccccc-cc-cccCCCCceEecCCCCCc
Q 014154          350 FDSAFADKE-VA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       350 ~~~~~s~~g-~~-~~~~~d~~i~~~~~~~~~  378 (430)
                      .+++|+|++ .+ ++++.|+.|++|+.....
T Consensus       309 ~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          309 FKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             CCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             EEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            999999998 56 899999999999987654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=257.46  Aligned_cols=275  Identities=14%  Similarity=0.150  Sum_probs=212.1

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~   96 (430)
                      +++.+.|++|+|||+.++     +++..+..|.....+.++.+  +|+|++||+|+.||+|++||+.+++.+..+.+|. 
T Consensus        38 ~lAvg~D~tV~iWd~~tg-----~~~~~~~~~~~~~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~-  109 (318)
T 4ggc_A           38 VLAVALDNSVYLWSASSG-----DILQLLQMEQPGEYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS-  109 (318)
T ss_dssp             EEEEEETTEEEEEETTTC-----CEEEEEECCSTTCCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-
T ss_pred             EEEEEeCCEEEEEECCCC-----CEEEEEEecCCCCeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEEecCcc-
Confidence            566667999999999987     66666554444433566666  7889999999999999999999999888877642 


Q ss_pred             CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (430)
Q Consensus        97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~  176 (430)
                             ..+..+...   .       ..+++++.++.+.+|......       ..+... ..|...+..+.+++++++
T Consensus       110 -------~~~~~~~~~---~-------~~l~s~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~  164 (318)
T 4ggc_A          110 -------ARVGSLSWN---S-------YILSSGSRSGHIHHHDVRVAE-------HHVATL-SGHSQEVCGLRWAPDGRH  164 (318)
T ss_dssp             -------SCEEEEEEE---T-------TEEEEEETTSEEEEEETTSSS-------CEEEEE-ECCSSCEEEEEECTTSSE
T ss_pred             -------ceEEEeecC---C-------CEEEEEecCCceEeeecCCCc-------eeEEEE-cCccCceEEEEEcCCCCE
Confidence                   244433321   2       488899999999999865332       133333 367889999999999999


Q ss_pred             EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EE--EEEeCCCcEEEEECCCCCcceEE
Q 014154          177 SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF--VAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       177 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l--~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      |++++.|+.|++||+.+++........     ...+...|.++.+  .|++. .+  ++++.++.|++||.....  ...
T Consensus       165 l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~i~lwd~~~~~--~~~  235 (318)
T 4ggc_A          165 LASGGNDNLVNVWPSAPGEGGWVPLQT-----FTQHQGAVKAVAW--CPWQSNVLATGGGTSDRHIRIWNVCSGA--CLS  235 (318)
T ss_dssp             EEEEETTSCEEEEESSCBTTBSCCSEE-----ECCCCSCEEEEEE--CTTSTTEEEEEECTTTCEEEEEETTTCC--EEE
T ss_pred             EEEEecCcceeEEECCCCcccccceee-----ecccCCceEEEEe--cCCCCcEEEEEecCCCCEEEEEeccccc--ccc
Confidence            999999999999999876532211110     0012266888888  55443 33  456788999999999755  334


Q ss_pred             EeecCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ...+...+..+.|+|++..+++++  .|+.|++||+++++++.++.+| ...|++++|+|++++|++|+.||+|+|||+.
T Consensus       236 ~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          236 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            445667899999999999888765  7899999999999999999998 8999999999999999999999999999997


Q ss_pred             CCc
Q 014154          332 TRQ  334 (430)
Q Consensus       332 ~~~  334 (430)
                      +..
T Consensus       315 ~~d  317 (318)
T 4ggc_A          315 ELD  317 (318)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.3e-35  Score=268.64  Aligned_cols=300  Identities=12%  Similarity=0.122  Sum_probs=229.5

Q ss_pred             eecCCCCCCcceeeeeecCCCCCc-eeEEeec---CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccc
Q 014154           43 ERWGDPHSSNCVLAASIDDSQNDP-LLAVARK---NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREE  118 (430)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  118 (430)
                      ..+.+|...+.  ++.|  +|+++ ++++|+.   ||.|+|||+.+++.......       .+...+.++.+.+.... 
T Consensus        12 ~~~~~h~~~v~--~~~~--~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~-   79 (357)
T 3i2n_A           12 HIQKGFNYTVF--DCKW--VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI-------EKAKPIKCGTFGATSLQ-   79 (357)
T ss_dssp             EEEEECSSCEE--EEEE--CTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE-------EESSCEEEEECTTCCTT-
T ss_pred             hhccCCCCceE--EEEE--cCCCceEEEecCccCCCcEEEEEeCCCCcccceeee-------cccCcEEEEEEcCCCCC-
Confidence            34566888855  4555  66775 4556766   99999999988875544321       23457787777665300 


Q ss_pred             ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE------EcCCCCEEEEEeCCCeEEEEECC
Q 014154          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK------VDISEKFSLFGGKGVEVNVWDLD  192 (430)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~------~~~~~~~l~~~~~d~~i~~~d~~  192 (430)
                          +..+++++.+|.+.+|++....       ..+..+. .|...|.++.      |+|++++|++++.|+.|++||+.
T Consensus        80 ----~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~  147 (357)
T 3i2n_A           80 ----QRYLATGDFGGNLHIWNLEAPE-------MPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR  147 (357)
T ss_dssp             ----TCCEEEEETTSCEEEECTTSCS-------SCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT
T ss_pred             ----CceEEEecCCCeEEEEeCCCCC-------ccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC
Confidence                1589999999999999976432       1344444 6788899995      56889999999999999999999


Q ss_pred             CCe-eeEeeCCCCCCCCCCcCCcceeEEEEe--ecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC-
Q 014154          193 KCE-KIWTAKPPPKNSLGIFTPTWFTSAAFL--SIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-  268 (430)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-  268 (430)
                      ++. .+..+..+....     ...+.+++|.  .+|++.+|++++.|+.|++||++++..  .....|...|.+++|+| 
T Consensus       148 ~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~v~~~~~~~~  220 (357)
T 3i2n_A          148 QKDDPVANMEPVQGEN-----KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL--RWETNIKNGVCSLEFDRK  220 (357)
T ss_dssp             SCSSCSEEECCCTTSC-----CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEESCS
T ss_pred             CCCCcceeccccCCCC-----CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce--eeecCCCCceEEEEcCCC
Confidence            876 566665544221     1468888841  178999999999999999999998653  44567889999999999 


Q ss_pred             --CCCEEEEEeCCCcEEEEEccCCeEEeeee-----CCCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECCCCc------
Q 014154          269 --DSFNIYIGNGSGDLASVDIRTGKLLGCFI-----GKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKTRQ------  334 (430)
Q Consensus       269 --~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~~~------  334 (430)
                        ++.+|++++.||.|++||+++++.+..+.     +| ...|++++|+|++. +|++++.||.|++||++++.      
T Consensus       221 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  299 (357)
T 3i2n_A          221 DISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD  299 (357)
T ss_dssp             SSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred             CCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence              99999999999999999999877655554     77 89999999999998 89999999999999998643      


Q ss_pred             -------------eeeEEEeeccccceEEeeeccccccc-c-ccCCCCceEecCCCCC
Q 014154          335 -------------LLSAVFLKQHLNEVVFDSAFADKEVA-N-AAADAPMLEIQNGNDT  377 (430)
Q Consensus       335 -------------~~~~~~~~~~~~~~v~~~~~s~~g~~-~-~~~~d~~i~~~~~~~~  377 (430)
                                   .+..  +.+| ...|.+++|+|++.+ + +++.|+.|++|+....
T Consensus       300 ~~g~~~~~~~~~~~~~~--~~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          300 SEGIEMGVAGSVSLLQN--VTLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             TTSCCCCCCCEEEEEEE--EECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             CCCCccccccccceeec--cccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence                         3333  5567 556799999999998 5 7899999999998653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.3e-35  Score=268.00  Aligned_cols=289  Identities=10%  Similarity=0.067  Sum_probs=230.8

Q ss_pred             CCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           46 GDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        46 ~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      ..|...+..+++    +|+|++|++|+.||.|++||+.+++  .+..+..        +...+.++.+.+..        
T Consensus         5 ~~~~~~i~~~~~----s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~--------   64 (372)
T 1k8k_C            5 SFLVEPISCHAW----NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE--------HNGQVTGVDWAPDS--------   64 (372)
T ss_dssp             ESCSSCCCEEEE----CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEEETTT--------
T ss_pred             cccCCCeEEEEE----CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC--------CCCcccEEEEeCCC--------
Confidence            347777555544    6788899999999999999998876  5666654        34578888877643        


Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEe-eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEe
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW-NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWT  199 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~  199 (430)
                      ..+++++.++.+.+|++....        ..... ...+...|.+++|+|++++|++++.|+.|++||++.+..   ...
T Consensus        65 ~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~  136 (372)
T 1k8k_C           65 NRIVTCGTDRNAYVWTLKGRT--------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH  136 (372)
T ss_dssp             TEEEEEETTSCEEEEEEETTE--------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCe--------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee
Confidence            489999999999999986432        12222 235678999999999999999999999999999987653   222


Q ss_pred             e-CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC-----------------CCcceEEEeecCCCe
Q 014154          200 A-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-----------------QRRPVMSFDFRETPI  261 (430)
Q Consensus       200 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------------~~~~~~~~~~~~~~i  261 (430)
                      + ..+         ...|.+++|  +|++.+|++++.|+.|++||++.                 ...++..+..|...|
T Consensus       137 ~~~~~---------~~~i~~~~~--~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  205 (372)
T 1k8k_C          137 IKKPI---------RSTVLSLDW--HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV  205 (372)
T ss_dssp             ECTTC---------CSCEEEEEE--CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCE
T ss_pred             eeccc---------CCCeeEEEE--cCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeE
Confidence            2 222         367999999  88999999999999999999641                 133577788899999


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC--Cce--ee
Q 014154          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT--RQL--LS  337 (430)
Q Consensus       262 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~--~~~--~~  337 (430)
                      .+++|+|++++|++++.|+.|++||+++++++..+..| ...|.+++|+|++.+|+++ .|+.|++|++.+  +..  +.
T Consensus       206 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~  283 (372)
T 1k8k_C          206 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGG  283 (372)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC-CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEee
Confidence            99999999999999999999999999999999999988 8899999999999988877 899999999987  421  00


Q ss_pred             E----------------------------------EEe-eccccceEEeeecc-ccc---cc-cccCCCCceEecCCCC
Q 014154          338 A----------------------------------VFL-KQHLNEVVFDSAFA-DKE---VA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       338 ~----------------------------------~~~-~~~~~~~v~~~~~s-~~g---~~-~~~~~d~~i~~~~~~~  376 (430)
                      .                                  ..+ .+| ...|++++|. ++|   .+ ++++.||.|++|+...
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          284 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             CCCCC--------CHHHHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccCccccchhhhcchhhhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence            0                                  112 366 4567999966 565   66 9999999999999765

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-34  Score=288.90  Aligned_cols=284  Identities=11%  Similarity=0.100  Sum_probs=224.8

Q ss_pred             ccCCCCCCC---cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecC
Q 014154            6 TLECPGCPP---LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP   82 (430)
Q Consensus         6 ~~~~~~~~~---~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~   82 (430)
                      .+.|...++   ..|+||+.||+|++|++.............+.+|...|..+  ++  +|+|++|++|+.||+|+|||+
T Consensus       384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v--~~--s~~g~~l~sgs~Dg~v~vwd~  459 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV--VL--SSDGQFALSGSWDGELRLWDL  459 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEE--EE--CTTSSEEEEEETTSEEEEEET
T ss_pred             eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEE--EE--CCCCCEEEEEeCCCcEEEEEC
Confidence            344444432   46899999999999999874222234556788899886554  44  678899999999999999999


Q ss_pred             CCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee--ec
Q 014154           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VC  160 (430)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~  160 (430)
                      .++..+..+.+|        ...+.++.+.+..        ..+++++.|+.+++|++....        ...+..  ..
T Consensus       460 ~~~~~~~~~~~h--------~~~v~~~~~s~~~--------~~l~s~s~D~~i~iwd~~~~~--------~~~~~~~~~~  515 (694)
T 3dm0_A          460 AAGVSTRRFVGH--------TKDVLSVAFSLDN--------RQIVSASRDRTIKLWNTLGEC--------KYTISEGGEG  515 (694)
T ss_dssp             TTTEEEEEEECC--------SSCEEEEEECTTS--------SCEEEEETTSCEEEECTTSCE--------EEEECSSTTS
T ss_pred             CCCcceeEEeCC--------CCCEEEEEEeCCC--------CEEEEEeCCCEEEEEECCCCc--------ceeeccCCCC
Confidence            999888777654        4578888776544        489999999999999853211        111111  24


Q ss_pred             CCCceEEEEEcCCC--CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154          161 ASGTIAFSKVDISE--KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (430)
Q Consensus       161 ~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  238 (430)
                      |...|.+++|+|++  ..|++++.|++|++||+.+++....+..|.         ..|++++|  +|++.+|++|+.|+.
T Consensus       516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~---------~~v~~v~~--spdg~~l~sg~~Dg~  584 (694)
T 3dm0_A          516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT---------GYVSTVAV--SPDGSLCASGGKDGV  584 (694)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSB
T ss_pred             CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCC---------CCEEEEEE--eCCCCEEEEEeCCCe
Confidence            66789999999976  689999999999999999998888887765         77999999  899999999999999


Q ss_pred             EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC------------------
Q 014154          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------------------  300 (430)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------  300 (430)
                      |++||+++++. +..+.. ...|.+++|+|++.+|++++ ++.|++||+++++.+..+..+.                  
T Consensus       585 i~iwd~~~~~~-~~~~~~-~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (694)
T 3dm0_A          585 VLLWDLAEGKK-LYSLEA-NSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK  661 (694)
T ss_dssp             CEEEETTTTEE-EECCBC-SSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------C
T ss_pred             EEEEECCCCce-EEEecC-CCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCce
Confidence            99999998653 555554 46899999999998887765 5669999999999887775431                  


Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ...+++++|+|++++|++|+.||.|+||++.
T Consensus       662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            1137899999999999999999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-35  Score=271.88  Aligned_cols=319  Identities=13%  Similarity=0.133  Sum_probs=235.9

Q ss_pred             CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCc-eeEEeecCCeEEEecC----CCCcc------ccee
Q 014154           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNP----LNGDL------RVAI   91 (430)
Q Consensus        23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~----~~~~~------~~~~   91 (430)
                      ...+.+|+++..     ........|...+.  ++.+  +|+|+ +||+|+.||.|++|++    .+++.      ...+
T Consensus        24 ~~~~~~~~~~~~-----~~~~~~~~~~~~v~--~~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~   94 (425)
T 1r5m_A           24 NSIDSSDDLDGF-----VKILKEIVKLDNIV--SSTW--NPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAEL   94 (425)
T ss_dssp             ----------CC-----CEECEEEEECSCCS--EEEE--CSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEE
T ss_pred             ccccccccchhh-----hhheeeeeccCceE--EEEE--CCCCCcEEEEecCCceEEEEEEecccCCccccccccccccc
Confidence            345667877663     22222233456654  4455  77888 9999999999999999    88773      3333


Q ss_pred             eccCC--CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154           92 SNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (430)
Q Consensus        92 ~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~  169 (430)
                      .....  .....+...+.++.+.+..        ..+++++.+|.+.+|+..         ...+..+. .|...|.+++
T Consensus        95 ~~~~~~~~~~~~~~~~v~~~~~s~~~--------~~l~~~~~dg~i~i~~~~---------~~~~~~~~-~~~~~v~~~~  156 (425)
T 1r5m_A           95 RHPFALSASSGKTTNQVTCLAWSHDG--------NSIVTGVENGELRLWNKT---------GALLNVLN-FHRAPIVSVK  156 (425)
T ss_dssp             ECCCCCC------CBCEEEEEECTTS--------SEEEEEETTSCEEEEETT---------SCEEEEEC-CCCSCEEEEE
T ss_pred             cccccccccccCCCCceEEEEEcCCC--------CEEEEEeCCCeEEEEeCC---------CCeeeecc-CCCccEEEEE
Confidence            32100  0011245578888876643        489999999999999821         12444443 5788999999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCC------CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG------IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      |+|++++|++++.|+.|++||+.+++.+..+..+......      ......+.++.|  +++ ..+++++.++.|++||
T Consensus       157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~g~i~~~d  233 (425)
T 1r5m_A          157 WNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEW--VDD-DKFVIPGPKGAIFVYQ  233 (425)
T ss_dssp             ECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEE--EET-TEEEEECGGGCEEEEE
T ss_pred             ECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEE--cCC-CEEEEEcCCCeEEEEE
Confidence            9999999999999999999999999988887765422100      000112888899  555 4688999999999999


Q ss_pred             CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                      +.++. ++..+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..| ...|.+++|+|++ +|++++.|+
T Consensus       234 ~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~-~l~~~~~d~  310 (425)
T 1r5m_A          234 ITEKT-PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH-SQSIVSASWVGDD-KVISCSMDG  310 (425)
T ss_dssp             TTCSS-CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC-SSCEEEEEEETTT-EEEEEETTS
T ss_pred             cCCCc-eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC-CccEEEEEECCCC-EEEEEeCCC
Confidence            99865 57888899999999999999999999999999999999999999899887 8899999999999 999999999


Q ss_pred             cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       324 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      .|++||+.+++.+..  +..| ...+.+++|+|++.+ ++++.|+.|++|+....
T Consensus       311 ~i~i~d~~~~~~~~~--~~~~-~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~  362 (425)
T 1r5m_A          311 SVRLWSLKQNTLLAL--SIVD-GVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL  362 (425)
T ss_dssp             EEEEEETTTTEEEEE--EECT-TCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred             cEEEEECCCCcEeEe--cccC-CccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            999999999998887  4455 455799999999998 88999999999998653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.7e-34  Score=265.57  Aligned_cols=290  Identities=15%  Similarity=0.127  Sum_probs=237.4

Q ss_pred             eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (430)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  122 (430)
                      ....+|...+.+..+.+  ++  ..+++++.||.|++||+.+++....+..       .+...+.++.+.+..       
T Consensus        85 ~~~~~~~~~~~~~~~~~--s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~-------  146 (401)
T 4aez_A           85 LDAPGIIDDYYLNLLDW--SN--LNVVAVALERNVYVWNADSGSVSALAET-------DESTYVASVKWSHDG-------  146 (401)
T ss_dssp             EECTTCCCCTTCBCEEE--CT--TSEEEEEETTEEEEEETTTCCEEEEEEC-------CTTCCEEEEEECTTS-------
T ss_pred             eeCCCCcCCceEEEEee--cC--CCEEEEECCCeEEEeeCCCCcEeEeeec-------CCCCCEEEEEECCCC-------
Confidence            33445666677777777  32  4588889999999999999987766554       134678888876643       


Q ss_pred             CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEeeC
Q 014154          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIWTAK  201 (430)
Q Consensus       123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~  201 (430)
                       ..+++++.+|.+.+|++....        .+..+. .|...|.+++|  ++++|++++.||.|++||++ .......+.
T Consensus       147 -~~l~~~~~dg~i~iwd~~~~~--------~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  214 (401)
T 4aez_A          147 -SFLSVGLGNGLVDIYDVESQT--------KLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ  214 (401)
T ss_dssp             -SEEEEEETTSCEEEEETTTCC--------EEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             -CEEEEECCCCeEEEEECcCCe--------EEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc
Confidence             489999999999999975332        445554 67889999999  46799999999999999998 455566666


Q ss_pred             CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC-EEEEEe--C
Q 014154          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-NIYIGN--G  278 (430)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~--~  278 (430)
                      .+.         ..|.+++|  +|++.+|++|+.|+.|++||++++. ++..+..|...|.+++|+|++. ++++++  .
T Consensus       215 ~~~---------~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~  282 (401)
T 4aez_A          215 GHS---------SEVCGLAW--RSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM  282 (401)
T ss_dssp             CCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred             CCC---------CCeeEEEE--cCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence            554         77999999  8899999999999999999999855 5778888999999999999774 555554  6


Q ss_pred             CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      |+.|++||+++++++..+..  ...|.+++|+|++.+|++++  .||.|++||+.+++......+.+| ...|.+++|+|
T Consensus       283 d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~  359 (401)
T 4aez_A          283 DKQIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSP  359 (401)
T ss_dssp             TCEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECT
T ss_pred             CCEEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECC
Confidence            99999999999999988874  57899999999999999954  899999999999887777667777 45579999999


Q ss_pred             cccc-cccCCCCceEecCCCCC
Q 014154          357 KEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       357 ~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      +|.+ ++++.|+.|++|+....
T Consensus       360 dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          360 DGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             TSSEEEEECTTSEEEEEECCC-
T ss_pred             CCCEEEEEeCCCcEEEEECCCC
Confidence            9998 88999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=270.28  Aligned_cols=317  Identities=9%  Similarity=0.064  Sum_probs=247.4

Q ss_pred             CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCCCcccceeecc-----C
Q 014154           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNA-----G   95 (430)
Q Consensus        22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~-----~   95 (430)
                      .++.+++|++..+     +....+.+|...+.+  +.+  +| ++++|++|+.||.|++||+.++.....+...     .
T Consensus        21 ~~~~~~v~~~~~~-----~~~~~~~~h~~~v~~--~~~--s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~   91 (408)
T 4a11_B           21 AESTRRVLGLELN-----KDRDVERIHGGGINT--LDI--EPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIG   91 (408)
T ss_dssp             HHHHHHHHTEEEC-----TTEEECCCCSSCEEE--EEE--CTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEEC
T ss_pred             ccCcceeeccccC-----cceeeeeccCCcEEE--EEE--ecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccc
Confidence            4467889988876     566677889988554  445  67 8889999999999999999988766655420     1


Q ss_pred             CCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC---
Q 014154           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI---  172 (430)
Q Consensus        96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~---  172 (430)
                      ......+...+.++.+.+...       ..+++++.++.+.+|++....        .+..+.  +...+.++.+++   
T Consensus        92 ~~~~~~~~~~v~~~~~~~~~~-------~~l~s~~~d~~i~iwd~~~~~--------~~~~~~--~~~~~~~~~~~~~~~  154 (408)
T 4a11_B           92 RDHPDVHRYSVETVQWYPHDT-------GMFTSSSFDKTLKVWDTNTLQ--------TADVFN--FEETVYSHHMSPVST  154 (408)
T ss_dssp             TTCTTCCSSCEEEEEECTTCT-------TCEEEEETTSEEEEEETTTTE--------EEEEEE--CSSCEEEEEECSSCS
T ss_pred             ccccccCCCcEEEEEEccCCC-------cEEEEEeCCCeEEEeeCCCCc--------cceecc--CCCceeeeEeecCCC
Confidence            111123667888888876444       589999999999999976332        333433  567899999988   


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcce
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~  251 (430)
                      ++.++++++.++.|++||+.+++.+..+..+.         ..|.+++|  +|++. +|++++.||.|++||++....++
T Consensus       155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~ll~~~~~dg~i~i~d~~~~~~~~  223 (408)
T 4a11_B          155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR---------QEILAVSW--SPRYDYILATASADSRVKLWDVRRASGCL  223 (408)
T ss_dssp             SCCEEEEEESSSSEEEEESSSSCCCEEECCCC---------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTCSSCCS
T ss_pred             CCcEEEEEcCCCeEEEEeCCCcceeeeecCCC---------CcEEEEEE--CCCCCcEEEEEcCCCcEEEEECCCCCccc
Confidence            45599999999999999999998888887665         77999999  78887 69999999999999999866555


Q ss_pred             EEE---------------eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeEEEEecCC
Q 014154          252 MSF---------------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSIARHPT  312 (430)
Q Consensus       252 ~~~---------------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~i~~~~~  312 (430)
                      ..+               ..|...|.+++|+|++++|++++.|+.|++||+++++....+..+.    ...+........
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (408)
T 4a11_B          224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGC  303 (408)
T ss_dssp             EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSS
T ss_pred             ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCC
Confidence            555               5688899999999999999999999999999999988765544320    112222223334


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154          313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                      +..+++++.|+.|++||+.+++.+..  +.+| ...|.+++|+|++.+ ++++.||.|++|+.....
T Consensus       304 ~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          304 SSEFVFVPYGSTIAVYTVYSGEQITM--LKGH-YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             SSCEEEEEETTEEEEEETTTCCEEEE--ECCC-SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             CceEEEEecCCEEEEEECcCCcceee--eccC-CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence            55677778899999999999999988  6677 556799999999998 899999999999987743

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-33  Score=253.06  Aligned_cols=272  Identities=13%  Similarity=0.101  Sum_probs=220.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc---cccee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAI   91 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~---~~~~~   91 (430)
                      ..+++|+.||.|++||+..+     +....+..|...+..  +.+  +|++++|++|+.||.|++|++.+..   .+..+
T Consensus        30 ~~l~s~~~dg~v~vw~~~~~-----~~~~~~~~~~~~v~~--~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~  100 (313)
T 3odt_A           30 SKVASVSRDGTVRLWSKDDQ-----WLGTVVYTGQGFLNS--VCY--DSEKELLLFGGKDTMINGVPLFATSGEDPLYTL  100 (313)
T ss_dssp             TEEEEEETTSEEEEEEESSS-----EEEEEEEECSSCEEE--EEE--ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEE
T ss_pred             CEEEEEEcCCcEEEEECCCC-----EEEEEeecCCccEEE--EEE--CCCCCEEEEecCCCeEEEEEeeecCCCCcccch
Confidence            56899999999999999887     677777778887554  445  6688899999999999999987543   33333


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      .        .+...+.++.+ +  .       ..+++++.++.+.+|+.          ...+..+. .+...+.++++.
T Consensus       101 ~--------~~~~~i~~~~~-~--~-------~~l~~~~~d~~i~~~d~----------~~~~~~~~-~~~~~v~~~~~~  151 (313)
T 3odt_A          101 I--------GHQGNVCSLSF-Q--D-------GVVISGSWDKTAKVWKE----------GSLVYNLQ-AHNASVWDAKVV  151 (313)
T ss_dssp             C--------CCSSCEEEEEE-E--T-------TEEEEEETTSEEEEEET----------TEEEEEEE-CCSSCEEEEEEE
T ss_pred             h--------hcccCEEEEEe-c--C-------CEEEEEeCCCCEEEEcC----------CcEEEecc-cCCCceeEEEEc
Confidence            3        34567777776 2  2       58999999999999981          11344444 577899999998


Q ss_pred             C-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154          172 I-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       172 ~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      | +++++++++.|+.|++||.  ......+...        +...+.+++|  +|++. +++++.|+.|++||+++++ +
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~--------~~~~i~~~~~--~~~~~-~~~~~~dg~i~i~d~~~~~-~  217 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQN--DKVIKTFSGI--------HNDVVRHLAV--VDDGH-FISCSNDGLIKLVDMHTGD-V  217 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEET--TEEEEEECSS--------CSSCEEEEEE--EETTE-EEEEETTSEEEEEETTTCC-E
T ss_pred             cCCCCEEEEEECCCCEEEEec--CceEEEEecc--------CcccEEEEEE--cCCCe-EEEccCCCeEEEEECCchh-h
Confidence            8 8999999999999999994  4455555441        1267999999  67777 9999999999999999865 5


Q ss_pred             eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          251 VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      +..+..|...|.+++|+|++ .|++++.|+.|++||+++++++..+..| ...|.+++|+|++. +++++.||.|++||+
T Consensus       218 ~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~  294 (313)
T 3odt_A          218 LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQ  294 (313)
T ss_dssp             EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred             hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence            88889999999999999999 6899999999999999999999999998 88999999999998 667899999999999


Q ss_pred             CCCceeeEEEe
Q 014154          331 KTRQLLSAVFL  341 (430)
Q Consensus       331 ~~~~~~~~~~~  341 (430)
                      ++++.+....+
T Consensus       295 ~~~~~~~~~~~  305 (313)
T 3odt_A          295 EKSRWASEDEI  305 (313)
T ss_dssp             CGGGCCC----
T ss_pred             CCCceeehhhh
Confidence            99887766433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.8e-33  Score=252.77  Aligned_cols=267  Identities=11%  Similarity=0.099  Sum_probs=215.7

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecC--CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc--ccee
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAI   91 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~--~~~~   91 (430)
                      .+++++ ||.|++|++..+.  ....+..+.  .|...  +.++.+  +|++++|++++.||.|++||+.+++.  ...+
T Consensus        65 ~l~~~~-dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~--v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  137 (337)
T 1gxr_A           65 HVYTGG-KGCVKVWDISHPG--NKSPVSQLDCLNRDNY--IRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL  137 (337)
T ss_dssp             EEEEEC-BSEEEEEETTSTT--CCSCSEEEECSCTTSB--EEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEEE
T ss_pred             EEEEcC-CCeEEEEECCCCC--ceeeeecccccCCCCc--EEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceeeec
Confidence            455665 9999999998752  112222333  56666  555556  77889999999999999999988763  3333


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      ..        +...+.++.+.+..        ..+++++.++.+.+|++....        .+..+. .|...|.+++|+
T Consensus       138 ~~--------~~~~i~~~~~~~~~--------~~l~~~~~dg~v~~~d~~~~~--------~~~~~~-~~~~~i~~~~~~  192 (337)
T 1gxr_A          138 TS--------SAPACYALAISPDS--------KVCFSCCSDGNIAVWDLHNQT--------LVRQFQ-GHTDGASCIDIS  192 (337)
T ss_dssp             EC--------SSSCEEEEEECTTS--------SEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEC
T ss_pred             cc--------CCCceEEEEECCCC--------CEEEEEeCCCcEEEEeCCCCc--------eeeeee-cccCceEEEEEC
Confidence            32        33467777776543        488999999999999975332        344443 467899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  251 (430)
                      |++++|++++.|+.|++||+++++.+..+...          ..+.+++|  +|++.+|++++.++.|++||+.+..  .
T Consensus       193 ~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~----------~~v~~~~~--s~~~~~l~~~~~~~~i~~~~~~~~~--~  258 (337)
T 1gxr_A          193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT----------SQIFSLGY--CPTGEWLAVGMESSNVEVLHVNKPD--K  258 (337)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEEEEECS----------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSSC--E
T ss_pred             CCCCEEEEEecCCcEEEEECCCCceEeeecCC----------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCC--e
Confidence            99999999999999999999998887766432          66899999  8999999999999999999999854  4


Q ss_pred             EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      ..+..|...|.+++|+|++++|++++.||.|++||+.+++.+.... | ...|.+++|+|++++|++++.||.|++|++
T Consensus       259 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~-~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E-SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec-C-CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            5678899999999999999999999999999999999998875544 4 789999999999999999999999999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.4e-35  Score=269.47  Aligned_cols=289  Identities=15%  Similarity=0.223  Sum_probs=223.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecC--CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWG--DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      ..+++++.++.|++|++..+  .....+..+.  .|...+..++++.+..++|++|++|+.||.|++||+.+++.+..+.
T Consensus        35 ~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~  112 (366)
T 3k26_A           35 PLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV  112 (366)
T ss_dssp             CEEEEEEETTEEEEEEECGG--GCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE
T ss_pred             ceEEEECCCCEEEEEEcCCC--cEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec
Confidence            44778888889999999975  1112222222  2557777777777655558899999999999999999998887776


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee--ecCCCceEEEEE
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKV  170 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~  170 (430)
                      .        +...+.++.+.+...       ..+++++.+|.+.+|++....        .+..+.  ..+...|.+++|
T Consensus       113 ~--------~~~~i~~~~~~~~~~-------~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A          113 G--------HGNAINELKFHPRDP-------NLLLSVSKDHALRLWNIQTDT--------LVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             S--------CCSCEEEEEECSSCT-------TEEEEEETTSCEEEEETTTTE--------EEEEECSTTSCSSCEEEEEE
T ss_pred             C--------CCCcEEEEEECCCCC-------CEEEEEeCCCeEEEEEeecCe--------EEEEecccccccCceeEEEE
Confidence            5        345888888876333       589999999999999985332        344442  357889999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC-------------------CCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          171 DISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-------------------PKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       171 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      +|++++|++++.|+.|++||+.+++....+...                   ........|...|.+++|  +  +.+|+
T Consensus       170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~  245 (366)
T 3k26_A          170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW--L--GDLIL  245 (366)
T ss_dssp             CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE--E--TTEEE
T ss_pred             CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE--c--CCEEE
Confidence            999999999999999999999876544322210                   000000114478999999  4  77999


Q ss_pred             EEeCCCcEEEEECCCCCc-------------ceEEEeecCCCeEEEEecCC--CCEEEEEeCCCcEEEEEccCCeE----
Q 014154          232 AGTNDHQVRLYDTSAQRR-------------PVMSFDFRETPIKAVAEEPD--SFNIYIGNGSGDLASVDIRTGKL----  292 (430)
Q Consensus       232 s~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~i~~~~~sp~--~~~l~~~~~d~~i~iwd~~~~~~----  292 (430)
                      +++.|+.|++||+.+...             .+..+..|...|.+++|+|+  +++|++|+.||.|++||+.+++.    
T Consensus       246 ~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  325 (366)
T 3k26_A          246 SKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK  325 (366)
T ss_dssp             EECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred             EEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence            999999999999987542             36778889999999999999  99999999999999999998763    


Q ss_pred             EeeeeCC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          293 LGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       293 ~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      ...+.+| +...|++++|+|++++|++++.||.|++||+.+
T Consensus       326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            3466665 258999999999999999999999999999853

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=272.89  Aligned_cols=311  Identities=14%  Similarity=0.144  Sum_probs=221.4

Q ss_pred             CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-----------ccceeeccCCC----CCCCCCCceEEEEEe
Q 014154           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-----------LRVAISNAGDS----GAQPEDDGIVGLHLF  112 (430)
Q Consensus        48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-----------~~~~~~~~~~~----~~~~~~~~i~~~~~~  112 (430)
                      +.+.  +.++.|  +|+|++||+|+.||.|+|||+.+++           ....+.+|...    ........|.++.|.
T Consensus        27 ~~~~--V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           27 EADI--ISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             GGGS--EEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             ccCc--EEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            4455  555556  7789999999999999999998776           24444443200    000001567788887


Q ss_pred             ecCcccccccCceEEEEccCCeeEEEEeeecCccc-----cCCC--------------------------cceEEeeecC
Q 014154          113 KRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSA-----ESSC--------------------------STVKSWNVCA  161 (430)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-----~~~~--------------------------~~i~~~~~~~  161 (430)
                      +....      ..+++++.|+.+++|++.......     ...+                          ...+.+...|
T Consensus       103 ~~~~~------~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  176 (447)
T 3dw8_B          103 PQKNA------AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH  176 (447)
T ss_dssp             CCCSS------SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred             CCCCc------ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence            65420      379999999999999987532100     0000                          1123444468


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQV  239 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i  239 (430)
                      ...|.+++|+|++++|++| .|+.|++||+.+. ..+..+.....  ....|...|.+++|  +|++ .+|++|+.||.|
T Consensus       177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~--~p~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPA--NMEELTEVITAAEF--HPNSCNTFVYSSSKGTI  251 (447)
T ss_dssp             SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCS--SGGGCCCCEEEEEE--CSSCTTEEEEEETTSCE
T ss_pred             CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccc--cccccCcceEEEEE--CCCCCcEEEEEeCCCeE
Confidence            8899999999999999998 7999999999843 33332211100  01123477999999  8888 999999999999


Q ss_pred             EEEECCCCCc---ceEEEeecCC------------CeEEEEecCCCCEEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCC
Q 014154          240 RLYDTSAQRR---PVMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGS  303 (430)
Q Consensus       240 ~iwd~~~~~~---~~~~~~~~~~------------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~  303 (430)
                      ++||++++..   .+..+..|..            .|.+++|+|++++|++++. +.|++||+++ ++++..+.+| ...
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~-~~~  329 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVH-EYL  329 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESC-GGG
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecc-ccc
Confidence            9999998653   1577888775            8999999999999999998 9999999997 8888888887 421


Q ss_pred             ---------------eEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee--------------------------
Q 014154          304 ---------------IRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK--------------------------  342 (430)
Q Consensus       304 ---------------v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------------  342 (430)
                                     +..++|+|++.+|++|+.||.|++||+.+++.+......                          
T Consensus       330 ~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (447)
T 3dw8_B          330 RSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEIS  409 (447)
T ss_dssp             TTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEE
T ss_pred             cccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccc
Confidence                           334999999999999999999999999998876421000                          


Q ss_pred             ---ccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          343 ---QHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       343 ---~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                         -.....+..++|+|++.+++.+..+.+.+|...
T Consensus       410 ~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~  445 (447)
T 3dw8_B          410 VDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK  445 (447)
T ss_dssp             GGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred             ccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence               011234688999999999554455568888643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.1e-34  Score=289.98  Aligned_cols=319  Identities=12%  Similarity=0.063  Sum_probs=253.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++|+.||.|+|||+.++     +.+..+..|...+..+++    +|+|++|++|+.||.|++||+.+++.+..+..+
T Consensus        26 ~~la~~~~~g~v~iwd~~~~-----~~~~~~~~~~~~v~~~~~----s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~   96 (814)
T 3mkq_A           26 PWVLTTLYSGRVEIWNYETQ-----VEVRSIQVTETPVRAGKF----IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH   96 (814)
T ss_dssp             SEEEEEETTSEEEEEETTTT-----EEEEEEECCSSCEEEEEE----EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             CEEEEEeCCCEEEEEECCCC-----ceEEEEecCCCcEEEEEE----eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence            46889999999999999987     788888899988655554    567889999999999999999999988877653


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-C
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-S  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~  173 (430)
                              ...+.++.+.+..        ..+++++.+|.+.+|++....       ..+..+. .|...|.+++|+| +
T Consensus        97 --------~~~v~~~~~s~~~--------~~l~~~~~dg~i~vw~~~~~~-------~~~~~~~-~~~~~v~~~~~~p~~  152 (814)
T 3mkq_A           97 --------PDYIRSIAVHPTK--------PYVLSGSDDLTVKLWNWENNW-------ALEQTFE-GHEHFVMCVAFNPKD  152 (814)
T ss_dssp             --------SSCEEEEEECSSS--------SEEEEEETTSEEEEEEGGGTS-------EEEEEEE-CCSSCEEEEEEETTE
T ss_pred             --------CCCEEEEEEeCCC--------CEEEEEcCCCEEEEEECCCCc-------eEEEEEc-CCCCcEEEEEEEcCC
Confidence                    4578877776654        389999999999999986432       1333443 6778999999999 8


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      ++.|++++.||.|++||+.++.....+..+.        ...+.+++|.+.+++.+|++++.||.|++||+.++. ++..
T Consensus       153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~-~~~~  223 (814)
T 3mkq_A          153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS-CVAT  223 (814)
T ss_dssp             EEEEEEEETTSEEEEEETTCSSCSEEEECCC--------TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE-EEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcceeEEecCC--------CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc-EEEE
Confidence            8999999999999999998877766655432        256889999433499999999999999999999865 5788


Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCe-EEEEeCCCcEEEEECCC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI-IASCGLDSYLRFWDIKT  332 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~s~~~dg~i~iwd~~~  332 (430)
                      +.+|...|.+++|+|++++|++++.||.|++||+.+++.+..+..+ ...+.+++|+|++.. +++++.|+.+.+|++..
T Consensus       224 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-SSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence            8899999999999999999999999999999999999999999988 889999999999863 24444567789998765


Q ss_pred             CceeeEEEee----------------------------------------ccccceEEeeeccccccccccCCCCceEec
Q 014154          333 RQLLSAVFLK----------------------------------------QHLNEVVFDSAFADKEVANAAADAPMLEIQ  372 (430)
Q Consensus       333 ~~~~~~~~~~----------------------------------------~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~  372 (430)
                      ......+...                                        .+....+.+++|+|+|++++.+.++.+.+|
T Consensus       303 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~  382 (814)
T 3mkq_A          303 DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIY  382 (814)
T ss_dssp             CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEE
T ss_pred             CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEE
Confidence            4322211000                                        111223578899999988444448889998


Q ss_pred             CCCC
Q 014154          373 NGND  376 (430)
Q Consensus       373 ~~~~  376 (430)
                      +...
T Consensus       383 ~~~~  386 (814)
T 3mkq_A          383 TALA  386 (814)
T ss_dssp             ETTT
T ss_pred             ECcc
Confidence            8654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.7e-34  Score=262.03  Aligned_cols=279  Identities=11%  Similarity=0.089  Sum_probs=223.8

Q ss_pred             cceeeecCCCceEEEEccCCCCCcce--eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPK--VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      ..+++++.||.|++|++..+     +  .+..+.+|...+..++  +  +|++++|++++.||.|++||+.+++....+.
T Consensus        21 ~~l~~~~~d~~v~i~~~~~~-----~~~~~~~~~~h~~~v~~~~--~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~   91 (372)
T 1k8k_C           21 TQIAICPNNHEVHIYEKSGN-----KWVQVHELKEHNGQVTGVD--W--APDSNRIVTCGTDRNAYVWTLKGRTWKPTLV   91 (372)
T ss_dssp             SEEEEECSSSEEEEEEEETT-----EEEEEEEEECCSSCEEEEE--E--ETTTTEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEeCCCC-----cEEeeeeecCCCCcccEEE--E--eCCCCEEEEEcCCCeEEEEECCCCeeeeeEE
Confidence            46788889999999999986     4  7778888988855554  4  5678899999999999999998776544433


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      .      ..+...+.++.+.+..        ..+++++.++.+.+|++.....     ..........|...|.+++|+|
T Consensus        92 ~------~~~~~~v~~~~~~~~~--------~~l~~~~~d~~v~i~d~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~  152 (372)
T 1k8k_C           92 I------LRINRAARCVRWAPNE--------KKFAVGSGSRVISICYFEQEND-----WWVCKHIKKPIRSTVLSLDWHP  152 (372)
T ss_dssp             C------CCCSSCEEEEEECTTS--------SEEEEEETTSSEEEEEEETTTT-----EEEEEEECTTCCSCEEEEEECT
T ss_pred             e------ecCCCceeEEEECCCC--------CEEEEEeCCCEEEEEEecCCCc-----ceeeeeeecccCCCeeEEEEcC
Confidence            2      1234577777776543        4899999999999999875431     0113333345678999999999


Q ss_pred             CCCEEEEEeCCCeEEEEECC------------------CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154          173 SEKFSLFGGKGVEVNVWDLD------------------KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  234 (430)
                      ++++|++++.|+.|++||+.                  .++.+..+..+.         ..|.+++|  +|++.+|++++
T Consensus       153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~  221 (372)
T 1k8k_C          153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---------GWVHGVCF--SANGSRVAWVS  221 (372)
T ss_dssp             TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---------SCEEEEEE--CSSSSEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC---------CeEEEEEE--CCCCCEEEEEe
Confidence            99999999999999999954                  556666665543         67999999  89999999999


Q ss_pred             CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC--CeE--E-----------------
Q 014154          235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKL--L-----------------  293 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~--~~~--~-----------------  293 (430)
                      .|+.|++||+++++ ++..+..|...|.+++|+|++.+|++| .|+.|++||+++  ++.  +                 
T Consensus       222 ~d~~i~i~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (372)
T 1k8k_C          222 HDSTVCLADADKKM-AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTAR  299 (372)
T ss_dssp             TTTEEEEEEGGGTT-EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHH
T ss_pred             CCCEEEEEECCCCc-eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchh
Confidence            99999999999865 588889999999999999999988887 899999999988  431  0                 


Q ss_pred             -------------------eee-eCCCCCCeEEEEec-CCC---CeEEEEeCCCcEEEEECCCCce
Q 014154          294 -------------------GCF-IGKCSGSIRSIARH-PTL---PIIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       294 -------------------~~~-~~~~~~~v~~i~~~-~~~---~~l~s~~~dg~i~iwd~~~~~~  335 (430)
                                         ..+ .+| ...|++++|+ +++   .+|++|+.||.|++||+.+++.
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~  364 (372)
T 1k8k_C          300 ERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES  364 (372)
T ss_dssp             HHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred             hhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence                               233 366 8899999976 666   8999999999999999987553

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.9e-33  Score=274.67  Aligned_cols=311  Identities=13%  Similarity=0.063  Sum_probs=247.5

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC-cceeeeeecCCC--CCceeEEeecCCeEEEecCCCC----
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQ--NDPLLAVARKNGLTDILNPLNG----   85 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p--~g~~l~~g~~dg~i~iwd~~~~----   85 (430)
                      |..+++..+.++.|+||++.++ ....+....+.+|... +..+++    +|  ++++|++|+.||.|+|||+.++    
T Consensus        28 pdg~~l~~~~~~~v~v~~~~~~-~~~~~~~~~~~~h~~~~v~~~~~----sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~  102 (615)
T 1pgu_A           28 PTTNAIAYPCGKSAFVRCLDDG-DSKVPPVVQFTGHGSSVVTTVKF----SPIKGSQYLCSGDESGKVIVWGWTFDKESN  102 (615)
T ss_dssp             TTTTEEEEEETTEEEEEECCSS-CCSSCSEEEECTTTTSCEEEEEE----CSSTTCCEEEEEETTSEEEEEEEEEEGGGT
T ss_pred             CCCCEEEEecCCeEEEEECCCC-CCccccceEEecCCCceEEEEEE----CcCCCCCEEEEecCCCEEEEEeCCCCcccc
Confidence            3344444344899999999864 1112356678888887 766665    56  8889999999999999999755    


Q ss_pred             ----cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC----CeeEEEEeeecCccccCCCcceEEe
Q 014154           86 ----DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSW  157 (430)
Q Consensus        86 ----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~i~~~  157 (430)
                          +.+..+..        +...+.++.+.+..        ..+++++.+    +.+.+|+.  .        ..+..+
T Consensus       103 ~~~~~~~~~~~~--------~~~~v~~~~~s~~~--------~~l~~~~~~~~~~~~v~~~d~--~--------~~~~~~  156 (615)
T 1pgu_A          103 SVEVNVKSEFQV--------LAGPISDISWDFEG--------RRLCVVGEGRDNFGVFISWDS--G--------NSLGEV  156 (615)
T ss_dssp             EEEEEEEEEEEC--------CSSCEEEEEECTTS--------SEEEEEECCSSCSEEEEETTT--C--------CEEEEC
T ss_pred             cccccccchhhc--------ccccEEEEEEeCCC--------CEEEEeccCCCCccEEEEEEC--C--------Ccceee
Confidence                44444433        34578877776544        377777766    56777751  1        134444


Q ss_pred             eecCCCceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCc---ceeEEEEeecCC-CCEEEE
Q 014154          158 NVCASGTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT---WFTSAAFLSIDD-HRKFVA  232 (430)
Q Consensus       158 ~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~-~~~l~s  232 (430)
                      . .|...|.+++|+|+++ ++++++.|+.|++||+.+++.+..+..+.         .   .|.+++|  +|+ +++|++
T Consensus       157 ~-~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~---------~~~~~v~~~~~--~~~~~~~l~~  224 (615)
T 1pgu_A          157 S-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH---------KQGSFVRDVEF--SPDSGEFVIT  224 (615)
T ss_dssp             C-SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS---------CTTCCEEEEEE--CSTTCCEEEE
T ss_pred             e-cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccC---------CCCceEEEEEE--CCCCCCEEEE
Confidence            3 5778999999999997 89999999999999999999988887764         4   7999999  889 999999


Q ss_pred             EeCCCcEEEEECCCCCcceEEE-e---ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC---CCCCeE
Q 014154          233 GTNDHQVRLYDTSAQRRPVMSF-D---FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIR  305 (430)
Q Consensus       233 ~~~dg~i~iwd~~~~~~~~~~~-~---~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~  305 (430)
                      ++.|+.|++||+.+++ .+..+ .   .|...|.+++|+ ++.+|++++.|+.|++||+++++.+..+..+   ....+.
T Consensus       225 ~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  302 (615)
T 1pgu_A          225 VGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV  302 (615)
T ss_dssp             EETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred             EeCCCeEEEEECCCCC-EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence            9999999999999866 46677 5   899999999999 9999999999999999999999999888865   136788


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      ++.|+ ++.++++++.||.|++||+.+++.+..  +.+| ...|.+++| |+  +++++.|+.|++|+..
T Consensus       303 ~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~--~~~~-~~~v~~~~~-~~--l~~~~~dg~i~~w~~~  365 (615)
T 1pgu_A          303 GVVAT-GNGRIISLSLDGTLNFYELGHDEVLKT--ISGH-NKGITALTV-NP--LISGSYDGRIMEWSSS  365 (615)
T ss_dssp             EEEEE-ETTEEEEEETTSCEEEEETTEEEEEEE--ECCC-SSCEEEEET-TT--TEEEETTSCEEETTTT
T ss_pred             EEEeC-CCCeEEEEECCCCEEEEECCCCcEEEE--EeCC-CCCEEEEEe-cC--cEEECCCCeEEEEEch
Confidence            88886 889999999999999999999888876  5666 455688888 77  7777888888888764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.6e-33  Score=285.70  Aligned_cols=292  Identities=15%  Similarity=0.183  Sum_probs=244.6

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      ++...+.+|...+.  +++|  +|+|++||+|+.||.|+|||+.+++.+..+..+        ...+.++.|.+..    
T Consensus         4 ~~~~~~~~h~~~v~--~i~~--sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~--------~~~v~~~~~s~~~----   67 (814)
T 3mkq_A            4 DIKKTFSNRSDRVK--GIDF--HPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVT--------ETPVRAGKFIARK----   67 (814)
T ss_dssp             CCEEEEEEECSCEE--EEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEEECC--------SSCEEEEEEEGGG----
T ss_pred             ccceeeecCCCceE--EEEE--CCCCCEEEEEeCCCEEEEEECCCCceEEEEecC--------CCcEEEEEEeCCC----
Confidence            34566788888855  4555  778999999999999999999999888877653        4578888877654    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeE
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIW  198 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~  198 (430)
                          ..+++++.+|.+.+|++....        .+..+. .|...|.+++|+|++++|++++.||.|++||+.++ ....
T Consensus        68 ----~~l~~~~~dg~i~vw~~~~~~--------~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~  134 (814)
T 3mkq_A           68 ----NWIIVGSDDFRIRVFNYNTGE--------KVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ  134 (814)
T ss_dssp             ----TEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE
T ss_pred             ----CEEEEEeCCCeEEEEECCCCc--------EEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence                489999999999999975332        444444 57889999999999999999999999999999876 5555


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecC--CCCEEE
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEP--DSFNIY  274 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp--~~~~l~  274 (430)
                      .+..+.         ..|.+++|  +| ++..|++++.||.|++||+.++.. ...+.. +...+.+++|+|  ++.+|+
T Consensus       135 ~~~~~~---------~~v~~~~~--~p~~~~~l~~~~~dg~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~  202 (814)
T 3mkq_A          135 TFEGHE---------HFVMCVAF--NPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDKPYMI  202 (814)
T ss_dssp             EEECCS---------SCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred             EEcCCC---------CcEEEEEE--EcCCCCEEEEEeCCCeEEEEECCCCcc-eeEEecCCCCCEEEEEEEECCCCCEEE
Confidence            555554         67999999  77 788999999999999999988664 445544 448999999999  999999


Q ss_pred             EEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeec
Q 014154          275 IGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF  354 (430)
Q Consensus       275 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  354 (430)
                      +++.||.|++||+++++.+..+.+| ...|.+++|+|++.+|++++.||.|++||+.+++.+..  +..+ ...+++++|
T Consensus       203 ~~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~--~~~~-~~~v~~~~~  278 (814)
T 3mkq_A          203 TASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT--LNVG-LERSWCIAT  278 (814)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEE--ECCS-SSSEEEEEE
T ss_pred             EEeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--eecC-CCcEEEEEE
Confidence            9999999999999999999999998 88999999999999999999999999999999998887  4455 445799999


Q ss_pred             ccccc--ccccCCCCceEecCCCC
Q 014154          355 ADKEV--ANAAADAPMLEIQNGND  376 (430)
Q Consensus       355 s~~g~--~~~~~~d~~i~~~~~~~  376 (430)
                      +|+|.  +++++.++.+.+|+...
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          279 HPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             CTTCGGGEEEEEETTEEEEEECSC
T ss_pred             ccCCCceEEEEEeCCCEEEEEcCC
Confidence            99987  36677788888887654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-35  Score=270.92  Aligned_cols=244  Identities=9%  Similarity=0.043  Sum_probs=188.2

Q ss_pred             CCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC--cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154           48 PHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG--DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (430)
Q Consensus        48 ~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  125 (430)
                      +...|.+  +.+  +|+|++||+|+.||.|+|||+.++  +.+..+.+        +...+.++.+.+..        ..
T Consensus        10 ~~~~v~~--~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~s~~~--------~~   69 (377)
T 3dwl_C           10 LPKPSYE--HAF--NSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD--------HDKIVTCVDWAPKS--------NR   69 (377)
T ss_dssp             CSSCCSC--CEE--CSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC--------CSSCEEEEEECTTT--------CC
T ss_pred             CCCcEEE--EEE--CCCCCEEEEecCCCEEEEEEccCCceEEEEEEec--------CCceEEEEEEeCCC--------CE
Confidence            4456544  444  678889999999999999999877  55555543        45688888876654        48


Q ss_pred             EEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEeeCC
Q 014154          126 LLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---IWTAKP  202 (430)
Q Consensus       126 ~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~  202 (430)
                      +++++.++.+++|++.....     -..+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++.   ...+..
T Consensus        70 l~s~s~d~~v~vwd~~~~~~-----~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  143 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGT-----WKQTLVL-LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR  143 (377)
T ss_dssp             EEEEETTSSEEEC------C-----CCCEEEC-CCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred             EEEEeCCCeEEEEEcCCCCc-----eeeeeEe-cccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec
Confidence            99999999999999865420     0112222 35778999999999999999999999999999988763   455544


Q ss_pred             -CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC-----------------CcceEEEeecCCCeEEE
Q 014154          203 -PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ-----------------RRPVMSFDFRETPIKAV  264 (430)
Q Consensus       203 -~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~i~~~  264 (430)
                       |.         ..|.+++|  +|++.+|++++.|+.|++||+...                 ..++..+ .|...|.++
T Consensus       144 ~h~---------~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~  211 (377)
T 3dwl_C          144 PLR---------STILSLDW--HPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV  211 (377)
T ss_dssp             SCC---------SCEEEEEE--CTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE
T ss_pred             ccC---------CCeEEEEE--cCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE
Confidence             33         77999999  899999999999999999998531                 1234445 788999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEccCCeE----EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          265 AEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       265 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      +|+|++++|++++.|+.|++||+++++.    +..+.+| ...|.+++|+|++.+|++++.|+.+ +|+..
T Consensus       212 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          212 GFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             EECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            9999999999999999999999999887    7888888 8899999999999999998876655 77664

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=5.5e-34  Score=268.00  Aligned_cols=270  Identities=14%  Similarity=0.219  Sum_probs=220.4

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      ....+++|+.||.|++||+.++     +....+.+|...+.++  .+    ++++|++|+.||.|++||+.+++.+..+.
T Consensus       142 d~~~l~~g~~dg~i~iwd~~~~-----~~~~~~~~h~~~v~~l--~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  210 (435)
T 1p22_A          142 DDQKIVSGLRDNTIKIWDKNTL-----ECKRILTGHTGSVLCL--QY----DERVIITGSSDSTVRVWDVNTGEMLNTLI  210 (435)
T ss_dssp             CSSEEEEEESSSCEEEEESSSC-----CEEEEECCCSSCEEEE--EC----CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred             CCCEEEEEeCCCeEEEEeCCCC-----eEEEEEcCCCCcEEEE--EE----CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence            4467899999999999999987     7788889999885544  44    45699999999999999999998887776


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI  172 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~  172 (430)
                      .+        ...+.++.+.   .       +.+++++.+|.+.+|++.....      .........|...|.++++  
T Consensus       211 ~h--------~~~v~~l~~~---~-------~~l~s~s~dg~i~vwd~~~~~~------~~~~~~~~~~~~~v~~~~~--  264 (435)
T 1p22_A          211 HH--------CEAVLHLRFN---N-------GMMVTCSKDRSIAVWDMASPTD------ITLRRVLVGHRAAVNVVDF--  264 (435)
T ss_dssp             CC--------CSCEEEEECC---T-------TEEEEEETTSCEEEEECSSSSC------CEEEEEECCCSSCEEEEEE--
T ss_pred             CC--------CCcEEEEEEc---C-------CEEEEeeCCCcEEEEeCCCCCC------ceeeeEecCCCCcEEEEEe--
Confidence            53        4477766653   2       5899999999999999864331      0111223367789999999  


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  252 (430)
                      ++++|++|+.||.|++||+.+++.+..+..+.         ..|.++.|    ++.+|++|+.||.|++||++++. ++.
T Consensus       265 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~g~~dg~i~iwd~~~~~-~~~  330 (435)
T 1p22_A          265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIECGA-CLR  330 (435)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECCS---------SCEEEEEE----ETTEEEEEETTSCEEEEETTTCC-EEE
T ss_pred             CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC---------CcEEEEEe----CCCEEEEEeCCCeEEEEECCCCC-EEE
Confidence            78899999999999999999999988887765         67888888    46899999999999999999865 588


Q ss_pred             EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe---------EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK---------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                      .+.+|...|.+++|  ++.+|++|+.||.|++||+++++         ++..+.+| ...|.+++|  ++.+|++++.||
T Consensus       331 ~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~s~s~Dg  405 (435)
T 1p22_A          331 VLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQF--DEFQIVSSSHDD  405 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEE--CSSCEEECCSSS
T ss_pred             EEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC-CCCeEEEEe--CCCEEEEEeCCC
Confidence            89999999999999  67899999999999999998766         78888888 899999999  788899999999


Q ss_pred             cEEEEECCCCceeeE
Q 014154          324 YLRFWDIKTRQLLSA  338 (430)
Q Consensus       324 ~i~iwd~~~~~~~~~  338 (430)
                      .|++||+.+......
T Consensus       406 ~i~iwd~~~~~~~~~  420 (435)
T 1p22_A          406 TILIWDFLNDPAAQA  420 (435)
T ss_dssp             EEEEEC---------
T ss_pred             EEEEEECCCCCCccc
Confidence            999999988766554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.2e-35  Score=262.84  Aligned_cols=250  Identities=13%  Similarity=0.101  Sum_probs=193.7

Q ss_pred             ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccC
Q 014154           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRS  123 (430)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  123 (430)
                      .+.+|...|..++|    +|+|++||+|+.|++|+|||+.++...                                   
T Consensus         8 ~~~~H~~~V~~v~~----s~~g~~lasgs~D~~v~lwd~~~~~~~-----------------------------------   48 (316)
T 3bg1_A            8 VDTSHEDMIHDAQM----DYYGTRLATCSSDRSVKIFDVRNGGQI-----------------------------------   48 (316)
T ss_dssp             ------CCEEEEEE----CGGGCEEEEEETTTEEEEEEEETTEEE-----------------------------------
T ss_pred             ecccccCeEEEeeE----cCCCCEEEEEeCCCeEEEEEecCCCcE-----------------------------------
Confidence            45678888665555    567889999999999999997543210                                   


Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe--eeEe
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCE--KIWT  199 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~--~~~~  199 (430)
                        +                           +..+ ..|...|.+++|++  ++++|++|+.|++|++||++++.  ....
T Consensus        49 --~---------------------------~~~l-~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~   98 (316)
T 3bg1_A           49 --L---------------------------IADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE   98 (316)
T ss_dssp             --E---------------------------EEEE-ECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE
T ss_pred             --E---------------------------EEEE-cCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE
Confidence              0                           0011 14667889999976  48999999999999999998763  4555


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEEEEECCCCCc--ceEEEeecCCCeEEEEecCC------
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEPD------  269 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~sp~------  269 (430)
                      +..|.         ..|.+++|  +|+  +.+|++|+.|+.|++||++....  ....+.+|...|.+++|+|+      
T Consensus        99 ~~~h~---------~~V~~v~~--~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           99 HAGHD---------SSVNSVCW--APHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             ECCCS---------SCCCEEEE--CCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             ccCCC---------CceEEEEE--CCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            55554         67999999  665  78999999999999999987532  13445678889999999997      


Q ss_pred             -----------CCEEEEEeCCCcEEEEEccCC---eEEeeeeCCCCCCeEEEEecCCC----CeEEEEeCCCcEEEEECC
Q 014154          270 -----------SFNIYIGNGSGDLASVDIRTG---KLLGCFIGKCSGSIRSIARHPTL----PIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       270 -----------~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~v~~i~~~~~~----~~l~s~~~dg~i~iwd~~  331 (430)
                                 +++|++|+.|+.|++||++..   +++..+.+| ...|.+++|+|++    .+|++++.|++|+||++.
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h-~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~  246 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH-SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD  246 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC-SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccC-CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence                       478999999999999999765   467788888 8999999999986    789999999999999998


Q ss_pred             CCc---eeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          332 TRQ---LLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       332 ~~~---~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +..   ..... +.+| ...|++++|+|+|.+ ++++.|+.|++|+...
T Consensus       247 ~~~~~~~~~~~-~~~~-~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          247 DASSNTWSPKL-LHKF-NDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             STTCCCCBCCE-EEEC-SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             Cccccchhhhh-hhcC-CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            631   11111 3445 556899999999998 8899999999998753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.9e-33  Score=263.29  Aligned_cols=294  Identities=12%  Similarity=0.141  Sum_probs=230.8

Q ss_pred             eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      ....+.+|...+. .++.+    ++++|++|+.||.|++||+.+++.+..+.+        +...+.++.+.+.      
T Consensus       113 ~~~~l~~h~~~v~-~~~~~----~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~--------h~~~V~~l~~~~~------  173 (464)
T 3v7d_B          113 QRTTLRGHMTSVI-TCLQF----EDNYVITGADDKMIRVYDSINKKFLLQLSG--------HDGGVWALKYAHG------  173 (464)
T ss_dssp             EEEEEECCSSSCE-EEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECC--------CSSCEEEEEECST------
T ss_pred             ceEEEcCCCCCcE-EEEEE----CCCEEEEEcCCCcEEEEECCCCcEEEEEeC--------CCcCEEEEEEcCC------
Confidence            4557788888752 24444    346899999999999999999998887765        3458888777432      


Q ss_pred             ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc--CCCCEEEEEeCCCeEEEEECCCCeeeE
Q 014154          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKGVEVNVWDLDKCEKIW  198 (430)
Q Consensus       121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~  198 (430)
                         +.+++++.+|.+.+|++....        .+..+. .|...|.+++|+  +++++|++++.|+.|++||+.++....
T Consensus       174 ---~~l~s~s~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~  241 (464)
T 3v7d_B          174 ---GILVSGSTDRTVRVWDIKKGC--------CTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  241 (464)
T ss_dssp             ---TEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred             ---CEEEEEeCCCCEEEEECCCCc--------EEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence               489999999999999975332        444444 578899999998  578999999999999999998765432


Q ss_pred             eeCCCCCC--------------CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEE
Q 014154          199 TAKPPPKN--------------SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV  264 (430)
Q Consensus       199 ~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~  264 (430)
                      ........              .....|...+.++.    +++.+|++++.|+.|++||+++++ ++..+.+|...|.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~  316 (464)
T 3v7d_B          242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYST  316 (464)
T ss_dssp             -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEE
T ss_pred             cccccCCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEE
Confidence            21110000              00011224455553    478899999999999999999855 588889999999999


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc
Q 014154          265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH  344 (430)
Q Consensus       265 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  344 (430)
                      +|+|++++|++|+.|+.|++||+++++++..+.+| ...|.++.|+  +.+|++++.||.|++||+.++......    +
T Consensus       317 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h-~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~----~  389 (464)
T 3v7d_B          317 IYDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY----H  389 (464)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE----E
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC-CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee----c
Confidence            99999999999999999999999999999999998 8999999997  579999999999999999988776553    2


Q ss_pred             ccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154          345 LNEVVFDSAFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       345 ~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                      ....+..++|++++.+++++.|+.|++|+....
T Consensus       390 ~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g  422 (464)
T 3v7d_B          390 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSG  422 (464)
T ss_dssp             CTTCCCEEEEEECSSEEEEEETTEEEEEETTTC
T ss_pred             CCCCccEEEEEeCCCEEEEecCCeEEEEECCCC
Confidence            244567889999999954455999999998764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=257.70  Aligned_cols=282  Identities=13%  Similarity=0.087  Sum_probs=212.1

Q ss_pred             eeeecC---CCceEEEEccCCCCCcceeeee-cCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc-cccee
Q 014154           17 ALTFDS---LGLIKVIEARGEHGGVPKVVER-WGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD-LRVAI   91 (430)
Q Consensus        17 l~t~~~---dg~i~vw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~-~~~~~   91 (430)
                      +++|+.   ||.|+||++..+     +.... ..+|...+..++++.+ .|+|++|++|+.||.|++||+.+++ .+..+
T Consensus        34 ~~~~s~~~~d~~v~iw~~~~~-----~~~~~~~~~~~~~v~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  107 (357)
T 3i2n_A           34 VTMGNFARGTGVIQLYEIQHG-----DLKLLREIEKAKPIKCGTFGAT-SLQQRYLATGDFGGNLHIWNLEAPEMPVYSV  107 (357)
T ss_dssp             EEEEC--CCCEEEEEEEECSS-----SEEEEEEEEESSCEEEEECTTC-CTTTCCEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred             EEecCccCCCcEEEEEeCCCC-----cccceeeecccCcEEEEEEcCC-CCCCceEEEecCCCeEEEEeCCCCCccEEEE
Confidence            445655   999999999986     33222 2257777555444331 1227899999999999999999887 66665


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC---CCceEEE
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA---SGTIAFS  168 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~---~~~i~~~  168 (430)
                      ..        +...+.++.+.+.-...  .....+++++.++.+.+|++.....       .+..+....   ...+.++
T Consensus       108 ~~--------~~~~v~~~~~~~~~~~s--~~~~~l~~~~~d~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~v~~~  170 (357)
T 3i2n_A          108 KG--------HKEIINAIDGIGGLGIG--EGAPEIVTGSRDGTVKVWDPRQKDD-------PVANMEPVQGENKRDCWTV  170 (357)
T ss_dssp             CC--------CSSCEEEEEEESGGGCC---CCCEEEEEETTSCEEEECTTSCSS-------CSEEECCCTTSCCCCEEEE
T ss_pred             Ee--------cccceEEEeeccccccC--CCccEEEEEeCCCeEEEEeCCCCCC-------cceeccccCCCCCCceEEE
Confidence            54        34578877664310000  0115899999999999999764321       344443222   2378888


Q ss_pred             E----EcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC---CCCEEEEEeCCCcEEE
Q 014154          169 K----VDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID---DHRKFVAGTNDHQVRL  241 (430)
Q Consensus       169 ~----~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~s~~~dg~i~i  241 (430)
                      +    |+|++++|++++.|+.|++||+++++...... +         ...|.+++|  +|   ++.+|++++.||.|++
T Consensus       171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~---------~~~v~~~~~--~~~~~~~~~l~~~~~dg~i~i  238 (357)
T 3i2n_A          171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I---------KNGVCSLEF--DRKDISMNKLVATSLEGKFHV  238 (357)
T ss_dssp             EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C---------SSCEEEEEE--SCSSSSCCEEEEEESTTEEEE
T ss_pred             EEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-C---------CCceEEEEc--CCCCCCCCEEEEECCCCeEEE
Confidence            8    78899999999999999999999988755432 2         267999999  78   8999999999999999


Q ss_pred             EECCCCCcceEE-----EeecCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccCC-------------------eEEeee
Q 014154          242 YDTSAQRRPVMS-----FDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTG-------------------KLLGCF  296 (430)
Q Consensus       242 wd~~~~~~~~~~-----~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~-------------------~~~~~~  296 (430)
                      ||++++.. ...     +..|...|++++|+|++. +|++++.||.|++||++++                   +.+..+
T Consensus       239 ~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  317 (357)
T 3i2n_A          239 FDMRTQHP-TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV  317 (357)
T ss_dssp             EEEEEEET-TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE
T ss_pred             EeCcCCCc-ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc
Confidence            99987442 333     348999999999999998 8999999999999999854                   467778


Q ss_pred             eCCCCCCeEEEEecCCCCeEE-EEeCCCcEEEEECCCCce
Q 014154          297 IGKCSGSIRSIARHPTLPIIA-SCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       297 ~~~~~~~v~~i~~~~~~~~l~-s~~~dg~i~iwd~~~~~~  335 (430)
                      .+| ...|++++|+|++++|+ +++.||.|+|||+.+.+.
T Consensus       318 ~~~-~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          318 TLS-TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             ECC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             ccC-CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            888 89999999999999998 899999999999987654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.6e-33  Score=262.06  Aligned_cols=282  Identities=14%  Similarity=0.096  Sum_probs=218.1

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .+++++.||.|+||++... ......+..+.+|...|.  ++.|  +| ++++|++|+.||.|+|||+.++........ 
T Consensus        49 ~~~~~~~~g~i~v~~~~~~-~~~~~~~~~~~~h~~~V~--~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~-  122 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKT-GRVDKNVPLVCGHTAPVL--DIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLRE-  122 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCC-EECCTTCCCBCCCSSCEE--EEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCS-
T ss_pred             EEEEEcCCCEEEEEECccC-CCCCCCCceEecCCCCEE--EEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCccccCC-
Confidence            3446889999999999663 122234456778988855  4445  66 778999999999999999977653221100 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                                                                                .+..+. .|...|.+++|+|++
T Consensus       123 ----------------------------------------------------------~~~~~~-~h~~~v~~~~~~p~~  143 (402)
T 2aq5_A          123 ----------------------------------------------------------PVITLE-GHTKRVGIVAWHPTA  143 (402)
T ss_dssp             ----------------------------------------------------------CSEEEE-CCSSCEEEEEECSSB
T ss_pred             ----------------------------------------------------------ceEEec-CCCCeEEEEEECcCC
Confidence                                                                      111222 466889999999997


Q ss_pred             -CEEEEEeCCCeEEEEECCCCeeeEee--CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154          175 -KFSLFGGKGVEVNVWDLDKCEKIWTA--KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       175 -~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  251 (430)
                       ++|++++.|+.|++||+.+++.+..+  ..+.         ..|.+++|  +|++.+|++++.|+.|++||++++. .+
T Consensus       144 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~-~~  211 (402)
T 2aq5_A          144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP---------DTIYSVDW--SRDGALICTSCRDKRVRVIEPRKGT-VV  211 (402)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECTTTCC---------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTE-EE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCccEEEecCCCC---------CceEEEEE--CCCCCEEEEEecCCcEEEEeCCCCc-ee
Confidence             79999999999999999999998888  4544         77999999  8899999999999999999999865 46


Q ss_pred             EEE-eecCCC-eEEEEecCCCCEEEEE---eCCCcEEEEEccCCeE-EeeeeCCCCCCeEEEEecCCCCeEEE-EeCCCc
Q 014154          252 MSF-DFRETP-IKAVAEEPDSFNIYIG---NGSGDLASVDIRTGKL-LGCFIGKCSGSIRSIARHPTLPIIAS-CGLDSY  324 (430)
Q Consensus       252 ~~~-~~~~~~-i~~~~~sp~~~~l~~~---~~d~~i~iwd~~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s-~~~dg~  324 (430)
                      ..+ ..|... +.++.|+|++.+|++|   +.|+.|++||+++++. +......+...+.+++|+|++.+|++ ++.||.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~  291 (402)
T 2aq5_A          212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS  291 (402)
T ss_dssp             EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred             eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence            666 678765 8999999999999999   7899999999998764 33333222678999999999999865 557999


Q ss_pred             EEEEECCCCce-eeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          325 LRFWDIKTRQL-LSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       325 i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      |++||+.+++. +..+....+ ...+.+++|+|++.++++ .++.+++|+...
T Consensus       292 i~i~d~~~~~~~~~~l~~~~~-~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~  342 (402)
T 2aq5_A          292 IRYFEITSEAPFLHYLSMFSS-KESQRGMGYMPKRGLEVN-KCEIARFYKLHE  342 (402)
T ss_dssp             EEEEEECSSTTCEEEEEEECC-SSCCSEEEECCGGGSCGG-GTEEEEEEEEET
T ss_pred             EEEEEecCCCcceEeeccccc-CCcccceEEeccccccee-cceeEEEEEcCC
Confidence            99999999884 444322222 456799999999998443 456999999865

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3e-33  Score=258.48  Aligned_cols=269  Identities=14%  Similarity=0.126  Sum_probs=210.0

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeec--CCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCCCccccee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERW--GDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAI   91 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~   91 (430)
                      ..+++|+.||.|+|||+..+     +....+  .+|...+..  +.|  +| ++++|++++.||.|++||+.. ..+..+
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~h~~~v~~--~~~--~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~  156 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQ-----NKTSFIQGMGPGDAITG--MKF--NQFNTNQLFVSSIRGATTLRDFSG-SVIQVF  156 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTST-----TCEEEECCCSTTCBEEE--EEE--ETTEEEEEEEEETTTEEEEEETTS-CEEEEE
T ss_pred             CEEEEEcCCCeEEEEeCCCc-----ccceeeecCCcCCceeE--EEe--CCCCCCEEEEEeCCCEEEEEECCC-CceEEE
Confidence            47999999999999999975     333333  357777554  444  55 568999999999999999974 444444


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      ..+     ..+...+.++.+.+..        ..+++++.++.+.+|++..         ..+..+. .|...|.+++|+
T Consensus       157 ~~~-----~~~~~~v~~~~~~~~~--------~~l~~~~~d~~i~i~d~~~---------~~~~~~~-~h~~~v~~~~~~  213 (383)
T 3ei3_B          157 AKT-----DSWDYWYCCVDVSVSR--------QMLATGDSTGRLLLLGLDG---------HEIFKEK-LHKAKVTHAEFN  213 (383)
T ss_dssp             ECC-----CCSSCCEEEEEEETTT--------TEEEEEETTSEEEEEETTS---------CEEEEEE-CSSSCEEEEEEC
T ss_pred             ecc-----CCCCCCeEEEEECCCC--------CEEEEECCCCCEEEEECCC---------CEEEEec-cCCCcEEEEEEC
Confidence            432     1233567777776544        4899999999999999731         1444444 578899999999


Q ss_pred             CCCC-EEEEEeCCCeEEEEECCC----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECC
Q 014154          172 ISEK-FSLFGGKGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       172 ~~~~-~l~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~  245 (430)
                      |+++ +|++++.|+.|++||+.+    +..+..+ .+.         ..|.+++|  +| ++.+|++++.|+.|++||++
T Consensus       214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~---------~~v~~~~~--s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHE---------KPVNAAYF--NPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECS---------SCEEEEEE--CTTTSCEEEEEESSSEEEEEETT
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCC---------CceEEEEE--cCCCCCEEEEEcCCCcEEEEECC
Confidence            9998 999999999999999987    4455544 232         77999999  88 99999999999999999999


Q ss_pred             CCCcceEEEeecC-----------------CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC-CCCCeEEE
Q 014154          246 AQRRPVMSFDFRE-----------------TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSI  307 (430)
Q Consensus       246 ~~~~~~~~~~~~~-----------------~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i  307 (430)
                      ++.. ...+..|.                 ..+..++|+|++++  +++.|+.|++||+.+++++..+.++ +...+..+
T Consensus       282 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~  358 (383)
T 3ei3_B          282 DWSK-PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLN  358 (383)
T ss_dssp             BTTS-CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEE
T ss_pred             CCcc-ccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEE
Confidence            8664 44454442                 34455677777766  7779999999999999999999874 25677888


Q ss_pred             EecCCCCeEEEEeCCCcEEEEECCC
Q 014154          308 ARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       308 ~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      +|+|++.+|++++ |+.|+|||+++
T Consensus       359 ~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          359 KFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEecCccEEEEec-CCcEEEEecCC
Confidence            9999999999997 99999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=4.1e-34  Score=268.76  Aligned_cols=290  Identities=13%  Similarity=0.088  Sum_probs=208.0

Q ss_pred             cCCCCCCC---cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC
Q 014154            7 LECPGCPP---LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL   83 (430)
Q Consensus         7 ~~~~~~~~---~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~   83 (430)
                      ++|....|   ..|++|+.||.|+|||+..+.   ......+.+|...|..++|++   .++++|++|+.||+|+|||+.
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~---~~~~~~~~gH~~~V~~l~f~p---~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD---KPTFIKGIGAGGSITGLKFNP---LNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCS---CCEEECCCSSSCCCCEEEECS---SCTTEEEEECSSSCEEEEETT
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC---ceeEEEccCCCCCEEEEEEeC---CCCCEEEEEeCCCEEEEeecc
Confidence            44555433   468899999999999998741   123445678999977666643   156799999999999999997


Q ss_pred             CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154           84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG  163 (430)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~  163 (430)
                      ++.. ..+....     .....+.++.+.+..        ..+++++.+|.+.+|++...         .+..+. .|..
T Consensus       196 ~~~~-~~~~~~~-----~~~~~~~~~~~~~~~--------~~l~~g~~dg~i~~wd~~~~---------~~~~~~-~h~~  251 (435)
T 4e54_B          196 GNIL-RVFASSD-----TINIWFCSLDVSASS--------RMVVTGDNVGNVILLNMDGK---------ELWNLR-MHKK  251 (435)
T ss_dssp             SCEE-EEEECCS-----SCSCCCCCEEEETTT--------TEEEEECSSSBEEEEESSSC---------BCCCSB-CCSS
T ss_pred             CCce-eEEeccC-----CCCccEEEEEECCCC--------CEEEEEeCCCcEeeeccCcc---------eeEEEe-cccc
Confidence            5543 3332211     111234445554433        48999999999999997522         222232 5678


Q ss_pred             ceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          164 TIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       164 ~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      .|.+++|+|++. +|++++.|+.|++||+.+.+....+..      ...|...|++++|  +|++.+|++++.|+.|++|
T Consensus       252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~------~~~h~~~v~~~~~--spdg~~l~s~~~D~~i~iw  323 (435)
T 4e54_B          252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY------SLPHRHPVNAACF--SPDGARLLTTDQKSEIRVY  323 (435)
T ss_dssp             CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB------CCBCSSCEEECCB--CTTSSEEEEEESSSCEEEE
T ss_pred             eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE------eeeccccccceeE--CCCCCeeEEEcCCCEEEEE
Confidence            999999999875 788999999999999987654433221      1123478999999  8999999999999999999


Q ss_pred             ECCCCCcceEEEeecCC------CeEEEEecCCCCEEEEEe------------CCCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154          243 DTSAQRRPVMSFDFRET------PIKAVAEEPDSFNIYIGN------------GSGDLASVDIRTGKLLGCFIGKCSGSI  304 (430)
Q Consensus       243 d~~~~~~~~~~~~~~~~------~i~~~~~sp~~~~l~~~~------------~d~~i~iwd~~~~~~~~~~~~~~~~~v  304 (430)
                      |+.++.. ...+..|..      .+..+.|+|++.++++++            .++.|++||..+++++..+..+|...|
T Consensus       324 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v  402 (435)
T 4e54_B          324 SASQWDC-PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGI  402 (435)
T ss_dssp             ESSSSSS-EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCC
T ss_pred             ECCCCcc-ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcE
Confidence            9998664 445544432      233456777777777664            235799999999999988876558888


Q ss_pred             EEE-EecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154          305 RSI-ARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (430)
Q Consensus       305 ~~i-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  336 (430)
                      .++ +|+|+|.+|++|+ |+.|+||++++++..
T Consensus       403 ~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          403 SSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            887 6999999999876 889999999988753

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8.9e-33  Score=259.76  Aligned_cols=272  Identities=15%  Similarity=0.238  Sum_probs=222.0

Q ss_pred             CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154           47 DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (430)
Q Consensus        47 ~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  126 (430)
                      +|...  +.++.+    ++++|++|+.||.|++||+.+++.+..+.+|        ...+.++.+   ..       ..+
T Consensus       131 ~~~~~--v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h--------~~~v~~l~~---~~-------~~l  186 (435)
T 1p22_A          131 ETSKG--VYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGH--------TGSVLCLQY---DE-------RVI  186 (435)
T ss_dssp             SSCCC--EEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEECCC--------SSCEEEEEC---CS-------SEE
T ss_pred             CCCCc--EEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC--------CCcEEEEEE---CC-------CEE
Confidence            34444  445544    5679999999999999999999888777653        457777766   22       589


Q ss_pred             EEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---EeeCCC
Q 014154          127 LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPP  203 (430)
Q Consensus       127 ~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~  203 (430)
                      ++++.+|.+.+|++....        .+..+. .|...|.+++|+  ++++++|+.||.|++||+.++...   ..+..+
T Consensus       187 ~sg~~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  255 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGE--------MLNTLI-HHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH  255 (435)
T ss_dssp             EEEETTSCEEEEESSSCC--------EEEEEC-CCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             EEEcCCCeEEEEECCCCc--------EEEEEc-CCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence            999999999999986432        444444 577889999996  469999999999999999887654   444444


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~  283 (430)
                      .         ..|.+++|    ++.+|++|+.||.|++||++++. ++..+.+|...|.++.|+  +.+|++|+.||.|+
T Consensus       256 ~---------~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~  319 (435)
T 1p22_A          256 R---------AAVNVVDF----DDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIR  319 (435)
T ss_dssp             S---------SCEEEEEE----ETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred             C---------CcEEEEEe----CCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEE
Confidence            3         67899988    67899999999999999999865 588899999999999985  67999999999999


Q ss_pred             EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc---------eeeEEEeeccccceEEeeec
Q 014154          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ---------LLSAVFLKQHLNEVVFDSAF  354 (430)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~~v~~~~~  354 (430)
                      +||+++++++..+.+| ...|.+++|  ++.+|++|+.||.|++||+.++.         .+..  +.+| ...|.+++|
T Consensus       320 iwd~~~~~~~~~~~~h-~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~h-~~~v~~l~~  393 (435)
T 1p22_A          320 LWDIECGACLRVLEGH-EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT--LVEH-SGRVFRLQF  393 (435)
T ss_dssp             EEETTTCCEEEEECCC-SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE--ECCC-SSCCCCEEE
T ss_pred             EEECCCCCEEEEEeCC-cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheee--ccCC-CCCeEEEEe
Confidence            9999999999999998 899999999  78899999999999999998766         5655  5677 455789999


Q ss_pred             cccccc-cccCCCCceEecCCCCC
Q 014154          355 ADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       355 s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                        ++.+ ++++.||.|++|+....
T Consensus       394 --~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          394 --DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             --CSSCEEECCSSSEEEEEC----
T ss_pred             --CCCEEEEEeCCCEEEEEECCCC
Confidence              5666 99999999999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=256.36  Aligned_cols=324  Identities=9%  Similarity=0.027  Sum_probs=212.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeee---------ecCCCCCCcceeeeeecCCC-CCceeEEeecCCeEEEecCCC
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVE---------RWGDPHSSNCVLAASIDDSQ-NDPLLAVARKNGLTDILNPLN   84 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p-~g~~l~~g~~dg~i~iwd~~~   84 (430)
                      ..+++|+.||.|++|++..+.. ......         ...+|...+..  +.|  +| ++.+|++++.||.|++||+.+
T Consensus        57 ~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~l~s~~~d~~i~iwd~~~  131 (408)
T 4a11_B           57 RYMLSGGSDGVIVLYDLENSSR-QSYYTCKAVCSIGRDHPDVHRYSVET--VQW--YPHDTGMFTSSSFDKTLKVWDTNT  131 (408)
T ss_dssp             CEEEEEETTSCEEEEECCCCSS-SSCEEECEEEEECTTCTTCCSSCEEE--EEE--CTTCTTCEEEEETTSEEEEEETTT
T ss_pred             CEEEEEcCCCeEEEEECCCCcc-cceEeccccccccccccccCCCcEEE--EEE--ccCCCcEEEEEeCCCeEEEeeCCC
Confidence            5789999999999999998621 111110         01247777554  444  55 667999999999999999998


Q ss_pred             CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc
Q 014154           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT  164 (430)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~  164 (430)
                      ++....+..         ...+..+.+.+.....     ..+++++.++.+.+|++....        .+..+. .|...
T Consensus       132 ~~~~~~~~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~d~~~~~--------~~~~~~-~~~~~  188 (408)
T 4a11_B          132 LQTADVFNF---------EETVYSHHMSPVSTKH-----CLVAVGTRGPKVQLCDLKSGS--------CSHILQ-GHRQE  188 (408)
T ss_dssp             TEEEEEEEC---------SSCEEEEEECSSCSSC-----CEEEEEESSSSEEEEESSSSC--------CCEEEC-CCCSC
T ss_pred             CccceeccC---------CCceeeeEeecCCCCC-----cEEEEEcCCCeEEEEeCCCcc--------eeeeec-CCCCc
Confidence            887766653         2356666666543311     488999999999999986432        344444 57789


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe-eeEeeCCCCCC------CCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154          165 IAFSKVDISEK-FSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKN------SLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (430)
Q Consensus       165 i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  236 (430)
                      |.+++|+|++. +|++++.||.|++||++++. .+..+..+...      .....+...|.+++|  +|++.+|++++.|
T Consensus       189 v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d  266 (408)
T 4a11_B          189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF--TSDGLHLLTVGTD  266 (408)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE--CTTSSEEEEEETT
T ss_pred             EEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE--cCCCCEEEEecCC
Confidence            99999999988 58899999999999998765 33433222111      111235578999999  8999999999999


Q ss_pred             CcEEEEECCCCCcceEEEeec-----CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC
Q 014154          237 HQVRLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP  311 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~  311 (430)
                      +.|++||+.++.. ...+..+     ...+........+..+++++.++.|++||+.+++++..+.+| ...|++++|+|
T Consensus       267 g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~  344 (408)
T 4a11_B          267 NRMRLWNSSNGEN-TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH-YKTVDCCVFQS  344 (408)
T ss_dssp             SCEEEEETTTCCB-CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC-SSCEEEEEEET
T ss_pred             CeEEEEECCCCcc-ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC-CCeEEEEEEcC
Confidence            9999999998654 2222221     112222223344567777788999999999999999999998 89999999999


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccc--ccccccCCCCceEecCCCC
Q 014154          312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK--EVANAAADAPMLEIQNGND  376 (430)
Q Consensus       312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--g~~~~~~~d~~i~~~~~~~  376 (430)
                      ++.+|++++.||.|++||+.+++.+....  ...    ....+.+.  ..+.+.+.++.+++|+.+.
T Consensus       345 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          345 NFQELYSGSRDCNILAWVPSLYEPVPDDD--ETT----TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             TTTEEEEEETTSCEEEEEECC----------------------------------------------
T ss_pred             CCCEEEEECCCCeEEEEeCCCCCccCCCC--ceE----eccccccccceeecccCccCceeecCCcc
Confidence            99999999999999999999988876531  111    12233332  2337778899999998764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.3e-32  Score=251.58  Aligned_cols=270  Identities=17%  Similarity=0.213  Sum_probs=221.6

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      ++||+|. |++|+|||+.+++.+..+..+      .+.+.|.++.|.+..        ..+++++.||.+.+|++.... 
T Consensus       117 n~lAvgl-d~tV~lWd~~tg~~~~~~~~~------~~~~~V~sv~fspdg--------~~lasgs~Dg~v~iWd~~~~~-  180 (420)
T 4gga_A          117 NVLAVAL-DNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEG--------NYLAVGTSSAEVQLWDVQQQK-  180 (420)
T ss_dssp             SEEEEEE-TTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTS--------SEEEEEETTSCEEEEETTTTE-
T ss_pred             CEEEEEe-CCEEEEEECCCCCEEEEEEec------CCCCcEEEEEECCCC--------CEEEEEECCCeEEEEEcCCCc-
Confidence            5777774 899999999999987776642      344578888887654        489999999999999976432 


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  224 (430)
                             .++.+. .|...+.+++++  +.+|++|+.|+.+++||..... .+..+..|.         ..+..+.+  .
T Consensus       181 -------~~~~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~---------~~~~~~~~--~  239 (420)
T 4gga_A          181 -------RLRNMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS---------QEVCGLRW--A  239 (420)
T ss_dssp             -------EEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCS---------SCEEEEEE--C
T ss_pred             -------EEEEEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccc---------cceeeeee--c
Confidence                   444444 577788887774  6899999999999999987643 445555554         66889999  8


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCCc---ceEEEeecCCCeEEEEecCCCC-EEEEE--eCCCcEEEEEccCCeEEeeeeC
Q 014154          225 DDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSF-NIYIG--NGSGDLASVDIRTGKLLGCFIG  298 (430)
Q Consensus       225 ~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~~~-~l~~~--~~d~~i~iwd~~~~~~~~~~~~  298 (430)
                      |++.++++++.|+.|++|+...++.   .+.....|...|.+++|+|.+. +++++  +.|+.|++||+++++++..+..
T Consensus       240 ~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~  319 (420)
T 4gga_A          240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA  319 (420)
T ss_dssp             TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc
Confidence            9999999999999999999987542   3567778899999999999764 45543  4799999999999999988887


Q ss_pred             CCCCCeEEEEecCCCCeEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          299 KCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       299 ~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      +  ..+.++.|+|++..+++++  .|+.|+|||+.+++++..  +.+| ...|++++|+|||.+ ++++.|++|++|+..
T Consensus       320 ~--~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~--l~gH-~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          320 H--SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGH-TSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             S--SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--ECCC-SSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             c--cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEE--EcCC-CCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            5  5789999999999888765  789999999999999988  7788 556799999999998 999999999999986


Q ss_pred             CC
Q 014154          376 DT  377 (430)
Q Consensus       376 ~~  377 (430)
                      ..
T Consensus       395 ~~  396 (420)
T 4gga_A          395 EL  396 (420)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.5e-33  Score=246.54  Aligned_cols=235  Identities=15%  Similarity=0.131  Sum_probs=185.2

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .+|++|+.||+|+||++..+   ..+.+..+.+|...|..++|+.  .++|++|++|+.||+|+|||+.+++...     
T Consensus        22 ~~las~s~D~~v~iw~~~~~---~~~~~~~l~gH~~~V~~v~~s~--~~~g~~l~s~s~D~~v~iWd~~~~~~~~-----   91 (297)
T 2pm7_B           22 KRMATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKVMIWKEENGRWSQ-----   91 (297)
T ss_dssp             SEEEEEETTSCEEEEEBCSS---CBCCCEEECCCSSCEEEEEECC--GGGCSEEEEEETTTEEEEEEBSSSCBCC-----
T ss_pred             CEEEEEeCCCEEEEEecCCC---CcEEEEEEccccCCeEEEEecC--CCcCCEEEEEcCCCEEEEEEcCCCceEE-----
Confidence            57999999999999999752   1145678899999977666654  2347899999999999999986543110     


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-  173 (430)
                                 +.                                                .+ ..|...|.+++|+|+ 
T Consensus        92 -----------~~------------------------------------------------~~-~~h~~~v~~v~~~p~~  111 (297)
T 2pm7_B           92 -----------IA------------------------------------------------VH-AVHSASVNSVQWAPHE  111 (297)
T ss_dssp             -----------CE------------------------------------------------EE-CCCSSCEEEEEECCGG
T ss_pred             -----------EE------------------------------------------------Ee-ecCCCceeEEEeCcCC
Confidence                       00                                                00 134567889999997 


Q ss_pred             -CCEEEEEeCCCeEEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecCC-------------CCEEEEEeCCC
Q 014154          174 -EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-------------HRKFVAGTNDH  237 (430)
Q Consensus       174 -~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~~~l~s~~~dg  237 (430)
                       +.+|++++.|+.|++||++++..  ...+..|.         ..|.+++|  +|+             +.+|++|+.|+
T Consensus       112 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~---------~~v~~~~~--~p~~~~~~~~~~~~~~~~~l~sgs~D~  180 (297)
T 2pm7_B          112 YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHA---------IGVNSASW--APATIEEDGEHNGTKESRKFVTGGADN  180 (297)
T ss_dssp             GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCS---------SCEEEEEE--CCCC------------CCEEEEEETTS
T ss_pred             CCcEEEEEECCCcEEEEEecCCCceeeeeeeccc---------CccceEee--cCCcccccccCCCCCCcceEEEEcCCC
Confidence             88999999999999999986532  22333333         67999999  565             57999999999


Q ss_pred             cEEEEECCCCCc---ceEEEeecCCCeEEEEecCCC---CEEEEEeCCCcEEEEEccCCe---EEeee--eCCCCCCeEE
Q 014154          238 QVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGK---LLGCF--IGKCSGSIRS  306 (430)
Q Consensus       238 ~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~---~~~~~--~~~~~~~v~~  306 (430)
                      .|++||++++..   ....+.+|...|.+++|+|++   .+|++++.|++|++||+++..   ....+  ..| ...|.+
T Consensus       181 ~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~  259 (297)
T 2pm7_B          181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWR  259 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEE
T ss_pred             cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC-CCcEEE
Confidence            999999987542   356788999999999999984   899999999999999998743   12223  345 789999


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECC
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ++|+|++++|++++.|+.|+||+..
T Consensus       260 ~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          260 ASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             EEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCcEEEEEEC
Confidence            9999999999999999999999976

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.1e-33  Score=255.23  Aligned_cols=255  Identities=11%  Similarity=0.097  Sum_probs=204.1

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      +++..+.+|...|.+++  |  +|++++||+|+.||.|+|||+..+..                                
T Consensus         2 ~~~~~~~~h~~~v~~~~--~--s~~~~~l~~~~~dg~i~iw~~~~~~~--------------------------------   45 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAV--L--DYYGKRLATCSSDKTIKIFEVEGETH--------------------------------   45 (379)
T ss_dssp             ---CCEEECCCCEEEEE--E--CSSSSEEEEEETTSCEEEEEEETTEE--------------------------------
T ss_pred             CccEEecCCcccEEEEE--E--cCCCCEEEEEECCCcEEEEecCCCcc--------------------------------
Confidence            35567788999855554  4  67888999999999999999752210                                


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCE--  195 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~--  195 (430)
                           .                           .+..+ ..|...|.+++|+++  +++|++++.||.|++||+.+++  
T Consensus        46 -----~---------------------------~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~   92 (379)
T 3jrp_A           46 -----K---------------------------LIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWS   92 (379)
T ss_dssp             -----E---------------------------EEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEE
T ss_pred             -----e---------------------------eeeEe-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCcee
Confidence                 0                           00011 145678899999876  8999999999999999999886  


Q ss_pred             eeEeeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCCeEEEEecC----
Q 014154          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVAEEP----  268 (430)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~~sp----  268 (430)
                      .+..+..+.         ..|.+++|  +|+  +.+|++++.|+.|++||++.... ....+..|...|.+++|+|    
T Consensus        93 ~~~~~~~~~---------~~v~~~~~--~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           93 QIAVHAVHS---------ASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEECCCS---------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EeeeecCCC---------cceEEEEe--CCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            566665554         67999999  777  89999999999999999997632 3556778999999999999    


Q ss_pred             ---------CCCEEEEEeCCCcEEEEEccCCe----EEeeeeCCCCCCeEEEEecCC---CCeEEEEeCCCcEEEEECCC
Q 014154          269 ---------DSFNIYIGNGSGDLASVDIRTGK----LLGCFIGKCSGSIRSIARHPT---LPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       269 ---------~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~i~iwd~~~  332 (430)
                               ++.+|++++.|+.|++||++++.    .+..+.+| ...|.+++|+|+   +.+|++++.||.|++||+.+
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc-cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence                     69999999999999999998764    45677777 899999999999   89999999999999999998


Q ss_pred             Ccee---eEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          333 RQLL---SAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       333 ~~~~---~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +...   ..+....+ ...+++++|+|+|.+ ++++.||.|++|+...
T Consensus       241 ~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          241 EQGPWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             TTSCCEEEESSSSCC-SSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             CCccceeeeeccccC-CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            7522   22112224 556899999999998 8889999999999874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=251.38  Aligned_cols=292  Identities=16%  Similarity=0.137  Sum_probs=227.9

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-Cccc-ceeeccCCCCCCCCCCceEEEEEeecCcc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLR-VAISNAGDSGAQPEDDGIVGLHLFKRQRE  117 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  117 (430)
                      +.+..+.+|...|.+++++.+. ++|++|++|+.||.|+|||+.+ +..+ ..+..        +...+.++.+.+..  
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~--------h~~~v~~~~~~~~~--   98 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPT-LPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--------HTGPVLDVCWSDDG--   98 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTT-SSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE--------CSSCEEEEEECTTS--
T ss_pred             ceeEeccCCCCceEEEEEcCCC-CCceEEEEECCCCcEEEEEcCCCCceeEEEecc--------ccCCEEEEEECcCC--
Confidence            5666788899996666664421 1268999999999999999987 4443 44443        34578888876643  


Q ss_pred             cccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE--cCCCCEEEEEeCCCeEEEEECCCCe
Q 014154          118 ESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV--DISEKFSLFGGKGVEVNVWDLDKCE  195 (430)
Q Consensus       118 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~  195 (430)
                            ..+++++.+|.+.+|++....        .+.  ...|...|.+++|  +|++++|++++.|+.|++||+++++
T Consensus        99 ------~~l~s~~~dg~v~iwd~~~~~--------~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A           99 ------SKVFTASCDKTAKMWDLSSNQ--------AIQ--IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             ------SEEEEEETTSEEEEEETTTTE--------EEE--EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS
T ss_pred             ------CEEEEEcCCCcEEEEEcCCCC--------cee--eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc
Confidence                  489999999999999976332        233  2357899999999  8899999999999999999999988


Q ss_pred             eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecCCCCE--
Q 014154          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFN--  272 (430)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~--  272 (430)
                      .+..+..+          ..+.++.+    ....+++++.++.+.+|+++........+.. +...+.++.+.++...  
T Consensus       163 ~~~~~~~~----------~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (368)
T 3mmy_A          163 PMMVLQLP----------ERCYCADV----IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP  228 (368)
T ss_dssp             CSEEEECS----------SCEEEEEE----ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred             EEEEEecC----------CCceEEEe----cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC
Confidence            87777654          34666666    3458888999999999999975543333322 3456677777666554  


Q ss_pred             --EEEEeCCCcEEEEEccCC---eEEeeeeCCCCC------------CeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154          273 --IYIGNGSGDLASVDIRTG---KLLGCFIGKCSG------------SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       273 --l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~------------~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  335 (430)
                        +++++.|+.|++||++..   ..+..+.+| ..            .|++++|+|++.+|++++.||.|++||+.++++
T Consensus       229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~  307 (368)
T 3mmy_A          229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCH-RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTK  307 (368)
T ss_dssp             EEEEEEETTSEEEEEESSCSCHHHHSEEEECS-EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred             CeEEEecCCCcEEEEecCCCCccccceeeeee-ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcE
Confidence              999999999999999987   556777776 44            699999999999999999999999999999999


Q ss_pred             eeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          336 LSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       336 ~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +..  +.+| ...+.+++|+|+|.+ ++++.|+..+.|+...
T Consensus       308 ~~~--~~~~-~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          308 LKT--SEQL-DQPISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             EEE--CCCC-SSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             EEE--ecCC-CCCceEEEECCCCCeEEEEecccccccccccC
Confidence            887  5666 556799999999998 8888888776666443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.2e-32  Score=250.33  Aligned_cols=282  Identities=12%  Similarity=0.052  Sum_probs=225.1

Q ss_pred             eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc---cceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL---RVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      ....+|...+..+++    +|++++|++|+.||.|+||++.++..   ...+.        .+...+.++.+.+. .   
T Consensus         5 ~~~~~h~~~v~~~~~----s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~-~---   68 (342)
T 1yfq_A            5 QIEQAPKDYISDIKI----IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--------RYKHPLLCCNFIDN-T---   68 (342)
T ss_dssp             ECSSCCSSCEEEEEE----EGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--------ECSSCEEEEEEEES-S---
T ss_pred             ecccCCCCcEEEEEE----cCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--------ecCCceEEEEECCC-C---
Confidence            334578888555554    55788999999999999999987762   22222        23457888877654 3   


Q ss_pred             cccCc-eEEEEccCCeeEEEEe-eecCccccCCCcceEEeeec--CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC--
Q 014154          120 SSRSR-TLLTCTTKGKASMRSI-EVTKVSAESSCSTVKSWNVC--ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK--  193 (430)
Q Consensus       120 ~~~~~-~~~~~~~~g~~~v~~~-~~~~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~--  193 (430)
                          . .+++++.+|.+.+|++ ...         ....+. .  |...|.+++|+| +++|++++.|+.|++||+.+  
T Consensus        69 ----~~~l~~~~~dg~i~~wd~~~~~---------~~~~~~-~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~  133 (342)
T 1yfq_A           69 ----DLQIYVGTVQGEILKVDLIGSP---------SFQALT-NNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             ----SEEEEEEETTSCEEEECSSSSS---------SEEECB-SCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHT
T ss_pred             ----CcEEEEEcCCCeEEEEEeccCC---------ceEecc-ccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccc
Confidence                5 7899999999999997 533         233333 4  788999999999 99999999999999999976  


Q ss_pred             -------CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC-CCcc-eEEEeecCCCeEEE
Q 014154          194 -------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA-QRRP-VMSFDFRETPIKAV  264 (430)
Q Consensus       194 -------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~~i~~~  264 (430)
                             ++.+..+.          +...|.+++|  ++++  +++++.|+.|++||++. +... ......|...|.++
T Consensus       134 ~~~~~~~~~~~~~~~----------~~~~v~~~~~--~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i  199 (342)
T 1yfq_A          134 DGVIAVKNLNSNNTK----------VKNKIFTMDT--NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV  199 (342)
T ss_dssp             TBCEEEEESCSSSSS----------SCCCEEEEEE--CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred             cccccccCCeeeEEe----------eCCceEEEEe--cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEE
Confidence                   44443333          3377999999  6665  99999999999999997 5442 33445678899999


Q ss_pred             EecC-CCCEEEEEeCCCcEEEEEccCC------eEEeeeeCCCCC---------CeEEEEecCCCCeEEEEeCCCcEEEE
Q 014154          265 AEEP-DSFNIYIGNGSGDLASVDIRTG------KLLGCFIGKCSG---------SIRSIARHPTLPIIASCGLDSYLRFW  328 (430)
Q Consensus       265 ~~sp-~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~---------~v~~i~~~~~~~~l~s~~~dg~i~iw  328 (430)
                      +|+| ++++|++++.||.|++||++..      +....+..| ..         .|.+++|+|++.+|++++.||.|++|
T Consensus       200 ~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH-RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC-CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc-cccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence            9999 9999999999999999999887      777788876 44         89999999999999999999999999


Q ss_pred             ECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCc-eEecCC
Q 014154          329 DIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPM-LEIQNG  374 (430)
Q Consensus       329 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~-i~~~~~  374 (430)
                      |+.+++.+..  +.+|....|.+++  |++.+ ++++.|+. .+.|..
T Consensus       279 d~~~~~~~~~--~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          279 NLQTRKKIKN--FAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ETTTTEEEEE--CCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             cCccHhHhhh--hhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence            9999998887  5565345578888  99988 99999999 766664

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.5e-32  Score=250.18  Aligned_cols=279  Identities=10%  Similarity=0.039  Sum_probs=194.9

Q ss_pred             ceEEEEccCCCCCcc---e--eeeecCCCCCCcceeeeeec-----CCCCCceeEEeecCCeEEEecCCCCcccceee-c
Q 014154           25 LIKVIEARGEHGGVP---K--VVERWGDPHSSNCVLAASID-----DSQNDPLLAVARKNGLTDILNPLNGDLRVAIS-N   93 (430)
Q Consensus        25 ~i~vw~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~-----~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~-~   93 (430)
                      .|++|++..+.....   .  ....+..|...+.++++..+     ..+.+..|++|+.|+.+++|++........+. .
T Consensus        44 ~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~  123 (365)
T 4h5i_A           44 KLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTS  123 (365)
T ss_dssp             EEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeee
Confidence            599999986522111   1  11245667766544433210     01223344455678889999986554322221 1


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEE--EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL--TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      .........+..+..+.+.+..        ..++  +++.++.++||++....        .  ++.+.+...|.+++|+
T Consensus       124 ~~~~~~~~~~~~~~~v~fSpDg--------~~la~as~~~d~~i~iwd~~~~~--------~--~~~~~~~~~V~~v~fs  185 (365)
T 4h5i_A          124 VDFDASTNADDYTKLVYISREG--------TVAAIASSKVPAIMRIIDPSDLT--------E--KFEIETRGEVKDLHFS  185 (365)
T ss_dssp             ECSSCCCCTTCCEEEEEECTTS--------SCEEEEESCSSCEEEEEETTTTE--------E--EEEEECSSCCCEEEEC
T ss_pred             eceeecCCcccCEEEEEEcCCC--------CEEEEEECCCCCEEEEeECCCCc--------E--EEEeCCCCceEEEEEc
Confidence            1111112233445555554433        2444  34468999999975322        2  3344577889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC----cEEEEECCCC
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH----QVRLYDTSAQ  247 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~  247 (430)
                      |++++|++++.+ .+.+|+..++..+.......       +...|.+++|  +|++.++++++.|+    .+++|++...
T Consensus       186 pdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~-------~~~~v~~v~f--spdg~~l~~~s~d~~~~~~i~~~~~~~~  255 (365)
T 4h5i_A          186 TDGKVVAYITGS-SLEVISTVTGSCIARKTDFD-------KNWSLSKINF--IADDTVLIAASLKKGKGIVLTKISIKSG  255 (365)
T ss_dssp             TTSSEEEEECSS-CEEEEETTTCCEEEEECCCC-------TTEEEEEEEE--EETTEEEEEEEESSSCCEEEEEEEEETT
T ss_pred             cCCceEEeccce-eEEEEEeccCcceeeeecCC-------CCCCEEEEEE--cCCCCEEEEEecCCcceeEEeecccccc
Confidence            999999999865 57777777766654332211       2367999999  88999999999887    6888998764


Q ss_pred             Ccc---eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee-eCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154          248 RRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       248 ~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                      ...   ...+.+|...|++++|+|+|++|++|+.|+.|+|||+++++++..+ .+| ...|++++|+|||++|++||.|+
T Consensus       256 ~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          256 NTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH-SFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             EEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS-SSCEEEEEECTTSCEEEEEETTS
T ss_pred             eecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc-cCCEEEEEECCCCCEEEEEeCCC
Confidence            421   3456778899999999999999999999999999999999999886 577 99999999999999999999999


Q ss_pred             cEEEEECCC
Q 014154          324 YLRFWDIKT  332 (430)
Q Consensus       324 ~i~iwd~~~  332 (430)
                      +|+|||+..
T Consensus       335 tvrvw~ip~  343 (365)
T 4h5i_A          335 TIHIIKLPL  343 (365)
T ss_dssp             EEEEEECCT
T ss_pred             eEEEEEcCC
Confidence            999999964

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=264.47  Aligned_cols=285  Identities=12%  Similarity=0.128  Sum_probs=215.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCc-ceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC---CCcccce
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGV-PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL---NGDLRVA   90 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~---~~~~~~~   90 (430)
                      ..|++|+.||+|+|||+.....+. .+....+ .|...+.  ++.+  +|++++|++|+.||.|++||+.   +++.+..
T Consensus        77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~--~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~  151 (437)
T 3gre_A           77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVT--QITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF  151 (437)
T ss_dssp             CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEE--EEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEE
T ss_pred             CEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEE--EEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeec
Confidence            579999999999999997721111 1222233 3777744  5555  6788899999999999999994   5655554


Q ss_pred             eecc--CCCCCCC--CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec-CCCce
Q 014154           91 ISNA--GDSGAQP--EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTI  165 (430)
Q Consensus        91 ~~~~--~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i  165 (430)
                      +..+  ....+.+  +...+.++.+.....      ...+++++.++.+.+|++....        .+..+... |...|
T Consensus       152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v  217 (437)
T 3gre_A          152 LNCECIRKINLKNFGKNEYAVRMRAFVNEE------KSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGAV  217 (437)
T ss_dssp             EEEEEEEEEEGGGGSSCCCEEEEEEEECSS------CEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCCE
T ss_pred             cccceeEEEEccCcccccCceEEEEEEcCC------CCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCce
Confidence            4431  1222223  445666555443221      1589999999999999986432        45555532 67899


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC-CCCCCCCCCcCCcceeEEEEee--cCCCCEEEEEeCCCcEEEE
Q 014154          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PPPKNSLGIFTPTWFTSAAFLS--IDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~s~~~dg~i~iw  242 (430)
                      .+++|+|++++|++|+.||.|++||+++++.+..+. .+.         ..|.+++|.+  ++++.+|++|+.|+.|++|
T Consensus       218 ~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          218 SSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH---------APITHVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC---------EEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC---------CceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            999999999999999999999999999998888765 332         6799997632  3678899999999999999


Q ss_pred             ECCCCCcceEEEee--------------------------cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee
Q 014154          243 DTSAQRRPVMSFDF--------------------------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (430)
Q Consensus       243 d~~~~~~~~~~~~~--------------------------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  296 (430)
                      |+++++. +..+.+                          |...|++++|+ ++++|++|+.|+.|++||+.+++.+..+
T Consensus       289 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          289 NFVKGHC-QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             ETTTTEE-EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             EcCCCcE-EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence            9998653 555553                          44568888998 7789999999999999999998877777


Q ss_pred             eCC------------------------------------CCCCeEEEEecCC--CCeEEEEeCCCcEEEEE
Q 014154          297 IGK------------------------------------CSGSIRSIARHPT--LPIIASCGLDSYLRFWD  329 (430)
Q Consensus       297 ~~~------------------------------------~~~~v~~i~~~~~--~~~l~s~~~dg~i~iwd  329 (430)
                      .+|                                    |...|++++|+++  +.+|++|+.||.|+||+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          367 ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            663                                    4889999999998  78999999999999995

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=9.5e-32  Score=244.45  Aligned_cols=275  Identities=10%  Similarity=0.055  Sum_probs=210.8

Q ss_pred             eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc----cceeeccCCCCCCCCCCceEEEEEeec-Cc
Q 014154           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL----RVAISNAGDSGAQPEDDGIVGLHLFKR-QR  116 (430)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~  116 (430)
                      ...+.+|...|.+++  |  +|++++|++|+.||.|++||+.++..    ...+.        .+...+.++.+.+. ..
T Consensus         4 ~~~~~gH~~~v~~~~--~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~d~   71 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVV--Y--DFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR--------AHDSSIVAIDWASPEYG   71 (351)
T ss_dssp             CCEECCCSSCEEEEE--E--CSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE--------CCSSCEEEEEECCGGGC
T ss_pred             cccCcccccceeEEE--E--cCCCCEEEEeeCCCeEEEEECCCCCCcceecceec--------cCCCcEEEEEEcCCCCC
Confidence            345678988855544  4  67888999999999999999987643    33333        34568888888764 12


Q ss_pred             ccccccCceEEEEccCCeeEEEEeeecCccccC-CCcceEEeeecCCCceEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 014154          117 EESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDK  193 (430)
Q Consensus       117 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~d~~~  193 (430)
                             ..+++++.++.+.+|++......... ....+..+. .|...|.+++|+|+  +++|++++.|+.|++||+.+
T Consensus        72 -------~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~  143 (351)
T 3f3f_A           72 -------RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE  143 (351)
T ss_dssp             -------SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS
T ss_pred             -------CEEEEEcCCCeEEEEecCCCcccccccCcceeeeec-ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC
Confidence                   58999999999999998754321100 002234443 57789999999999  99999999999999999987


Q ss_pred             CeeeEeeCCC----CCCCCCCcCCcceeEEEEeecCC---CCEEEEEeCCCcEEEEECCCCCc-ceEEEeecCCCeEEEE
Q 014154          194 CEKIWTAKPP----PKNSLGIFTPTWFTSAAFLSIDD---HRKFVAGTNDHQVRLYDTSAQRR-PVMSFDFRETPIKAVA  265 (430)
Q Consensus       194 ~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~i~~~~  265 (430)
                      ++.+..+...    ........+...+.+++|  +|+   +.+|++++.++.+.+|+...+.. .+..+.+|...|++++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~  221 (351)
T 3f3f_A          144 PSDLRSWTLTSEMKVLSIPPANHLQSDFCLSW--CPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSIS  221 (351)
T ss_dssp             TTCTTCCEEEEEEESCSCCCSSCSCCCEEEEE--CCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEE
T ss_pred             hHHhccccccccccccccccCCcccceeEEEe--ccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEE
Confidence            6543322110    000001123467899999  676   88999999999998888776442 3566778999999999


Q ss_pred             ecCCC----CEEEEEeCCCcEEEEEccCC----------------------------------------------eEEee
Q 014154          266 EEPDS----FNIYIGNGSGDLASVDIRTG----------------------------------------------KLLGC  295 (430)
Q Consensus       266 ~sp~~----~~l~~~~~d~~i~iwd~~~~----------------------------------------------~~~~~  295 (430)
                      |+|++    ++|++++.||.|++||++++                                              +.+..
T Consensus       222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (351)
T 3f3f_A          222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE  301 (351)
T ss_dssp             ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred             ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence            99998    89999999999999999875                                              56777


Q ss_pred             eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154          296 FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       296 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      +.+| ...|++++|+|++++|++++.||.|+|||+.+++.+..+
T Consensus       302 ~~~h-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          302 HDDH-NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ECTT-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             Eecc-cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            8887 889999999999999999999999999999988766653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=267.31  Aligned_cols=232  Identities=12%  Similarity=0.038  Sum_probs=182.6

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEee-ecCCCceEEEEEcCC------CCEEEEEeCCCeEEEEECCCCee
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDIS------EKFSLFGGKGVEVNVWDLDKCEK  196 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~------~~~l~~~~~d~~i~~~d~~~~~~  196 (430)
                      ..+++++.|++++||++.....      ....... ..+.+.|.+++|+|+      +.+|++++.||+|++||+.++..
T Consensus       174 ~~laS~s~D~tI~iWd~~~~~~------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~  247 (524)
T 2j04_B          174 EMFDKEKHSSCIQIFKMNTSTL------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNAT  247 (524)
T ss_dssp             --------CEEEEEEEEETTTC------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSS
T ss_pred             hhhccCCCCceEEEEEccCCCC------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcc
Confidence            3678889999999999864321      0111111 134678999999996      57999999999999999986542


Q ss_pred             e-----------EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEE-
Q 014154          197 I-----------WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAV-  264 (430)
Q Consensus       197 ~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~-  264 (430)
                      .           ..+..         |...|++++|  +++ ..|++|+.||+|++||++++..+...+.+|...|.+| 
T Consensus       248 ~~~~~~~~~~p~~~l~~---------h~~~v~sv~~--s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~  315 (524)
T 2j04_B          248 DVHVFKMCEKPSLTLSL---------ADSLITTFDF--LSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS  315 (524)
T ss_dssp             SSSEEECCCSCSEEECC---------TTTCEEEEEE--SSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred             ccccceeecCceEEEEc---------CCCCEEEEEe--cCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence            1           12222         3377999999  554 4899999999999999997666677889999999999 


Q ss_pred             -EecCCC-CEEEEEeCCCcEEEEEccCCeEEeeeeCCCC-CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154          265 -AEEPDS-FNIYIGNGSGDLASVDIRTGKLLGCFIGKCS-GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       265 -~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  341 (430)
                       +|+|++ ++|++++.|++|+|||+++++++..+.+|.. ..|.+++|+|++..|++++.|++|++||++++.++..  +
T Consensus       316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~--l  393 (524)
T 2j04_B          316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP--L  393 (524)
T ss_dssp             EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE--E
T ss_pred             EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee--e
Confidence             678887 8999999999999999999888777777622 3588999999999999999999999999999988777  5


Q ss_pred             eccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          342 KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       342 ~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .+| ...|++++|+|+|++ ++++.|++|++|+...
T Consensus       394 ~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          394 VSR-ETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEC-SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             ecC-CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            577 556799999999998 9999999999999643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.1e-31  Score=253.09  Aligned_cols=282  Identities=13%  Similarity=0.208  Sum_probs=232.6

Q ss_pred             eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      ....+.+|...+. .++.+    +|++|++|+.||.|++||+.+++.+..+.+        +...+.++.+.   .    
T Consensus       110 ~~~~l~~h~~~v~-~~~~~----~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~--------h~~~v~~~~~~---~----  169 (445)
T 2ovr_B          110 SPKVLKGHDDHVI-TCLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVG--------HTGGVWSSQMR---D----  169 (445)
T ss_dssp             CCEEEECSTTSCE-EEEEE----ETTEEEEEETTSCEEEEETTTCCEEEECCC--------CSSCEEEEEEE---T----
T ss_pred             eeEEecccCCCcE-EEEEE----cCCEEEEEECCCcEEEEECCCCcEEEEEcC--------CCCCEEEEEec---C----
Confidence            4456778887652 34444    467999999999999999999988877665        34577777664   2    


Q ss_pred             ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (430)
Q Consensus       121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  200 (430)
                         ..+++++.+|.+.+|++....        .+..+. .|...|.+++++  ++.+++|+.||.|++||+.+++.+..+
T Consensus       170 ---~~l~s~~~dg~i~vwd~~~~~--------~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~  235 (445)
T 2ovr_B          170 ---NIIISGSTDRTLKVWNAETGE--------CIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL  235 (445)
T ss_dssp             ---TEEEEEETTSCEEEEETTTTE--------EEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred             ---CEEEEEeCCCeEEEEECCcCc--------EEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence               589999999999999975332        344443 577889999995  678999999999999999999988888


Q ss_pred             CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (430)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~  280 (430)
                      ..+.         ..|.++.|    ++.+|++|+.|+.|++||++++. ++..+.+|...|.++.|  ++.++++++.|+
T Consensus       236 ~~~~---------~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~  299 (445)
T 2ovr_B          236 MGHV---------AAVRCVQY----DGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDT  299 (445)
T ss_dssp             ECCS---------SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred             cCCc---------ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence            7654         67899988    67899999999999999999855 58888999999999999  788999999999


Q ss_pred             cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          281 DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       281 ~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      .|++||+++++++..+.+| ...+.++.+  ++.+|++++.||.|++||+.+++.+..+.........|.+++|+  +.+
T Consensus       300 ~i~i~d~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  374 (445)
T 2ovr_B          300 SIRVWDVETGNCIHTLTGH-QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNF  374 (445)
T ss_dssp             CEEEEETTTCCEEEEECCC-CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSE
T ss_pred             eEEEEECCCCCEEEEEcCC-cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCE
Confidence            9999999999999999998 888988887  56799999999999999999999988743211125567999996  455


Q ss_pred             -cccCCCCceEecCCCCC
Q 014154          361 -NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       361 -~~~~~d~~i~~~~~~~~  377 (430)
                       ++++.||.|++|+....
T Consensus       375 l~s~~~dg~v~iwd~~~~  392 (445)
T 2ovr_B          375 VITSSDDGTVKLWDLKTG  392 (445)
T ss_dssp             EEEEETTSEEEEEETTTC
T ss_pred             EEEEeCCCeEEEEECCCC
Confidence             99999999999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=9.7e-33  Score=248.02  Aligned_cols=235  Identities=11%  Similarity=0.084  Sum_probs=184.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|++|+.|++|+|||+..+   ....+..+.+|...|..++++.  ..++++|++|+.|++|+|||+.++....     
T Consensus        26 ~~lasgs~D~~v~lwd~~~~---~~~~~~~l~gH~~~V~~v~~~~--~~~~~~l~s~s~D~~v~iWd~~~~~~~~-----   95 (316)
T 3bg1_A           26 TRLATCSSDRSVKIFDVRNG---GQILIADLRGHEGPVWQVAWAH--PMYGNILASCSYDRKVIIWREENGTWEK-----   95 (316)
T ss_dssp             CEEEEEETTTEEEEEEEETT---EEEEEEEEECCSSCEEEEEECC--GGGSSCEEEEETTSCEEEECCSSSCCCE-----
T ss_pred             CEEEEEeCCCeEEEEEecCC---CcEEEEEEcCCCccEEEEEeCC--CCCCCEEEEEECCCEEEEEECCCCcceE-----
Confidence            57899999999999999874   1124667889999977766654  2247899999999999999986543100     


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-  173 (430)
                                 +                                                ..+ ..|...|.+++|+|+ 
T Consensus        96 -----------~------------------------------------------------~~~-~~h~~~V~~v~~~p~~  115 (316)
T 3bg1_A           96 -----------S------------------------------------------------HEH-AGHDSSVNSVCWAPHD  115 (316)
T ss_dssp             -----------E------------------------------------------------EEE-CCCSSCCCEEEECCTT
T ss_pred             -----------E------------------------------------------------EEc-cCCCCceEEEEECCCC
Confidence                       0                                                000 135678889999997 


Q ss_pred             -CCEEEEEeCCCeEEEEECCCCeee---EeeCCCCCCCCCCcCCcceeEEEEeecCC-----------------CCEEEE
Q 014154          174 -EKFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSIDD-----------------HRKFVA  232 (430)
Q Consensus       174 -~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~l~s  232 (430)
                       +.+|++|+.|++|++||+..+...   ..+..|         ...|.+++|  +|+                 +.+|++
T Consensus       116 ~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h---------~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s  184 (316)
T 3bg1_A          116 YGLILACGSSDGAISLLTYTGEGQWEVKKINNAH---------TIGCNAVSW--APAVVPGSLIDHPSGQKPNYIKRFAS  184 (316)
T ss_dssp             TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS---------SSCBCCCEE--CCCCCC------CCSCCCCCCCBEEC
T ss_pred             CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc---------cCCcceEEE--ccccCCccccccccccCccccceEEE
Confidence             789999999999999999865321   222222         366888888  555                 468999


Q ss_pred             EeCCCcEEEEECCCCC--cceEEEeecCCCeEEEEecCCC----CEEEEEeCCCcEEEEEccCC---e-EEeeeeCCCCC
Q 014154          233 GTNDHQVRLYDTSAQR--RPVMSFDFRETPIKAVAEEPDS----FNIYIGNGSGDLASVDIRTG---K-LLGCFIGKCSG  302 (430)
Q Consensus       233 ~~~dg~i~iwd~~~~~--~~~~~~~~~~~~i~~~~~sp~~----~~l~~~~~d~~i~iwd~~~~---~-~~~~~~~~~~~  302 (430)
                      |+.|+.|++||++...  .++..+.+|...|.+++|+|++    .+|++++.|++|++||+++.   + ....+..| ..
T Consensus       185 gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~  263 (316)
T 3bg1_A          185 GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF-ND  263 (316)
T ss_dssp             CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC-SS
T ss_pred             ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC-CC
Confidence            9999999999997542  3466788999999999999986    88999999999999999762   1 22345556 78


Q ss_pred             CeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          303 SIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      .|.+++|+|++.+|++++.|+.|+||+..
T Consensus       264 ~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          264 VVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            99999999999999999999999999976

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.8e-33  Score=255.52  Aligned_cols=274  Identities=11%  Similarity=0.089  Sum_probs=200.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc---cccee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAI   91 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~---~~~~~   91 (430)
                      ..+++|+.||.|+||++..+   .++.+..+.+|...+..  +.|  +|++++|++|+.||.|++||+.+++   ....+
T Consensus        24 ~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~h~~~v~~--~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~   96 (377)
T 3dwl_C           24 TEFVTTTATNQVELYEQDGN---GWKHARTFSDHDKIVTC--VDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL   96 (377)
T ss_dssp             SEEECCCSSSCBCEEEEETT---EEEECCCBCCCSSCEEE--EEE--CTTTCCEEEEETTSSEEEC------CCCCEEEC
T ss_pred             CEEEEecCCCEEEEEEccCC---ceEEEEEEecCCceEEE--EEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe
Confidence            46888989999999999974   12356678889888554  445  6788899999999999999998876   23332


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      .        .+...+.++.+.+..        ..+++++.++.+.+|++.....     ...++.+...|...|.+++|+
T Consensus        97 ~--------~~~~~v~~~~~~~~~--------~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~h~~~v~~~~~~  155 (377)
T 3dwl_C           97 L--------RLNRAATFVRWSPNE--------DKFAVGSGARVISVCYFEQEND-----WWVSKHLKRPLRSTILSLDWH  155 (377)
T ss_dssp             C--------CCSSCEEEEECCTTS--------SCCEEEESSSCEEECCC----------CCCCEEECSSCCSCEEEEEEC
T ss_pred             c--------ccCCceEEEEECCCC--------CEEEEEecCCeEEEEEECCccc-----ceeeeEeecccCCCeEEEEEc
Confidence            2        345678877776643        4899999999999999864421     012444443478999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCC------------------CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDK------------------CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  233 (430)
                      |++++|++++.|+.|++||+..                  ++.+..+ .         |...|.+++|  +|++.+|+++
T Consensus       156 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~v~~~~~--sp~~~~l~~~  223 (377)
T 3dwl_C          156 PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P---------SGGWVHAVGF--SPSGNALAYA  223 (377)
T ss_dssp             TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C---------CSSSEEEEEE--CTTSSCEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c---------CCceEEEEEE--CCCCCEEEEE
Confidence            9999999999999999999863                  2233333 2         3477999999  8999999999


Q ss_pred             eCCCcEEEEECCCCCcc---eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe--E----------------
Q 014154          234 TNDHQVRLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK--L----------------  292 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~--~----------------  292 (430)
                      +.|+.|++||+.++..+   +..+..|...|.+++|+|++++|++|+.++.+ +|+.....  .                
T Consensus       224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (377)
T 3dwl_C          224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHT  302 (377)
T ss_dssp             ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSS
T ss_pred             eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccc
Confidence            99999999999986642   56788899999999999999999998766655 67654211  0                


Q ss_pred             ------------E------eee----------------eCCCCCCeEEEEecCCC-C---eEEEEeCCCcEEEEEC
Q 014154          293 ------------L------GCF----------------IGKCSGSIRSIARHPTL-P---IIASCGLDSYLRFWDI  330 (430)
Q Consensus       293 ------------~------~~~----------------~~~~~~~v~~i~~~~~~-~---~l~s~~~dg~i~iwd~  330 (430)
                                  +      ..+                ..| ...|+++.+.+.. .   .|+|||.||.|+|||+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H-~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          303 GNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVH-QNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             SSBCCCCCC-------------------------CCCSSSC-SSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccccccccccccccccchhhccccccccccCccc-cceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                        0      011                115 8899999976644 3   5999999999999985

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=250.77  Aligned_cols=273  Identities=7%  Similarity=0.017  Sum_probs=204.5

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      .+++.+|++|+.||.|++||+.+++.+..+..          ..+..+.+   .        ..+++++.|+.+.+|+..
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~----------~~v~~~~~---~--------~~~~s~s~D~~i~~w~~~  103 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSKTITTITT----------PNPRTGGE---H--------PAIISRGPCNRLLLLYPG  103 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSSCEEEEEE----------ECCCTTCC---C--------CSEEEECSTTEEEEEETT
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCcEEEEEec----------CCceeeee---C--------CceEEecCCCeEEEEEcc
Confidence            45678999999999999999999987766642          01111111   1        127889999999999754


Q ss_pred             ecCccccC-CCcceEEeeecCCCceEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeE
Q 014154          142 VTKVSAES-SCSTVKSWNVCASGTIAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (430)
Q Consensus       142 ~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (430)
                      ........ ....++.+...+...|.+++|+|  ++++|++++.|++|++||+++++.......+.        ...+.+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~--------~~~i~~  175 (343)
T 3lrv_A          104 NQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS--------DVEYSS  175 (343)
T ss_dssp             TEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS--------SCCCCE
T ss_pred             CceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC--------CCceEE
Confidence            21100000 11235555556668899999999  99999999999999999999988866554332        246899


Q ss_pred             EEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee
Q 014154          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI  297 (430)
Q Consensus       219 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  297 (430)
                      ++|  +|++.+|++|+.||.|++||++++......+.. |..+|++++|+|++.+|++++ ++.|++||+++++.+..+.
T Consensus       176 ~~~--~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~  252 (343)
T 3lrv_A          176 GVL--HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP  252 (343)
T ss_dssp             EEE--CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC
T ss_pred             EEE--CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec
Confidence            999  899999999999999999999997754377888 999999999999999999999 5599999999987765554


Q ss_pred             C---CCCCCeE--EEEecCCCCeEEEEeC-CCcEEEEECCCCceeeEEEeeccccceEEeeeccc---cccc-cccCCCC
Q 014154          298 G---KCSGSIR--SIARHPTLPIIASCGL-DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD---KEVA-NAAADAP  367 (430)
Q Consensus       298 ~---~~~~~v~--~i~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~---~g~~-~~~~~d~  367 (430)
                      .   | ...+.  +++|+|++++|++++. |+.|+||++.+......  .     ..+..++|++   +... ++++.|+
T Consensus       253 ~~~~~-~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~l~~~~~d~  324 (343)
T 3lrv_A          253 TYTIP-EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT--K-----DEESALCLQSDTADFTDMDVVCGDG  324 (343)
T ss_dssp             CCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE--E-----EEEEECCC----CCCCEEEEEEETT
T ss_pred             ccccc-cccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE--e-----cCceeEecCccccccceeEEEecCC
Confidence            3   2 33343  6999999999999998 99999999976654433  1     2357788888   6666 7788888


Q ss_pred             ceEecCC
Q 014154          368 MLEIQNG  374 (430)
Q Consensus       368 ~i~~~~~  374 (430)
                      .+.++-.
T Consensus       325 ~~~~~~~  331 (343)
T 3lrv_A          325 GIAAILK  331 (343)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEEe
Confidence            8887743

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.4e-30  Score=233.95  Aligned_cols=273  Identities=18%  Similarity=0.216  Sum_probs=217.4

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      ++++ +||+| .|++|+|||+.+++.+..+..+      .+...+.++.+.+..        ..+++++.|+.+++|++.
T Consensus        34 S~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~------~~~~~V~~v~~~~~~--------~~l~sgs~Dg~v~iw~~~   97 (318)
T 4ggc_A           34 SSGN-VLAVA-LDNSVYLWSASSGDILQLLQME------QPGEYISSVAWIKEG--------NYLAVGTSSAEVQLWDVQ   97 (318)
T ss_dssp             CTTS-EEEEE-ETTEEEEEETTTCCEEEEEECC------STTCCEEEEEECTTS--------SEEEEEETTSEEEEEETT
T ss_pred             CCCC-EEEEE-eCCEEEEEECCCCCEEEEEEec------CCCCeEEEEEECCCC--------CEEEEEECCCcEEEeecC
Confidence            5554 67766 5899999999999988877643      344578888876654        489999999999999976


Q ss_pred             ecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeEEE
Q 014154          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAA  220 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~  220 (430)
                      ...        .++.+. .|...+.++.+  ++..+++++.++.+++|+..... .+..+..+.         ..+..+.
T Consensus        98 ~~~--------~~~~~~-~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~  157 (318)
T 4ggc_A           98 QQK--------RLRNMT-SHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS---------QEVCGLR  157 (318)
T ss_dssp             TTE--------EEEEEE-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCS---------SCEEEEE
T ss_pred             Cce--------eEEEec-CccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCcc---------CceEEEE
Confidence            432        444444 55666665544  57899999999999999987653 344455543         6688899


Q ss_pred             EeecCCCCEEEEEeCCCcEEEEECCCCCc---ceEEEeecCCCeEEEEecCCCCEE---EEEeCCCcEEEEEccCCeEEe
Q 014154          221 FLSIDDHRKFVAGTNDHQVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPDSFNI---YIGNGSGDLASVDIRTGKLLG  294 (430)
Q Consensus       221 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~~~~l---~~~~~d~~i~iwd~~~~~~~~  294 (430)
                      +  .+++.+|++++.|+.|++||+++++.   .......+...|.+++++|++..+   ++++.++.|++||.+......
T Consensus       158 ~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~  235 (318)
T 4ggc_A          158 W--APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS  235 (318)
T ss_dssp             E--CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE
T ss_pred             E--cCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc
Confidence            9  88999999999999999999987542   245566678899999999987543   356678999999999988876


Q ss_pred             eeeCCCCCCeEEEEecCCCCeEEEEe--CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEe
Q 014154          295 CFIGKCSGSIRSIARHPTLPIIASCG--LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEI  371 (430)
Q Consensus       295 ~~~~~~~~~v~~i~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~  371 (430)
                      ....  ...+..+.|+|++..+++++  .|+.|+|||+.+++++..  +.+| ...|++++|+|+|++ ++++.|++|++
T Consensus       236 ~~~~--~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~--l~gH-~~~V~~l~~spdg~~l~S~s~D~~v~i  310 (318)
T 4ggc_A          236 AVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE--LKGH-TSRVLSLTMSPDGATVASAAADETLRL  310 (318)
T ss_dssp             EEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE--ECCC-SSCEEEEEECTTSSCEEEEETTTEEEE
T ss_pred             cccc--eeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE--EcCC-CCCEEEEEEcCCCCEEEEEecCCeEEE
Confidence            6654  56899999999999887765  799999999999999988  6788 556799999999998 99999999999


Q ss_pred             cCCCCC
Q 014154          372 QNGNDT  377 (430)
Q Consensus       372 ~~~~~~  377 (430)
                      |+..+.
T Consensus       311 Wd~~~~  316 (318)
T 4ggc_A          311 WRCFEL  316 (318)
T ss_dssp             ECCSCC
T ss_pred             EECCCC
Confidence            998653

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=4.2e-32  Score=247.83  Aligned_cols=286  Identities=11%  Similarity=0.019  Sum_probs=199.8

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      +.+..+..|...|.+++|    +|||++|++|+.+| ++||++.+++.......          ..+..+.+.....   
T Consensus        10 ~~~~~~~~h~~~V~~v~f----s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~----------~~~~~~~~~~~~~---   71 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEF----NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM----------RHLSKVRMLHRTN---   71 (355)
T ss_dssp             ---------CCCCCEEEE----CTTSSEEEEECSSE-EEEEEETTEEEEEEEEC----------SCCCEEEECTTSS---
T ss_pred             CCccccccCCCceEEEEE----CCCCCEEEEEcCCE-EEEEecCCcceeeeeec----------CCeEEEEEcCCCC---
Confidence            455566778888666555    67888999998765 78999887665443321          1233334433322   


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeE
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKC-EKIW  198 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~  198 (430)
                          ..+++++.++.+++|++....        .+..+  .+...|.+++++++.  ++++ .++.|++||+.++ +.+.
T Consensus        72 ----~~~~~~~~d~~v~iWd~~~~~--------~~~~~--~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~  134 (355)
T 3vu4_A           72 ----YVAFVTGVKEVVHIWDDVKKQ--------DVSRI--KVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRIT  134 (355)
T ss_dssp             ----EEEEECSSTTEEEEEETTTTE--------EEEEE--ECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSS
T ss_pred             ----EEEEEECCccEEEEEECCCCc--------EEEEE--ECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeE
Confidence                244667778899999975332        33433  356789999998754  4443 4779999999876 4443


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE--EeCCCcEEEEECCCCC--------------cc-eEEEeecCCCe
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA--GTNDHQVRLYDTSAQR--------------RP-VMSFDFRETPI  261 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~--------------~~-~~~~~~~~~~i  261 (430)
                      .+..            ....+++  ++  .++++  |+.+|.|++||+.++.              .+ +..+.+|...|
T Consensus       135 ~~~~------------~~~~~~~--s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v  198 (355)
T 3vu4_A          135 DDIR------------FGGVCEF--SN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPI  198 (355)
T ss_dssp             CCEE------------EEEEEEE--ET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCE
T ss_pred             Eecc------------CCceEEE--Ec--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCce
Confidence            3221            2334455  44  55665  5899999999999754              12 67889999999


Q ss_pred             EEEEecCCCCEEEEEeCCCc-EEEEEccCCeEEeeee-CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154          262 KAVAEEPDSFNIYIGNGSGD-LASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       262 ~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      ++++|+|++++|++|+.|++ |++||+++++++..+. ++|...|++++|+|++.+|++++.|++|+|||+..+......
T Consensus       199 ~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~  278 (355)
T 3vu4_A          199 KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRH  278 (355)
T ss_dssp             EEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSE
T ss_pred             EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccc
Confidence            99999999999999999998 9999999999999998 523899999999999999999999999999999765322111


Q ss_pred             E--------------------eeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          340 F--------------------LKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       340 ~--------------------~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .                    +..........++|+++|.. ++++.||.+++|+...
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          279 ALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             ETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             cccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            0                    11111111256899999988 8899999999998765

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.2e-31  Score=251.11  Aligned_cols=292  Identities=13%  Similarity=0.092  Sum_probs=210.1

Q ss_pred             cceeeecCCCceEEEEccCCCC------CcceeeeecCCCC------------CCcceeeeeecCCCCC--ceeEEeecC
Q 014154           15 LRALTFDSLGLIKVIEARGEHG------GVPKVVERWGDPH------------SSNCVLAASIDDSQND--PLLAVARKN   74 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~------~~~~~~~~~~~~~------------~~~~~~~~~~~~~p~g--~~l~~g~~d   74 (430)
                      ..|++|+.||.|+||++..+..      ...++...+.+|.            ..|..+++    +|++  .+|++++.|
T Consensus        41 ~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~----~~~~~~~~l~s~s~d  116 (447)
T 3dw8_B           41 ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW----LPQKNAAQFLLSTND  116 (447)
T ss_dssp             SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE----CCCCSSSEEEEEECS
T ss_pred             CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEE----cCCCCcceEEEeCCC
Confidence            5789999999999999987521      1223567788887            66555554    5555  689999999


Q ss_pred             CeEEEecCCCCcccceeec-------------cCCCC-------------------CCCCCCceEEEEEeecCccccccc
Q 014154           75 GLTDILNPLNGDLRVAISN-------------AGDSG-------------------AQPEDDGIVGLHLFKRQREESSSR  122 (430)
Q Consensus        75 g~i~iwd~~~~~~~~~~~~-------------~~~~~-------------------~~~~~~~i~~~~~~~~~~~~~~~~  122 (430)
                      |.|++||+.++........             .....                   ...+...+.++.+.+..       
T Consensus       117 ~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------  189 (447)
T 3dw8_B          117 KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-------  189 (447)
T ss_dssp             SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-------
T ss_pred             CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-------
Confidence            9999999976543211000             00000                   12456677777776643       


Q ss_pred             CceEEEEccCCeeEEEEeeecCccccCCCcceEEe------eecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe
Q 014154          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW------NVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCE  195 (430)
Q Consensus       123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~  195 (430)
                       ..++++ .++.+.+|++.....       .+.++      ...|...|.+++|+|++ ++|++|+.||.|++||+++++
T Consensus       190 -~~l~s~-~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          190 -ETYLSA-DDLRINLWHLEITDR-------SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             -SEEEEE-CSSEEEEEETTEEEE-------EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             -CEEEEe-CCCeEEEEECCCCCc-------eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence             377777 799999999863221       23332      12467889999999998 999999999999999999877


Q ss_pred             e----eEeeCCCCCCCC---CCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCC--------
Q 014154          196 K----IWTAKPPPKNSL---GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETP--------  260 (430)
Q Consensus       196 ~----~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------  260 (430)
                      .    ...+..+.....   ...+...|.+++|  +|++.+|++++. +.|++||++....++..+..|...        
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~  337 (447)
T 3dw8_B          261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKF--SHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLY  337 (447)
T ss_dssp             SSCTTCEEECCC-----CCHHHHHTTCEEEEEE--CTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred             cccceeeEeccCCCccccccccccCceEEEEEE--CCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccc
Confidence            6    566665531000   0001127999999  899999999999 999999999744567788887532        


Q ss_pred             -------eEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC--------------------------------CC
Q 014154          261 -------IKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK--------------------------------CS  301 (430)
Q Consensus       261 -------i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------~~  301 (430)
                             +..++|+|++++|++|+.||.|++||+.+++.+. +..+                                ..
T Consensus       338 ~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (447)
T 3dw8_B          338 ENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFN  416 (447)
T ss_dssp             HTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTT
T ss_pred             cccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccC
Confidence                   3349999999999999999999999999988753 2221                                13


Q ss_pred             CCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ..|..++|+|++.+|++++.++ +++|..+
T Consensus       417 ~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          417 KKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             SCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             CceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            5688999999999999998776 8888753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.4e-30  Score=236.55  Aligned_cols=276  Identities=12%  Similarity=0.062  Sum_probs=212.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCc-eeEEeecCCeEEEecC-CCCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGLTDILNP-LNGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~i~iwd~-~~~~~~~~~~   92 (430)
                      ..+++++.||.|+||++..+.  .......+..|...+..+  .+  +|+++ +|++|+.||.|++||+ .+++. ..+.
T Consensus        24 ~~l~~~~~d~~v~iw~~~~~~--~~~~~~~~~~~~~~v~~~--~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~   96 (342)
T 1yfq_A           24 SLLLITSWDGSLTVYKFDIQA--KNVDLLQSLRYKHPLLCC--NF--IDNTDLQIYVGTVQGEILKVDLIGSPSF-QALT   96 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETTT--TEEEEEEEEECSSCEEEE--EE--EESSSEEEEEEETTSCEEEECSSSSSSE-EECB
T ss_pred             CEEEEEcCCCeEEEEEeCCCC--ccccceeeeecCCceEEE--EE--CCCCCcEEEEEcCCCeEEEEEeccCCce-Eecc
Confidence            468899999999999999851  011233444677775544  44  56788 9999999999999999 77754 3332


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccC-CCcceEEeeecCCCceEEEEEc
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES-SCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      .      ..+...+.++.+.+ .        ..+++++.++.+.+|++......... ....+..  +.+...|.+++|+
T Consensus        97 ~------~~~~~~v~~l~~~~-~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~  159 (342)
T 1yfq_A           97 N------NEANLGICRICKYG-D--------DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTN  159 (342)
T ss_dssp             S------CCCCSCEEEEEEET-T--------TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEEC
T ss_pred             c------cCCCCceEEEEeCC-C--------CEEEEEcCCCeEEEEcccccccccccccCCeeeE--EeeCCceEEEEec
Confidence            2      01556888888876 3        59999999999999998641000000 0001222  2367889999999


Q ss_pred             CCCCEEEEEeCCCeEEEEECCC-Ceee--EeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCC
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDK-CEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQ  247 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~-~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~  247 (430)
                      |++  +++++.++.|++||+++ +...  .....+         ...+.+++|  +| ++.+|++++.||.|++|++...
T Consensus       160 ~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------~~~i~~i~~--~~~~~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          160 SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGL---------KYQIRDVAL--LPKEQEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSC---------SSCEEEEEE--CSGGGCEEEEEETTSEEEEEECCTT
T ss_pred             CCc--EEEEeCCCeEEEEECCccccccceeeecCC---------CCceeEEEE--CCCCCCEEEEEecCCcEEEEEEcCC
Confidence            877  99999999999999987 4432  222222         267999999  88 9999999999999999999876


Q ss_pred             -----CcceEEEeecCC---------CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154          248 -----RRPVMSFDFRET---------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       248 -----~~~~~~~~~~~~---------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  313 (430)
                           ..+...+..|..         .|.+++|+|++++|++++.||.|++||+.+++.+..+.+||...|.+++  |++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~  304 (342)
T 1yfq_A          227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSD  304 (342)
T ss_dssp             CCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECS
T ss_pred             CcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCC
Confidence                 256788888865         9999999999999999999999999999999999999987688999999  999


Q ss_pred             CeEEEEeCCCc-EEEEE
Q 014154          314 PIIASCGLDSY-LRFWD  329 (430)
Q Consensus       314 ~~l~s~~~dg~-i~iwd  329 (430)
                      .+|++++.||. .+.|.
T Consensus       305 ~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          305 NILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SEEEEEEECTHHHHCSS
T ss_pred             CeEEEEecCCccccccc
Confidence            99999999998 55554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-30  Score=243.43  Aligned_cols=290  Identities=14%  Similarity=0.110  Sum_probs=217.2

Q ss_pred             CcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc---ccceeeccCC-------------------------------
Q 014154           51 SNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD---LRVAISNAGD-------------------------------   96 (430)
Q Consensus        51 ~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~---~~~~~~~~~~-------------------------------   96 (430)
                      ++.+++  +  +|+|++|+++ .++.|++||+.+|+   .+..+.....                               
T Consensus         6 p~~~v~--~--s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (450)
T 2vdu_B            6 PLQNLL--T--SRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNK   80 (450)
T ss_dssp             CCCEEE--E--CSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC--------------------------------
T ss_pred             cEEEEE--e--cCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCc
Confidence            444555  4  6778866655 67899999999998   5555543211                               


Q ss_pred             ---------------CCCCCCCCceEEEEEeecCcccccccCceE-EEEccCCeeEEEEeeecCccccCCCcceEEeee-
Q 014154           97 ---------------SGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-  159 (430)
Q Consensus        97 ---------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-  159 (430)
                                     ....++.+.+.++.+.+...        .+ ++++.+|.+.+|++...      ....+..+.. 
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--------~l~~~~~~dg~v~iwd~~~~------~~~~~~~~~~~  146 (450)
T 2vdu_B           81 GDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--------RLIACADSDKSLLVFDVDKT------SKNVLKLRKRF  146 (450)
T ss_dssp             -------------------CCCCCEEEEEECTTSS--------EEEEEEGGGTEEEEEEECSS------SSSCEEEEEEE
T ss_pred             CccccccCccccCCCCCCCccCCceEEEEEcCCCC--------EEEEEECCCCeEEEEECcCC------CCceeeeeecc
Confidence                           00012333577777665443        54 78889999999998621      0124444432 


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----eeCCCCCCCCCCcCCcceeEEEEeecCC---CCEEEE
Q 014154          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDD---HRKFVA  232 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~l~s  232 (430)
                      .+...|.+++|+|++++|++++.+|.|++|++.++....    .+..         |...|.+++|  +|+   +.+|++
T Consensus       147 ~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~---------h~~~v~~~~~--sp~~~~~~~l~s  215 (450)
T 2vdu_B          147 CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILG---------HVSMLTDVHL--IKDSDGHQFIIT  215 (450)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEE---------CSSCEEEEEE--EECTTSCEEEEE
T ss_pred             cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeec---------ccCceEEEEE--cCCCCCCcEEEE
Confidence            456889999999999999999999999999998765432    2222         3377999999  778   889999


Q ss_pred             EeCCCcEEEEECCCCCcceEE-EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC------------
Q 014154          233 GTNDHQVRLYDTSAQRRPVMS-FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------  299 (430)
Q Consensus       233 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------  299 (430)
                      |+.|+.|++||+.++.. +.. +.+|...|.+++|+ ++++|++++.|+.|++||+++++++..+..+            
T Consensus       216 ~~~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  293 (450)
T 2vdu_B          216 SDRDEHIKISHYPQCFI-VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHL  293 (450)
T ss_dssp             EETTSCEEEEEESCTTC-EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSB
T ss_pred             EcCCCcEEEEECCCCce-eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccc
Confidence            99999999999998664 444 66899999999999 9999999999999999999999988887632            


Q ss_pred             ------------CCCCeEEEEecCCCCeEEEEe-CCCcEEEEEC--CCC---ceeeEEEeeccccceEEeeecccccccc
Q 014154          300 ------------CSGSIRSIARHPTLPIIASCG-LDSYLRFWDI--KTR---QLLSAVFLKQHLNEVVFDSAFADKEVAN  361 (430)
Q Consensus       300 ------------~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~~  361 (430)
                                  ....|.+++|+|++++|++++ .|+.|+||++  .++   +.+..  +.++  ..+.+++|+|++.++
T Consensus       294 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~--~~~~--~~v~~~~~~~~~~~v  369 (450)
T 2vdu_B          294 APPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQI--ITFP--YNVISLSAHNDEFQV  369 (450)
T ss_dssp             C----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEE--EECS--SCEEEEEEETTEEEE
T ss_pred             ccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccE--eccC--CceEEEEecCCcEEE
Confidence                        135789999999999999998 8999999999  555   44444  4455  457999999977664


Q ss_pred             ccCC-------CCceEecCCCC
Q 014154          362 AAAD-------APMLEIQNGND  376 (430)
Q Consensus       362 ~~~~-------d~~i~~~~~~~  376 (430)
                      +.+.       +..|.+|..+.
T Consensus       370 ~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          370 TLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EECCTTCCSSCCCSEEEEEEET
T ss_pred             EEecccCCCCCCcceEEEEEEc
Confidence            4332       55688887654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.3e-29  Score=233.07  Aligned_cols=274  Identities=14%  Similarity=0.100  Sum_probs=217.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ..+++++.|+.|++||+.++     +++..+..|..   +.++.+  +|+|++| ++++.|+.|++||+.+++.+..+..
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~-----~~~~~~~~~~~---~~~~~~--s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~   72 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN-----KVTATIPVGSN---PMGAVI--SPDGTKVYVANAHSNDVSIIDTATNNVIATVPA   72 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT-----EEEEEEECSSS---EEEEEE--CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEECCCC-----eEEEEeecCCC---cceEEE--CCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC
Confidence            35788999999999999987     77777776654   455666  7888877 6677999999999999988777654


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                      .         ..+.++.+.+...       ..++++..++.+.+|++....        .+...  .+...+.+++|+|+
T Consensus        73 ~---------~~v~~~~~spdg~-------~l~~~~~~~~~v~v~d~~~~~--------~~~~~--~~~~~~~~~~~s~d  126 (391)
T 1l0q_A           73 G---------SSPQGVAVSPDGK-------QVYVTNMASSTLSVIDTTSNT--------VAGTV--KTGKSPLGLALSPD  126 (391)
T ss_dssp             S---------SSEEEEEECTTSS-------EEEEEETTTTEEEEEETTTTE--------EEEEE--ECSSSEEEEEECTT
T ss_pred             C---------CCccceEECCCCC-------EEEEEECCCCEEEEEECCCCe--------EEEEE--eCCCCcceEEECCC
Confidence            2         3666676655433       233566677999999975332        33333  34567899999999


Q ss_pred             CCEE-EEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE-EEEeCCCcEEEEECCCCCcce
Q 014154          174 EKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       174 ~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~  251 (430)
                      +++| ++++.++.|++||+.+++.+..+..+          ..+.+++|  +|++..| ++++.++.|++||++++. .+
T Consensus       127 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----------~~~~~~~~--~~dg~~l~~~~~~~~~v~~~d~~~~~-~~  193 (391)
T 1l0q_A          127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVG----------RSPKGIAV--TPDGTKVYVANFDSMSISVIDTVTNS-VI  193 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECC----------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTE-EE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCcEEEEEecC----------CCcceEEE--CCCCCEEEEEeCCCCEEEEEECCCCe-EE
Confidence            9987 67788999999999999888777654          34688899  8899877 677788999999999864 34


Q ss_pred             EEEeecCCCeEEEEecCCCCEEEEEe---CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE-EEEeCCCcEEE
Q 014154          252 MSFDFRETPIKAVAEEPDSFNIYIGN---GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGLDSYLRF  327 (430)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~i~i  327 (430)
                      ..+. +...+.+++|+|++++|++++   .++.|++||+++++.+..+..+  ..+.+++|+|++++| ++++.|+.|++
T Consensus       194 ~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~~v~v  270 (391)
T 1l0q_A          194 DTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFXNTVSV  270 (391)
T ss_dssp             EEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecC--CCccEEEEccCCCEEEEEcCCCCEEEE
Confidence            4554 456889999999999999888   6899999999999999888875  358899999999877 67788999999


Q ss_pred             EECCCCceeeEEE
Q 014154          328 WDIKTRQLLSAVF  340 (430)
Q Consensus       328 wd~~~~~~~~~~~  340 (430)
                      ||+.+++.+..+.
T Consensus       271 ~d~~~~~~~~~~~  283 (391)
T 1l0q_A          271 IDTATNTITATMA  283 (391)
T ss_dssp             EETTTTEEEEEEE
T ss_pred             EECCCCcEEEEEE
Confidence            9999999888753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=4.4e-30  Score=224.73  Aligned_cols=299  Identities=9%  Similarity=0.030  Sum_probs=199.0

Q ss_pred             cceeeeecCCCCCCcceee---eeecCCCCCc--eeEEeecCCeEEEecCCCC---cccceeeccCCCCCCCCCCceEEE
Q 014154           38 VPKVVERWGDPHSSNCVLA---ASIDDSQNDP--LLAVARKNGLTDILNPLNG---DLRVAISNAGDSGAQPEDDGIVGL  109 (430)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~---~~~~~~p~g~--~l~~g~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~~  109 (430)
                      ..+++..++...+.. .+.   +-|. .+..+  -++++ ....|++|+..++   +.++++..        +..++.++
T Consensus        24 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~-~~~~v~lw~~~~~~~~~~~~~~~~--------~~~~v~~~   92 (356)
T 2w18_A           24 NLQLVSELKNPSGSC-SVDVSAMFWE-RAGCKEPCIITA-CEDVVSLWKALDAWQWEKLYTWHF--------AEVPVLQI   92 (356)
T ss_dssp             CEEEEEEECCCCSSC-EEEEEEEEEC-----CEEEEEEE-ESSEEEEEEESSSSBEEEEEEEEC--------CSSCEEEE
T ss_pred             eeeeeehhcCCCCCe-EEEEeeeeec-cCCCCccEEEEe-ccceEEEcccCCCccceeeEEEec--------cCceeEEE
Confidence            346677777665442 232   2231 22222  34444 4589999999988   66666654        33466666


Q ss_pred             EEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe--CCCeEE
Q 014154          110 HLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG--KGVEVN  187 (430)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~  187 (430)
                      .+.+...      +-.+++-+.-....|+.+.++++     |+.+..+....+..+.-..+ ++++++.+++  .|+.|+
T Consensus        93 ~~~~~~~------~~~~~~~~~~~~~~v~sla~spd-----~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~  160 (356)
T 2w18_A           93 VPVPDVY------NLVCVALGNLEIREIRALFCSSD-----DESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLSDQQVE  160 (356)
T ss_dssp             CCCTTCC------SCEEEEECSSSEEEEEEECC-----------CCEEEEEEEEEEEEEEE-TTTEEEEEESSSTTCEEE
T ss_pred             EEcCccc------ceeeeeeccccccceEEEEECCC-----ccccccEEEeCCCeEEEEec-CCCcEEEecccCCCCcEE
Confidence            5554333      02344444445667777777663     22333333222222222223 4666666644  599999


Q ss_pred             EEEC-CCCeeeEeeCCCCCCCCCCcCCcceeEEEEee-cCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC---CCeE
Q 014154          188 VWDL-DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-IDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---TPIK  262 (430)
Q Consensus       188 ~~d~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~i~  262 (430)
                      +|++ .+++.+..+..+.         ..+..++|.+ +-++.+|++++.|++|+|||+.+++ .+.++.+|.   ..+.
T Consensus       161 ~~~~s~dG~~~~s~~~~~---------~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-~l~tL~g~~~~v~~v~  230 (356)
T 2w18_A          161 VMTFAEDGGGKENQFLMP---------PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-LLKKMHIDDSYQASVC  230 (356)
T ss_dssp             EEEECTTSCEEEEEEECC---------CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-EEEEEECCC---CCCE
T ss_pred             EEEECCCCceeeeeccCC---------CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-EEEEEcCCCcceeeeE
Confidence            9999 4477766665554         5578888842 2277999999999999999999976 477887653   3677


Q ss_pred             EEEecCCCCEE------------EEEeCCCcEEEEEccCCeEEeee-----eCCCCCCeEEEEecCCCCeEEEEeCCCcE
Q 014154          263 AVAEEPDSFNI------------YIGNGSGDLASVDIRTGKLLGCF-----IGKCSGSIRSIARHPTLPIIASCGLDSYL  325 (430)
Q Consensus       263 ~~~~sp~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~-----~~~~~~~v~~i~~~~~~~~l~s~~~dg~i  325 (430)
                      +++|+|++.++            ++|+.|++|++||..+++.+..+     .+| ...+.+..+  ++.++++++.|++|
T Consensus       231 ~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh-~~~~lsg~~--sg~~lASgS~DgTI  307 (356)
T 2w18_A          231 HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQ-AGRFLEGDV--KDHCAAAILTSGTI  307 (356)
T ss_dssp             EEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTC-CCCEEEEEE--ETTEEEEEETTSCE
T ss_pred             EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCC-cceeEcccc--CCCEEEEEcCCCcE
Confidence            88999999876            56788999999999999987765     255 455554444  48899999999999


Q ss_pred             EEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154          326 RFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       326 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      +|||+.+++++.+  +.+|....+..++|+|||++ ++++.|++|+||+.
T Consensus       308 kIWDl~tGk~l~t--L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          308 AIWDLLLGQCTAL--LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEETTTCSEEEE--ECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCcEEEE--ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999999998  67786666567899999998 89999999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-31  Score=265.16  Aligned_cols=252  Identities=11%  Similarity=0.083  Sum_probs=201.8

Q ss_pred             eecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccccc
Q 014154           43 ERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSR  122 (430)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  122 (430)
                      ..+.+|.+.|.++  .+  +|+|++|++|+.||.|+|||+.++..                                   
T Consensus         3 ~~l~gH~~~V~~l--~~--s~dg~~latg~~dg~I~vwd~~~~~~-----------------------------------   43 (753)
T 3jro_A            3 VIANAHNELIHDA--VL--DYYGKRLATCSSDKTIKIFEVEGETH-----------------------------------   43 (753)
T ss_dssp             -----CCCCEEEE--CC--CSSSCCEEEEETTTEEEEEEEETTEE-----------------------------------
T ss_pred             eecccCcceeEEE--EE--CCCCCeEEEEECCCcEEEEecCCCCC-----------------------------------
Confidence            4577899885544  44  67888999999999999999752210                                   


Q ss_pred             CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCe--eeE
Q 014154          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCE--KIW  198 (430)
Q Consensus       123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~--~~~  198 (430)
                        .                           .+..+ ..|...|.+++|+|+  +++|++|+.||.|++||+.+++  .+.
T Consensus        44 --~---------------------------~~~~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~   93 (753)
T 3jro_A           44 --K---------------------------LIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIA   93 (753)
T ss_dssp             --E---------------------------EEEEE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             --c---------------------------cceec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccc
Confidence              0                           00011 145678999999987  9999999999999999999886  556


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEEEEECCCCC-cceEEEeecCCCeEEEEecC-------
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQR-RPVMSFDFRETPIKAVAEEP-------  268 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~i~~~~~sp-------  268 (430)
                      .+..+.         ..|.+++|  +|+  +.++++|+.||.|++||++.+. .....+..|...|.+++|+|       
T Consensus        94 ~~~~h~---------~~V~~v~~--sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           94 VHAVHS---------ASVNSVQW--APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EECCCS---------SCEEEEEE--CCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             cccCCC---------CCeEEEEE--CCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            665554         77999999  777  9999999999999999998753 23566788999999999999       


Q ss_pred             ------CCCEEEEEeCCCcEEEEEccCC----eEEeeeeCCCCCCeEEEEecCC---CCeEEEEeCCCcEEEEECCCCce
Q 014154          269 ------DSFNIYIGNGSGDLASVDIRTG----KLLGCFIGKCSGSIRSIARHPT---LPIIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       269 ------~~~~l~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~i~iwd~~~~~~  335 (430)
                            ++.+|++|+.||.|++||++++    .+...+.+| ...|++++|+|+   +.+|++++.||.|++||+.+++.
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~  241 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  241 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence                  5899999999999999999887    566778887 899999999999   89999999999999999998642


Q ss_pred             eeE---EEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          336 LSA---VFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       336 ~~~---~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      ...   ....+| ...+++++|+|+|.+ ++++.||.|++|+...
T Consensus       242 ~~~~~~~~~~~~-~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          242 PWKKTLLKEEKF-PDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CCBCCBSSSSCC-SSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             cceeEEeccCCC-CCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            211   112334 556799999999998 8899999999999875

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.4e-30  Score=226.42  Aligned_cols=279  Identities=10%  Similarity=-0.014  Sum_probs=174.1

Q ss_pred             CCCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCc-eeEEeecCCe---EEEecCCC
Q 014154            9 CPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDP-LLAVARKNGL---TDILNPLN   84 (430)
Q Consensus         9 ~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~-~l~~g~~dg~---i~iwd~~~   84 (430)
                      .++|..+.++++++ ..|++|+...+  -..+.+.+|..|+.+|..+.+    .||-. ++.++-.+=.   |+..-+..
T Consensus        49 ~~~~~~~~~~~~~~-~~v~lw~~~~~--~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~v~sla~sp  121 (356)
T 2w18_A           49 RAGCKEPCIITACE-DVVSLWKALDA--WQWEKLYTWHFAEVPVLQIVP----VPDVYNLVCVALGNLEIREIRALFCSS  121 (356)
T ss_dssp             ----CEEEEEEEES-SEEEEEEESSS--SBEEEEEEEECCSSCEEEECC----CTTCCSCEEEEECSSSEEEEEEECC--
T ss_pred             cCCCCccEEEEecc-ceEEEcccCCC--ccceeeEEEeccCceeEEEEE----cCcccceeeeeeccccccceEEEEECC
Confidence            45666677888876 57999999984  444677888888877443333    33222 2222211100   11000000


Q ss_pred             C-cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc---cCCeeEEEEeeecCccccCCCcceEEeeec
Q 014154           85 G-DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT---TKGKASMRSIEVTKVSAESSCSTVKSWNVC  160 (430)
Q Consensus        85 ~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~  160 (430)
                      . +........        .+  ....+|....       +.++..+   .++.+++|++..        ++....=...
T Consensus       122 d~~~~~~~l~s--------~g--~~~~v~~l~~-------g~lv~ss~~g~d~~V~~~~~s~--------dG~~~~s~~~  176 (356)
T 2w18_A          122 DDESEKQVLLK--------SG--NIKAVLGLTK-------RRLVSSSGTLSDQQVEVMTFAE--------DGGGKENQFL  176 (356)
T ss_dssp             ----CCEEEEE--------EE--EEEEEEEETT-------TEEEEEESSSTTCEEEEEEECT--------TSCEEEEEEE
T ss_pred             CccccccEEEe--------CC--CeEEEEecCC-------CcEEEecccCCCCcEEEEEECC--------CCceeeeecc
Confidence            0 000000000        00  0012222222       3444443   366677776532        1222221224


Q ss_pred             CCCceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE-------
Q 014154          161 ASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-------  230 (430)
Q Consensus       161 ~~~~i~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-------  230 (430)
                      |...+..++|++   ++.+|++++.|++|+|||+.+++.+.++..+...      ...+.+++|  +|++.++       
T Consensus       177 ~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~------v~~v~~vaf--SpdG~~lvs~s~~~  248 (356)
T 2w18_A          177 MPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY------QASVCHKAY--SEMGLLFIVLSHPC  248 (356)
T ss_dssp             CCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------CCCEEEEE--EETTEEEEEEC---
T ss_pred             CCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc------eeeeEEEEE--CCCCCEEEEeccCC
Confidence            566777888888   7899999999999999999999999988754311      135777889  7788876       


Q ss_pred             -----EEEeCCCcEEEEECCCCCcceEEE-----eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC
Q 014154          231 -----VAGTNDHQVRLYDTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC  300 (430)
Q Consensus       231 -----~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  300 (430)
                           ++|+.|++|++||..+++. +..+     .+|...+.+..++  +.++++|+.|++|+|||+.+++++.++.+|+
T Consensus       249 ~~w~laSGs~D~tIklWd~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~  325 (356)
T 2w18_A          249 AKESESLRSPVFQLIVINPKTTLS-VGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVS  325 (356)
T ss_dssp             ---------CCEEEEEEETTTTEE-EEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC-
T ss_pred             CcceeeccCCCcEEEEEECCCCEE-EEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCC
Confidence                 6688999999999998653 4443     3565555444444  7799999999999999999999999999883


Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      ...+..++|+|+|++|++|+.|++|+|||+
T Consensus       326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             -CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            334556899999999999999999999995

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=4.1e-30  Score=241.07  Aligned_cols=258  Identities=14%  Similarity=0.140  Sum_probs=203.5

Q ss_pred             ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC----------CcccceeeccCCCCCCCCCCceEEEEEee
Q 014154           44 RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN----------GDLRVAISNAGDSGAQPEDDGIVGLHLFK  113 (430)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  113 (430)
                      ....|.+.+..++++.+   ++.+||+++.+|.|++|++.+          ...+..+..        +...+.++.|.+
T Consensus       123 ~~~~h~~~v~~l~~~p~---~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~--------h~~~v~~l~~~~  191 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQ---NACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG--------HQKEGYGLSWNP  191 (430)
T ss_dssp             EEEEESSCCSEEEEETT---EEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC--------CSSCCCCEEECT
T ss_pred             EEEcCCCcEEEEEECCC---CCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC--------CCCCeEEEEeCC
Confidence            34458888776666541   257899999999999999976          344444443        344667777766


Q ss_pred             cCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 014154          114 RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLD  192 (430)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~  192 (430)
                      ...       +.+++++.+|.+.+|++....... ..-.....+. .|...|.+++|+| ++.+|++++.|+.|++||++
T Consensus       192 ~~~-------~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          192 NLN-------GYLLSASDDHTICLWDINATPKEH-RVIDAKNIFT-GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             TST-------TEEEEECTTSCEEEEETTSCCBGG-GEEECSEEEC-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CCC-------CeEEEEeCCCeEEEEeCCCCCCCC-ceeccceeec-CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            543       589999999999999986532100 0000123333 5778999999999 78899999999999999998


Q ss_pred             CC---eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC
Q 014154          193 KC---EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP  268 (430)
Q Consensus       193 ~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp  268 (430)
                      ++   ..+..+..+.         ..|++++|  +|++. +|++|+.||.|++||++....++..+..|...|.+++|+|
T Consensus       263 ~~~~~~~~~~~~~~~---------~~v~~i~~--~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          263 NNNTSKPSHTVDAHT---------AEVNCLSF--NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             CSCSSSCSEEEECCS---------SCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECS
T ss_pred             CCCCCcceeEeecCC---------CCeEEEEe--CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECC
Confidence            76   3455554443         67999999  78776 7999999999999999986667889999999999999999


Q ss_pred             CCC-EEEEEeCCCcEEEEEccC--------------CeEEeeeeCCCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECCC
Q 014154          269 DSF-NIYIGNGSGDLASVDIRT--------------GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       269 ~~~-~l~~~~~d~~i~iwd~~~--------------~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~~  332 (430)
                      ++. +|++++.|+.|++||+..              .+++..+.+| ...|++++|+|+++ +|++++.||.|+||++..
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            985 689999999999999987              3667777787 88999999999998 899999999999999875


Q ss_pred             C
Q 014154          333 R  333 (430)
Q Consensus       333 ~  333 (430)
                      .
T Consensus       411 ~  411 (430)
T 2xyi_A          411 N  411 (430)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.1e-30  Score=238.69  Aligned_cols=241  Identities=15%  Similarity=0.119  Sum_probs=190.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|++|+.||.|+||++..+   ..+.+..+.+|...+..++++.  ..++++|++|+.||.|++||+.+++...     
T Consensus        24 ~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~h~~~v~~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~-----   93 (379)
T 3jrp_A           24 KRLATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKVLIWKEENGRWSQ-----   93 (379)
T ss_dssp             SEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECC--GGGCSEEEEEETTSCEEEEEEETTEEEE-----
T ss_pred             CEEEEEECCCcEEEEecCCC---cceeeeEecCCCCcEEEEEeCC--CCCCCEEEEeccCCEEEEEEcCCCceeE-----
Confidence            46889999999999999842   1156778889999876666654  3347899999999999999986543100     


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-  173 (430)
                                                                                 +..+ ..|...|.+++|+|+ 
T Consensus        94 -----------------------------------------------------------~~~~-~~~~~~v~~~~~~~~~  113 (379)
T 3jrp_A           94 -----------------------------------------------------------IAVH-AVHSASVNSVQWAPHE  113 (379)
T ss_dssp             -----------------------------------------------------------EEEE-CCCSSCEEEEEECCGG
T ss_pred             -----------------------------------------------------------eeee-cCCCcceEEEEeCCCC
Confidence                                                                       0000 134577899999998 


Q ss_pred             -CCEEEEEeCCCeEEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecC-------------CCCEEEEEeCCC
Q 014154          174 -EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSID-------------DHRKFVAGTNDH  237 (430)
Q Consensus       174 -~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~s~~~dg  237 (430)
                       +.+|++++.|+.|++||+.+...  ...+..+.         ..|.+++|  +|             ++.+|++++.|+
T Consensus       114 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg  182 (379)
T 3jrp_A          114 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHA---------IGVNSASW--APATIEEDGEHNGTKESRKFVTGGADN  182 (379)
T ss_dssp             GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCT---------TCEEEEEE--CCCC----------CTTCEEEEEETTS
T ss_pred             CCCEEEEecCCCcEEEEecCCCCceeeEEecCCC---------CceEEEEE--cCccccccccccCCCCCCEEEEEeCCC
Confidence             99999999999999999987633  22333332         67999999  66             689999999999


Q ss_pred             cEEEEECCCCCc---ceEEEeecCCCeEEEEecCC---CCEEEEEeCCCcEEEEEccCCe-----EEeeeeCCCCCCeEE
Q 014154          238 QVRLYDTSAQRR---PVMSFDFRETPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRS  306 (430)
Q Consensus       238 ~i~iwd~~~~~~---~~~~~~~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~v~~  306 (430)
                      .|++||++.+..   +...+.+|...|.+++|+|+   +.+|++++.||.|++||++++.     .+.....| ...|++
T Consensus       183 ~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~  261 (379)
T 3jrp_A          183 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWR  261 (379)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEE
T ss_pred             eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC-CCcEEE
Confidence            999999987543   34567789999999999999   8999999999999999999863     22222335 789999


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECCCCceee
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  337 (430)
                      ++|+|++.+|++++.||.|++|++.......
T Consensus       262 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  292 (379)
T 3jrp_A          262 ASWSLSGNVLALSGGDNKVTLWKENLEGKWE  292 (379)
T ss_dssp             EEECSSSCCEEEEESSSSEEEEEEEETTEEE
T ss_pred             EEEcCCCCEEEEecCCCcEEEEeCCCCCccc
Confidence            9999999999999999999999998654433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=5.2e-30  Score=232.96  Aligned_cols=248  Identities=19%  Similarity=0.226  Sum_probs=201.5

Q ss_pred             CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC--CCCEEE
Q 014154          101 PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI--SEKFSL  178 (430)
Q Consensus       101 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~--~~~~l~  178 (430)
                      +|.+.|.++.+.+..        ..+++++.+|.+++|++.....    ....+..+. .|...|.+++|+|  ++++|+
T Consensus         9 gH~~~v~~~~~~~~~--------~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~   75 (351)
T 3f3f_A            9 GHDDLVHDVVYDFYG--------RHVATCSSDQHIKVFKLDKDTS----NWELSDSWR-AHDSSIVAIDWASPEYGRIIA   75 (351)
T ss_dssp             CCSSCEEEEEECSSS--------SEEEEEETTSEEEEEEECSSSC----CEEEEEEEE-CCSSCEEEEEECCGGGCSEEE
T ss_pred             ccccceeEEEEcCCC--------CEEEEeeCCCeEEEEECCCCCC----cceecceec-cCCCcEEEEEEcCCCCCCEEE
Confidence            456788888886644        4899999999999999864321    001233333 5788999999999  599999


Q ss_pred             EEeCCCeEEEEECCCC---------eeeEeeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEEEEECCCC
Q 014154          179 FGGKGVEVNVWDLDKC---------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVRLYDTSAQ  247 (430)
Q Consensus       179 ~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~iwd~~~~  247 (430)
                      +++.||.|++||+.++         +.+..+..+.         ..|.+++|  +|+  +.+|++++.|+.|++||++++
T Consensus        76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~--~~~~~~~~l~~~~~dg~v~iwd~~~~  144 (351)
T 3f3f_A           76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSK---------GSLYSVKF--APAHLGLKLACLGNDGILRLYDALEP  144 (351)
T ss_dssp             EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCS---------SCEEEEEE--CCGGGCSEEEEEETTCEEEEEECSST
T ss_pred             EEcCCCeEEEEecCCCcccccccCcceeeeecccC---------CceeEEEE--cCCCCCcEEEEecCCCcEEEecCCCh
Confidence            9999999999999876         4456666554         77999999  788  999999999999999999876


Q ss_pred             CcceEEEe-------------ecCCCeEEEEecCC---CCEEEEEeCCCcEEEEEccCCeE--EeeeeCCCCCCeEEEEe
Q 014154          248 RRPVMSFD-------------FRETPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGKL--LGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       248 ~~~~~~~~-------------~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~  309 (430)
                      .. +..+.             .|...+.+++|+|+   +.+|++++.++.+.+|+...++.  +..+.+| ...|++++|
T Consensus       145 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~i~~~~~  222 (351)
T 3f3f_A          145 SD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH-KSLIRSISW  222 (351)
T ss_dssp             TC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCC-CSCEEEEEE
T ss_pred             HH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCC-CcceeEEEE
Confidence            53 22211             46778999999997   89999999999998888887765  6677787 899999999


Q ss_pred             cCCC----CeEEEEeCCCcEEEEECCCC----------------------------------------------ceeeEE
Q 014154          310 HPTL----PIIASCGLDSYLRFWDIKTR----------------------------------------------QLLSAV  339 (430)
Q Consensus       310 ~~~~----~~l~s~~~dg~i~iwd~~~~----------------------------------------------~~~~~~  339 (430)
                      +|++    .+|++++.||.|++||++++                                              +.+.. 
T Consensus       223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  301 (351)
T 3f3f_A          223 APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE-  301 (351)
T ss_dssp             CCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE-
T ss_pred             CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE-
Confidence            9998    79999999999999999875                                              33333 


Q ss_pred             EeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          340 FLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       340 ~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                       +.+| ...|++++|+|++.+ ++++.|+.|++|+....
T Consensus       302 -~~~h-~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          302 -HDDH-NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             -ECTT-SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             -Eecc-cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence             5567 456799999999998 99999999999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=5.8e-29  Score=233.60  Aligned_cols=312  Identities=8%  Similarity=-0.014  Sum_probs=232.5

Q ss_pred             eecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCC
Q 014154           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG   98 (430)
Q Consensus        19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~   98 (430)
                      ++.+++.++||.+... .+..+.+..+..+..   ..++.+  +|++.++++++.++.|++||+.+++....+...   .
T Consensus        94 ~~~~~~~~~l~~~d~~-~~~~~~~~~~~~~~~---~~~~~~--s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---~  164 (433)
T 3bws_A           94 RKPEELNEKLIALDKE-GITHRFISRFKTGFQ---PKSVRF--IDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE---K  164 (433)
T ss_dssp             SSGGGGTTCEEECCBT-TCSEEEEEEEECSSC---BCCCEE--SSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH---H
T ss_pred             cccCCCceEEEEECCC-CCcceEEEEEcCCCC---ceEEEE--eCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc---c
Confidence            5667776777766542 112234444544433   234555  667778888889999999999988876533210   0


Q ss_pred             CCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEE
Q 014154           99 AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSL  178 (430)
Q Consensus        99 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~  178 (430)
                      +..+...+.++.+ ....       ..+++++.++.+.+|++....        .+..+. .+...+.+++|+|++++++
T Consensus       165 ~~~~~~~v~~~~~-~~~~-------~~~~s~~~d~~v~~~d~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~l~  227 (433)
T 3bws_A          165 YKKKLGFVETISI-PEHN-------ELWVSQMQANAVHVFDLKTLA--------YKATVD-LTGKWSKILLYDPIRDLVY  227 (433)
T ss_dssp             HHTTCCEEEEEEE-GGGT-------EEEEEEGGGTEEEEEETTTCC--------EEEEEE-CSSSSEEEEEEETTTTEEE
T ss_pred             ccccCCceeEEEE-cCCC-------EEEEEECCCCEEEEEECCCce--------EEEEEc-CCCCCeeEEEEcCCCCEEE
Confidence            1133456776666 3322       478889999999999975322        344443 5677899999999999886


Q ss_pred             EEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe--------CCCcEEEEECCCCCc
Q 014154          179 FGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--------NDHQVRLYDTSAQRR  249 (430)
Q Consensus       179 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~  249 (430)
                      +++ .++.|++||+.+++.+..+..+          ..+.+++|  +|++.+|++++        .|+.|++||+.+++.
T Consensus       228 ~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~--~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~  295 (433)
T 3bws_A          228 CSNWISEDISVIDRKTKLEIRKTDKI----------GLPRGLLL--SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL  295 (433)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECCCC----------SEEEEEEE--CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE
T ss_pred             EEecCCCcEEEEECCCCcEEEEecCC----------CCceEEEE--cCCCCEEEEEECCCCccccCCCeEEEEECCCCcE
Confidence            554 7999999999999888776653          45889999  89999999888        588999999998642


Q ss_pred             ceEEEeecCCCeEEEEecCCCCEE-EEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC-------
Q 014154          250 PVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL-------  321 (430)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-------  321 (430)
                       +..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..  ...+.+++|+|++++|++++.       
T Consensus       296 -~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~  371 (433)
T 3bws_A          296 -IDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDGKYLYVSCRGPNHPTE  371 (433)
T ss_dssp             -EEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEECCCCCTTT
T ss_pred             -Eeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCCCEEEEEecCCCcccc
Confidence             4433 455688999999999755 5668899999999999998888863  678999999999998888876       


Q ss_pred             --------CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC-CCCceEecCCCC
Q 014154          322 --------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAPMLEIQNGND  376 (430)
Q Consensus       322 --------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~-~d~~i~~~~~~~  376 (430)
                              ||.|++||+.+++.+..+.  .+  ..+.+++|+|+|++ ++++ .|+.|++|+.+.
T Consensus       372 ~~~~~g~~dg~v~~~d~~~~~~~~~~~--~~--~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          372 GYLKKGLVLGKVYVIDTTTDTVKEFWE--AG--NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CTTSCCSSCCEEEEEETTTTEEEEEEE--CS--SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             ccccccccceEEEEEECCCCcEEEEec--CC--CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence                    5799999999999888743  32  34689999999988 5554 599999998753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.98  E-value=6.1e-31  Score=244.74  Aligned_cols=262  Identities=9%  Similarity=0.030  Sum_probs=193.4

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      +.+++|  +|||+++|+++.|++|+  |...++   .+.+        |...+.++.+.+.         +      .++
T Consensus        18 v~sv~~--SpDG~~iASas~D~TV~--d~~~~~---~l~g--------h~~~v~~V~FsPd---------g------~~~   67 (588)
T 2j04_A           18 KNNLTW--ARDGTLYLTTFPDISIG--QPKYAK---DINC--------NSKNLFHVKEFPL---------E------FEN   67 (588)
T ss_dssp             SCCEEE--CTTSCEEEECSSSEEEE--EECCCS---CCSS--------BGGGTEEEEEECC---------C------CCC
T ss_pred             EEEEEE--CCCCCEEEEEcCCceee--cccccc---eecC--------CCccEEEEEECCC---------C------Ccc
Confidence            445555  88999999999999999  643333   2222        3345555555442         1      122


Q ss_pred             eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  213 (430)
                      ...+|...           ...+....+...|.+++|+|+|.+||+++.||.|++||.+.  .+..+. +....    ..
T Consensus        68 ~~~~~~~~-----------~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~----~~  129 (588)
T 2j04_A           68 KLDFELAQ-----------QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL----SS  129 (588)
T ss_dssp             TTTTSCCC-----------SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS----TT
T ss_pred             eEEEEeCC-----------CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc----cc
Confidence            22222211           11122334467899999999999999999999999999654  444444 32110    01


Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc------ceEEE----eecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSF----DFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~----~~~~~~i~~~~~sp~~~~l~~~~~d~~i~  283 (430)
                      ..+.+++|  +|+|++|++|+.||+|++||+..+..      .+..+    .+|...|.+++|+|+|  +++++.|+.|+
T Consensus       130 ~sv~svaf--SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVr  205 (588)
T 2j04_A          130 RTYHCFEW--NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVF  205 (588)
T ss_dssp             TCEEEEEE--CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEE
T ss_pred             ccEEEEEE--cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEE
Confidence            35899999  99999999999999999999998542      25666    5577899999999999  88889999999


Q ss_pred             EEEccCCeE---Eeeee-CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeec--ccc
Q 014154          284 SVDIRTGKL---LGCFI-GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF--ADK  357 (430)
Q Consensus       284 iwd~~~~~~---~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~--s~~  357 (430)
                      +||+..++.   ..++. +| ...|.+++|+  +.+|++++ ++.|++||+.+++....  ..+| ...+++++|  +||
T Consensus       206 lWd~~~~~~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~--~~gh-~~~V~~va~~~s~d  278 (588)
T 2j04_A          206 SMTVSASSHQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL--KTGS-LENFHIIPLNHEKE  278 (588)
T ss_dssp             EECCCSSSSCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE--ECSC-CSCCCEEEETTCSS
T ss_pred             EEECCCCccccceeeecccc-cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE--EcCC-CceEEEEEeeeCCC
Confidence            999988773   34564 55 7899999999  68899987 69999999998777433  2267 555799999  999


Q ss_pred             ccc-cccCCCCceEecCCC
Q 014154          358 EVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       358 g~~-~~~~~d~~i~~~~~~  375 (430)
                      +.. +++..+|. ++|..+
T Consensus       279 ~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          279 STILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CEEEEECSSCEE-EEEESS
T ss_pred             CCEEEEEcCCCC-EEEeec
Confidence            988 88888999 999876

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=8.8e-30  Score=233.44  Aligned_cols=275  Identities=9%  Similarity=0.043  Sum_probs=207.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|++|+.||.|+||++....   ..+...+.+|...+.  ++.|  +|++++|++|+.||.|++||+.+++.+... . 
T Consensus        55 ~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~~h~~~v~--~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-~-  125 (368)
T 3mmy_A           55 NFLIAGSWANDVRCWEVQDSG---QTIPKAQQMHTGPVL--DVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQIA-Q-  125 (368)
T ss_dssp             EEEEEEETTSEEEEEEECTTS---CEEEEEEEECSSCEE--EEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEE-E-
T ss_pred             eEEEEECCCCcEEEEEcCCCC---ceeEEEeccccCCEE--EEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceeec-c-
Confidence            579999999999999998620   133366777888854  5555  678889999999999999999888765532 2 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                             +...+.++.+.+...      ...+++++.++.+.+|++....        .+..+..  ...+.++.+.  .
T Consensus       126 -------~~~~v~~~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~--------~~~~~~~--~~~~~~~~~~--~  180 (368)
T 3mmy_A          126 -------HDAPVKTIHWIKAPN------YSCVMTGSWDKTLKFWDTRSSN--------PMMVLQL--PERCYCADVI--Y  180 (368)
T ss_dssp             -------CSSCEEEEEEEECSS------CEEEEEEETTSEEEEECSSCSS--------CSEEEEC--SSCEEEEEEE--T
T ss_pred             -------ccCceEEEEEEeCCC------CCEEEEccCCCcEEEEECCCCc--------EEEEEec--CCCceEEEec--C
Confidence                   345788888743222      1478999999999999986433        4444442  3456666665  4


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC--CEEEEEeCCCcEEEEECCCCC--cc
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH--RKFVAGTNDHQVRLYDTSAQR--RP  250 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~--~~  250 (430)
                      ..+++++.++.+.+|++.............       ....+.++.+...+..  ..+++++.|+.|++||++...  ..
T Consensus       181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~  253 (368)
T 3mmy_A          181 PMAVVATAERGLIVYQLENQPSEFRRIESP-------LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKD  253 (368)
T ss_dssp             TEEEEEEGGGCEEEEECSSSCEEEEECCCS-------CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHH
T ss_pred             CeeEEEeCCCcEEEEEeccccchhhhcccc-------ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccc
Confidence            588889999999999998765544332221       1133555555323322  339999999999999999753  34


Q ss_pred             eEEEeecCC------------CeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEE
Q 014154          251 VMSFDFRET------------PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (430)
Q Consensus       251 ~~~~~~~~~------------~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s  318 (430)
                      +..+..|..            .|++++|+|++++|++++.||.|++||+++++++..+.+| ...|++++|+|++.+|++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~~  332 (368)
T 3mmy_A          254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL-DQPISACCFNHNGNIFAY  332 (368)
T ss_dssp             SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSCEEEEEECTTSSCEEE
T ss_pred             ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC-CCCceEEEECCCCCeEEE
Confidence            667777765            7999999999999999999999999999999999999998 899999999999999999


Q ss_pred             EeCCCcEEEEECC
Q 014154          319 CGLDSYLRFWDIK  331 (430)
Q Consensus       319 ~~~dg~i~iwd~~  331 (430)
                      ++.|+..+.|++-
T Consensus       333 ~s~d~~~~~~~~~  345 (368)
T 3mmy_A          333 ASSYDWSKGHEFY  345 (368)
T ss_dssp             EECCCSTTCGGGC
T ss_pred             Eeccccccccccc
Confidence            9998865555543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=6.2e-30  Score=239.88  Aligned_cols=253  Identities=15%  Similarity=0.195  Sum_probs=201.1

Q ss_pred             CCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcccc--CCCcceEEeeecCCCceEEEEEcCCCC-EEE
Q 014154          102 EDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE--SSCSTVKSWNVCASGTIAFSKVDISEK-FSL  178 (430)
Q Consensus       102 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~--~~~~~i~~~~~~~~~~i~~~~~~~~~~-~l~  178 (430)
                      +.+.+..+.+.+...       ..+++++.+|.+.+|++........  .....+..+. .|...|.+++|+|++. +|+
T Consensus       127 h~~~v~~l~~~p~~~-------~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~  198 (430)
T 2xyi_A          127 HEGEVNRARYMPQNA-------CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLL  198 (430)
T ss_dssp             ESSCCSEEEEETTEE-------EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEE
T ss_pred             CCCcEEEEEECCCCC-------cEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEE
Confidence            345666677666433       4888999999999999875322110  1122344444 6788999999999988 999


Q ss_pred             EEeCCCeEEEEECCCCee-------eEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCC--
Q 014154          179 FGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQR--  248 (430)
Q Consensus       179 ~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~--  248 (430)
                      +|+.||.|++|++.++..       ...+..|         ...|.+++|  +| ++.+|++++.|+.|++||+++..  
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h---------~~~v~~v~~--~p~~~~~l~s~~~dg~i~i~d~~~~~~~  267 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGH---------TAVVEDVAW--HLLHESLFGSVADDQKLMIWDTRNNNTS  267 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCC---------SSCEEEEEE--CSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCC---------CCCEeeeEE--eCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence            999999999999987322       2333333         367999999  67 67899999999999999999863  


Q ss_pred             cceEEEeecCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCCeEEEEecCCCC-eEEEEeCCCcE
Q 014154          249 RPVMSFDFRETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLP-IIASCGLDSYL  325 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i  325 (430)
                      .++..+..|...|++++|+|++. +|++|+.||.|++||+++ .+++..+..| ...|.+++|+|++. +|++++.|+.|
T Consensus       268 ~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-~~~v~~i~~sp~~~~~l~s~~~d~~i  346 (430)
T 2xyi_A          268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH-KDEIFQVQWSPHNETILASSGTDRRL  346 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-SSCEEEEEECSSCTTEEEEEETTSCC
T ss_pred             cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-CCCEEEEEECCCCCCEEEEEeCCCcE
Confidence            46778889999999999999987 688999999999999998 5678888888 89999999999995 68999999999


Q ss_pred             EEEECCCC--------------ceeeEEEeeccccceEEeeecccccc-c-cccCCCCceEecCCCCC
Q 014154          326 RFWDIKTR--------------QLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       326 ~iwd~~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~~d~~i~~~~~~~~  377 (430)
                      +|||+...              +++..  +.+| ...|.+++|+|++. + ++++.|+.|++|+....
T Consensus       347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~h-~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          347 HVWDLSKIGEEQSTEDAEDGPPELLFI--HGGH-TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEEEGGGTTCCCCHHHHHHCCTTEEEE--CCCC-SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEEeCCCCccccCccccccCCcceEEE--cCCC-CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            99999872              34443  5566 55579999999998 5 88999999999998653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1e-29  Score=231.17  Aligned_cols=262  Identities=9%  Similarity=0.017  Sum_probs=194.0

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC---------C
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN---------G   85 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~---------~   85 (430)
                      ..+++|+.||.|++||+..+     +.+..+.  ...+.  ++.+  +|+   +++++.|++|++|+...         +
T Consensus        49 ~~l~sg~~Dg~v~iwd~~~~-----~~~~~~~--~~~v~--~~~~--~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~  114 (343)
T 3lrv_A           49 WVCMCRCEDGALHFTQLKDS-----KTITTIT--TPNPR--TGGE--HPA---IISRGPCNRLLLLYPGNQITILDSKTN  114 (343)
T ss_dssp             EEEEEEEETTEEEEEEESSS-----SCEEEEE--EECCC--TTCC--CCS---EEEECSTTEEEEEETTTEEEEEETTTC
T ss_pred             CEEEEECCCCcEEEEECCCC-----cEEEEEe--cCCce--eeee--CCc---eEEecCCCeEEEEEccCceEEeecCCc
Confidence            56899999999999999987     4554444  23333  3333  554   99999999999997753         2


Q ss_pred             cccceeeccCCCCCCCCCCceEEEEEee--cCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154           86 DLRVAISNAGDSGAQPEDDGIVGLHLFK--RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG  163 (430)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~  163 (430)
                      +.+..+.       .++.+.+.++.+.+  ..        ..+++++.+|.+.+|++....        .+.+....+..
T Consensus       115 ~~~~~~~-------~~~~~~v~~~~~~~~~~~--------~~l~s~s~dg~i~~wd~~~~~--------~~~~~~~~~~~  171 (343)
T 3lrv_A          115 KVLREIE-------VDSANEIIYMYGHNEVNT--------EYFIWADNRGTIGFQSYEDDS--------QYIVHSAKSDV  171 (343)
T ss_dssp             CEEEEEE-------CCCSSCEEEEECCC---C--------CEEEEEETTCCEEEEESSSSC--------EEEEECCCSSC
T ss_pred             ceeEEee-------cCCCCCEEEEEcCCCCCC--------CEEEEEeCCCcEEEEECCCCc--------EEEEEecCCCC
Confidence            2222222       12345677777765  33        488999999999999986432        44555445666


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EeeCC-CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKP-PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      .+.+++|+|++.+|++|+.||.|++||+++++.. ..+.. |.         ..|.+++|  +|++.+|++++ ++.|++
T Consensus       172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~---------~~v~~l~f--s~~g~~l~s~~-~~~v~i  239 (343)
T 3lrv_A          172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE---------AKIKEVKF--ADNGYWMVVEC-DQTVVC  239 (343)
T ss_dssp             CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTT---------SCEEEEEE--CTTSSEEEEEE-SSBEEE
T ss_pred             ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCC---------CCEEEEEE--eCCCCEEEEEe-CCeEEE
Confidence            8999999999999999999999999999998876 56655 43         78999999  89999999999 559999


Q ss_pred             EECCCCCcceEEEe---ecCCCe--EEEEecCCCCEEEEEeC-CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecC---C
Q 014154          242 YDTSAQRRPVMSFD---FRETPI--KAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP---T  312 (430)
Q Consensus       242 wd~~~~~~~~~~~~---~~~~~i--~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~---~  312 (430)
                      ||++.... +..+.   .|...+  .+++|+|++++|++++. |+.|++|++.+.......     .++..+.|+|   +
T Consensus       240 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~  313 (343)
T 3lrv_A          240 FDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTAD  313 (343)
T ss_dssp             EETTSSTT-CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CC
T ss_pred             EEcCCCCc-ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccc
Confidence            99998653 33222   233344  36999999999999998 999999999765543332     3577888998   8


Q ss_pred             CCeEEEEeCCCcEEEEECC
Q 014154          313 LPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~  331 (430)
                      ...|++++.|+.++++-..
T Consensus       314 ~~~l~~~~~d~~~~~~~~~  332 (343)
T 3lrv_A          314 FTDMDVVCGDGGIAAILKT  332 (343)
T ss_dssp             CCEEEEEEETTEEEEEEEC
T ss_pred             cceeEEEecCCceEEEEec
Confidence            8899999999999987543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.8e-30  Score=240.43  Aligned_cols=228  Identities=11%  Similarity=0.071  Sum_probs=155.3

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEe--eecCCCceEEEEEcC--------CCCEEEEEeCCCeEEEEECCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW--NVCASGTIAFSKVDI--------SEKFSLFGGKGVEVNVWDLDK  193 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~--~~~~~~~i~~~~~~~--------~~~~l~~~~~d~~i~~~d~~~  193 (430)
                      ..+++++.|+++++|++......      .....  ...|...|.+++|+|        ++++|++++.|++|+|||+.+
T Consensus       102 ~~las~~~d~~v~lw~~~~~~~~------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~  175 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNETII------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTD  175 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTEEE------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEET
T ss_pred             CEEEEEeCCCcEEEEECCCCccc------eeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCC
Confidence            35666777777777776533210      00111  124778899999987        788999999999999999988


Q ss_pred             CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcce---------------------
Q 014154          194 CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPV---------------------  251 (430)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~---------------------  251 (430)
                      +..+..+..+.         ..+.+++|  +|++ .+|++++.|++|++||+++++...                     
T Consensus       176 ~~~~~~~~~~~---------~~v~~v~~--~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          176 EGPILAGYPLS---------SPGISVQF--RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             TEEEEEEEECS---------SCEEEEEE--ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             CceeeeecCCC---------CCcEEEEE--CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            87776665554         67999999  6776 589999999999999998754311                     


Q ss_pred             ---EEEeecCCCeEEEEec-CCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEE------------------e
Q 014154          252 ---MSFDFRETPIKAVAEE-PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA------------------R  309 (430)
Q Consensus       252 ---~~~~~~~~~i~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~------------------~  309 (430)
                         ....+|...+.++.|+ |+++.|++++.|+.+++||+..++....+..| ...+..+.                  |
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDS-TMKLGPKNLLPNVQGISLFPSLLGACP  323 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEE
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeee-cCccccEEEccccccccccCcceeEEE
Confidence               1123566788899986 89999999999999999999988776666554 33333333                  3


Q ss_pred             cC--CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154          310 HP--TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       310 ~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                      +|  ++.++++|+.||.|++||+.+++.+..  +.+| ...|.+++|+|||++ ++++++| +.+|.
T Consensus       324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~--~~~~-~~~V~svafspdG~~LA~as~~G-v~lvr  386 (393)
T 4gq1_A          324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSI--PIQL-GMPIVDFCWHQDGSHLAIATEGS-VLLTR  386 (393)
T ss_dssp             CSSCTTEEEEEETTTTEEEEEETTCTTCCEE--EEEC-SSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred             ccCCCCEEEEEECCCCEEEEEECCCCcEEEE--ecCC-CCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence            33  334677888999999999999988876  4455 456899999999999 6565554 55554

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1e-29  Score=236.38  Aligned_cols=235  Identities=12%  Similarity=0.075  Sum_probs=189.6

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------ee
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKC-------EK  196 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~-------~~  196 (430)
                      .+++++.+|.+.||++.....    ....+..+. .|...|.+++|+| ++++|++|+.||.|++||+.++       +.
T Consensus        49 ~~~~~~~~g~i~v~~~~~~~~----~~~~~~~~~-~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~  123 (402)
T 2aq5_A           49 LICEASGGGAFLVLPLGKTGR----VDKNVPLVC-GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP  123 (402)
T ss_dssp             EEBCCSSSCCEEEEETTCCEE----CCTTCCCBC-CCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSC
T ss_pred             EEEEEcCCCEEEEEECccCCC----CCCCCceEe-cCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCc
Confidence            334568889999999743211    011222232 5788999999999 9999999999999999999887       44


Q ss_pred             eEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcceEEE--eecCCCeEEEEecCCCCEE
Q 014154          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSF--DFRETPIKAVAEEPDSFNI  273 (430)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~~i~~~~~sp~~~~l  273 (430)
                      +..+..|.         ..|.+++|  +|++ .+|++++.|+.|++||+.+++ .+..+  ..|...|.+++|+|++++|
T Consensus       124 ~~~~~~h~---------~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          124 VITLEGHT---------KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALI  191 (402)
T ss_dssp             SEEEECCS---------SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred             eEEecCCC---------CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCCEE
Confidence            55555544         77999999  7887 699999999999999999865 47777  7799999999999999999


Q ss_pred             EEEeCCCcEEEEEccCCeEEeee-eCCCCCCeEEEEecCCCCeEEEE---eCCCcEEEEECCCCce-eeEEEeeccccce
Q 014154          274 YIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPIIASC---GLDSYLRFWDIKTRQL-LSAVFLKQHLNEV  348 (430)
Q Consensus       274 ~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~s~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~  348 (430)
                      ++++.|+.|++||+++++.+..+ ..|....+.++.|+|++.+|++|   +.|+.|++||+++++. +... ...+ ...
T Consensus       192 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~-~~~  269 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDT-SSG  269 (402)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-ECCC-CSS
T ss_pred             EEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-eccC-CCc
Confidence            99999999999999999999988 67733348999999999999999   7999999999998765 3332 2223 344


Q ss_pred             EEeeeccccccc-c-ccCCCCceEecCCCCCc
Q 014154          349 VFDSAFADKEVA-N-AAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       349 v~~~~~s~~g~~-~-~~~~d~~i~~~~~~~~~  378 (430)
                      +.+++|+|++.+ + +++.|+.|++|+.....
T Consensus       270 v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          270 VLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             CEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             eeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            789999999988 3 56689999999987643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.2e-27  Score=221.62  Aligned_cols=266  Identities=12%  Similarity=0.073  Sum_probs=210.9

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      .++++++.|+.|++||+.+++.+..+..+         ..+.++.+.+...       ..+++++.++.+.+|++.... 
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~-------~l~~~~~~d~~i~v~d~~~~~-   65 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVG---------SNPMGAVISPDGT-------KVYVANAHSNDVSIIDTATNN-   65 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS---------SSEEEEEECTTSS-------EEEEEEGGGTEEEEEETTTTE-
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecC---------CCcceEEECCCCC-------EEEEECCCCCeEEEEECCCCe-
Confidence            36788999999999999999888777653         3456666655433       234677799999999975322 


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  224 (430)
                             .+..+.  ....+.+++|+|++++|++++ .++.|++||+.+++.+..+..+          ..+.+++|  +
T Consensus        66 -------~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----------~~~~~~~~--s  124 (391)
T 1l0q_A           66 -------VIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----------KSPLGLAL--S  124 (391)
T ss_dssp             -------EEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------SSEEEEEE--C
T ss_pred             -------EEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----------CCcceEEE--C
Confidence                   333333  345899999999999886554 6799999999999887776543          45789999  8


Q ss_pred             CCCCEE-EEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEE-EEEeCCCcEEEEEccCCeEEeeeeCCCCC
Q 014154          225 DDHRKF-VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSGDLASVDIRTGKLLGCFIGKCSG  302 (430)
Q Consensus       225 ~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  302 (430)
                      |+++.| ++++.++.|++||+.+++ .+..+..+ ..+.+++|+|++++| ++++.++.|++||+++++.+..+..  ..
T Consensus       125 ~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~  200 (391)
T 1l0q_A          125 PDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EA  200 (391)
T ss_dssp             TTSSEEEEEETTTTEEEEEETTTTE-EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SS
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCc-EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CC
Confidence            999877 678889999999999865 46666655 567999999999888 5677889999999999998877765  46


Q ss_pred             CeEEEEecCCCCeEEEEe---CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154          303 SIRSIARHPTLPIIASCG---LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       303 ~v~~i~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~  377 (430)
                      .+.+++|+|++++|++++   .++.|++||+.+++.+..+  ..+ . .+.+++|+|+|++  ++++.|+.|++|+....
T Consensus       201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~-~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--PVG-P-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE--ECC-S-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE--ecC-C-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            789999999999998888   6899999999999888774  334 2 2588999999986  56688999999998753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.1e-28  Score=228.96  Aligned_cols=243  Identities=8%  Similarity=0.058  Sum_probs=187.0

Q ss_pred             eeeeeecCCCCCcee-EEeecCCeEEEecCC--CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc
Q 014154           54 VLAASIDDSQNDPLL-AVARKNGLTDILNPL--NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT  130 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  130 (430)
                      +.++.|  +|+|++| ++|+.||.|+|||+.  +++.+..+..+      .+...+.++.+.+..        ..+++++
T Consensus       105 v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~------~~~~~v~~~~~sp~~--------~~l~~~~  168 (450)
T 2vdu_B          105 IRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF------CFSKRPNAISIAEDD--------TTVIIAD  168 (450)
T ss_dssp             EEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE------ECSSCEEEEEECTTS--------SEEEEEE
T ss_pred             eEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc------cCCCCceEEEEcCCC--------CEEEEEe
Confidence            556666  8889986 889999999999998  78877776532      123467777776544        4889999


Q ss_pred             cCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC---CCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCC
Q 014154          131 TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS---EKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKN  206 (430)
Q Consensus       131 ~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~  206 (430)
                      .+|.+.+|++.......    ..+..+. .|...|.+++|+|+   +++|++++.|+.|++||+.++..+.. +..|.  
T Consensus       169 ~~g~v~~~~~~~~~~~~----~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~--  241 (450)
T 2vdu_B          169 KFGDVYSIDINSIPEEK----FTQEPIL-GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK--  241 (450)
T ss_dssp             TTSEEEEEETTSCCCSS----CCCCCSE-ECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS--
T ss_pred             CCCcEEEEecCCccccc----ccceeee-cccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC--
Confidence            99999999875332100    0111222 46789999999999   99999999999999999998887766 33443  


Q ss_pred             CCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee-------------------------cCCCe
Q 014154          207 SLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF-------------------------RETPI  261 (430)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~~~~i  261 (430)
                             ..|.+++|  + ++.+|++++.|+.|++||+.+++. +..+..                         ....|
T Consensus       242 -------~~v~~~~~--s-d~~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  310 (450)
T 2vdu_B          242 -------HFVSSICC--G-KDYLLLSAGGDDKIFAWDWKTGKN-LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAV  310 (450)
T ss_dssp             -------SCEEEEEE--C-STTEEEEEESSSEEEEEETTTCCE-EEEEECHHHHGGGCCTTSBC----------CBCCCE
T ss_pred             -------CceEEEEE--C-CCCEEEEEeCCCeEEEEECCCCcE-eeeecchhhhhhhhhhcccccccccccccccceEEE
Confidence                   77999999  7 999999999999999999998663 555552                         23578


Q ss_pred             EEEEecCCCCEEEEEe-CCCcEEEEEc--cCC---eEEeeeeCCCCCCeEEEEecCCCCeEEEEeC------CCcEEEEE
Q 014154          262 KAVAEEPDSFNIYIGN-GSGDLASVDI--RTG---KLLGCFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWD  329 (430)
Q Consensus       262 ~~~~~sp~~~~l~~~~-~d~~i~iwd~--~~~---~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~------dg~i~iwd  329 (430)
                      .+++|+|++++|++++ .++.|++||+  .++   +.+..+..+  ..|.+++|+|++.++++++.      +..|.+|.
T Consensus       311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~--~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~  388 (450)
T 2vdu_B          311 SKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP--YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE  388 (450)
T ss_dssp             EEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS--SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC--CceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence            9999999999999999 8999999999  665   677778875  68999999996544443333      45578887


Q ss_pred             CCC
Q 014154          330 IKT  332 (430)
Q Consensus       330 ~~~  332 (430)
                      +..
T Consensus       389 ~~~  391 (450)
T 2vdu_B          389 YNL  391 (450)
T ss_dssp             EET
T ss_pred             EEc
Confidence            653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=1.7e-29  Score=233.93  Aligned_cols=246  Identities=9%  Similarity=-0.043  Sum_probs=167.4

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeec----CCCCCceeEEeecCCeEEEecCCCCcccce
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID----DSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~   90 (430)
                      ..+++|+.|++|+|||+..+.......+..+.+|.+.|..++|++.    ...||++||+|+.|++|+|||+.++..+..
T Consensus       102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~  181 (393)
T 4gq1_A          102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA  181 (393)
T ss_dssp             EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence            4688999999999999998622222345568899999888888752    234788999999999999999865432211


Q ss_pred             eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (430)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~  170 (430)
                      +                                                                   ..+...+.+++|
T Consensus       182 ~-------------------------------------------------------------------~~~~~~v~~v~~  194 (393)
T 4gq1_A          182 G-------------------------------------------------------------------YPLSSPGISVQF  194 (393)
T ss_dssp             E-------------------------------------------------------------------EECSSCEEEEEE
T ss_pred             e-------------------------------------------------------------------cCCCCCcEEEEE
Confidence            1                                                                   123467788899


Q ss_pred             cCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCC----------------CCCcCCcceeEEEEeecCCCCEEEEE
Q 014154          171 DISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNS----------------LGIFTPTWFTSAAFLSIDDHRKFVAG  233 (430)
Q Consensus       171 ~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~~~v~~~~~~~~~~~~~l~s~  233 (430)
                      +|++ .+|++++.|++|++||+.+++.......+....                ....+...+.++.|. .+++..|+++
T Consensus       195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~  273 (393)
T 4gq1_A          195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAM  273 (393)
T ss_dssp             ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEE
T ss_pred             CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEE
Confidence            9876 478899999999999998776544332211100                011244678888885 6899999999


Q ss_pred             eCCCcEEEEECCCCCcceEEEeecCCCeEEEEe------------------cC--CCCEEEEEeCCCcEEEEEccCCeEE
Q 014154          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAE------------------EP--DSFNIYIGNGSGDLASVDIRTGKLL  293 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~------------------sp--~~~~l~~~~~d~~i~iwd~~~~~~~  293 (430)
                      +.|+.+++||+..+.. ...+..|...+..+.+                  +|  ++.++++|+.||.|++||+.+++++
T Consensus       274 s~d~~i~vwd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~  352 (393)
T 4gq1_A          274 CKSGAWLRWNLFANND-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN  352 (393)
T ss_dssp             CTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred             eCCCCEEEEECccCCC-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            9999999999987542 3444444433333333                  22  3446777889999999999999988


Q ss_pred             eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       294 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ..+.+| ..+|++++|+|+|++||+++.+| +.+|.+.
T Consensus       353 ~~~~~~-~~~V~svafspdG~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          353 SIPIQL-GMPIVDFCWHQDGSHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EEEEEC-SSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred             EEecCC-CCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence            888887 78999999999999999999776 6666653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-29  Score=252.17  Aligned_cols=236  Identities=15%  Similarity=0.121  Sum_probs=189.2

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++|+.||.|+||++..+   ..+.+..+.+|...|..++++.  .+++++|++|+.||.|++||+.+++...     
T Consensus        22 ~~latg~~dg~I~vwd~~~~---~~~~~~~l~~h~~~V~~l~~s~--~~~~~~l~s~s~Dg~I~vwd~~~~~~~~-----   91 (753)
T 3jro_A           22 KRLATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAH--PKFGTILASCSYDGKVLIWKEENGRWSQ-----   91 (753)
T ss_dssp             CCEEEEETTTEEEEEEEETT---EEEEEEEECCCSSCEEEEEECC--TTSCSEEEEEETTSCEEEEEEETTEEEE-----
T ss_pred             CeEEEEECCCcEEEEecCCC---CCccceeccCCcCceEEEEecC--CCCCCEEEEEeCCCeEEEEECCCCcccc-----
Confidence            46899999999999999842   1256778889999966666654  3348899999999999999976543100     


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC-
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS-  173 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~-  173 (430)
                                                                                 +..+ ..|...|.+++|+|+ 
T Consensus        92 -----------------------------------------------------------~~~~-~~h~~~V~~v~~sp~~  111 (753)
T 3jro_A           92 -----------------------------------------------------------IAVH-AVHSASVNSVQWAPHE  111 (753)
T ss_dssp             -----------------------------------------------------------EEEE-CCCSSCEEEEEECCGG
T ss_pred             -----------------------------------------------------------cccc-cCCCCCeEEEEECCCC
Confidence                                                                       0000 135678999999998 


Q ss_pred             -CCEEEEEeCCCeEEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecC-------------CCCEEEEEeCCC
Q 014154          174 -EKFSLFGGKGVEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSID-------------DHRKFVAGTNDH  237 (430)
Q Consensus       174 -~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~~~l~s~~~dg  237 (430)
                       ++++++|+.||.|++||+.++..  ...+..+         ...|.+++|  +|             ++.+|++|+.||
T Consensus       112 ~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~---------~~~v~~l~~--~p~~~~~~~~~~~~~d~~~l~sgs~dg  180 (753)
T 3jro_A          112 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH---------AIGVNSASW--APATIEEDGEHNGTKESRKFVTGGADN  180 (753)
T ss_dssp             GCSEEEEEETTSEEEEEECCSSSCCCCEEEECC---------SSCEEEEEE--CCCC---------CGGGCCEEEEETTS
T ss_pred             CCCEEEEEeCCCcEEEEEeecCCCcceeEeecC---------CCceEEEEe--cCcccccccccccCCCCCEEEEEECCC
Confidence             99999999999999999987632  2233333         367999999  66             588999999999


Q ss_pred             cEEEEECCCCC---cceEEEeecCCCeEEEEecCC---CCEEEEEeCCCcEEEEEccCCe-----EEeeeeCCCCCCeEE
Q 014154          238 QVRLYDTSAQR---RPVMSFDFRETPIKAVAEEPD---SFNIYIGNGSGDLASVDIRTGK-----LLGCFIGKCSGSIRS  306 (430)
Q Consensus       238 ~i~iwd~~~~~---~~~~~~~~~~~~i~~~~~sp~---~~~l~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~~~v~~  306 (430)
                      .|++||++++.   .+...+.+|...|++++|+|+   +.+|++++.||.|++||+++++     .+.....| ...|++
T Consensus       181 ~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~  259 (753)
T 3jro_A          181 LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWR  259 (753)
T ss_dssp             CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCC
T ss_pred             eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCC-CCceEE
Confidence            99999998754   345677889999999999999   8999999999999999999864     23333445 789999


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      ++|+|++.+|++++.||.|++|++.+
T Consensus       260 l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          260 ASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            99999999999999999999999874

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.1e-29  Score=231.90  Aligned_cols=253  Identities=11%  Similarity=0.034  Sum_probs=189.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      -.++|++.|++|+  |...        ...+.+|...+..++|    +|+|       .++.+.+|+.   +....+.. 
T Consensus        28 ~~iASas~D~TV~--d~~~--------~~~l~gh~~~v~~V~F----sPdg-------~~~~~~~~~~---~~~~~~~~-   82 (588)
T 2j04_A           28 TLYLTTFPDISIG--QPKY--------AKDINCNSKNLFHVKE----FPLE-------FENKLDFELA---QQNGLLNS-   82 (588)
T ss_dssp             CEEEECSSSEEEE--EECC--------CSCCSSBGGGTEEEEE----ECCC-------CCCTTTTSCC---CSSCSSTT-
T ss_pred             CEEEEEcCCceee--cccc--------cceecCCCccEEEEEE----CCCC-------CcceEEEEeC---CCceEeec-
Confidence            4688999999999  6443        3344688888766666    4555       4555555553   32222211 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC----CCceEEEEE
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA----SGTIAFSKV  170 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~----~~~i~~~~~  170 (430)
                            .+.+.+.++.|.+..        ..+++++.+|.+.+|+..          +.+.... .+    ...+.+++|
T Consensus        83 ------~~~~~V~~vawSPdG--------~~LAs~s~dg~V~iwd~~----------~~l~~l~-~~~~~~~~sv~svaf  137 (588)
T 2j04_A           83 ------QPVCYPRVCKPSPID--------DWMAVLSNNGNVSVFKDN----------KMLTNLD-SKGNLSSRTYHCFEW  137 (588)
T ss_dssp             ------SCSCCEEEEEECSSS--------SCEEEEETTSCEEEEETT----------EEEEECC-CSSCSTTTCEEEEEE
T ss_pred             ------CCCCcEEEEEECCCC--------CEEEEEeCCCcEEEEeCC----------ceeeecc-CCCccccccEEEEEE
Confidence                  124678877777654        489999999999999842          1333333 22    125999999


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCCee-------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          171 DISEKFSLFGGKGVEVNVWDLDKCEK-------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       171 ~~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      +|+|++|++|+.||+|++||+.++..       +..+..+..     .|..+|.+++|  +|++  +++++.|+.|++||
T Consensus       138 SPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~-----gh~~~V~sVaw--SPdg--Laass~D~tVrlWd  208 (588)
T 2j04_A          138 NPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDA-----GSKDWVTHIVW--YEDV--LVAALSNNSVFSMT  208 (588)
T ss_dssp             CSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCT-----TCCCCEEEEEE--ETTE--EEEEETTCCEEEEC
T ss_pred             cCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccc-----cccccEEEEEE--cCCc--EEEEeCCCeEEEEE
Confidence            99999999999999999999988742       455432221     13378999999  7888  88889999999999


Q ss_pred             CCCCCc--ceEEE-eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe--cCCCCeEEE
Q 014154          244 TSAQRR--PVMSF-DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR--HPTLPIIAS  318 (430)
Q Consensus       244 ~~~~~~--~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~--~~~~~~l~s  318 (430)
                      +.....  ....+ .+|...|.+++|+  ++.|++++ ++.|++||+.+++......+| ...|..+.|  +|++..|++
T Consensus       209 ~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh-~~~V~~va~~~s~d~~~La~  284 (588)
T 2j04_A          209 VSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS-LENFHIIPLNHEKESTILLM  284 (588)
T ss_dssp             CCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC-CSCCCEEEETTCSSCEEEEE
T ss_pred             CCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC-CceEEEEEeeeCCCCCEEEE
Confidence            987552  23556 4788899999999  68888887 699999999988874444476 899999999  999999999


Q ss_pred             EeCCCcEEEEECC
Q 014154          319 CGLDSYLRFWDIK  331 (430)
Q Consensus       319 ~~~dg~i~iwd~~  331 (430)
                      ++.||+ ++|...
T Consensus       285 a~edG~-klw~~d  296 (588)
T 2j04_A          285 SNKTSY-KVLLED  296 (588)
T ss_dssp             CSSCEE-EEEESS
T ss_pred             EcCCCC-EEEeec
Confidence            999999 999874

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=2.4e-27  Score=216.38  Aligned_cols=262  Identities=8%  Similarity=-0.034  Sum_probs=185.9

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceeecc
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .+++|+.+ .++||++..+     +.......  ..+.++++.+    +++++ ++|+.|++|+|||+.+++.+..+.. 
T Consensus        33 ~la~g~~~-~~~iw~~~~~-----~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-   99 (355)
T 3vu4_A           33 CLILSTLK-SFEIYNVHPV-----AHIMSQEM--RHLSKVRMLH----RTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-   99 (355)
T ss_dssp             EEEEECSS-EEEEEEETTE-----EEEEEEEC--SCCCEEEECT----TSSEEEEECSSTTEEEEEETTTTEEEEEEEC-
T ss_pred             EEEEEcCC-EEEEEecCCc-----ceeeeeec--CCeEEEEEcC----CCCEEEEEECCccEEEEEECCCCcEEEEEEC-
Confidence            45555555 5899998875     33333222  2355666654    34455 5688889999999999988877653 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                              ...+.++.+.+          ..++. ..++.+.+|++...+.       .+..+..    ....+++++  
T Consensus       100 --------~~~v~~v~~~~----------~~~~~-~~~~~i~i~d~~~~~~-------~~~~~~~----~~~~~~~s~--  147 (355)
T 3vu4_A          100 --------DAPVKDLFLSR----------EFIVV-SYGDVISVFKFGNPWK-------RITDDIR----FGGVCEFSN--  147 (355)
T ss_dssp             --------SSCEEEEEECS----------SEEEE-EETTEEEEEESSTTCC-------BSSCCEE----EEEEEEEET--
T ss_pred             --------CCceEEEEEcC----------CEEEE-EEcCEEEEEECCCCce-------eeEEecc----CCceEEEEc--
Confidence                    13666666532          23333 3578899999764411       2222221    334456666  


Q ss_pred             CEEEE--EeCCCeEEEEECCCCe----------------eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154          175 KFSLF--GGKGVEVNVWDLDKCE----------------KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (430)
Q Consensus       175 ~~l~~--~~~d~~i~~~d~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  236 (430)
                      .++++  |+.+|.|++||+.++.                .+..+..|.         ..|.+++|  +|++.+|++|+.|
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---------~~v~~~~~--s~~g~~l~s~s~d  216 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---------NPIKMVRL--NRKSDMVATCSQD  216 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS---------SCEEEEEE--CTTSSEEEEEETT
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---------CceEEEEE--CCCCCEEEEEeCC
Confidence            66666  5889999999998765                144555554         78999999  8999999999999


Q ss_pred             Cc-EEEEECCCCCcceEEEe-e-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE--ee----------------
Q 014154          237 HQ-VRLYDTSAQRRPVMSFD-F-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GC----------------  295 (430)
Q Consensus       237 g~-i~iwd~~~~~~~~~~~~-~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--~~----------------  295 (430)
                      ++ |++||+++++. +..+. + |...|.+++|+|++++|++++.|+.|++||++.+...  ..                
T Consensus       217 ~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (355)
T 3vu4_A          217 GTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSL  295 (355)
T ss_dssp             CSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCS
T ss_pred             CCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccce
Confidence            98 99999998664 77777 5 8999999999999999999999999999999765311  11                


Q ss_pred             ----eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154          296 ----FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       296 ----~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~  334 (430)
                          +..........++|++++.+|++++.||.+++|++..+.
T Consensus       296 ~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          296 CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence                111112234678999999999999999999999986543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.2e-26  Score=217.72  Aligned_cols=268  Identities=12%  Similarity=0.081  Sum_probs=207.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeee-----ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVE-----RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~   89 (430)
                      ..+++++.++.|++||+.++     +...     .+.+|...+..  +.+  +|++.++++++.|+.|++||+.+++.+.
T Consensus       135 ~~~~~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~v~~--~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~  205 (433)
T 3bws_A          135 RLAIPLLEDEGMDVLDINSG-----QTVRLSPPEKYKKKLGFVET--ISI--PEHNELWVSQMQANAVHVFDLKTLAYKA  205 (433)
T ss_dssp             EEEEEBTTSSSEEEEETTTC-----CEEEECCCHHHHTTCCEEEE--EEE--GGGTEEEEEEGGGTEEEEEETTTCCEEE
T ss_pred             eEEEEeCCCCeEEEEECCCC-----eEeeecCcccccccCCceeE--EEE--cCCCEEEEEECCCCEEEEEECCCceEEE
Confidence            34667778899999999986     4444     34567666444  444  6678899999999999999999888777


Q ss_pred             eeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154           90 AISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (430)
Q Consensus        90 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~  169 (430)
                      .+..+        ...+.++.+.+...       ..++++..++.+.+|++....        .+  ........+.+++
T Consensus       206 ~~~~~--------~~~~~~~~~~~~~~-------~l~~~~~~~~~i~~~d~~~~~--------~~--~~~~~~~~~~~~~  260 (433)
T 3bws_A          206 TVDLT--------GKWSKILLYDPIRD-------LVYCSNWISEDISVIDRKTKL--------EI--RKTDKIGLPRGLL  260 (433)
T ss_dssp             EEECS--------SSSEEEEEEETTTT-------EEEEEETTTTEEEEEETTTTE--------EE--EECCCCSEEEEEE
T ss_pred             EEcCC--------CCCeeEEEEcCCCC-------EEEEEecCCCcEEEEECCCCc--------EE--EEecCCCCceEEE
Confidence            76542        23666666655433       233566689999999975321        22  2334456799999


Q ss_pred             EcCCCCEEEEEe--------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEE
Q 014154          170 VDISEKFSLFGG--------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVR  240 (430)
Q Consensus       170 ~~~~~~~l~~~~--------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~  240 (430)
                      |+|++++|++++        .|+.|++||+.+++.+..+..          ...+.+++|  +|+++ ++++++.++.|+
T Consensus       261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~----------~~~~~~~~~--~~~g~~l~~~~~~~~~v~  328 (433)
T 3bws_A          261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP----------PGNKRHIVS--GNTENKIYVSDMCCSKIE  328 (433)
T ss_dssp             ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE----------EECEEEEEE--CSSTTEEEEEETTTTEEE
T ss_pred             EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC----------CCCcceEEE--CCCCCEEEEEecCCCEEE
Confidence            999999999888        488999999998877665422          145788999  88886 456668999999


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC---------------CCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---------------SGDLASVDIRTGKLLGCFIGKCSGSIR  305 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---------------d~~i~iwd~~~~~~~~~~~~~~~~~v~  305 (430)
                      +||+.+++ .+..+. +...+.+++|+|++++|++++.               ||.|++||+.+++.+..+..+  ..+.
T Consensus       329 v~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--~~~~  404 (433)
T 3bws_A          329 VYDLKEKK-VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--NQPT  404 (433)
T ss_dssp             EEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--SSEE
T ss_pred             EEECCCCc-EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--CCCc
Confidence            99999754 355554 6678999999999999998876               579999999999999888874  5789


Q ss_pred             EEEecCCCCeEEEEeC-CCcEEEEECCC
Q 014154          306 SIARHPTLPIIASCGL-DSYLRFWDIKT  332 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~-dg~i~iwd~~~  332 (430)
                      +++|+|++++|++++. |+.|++|++..
T Consensus       405 ~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          405 GLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             eEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            9999999999988875 99999999863

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.5e-25  Score=214.98  Aligned_cols=313  Identities=12%  Similarity=0.127  Sum_probs=226.8

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecC--CCCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP--LNGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~--~~~~~~~~~~   92 (430)
                      ..++++..|++|.+||..++     +++.++..+.. +  ..+.+  +|+|++|++++.|+.|.+||+  .+++.+..+.
T Consensus       150 ~~~vs~~~d~~V~v~D~~t~-----~~~~~i~~g~~-~--~~v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          150 LFSVTLRDAGQIALVDGDSK-----KIVKVIDTGYA-V--HISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTC-----CEEEEEECSTT-E--EEEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             EEEEEEcCCCeEEEEECCCc-----eEEEEEecCcc-c--ceEEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            45678888999999999987     67777763322 3  34445  789999999999999999999  7777776665


Q ss_pred             ccCCCCCCCCCCceEEEEEee----cCcccccccCceEEEEc-cCCeeEEEEeeecCccccCCCcceEEeeec-------
Q 014154           93 NAGDSGAQPEDDGIVGLHLFK----RQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC-------  160 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~-------  160 (430)
                      .         ......+.+.+    ..        ..++++. .++++.||+.....        .++.+...       
T Consensus       220 ~---------g~~p~~va~sp~~~~dg--------~~l~v~~~~~~~v~v~D~~t~~--------~~~~i~~~g~~~~~~  274 (543)
T 1nir_A          220 I---------GIEARSVESSKFKGYED--------RYTIAGAYWPPQFAIMDGETLE--------PKQIVSTRGMTVDTQ  274 (543)
T ss_dssp             C---------CSEEEEEEECCSTTCTT--------TEEEEEEEESSEEEEEETTTCC--------EEEEEECCEECSSSC
T ss_pred             c---------CCCcceEEeCCCcCCCC--------CEEEEEEccCCeEEEEeccccc--------cceeecccCcccCcc
Confidence            3         13455566654    32        3555555 58999999864322        34444321       


Q ss_pred             ---CCCceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeE--eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154          161 ---ASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (430)
Q Consensus       161 ---~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  234 (430)
                         ....+..+.++|++.. +++...++.|.+||+.+.+.+.  .+..          ...+..+.|  +|++++|++++
T Consensus       275 ~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~----------~~~~~~~~~--spdg~~l~va~  342 (543)
T 1nir_A          275 TYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA----------APFLHDGGW--DSSHRYFMTAA  342 (543)
T ss_dssp             CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC----------CSSCCCEEE--CTTSCEEEEEE
T ss_pred             ccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc----------CcCccCceE--CCCCCEEEEEe
Confidence               1236889999997655 5566778999999998765433  2221          145778899  89999776655


Q ss_pred             -CCCcEEEEECCCCCcceEEEee----cCCCeEEEEecCC-CCEEEEEe-CCCcEEEEEccC-------CeEEeeeeCCC
Q 014154          235 -NDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPD-SFNIYIGN-GSGDLASVDIRT-------GKLLGCFIGKC  300 (430)
Q Consensus       235 -~dg~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~sp~-~~~l~~~~-~d~~i~iwd~~~-------~~~~~~~~~~~  300 (430)
                       .+++|.+||+.+++ .+..+..    |.+....+ ++|+ +..++++. .|++|.+||+.+       .+++.++.+| 
T Consensus       343 ~~~~~v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~-  419 (543)
T 1nir_A          343 NNSNKVAVIDSKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-  419 (543)
T ss_dssp             GGGTEEEEEETTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-
T ss_pred             cCCCeEEEEECCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC-
Confidence             58899999999865 4666664    44333333 4777 55666665 579999999998       8999999998 


Q ss_pred             CCCeEEEEecCCCCeEEEEe-------CCCcEEEEECCCCcee-eEEEe------eccccceEEeeeccccccc-ccc--
Q 014154          301 SGSIRSIARHPTLPIIASCG-------LDSYLRFWDIKTRQLL-SAVFL------KQHLNEVVFDSAFADKEVA-NAA--  363 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~-~~~~~------~~~~~~~v~~~~~s~~g~~-~~~--  363 (430)
                      ...+..++|+|++++|++++       .+++|.|||+.+++.. ..+.+      ..+ ...+..++|+|+|+. .++  
T Consensus       420 g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~g~~~~~s~~  498 (543)
T 1nir_A          420 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG-AKRVVQPEYNKRGDEVWFSVW  498 (543)
T ss_dssp             CSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-CCEEEEEEECSSSSEEEEEEE
T ss_pred             CCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC-CCceEeccCCCCCCEEEEEee
Confidence            77889999999999999987       2779999999999887 33211      222 456799999999998 322  


Q ss_pred             ---CCCCceEecCCCCCc
Q 014154          364 ---ADAPMLEIQNGNDTQ  378 (430)
Q Consensus       364 ---~~d~~i~~~~~~~~~  378 (430)
                         +.++.|.|||.....
T Consensus       499 ~~~~~~~~i~v~D~~t~~  516 (543)
T 1nir_A          499 NGKNDSSALVVVDDKTLK  516 (543)
T ss_dssp             CCTTSCCEEEEEETTTTE
T ss_pred             cCCCCCCeEEEEECCCce
Confidence               257999999987754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=2.6e-24  Score=200.27  Aligned_cols=290  Identities=9%  Similarity=0.014  Sum_probs=207.1

Q ss_pred             eeeec----CCC----ceEEEEc--cCCCCCcceee--eecCCCCCCcceeeeeec----------CCCCCceeEEeecC
Q 014154           17 ALTFD----SLG----LIKVIEA--RGEHGGVPKVV--ERWGDPHSSNCVLAASID----------DSQNDPLLAVARKN   74 (430)
Q Consensus        17 l~t~~----~dg----~i~vw~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------~~p~g~~l~~g~~d   74 (430)
                      +++|+    .+|    .|+|||+  .++     +.+  ..+.+|...+..+++.+.          ..+.+..++.++.+
T Consensus        78 ~~~g~~~~~~~G~~~~~i~lwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~  152 (415)
T 2hqs_A           78 VVVGQVTPNPDGSYNVAYQLVDTGGAPG-----TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQT  152 (415)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEECSSSTT-----CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEEC
T ss_pred             EEEEEEEECCCCeEEEEEEEEeCCCCCC-----CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEec
Confidence            44665    567    9999999  776     444  457777776655544421          11224567666654


Q ss_pred             ------CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC---eeEEEEeeecCc
Q 014154           75 ------GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG---KASMRSIEVTKV  145 (430)
Q Consensus        75 ------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~~  145 (430)
                            +.|++||+. +.....+..+        ...+.++.|.+..        ..++.++.++   .+.+|++...  
T Consensus       153 ~~~~~~~~i~i~d~~-g~~~~~l~~~--------~~~v~~~~~Spdg--------~~la~~s~~~~~~~i~~~d~~tg--  213 (415)
T 2hqs_A          153 NGGQFPYELRVSDYD-GYNQFVVHRS--------PQPLMSPAWSPDG--------SKLAYVTFESGRSALVIQTLANG--  213 (415)
T ss_dssp             SSSSCCEEEEEEETT-SCSCEEEEEE--------SSCEEEEEECTTS--------SEEEEEECTTSSCEEEEEETTTC--
T ss_pred             CCCCccceEEEEcCC-CCCCEEEeCC--------CCcceeeEEcCCC--------CEEEEEEecCCCcEEEEEECCCC--
Confidence                  799999996 4445555443        2466666665543        3677777664   8889987532  


Q ss_pred             cccCCCcceEEeeecCCCceEEEEEcCCCCEEE-EEeCCCe--EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154          146 SAESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (430)
                             ..... ..+...+.+++|+|++++|+ +++.++.  |++||+.+++. ..+..+.         ..+.+++| 
T Consensus       214 -------~~~~l-~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~---------~~~~~~~~-  274 (415)
T 2hqs_A          214 -------AVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR---------SNNTEPTW-  274 (415)
T ss_dssp             -------CEEEE-ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS---------SCEEEEEE-
T ss_pred             -------cEEEe-ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC---------CcccceEE-
Confidence                   22222 24567899999999999888 5665554  99999988765 3444432         56889999 


Q ss_pred             ecCCCCEEEEEeC-CC--cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEeee
Q 014154          223 SIDDHRKFVAGTN-DH--QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLGCF  296 (430)
Q Consensus       223 ~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~~~  296 (430)
                       +|+++.|++++. ++  .|.+||+.++.  ...+..+...+.+++|+|+|++|++++.+   ..|++||+.+++.. .+
T Consensus       275 -spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l  350 (415)
T 2hqs_A          275 -FPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL  350 (415)
T ss_dssp             -CTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC
T ss_pred             -CCCCCEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee
Confidence             899999988886 45  67788988754  45556677789999999999999988764   58999999988874 45


Q ss_pred             eCCCCCCeEEEEecCCCCeEEEEeCCC---cEEEEECCCCceeeEEEeeccccceEEeeecccccc
Q 014154          297 IGKCSGSIRSIARHPTLPIIASCGLDS---YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV  359 (430)
Q Consensus       297 ~~~~~~~v~~i~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  359 (430)
                      ..+ . .+.+++|+|+|++|++++.++   .|++||+.. .....  +.++ ...|.+++|+|...
T Consensus       351 ~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g-~~~~~--l~~~-~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          351 SST-F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG-RFKAR--LPAT-DGQVKFPAWSPYLH  410 (415)
T ss_dssp             CCS-S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS-CCEEE--CCCS-SSEEEEEEECCCCC
T ss_pred             cCC-C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC-CcEEE--eeCC-CCCCcCCccccccc
Confidence            554 3 889999999999999988777   799999974 44444  5566 55679999999654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=3.4e-23  Score=198.61  Aligned_cols=290  Identities=12%  Similarity=0.047  Sum_probs=211.6

Q ss_pred             cceeeecCCCceEEEEc--cCCCCCcceeeeecCCCCCCcceeeeeecCCC----CCceeEEee-cCCeEEEecCCCCcc
Q 014154           15 LRALTFDSLGLIKVIEA--RGEHGGVPKVVERWGDPHSSNCVLAASIDDSQ----NDPLLAVAR-KNGLTDILNPLNGDL   87 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~g~~l~~g~-~dg~i~iwd~~~~~~   87 (430)
                      -.|++++.|+.|++||+  .++     +++.++..+. .  ...+.+  +|    +|++|++++ .+++|.|||..++++
T Consensus       191 ~~l~v~~~d~~V~v~D~~~~t~-----~~~~~i~~g~-~--p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          191 RYLLVIGRDARIDMIDLWAKEP-----TKVAEIKIGI-E--ARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             CEEEEEETTSEEEEEETTSSSC-----EEEEEEECCS-E--EEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             CEEEEECCCCeEEEEECcCCCC-----cEEEEEecCC-C--cceEEe--CCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence            46888899999999999  665     6666666332 2  345555  78    999999987 489999999999988


Q ss_pred             cceeeccCC----CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCC
Q 014154           88 RVAISNAGD----SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG  163 (430)
Q Consensus        88 ~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~  163 (430)
                      +..+.....    ..+. ....+..+.+.+...       ..+++...++.+.+|++....        .+.+..+.+..
T Consensus       261 ~~~i~~~g~~~~~~~~~-~~~~v~~i~~s~~~~-------~~~vs~~~~g~i~vvd~~~~~--------~l~~~~i~~~~  324 (543)
T 1nir_A          261 KQIVSTRGMTVDTQTYH-PEPRVAAIIASHEHP-------EFIVNVKETGKVLLVNYKDID--------NLTVTSIGAAP  324 (543)
T ss_dssp             EEEEECCEECSSSCCEE-SCCCEEEEEECSSSS-------EEEEEETTTTEEEEEECTTSS--------SCEEEEEECCS
T ss_pred             ceeecccCcccCccccc-cCCceEEEEECCCCC-------EEEEEECCCCeEEEEEecCCC--------cceeEEeccCc
Confidence            887764210    0001 112455555554333       466777788899999875322        33334445567


Q ss_pred             ceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEe-CCCcEE
Q 014154          164 TIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGT-NDHQVR  240 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~-~dg~i~  240 (430)
                      .+..+.|+|++++|++++ .+++|.+||+.+++.+..+....     ..|+....  .|. +|+ +..++++. .|++|.
T Consensus       325 ~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~-----~ph~g~g~--~~~-~p~~g~~~~s~~~~d~~V~  396 (543)
T 1nir_A          325 FLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK-----TPHPGRGA--NFV-HPKYGPVWSTSHLGDGSIS  396 (543)
T ss_dssp             SCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----SBCCTTCE--EEE-ETTTEEEEEEEBSSSSEEE
T ss_pred             CccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC-----CCCCCCCc--ccC-CCCCccEEEeccCCCceEE
Confidence            788999999999877655 58899999999999887765421     11222222  232 455 66677765 589999


Q ss_pred             EEECCCC------CcceEEEeecCCCeEEEEecCCCCEEEEEe-------CCCcEEEEEccCCeEE-eee--------eC
Q 014154          241 LYDTSAQ------RRPVMSFDFRETPIKAVAEEPDSFNIYIGN-------GSGDLASVDIRTGKLL-GCF--------IG  298 (430)
Q Consensus       241 iwd~~~~------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-------~d~~i~iwd~~~~~~~-~~~--------~~  298 (430)
                      +||+.+.      .+.+..+..|...+..++++|++++|++++       .+++|.+||+.+++.. ..+        ..
T Consensus       397 v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~  476 (543)
T 1nir_A          397 LIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE  476 (543)
T ss_dssp             EEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred             EEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence            9999871      235889999988889999999999999987       2679999999998876 333        23


Q ss_pred             CCCCCeEEEEecCCCCeEEEEe-----CCCcEEEEECCCCceeeEE
Q 014154          299 KCSGSIRSIARHPTLPIIASCG-----LDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       299 ~~~~~v~~i~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~  339 (430)
                      + ...+..+.|+|+|+.|+++.     .|+.|.|||.++++++.++
T Consensus       477 ~-~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i  521 (543)
T 1nir_A          477 G-AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVV  521 (543)
T ss_dssp             S-CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             C-CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEee
Confidence            3 67899999999999888763     4799999999999999884

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=6.6e-24  Score=197.54  Aligned_cols=222  Identities=9%  Similarity=0.010  Sum_probs=169.2

Q ss_pred             ceEEEEccC------CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCC---eEEEEECCCC
Q 014154          124 RTLLTCTTK------GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---EVNVWDLDKC  194 (430)
Q Consensus       124 ~~~~~~~~~------g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~  194 (430)
                      ..++.++.+      +.+.+|++...         .++.+. .+...+.+++|+|++++|++++.++   .|++||+.++
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~---------~~~~l~-~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg  213 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGY---------NQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG  213 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSC---------SCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCC---------CCEEEe-CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC
Confidence            355555543      67888886421         233332 4567899999999999999999875   9999999988


Q ss_pred             eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCCCc--EEEEECCCCCcceEEEeecCCCeEEEEecCCCC
Q 014154          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF  271 (430)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~  271 (430)
                      +... +..+.         ..+.+++|  +|+++.|+ +++.++.  |++||+.++.  ...+..|...+.+++|+|+|+
T Consensus       214 ~~~~-l~~~~---------~~~~~~~~--spdg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~  279 (415)
T 2hqs_A          214 AVRQ-VASFP---------RHNGAPAF--SPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQ  279 (415)
T ss_dssp             CEEE-EECCS---------SCEEEEEE--CTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSS
T ss_pred             cEEE-eecCC---------CcccCEEE--cCCCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCC
Confidence            7653 33332         56889999  89999887 6666655  9999998754  466777888999999999999


Q ss_pred             EEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC---CcEEEEECCCCceeeEEEeeccc
Q 014154          272 NIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD---SYLRFWDIKTRQLLSAVFLKQHL  345 (430)
Q Consensus       272 ~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~  345 (430)
                      +|++++.+ +  .|++||+.+++.. .+..+ ...+.+++|+|+|++|++++.+   ..|++||+.+++...   +..+ 
T Consensus       280 ~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~-~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~---l~~~-  353 (415)
T 2hqs_A          280 NLAFTSDQAGRPQVYKVNINGGAPQ-RITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV---LSST-  353 (415)
T ss_dssp             EEEEEECTTSSCEEEEEETTSSCCE-ECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE---CCCS-
T ss_pred             EEEEEECCCCCcEEEEEECCCCCEE-EEecC-CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE---ecCC-
Confidence            99988864 4  6888899887643 44444 6688999999999999888764   589999999887743   3334 


Q ss_pred             cceEEeeeccccccc-cccCCCC---ceEecCCCC
Q 014154          346 NEVVFDSAFADKEVA-NAAADAP---MLEIQNGND  376 (430)
Q Consensus       346 ~~~v~~~~~s~~g~~-~~~~~d~---~i~~~~~~~  376 (430)
                      . .+.+++|+|||++ ++++.++   .|.+|+...
T Consensus       354 ~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          354 F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence            2 5689999999997 6666666   788888764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=1.4e-23  Score=185.92  Aligned_cols=256  Identities=11%  Similarity=0.012  Sum_probs=182.8

Q ss_pred             eecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-CcccceeeccCCC
Q 014154           19 TFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-GDLRVAISNAGDS   97 (430)
Q Consensus        19 t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~   97 (430)
                      .++.++.|++||+.++     +.. .+..|...+  .++.+  +|+|++|++++ ++.|.+||+.+ ++.......    
T Consensus        17 ~~~~~~~i~~~d~~~~-----~~~-~~~~~~~~v--~~~~~--spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~----   81 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTR-----KMR-VVWQTPELF--EAPNW--SPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG----   81 (297)
T ss_dssp             -CCCCEEEEEEETTTT-----EEE-EEEEESSCC--EEEEE--CTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT----
T ss_pred             CCCcceeEEEEeCCCC-----cee-eeccCCcce--EeeEE--CCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc----
Confidence            4567899999999986     433 344466664  45555  78899999886 78999999876 542211100    


Q ss_pred             CCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEE
Q 014154           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFS  177 (430)
Q Consensus        98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l  177 (430)
                                                                                    .+...+.+++|+|++++|
T Consensus        82 --------------------------------------------------------------~~~~~~~~~~~spdg~~l   99 (297)
T 2ojh_A           82 --------------------------------------------------------------FATICNNDHGISPDGALY   99 (297)
T ss_dssp             --------------------------------------------------------------TCCCBCSCCEECTTSSEE
T ss_pred             --------------------------------------------------------------cccccccceEECCCCCEE
Confidence                                                                          112345678899999999


Q ss_pred             EEEeC--CC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCCCcEEEEECCCCCcceE
Q 014154          178 LFGGK--GV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       178 ~~~~~--d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~  252 (430)
                      ++++.  ++  .|..|++.++. ...+...          ..+..++|  +|+++.|+ ++..++.++||++........
T Consensus       100 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~----------~~~~~~~~--spdg~~l~~~~~~~~~~~l~~~~~~~~~~~  166 (297)
T 2ojh_A          100 AISDKVEFGKSAIYLLPSTGGT-PRLMTKN----------LPSYWHGW--SPDGKSFTYCGIRDQVFDIYSMDIDSGVET  166 (297)
T ss_dssp             EEEECTTTSSCEEEEEETTCCC-CEECCSS----------SSEEEEEE--CTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             EEEEeCCCCcceEEEEECCCCc-eEEeecC----------CCccceEE--CCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence            99883  33  45555555443 2222222          34778899  89999777 778899999998643223356


Q ss_pred             EEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEcc-CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC--------
Q 014154          253 SFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD--------  322 (430)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d--------  322 (430)
                      .+..+...+.+++|+|++++|++++ .++.+++|++. .+..+..+..+ ...+..+.|+|++++|++++.+        
T Consensus       167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~  245 (297)
T 2ojh_A          167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS-AYGDWFPHPSPSGDKVVFVSYDADVFDHPR  245 (297)
T ss_dssp             ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC-SEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred             EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC-CcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence            6677778899999999999888766 58999999986 45566677776 6789999999999999888766        


Q ss_pred             ---CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC
Q 014154          323 ---SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA  366 (430)
Q Consensus       323 ---g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d  366 (430)
                         +.|++||+.+++......+.+| ...+..++|+|+|+. ++++.+
T Consensus       246 ~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          246 DLDVRVQLMDMDGGNVETLFDLFGG-QGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             SEEEEEEEEETTSCSCEEEEEEEES-TTTSCSCCBCTTSSEEEEEEEC
T ss_pred             cCceEEEEEecCCCCceeeeccCCC-CcccccceECCCCCEEEEEEec
Confidence               5699999998876554434455 344689999999997 555443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=2.7e-22  Score=181.07  Aligned_cols=273  Identities=11%  Similarity=0.005  Sum_probs=191.3

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec-CCeEEEecCCCCcc-ccee
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDL-RVAI   91 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~-dg~i~iwd~~~~~~-~~~~   91 (430)
                      ...++++..++.|.+||+.++     +++..+..+...  . .+.+  +|+|++|++++. ++.|.+||+.+++. ...+
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~--~-~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~   79 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTL-----EILNQITLGYDF--V-DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI   79 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTC-----CEEEEEECCCCE--E-EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEE
T ss_pred             CEEEEEecCCCeEEEEeCccc-----ceeeeEEccCCc--c-eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEec
Confidence            345778889999999999987     555555544333  2 5555  788887766554 88999999876653 1110


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      .                                                                   .+.....+++|+
T Consensus        80 ~-------------------------------------------------------------------~~~~~~~~~~~s   92 (331)
T 3u4y_A           80 Q-------------------------------------------------------------------EGQSSMADVDIT   92 (331)
T ss_dssp             E-------------------------------------------------------------------ECSSCCCCEEEC
T ss_pred             c-------------------------------------------------------------------cCCCCccceEEC
Confidence            0                                                                   011223347899


Q ss_pred             CCCCEEEEEeCCC---eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCCCc-EEEEECCC
Q 014154          172 ISEKFSLFGGKGV---EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQ-VRLYDTSA  246 (430)
Q Consensus       172 ~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~-i~iwd~~~  246 (430)
                      |++++|+++..++   .|.+||+.+++.+..+...          ..+.+++|  +|++++|+ +...++. |.+|++..
T Consensus        93 ~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----------~~~~~~~~--spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           93 PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP----------YDAVGIAI--SPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC----------TTEEEEEE--CTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC----------CCccceEE--CCCCCEEEEEecCCCceEEEEEECC
Confidence            9999999555553   8999999998887766543          34688999  89998554 4456688 99999986


Q ss_pred             CCcce---EEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeE---EeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          247 QRRPV---MSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL---LGCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       247 ~~~~~---~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      .....   ............++|+|+++++++++ .++.|.+||+.+++.   +..+..  ...+..++|+|+|++|+.+
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~  238 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGSTVYVL  238 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSEEEEE
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCEEEEE
Confidence            44321   11112345689999999999766555 689999999999887   777775  4567899999999977665


Q ss_pred             e-CCCcEEEEECCCCce--eeEEEee----ccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154          320 G-LDSYLRFWDIKTRQL--LSAVFLK----QHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       320 ~-~dg~i~iwd~~~~~~--~~~~~~~----~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~  377 (430)
                      + .++.|.+||+.+++.  +..+...    .........++|+|||++  ++...++.|.+|+....
T Consensus       239 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          239 TESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             CSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             EcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            4 578899999999887  3332111    111111245899999987  55667789999998764

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.92  E-value=1.4e-22  Score=183.18  Aligned_cols=279  Identities=12%  Similarity=0.020  Sum_probs=193.7

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCCC--CcceeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceee
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHS--SNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      .+++++.++.|.+||+.++     +++..+.....  .+  ..+.+  +|+|+++ +++..++.|.+||+.+++.+..+.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~-----~~~~~~~~~~~~~~~--~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~   73 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKM-----AVDKVITIADAGPTP--MVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRID   73 (337)
T ss_dssp             EEEEEETTTEEEEEETTTT-----EEEEEEECTTCTTCC--CCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCCeEEEEECCCC-----cEEEEEEcCCCCCCc--cceEE--cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEE
Confidence            4788999999999999987     66665553221  22  33445  6788765 456668899999999888776654


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc------------cCCeeEEEEeeecCccccCCCcceEEeeec
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------------TKGKASMRSIEVTKVSAESSCSTVKSWNVC  160 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------------~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~  160 (430)
                      .....   .+...+..+.+.+..        ..++++.            .++.+.+|++....        .+..+.  
T Consensus        74 ~~~~~---~~~~~~~~~~~s~dg--------~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--------~~~~~~--  132 (337)
T 1pby_B           74 LSTPE---ERVKSLFGAALSPDG--------KTLAIYESPVRLELTHFEVQPTRVALYDAETLS--------RRKAFE--  132 (337)
T ss_dssp             CCBTT---EEEECTTCEEECTTS--------SEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--------EEEEEE--
T ss_pred             cCCcc---cccccccceEECCCC--------CEEEEEecccccccccccccCceEEEEECCCCc--------EEEEEe--
Confidence            31000   000012223433322        2555553            45788888864221        233333  


Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---
Q 014154          161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---  237 (430)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---  237 (430)
                      ....+.+++|+|++++|+++  ++.|++||+.+++....+.....          ...+.|  +|++..++..+..+   
T Consensus       133 ~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~----------~~~~~~--s~dg~~l~~~~~~~~~~  198 (337)
T 1pby_B          133 APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW----------EAETYA--QPDVLAVWNQHESSGVM  198 (337)
T ss_dssp             CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTT----------TTTTBC--CCBCCCCCCCCTTTTEE
T ss_pred             CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeecccc----------CCCcee--CCCccEEeeeccCCCce
Confidence            34567889999999988887  67899999999988776654321          011244  66666554433222   


Q ss_pred             ---------------------cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeee
Q 014154          238 ---------------------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCF  296 (430)
Q Consensus       238 ---------------------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  296 (430)
                                           .|.+||+.+++.....+..+...+.+++|+|++++|+++  ++.|.+||+.+++.+..+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~  276 (337)
T 1pby_B          199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRV  276 (337)
T ss_dssp             EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEE
T ss_pred             eeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCccee
Confidence                                 478999998764334455566678899999999999988  799999999999988887


Q ss_pred             eCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee
Q 014154          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK  342 (430)
Q Consensus       297 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  342 (430)
                      ..+  ..+.+++|+|++++|++++.++.|++||+.+++.+..+...
T Consensus       277 ~~~--~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          277 PLP--HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             ECS--SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             cCC--CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            753  46789999999999999999999999999999998886543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=1.4e-21  Score=176.99  Aligned_cols=297  Identities=9%  Similarity=0.039  Sum_probs=188.3

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC-CeEEEecCC--CCccc--cee
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN-GLTDILNPL--NGDLR--VAI   91 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d-g~i~iwd~~--~~~~~--~~~   91 (430)
                      +++++.++.|++|++...  +..+.+..+. +...+.  .+.+  +|+|++|++++.+ +.|.+|++.  +++..  ..+
T Consensus         8 ~~~~~~~~~v~~~~~~~~--~~~~~~~~~~-~~~~~~--~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~   80 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHE--GALTLTQVVD-VPGQVQ--PMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   80 (343)
T ss_dssp             EEEEGGGTEEEEEEECTT--SCEEEEEEEE-CSSCCC--CEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEeCCCCCeEEEEEECCC--CcEEEeeeEe-cCCCCc--eEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeecccc
Confidence            444578999999999642  1122333333 444433  3445  7788888888776 999999987  44422  222


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEE-EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL-TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~  170 (430)
                      ...         ..+..+.+.+..        ..++ ++..++.+.+|++. ...    ....+..  ......+.+++|
T Consensus        81 ~~~---------~~~~~~~~s~dg--------~~l~~~~~~~~~i~~~d~~-~~~----~~~~~~~--~~~~~~~~~~~~  136 (343)
T 1ri6_A           81 ALP---------GSLTHISTDHQG--------QFVFVGSYNAGNVSVTRLE-DGL----PVGVVDV--VEGLDGCHSANI  136 (343)
T ss_dssp             ECS---------SCCSEEEECTTS--------SEEEEEETTTTEEEEEEEE-TTE----EEEEEEE--ECCCTTBCCCEE
T ss_pred             ccC---------CCCcEEEEcCCC--------CEEEEEecCCCeEEEEECC-CCc----ccccccc--ccCCCCceEEEE
Confidence            211         133445554432        2454 44558899999984 110    0012222  233456889999


Q ss_pred             cCCCCEEEEEe-CCCeEEEEECCC-CeeeE----eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEE
Q 014154          171 DISEKFSLFGG-KGVEVNVWDLDK-CEKIW----TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYD  243 (430)
Q Consensus       171 ~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd  243 (430)
                      +|++++|++++ .++.|++||+.+ ++...    ......        ...+..++|  +|++++|++++ .++.|.+|+
T Consensus       137 s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~--~pdg~~l~~~~~~~~~i~~~~  206 (343)
T 1ri6_A          137 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--------GAGPRHMVF--HPNEQYAYCVNELNSSVDVWE  206 (343)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST--------TCCEEEEEE--CTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC--------CCCcceEEE--CCCCCEEEEEeCCCCEEEEEE
Confidence            99999888887 889999999987 54322    111111        135778999  89999776555 789999999


Q ss_pred             CCC--CCc-ceEEEee---c---CCCeEEEEecCCCCEEEEEe-CCCcEEEEEcc----CCeEEeeeeCCCCCCeEEEEe
Q 014154          244 TSA--QRR-PVMSFDF---R---ETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR----TGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       244 ~~~--~~~-~~~~~~~---~---~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~----~~~~~~~~~~~~~~~v~~i~~  309 (430)
                      +..  +.. ....+..   .   ...+.+++|+|++++|+++. .++.|.+||+.    +.+.+..+..+ . .+..++|
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~~  284 (343)
T 1ri6_A          207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE-T-QPRGFNV  284 (343)
T ss_dssp             SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS-S-SCCCEEE
T ss_pred             ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC-C-ccceEEE
Confidence            964  221 1222221   1   23566899999998887554 78999999998    23455556554 3 3889999


Q ss_pred             cCCCCeEEEEe-CCCcEEEEE--CCCCceeeEEEeeccccceEEeeeccccc
Q 014154          310 HPTLPIIASCG-LDSYLRFWD--IKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       310 ~~~~~~l~s~~-~dg~i~iwd--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      +|++++|++++ .++.|.+|+  ..+++......+..  .....+++|.++.
T Consensus       285 s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~--g~~p~~i~~~~~~  334 (343)
T 1ri6_A          285 DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV--GQGPMWVVVNAHE  334 (343)
T ss_dssp             CTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC--SSSCCEEEEEEEC
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc--CCCCeeEEEEccc
Confidence            99999888887 689999994  44664433222222  1223567777654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.91  E-value=2e-21  Score=176.89  Aligned_cols=260  Identities=13%  Similarity=0.085  Sum_probs=192.5

Q ss_pred             eeeecCCCCCceeEEeec-------CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEE
Q 014154           56 AASIDDSQNDPLLAVARK-------NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (430)
Q Consensus        56 ~~~~~~~p~g~~l~~g~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  128 (430)
                      .+.+  +|+|++|++++.       ++.|.+||..+++.+..+...         .....+.+.+...       ..+++
T Consensus        45 ~~~~--s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---------~~~~~~~~s~dg~-------~l~v~  106 (353)
T 3vgz_A           45 EMAY--SQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND---------LKPFGATINNTTQ-------TLWFG  106 (353)
T ss_dssp             EEEE--ETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES---------SCCCSEEEETTTT-------EEEEE
T ss_pred             ceEE--CCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC---------CCcceEEECCCCC-------EEEEE
Confidence            4445  678888888763       578999999999877776541         1222344443322       24555


Q ss_pred             EccCCeeEEEEeeecCccccCCCcceEEeeecCCC--------ceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeE
Q 014154          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASG--------TIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIW  198 (430)
Q Consensus       129 ~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~--------~i~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~  198 (430)
                      ...++.+.+|++....        .+..+......        .+.+++|+|+++++++++  .++.|.+||+.+++...
T Consensus       107 ~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~  178 (353)
T 3vgz_A          107 NTVNSAVTAIDAKTGE--------VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT  178 (353)
T ss_dssp             ETTTTEEEEEETTTCC--------EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE
T ss_pred             ecCCCEEEEEeCCCCe--------eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE
Confidence            6667889998865322        33444432222        268899999999888776  47889999999999888


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee----cCCCeEEEEecCCCCEEE
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF----RETPIKAVAEEPDSFNIY  274 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~i~~~~~sp~~~~l~  274 (430)
                      .+....         ..+.+++|  +|++++|++++.++.|.+||+.+++. +..+..    +...+.+++|+|++++++
T Consensus       179 ~~~~~~---------~~~~~~~~--s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~  246 (353)
T 3vgz_A          179 AIQNTG---------KMSTGLAL--DSEGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAF  246 (353)
T ss_dssp             EECCCC---------TTCCCCEE--ETTTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEE
T ss_pred             EecCCC---------CccceEEE--CCCCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEE
Confidence            776332         34677889  89999999999999999999998653 555543    445688899999999887


Q ss_pred             EEeCC-CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEee
Q 014154          275 IGNGS-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS  352 (430)
Q Consensus       275 ~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  352 (430)
                      +++.+ +.|.+||+.+++.+..+... .  ...++|+|++++++.++ .++.|.+||+.+++.+..+..  .  ....++
T Consensus       247 ~~~~~~~~v~~~d~~~~~~~~~~~~~-~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~--~~~~~~  319 (353)
T 3vgz_A          247 ITDSKAAEVLVVDTRNGNILAKVAAP-E--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT--P--THPNSL  319 (353)
T ss_dssp             EEESSSSEEEEEETTTCCEEEEEECS-S--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC--C--SEEEEE
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcC-C--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec--C--CCCCeE
Confidence            77654 99999999999998888764 2  25799999999665555 689999999999998887532  2  246899


Q ss_pred             eccccccc
Q 014154          353 AFADKEVA  360 (430)
Q Consensus       353 ~~s~~g~~  360 (430)
                      +|+|+|++
T Consensus       320 ~~s~dg~~  327 (353)
T 3vgz_A          320 ALSADGKT  327 (353)
T ss_dssp             EECTTSCE
T ss_pred             EEcCCCCE
Confidence            99999986

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.90  E-value=5.7e-21  Score=173.07  Aligned_cols=270  Identities=11%  Similarity=0.077  Sum_probs=177.2

Q ss_pred             eeEE-eecCCeEEEecCCC-Cc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC-CeeEEEEee
Q 014154           67 LLAV-ARKNGLTDILNPLN-GD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-GKASMRSIE  141 (430)
Q Consensus        67 ~l~~-g~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~~~  141 (430)
                      ++++ ++.++.|.+|++.. +.  .+..+.         +...+..+.+.+..        ..++++..+ +.+.+|++.
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~spdg--------~~l~~~~~~~~~v~~~~~~   68 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVVD---------VPGQVQPMVVSPDK--------RYLYVGVRPEFRVLAYRIA   68 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEE---------CSSCCCCEEECTTS--------SEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeEe---------cCCCCceEEECCCC--------CEEEEeecCCCeEEEEEec
Confidence            4444 47899999999853 32  122221         11233345554432        356666655 899999986


Q ss_pred             ecCccccCCCcceE-EeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECC---CCeeeEeeCCCCCCCCCCcCCcce
Q 014154          142 VTKVSAESSCSTVK-SWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD---KCEKIWTAKPPPKNSLGIFTPTWF  216 (430)
Q Consensus       142 ~~~~~~~~~~~~i~-~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~v  216 (430)
                      ...       +.+. +-.......+..++|+|++++|++++. ++.|.+||+.   .......+...          ..+
T Consensus        69 ~~~-------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----------~~~  131 (343)
T 1ri6_A           69 PDD-------GALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL----------DGC  131 (343)
T ss_dssp             TTT-------CCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC----------TTB
T ss_pred             CCC-------CceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC----------CCc
Confidence            211       1221 222223347889999999998877665 8899999994   33444444332          347


Q ss_pred             eEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceE----EEee-cCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccC
Q 014154          217 TSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM----SFDF-RETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRT  289 (430)
Q Consensus       217 ~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~----~~~~-~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~  289 (430)
                      .+++|  +|++++|++++ .++.|.+||+.+......    .+.. ....+.+++|+|++++|++++ .++.|.+||+..
T Consensus       132 ~~~~~--s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          132 HSANI--SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             CCCEE--CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             eEEEE--CCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            78899  89999888877 899999999987222221    2232 235788999999999776655 789999999953


Q ss_pred             --CeE--EeeeeCC---C--CCCeEEEEecCCCCeEEE-EeCCCcEEEEECC--CC--ceeeEEEeeccccceEEeeecc
Q 014154          290 --GKL--LGCFIGK---C--SGSIRSIARHPTLPIIAS-CGLDSYLRFWDIK--TR--QLLSAVFLKQHLNEVVFDSAFA  355 (430)
Q Consensus       290 --~~~--~~~~~~~---~--~~~v~~i~~~~~~~~l~s-~~~dg~i~iwd~~--~~--~~~~~~~~~~~~~~~v~~~~~s  355 (430)
                        ++.  ...+...   +  ...+..++|+|++++|++ +..++.|++||+.  ++  +.+..  +..+ .. +..++|+
T Consensus       210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~-~~-~~~~~~s  285 (343)
T 1ri6_A          210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF--QPTE-TQ-PRGFNVD  285 (343)
T ss_dssp             TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE--EECS-SS-CCCEEEC
T ss_pred             CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee--ecCC-Cc-cceEEEC
Confidence              432  2223211   0  235678999999988774 4578999999998  33  33333  3333 22 6889999


Q ss_pred             ccccc-cccC-CCCceEecCCCC
Q 014154          356 DKEVA-NAAA-DAPMLEIQNGND  376 (430)
Q Consensus       356 ~~g~~-~~~~-~d~~i~~~~~~~  376 (430)
                      |+|++ ++++ .++.+.+|+.+.
T Consensus       286 ~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          286 HSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             TTSSEEEEECTTTCEEEEEEEET
T ss_pred             CCCCEEEEecCCCCeEEEEEEcC
Confidence            99986 4444 689999996653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.2e-21  Score=176.99  Aligned_cols=267  Identities=12%  Similarity=0.069  Sum_probs=191.6

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCC-ceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDD-GIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  144 (430)
                      ++|++++.++.|.+||+.+++.+..+....       .. .+..+.+.+...       ..++++..++.+.+|++....
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~s~dg~-------~l~v~~~~~~~v~~~d~~~~~   67 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIAD-------AGPTPMVPMVAPGGR-------IAYATVNKSESLVKIDLVTGE   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTT-------CTTCCCCEEECTTSS-------EEEEEETTTTEEEEEETTTCC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCC-------CCCCccceEEcCCCC-------EEEEEeCCCCeEEEEECCCCC
Confidence            478999999999999999988777665310       00 133344443322       244566677899999864322


Q ss_pred             ccccCCCcceEEeeecC----CCceEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEeeCCCCCCCC
Q 014154          145 VSAESSCSTVKSWNVCA----SGTIAFSKVDISEKFSLFGG------------KGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (430)
Q Consensus       145 ~~~~~~~~~i~~~~~~~----~~~i~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~  208 (430)
                              .+..+....    ...+..++|+|++++|+++.            .++.|.+||+.+++.+..+...     
T Consensus        68 --------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-----  134 (337)
T 1pby_B           68 --------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-----  134 (337)
T ss_dssp             --------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-----
T ss_pred             --------eEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC-----
Confidence                    333344322    12577899999999999886            5789999999998877666542     


Q ss_pred             CCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC--------
Q 014154          209 GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--------  280 (430)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--------  280 (430)
                           ..+.+++|  +|++++|+++  ++.|.+||+.+++ ....+..+.. ...+.|+|++.+|+..+..+        
T Consensus       135 -----~~~~~~~~--s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~  203 (337)
T 1pby_B          135 -----RQITMLAW--ARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFY  203 (337)
T ss_dssp             -----SSCCCEEE--CTTSSCEEEE--SSSEEEEETTTTE-EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEE
T ss_pred             -----CCcceeEE--CCCCCEEEEe--CCeEEEEECCCCc-Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeee
Confidence                 34677888  8999988887  6899999999865 3555554431 11337899998776554332        


Q ss_pred             ----------------cEEEEEccCCeEE-eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec
Q 014154          281 ----------------DLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ  343 (430)
Q Consensus       281 ----------------~i~iwd~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  343 (430)
                                      .|.+||+.+++.. ..+..+ ...+.+++|+|++++|+++  ++.|++||+.+++.+..+... 
T Consensus       204 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-  279 (337)
T 1pby_B          204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-  279 (337)
T ss_dssp             EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-
T ss_pred             ccccccccccccccccceEEEeCCCCCceEeecCCC-CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-
Confidence                            4689999998874 223344 5678899999999999888  789999999999888775322 


Q ss_pred             cccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          344 HLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       344 ~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                         ..+.+++|+|+|++ ++++.++.|.+|+....
T Consensus       280 ---~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          280 ---HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             ---SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             ---CceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence               23578999999987 66788999999998764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=1.2e-21  Score=195.33  Aligned_cols=311  Identities=11%  Similarity=0.038  Sum_probs=200.2

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceee-eecCCCCC---------------CcceeeeeecCCCCCceeEEeecCCeEE
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVV-ERWGDPHS---------------SNCVLAASIDDSQNDPLLAVARKNGLTD   78 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~p~g~~l~~g~~dg~i~   78 (430)
                      .++++++.+| | +||+.++     +.+ ..+..+..               ...+.++.+  +|| .+++.+ .++.|.
T Consensus        36 ~~~~~~~~~~-i-~~d~~tg-----~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~--spd-~~~~~~-~~~~i~  104 (706)
T 2z3z_A           36 DNYVFIEGDD-L-VFNKANG-----KSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLD--AGR-GLVVLF-TQGGLV  104 (706)
T ss_dssp             TEEEEEETTE-E-EEEC------------CEEEEHHHHHTTC-----------CCCEEEEE--TTT-TEEEEE-ETTEEE
T ss_pred             CeEEEEeCCc-E-EEECCCC-----cEeeEEeechhHhhhhccchhccccccccCceeEEE--CCC-CeEEEE-ECCEEE
Confidence            4577777788 8 9999986     221 11111110               022455556  777 455555 459999


Q ss_pred             EecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeee-----cCccccCCCcc
Q 014154           79 ILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV-----TKVSAESSCST  153 (430)
Q Consensus        79 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~-----~~~~~~~~~~~  153 (430)
                      +||+.+++.......         ...+..+.|.+..        ..++. ..++.+.+|++..     ...        
T Consensus       105 ~~d~~~~~~~~l~~~---------~~~~~~~~~SpdG--------~~la~-~~~~~i~v~~~~~~~~~~g~~--------  158 (706)
T 2z3z_A          105 GFDMLARKVTYLFDT---------NEETASLDFSPVG--------DRVAY-VRNHNLYIARGGKLGEGMSRA--------  158 (706)
T ss_dssp             EEETTTTEEEEEECC---------TTCCTTCEECTTS--------SEEEE-EETTEEEEEECBCTTSCCCCC--------
T ss_pred             EEECCCCceEEccCC---------cccccCCcCCCCC--------CEEEE-EECCeEEEEecCcccccCCCc--------
Confidence            999988765433221         1122223343322        24444 5788999999865     321        


Q ss_pred             eEEeeecC-------------CCceEEEEEcCCCCEEEEEe---------------------------------CCCeEE
Q 014154          154 VKSWNVCA-------------SGTIAFSKVDISEKFSLFGG---------------------------------KGVEVN  187 (430)
Q Consensus       154 i~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~---------------------------------~d~~i~  187 (430)
                      .++.....             ...+.+++|+|++++|++++                                 .+..|+
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            11111111             11257899999999999987                                 446799


Q ss_pred             EEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-----cEEEEECCCCCcceEEEee-cCC--
Q 014154          188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLYDTSAQRRPVMSFDF-RET--  259 (430)
Q Consensus       188 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~-~~~--  259 (430)
                      +||+.+++........       .+...+.+++|  +|+++.|++++.++     .|++||+.++......... +..  
T Consensus       239 ~~d~~~~~~~~~~~~~-------~~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~  309 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGE-------PKEKFLTNLSW--SPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYV  309 (706)
T ss_dssp             EEETTTTEEEECCCCS-------CTTCEEEEEEE--CTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCC
T ss_pred             EEECCCCceEeeccCC-------CCceeEeeEEE--ECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeE
Confidence            9999988765433211       12256889999  89999999887775     8999999986332332322 222  


Q ss_pred             -CeEEEEecC--CCCEEEEEeCCCcEEEEEcc-CCeEEeeeeCCCCCCeEE-EEecCCCCeEEEEeC-CC----cEEEEE
Q 014154          260 -PIKAVAEEP--DSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGL-DS----YLRFWD  329 (430)
Q Consensus       260 -~i~~~~~sp--~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~s~~~-dg----~i~iwd  329 (430)
                       .+.+++|+|  +|++|++++.++.++||++. ++..+..+..+ ...+.. ++|+|+++.|+.++. ++    .|+.||
T Consensus       310 ~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~-~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          310 EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG-EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS-SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC-CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence             246789999  99999999999999999886 66777777776 667776 799999987766554 44    677788


Q ss_pred             CCCCceeeEEEeeccccceEEeeeccccccc-cccCC-C---CceEecCCCCC
Q 014154          330 IKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD-A---PMLEIQNGNDT  377 (430)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~-d---~~i~~~~~~~~  377 (430)
                      +.+++. ..  +. + ...+.+++|+|||++ ++... +   +.+.+|+....
T Consensus       389 ~~~~~~-~~--l~-~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          389 IKGGKT-KD--LT-P-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             TTCCCC-EE--SC-C-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             cCCCCc-ee--cc-C-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            877663 33  22 3 334689999999987 44322 2   56999987653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.90  E-value=3.1e-21  Score=200.20  Aligned_cols=191  Identities=13%  Similarity=0.106  Sum_probs=156.0

Q ss_pred             ceEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCc-ceeEEEEeecCCCCEEEEEeCCCcEE-
Q 014154          164 TIAFSKVD-ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT-WFTSAAFLSIDDHRKFVAGTNDHQVR-  240 (430)
Q Consensus       164 ~i~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~s~~~dg~i~-  240 (430)
                      .+..++|+ |++++|++++ ++.|++|++..+.... +..+.         . .+..++|  + ++..|++++.+..+. 
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~---------~~~~~~~~~--s-dg~~l~~~s~~~~l~~  362 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPL---------RIRYVRRGG--D-TKVAFIHGTREGDFLG  362 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCS---------CEEEEEECS--S-SEEEEEEEETTEEEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCC---------cceEEeeeE--c-CCCeEEEEECCCceEE
Confidence            57889999 9999998887 7799999998766443 33322         4 6888999  8 999999999888898 


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      +||+..+.  ...+..|...+.+++|+|||++|++++.++.|++||+.+++....+.+| ...+..++|+|||++|++++
T Consensus       363 ~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~-~~~v~~~~~SpDG~~la~~~  439 (1045)
T 1k32_A          363 IYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR-EAMITDFTISDNSRFIAYGF  439 (1045)
T ss_dssp             EEETTTCC--EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCCEEECTTSCEEEEEE
T ss_pred             EEECCCCC--ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC-CCCccceEECCCCCeEEEEe
Confidence            99998754  3445577789999999999999999999999999999999988777777 78899999999999998887


Q ss_pred             CCC----------cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          321 LDS----------YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       321 ~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      .++          .|++||+.+++ +..  +..+ ...+..++|+|||+. ++++.++...+|+..
T Consensus       440 ~~~~~~~~~~~~~~i~l~d~~~g~-~~~--l~~~-~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~  501 (1045)
T 1k32_A          440 PLKHGETDGYVMQAIHVYDMEGRK-IFA--ATTE-NSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  501 (1045)
T ss_dssp             EECSSTTCSCCEEEEEEEETTTTE-EEE--CSCS-SSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             cCccccccCCCCCeEEEEECCCCc-EEE--eeCC-CcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence            654          89999999887 333  4455 334578999999998 777777877777754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=1.7e-21  Score=194.78  Aligned_cols=307  Identities=9%  Similarity=0.015  Sum_probs=192.3

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC-cceeeeeecCCCCCceeEEeecC---------CeEEEecCC
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQNDPLLAVARKN---------GLTDILNPL   83 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~g~~l~~g~~d---------g~i~iwd~~   83 (430)
                      ..+++..+.||+|++||+.++     +....+..|... ..+..+.+  +|||++|++++.+         +.|.+||+.
T Consensus        27 dg~~~~~~~dg~i~~~d~~~g-----~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~   99 (723)
T 1xfd_A           27 DTEFIYREQKGTVRLWNVETN-----TSTVLIEGKKIESLRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (723)
T ss_dssp             SSCBCCCCSSSCEEEBCGGGC-----CCEEEECTTTTTTTTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CCcEEEEeCCCCEEEEECCCC-----cEEEEeccccccccccceEEE--CCCCCEEEEEecCccceeecceeeEEEEECC
Confidence            345666688999999999987     455555555431 12445556  8899999998764         788899998


Q ss_pred             CCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC-
Q 014154           84 NGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS-  162 (430)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~-  162 (430)
                      +++. ..+...     ..+...+..+.|.+. .       ..++.++. +.+.+|++....        ..++...... 
T Consensus       100 ~~~~-~~l~~~-----~~~~~~~~~~~~SPd-G-------~~la~~~~-~~i~~~~~~~g~--------~~~~~~~~~~~  156 (723)
T 1xfd_A          100 HGDP-QSLDPP-----EVSNAKLQYAGWGPK-G-------QQLIFIFE-NNIYYCAHVGKQ--------AIRVVSTGKEG  156 (723)
T ss_dssp             SCCC-EECCCT-----TCCSCCCSBCCBCSS-T-------TCEEEEET-TEEEEESSSSSC--------CEEEECCCBTT
T ss_pred             CCce-EeccCC-----ccccccccccEECCC-C-------CEEEEEEC-CeEEEEECCCCc--------eEEEecCCCCC
Confidence            8875 222211     011111222333222 1       24554443 678888765332        2222221111 


Q ss_pred             ----------------CceEEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECC
Q 014154          163 ----------------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLD  192 (430)
Q Consensus       163 ----------------~~i~~~~~~~~~~~l~~~~~d~----------------------------------~i~~~d~~  192 (430)
                                      ..+.+++|+|++++|++++.++                                  .|++||+.
T Consensus       157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~  236 (723)
T 1xfd_A          157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN  236 (723)
T ss_dssp             TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred             ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence                            1237899999999999887553                                  79999998


Q ss_pred             CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC----CCcEEEEECCCCCcceEEEee-cCCCe----EE
Q 014154          193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDF-RETPI----KA  263 (430)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~-~~~~i----~~  263 (430)
                      +++....+..+..   ...+...+..++|  +||+++|++...    +..|++||+.+++. ...+.. +...+    ..
T Consensus       237 ~~~~~~~l~~~~~---~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~  310 (723)
T 1xfd_A          237 GPTHDLEMMPPDD---PRMREYYITMVKW--ATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNEE  310 (723)
T ss_dssp             SSCCCEECCCCCC---GGGSSEEEEEEEE--SSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEEECSSCCCCCCCC
T ss_pred             CCceeEEeeCCcc---CCCccceeEEEEE--eCCCeEEEEEEcCCCCeEEEEEEeCCCCcc-eEEEEeccCCEEeccCCC
Confidence            8775455543210   0011256889999  899998877653    35799999998663 444433 33433    37


Q ss_pred             EEecCCCCEEEE--EeCCC------cEEEEE-ccCCe--EEeeeeCCCCCCeEE-EEecCCCCeEEEEeCC---CcEEEE
Q 014154          264 VAEEPDSFNIYI--GNGSG------DLASVD-IRTGK--LLGCFIGKCSGSIRS-IARHPTLPIIASCGLD---SYLRFW  328 (430)
Q Consensus       264 ~~~sp~~~~l~~--~~~d~------~i~iwd-~~~~~--~~~~~~~~~~~~v~~-i~~~~~~~~l~s~~~d---g~i~iw  328 (430)
                      ++|+|||+.|+.  +..++      .|.+|| ...++  +...+..+ ...+.. ++|+|+|+.|+..+.+   +.++||
T Consensus       311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  389 (723)
T 1xfd_A          311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY  389 (723)
T ss_dssp             CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred             ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence            899999997775  44566      577778 34444  14455543 344554 6999999998766655   789999


Q ss_pred             ECCCCc--eeeEEEeec---cccceEEeeeccccccc
Q 014154          329 DIKTRQ--LLSAVFLKQ---HLNEVVFDSAFADKEVA  360 (430)
Q Consensus       329 d~~~~~--~~~~~~~~~---~~~~~v~~~~~s~~g~~  360 (430)
                      ++....  ....  +..   + ...+..++|+|||++
T Consensus       390 ~~~~~~~~~~~~--l~~~~~~-~~~~~~~~~spdg~~  423 (723)
T 1xfd_A          390 SANTVGNFNRQC--LSCDLVE-NCTYFSASFSHSMDF  423 (723)
T ss_dssp             EECSSTTCCCBC--SSTTSSS-SCCCCEEEECTTSSE
T ss_pred             EEeCCCCCCcce--ecccccC-CCCeEEEEECCCCCE
Confidence            986432  2222  322   2 344678999999987

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.89  E-value=3.3e-21  Score=193.25  Aligned_cols=310  Identities=8%  Similarity=0.005  Sum_probs=204.6

Q ss_pred             cceeeecC-CC-----ceEEEEccCCCCCcceeeeecCCCCCC----------------------cceeeeeecCCCCCc
Q 014154           15 LRALTFDS-LG-----LIKVIEARGEHGGVPKVVERWGDPHSS----------------------NCVLAASIDDSQNDP   66 (430)
Q Consensus        15 ~~l~t~~~-dg-----~i~vw~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~p~g~   66 (430)
                      .+|++++. ||     .|++||+.++     +....+..+...                      ..+..+.|  +|||+
T Consensus        49 ~~la~~~~~d~~~~~~~i~~~d~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~  121 (741)
T 2ecf_A           49 SRVTFLRGKDSDRNQLDLWSYDIGSG-----QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW--SPDAQ  121 (741)
T ss_dssp             SEEEEEECCSSCTTEEEEEEEETTTC-----CEEEEECGGGTC--------------------CCEESCCCEE--CTTSS
T ss_pred             CEEEEEeccCCCCcccEEEEEECCCC-----ceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE--CCCCC
Confidence            35777777 88     8999999986     343333322211                      12345556  89999


Q ss_pred             eeEEeecCCeEEEecCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecC
Q 014154           67 LLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTK  144 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~  144 (430)
                      +|++++. +.|.+||+.++.  ....+..        +...+..+.|.+..        ..++.++ ++.+.+|++....
T Consensus       122 ~l~~~~~-~~i~~~d~~~~~~~~~~~l~~--------~~~~~~~~~~SPDG--------~~la~~~-~~~i~~~d~~~g~  183 (741)
T 2ecf_A          122 RLLFPLG-GELYLYDLKQEGKAAVRQLTH--------GEGFATDAKLSPKG--------GFVSFIR-GRNLWVIDLASGR  183 (741)
T ss_dssp             EEEEEET-TEEEEEESSSCSTTSCCBCCC--------SSSCEEEEEECTTS--------SEEEEEE-TTEEEEEETTTTE
T ss_pred             EEEEEeC-CcEEEEECCCCCcceEEEccc--------CCcccccccCCCCC--------CEEEEEe-CCcEEEEecCCCC
Confidence            9999876 999999998772  2223222        22356666655432        2455444 5688888864321


Q ss_pred             ccccCCCcceEEeeecCCC----------------ceEEEEEcCCCCEEEEEeCCC------------------------
Q 014154          145 VSAESSCSTVKSWNVCASG----------------TIAFSKVDISEKFSLFGGKGV------------------------  184 (430)
Q Consensus       145 ~~~~~~~~~i~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~d~------------------------  184 (430)
                               .......+..                .+..++|+|++++|++++.|+                        
T Consensus       184 ---------~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~  254 (741)
T 2ecf_A          184 ---------QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP  254 (741)
T ss_dssp             ---------EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred             ---------EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence                     1111111111                247799999999999988765                        


Q ss_pred             ---------eEEEEECCC-CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-----CCcEEEEECCCCCc
Q 014154          185 ---------EVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----DHQVRLYDTSAQRR  249 (430)
Q Consensus       185 ---------~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~  249 (430)
                               .|++||+.+ ++........       .+...+..++|   |+++.|++++.     +..|++||+.+++.
T Consensus       255 ~~g~~~~~~~l~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~---pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~  324 (741)
T 2ecf_A          255 AAGDANVQVKLGVISPAEQAQTQWIDLGK-------EQDIYLARVNW---RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ  324 (741)
T ss_dssp             BTTSCCCEEEEEEECSSTTCCCEEECCCS-------CSSEEEEEEEE---EETTEEEEEEEETTSSEEEEEEEETTTCCE
T ss_pred             CCCCCCCeeEEEEEECCCCCceEEecCCC-------CcceEEEEEEe---CCCCEEEEEEecccCCeEEEEEEECCCCce
Confidence                     788999987 7654332220       12256788888   47888887653     56799999998663


Q ss_pred             ceEEEeecCC----CeEEEEecCCCCEEEEEeCCCcEEEEEcc-CCeEEeeeeCCCCCCeEEE-EecCCCCeEEE-EeCC
Q 014154          250 PVMSFDFRET----PIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSI-ARHPTLPIIAS-CGLD  322 (430)
Q Consensus       250 ~~~~~~~~~~----~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~i-~~~~~~~~l~s-~~~d  322 (430)
                       ...+..+..    .+.+++|+|||+++++++.++.++||.+. .++ ...+..+ ...+..+ .|+|+++.|+. ++.+
T Consensus       325 -~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~-~~~v~~~~~~s~dg~~l~~~~~~~  401 (741)
T 2ecf_A          325 -RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG-NWSVDELLAVDEKAGLAYFRAGIE  401 (741)
T ss_dssp             -EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS-SSCEEEEEEEETTTTEEEEEECSS
T ss_pred             -EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec-ceEEEeEeEEeCCCCEEEEEEeCC
Confidence             455555443    45689999999999999999988887765 445 6677776 6778887 59999987754 4455


Q ss_pred             C--cEEEEECCC-CceeeEEEeeccccceEEeeeccccccc-cccCCC----CceEecCCC
Q 014154          323 S--YLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA----PMLEIQNGN  375 (430)
Q Consensus       323 g--~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d----~~i~~~~~~  375 (430)
                      +  .++||++.. +.....  +..  ...+..++|+|||+. +....+    ..+.+|+..
T Consensus       402 ~~~~~~l~~~~~~g~~~~~--l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          402 SARESQIYAVPLQGGQPQR--LSK--APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             CTTCBEEEEEETTCCCCEE--CCC--SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             CCceEEEEEEEcCCCCeee--ccc--CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            5  899999864 554554  333  233579999999997 333222    467777654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=4.9e-21  Score=191.99  Aligned_cols=294  Identities=13%  Similarity=0.056  Sum_probs=195.4

Q ss_pred             eeeeeecCCCCCceeEEeec-CC-----eEEEecCCCCcccceeeccCCC----CCCCCC------------CceEEEEE
Q 014154           54 VLAASIDDSQNDPLLAVARK-NG-----LTDILNPLNGDLRVAISNAGDS----GAQPED------------DGIVGLHL  111 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~-dg-----~i~iwd~~~~~~~~~~~~~~~~----~~~~~~------------~~i~~~~~  111 (430)
                      +..+.|  +|||++|++++. |+     .|.+||+.+++....+......    ..+...            ..+..+.|
T Consensus        39 ~~~~~~--SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           39 LMKPKV--APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CEEEEE--CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCceE--ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            455666  889999999988 88     8999999988765555432110    000000            11233333


Q ss_pred             eecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 014154          112 FKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDL  191 (430)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~  191 (430)
                      .+..        ..++.++. +.+.+|++.....      ..++.. ..+...+..++|+|+|++|++++. +.|++||+
T Consensus       117 SpDg--------~~l~~~~~-~~i~~~d~~~~~~------~~~~~l-~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~  179 (741)
T 2ecf_A          117 SPDA--------QRLLFPLG-GELYLYDLKQEGK------AAVRQL-THGEGFATDAKLSPKGGFVSFIRG-RNLWVIDL  179 (741)
T ss_dssp             CTTS--------SEEEEEET-TEEEEEESSSCST------TSCCBC-CCSSSCEEEEEECTTSSEEEEEET-TEEEEEET
T ss_pred             CCCC--------CEEEEEeC-CcEEEEECCCCCc------ceEEEc-ccCCcccccccCCCCCCEEEEEeC-CcEEEEec
Confidence            3322        35555554 8899998754310      011111 134567899999999999998875 59999999


Q ss_pred             CCCeeeEeeCCCCCCCCCCcCC--------cceeEEEEeecCCCCEEEEEeCCC--------------------------
Q 014154          192 DKCEKIWTAKPPPKNSLGIFTP--------TWFTSAAFLSIDDHRKFVAGTNDH--------------------------  237 (430)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~s~~~dg--------------------------  237 (430)
                      .+++.......+.... .....        ..+..++|  +|||++|++++.|+                          
T Consensus       180 ~~g~~~~~~~~~~~~~-~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~  256 (741)
T 2ecf_A          180 ASGRQMQLTADGSTTI-GNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA  256 (741)
T ss_dssp             TTTEEEECCCCCCSSE-EESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred             CCCCEEEeccCCccce-eccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence            9877654433321100 00000        11477899  89999999988765                          


Q ss_pred             -------cEEEEECCC-CCcceEEEe--ecCCCeEEEEecCCCCEEEEEeC-----CCcEEEEEccCCeEEeeeeCCCCC
Q 014154          238 -------QVRLYDTSA-QRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNG-----SGDLASVDIRTGKLLGCFIGKCSG  302 (430)
Q Consensus       238 -------~i~iwd~~~-~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~  302 (430)
                             .|.+||+.+ ++. .....  .|...+..++| |||++|++++.     +..|++||+.+++....+..+...
T Consensus       257 g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~  334 (741)
T 2ecf_A          257 GDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT  334 (741)
T ss_dssp             TSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS
T ss_pred             CCCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC
Confidence                   788999987 653 33222  36678999999 99999997764     567999999999887777655222


Q ss_pred             ---CeEEEEecCCCCeEEEEeCCCcEEEEECC-CCceeeEEEeeccccceEEee-eccccccc--cccCCCC--ceEecC
Q 014154          303 ---SIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDS-AFADKEVA--NAAADAP--MLEIQN  373 (430)
Q Consensus       303 ---~v~~i~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~--~~~~~d~--~i~~~~  373 (430)
                         .+..++|+|+|+++++++.||.++||.+. ++. ...  +..+ ...+..+ .|+|+|+.  ++++.++  .+++|+
T Consensus       335 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~--l~~~-~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          335 WVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAA--LTHG-NWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             CCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEE--SCCS-SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             cCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eee--eeec-ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence               45689999999999999999988888765 344 444  4445 3335666 69999986  4455555  889998


Q ss_pred             CC
Q 014154          374 GN  375 (430)
Q Consensus       374 ~~  375 (430)
                      .+
T Consensus       411 ~~  412 (741)
T 2ecf_A          411 VP  412 (741)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=3.3e-22  Score=186.74  Aligned_cols=210  Identities=10%  Similarity=0.029  Sum_probs=155.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC------CCCCCCcCCcceeEEEEeecCCCCEEE----E
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP------KNSLGIFTPTWFTSAAFLSIDDHRKFV----A  232 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~----s  232 (430)
                      ..+..+++++++.++++++.++ +++|+............+.      .....+.+...|.+++|  +|++++|+    +
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~--spdg~~lav~~~s  113 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLAL--SCDNLTLSACMMS  113 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEE--CTTSCEEEEEEEE
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEE--cCCCCEEEEEEec
Confidence            4578899999999999999887 8998764211100000000      00001122356999999  89999999    7


Q ss_pred             EeCCCcEEEEECCCC-----C--cc---eEEEeecCCCeEEEEecCC-CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCC
Q 014154          233 GTNDHQVRLYDTSAQ-----R--RP---VMSFDFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS  301 (430)
Q Consensus       233 ~~~dg~i~iwd~~~~-----~--~~---~~~~~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  301 (430)
                      ++.|+.|++||+.+.     .  .+   +..+.+|...|.+++|+|+ +.+|++++.||.|++||++++..+....+| .
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-~  192 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPS-T  192 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECG-G
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCC-C
Confidence            888999999998753     1  11   3455668899999999998 789999999999999999999877777777 8


Q ss_pred             CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc----cceEEeeecccccccc--ccCCCC------ce
Q 014154          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL----NEVVFDSAFADKEVAN--AAADAP------ML  369 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~s~~g~~~--~~~~d~------~i  369 (430)
                      ..|++++|+|+|.+|++|+.||.|++||++ ++....+......    ...+.+++|++++.++  +...+|      .+
T Consensus       193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v  271 (434)
T 2oit_A          193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV  271 (434)
T ss_dssp             GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred             CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence            899999999999999999999999999998 6655553221111    2267999999998883  233343      37


Q ss_pred             EecCCCCC
Q 014154          370 EIQNGNDT  377 (430)
Q Consensus       370 ~~~~~~~~  377 (430)
                      ++|+....
T Consensus       272 ~i~~l~~~  279 (434)
T 2oit_A          272 VMALLPKK  279 (434)
T ss_dssp             EEEECCCT
T ss_pred             EEEEeccC
Confidence            88987653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=1.6e-20  Score=194.80  Aligned_cols=298  Identities=16%  Similarity=0.110  Sum_probs=208.7

Q ss_pred             cCCCceEEEEccCCCCCcceeeeecCCC-----------CCCcceeeeeecCC-CCCceeEEeecCCeEEEecCCCCccc
Q 014154           21 DSLGLIKVIEARGEHGGVPKVVERWGDP-----------HSSNCVLAASIDDS-QNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus        21 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      ..++.|.+|++...      .+..+..+           ...  +..+.|  + |+|++|++++ ++.|.+|++..+...
T Consensus       262 ~~~~~i~~~d~~~~------~l~~l~~~~~~~~~~~~~~~~~--v~~~~~--S~pdG~~la~~~-~~~i~~~~~~~~~~~  330 (1045)
T 1k32_A          262 SKGGSIYIFNPDTE------KIEKIEIGDLESPEDRIISIPS--KFAEDF--SPLDGDLIAFVS-RGQAFIQDVSGTYVL  330 (1045)
T ss_dssp             EETTEEEEECTTTC------CEEECCCCCCCBCCSEEEECGG--GGEEEE--EECGGGCEEEEE-TTEEEEECTTSSBEE
T ss_pred             EeCCEEEEecCCce------EeeeeccCcccccccccccccc--cceeee--cCCCCCEEEEEE-cCEEEEEcCCCCceE
Confidence            36889999999543      22244432           223  344555  7 8899999887 789999999776533


Q ss_pred             ceeeccCCCCCCCCCC-ceEEEEEeecCcccccccCceEEEEccCCeeE-EEEeeecCccccCCCcceEEeeecCCCceE
Q 014154           89 VAISNAGDSGAQPEDD-GIVGLHLFKRQREESSSRSRTLLTCTTKGKAS-MRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (430)
Q Consensus        89 ~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~  166 (430)
                      . +..        +.. .+..+.|.  ..       ..++.++.++.+. +|++..         +.++... .+...+.
T Consensus       331 ~-~~~--------~~~~~~~~~~~s--dg-------~~l~~~s~~~~l~~~~d~~~---------~~~~~l~-~~~~~~~  382 (1045)
T 1k32_A          331 K-VPE--------PLRIRYVRRGGD--TK-------VAFIHGTREGDFLGIYDYRT---------GKAEKFE-ENLGNVF  382 (1045)
T ss_dssp             E-CSC--------CSCEEEEEECSS--SE-------EEEEEEETTEEEEEEEETTT---------CCEEECC-CCCCSEE
T ss_pred             E-ccC--------CCcceEEeeeEc--CC-------CeEEEEECCCceEEEEECCC---------CCceEec-CCcccee
Confidence            2 211        122 34444443  32       3566666655555 665432         1233333 4567899


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---------
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---------  237 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---------  237 (430)
                      .++|+|++++|++++.++.|++||+.+++.......+.         ..+.+++|  +|++++|++++.++         
T Consensus       383 ~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~---------~~v~~~~~--SpDG~~la~~~~~~~~~~~~~~~  451 (1045)
T 1k32_A          383 AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE---------AMITDFTI--SDNSRFIAYGFPLKHGETDGYVM  451 (1045)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS---------SCCCCEEE--CTTSCEEEEEEEECSSTTCSCCE
T ss_pred             eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCC---------CCccceEE--CCCCCeEEEEecCccccccCCCC
Confidence            99999999999999999999999999988766654443         56788999  89999998887654         


Q ss_pred             -cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE------------------------
Q 014154          238 -QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL------------------------  292 (430)
Q Consensus       238 -~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~------------------------  292 (430)
                       .|++||+.+++  ...+..|...+.+++|+|+|++|++++.++...+|+......                        
T Consensus       452 ~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  529 (1045)
T 1k32_A          452 QAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV  529 (1045)
T ss_dssp             EEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC
T ss_pred             CeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccC
Confidence             89999999754  567777888899999999999999999887777776433211                        


Q ss_pred             -------------------EeeeeCCCCCCeEEEEecCCCCeEEE-------------EeCCCcEEEEECCCCceeeEEE
Q 014154          293 -------------------LGCFIGKCSGSIRSIARHPTLPIIAS-------------CGLDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       293 -------------------~~~~~~~~~~~v~~i~~~~~~~~l~s-------------~~~dg~i~iwd~~~~~~~~~~~  340 (430)
                                         +..+..+ ...+..+.++|++.++++             ......|++||+.+++....  
T Consensus       530 ~~~~~~~~~~~d~~g~~~~~~~l~~~-~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l--  606 (1045)
T 1k32_A          530 PRSMTSEAGEYDLNDMYKRSSPINVD-PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV--  606 (1045)
T ss_dssp             CGGGSCCCCCCCCTTGGGGCEECSCC-CBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE--
T ss_pred             cCccccccccccccCHhHceEEcCCC-CCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEe--
Confidence                               1122233 567889999999987775             12345788999988875432  


Q ss_pred             eeccccceEEeeeccccccccccCCCCceEecCCCCCc
Q 014154          341 LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       341 ~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~~  378 (430)
                       .    ..+..++|||||+.+..+.++.+++|+.....
T Consensus       607 -~----~~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~  639 (1045)
T 1k32_A          607 -K----NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP  639 (1045)
T ss_dssp             -E----EEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred             -e----cCcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence             1    33678899999998444445589999987644

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=2.9e-21  Score=193.16  Aligned_cols=292  Identities=8%  Similarity=-0.049  Sum_probs=190.2

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC-
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK-  132 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-  132 (430)
                      ...+.|  +|||+++++ +.||.|++||+.+++....+..+...     ...+..+.+.+..        ..++.++.+ 
T Consensus        19 ~~~~~~--spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~-----~~~v~~~~~SpDg--------~~l~~~~~~~   82 (723)
T 1xfd_A           19 DPEAKW--ISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE-----SLRAIRYEISPDR--------EYALFSYNVE   82 (723)
T ss_dssp             CCCCCB--SSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT-----TTTCSEEEECTTS--------SEEEEEESCC
T ss_pred             ccccEE--cCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc-----ccccceEEECCCC--------CEEEEEecCc
Confidence            344555  889998776 68999999999998876665442110     0124455554433        356666543 


Q ss_pred             --------CeeEEEEeeecCccccCCCcceEEeee--cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCC
Q 014154          133 --------GKASMRSIEVTKVSAESSCSTVKSWNV--CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       133 --------g~~~v~~~~~~~~~~~~~~~~i~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                              +.+.+|++....         .+....  .+...+..++|+|+|+.|++++. +.|++||+.+++.......
T Consensus        83 ~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           83 PIYQHSYTGYYVLSKIPHGD---------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             CCSSSCCCSEEEEEESSSCC---------CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             cceeecceeeEEEEECCCCc---------eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC
Confidence                    567788765332         111111  12234788999999999999886 6999999998776654443


Q ss_pred             CCCCCCCCcCC---------cceeEEEEeecCCCCEEEEEeCCC----------------------------------cE
Q 014154          203 PPKNSLGIFTP---------TWFTSAAFLSIDDHRKFVAGTNDH----------------------------------QV  239 (430)
Q Consensus       203 ~~~~~~~~~~~---------~~v~~~~~~~~~~~~~l~s~~~dg----------------------------------~i  239 (430)
                      +........++         ..+.+++|  +|||+.|++++.++                                  .|
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            22110000000         12378899  99999999987553                                  79


Q ss_pred             EEEECCCCCcceEEEeec------CCCeEEEEecCCCCEEEEEeC----CCcEEEEEccCCeEEeeeeCCCCCCeE----
Q 014154          240 RLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKLLGCFIGKCSGSIR----  305 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~v~----  305 (430)
                      ++||+.++.. ...+..+      ...+.+++|+|||++|++...    +..|++||+.++++...+..++...+.    
T Consensus       231 ~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  309 (723)
T 1xfd_A          231 HVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE  309 (723)
T ss_dssp             EEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred             EEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence            9999987653 3455543      567899999999998877653    357999999999887666543244443    


Q ss_pred             EEEecCCCCeEEE--EeCCC------cEEEEE-CCCCce--eeEEEeeccccceEEeeeccccccc-ccc-CCC--CceE
Q 014154          306 SIARHPTLPIIAS--CGLDS------YLRFWD-IKTRQL--LSAVFLKQHLNEVVFDSAFADKEVA-NAA-ADA--PMLE  370 (430)
Q Consensus       306 ~i~~~~~~~~l~s--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~-~~~-~~d--~~i~  370 (430)
                      .++|+|||+.|+.  +..++      .|++|| ..++..  ...  +..+.......++|+|||+. ++. ..+  +.++
T Consensus       310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  387 (723)
T 1xfd_A          310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS--ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQ  387 (723)
T ss_dssp             CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB--SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCE
T ss_pred             CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE--eecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceE
Confidence            7899999997775  45666      577788 344441  333  22221333344799999997 444 444  7899


Q ss_pred             ecCCCC
Q 014154          371 IQNGND  376 (430)
Q Consensus       371 ~~~~~~  376 (430)
                      +|..+.
T Consensus       388 l~~~~~  393 (723)
T 1xfd_A          388 LYSANT  393 (723)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            998753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.87  E-value=1.7e-18  Score=158.16  Aligned_cols=301  Identities=10%  Similarity=0.037  Sum_probs=182.7

Q ss_pred             cceeee----cCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC----CeEEEecCCC--
Q 014154           15 LRALTF----DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN----GLTDILNPLN--   84 (430)
Q Consensus        15 ~~l~t~----~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d----g~i~iwd~~~--   84 (430)
                      ..++.|    +.++.|.+|.+... .+....+..+  +......  +.+  +|+|++|++++.+    +.|.+|++..  
T Consensus        14 ~~~~vg~y~~~~~~~i~~~~~d~~-~g~~~~~~~~--~~~~p~~--l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~   86 (361)
T 3scy_A           14 LTMLVGTYTSGNSKGIYTFRFNEE-TGESLPLSDA--EVANPSY--LIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEK   86 (361)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEETT-TCCEEEEEEE--ECSCCCS--EEE--CTTSSEEEEEECCSSTTCEEEEEEEETTT
T ss_pred             eEEEEEeccCCCCCCEEEEEEeCC-CCCEEEeecc--cCCCCce--EEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCC
Confidence            345555    45678999988653 2222333333  3344333  444  7788999998875    7999998865  


Q ss_pred             CcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec----
Q 014154           85 GDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC----  160 (430)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~----  160 (430)
                      ++. ..+....     ........+.+ + ..       ..+++...++.+.+|++.......    .........    
T Consensus        87 g~~-~~~~~~~-----~~~~~p~~~~~-d-g~-------~l~~~~~~~~~v~~~~~~~~g~~~----~~~~~~~~~g~~~  147 (361)
T 3scy_A           87 GTL-HLLNTQK-----TMGADPCYLTT-N-GK-------NIVTANYSGGSITVFPIGQDGALL----PASDVIEFKGSGP  147 (361)
T ss_dssp             TEE-EEEEEEE-----CSSSCEEEEEE-C-SS-------EEEEEETTTTEEEEEEBCTTSCBC----SCSEEEECCCCCS
T ss_pred             CcE-EEeeEec-----cCCCCcEEEEE-C-CC-------EEEEEECCCCEEEEEEeCCCCcCc----ccceeEEccCCCC
Confidence            332 2221110     01123444444 2 11       134444467899999986322100    011111111    


Q ss_pred             -----CCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee------e------EeeCCCCCCCCCCcCCcceeEEEEe
Q 014154          161 -----ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK------I------WTAKPPPKNSLGIFTPTWFTSAAFL  222 (430)
Q Consensus       161 -----~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~------~------~~~~~~~~~~~~~~~~~~v~~~~~~  222 (430)
                           +...+.+++|+|++++|++++ .++.|.+|++.....      +      .......        ...+..++| 
T Consensus       148 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~~~~-  218 (361)
T 3scy_A          148 DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP--------GSGPRHLIF-  218 (361)
T ss_dssp             CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT--------TCCEEEEEE-
T ss_pred             CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC--------CCCCeEEEE-
Confidence                 123468899999999776665 478999999875331      1      1111111        144678999 


Q ss_pred             ecCCCCEEEEEe-CCCcEEEEECCCCCc-ceEEEee---cCCCeEEEEecCCCCEEEEEeCC--CcEEEEEcc--CCe--
Q 014154          223 SIDDHRKFVAGT-NDHQVRLYDTSAQRR-PVMSFDF---RETPIKAVAEEPDSFNIYIGNGS--GDLASVDIR--TGK--  291 (430)
Q Consensus       223 ~~~~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d--~~i~iwd~~--~~~--  291 (430)
                       +|+++++++++ .++.|.+||+.++.. .+..+..   +......++|+|+|++|+++..+  +.|.+|++.  +++  
T Consensus       219 -spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~  297 (361)
T 3scy_A          219 -NSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT  297 (361)
T ss_dssp             -CTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE
T ss_pred             -cCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE
Confidence             89999887777 689999999986432 1222222   23456799999999999777665  899999995  454  


Q ss_pred             EEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEE--ECCCCceeeEEEeeccccceEEeeecc
Q 014154          292 LLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFW--DIKTRQLLSAVFLKQHLNEVVFDSAFA  355 (430)
Q Consensus       292 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~s  355 (430)
                      .+..+..  ...+..++|+|+|++|++++ .++.|.+|  |..++++.... ...+.. .+.+++|.
T Consensus       298 ~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~-~~~~~~-~p~~v~~~  360 (361)
T 3scy_A          298 KVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK-KDIKVD-KPVCLKFV  360 (361)
T ss_dssp             EEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS-CCEECS-SEEEEEEE
T ss_pred             EeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc-eeeeCC-CCeEEEEc
Confidence            3444443  34678999999999888887 67899996  55577765431 112222 35777775

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=1.2e-19  Score=164.67  Aligned_cols=239  Identities=12%  Similarity=0.040  Sum_probs=170.5

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      .+++.++++++.++.|.+||+.+++.+..+....       ......+.+.+...       ..+++...++.+.+|++.
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~s~dg~-------~~~v~~~~~~~i~~~d~~   73 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-------KFGPGTAMMAPDNR-------TAYVLNNHYGDIYGIDLD   73 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-------CCSSCEEEECTTSS-------EEEEEETTTTEEEEEETT
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-------CCCCceeEECCCCC-------EEEEEeCCCCcEEEEeCC
Confidence            5567789999999999999999988777665421       01233445543322       244566678899999864


Q ss_pred             ecCccccCCCcceEEeeecC-----CCceEEEEEcCCCCEEEEEeCC------------CeEEEEECCCCeee---EeeC
Q 014154          142 VTKVSAESSCSTVKSWNVCA-----SGTIAFSKVDISEKFSLFGGKG------------VEVNVWDLDKCEKI---WTAK  201 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~---~~~~  201 (430)
                      ...        .+......+     ...+..++|+|++++|++++.+            +.|.+||+.+++..   ..+.
T Consensus        74 t~~--------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~  145 (349)
T 1jmx_B           74 TCK--------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  145 (349)
T ss_dssp             TTE--------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             CCc--------EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc
Confidence            321        233333322     2337789999999999998865            89999999874432   2222


Q ss_pred             CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecC-----------------------
Q 014154          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-----------------------  258 (430)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------------  258 (430)
                      .          +..+.+++|  +|+++ +++++  +.|.+||+.+++. +..+..+.                       
T Consensus       146 ~----------~~~~~~~~~--s~dg~-l~~~~--~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (349)
T 1jmx_B          146 M----------PRQVYLMRA--ADDGS-LYVAG--PDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYFWPHQSPRHE  209 (349)
T ss_dssp             C----------CSSCCCEEE--CTTSC-EEEES--SSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred             C----------CCcccceeE--CCCCc-EEEcc--CcEEEEeCCCCce-eccccccccCCccccCccceeeecCCCccee
Confidence            2          134778889  89998 55543  3499999987553 33333221                       


Q ss_pred             ---------------------------------------------CCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeE
Q 014154          259 ---------------------------------------------TPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKL  292 (430)
Q Consensus       259 ---------------------------------------------~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~  292 (430)
                                                                   ..+.+++|+| ++++++++  ++.|.+||+.+++.
T Consensus       210 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~  287 (349)
T 1jmx_B          210 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL  287 (349)
T ss_dssp             EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE
T ss_pred             EEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE
Confidence                                                         1345677889 99999988  88999999999998


Q ss_pred             EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee
Q 014154          293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK  342 (430)
Q Consensus       293 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  342 (430)
                      +..+...  ..+.+++|+|++++|++++.++.|++||+.+++.+..+.+.
T Consensus       288 ~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          288 IKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             EEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             EEEEcCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            8887753  45789999999998888888999999999999988886543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=1.2e-18  Score=158.23  Aligned_cols=278  Identities=10%  Similarity=0.037  Sum_probs=172.6

Q ss_pred             cCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeec---CCeEEEecCCCCcc--cceeeccC
Q 014154           21 DSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLNGDL--RVAISNAG   95 (430)
Q Consensus        21 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~---dg~i~iwd~~~~~~--~~~~~~~~   95 (430)
                      +.++.|.+|.+... .+....+.... +....  ..+.+  +|+|+ |++++.   ++.|.+|++.++..  +..+..+ 
T Consensus        13 ~~~~~i~v~~~d~~-tg~~~~~~~~~-~~~~p--~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~-   84 (347)
T 3hfq_A           13 KTSQGIYQGTLDTT-AKTLTNDGLLA-ATQNP--TYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAP-   84 (347)
T ss_dssp             SSCCEEEEEEEETT-TTEEEEEEEEE-ECSCC--CCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEE-
T ss_pred             CCCCCEEEEEEcCC-CCeEEEeeeee-ccCCc--ceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecC-
Confidence            44667888887652 12222222222 22332  33444  77888 555544   68999999976652  2221111 


Q ss_pred             CCCCCCCCCceEEEEEeecCcccccccCceEEEEc-cCCeeEEEEeeecCccccCCCcceEEeeec--------CCCceE
Q 014154           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVC--------ASGTIA  166 (430)
Q Consensus        96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--------~~~~i~  166 (430)
                             ...+..+.+.+..        ..++++. .++.+.+|++.....     ...+......        ....+.
T Consensus        85 -------~~~p~~~a~spdg--------~~l~~~~~~~~~v~v~~~~~~g~-----~~~~~~~~~~~~~p~~~~~~~~~~  144 (347)
T 3hfq_A           85 -------GTPPAYVAVDEAR--------QLVYSANYHKGTAEVMKIAADGA-----LTLTDTVQHSGHGPRPEQDGSHIH  144 (347)
T ss_dssp             -------SCCCSEEEEETTT--------TEEEEEETTTTEEEEEEECTTSC-----EEEEEEEECCCCCSSTTCSSCCEE
T ss_pred             -------CCCCEEEEECCCC--------CEEEEEeCCCCEEEEEEeCCCCC-----eeecceeecCCCCCCccccCCCce
Confidence                   1233345554433        3455555 678999999853211     0112222111        123488


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeE--eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE-EeCCCcEEEE
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLD-KCEKIW--TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA-GTNDHQVRLY  242 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~-~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iw  242 (430)
                      +++|+|+++++++...++.|.+|++. +++...  .+....        ...+..++|  +|++++|++ +..++.|.+|
T Consensus       145 ~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--------g~~p~~~~~--spdg~~l~v~~~~~~~v~v~  214 (347)
T 3hfq_A          145 YTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA--------GFGPRHLVF--SPDGQYAFLAGELSSQIASL  214 (347)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT--------TCCEEEEEE--CTTSSEEEEEETTTTEEEEE
T ss_pred             EEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC--------CCCCceEEE--CCCCCEEEEEeCCCCEEEEE
Confidence            89999999966666678899999998 444322  111111        134678899  899996655 5568899999


Q ss_pred             ECCC--CCc-ceEEEeecC------CCeEEEEecCCCCEEE-EEeCCCcEEEEEcc---CCeEEeeeeCCCCCCeEEEEe
Q 014154          243 DTSA--QRR-PVMSFDFRE------TPIKAVAEEPDSFNIY-IGNGSGDLASVDIR---TGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       243 d~~~--~~~-~~~~~~~~~------~~i~~~~~sp~~~~l~-~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~v~~i~~  309 (430)
                      ++..  +.. .+..+....      ..+..++|+|+|++|+ +...++.|.+||+.   ..+.+..+..+ ...+..++|
T Consensus       215 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~  293 (347)
T 3hfq_A          215 KYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDL  293 (347)
T ss_dssp             EEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEE
T ss_pred             EecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEE
Confidence            9874  221 122232222      3488899999999875 45568999999997   23556666665 567899999


Q ss_pred             cCCCCeEEEEeCC-CcEEEE--ECCCCceee
Q 014154          310 HPTLPIIASCGLD-SYLRFW--DIKTRQLLS  337 (430)
Q Consensus       310 ~~~~~~l~s~~~d-g~i~iw--d~~~~~~~~  337 (430)
                      +|+|++|++++.+ +.|.+|  |..++++..
T Consensus       294 spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          294 DPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            9999988888754 899999  556677654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=3.9e-20  Score=180.17  Aligned_cols=268  Identities=11%  Similarity=-0.018  Sum_probs=180.1

Q ss_pred             eeeeeecCCCCCceeEEeec-CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc-
Q 014154           54 VLAASIDDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-  131 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-  131 (430)
                      +.++.+  +|||++||+++. ||+++||++..++.. .+..+       +...+..+.|. .+        ..++++.. 
T Consensus        24 ~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~-------~~~~~~~~~~s-pd--------~~l~~~~~~   84 (582)
T 3o4h_A           24 KYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNRE-------PINSVLDPHYG-VG--------RVILVRDVS   84 (582)
T ss_dssp             EEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEE-ECCSS-------CCSEECEECTT-CS--------EEEEEEECS
T ss_pred             hheeec--CCCCCeEEEEEccCCceeEEEEcCCCcE-eeecc-------cccccccccCC-CC--------eEEEEeccC
Confidence            344444  678889999876 999999998655433 22221       01123323322 11        14444443 


Q ss_pred             --CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCC
Q 014154          132 --KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (430)
Q Consensus       132 --~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  208 (430)
                        +....+|.+....      ++....  +.....+...+|+|+++. +++.+.++.+.+||+.+++.......+     
T Consensus        85 ~g~~~~~l~~~~~~~------~g~~~~--l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-----  151 (582)
T 3o4h_A           85 KGAEQHALFKVNTSR------PGEEQR--LEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-----  151 (582)
T ss_dssp             TTSCCEEEEEEETTS------TTCCEE--CTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-----
T ss_pred             CCCcceEEEEEeccC------CCcccc--ccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-----
Confidence              3345677665310      111111  122233446677887753 333344445669999888765443221     


Q ss_pred             CCcCCcceeEEEEeecCCCCEEEEEeCC----CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC--cE
Q 014154          209 GIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DL  282 (430)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--~i  282 (430)
                           .  .+++|  +|||++|++++.+    +.|++||+.+++  ...+..|...+..++|||||++|+++..++  .|
T Consensus       152 -----~--~~~~~--spDG~~la~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i  220 (582)
T 3o4h_A          152 -----G--FGFVS--DIRGDLIAGLGFFGGGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMKVTAGLETAREARL  220 (582)
T ss_dssp             -----S--CEEEE--EEETTEEEEEEEEETTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEE
T ss_pred             -----C--ceEEE--CCCCCEEEEEEEcCCCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCCEEEEccCCCeeEE
Confidence                 2  66788  8999999988877    789999998765  457778888899999999999999888888  89


Q ss_pred             EEEEccCCeEEeeeeCCCCCCeEEEE--------ecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeec
Q 014154          283 ASVDIRTGKLLGCFIGKCSGSIRSIA--------RHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF  354 (430)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~i~--------~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  354 (430)
                      ++||+.+++.. .+.++ ...+..+.        |+|||.++++++.|+.+++|++  ++.+..     . ...+.+++|
T Consensus       221 ~~~d~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~-----~-~~~v~~~~~  290 (582)
T 3o4h_A          221 VTVDPRDGSVE-DLELP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA-----P-QGNHGRVVL  290 (582)
T ss_dssp             EEECTTTCCEE-ECCCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC-----C-SSEEEEEEE
T ss_pred             EEEcCCCCcEE-EccCC-CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc-----C-CCceEEEEe
Confidence            99999999887 66666 66677777        9999988999999999999999  665542     2 244689999


Q ss_pred             cccccc-cccCCC---CceEecCCC
Q 014154          355 ADKEVA-NAAADA---PMLEIQNGN  375 (430)
Q Consensus       355 s~~g~~-~~~~~d---~~i~~~~~~  375 (430)
                      + +|++ ++++.+   ..+.+|+..
T Consensus       291 s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          291 W-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             E-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             c-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            9 8887 555555   346666654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=5.3e-19  Score=176.26  Aligned_cols=281  Identities=12%  Similarity=0.046  Sum_probs=175.1

Q ss_pred             eeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC-----Ccccceee
Q 014154           18 LTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN-----GDLRVAIS   92 (430)
Q Consensus        18 ~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~-----~~~~~~~~   92 (430)
                      +....++.|++||+.++     +... +..+...+  ..+.|  +|||++|+++ .++.|.+||+.+     ++......
T Consensus        95 ~~~~~~~~i~~~d~~~~-----~~~~-l~~~~~~~--~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~  163 (706)
T 2z3z_A           95 VVLFTQGGLVGFDMLAR-----KVTY-LFDTNEET--ASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI  163 (706)
T ss_dssp             EEEEETTEEEEEETTTT-----EEEE-EECCTTCC--TTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS
T ss_pred             EEEEECCEEEEEECCCC-----ceEE-ccCCcccc--cCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc
Confidence            33335699999999886     4433 33344443  34455  8899999985 679999999987     66543322


Q ss_pred             ccCCCC------CCCCCCceEEEEEeecCcccccccCceEEEEcc---------------------------------CC
Q 014154           93 NAGDSG------AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT---------------------------------KG  133 (430)
Q Consensus        93 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~g  133 (430)
                      ......      .......+.++.|.+. .       ..++.++.                                 +.
T Consensus       164 ~~~~~~~~g~~~~~ee~~~~~~~~~SpD-g-------~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          164 DGTETLVYGQAVHQREFGIEKGTFWSPK-G-------SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             CCBTTEEESSCCGGGCTTCCCSEEECTT-S-------SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             CCCCCeEcccchhhhhcCCCceEEECCC-C-------CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence            210000      0000001122333332 2       34554441                                 22


Q ss_pred             eeEEEEeeecCccccCCCcceEEee-ecCCCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCC
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNS  207 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~  207 (430)
                      .+.+|++....        ...+.. ..+...+..++|+|++++|++++.++     .|++||+.+++....+.......
T Consensus       236 ~l~~~d~~~~~--------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~  307 (706)
T 2z3z_A          236 TVGIYHLATGK--------TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH  307 (706)
T ss_dssp             EEEEEETTTTE--------EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred             EEEEEECCCCc--------eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence            34444432111        111110 12345688999999999999988775     89999999883332222110000


Q ss_pred             CCCcCCcceeEEEEeecC--CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEE-EEecCCCCEEEEEeCC-C---
Q 014154          208 LGIFTPTWFTSAAFLSID--DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGS-G---  280 (430)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~d-~---  280 (430)
                          ....+..++|  +|  ++++|+++..++.++||++......+..+..|...+.. ++|+|+++.|+.++.+ +   
T Consensus       308 ----~~~~~~~~~~--sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~  381 (706)
T 2z3z_A          308 ----YVEPLHPLTF--LPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLE  381 (706)
T ss_dssp             ----CCCCCSCCEE--CTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred             ----eECccCCcee--ecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCce
Confidence                0012467789  88  99999999999999999876323346677777777876 7999999888766554 3   


Q ss_pred             -cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC----CcEEEEECCCCc
Q 014154          281 -DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTRQ  334 (430)
Q Consensus       281 -~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~i~iwd~~~~~  334 (430)
                       .|..||+.+++. ..+. + ...+.+++|+|+|++|+....+    +.|++||+.+++
T Consensus       382 ~~l~~~d~~~~~~-~~l~-~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          382 RHFYCIDIKGGKT-KDLT-P-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             BEEEEEETTCCCC-EESC-C-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEEEEEcCCCCc-eecc-C-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence             677778877663 3343 3 5678999999999988776443    569999998877

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=2e-18  Score=156.94  Aligned_cols=228  Identities=10%  Similarity=0.022  Sum_probs=169.3

Q ss_pred             CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (430)
Q Consensus       132 ~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  210 (430)
                      ++.+.+|+.....        .+..+..  ...+..++++|++++++++ ..++.|.+||+.+++.+..+..+.......
T Consensus        68 ~~~v~~~d~~~~~--------~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  137 (353)
T 3vgz_A           68 GGVVYRLDPVTLE--------VTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEE  137 (353)
T ss_dssp             SEEEEEECTTTCC--------EEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSS
T ss_pred             CccEEEEcCCCCe--------EEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccc
Confidence            4567777653221        3344433  4557889999999966555 557899999999998877765543211111


Q ss_pred             cCCcceeEEEEeecCCCCEEEEEe--CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154          211 FTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (430)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~  288 (430)
                      ..+..+.+++|  +|+++++++++  .++.|.+||+.+++ .+..+..+...+.+++|+|++++|++++.++.|.+||+.
T Consensus       138 ~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~  214 (353)
T 3vgz_A          138 VRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIK-LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTA  214 (353)
T ss_dssp             CCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTE-EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT
T ss_pred             cCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCc-eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECC
Confidence            11223678899  88998877766  47889999999865 466666555668899999999999999999999999999


Q ss_pred             CCeEEeeeeCC---CCCCeEEEEecCCCCeEEEEeC-CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cc
Q 014154          289 TGKLLGCFIGK---CSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NA  362 (430)
Q Consensus       289 ~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~  362 (430)
                      +++.+..+...   +...+..++|+|++++|++++. ++.|.+||+.+++.+..+....    . ..++|+|+|+.  ++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~-~~~~~s~dg~~l~v~  289 (353)
T 3vgz_A          215 DNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----S-LAVLFNPARNEAYVT  289 (353)
T ss_dssp             TTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----C-CCEEEETTTTEEEEE
T ss_pred             CCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----C-ceEEECCCCCEEEEE
Confidence            99988777641   1456788999999997776664 4899999999999888754321    1 57899999985  55


Q ss_pred             cCCCCceEecCCCCC
Q 014154          363 AADAPMLEIQNGNDT  377 (430)
Q Consensus       363 ~~~d~~i~~~~~~~~  377 (430)
                      ...++.|.+|+....
T Consensus       290 ~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          290 HRQAGKVSVIDAKSY  304 (353)
T ss_dssp             ETTTTEEEEEETTTT
T ss_pred             ECCCCeEEEEECCCC
Confidence            667899999998654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=3.5e-19  Score=157.51  Aligned_cols=219  Identities=7%  Similarity=-0.014  Sum_probs=157.2

Q ss_pred             ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEeeCCCCCCCC
Q 014154          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSL  208 (430)
Q Consensus       130 ~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~  208 (430)
                      ..++.+.+|++...         .+... ..+...+.+++|+|++++|++++ ++.|++||+.+ ++.......+.    
T Consensus        19 ~~~~~i~~~d~~~~---------~~~~~-~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~----   83 (297)
T 2ojh_A           19 SMRSSIEIFNIRTR---------KMRVV-WQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA----   83 (297)
T ss_dssp             CCCEEEEEEETTTT---------EEEEE-EEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC----
T ss_pred             CcceeEEEEeCCCC---------ceeee-ccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc----
Confidence            45667788876422         22222 23567899999999999999876 77999999988 76654443321    


Q ss_pred             CCcCCcceeEEEEeecCCCCEEEEEe--CCCcEEEE--ECCCCCcceEEEeecCCCeEEEEecCCCCEEE-EEeCCCcEE
Q 014154          209 GIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQVRLY--DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIY-IGNGSGDLA  283 (430)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~iw--d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~-~~~~d~~i~  283 (430)
                          ...+.+++|  +|++++|++++  .++.+.||  ++.++.  ...+..+ ..+..++|+|++++|+ ++..++.++
T Consensus        84 ----~~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~  154 (297)
T 2ojh_A           84 ----TICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGT--PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFD  154 (297)
T ss_dssp             ----CCBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCC--CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred             ----cccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCc--eEEeecC-CCccceEECCCCCEEEEEECCCCceE
Confidence                145788999  89999999998  33455555  444433  4445444 3589999999999887 777899999


Q ss_pred             EEEcc--CCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECC-CCceeeEEEeeccccceEEeeecccccc
Q 014154          284 SVDIR--TGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEV  359 (430)
Q Consensus       284 iwd~~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~  359 (430)
                      +|++.  +++ ...+..+ ...+.++.|+|++++|+.++ .++.++||++. .+..+..  +..+ ...+..++|+|+|+
T Consensus       155 l~~~~~~~~~-~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~--~~~~-~~~~~~~~~s~dg~  229 (297)
T 2ojh_A          155 IYSMDIDSGV-ETRLTHG-EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVER--ITDS-AYGDWFPHPSPSGD  229 (297)
T ss_dssp             EEEEETTTCC-EEECCCS-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEE--CCCC-SEEEEEEEECTTSS
T ss_pred             EEEEECCCCc-ceEcccC-CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEE--EecC-CcccCCeEECCCCC
Confidence            99864  343 3455555 67899999999999887766 58999999886 4444544  4444 45578999999999


Q ss_pred             c-cccCCC-----------CceEecCCCCC
Q 014154          360 A-NAAADA-----------PMLEIQNGNDT  377 (430)
Q Consensus       360 ~-~~~~~d-----------~~i~~~~~~~~  377 (430)
                      + ++++.+           +.|.+|+....
T Consensus       230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~  259 (297)
T 2ojh_A          230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGG  259 (297)
T ss_dssp             EEEEEEEETTCCSCCSSEEEEEEEEETTSC
T ss_pred             EEEEEEcCCCCCcccccCceEEEEEecCCC
Confidence            7 555554           56899987653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=2.4e-19  Score=167.30  Aligned_cols=196  Identities=7%  Similarity=-0.021  Sum_probs=141.1

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCC--cceEE----eeecCCCceEEEEEcCCCCEEE----EEeCCCeEEEEECCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSC--STVKS----WNVCASGTIAFSKVDISEKFSL----FGGKGVEVNVWDLDK  193 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~i~~----~~~~~~~~i~~~~~~~~~~~l~----~~~~d~~i~~~d~~~  193 (430)
                      +.+++++.++ +.||............+  ..+..    ..+.+...|.+++|+|++++|+    +++.|+.|++||+.+
T Consensus        49 ~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~  127 (434)
T 2oit_A           49 GLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRT  127 (434)
T ss_dssp             TEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccc
Confidence            4777777666 77776432111000000  11111    1123456799999999999999    788899999999865


Q ss_pred             C--------ee---eEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCe
Q 014154          194 C--------EK---IWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPI  261 (430)
Q Consensus       194 ~--------~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i  261 (430)
                      +        +.   +..+..         |...|.+++|  +|+ +.+|++++.||+|++||++++. .+.....|...|
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~---------h~~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~~~~~~~v  195 (434)
T 2oit_A          128 FSNEAKQQKRPFAYHKLLKD---------AGGMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETV-KVCATLPSTVAV  195 (434)
T ss_dssp             HHCTTCSSCCCSEEEECCCS---------GGGSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSE-EEEEEECGGGCE
T ss_pred             cccCCcCCcceeeeeeccCC---------CCCceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCc-ceeeccCCCCce
Confidence            4        11   122222         3478999999  776 7899999999999999999864 355566788899


Q ss_pred             EEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC------CCCCeEEEEecCCCCeEEEE-eCCC------cEEEE
Q 014154          262 KAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------CSGSIRSIARHPTLPIIASC-GLDS------YLRFW  328 (430)
Q Consensus       262 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~v~~i~~~~~~~~l~s~-~~dg------~i~iw  328 (430)
                      .+++|+|+|++|++|+.||.|++||++ ++....+..+      |...|.++.|++++.++++. +.||      .+++|
T Consensus       196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~  274 (434)
T 2oit_A          196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA  274 (434)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence            999999999999999999999999998 5555555443      12379999999988777543 3443      38999


Q ss_pred             ECCCC
Q 014154          329 DIKTR  333 (430)
Q Consensus       329 d~~~~  333 (430)
                      ++.+.
T Consensus       275 ~l~~~  279 (434)
T 2oit_A          275 LLPKK  279 (434)
T ss_dssp             ECCCT
T ss_pred             EeccC
Confidence            99865

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.84  E-value=2e-18  Score=155.59  Aligned_cols=226  Identities=8%  Similarity=0.008  Sum_probs=162.4

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCee-eEeeC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEK-IWTAK  201 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~-~~~~~  201 (430)
                      ..+++...++.+.+|++....        .+...... ...+ .++|+|+++++++++. ++.|.+||+.+++. ...+.
T Consensus        11 ~~~v~~~~~~~v~~~d~~~~~--------~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~   80 (331)
T 3u4y_A           11 FGIVVEQHLRRISFFSTDTLE--------ILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ   80 (331)
T ss_dssp             EEEEEEGGGTEEEEEETTTCC--------EEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE
T ss_pred             EEEEEecCCCeEEEEeCcccc--------eeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc
Confidence            357788889999999875332        34444432 4455 9999999997777665 88999999998876 54444


Q ss_pred             CCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC---cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-e
Q 014154          202 PPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH---QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-N  277 (430)
Q Consensus       202 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~  277 (430)
                      .+.         ....+++|  +|++++|+++..++   .|.+||+.+++ .+..+..+ ....+++|+|+|++|+++ .
T Consensus        81 ~~~---------~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~-~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           81 EGQ---------SSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIPIP-YDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             ECS---------SCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEECC-TTEEEEEECTTSSCEEEEEE
T ss_pred             cCC---------CCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEECC-CCccceEECCCCCEEEEEec
Confidence            332         23334888  89999998555553   89999999865 35555543 567999999999866655 5


Q ss_pred             CCCc-EEEEEccCCeEE----eeeeCCCCCCeEEEEecCCCCeEEEE-eCCCcEEEEECCCCce---eeEEEeeccccce
Q 014154          278 GSGD-LASVDIRTGKLL----GCFIGKCSGSIRSIARHPTLPIIASC-GLDSYLRFWDIKTRQL---LSAVFLKQHLNEV  348 (430)
Q Consensus       278 ~d~~-i~iwd~~~~~~~----~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~  348 (430)
                      .++. |.+|++.....+    ...... ...+..++|+|+|++|+.+ ..++.|++||+.+++.   +..+.  .+  ..
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~--~~  222 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFISG-GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TN--NL  222 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEECS-SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CS--SC
T ss_pred             CCCceEEEEEECCCCcEeecCCccccC-CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CC--CC
Confidence            5588 999998754322    111122 4568999999999966554 4689999999999988   66542  22  33


Q ss_pred             EEeeeccccccc--cccCCCCceEecCCCCC
Q 014154          349 VFDSAFADKEVA--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       349 v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~  377 (430)
                      +..++|+|||++  ++...++.|.+|+....
T Consensus       223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             CCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            578999999995  45556888999998653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=1.8e-17  Score=150.50  Aligned_cols=238  Identities=13%  Similarity=0.116  Sum_probs=154.2

Q ss_pred             eEEEEcc---CCeeEEEEeeecCccccCCCcceEEee--ecCCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCC-C--e
Q 014154          125 TLLTCTT---KGKASMRSIEVTKVSAESSCSTVKSWN--VCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDK-C--E  195 (430)
Q Consensus       125 ~~~~~~~---~g~~~v~~~~~~~~~~~~~~~~i~~~~--~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~--~  195 (430)
                      .+++++.   ++.+.+|++...         ..+...  ..+...+..++|+|++++|++++ .++.|.+|++.. +  .
T Consensus        52 ~l~~~~~~~~~~~v~~~~~~~g---------~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~  122 (347)
T 3hfq_A           52 CLYSVDKEDDEGGIAAWQIDGQ---------TAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT  122 (347)
T ss_dssp             EEEEEEEETTEEEEEEEEEETT---------EEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             eEEEEEecCCCceEEEEEecCC---------cEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence            3555544   578888887422         222221  12456788999999999998887 678999999963 2  2


Q ss_pred             eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce--EEEeec-CCCeEEEEecCCCCE
Q 014154          196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV--MSFDFR-ETPIKAVAEEPDSFN  272 (430)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~-~~~i~~~~~sp~~~~  272 (430)
                      .+..+...............+.+++|  +|+++++++...++.|.+|++.......  ..+..+ ...+..++|+|+|++
T Consensus       123 ~~~~~~~~~~~p~~~~~~~~~~~~~~--spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~  200 (347)
T 3hfq_A          123 LTDTVQHSGHGPRPEQDGSHIHYTDL--TPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY  200 (347)
T ss_dssp             EEEEEECCCCCSSTTCSSCCEEEEEE--CTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             ecceeecCCCCCCccccCCCceEEEE--CCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE
Confidence            23322211100000011245788999  8999966666678899999998322212  222222 336788999999997


Q ss_pred             EEEE-eCCCcEEEEEccC--CeE--EeeeeCCCC-----CCeEEEEecCCCCeE-EEEeCCCcEEEEECCC-C--ceeeE
Q 014154          273 IYIG-NGSGDLASVDIRT--GKL--LGCFIGKCS-----GSIRSIARHPTLPII-ASCGLDSYLRFWDIKT-R--QLLSA  338 (430)
Q Consensus       273 l~~~-~~d~~i~iwd~~~--~~~--~~~~~~~~~-----~~v~~i~~~~~~~~l-~s~~~dg~i~iwd~~~-~--~~~~~  338 (430)
                      |+++ ..++.|.+|++..  ++.  +..+.....     ..+..++|+|+|++| ++...++.|.+|++.. +  +.+..
T Consensus       201 l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~  280 (347)
T 3hfq_A          201 AFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ  280 (347)
T ss_dssp             EEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence            6664 5678999999874  553  333333211     358899999999977 5556789999999973 3  23333


Q ss_pred             EEeeccccceEEeeeccccccc-ccc-CCCCceEecCCCC
Q 014154          339 VFLKQHLNEVVFDSAFADKEVA-NAA-ADAPMLEIQNGND  376 (430)
Q Consensus       339 ~~~~~~~~~~v~~~~~s~~g~~-~~~-~~d~~i~~~~~~~  376 (430)
                        +..+ ...+..++|+|||++ +++ ..++.+.+|+.+.
T Consensus       281 --~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          281 --ISTE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             --EECS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             --EecC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence              3333 233578999999986 444 4568999996643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=3.2e-18  Score=155.36  Aligned_cols=231  Identities=16%  Similarity=0.174  Sum_probs=166.7

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEeeCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~  202 (430)
                      ..++++..++.+.+|++....        .+..+.......+..++|+|+++++++ ...++.|.+||+.+++....+..
T Consensus        12 ~~~v~~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B           12 EYMIVTNYPNNLHVVDVASDT--------VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             EEEEEEETTTEEEEEETTTTE--------EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             EEEEEeCCCCeEEEEECCCCc--------EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            467788889999999875322        344444332225788999999987654 45688999999999888766543


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC------------CcEEEEECCCCCc--ceEEEeecCCCeEEEEecC
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------------HQVRLYDTSAQRR--PVMSFDFRETPIKAVAEEP  268 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------------g~i~iwd~~~~~~--~~~~~~~~~~~i~~~~~sp  268 (430)
                      .....   .....+..++|  +|++++|++++.+            +.|.+||+.+++.  .+..+..+ ..+.+++|+|
T Consensus        84 ~~~~~---~~~~~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~  157 (349)
T 1jmx_B           84 SSVPG---EVGRSMYSFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAAD  157 (349)
T ss_dssp             CCSTT---EEEECSSCEEE--CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECT
T ss_pred             ccccc---cccccccceEE--CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECC
Confidence            21000   00123678889  8999999998865            8999999987432  23344433 4688999999


Q ss_pred             CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC------------------------------------------------
Q 014154          269 DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC------------------------------------------------  300 (430)
Q Consensus       269 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------  300 (430)
                      +++ +++++  +.|.+||+.+++.+..+..+.                                                
T Consensus       158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            999 66654  349999999988776665321                                                


Q ss_pred             -------------------CCCeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          301 -------------------SGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       301 -------------------~~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                                         ...+..++|+| ++++|+++  ++.|.+||+.+++.+..+...    ..+.+++|+|+|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~  308 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD----HTYYCVAFDKKGDK  308 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS----SCCCEEEECSSSSC
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC----CCccceEECCCCCE
Confidence                               01345677889 99998888  889999999999988775322    22578999999987


Q ss_pred             -cccCCCCceEecCCCCC
Q 014154          361 -NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       361 -~~~~~d~~i~~~~~~~~  377 (430)
                       ++++.++.|.+|+....
T Consensus       309 l~~~~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          309 LYLGGTFNDLAVFNPDTL  326 (349)
T ss_dssp             EEEESBSSEEEEEETTTT
T ss_pred             EEEecCCCeEEEEecccc
Confidence             66778899999998764

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=5.3e-19  Score=176.61  Aligned_cols=325  Identities=10%  Similarity=0.023  Sum_probs=195.1

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC-cceeeeeecCCCCCceeEEeec---------CCeEEEecCC
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-NCVLAASIDDSQNDPLLAVARK---------NGLTDILNPL   83 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~g~~l~~g~~---------dg~i~iwd~~   83 (430)
                      ...++..+.||.|++||+.++     +....+..+... ..+..+.+  +|||++|++++.         ++.|++||+.
T Consensus        26 dg~~~~~~~d~~i~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           26 GQEYLHQSADNNIVLYNIETG-----QSYTILSNRTMKSVNASNYGL--SPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             SSEEEEECTTSCEEEEESSSC-----CEEEEECHHHHHTTTCSEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             CCeEEEEcCCCCEEEEEcCCC-----cEEEEEccccccccceeeEEE--CCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            346677778999999999987     444444433220 11345555  889999999876         7899999998


Q ss_pred             CCccc--ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCc-ceEEeeec
Q 014154           84 NGDLR--VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCS-TVKSWNVC  160 (430)
Q Consensus        84 ~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~-~i~~~~~~  160 (430)
                      +++.+  ..+.           ..+..+.|.+..        ..++.+ .++.+.+|++.......-..++ ...++. .
T Consensus        99 ~g~~~~~~~l~-----------~~~~~~~~SPDG--------~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~-g  157 (719)
T 1z68_A           99 NGEFVRGNELP-----------RPIQYLCWSPVG--------SKLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFN-G  157 (719)
T ss_dssp             TTEECCSSCCC-----------SSBCCEEECSST--------TCEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEE-S
T ss_pred             CCccccceecC-----------cccccceECCCC--------CEEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEc-c
Confidence            88752  1111           133334444332        244444 5778999987533210000000 000111 1


Q ss_pred             CC---------CceEEEEEcCCCCEEEEEeCCC----------------------------------eEEEEECCCCeee
Q 014154          161 AS---------GTIAFSKVDISEKFSLFGGKGV----------------------------------EVNVWDLDKCEKI  197 (430)
Q Consensus       161 ~~---------~~i~~~~~~~~~~~l~~~~~d~----------------------------------~i~~~d~~~~~~~  197 (430)
                      +.         ....+++|+|+|++|++++.|.                                  .|++||+.+++..
T Consensus       158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~  237 (719)
T 1z68_A          158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYV  237 (719)
T ss_dssp             SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHH
T ss_pred             cccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCcc
Confidence            11         1125899999999999987652                                  7889999887642


Q ss_pred             --EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----CcEEEEE----CCCCCcceEEE----eecCCCeE-
Q 014154          198 --WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYD----TSAQRRPVMSF----DFRETPIK-  262 (430)
Q Consensus       198 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd----~~~~~~~~~~~----~~~~~~i~-  262 (430)
                        ..+....  . ...+...+..++|  +||+.++++....    ..|.+||    +.+++. ...+    ..|...+. 
T Consensus       238 ~~~~~~~~~--~-~~~~~~~~~~~~~--SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~-~~~~~~~~~~~~~~~~~  311 (719)
T 1z68_A          238 GPQEVPVPA--M-IASSDYYFSWLTW--VTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC-PKTQEHIEESRTGWAGG  311 (719)
T ss_dssp             CCEECCCCH--H-HHTSCEEEEEEEE--SSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC-CGGGEEEEECSSSCSSS
T ss_pred             ceeEccCCc--c-CCCCcceEEEeEE--eCCCeEEEEEeccccCeEEEEEEcccCCCCCCce-EEEEecccccCCceEcc
Confidence              1211100  0 0012367899999  8998777775433    2488999    766442 2222    45666666 


Q ss_pred             ----EEEecCCCCEEEE--EeCCC--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC-----CcEEEEE
Q 014154          263 ----AVAEEPDSFNIYI--GNGSG--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWD  329 (430)
Q Consensus       263 ----~~~~sp~~~~l~~--~~~d~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~i~iwd  329 (430)
                          .+.|+|||+.|+.  +..++  .|.+||+.+++ ...+..+ ...+..+.++ ++..|+..+.+     +.+++|.
T Consensus       312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~  388 (719)
T 1z68_A          312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR  388 (719)
T ss_dssp             SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred             ccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence                8899999986654  43455  57777887766 3455554 5567887777 77777666654     7888888


Q ss_pred             CCC--Cce-eeEEE--eeccccceEEeeeccccccc-c-ccCCC--CceEecCCCC
Q 014154          330 IKT--RQL-LSAVF--LKQHLNEVVFDSAFADKEVA-N-AAADA--PMLEIQNGND  376 (430)
Q Consensus       330 ~~~--~~~-~~~~~--~~~~~~~~v~~~~~s~~g~~-~-~~~~d--~~i~~~~~~~  376 (430)
                      +..  +.. ...+.  +.++ ...+..+.|+|+++. + ..+.+  ..+.+|+...
T Consensus       389 ~~~~~g~~~~~~l~~~~~~~-~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~  443 (719)
T 1z68_A          389 ISIGSYPPSKKCVTCHLRKE-RCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRT  443 (719)
T ss_dssp             EECSSSSCCEEESSTTTTTT-TBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSS
T ss_pred             EeCCCCCCCceeccCccCCC-CCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCC
Confidence            753  421 22211  1112 234578999999987 3 23333  4677787643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=1.1e-16  Score=146.00  Aligned_cols=238  Identities=10%  Similarity=0.063  Sum_probs=153.6

Q ss_pred             eEEEEccC----CeeEEEEeeecCccccCCCcceEEe-eec-CCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeee
Q 014154          125 TLLTCTTK----GKASMRSIEVTKVSAESSCSTVKSW-NVC-ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKI  197 (430)
Q Consensus       125 ~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~i~~~-~~~-~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~  197 (430)
                      .+++++.+    +.+.+|.+....       +.+... ... +......+++  ++++|+++. .++.|.+|++.....+
T Consensus        63 ~l~~~~~~~~~~~~v~~~~~~~~~-------g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~  133 (361)
T 3scy_A           63 FVYSVNEFSKDQAAVSAFAFDKEK-------GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGAL  133 (361)
T ss_dssp             EEEEEECCSSTTCEEEEEEEETTT-------TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCB
T ss_pred             EEEEEEccCCCCCcEEEEEEeCCC-------CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcC
Confidence            56666654    788999886321       233222 222 3456677777  778777766 5789999999754332


Q ss_pred             Eee------CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCc------ce------EEEeecC
Q 014154          198 WTA------KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRR------PV------MSFDFRE  258 (430)
Q Consensus       198 ~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------~~------~~~~~~~  258 (430)
                      ...      ...... ....+...+.+++|  +|++++|++++ .++.|.+|++.....      ..      .....+.
T Consensus       134 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~--spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  210 (361)
T 3scy_A          134 LPASDVIEFKGSGPD-KERQTMPHLHCVRI--TPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG  210 (361)
T ss_dssp             CSCSEEEECCCCCSC-TTTCSSCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT
T ss_pred             cccceeEEccCCCCC-ccccCCCcceEEEE--CCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC
Confidence            211      111000 00011234678999  89999766655 488999999875431      11      1122234


Q ss_pred             CCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeE--EeeeeCC--CCCCeEEEEecCCCCeEEEEeCC--CcEEEEECC
Q 014154          259 TPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKL--LGCFIGK--CSGSIRSIARHPTLPIIASCGLD--SYLRFWDIK  331 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~--~~~~~~~--~~~~v~~i~~~~~~~~l~s~~~d--g~i~iwd~~  331 (430)
                      ..+..++|+|+|++|++++ .++.|.+||+.+++.  +..+...  +...+..++|+|+|++|+++..+  +.|.+|++.
T Consensus       211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            5678999999999888877 689999999998765  3333221  13457899999999988776654  899999995


Q ss_pred             --CCceeeEEEeeccccceEEeeeccccccc-ccc-CCCCceEecCCCC
Q 014154          332 --TRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAA-ADAPMLEIQNGND  376 (430)
Q Consensus       332 --~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~-~~d~~i~~~~~~~  376 (430)
                        +++......+..  ...+.+++|+|||++ +++ ..++.|.+|..+.
T Consensus       291 ~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          291 ETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             TTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence              455332211222  334578999999997 444 4789999987654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=7.3e-17  Score=147.54  Aligned_cols=284  Identities=12%  Similarity=0.024  Sum_probs=171.7

Q ss_pred             cceeeecCC--CceEEEEccCCCCCcceeeeecC-CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC-CCcccce
Q 014154           15 LRALTFDSL--GLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL-NGDLRVA   90 (430)
Q Consensus        15 ~~l~t~~~d--g~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~-~~~~~~~   90 (430)
                      .+++.|+..  +.|.+|++... .+....+.... .....  ...+.+  +|+|++|++++.+ .|.+|++. +++....
T Consensus         3 ~~~~vg~~~~~~~i~~~~~d~~-~g~l~~~~~~~~~~~~~--~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~   76 (365)
T 1jof_A            3 HHLMIGTWTPPGAIFTVQFDDE-KLTCKLIKRTEIPQDEP--ISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHE   76 (365)
T ss_dssp             EEEEEEESSSSCEEEEEEEETT-TTEEEEEEEEECCTTCC--CSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEE
T ss_pred             EEEEEEEccCCCcEEEEEEECC-CCCEEEeeEEccCCCCC--CcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEe
Confidence            345666543  56888876432 12222222221 12223  334455  7889999998887 99999997 6765432


Q ss_pred             eeccCCCCCCCCCCceEEEEEeecCcccccccCce--EEEEc-------------cCCeeEEEEeeecCccccCCCcceE
Q 014154           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT--LLTCT-------------TKGKASMRSIEVTKVSAESSCSTVK  155 (430)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~g~~~v~~~~~~~~~~~~~~~~i~  155 (430)
                      ......       .....+.+ ..+.       ..  ++++.             .++.+.+|.+.....    ....+.
T Consensus        77 ~~~~~~-------g~~~~~~~-spdg-------~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~----~~~~~~  137 (365)
T 1jof_A           77 ASHPIG-------GHPRANDA-DTNT-------RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK----LEKNVQ  137 (365)
T ss_dssp             EEEECC-------SSGGGGCT-TSCC-------EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC----EEEEEE
T ss_pred             eEeecC-------CCCccEEE-CCCC-------CEEEEEEecCCcceeccceeecCCceEEEEccCCCCc----CcceEe
Confidence            221000       00000111 1111       11  22332             577889998752110    001223


Q ss_pred             EeeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECC-CCeee--EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          156 SWNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLD-KCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~-~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      .+...+...+.+++|+|++++|+++.. ++.|++|++. +++..  ..+....       +...+..++|  +|++++|+
T Consensus       138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-------~g~~p~~~~~--spdg~~l~  208 (365)
T 1jof_A          138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------PGDHPRWVAM--HPTGNYLY  208 (365)
T ss_dssp             EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------TTCCEEEEEE--CTTSSEEE
T ss_pred             eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-------CCCCCCEeEE--CCCCCEEE
Confidence            332234567999999999998887764 6799999998 66543  2221100       0145788999  89999988


Q ss_pred             EEeC-CCcEEEEECC--CCCcc--eEEEee-------cCC------CeEEEE-ecCCCCEEEEEeCC-C-----cEEEEE
Q 014154          232 AGTN-DHQVRLYDTS--AQRRP--VMSFDF-------RET------PIKAVA-EEPDSFNIYIGNGS-G-----DLASVD  286 (430)
Q Consensus       232 s~~~-dg~i~iwd~~--~~~~~--~~~~~~-------~~~------~i~~~~-~sp~~~~l~~~~~d-~-----~i~iwd  286 (430)
                      +++. ++.|.+|++.  +++..  ...+..       |..      .+..++ |+|||++|+++..+ +     .|.+|+
T Consensus       209 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~  288 (365)
T 1jof_A          209 ALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFK  288 (365)
T ss_dssp             EEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEE
T ss_pred             EEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEE
Confidence            8775 6899999875  33321  112221       121      478999 99999998877643 2     899999


Q ss_pred             cc-CCeEEe---eeeCCCCCCeEEEEecC---CCCeEEEEeCC-CcEEEEECCCC
Q 014154          287 IR-TGKLLG---CFIGKCSGSIRSIARHP---TLPIIASCGLD-SYLRFWDIKTR  333 (430)
Q Consensus       287 ~~-~~~~~~---~~~~~~~~~v~~i~~~~---~~~~l~s~~~d-g~i~iwd~~~~  333 (430)
                      +. +++...   .+..+ ...+..++|+|   +|++|++++.+ +.|.+|++...
T Consensus       289 ~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          289 LRDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ECTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ECCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            96 666543   23333 44567889999   89999999864 89999998765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=4.7e-18  Score=165.49  Aligned_cols=257  Identities=12%  Similarity=0.034  Sum_probs=173.8

Q ss_pred             cceeeecC-CCceEEEEccCCCCCcceeeeecCCCC-CCcceeeeeecCCCCCceeEEeec---CCeEEEecCCC---Cc
Q 014154           15 LRALTFDS-LGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARK---NGLTDILNPLN---GD   86 (430)
Q Consensus        15 ~~l~t~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~g~~l~~g~~---dg~i~iwd~~~---~~   86 (430)
                      .+++.++. ||+++||++.++     +.. .+..+. ..  +....|  +|| +++++++.   +....||.+..   +.
T Consensus        34 ~~la~~s~~~g~~~lw~~~~g-----~~~-~lt~~~~~~--~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~  102 (582)
T 3o4h_A           34 DKLLVVGFSEGSVNAYLYDGG-----ETV-KLNREPINS--VLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGE  102 (582)
T ss_dssp             TEEEEEEEETTEEEEEEEETT-----EEE-ECCSSCCSE--ECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTC
T ss_pred             CeEEEEEccCCceeEEEEcCC-----CcE-eeecccccc--cccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCc
Confidence            34666555 999999999775     333 344443 34  344455  677 77777664   45566765533   22


Q ss_pred             ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (430)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~  166 (430)
                      .. .+...         .......+.+...       ..+++....+...+|++....        ..++... . .  .
T Consensus       103 ~~-~l~~~---------~~~~~~~~s~dg~-------~~~~~s~~~~~~~l~d~~~g~--------~~~l~~~-~-~--~  153 (582)
T 3o4h_A          103 EQ-RLEAV---------KPMRILSGVDTGE-------AVVFTGATEDRVALYALDGGG--------LRELARL-P-G--F  153 (582)
T ss_dssp             CE-ECTTS---------CSBEEEEEEECSS-------CEEEEEECSSCEEEEEEETTE--------EEEEEEE-S-S--C
T ss_pred             cc-cccCC---------CCceeeeeCCCCC-------eEEEEecCCCCceEEEccCCc--------EEEeecC-C-C--c
Confidence            11 22110         1222234433332       344555555555599875332        2233321 1 2  7


Q ss_pred             EEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC--cEE
Q 014154          167 FSKVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVR  240 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~  240 (430)
                      +++|+|+|++|++++.+    +.|++||+.+++.. .+..+.         ..+..++|  +|||+.|+++..++  .|+
T Consensus       154 ~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~---------~~~~~~~~--SpDG~~l~~~~~~~~~~i~  221 (582)
T 3o4h_A          154 GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGE---------GSFSSASI--SPGMKVTAGLETAREARLV  221 (582)
T ss_dssp             EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSS---------CEEEEEEE--CTTSCEEEEEECSSCEEEE
T ss_pred             eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCC---------CccccceE--CCCCCEEEEccCCCeeEEE
Confidence            89999999999988877    78999999887654 444432         56789999  99999999888888  899


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEE--------ecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVA--------EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~--------~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      +||+.+++. . .+..|...+..++        |+|||.++++++.++.+++|++  ++.+.   .. ...+.+++|+ +
T Consensus       222 ~~d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~-~~~v~~~~~s-d  292 (582)
T 3o4h_A          222 TVDPRDGSV-E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP-QGNHGRVVLW-R  292 (582)
T ss_dssp             EECTTTCCE-E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC-SSEEEEEEEE-T
T ss_pred             EEcCCCCcE-E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC-CCceEEEEec-C
Confidence            999998653 4 6667777777777        9999988899999999999999  76654   22 4678999999 9


Q ss_pred             CCeEEEEeCCC---cEEEEECCC
Q 014154          313 LPIIASCGLDS---YLRFWDIKT  332 (430)
Q Consensus       313 ~~~l~s~~~dg---~i~iwd~~~  332 (430)
                      ++++++++.+.   .+++||..+
T Consensus       293 g~~l~~~s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          293 GKLVTSHTSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             TEEEEEEEETTEEEEEEEETTCC
T ss_pred             CEEEEEEcCCCCCCeEEEEcCCC
Confidence            99988888774   477777653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=1.3e-16  Score=145.87  Aligned_cols=236  Identities=12%  Similarity=0.018  Sum_probs=152.8

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE--EEEEe-------------CCCeEEEE
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF--SLFGG-------------KGVEVNVW  189 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~--l~~~~-------------~d~~i~~~  189 (430)
                      .++++..+ .+.+|++....       ....+......+....++|+|++++  ++++.             .++.+.+|
T Consensus        53 ~l~~~~~~-~v~~~~~~~~g-------~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~  124 (365)
T 1jof_A           53 NIYGAAMK-KWSSFAVKSPT-------EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVF  124 (365)
T ss_dssp             EEEEEEBT-EEEEEEEEETT-------EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEE
T ss_pred             EEEEEccc-eEEEEEECCCC-------CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEE
Confidence            56666666 89999875211       1222222221233556889999994  44553             68899999


Q ss_pred             ECC-CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECC-CCCcc-eEEEe--ecCCCeEE
Q 014154          190 DLD-KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTS-AQRRP-VMSFD--FRETPIKA  263 (430)
Q Consensus       190 d~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~-~~~~~-~~~~~--~~~~~i~~  263 (430)
                      ++. +++....+.....     .+...+.+++|  +|+|++|+++.. ++.|++||+. +++.. +..+.  .|...+..
T Consensus       125 ~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~--spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          125 SVSETGKLEKNVQNYEY-----QENTGIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             EECTTCCEEEEEEEEEC-----CTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             ccCCCCcCcceEeeEEe-----CCCCcceEEEE--CCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            997 4544332221000     01145888999  899998887664 6799999998 55421 22333  23567899


Q ss_pred             EEecCCCCEEEEEeC-CCcEEEEEcc--CCeEE---eeee---CCC---CC------CeEEEE-ecCCCCeEEEEeCCC-
Q 014154          264 VAEEPDSFNIYIGNG-SGDLASVDIR--TGKLL---GCFI---GKC---SG------SIRSIA-RHPTLPIIASCGLDS-  323 (430)
Q Consensus       264 ~~~sp~~~~l~~~~~-d~~i~iwd~~--~~~~~---~~~~---~~~---~~------~v~~i~-~~~~~~~l~s~~~dg-  323 (430)
                      ++|+|+|++|++++. ++.|.+|++.  +++..   ..+.   ...   ..      .+..++ |+|+|++|+++..+. 
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            999999999988775 6899999765  56542   1222   110   11      488999 999999887775432 


Q ss_pred             -----cEEEEECC-CCceeeEEE-eeccccceEEeeeccc---cccc-cccCC-CCceEecCCCC
Q 014154          324 -----YLRFWDIK-TRQLLSAVF-LKQHLNEVVFDSAFAD---KEVA-NAAAD-APMLEIQNGND  376 (430)
Q Consensus       324 -----~i~iwd~~-~~~~~~~~~-~~~~~~~~v~~~~~s~---~g~~-~~~~~-d~~i~~~~~~~  376 (430)
                           .|.+|++. +++...... ...+ ......++|+|   ||++ ++++. ++.|.+|+.+.
T Consensus       278 ~~~~~~i~v~~~~~~g~~~~~~~~~~~~-~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGSIEKQLFLSPTP-TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEEECS-SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCCCeEEEEEECCCCCEEEeeeeeecC-CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence                 89999996 666543221 2222 22346789999   8988 55554 58999998765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=7e-16  Score=140.45  Aligned_cols=294  Identities=10%  Similarity=0.024  Sum_probs=184.6

Q ss_pred             CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEEecCCCCccccee
Q 014154           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAI   91 (430)
Q Consensus        22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~   91 (430)
                      .|+.|.+||..++     +++..+..+..+    .+.+  +|||++|+++.          .++.|.+||..+++.+..+
T Consensus        29 ~d~~v~v~D~~t~-----~~~~~i~~g~~p----~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i   97 (361)
T 2oiz_A           29 TESRVHVYDYTNG-----KFLGMVPTAFNG----HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEI   97 (361)
T ss_dssp             GGCEEEEEETTTC-----CEEEEEECCEEE----EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEE
T ss_pred             ccCeEEEEECCCC-----eEEEEecCCCCC----ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEE
Confidence            4789999999887     566666544332    4455  88999999876          3678999999888877776


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc--CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~  169 (430)
                      ..... .+. .......+.+.+..        ..++++..  ++.+.+|++....        .+... +.... ...+.
T Consensus        98 ~~~~~-~~~-~g~~p~~i~~spdg--------~~l~v~n~~~~~~v~v~d~~~~~--------~~~~~-i~~~~-~~~v~  157 (361)
T 2oiz_A           98 SLPPK-RVQ-GLNYDGLFRQTTDG--------KFIVLQNASPATSIGIVDVAKGD--------YVEDV-TAAAG-CWSVI  157 (361)
T ss_dssp             EECTT-BCC-BCCCGGGEEECTTS--------SEEEEEEESSSEEEEEEETTTTE--------EEEEE-GGGTT-EEEEE
T ss_pred             EcCcc-ccc-cCCCcceEEECCCC--------CEEEEECCCCCCeEEEEECCCCc--------EEEEE-ecCCC-cceeE
Confidence            53210 000 01122224443332        35555443  4678888764221        22210 12122 22245


Q ss_pred             EcCCC-CEEEEEeCCCeEEEEECCC-CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC
Q 014154          170 VDISE-KFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ  247 (430)
Q Consensus       170 ~~~~~-~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  247 (430)
                      +.|++ ..+++.+.||.+.+|++.. ++........  ..... . .....+.+  .+++..++..+.++.|.++|+...
T Consensus       158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~--~~~~~-~-~~~~~~~~--~~~g~~~~~~~~~~~v~v~d~~~~  231 (361)
T 2oiz_A          158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSK--QMFSV-K-DDPIFIAP--ALDKDKAHFVSYYGNVYSADFSGD  231 (361)
T ss_dssp             ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECC--CCSCT-T-TSCBCSCC--EECSSEEEEEBTTSEEEEEECSSS
T ss_pred             EcCCCCeeEEEECCCCcEEEEEECCCCcEeeecccc--ceEcC-C-CCceEEEe--cccCCEEEEEeCCCeEEEEEecCC
Confidence            66754 6778888999999999865 4443221100  00000 0 01112223  456677777788999999999754


Q ss_pred             Ccce-EEEee------cC----CCeEEEEecCCCCEEEEEeC-----------CCcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154          248 RRPV-MSFDF------RE----TPIKAVAEEPDSFNIYIGNG-----------SGDLASVDIRTGKLLGCFIGKCSGSIR  305 (430)
Q Consensus       248 ~~~~-~~~~~------~~----~~i~~~~~sp~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~v~  305 (430)
                      ...+ ..+..      +.    .....++|+|+++.++++..           .+.|.+||+.+++.+.++..+ .  +.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~  308 (361)
T 2oiz_A          232 EVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--AL  308 (361)
T ss_dssp             SCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CC
T ss_pred             CceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--ee
Confidence            3211 12111      00    11123789999888887653           358999999999999999987 4  89


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCCC--ceeeEEEeeccccceEEeeecccccc
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKTR--QLLSAVFLKQHLNEVVFDSAFADKEV  359 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~s~~g~  359 (430)
                      +++|+|+|++|++++. +.|.+||..++  +.+..+  ... ......++++|+|.
T Consensus       309 ~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i--~~~-G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          309 SMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI--EGA-AEASLQVQFHPVGG  360 (361)
T ss_dssp             EEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE--TTS-CSSEEEEEECCCSC
T ss_pred             EEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe--ccC-CCCcEEEEecCCCC
Confidence            9999999999998887 99999999999  888773  222 33347889999985

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.77  E-value=5.3e-17  Score=149.68  Aligned_cols=292  Identities=10%  Similarity=0.019  Sum_probs=179.1

Q ss_pred             eeeeecCCCCCCcce---eeeeecCCCCCceeEEeec-CC--eEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEee
Q 014154           40 KVVERWGDPHSSNCV---LAASIDDSQNDPLLAVARK-NG--LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFK  113 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~---~~~~~~~~p~g~~l~~g~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  113 (430)
                      ..+..+..|......   ....|  +|||++|+.++. +|  .|.+||+.+++.........        ..+.... |.
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~--------~~~~~~~-~s   89 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCF--TRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRG--------DNTFGGF-LS   89 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCB--CTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSC--------BCSSSCE-EC
T ss_pred             cceEEecCCcccccchhhcCccC--CCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCC--------CCccceE-Ec
Confidence            445556655543211   11344  899999999876 67  48888988777554433211        1111123 33


Q ss_pred             cCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE--EEEcCCCCEEEEE-----------
Q 014154          114 RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF--SKVDISEKFSLFG-----------  180 (430)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~--~~~~~~~~~l~~~-----------  180 (430)
                      ...       ..++....++.+.+|++....        ...++.. +...+..  ..++|++.+++..           
T Consensus        90 pdg-------~~l~~~~~~~~l~~~d~~~g~--------~~~~~~~-~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           90 PDD-------DALFYVKDGRNLMRVDLATLE--------ENVVYQV-PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             TTS-------SEEEEEETTTEEEEEETTTCC--------EEEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             CCC-------CEEEEEeCCCeEEEEECCCCc--------ceeeeec-hhhcccccceeECCCCCeeccccccCccccccc
Confidence            332       467777777888888875332        3334442 2333332  3348899888742           


Q ss_pred             -----------eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCC------CcEEEE
Q 014154          181 -----------GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND------HQVRLY  242 (430)
Q Consensus       181 -----------~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d------g~i~iw  242 (430)
                                 ..+..|++||+.+++.......          ...+..++|  +| ++..|+.+..+      ..|.++
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~----------~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~  221 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE----------NQWLGHPIY--RPYDDSTVAFCHEGPHDLVDARMWLI  221 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE----------SSCEEEEEE--ETTEEEEEEEEECSCTTTSSCSEEEE
T ss_pred             ccchhhhhhccCCcceEEEEECCCCceEEeecC----------CccccccEE--CCCCCCEEEEEEecCCCCCcceEEEE
Confidence                       2346799999998765433322          145788899  89 99988887764      378888


Q ss_pred             ECCCCCcceEEEeecC--CCeEEEEecCCCCEEEEEeC-CC----cEEEEEccCCeEE--eeeeCCCCC---CeEEEEec
Q 014154          243 DTSAQRRPVMSFDFRE--TPIKAVAEEPDSFNIYIGNG-SG----DLASVDIRTGKLL--GCFIGKCSG---SIRSIARH  310 (430)
Q Consensus       243 d~~~~~~~~~~~~~~~--~~i~~~~~sp~~~~l~~~~~-d~----~i~iwd~~~~~~~--~~~~~~~~~---~v~~i~~~  310 (430)
                      |+....  ...+..+.  ..+..++|+|||+.|+..+. ++    .|++||+.+++..  ..+.++ ..   ....+.|+
T Consensus       222 d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~s  298 (388)
T 3pe7_A          222 NEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-SHLMSNYDGSLMV  298 (388)
T ss_dssp             ETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-EEEEECTTSSEEE
T ss_pred             eCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-eeeeecCCCCeEc
Confidence            887543  34444443  25778999999997765443 22    3999999988753  233321 00   01223799


Q ss_pred             CCCCeEEEE---------eCCCcEEEEECCCCceeeEEEeeccccc----------eEEeeeccccccc-c-ccCCCCce
Q 014154          311 PTLPIIASC---------GLDSYLRFWDIKTRQLLSAVFLKQHLNE----------VVFDSAFADKEVA-N-AAADAPML  369 (430)
Q Consensus       311 ~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~----------~v~~~~~s~~g~~-~-~~~~d~~i  369 (430)
                      |+|+.|+..         ..+..|++||+.+++....   ..+...          .+..++|+|||+. + ++..++..
T Consensus       299 pdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~  375 (388)
T 3pe7_A          299 GDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV---ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKP  375 (388)
T ss_dssp             EEECCC------------CCCCEEEEEETTTTEEEEE---EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSC
T ss_pred             cCCCcceeEeeeccccccCCCCEEEEEeccCCceEEe---ccccCcccccccccccCCCCccCCCCCCEEEEEecCCCce
Confidence            999887754         4566899999998776432   223220          3578899999987 3 44567777


Q ss_pred             EecCCCC
Q 014154          370 EIQNGND  376 (430)
Q Consensus       370 ~~~~~~~  376 (430)
                      .+|..+.
T Consensus       376 ~l~~~~l  382 (388)
T 3pe7_A          376 ALYLATL  382 (388)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEC
Confidence            7876543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.77  E-value=2.5e-18  Score=171.76  Aligned_cols=286  Identities=7%  Similarity=-0.081  Sum_probs=178.2

Q ss_pred             eeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc----
Q 014154           56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT----  131 (430)
Q Consensus        56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----  131 (430)
                      ...|  +|+|++++++ .|+.|++||+.+++....+..+...     ...+..+.+.+..        ..++.++.    
T Consensus        20 ~~~~--s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~SpDg--------~~la~~~~~~~~   83 (719)
T 1z68_A           20 FPNW--ISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK-----SVNASNYGLSPDR--------QFVYLESDYSKL   83 (719)
T ss_dssp             CCEE--SSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH-----TTTCSEEEECTTS--------SEEEEEEEEEEC
T ss_pred             ccEE--CCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc-----ccceeeEEECCCC--------CeEEEEecCcee
Confidence            3445  8889766655 6899999999988866555432100     0013444544332        35555554    


Q ss_pred             -----CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCC
Q 014154          132 -----KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKN  206 (430)
Q Consensus       132 -----~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~  206 (430)
                           ++.+.+|++.....        +....+  ...+..++|+|+|+.|+++. ++.|++|++.+++...........
T Consensus        84 ~~~s~~~~i~~~d~~~g~~--------~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~  152 (719)
T 1z68_A           84 WRYSYTATYYIYDLSNGEF--------VRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN  152 (719)
T ss_dssp             SSSCEEEEEEEEETTTTEE--------CCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT
T ss_pred             EEeecceEEEEEECCCCcc--------ccceec--CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC
Confidence                 56788887643220        000111  24578899999999999886 679999999887765332211110


Q ss_pred             CCCCcCCcc---------eeEEEEeecCCCCEEEEEeCCC----------------------------------cEEEEE
Q 014154          207 SLGIFTPTW---------FTSAAFLSIDDHRKFVAGTNDH----------------------------------QVRLYD  243 (430)
Q Consensus       207 ~~~~~~~~~---------v~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iwd  243 (430)
                      .....++.+         ..+++|  +|||+.|++++.|.                                  .|++||
T Consensus       153 ~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d  230 (719)
T 1z68_A          153 KIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID  230 (719)
T ss_dssp             TEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred             CeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence            000001122         257899  99999999988652                                  788999


Q ss_pred             CCCCCcc--eE-----EEeecCCCeEEEEecCCCCEEEEEeCC----CcEEEEE----ccCCeEEeee----eCCCCCCe
Q 014154          244 TSAQRRP--VM-----SFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVD----IRTGKLLGCF----IGKCSGSI  304 (430)
Q Consensus       244 ~~~~~~~--~~-----~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd----~~~~~~~~~~----~~~~~~~v  304 (430)
                      +.++...  +.     .+..|...+.+++|+||++++++....    ..|.+||    +.++++...+    .+| ...+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~-~~~~  309 (719)
T 1z68_A          231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR-TGWA  309 (719)
T ss_dssp             SSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS-SSCS
T ss_pred             CCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC-CceE
Confidence            9875421  11     123467789999999998777775433    2488999    8888776555    354 6666


Q ss_pred             E-----EEEecCCCCeEEE--EeCCC--cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCC-----CCce
Q 014154          305 R-----SIARHPTLPIIAS--CGLDS--YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD-----APML  369 (430)
Q Consensus       305 ~-----~i~~~~~~~~l~s--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~-----d~~i  369 (430)
                      .     .+.|+|+|+.|+.  ...+|  .|++||+.+++. ..  +..+ ...+..+.++ ++.. ++.+.     ++..
T Consensus       310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~--lt~~-~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~  384 (719)
T 1z68_A          310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQ--ITSG-KWEAINIFRV-TQDSLFYSSNEFEEYPGRR  384 (719)
T ss_dssp             SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EE--CSCS-SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred             ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-Ee--cccC-ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence            6     7899999986554  44555  577788877663 23  3333 2234566666 6655 44333     4788


Q ss_pred             EecCCCC
Q 014154          370 EIQNGND  376 (430)
Q Consensus       370 ~~~~~~~  376 (430)
                      ++|..+.
T Consensus       385 ~l~~~~~  391 (719)
T 1z68_A          385 NIYRISI  391 (719)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            8887653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=8.3e-17  Score=160.98  Aligned_cols=243  Identities=7%  Similarity=-0.057  Sum_probs=154.7

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcce---eeeeecCCCCCceeEEeecC---------CeEEEecC
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCV---LAASIDDSQNDPLLAVARKN---------GLTDILNP   82 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~g~~l~~g~~d---------g~i~iwd~   82 (430)
                      ..++..+ ||.|++||+.++     +....+..|......   ..+.+  +|||++|+.++.+         +.+.+||+
T Consensus        28 g~~~~~~-~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~   99 (740)
T 4a5s_A           28 HEYLYKQ-ENNILVFNAEYG-----NSSVFLENSTFDEFGHSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDL   99 (740)
T ss_dssp             SEEEEEE-TTEEEEEETTTC-----CEEEEECTTTTTTCCSCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CcEEEEc-CCcEEEEECCCC-----ceEEEEechhhhhhcccccceEE--CCCCCEEEEEECCeeeEEEccceEEEEEEC
Confidence            3444444 899999999987     445556666543221   12455  8999999998876         33446665


Q ss_pred             CCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC
Q 014154           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (430)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~  162 (430)
                      .+++... +                                                                   ..+.
T Consensus       100 ~~~~~~~-l-------------------------------------------------------------------~~~~  111 (740)
T 4a5s_A          100 NKRQLIT-E-------------------------------------------------------------------ERIP  111 (740)
T ss_dssp             TTTEECC-S-------------------------------------------------------------------SCCC
T ss_pred             CCCcEEE-c-------------------------------------------------------------------ccCC
Confidence            5443111 0                                                                   0122


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcc---------eeEEEEeecCCCCEEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW---------FTSAAFLSIDDHRKFVAG  233 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~l~s~  233 (430)
                      ..+...+|+|+|+.|+.+. ++.|++|++.++.................++.+         ...+.|  +|||+.|+.+
T Consensus       112 ~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~  188 (740)
T 4a5s_A          112 NNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYA  188 (740)
T ss_dssp             TTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEE
T ss_pred             CcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEE
Confidence            4567889999999999885 679999999887654322111100000001111         234788  9999999987


Q ss_pred             eCCC------------------------------------cEEEEECCC---CCc-ceEEEee------cCCCeEEEEec
Q 014154          234 TNDH------------------------------------QVRLYDTSA---QRR-PVMSFDF------RETPIKAVAEE  267 (430)
Q Consensus       234 ~~dg------------------------------------~i~iwd~~~---~~~-~~~~~~~------~~~~i~~~~~s  267 (430)
                      +.|.                                    .|++||+.+   +.. ....+..      |...+..++|+
T Consensus       189 ~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ws  268 (740)
T 4a5s_A          189 QFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWA  268 (740)
T ss_dssp             EEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEE
T ss_pred             EEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEe
Confidence            5332                                    478899887   631 1233432      66778999999


Q ss_pred             CCCCEEEEEeC----CCcEEEEEccCCe----EE--eee--eCCCCCCeE-----EEEecCCCCeEE-EEeC-C--CcEE
Q 014154          268 PDSFNIYIGNG----SGDLASVDIRTGK----LL--GCF--IGKCSGSIR-----SIARHPTLPIIA-SCGL-D--SYLR  326 (430)
Q Consensus       268 p~~~~l~~~~~----d~~i~iwd~~~~~----~~--~~~--~~~~~~~v~-----~i~~~~~~~~l~-s~~~-d--g~i~  326 (430)
                      |||+.++....    +..|++||+.+++    +.  ..+  ..+ ...|.     .+.|+|||+.|+ ..+. +  ..|+
T Consensus       269 pdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~  347 (740)
T 4a5s_A          269 TQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHIC  347 (740)
T ss_dssp             ETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEE
T ss_pred             CCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEE
Confidence            99997665543    2379999999887    32  222  334 44444     788999999876 6653 3  4688


Q ss_pred             EEECCCCceee
Q 014154          327 FWDIKTRQLLS  337 (430)
Q Consensus       327 iwd~~~~~~~~  337 (430)
                      +||+.+++...
T Consensus       348 ~~~~~~~~~~~  358 (740)
T 4a5s_A          348 YFQIDKKDCTF  358 (740)
T ss_dssp             EEETTCSSCEE
T ss_pred             EEECCCCceEe
Confidence            99988776554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.75  E-value=1.1e-15  Score=137.63  Aligned_cols=208  Identities=10%  Similarity=-0.004  Sum_probs=148.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEe-CCCcE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGT-NDHQV  239 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~-~dg~i  239 (430)
                      .....++++++++++++...++.|++||..... .+..+...........+...+..+++  +| ++.++++.+ .++.|
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~--~~~~g~lyv~d~~~~~~I  168 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV--EPSTGAVFVSDGYCNSRI  168 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE--CTTTCCEEEEECSSCCEE
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE--eCCCCeEEEEeCCCCCeE
Confidence            467889999999988888888999999986442 34444221100000112246789999  78 788888876 68999


Q ss_pred             EEEECCCCCcceEEEeecC----------CCeEEEEecCC-CCEEEEEeCCCcEEEEEccCCeEEeeeeCC-CCCCeEEE
Q 014154          240 RLYDTSAQRRPVMSFDFRE----------TPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSI  307 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~----------~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i  307 (430)
                      ++||.. +. .+..+....          .....|+++|+ +.++++...++.|++||..+++.+..+... +...+..+
T Consensus       169 ~~~~~~-g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~  246 (329)
T 3fvz_A          169 VQFSPS-GK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAI  246 (329)
T ss_dssp             EEECTT-SC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEE
T ss_pred             EEEcCC-CC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCccee
Confidence            999954 33 345553322          23789999998 677777778899999999889988887532 15678899


Q ss_pred             EecCCCCeEEEE-------eCCCcEEEEECCCCceeeEEEe-eccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          308 ARHPTLPIIASC-------GLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       308 ~~~~~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +|+| +..+++.       ..+..|++|++.+++.+..+.. .++.. ...+++++|+|.+ ++...++.|++|+...
T Consensus       247 ~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          247 SYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             EEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             eecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence            9999 4333333       3455899999999998887421 23433 3589999999977 8888899999998754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=1.5e-16  Score=159.04  Aligned_cols=195  Identities=10%  Similarity=-0.006  Sum_probs=132.1

Q ss_pred             EEEEEcCCCCEEEEEeCC---------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154          166 AFSKVDISEKFSLFGGKG---------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  236 (430)
                      ..++|+|++++|++++.+         +.+.+||+.+++... +..+         ...+...+|  +|||+.|+.+. +
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l~~~---------~~~~~~~~~--SPdG~~la~~~-~  131 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-EERI---------PNNTQWVTW--SPVGHKLAYVW-N  131 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-SSCC---------CTTEEEEEE--CSSTTCEEEEE-T
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-cccC---------CCcceeeEE--CCCCCEEEEEE-C
Confidence            357889999999988875         567799999887543 3322         256889999  99999999874 6


Q ss_pred             CcEEEEECCCCCcceEEEeecCCCe-----------------EEEEecCCCCEEEEEeCCC-------------------
Q 014154          237 HQVRLYDTSAQRRPVMSFDFRETPI-----------------KAVAEEPDSFNIYIGNGSG-------------------  280 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~~~~i-----------------~~~~~sp~~~~l~~~~~d~-------------------  280 (430)
                      +.|++||+.++.....+..++...+                 ..+.|||||++|+.++.|.                   
T Consensus       132 ~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~  211 (740)
T 4a5s_A          132 NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYP  211 (740)
T ss_dssp             TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSC
T ss_pred             CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCC
Confidence            8999999987653222222332222                 3589999999999875321                   


Q ss_pred             -----------------cEEEEEccC---C---eEEeeee------CCCCCCeEEEEecCCCCeEEEEeC----CCcEEE
Q 014154          281 -----------------DLASVDIRT---G---KLLGCFI------GKCSGSIRSIARHPTLPIIASCGL----DSYLRF  327 (430)
Q Consensus       281 -----------------~i~iwd~~~---~---~~~~~~~------~~~~~~v~~i~~~~~~~~l~s~~~----dg~i~i  327 (430)
                                       .|++||+.+   +   +.. .+.      ++ ...+..++|+|||++++....    +..|++
T Consensus       212 ~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~-~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~  289 (740)
T 4a5s_A          212 KTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIG-DHYLCDVTWATQERISLQWLRRIQNYSVMDI  289 (740)
T ss_dssp             EEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTS-CEEEEEEEEEETTEEEEEEEESSTTEEEEEE
T ss_pred             cceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-EecCCccCCCC-CeEEEEEEEeCCCeEEEEEeCCCCCEEEEEE
Confidence                             488899988   7   333 333      24 677999999999997665532    347999


Q ss_pred             EECCCCc----ee--eEEEeeccccceE-----Eeeeccccccc-c-ccC-CCC--ceEecCCCC
Q 014154          328 WDIKTRQ----LL--SAVFLKQHLNEVV-----FDSAFADKEVA-N-AAA-DAP--MLEIQNGND  376 (430)
Q Consensus       328 wd~~~~~----~~--~~~~~~~~~~~~v-----~~~~~s~~g~~-~-~~~-~d~--~i~~~~~~~  376 (430)
                      ||+.+++    +.  ..+...++ ...+     ..++|+|||+. + ..+ .+|  .|.+|+.+.
T Consensus       290 ~d~~tg~~~~~~~~~~~l~~~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          290 CDYDESSGRWNCLVARQHIEMST-TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             EEEETTTTEEEECGGGCEEEECS-SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred             EECCCCccccceeEEEEeeeccC-CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence            9999887    22  22111333 2222     37899999986 4 343 444  456666554

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=1.3e-14  Score=127.84  Aligned_cols=227  Identities=12%  Similarity=0.037  Sum_probs=160.0

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeee-----cCCCceEEEEEc-CCCCEEEEEeC-CCeEEEEECCCCeee
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV-----CASGTIAFSKVD-ISEKFSLFGGK-GVEVNVWDLDKCEKI  197 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~-----~~~~~i~~~~~~-~~~~~l~~~~~-d~~i~~~d~~~~~~~  197 (430)
                      .+++...++.+.+|+...         ..+..+..     .+...+..++++ +++.++++... ++.|.+|| .+++.+
T Consensus        43 l~v~~~~~~~i~~~d~~g---------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~  112 (286)
T 1q7f_A           43 IIVADTNNHRIQIFDKEG---------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFV  112 (286)
T ss_dssp             EEEEEGGGTEEEEECTTS---------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEE
T ss_pred             EEEEECCCCEEEEECCCC---------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEE
Confidence            556667788888887431         12333321     122467889994 66666655533 78999999 566666


Q ss_pred             EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe--ecCCCeEEEEecCCCCEEEE
Q 014154          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYI  275 (430)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~  275 (430)
                      ..+....        ...+..+++  +++++++++...++.|.+||... . .+..+.  .+...+.+++++|+++++++
T Consensus       113 ~~~~~~~--------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~  180 (286)
T 1q7f_A          113 RKFGATI--------LQHPRGVTV--DNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQEIFIS  180 (286)
T ss_dssp             EEECTTT--------CSCEEEEEE--CTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred             EEecCcc--------CCCceEEEE--eCCCCEEEEECCCCEEEEEcCCC-C-EEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence            6553321        145788999  88998888877889999999753 3 344443  23456899999999987777


Q ss_pred             EeCCCcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEEEEeCCC-cEEEEECCCCceeeEEEeeccccceEEeee
Q 014154          276 GNGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDS-YLRFWDIKTRQLLSAVFLKQHLNEVVFDSA  353 (430)
Q Consensus       276 ~~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  353 (430)
                      ...++.|++||. .++.+..+..+ +...+..++++++|.++++...++ .|.+||. +++.+..+..... ...+.+++
T Consensus       181 ~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~-~~~~~~i~  257 (286)
T 1q7f_A          181 DNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK-HAQCFDVA  257 (286)
T ss_dssp             EGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC-CSCEEEEE
T ss_pred             ECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCC-CCcceeEE
Confidence            778899999997 55666666542 125789999999999888887776 9999995 5677766533222 22357899


Q ss_pred             ccccccccccCCCCceEecCCCC
Q 014154          354 FADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       354 ~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      ++|+|.+++++.++.|++|+...
T Consensus       258 ~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          258 LMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             EETTTEEEEEETTTEEEEEECSC
T ss_pred             ECCCCcEEEECCCCeEEEEEccc
Confidence            99999984446789999998754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=2e-14  Score=126.50  Aligned_cols=245  Identities=9%  Similarity=0.107  Sum_probs=164.8

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc--
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--  131 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--  131 (430)
                      ...+.+  .|+|+++++...++.|.+||.. ++.+..+.....  ...+...+..+.+.+..        +.++.+..  
T Consensus        32 p~~v~~--~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~--~~~~~~~p~~i~~~~~~--------g~l~v~~~~~   98 (286)
T 1q7f_A           32 PSGVAV--NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK--RDSQLLYPNRVAVVRNS--------GDIIVTERSP   98 (286)
T ss_dssp             EEEEEE--CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS--STTCBSSEEEEEEETTT--------TEEEEEECGG
T ss_pred             CceEEE--CCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC--CcccccCceEEEEEcCC--------CeEEEEcCCC
Confidence            344555  5778888888889999999975 655554432100  01112345555553332        34444442  


Q ss_pred             CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154          132 KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (430)
Q Consensus       132 ~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  211 (430)
                      ++.+.+|+..         ...+..+.......+..++++++++++++...++.|.+||.. ++.+..+....       
T Consensus        99 ~~~i~~~d~~---------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-------  161 (286)
T 1q7f_A           99 THQIQIYNQY---------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK-------  161 (286)
T ss_dssp             GCEEEEECTT---------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------
T ss_pred             CCEEEEECCC---------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCC-------
Confidence            6777777621         113344433344578899999999988877788899999964 45554443211       


Q ss_pred             CCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec--CCCeEEEEecCCCCEEEEEeCCC-cEEEEEcc
Q 014154          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--ETPIKAVAEEPDSFNIYIGNGSG-DLASVDIR  288 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~i~~~~~sp~~~~l~~~~~d~-~i~iwd~~  288 (430)
                      +...+..+++  +++++++++...++.|++||... . .+..+..+  ...+..++++|+|+++++...++ .|.+||. 
T Consensus       162 ~~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-  236 (286)
T 1q7f_A          162 HLEFPNGVVV--NDKQEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-  236 (286)
T ss_dssp             TCSSEEEEEE--CSSSEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-
T ss_pred             ccCCcEEEEE--CCCCCEEEEECCCCEEEEEcCCC-C-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-
Confidence            1145788999  88898888877899999999864 3 34555433  25789999999998888887776 9999995 


Q ss_pred             CCeEEeeeeCCC-CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154          289 TGKLLGCFIGKC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       289 ~~~~~~~~~~~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~  334 (430)
                      +++.+..+..+. ...+.+++++|+|.++++ +.|+.|++|++....
T Consensus       237 ~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          237 DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred             CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence            566666666541 234789999999987766 679999999986543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.72  E-value=3.7e-15  Score=147.35  Aligned_cols=194  Identities=15%  Similarity=0.008  Sum_probs=132.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCC----------CeEEEEECCC------CeeeEeeC-CCCCCCCCCcCCcceeEEEEeecC
Q 014154          163 GTIAFSKVDISEKFSLFGGKG----------VEVNVWDLDK------CEKIWTAK-PPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~------~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                      ..+..++|+|+++.|++++.+          ..|++||+.+      +... .+. .+         ...+..++|  +|
T Consensus       130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~---------~~~~~~~~~--Sp  197 (662)
T 3azo_A          130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA---------HRFVTGPRL--SP  197 (662)
T ss_dssp             EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC---------SSEECCCEE--CT
T ss_pred             ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecC---------CCcccCceE--CC
Confidence            456678999999999988876          5899999987      4433 333 22         156778889  89


Q ss_pred             CCCEEEEEeCC--------CcEEEEECC-CCC--cceEEEeecCCCeEEEEecCCCCEEEEEeCCC--cEEEEEccCCeE
Q 014154          226 DHRKFVAGTND--------HQVRLYDTS-AQR--RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKL  292 (430)
Q Consensus       226 ~~~~l~s~~~d--------g~i~iwd~~-~~~--~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~--~i~iwd~~~~~~  292 (430)
                      ||++|+.++.+        ..|++||+. ++.  ........|...+..+.|+|||++++++..++  .|.+||+.+++.
T Consensus       198 DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~  277 (662)
T 3azo_A          198 DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA  277 (662)
T ss_dssp             TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred             CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence            99999987755        379999998 441  33444445578899999999999888888888  677777767776


Q ss_pred             EeeeeCCCCCC--------eEEEEecCCCCeEEEEeCCCcEEEE--ECCCCceeeEEEeeccccceEEee-eccccccc-
Q 014154          293 LGCFIGKCSGS--------IRSIARHPTLPIIASCGLDSYLRFW--DIKTRQLLSAVFLKQHLNEVVFDS-AFADKEVA-  360 (430)
Q Consensus       293 ~~~~~~~~~~~--------v~~i~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~-~~s~~g~~-  360 (430)
                      ......+ ...        +..++|+|++.++++++. +.++||  |+.+++ +..  +..+ ...+..+ +++++..+ 
T Consensus       278 ~~l~~~~-~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~--l~~~-~~~~~~~~s~~~~~~~~  351 (662)
T 3azo_A          278 TQLCRRE-EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVD--AAGP-WTEWAATLTVSGTRAVG  351 (662)
T ss_dssp             EESSCCS-SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEE--CCSS-CCEEEEEEEEETTEEEE
T ss_pred             eeccccc-ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEE--ecCC-CCeEEEEEecCCCEEEE
Confidence            5444432 222        567899999999999998 999999  655555 444  4444 3334555 44433333 


Q ss_pred             cccCCCCceEecCC
Q 014154          361 NAAADAPMLEIQNG  374 (430)
Q Consensus       361 ~~~~~d~~i~~~~~  374 (430)
                      ++++.+....+|..
T Consensus       352 ~~~~~~~~~~i~~~  365 (662)
T 3azo_A          352 VAASPRTAYEVVEL  365 (662)
T ss_dssp             EEEETTEEEEEEEE
T ss_pred             EEcCCCCCCEEEEE
Confidence            44455554455543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.69  E-value=9.6e-14  Score=124.66  Aligned_cols=269  Identities=8%  Similarity=-0.022  Sum_probs=174.9

Q ss_pred             cCCCceEEEEccCCCCCcceeeeecC----CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154           21 DSLGLIKVIEARGEHGGVPKVVERWG----DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (430)
Q Consensus        21 ~~dg~i~vw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~   96 (430)
                      ..++.|.+||..++     ++...+.    ...-......+.++   ++.++++...++.|.+||..+++.+..+...  
T Consensus        14 ~~~~~l~~~d~~t~-----~~~~~i~~~~n~~~lg~~~~~i~~~---~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~--   83 (328)
T 3dsm_A           14 YSNATLSYYDPATC-----EVENEVFYRANGFKLGDVAQSMVIR---DGIGWIVVNNSHVIFAIDINTFKEVGRITGF--   83 (328)
T ss_dssp             SCCBEEEEEETTTT-----EEECSHHHHHHSSCCBSCEEEEEEE---TTEEEEEEGGGTEEEEEETTTCCEEEEEECC--
T ss_pred             CCCceEEEEECCCC-----EEhhhhHhhhcCcccCccceEEEEE---CCEEEEEEcCCCEEEEEECcccEEEEEcCCC--
Confidence            34899999999987     5544331    11111112233332   2345566667899999999999987777431  


Q ss_pred             CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC----CceEEEEEcC
Q 014154           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS----GTIAFSKVDI  172 (430)
Q Consensus        97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~----~~i~~~~~~~  172 (430)
                             .....+.+.+..        ..+++...++.+.+++.....        .+..+.....    .....+++  
T Consensus        84 -------~~p~~i~~~~~g--------~lyv~~~~~~~v~~iD~~t~~--------~~~~i~~g~~~~~~~~p~~i~~--  138 (328)
T 3dsm_A           84 -------TSPRYIHFLSDE--------KAYVTQIWDYRIFIINPKTYE--------ITGYIECPDMDMESGSTEQMVQ--  138 (328)
T ss_dssp             -------SSEEEEEEEETT--------EEEEEEBSCSEEEEEETTTTE--------EEEEEECTTCCTTTCBCCCEEE--
T ss_pred             -------CCCcEEEEeCCC--------eEEEEECCCCeEEEEECCCCe--------EEEEEEcCCccccCCCcceEEE--
Confidence                   244445543321        133444367888888754221        2223333220    14556677  


Q ss_pred             CCCEEEEEe--CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----------CcEE
Q 014154          173 SEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----------HQVR  240 (430)
Q Consensus       173 ~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~  240 (430)
                      ++..|+++.  .++.|.++|+.+++.+..+...          .....+++  ++++++++++..+          +.|.
T Consensus       139 ~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g----------~~p~~i~~--~~dG~l~v~~~~~~~~~~~~~~~~~v~  206 (328)
T 3dsm_A          139 YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG----------IQPTSLVM--DKYNKMWTITDGGYEGSPYGYEAPSLY  206 (328)
T ss_dssp             ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS----------SCBCCCEE--CTTSEEEEEBCCBCTTCSSCBCCCEEE
T ss_pred             ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC----------CCccceEE--cCCCCEEEEECCCccCCccccCCceEE
Confidence            355555555  4889999999999887766542          23466788  8889877776554          7899


Q ss_pred             EEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEee--eeCCCCCCeEEEEecC-CCCeE
Q 014154          241 LYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHP-TLPII  316 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~-~~~~l  316 (430)
                      ++|..+++ ....+... ......++|+|++++|+++..  .|.+||+.+++....  +... ......++++| ++.++
T Consensus       207 ~id~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~ly  282 (328)
T 3dsm_A          207 RIDAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVY  282 (328)
T ss_dssp             EEETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEE
T ss_pred             EEECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEE
Confidence            99998755 34455432 236899999999999988765  899999988876421  2221 35689999999 45555


Q ss_pred             EEE----eCCCcEEEEECCCCceeeEEEe
Q 014154          317 ASC----GLDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       317 ~s~----~~dg~i~iwd~~~~~~~~~~~~  341 (430)
                      ++.    ..++.|.+||.. ++.+.++..
T Consensus       283 va~~~~y~~~~~V~v~d~~-g~~~~~i~~  310 (328)
T 3dsm_A          283 VADAIDYQQQGIVYRYSPQ-GKLIDEFYV  310 (328)
T ss_dssp             EEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred             EEcccccccCCEEEEECCC-CCEEEEEEe
Confidence            555    578899999998 999888654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.69  E-value=8.8e-16  Score=141.79  Aligned_cols=268  Identities=10%  Similarity=0.013  Sum_probs=162.8

Q ss_pred             CCCCceeEEeecC---CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEE
Q 014154           62 SQNDPLLAVARKN---GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR  138 (430)
Q Consensus        62 ~p~g~~l~~g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~  138 (430)
                      +|||++|+.....   ..|.+||+.+++........         ........|....       ..++....++.+.+|
T Consensus        44 SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~---------~~~~~~~~~spdg-------~~l~~~~~~~~l~~~  107 (396)
T 3c5m_A           44 TQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK---------GDNTFGGFISTDE-------RAFFYVKNELNLMKV  107 (396)
T ss_dssp             CTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS---------CBCTTTCEECTTS-------SEEEEEETTTEEEEE
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC---------CCccccceECCCC-------CEEEEEEcCCcEEEE
Confidence            8899998876443   46888898777643322211         0111001233332       466666677777777


Q ss_pred             EeeecCccccCCCcceEEeeecCCCceEE-------------------EEEcCCCCEEEEE-----eCCCeEEEEECCCC
Q 014154          139 SIEVTKVSAESSCSTVKSWNVCASGTIAF-------------------SKVDISEKFSLFG-----GKGVEVNVWDLDKC  194 (430)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~d~~i~~~d~~~~  194 (430)
                      ++....        ...+.... ......                   +.++|+++.++..     ..+..|++||+.++
T Consensus       108 d~~~~~--------~~~~~~~~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g  178 (396)
T 3c5m_A          108 DLETLE--------EQVIYTVD-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG  178 (396)
T ss_dssp             ETTTCC--------EEEEEECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC
T ss_pred             ECCCCC--------cEEEEecc-cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC
Confidence            754221        11222211 111111                   3467777776654     35668999999887


Q ss_pred             eeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCC------CcEEEEECCCCCcceEEEeec--CCCeEEEE
Q 014154          195 EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND------HQVRLYDTSAQRRPVMSFDFR--ETPIKAVA  265 (430)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~--~~~i~~~~  265 (430)
                      +.......          ...+..+.|  +| ++..|+..+.+      ..|.+||+..+.  ...+..+  ...+..++
T Consensus       179 ~~~~~~~~----------~~~~~~~~~--sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          179 ELEVIHQD----------TAWLGHPIY--RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEF  244 (396)
T ss_dssp             CEEEEEEE----------SSCEEEEEE--ETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEE
T ss_pred             cEEeeccC----------CcccccceE--CCCCCCEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceE
Confidence            65443321          145788889  78 78777766653      368889987643  2333333  23578899


Q ss_pred             ecCCCCEEEEEeCC-----CcEEEEEccCCeEEeeeeCCCCCCeEEEEecC-CCCeEEEEe----------------CCC
Q 014154          266 EEPDSFNIYIGNGS-----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHP-TLPIIASCG----------------LDS  323 (430)
Q Consensus       266 ~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~----------------~dg  323 (430)
                      |+|+|++|+.++.+     +.|++||+.+++.......  . ... +.|+| +|+++++++                .+.
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~--~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~  320 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM--P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP  320 (396)
T ss_dssp             ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC--C-SEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred             ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC--C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence            99999988777544     4499999998876443322  1 233 88999 999888765                347


Q ss_pred             cEEEEECCCCceeeEEEeeccccc----------eEEeeeccccccc-cc-cCCCCceEecCCC
Q 014154          324 YLRFWDIKTRQLLSAVFLKQHLNE----------VVFDSAFADKEVA-NA-AADAPMLEIQNGN  375 (430)
Q Consensus       324 ~i~iwd~~~~~~~~~~~~~~~~~~----------~v~~~~~s~~g~~-~~-~~~d~~i~~~~~~  375 (430)
                      .|++||+.+++...   +..+...          .+..++|+|||+. ++ +..++...+|..+
T Consensus       321 ~i~~~d~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          321 FLYVLNTKAKSAQK---LCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             EEEEEETTTTBCCE---EEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cEEEEecccCceEE---ccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence            89999998877543   2223221          1467899999986 44 3446666676554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.67  E-value=3.3e-14  Score=129.36  Aligned_cols=269  Identities=11%  Similarity=0.072  Sum_probs=172.1

Q ss_pred             CCCceeEEee------cCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc------
Q 014154           63 QNDPLLAVAR------KNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------  130 (430)
Q Consensus        63 p~g~~l~~g~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------  130 (430)
                      |+++++++..      .|+.|.+||..+++.+..+...         ... .+.+.+..        ..+.++.      
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g---------~~p-~i~~spdg--------~~lyv~~~~~~~~   74 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA---------FNG-HVQVSNDG--------KKIYTMTTYHERI   74 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC---------EEE-EEEECTTS--------SEEEEEEEEETTS
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC---------CCC-ceEECCCC--------CEEEEEEeccccc
Confidence            3455555543      4789999999999877665531         112 45554433        2555443      


Q ss_pred             ----cCCeeEEEEeeecCccccCCCcceEEeeec-----CCCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEe
Q 014154          131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVC-----ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       131 ----~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~  199 (430)
                          .++.+.+|++....        .+......     ++.....++++|++++|+++..  ++.|.+||+.+++.+..
T Consensus        75 ~~g~~~~~v~v~d~~t~~--------~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A           75 TRGKRSDVVEVWDADKLT--------FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             SSSCEEEEEEEEETTTCC--------EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             ccCCCCCEEEEEECcCCc--------EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence                24568888754221        23333322     2345667999999999998864  57999999999988776


Q ss_pred             -eCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeCCCcEEEEECCCCCcceEEE------eecCCCeEEEEecCCCC
Q 014154          200 -AKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTNDHQVRLYDTSAQRRPVMSF------DFRETPIKAVAEEPDSF  271 (430)
Q Consensus       200 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~~i~~~~~sp~~~  271 (430)
                       +....           ...+.+  .|++ ..+++.+.||.+.+|++..........      ..+..++ .+.++|++.
T Consensus       147 ~i~~~~-----------~~~v~~--~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~  212 (361)
T 2oiz_A          147 VTAAAG-----------CWSVIP--QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD  212 (361)
T ss_dssp             EGGGTT-----------EEEEEE--CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS
T ss_pred             EecCCC-----------cceeEE--cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC
Confidence             54321           122344  3443 678888999999999987533322111      1112222 334467787


Q ss_pred             EEEEEeCCCcEEEEEccCCeE--EeeeeCC---------CCCCeEEEEecCCCCeEEEEeC-----------CCcEEEEE
Q 014154          272 NIYIGNGSGDLASVDIRTGKL--LGCFIGK---------CSGSIRSIARHPTLPIIASCGL-----------DSYLRFWD  329 (430)
Q Consensus       272 ~l~~~~~d~~i~iwd~~~~~~--~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~-----------dg~i~iwd  329 (430)
                      .++..+.++.|.++|+.....  +..+...         .......++|+|++..++++..           .+.|.+||
T Consensus       213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD  292 (361)
T 2oiz_A          213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMD  292 (361)
T ss_dssp             EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEE
T ss_pred             EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEE
Confidence            888888899999999975432  2222110         0011223789999888776643           34899999


Q ss_pred             CCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCC
Q 014154          330 IKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      +.+++.+.++.  .+.   ..+++|+|||++ ++++. +.|.+||....
T Consensus       293 ~~t~~~v~~i~--~~~---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          293 TKTKQRVARIP--GRD---ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             TTTTEEEEEEE--CTT---CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             CCCCcEEEEEe--cCC---eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            99999999853  342   689999999998 44444 99999987664

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.67  E-value=1.6e-14  Score=133.01  Aligned_cols=202  Identities=10%  Similarity=0.029  Sum_probs=138.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE---------
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG---------  233 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~---------  233 (430)
                      ..+..+.|+|+++.|++++.++.|++||+.+++.......+.         ..+....|..++++.+++..         
T Consensus        81 ~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~---------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~  151 (388)
T 3pe7_A           81 DNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPA---------EWVGYGTWVANSDCTKLVGIEIRREDWVP  151 (388)
T ss_dssp             BCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT---------TEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred             CCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechh---------hcccccceeECCCCCeeccccccCccccc
Confidence            344467899999999999999999999999887665444332         34444444447899888743         


Q ss_pred             -------------eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEeCC------CcEEEEEccCCeEE
Q 014154          234 -------------TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGS------GDLASVDIRTGKLL  293 (430)
Q Consensus       234 -------------~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d------~~i~iwd~~~~~~~  293 (430)
                                   ..+..|.+||+.+++  ...+..+...+..+.|+| +++.|+....+      ..|.++|+..+...
T Consensus       152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~  229 (388)
T 3pe7_A          152 LTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR  229 (388)
T ss_dssp             CCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE
T ss_pred             ccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE
Confidence                         234689999999865  445555667899999999 99988877753      37888888665543


Q ss_pred             eeeeCCCC-CCeEEEEecCCCCeEEEEeCC-C----cEEEEECCCCceeeEEEeeccccce---EEeeeccccccc-ccc
Q 014154          294 GCFIGKCS-GSIRSIARHPTLPIIASCGLD-S----YLRFWDIKTRQLLSAVFLKQHLNEV---VFDSAFADKEVA-NAA  363 (430)
Q Consensus       294 ~~~~~~~~-~~v~~i~~~~~~~~l~s~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~s~~g~~-~~~  363 (430)
                       .+..+.. ..+..+.|+|||+.|+..+.+ +    .|++||+.+++......+.++ ...   ...++|+|||+. ++.
T Consensus       230 -~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~-~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          230 -KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPAC-SHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             -ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCE-EEEEECTTSSEEEEEECCC---
T ss_pred             -EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCc-eeeeecCCCCeEccCCCcceeE
Confidence             3433312 357889999999977665432 2    399999999886443223331 111   123479999997 432


Q ss_pred             ---------CCCCceEecCCCCC
Q 014154          364 ---------ADAPMLEIQNGNDT  377 (430)
Q Consensus       364 ---------~~d~~i~~~~~~~~  377 (430)
                               ..+..|.+|+....
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          308 VQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             ---------CCCCEEEEEETTTT
T ss_pred             eeeccccccCCCCEEEEEeccCC
Confidence                     45678999988753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=4e-14  Score=127.30  Aligned_cols=202  Identities=13%  Similarity=0.108  Sum_probs=153.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeE
Q 014154          163 GTIAFSKVDISEKFSLFGGKG------------------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTS  218 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~  218 (430)
                      +.+.+++++|+++++++...+                        +.|.+||..+++.+..+....        ...+..
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--------~~~p~g   95 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL--------FYLPHG   95 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT--------CSSEEE
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc--------cCCceE
Confidence            578999999999999887777                        479999998888776554211        145788


Q ss_pred             EEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe---------ecCCCeEEEEecC-CCCEEEEEe-CCCcEEEEEc
Q 014154          219 AAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD---------FRETPIKAVAEEP-DSFNIYIGN-GSGDLASVDI  287 (430)
Q Consensus       219 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~i~~~~~sp-~~~~l~~~~-~d~~i~iwd~  287 (430)
                      +++  +++++++++...++.|++||.......+..+.         .+-.....++++| ++.++++.+ .++.|++|| 
T Consensus        96 ia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-  172 (329)
T 3fvz_A           96 LSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-  172 (329)
T ss_dssp             EEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-
T ss_pred             EEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-
Confidence            999  89999888888899999999875422355552         3334688999999 787777776 689999999 


Q ss_pred             cCCeEEeeeeCC---------CCCCeEEEEecCC-CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc-
Q 014154          288 RTGKLLGCFIGK---------CSGSIRSIARHPT-LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-  356 (430)
Q Consensus       288 ~~~~~~~~~~~~---------~~~~v~~i~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-  356 (430)
                      .+++.+..+...         +-.....++++|+ +.++++...++.|++||..+++.+..+....+ ...+.+++|+| 
T Consensus       173 ~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~-~~~~~~~~~~pg  251 (329)
T 3fvz_A          173 PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF-GRNVFAISYIPG  251 (329)
T ss_dssp             TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT-TTCEEEEEEETT
T ss_pred             CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc-CCCcceeeecCC
Confidence            577777666422         0234899999998 77777778889999999998998887543334 34467888888 


Q ss_pred             -----cccc-cccCCCCceEecCCCC
Q 014154          357 -----KEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       357 -----~g~~-~~~~~d~~i~~~~~~~  376 (430)
                           +|.. ++...+..+.+|+...
T Consensus       252 ~~~~~~g~~~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             EEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred             EEEEeCCCEEeccCCCcEEEEEEcCC
Confidence                 7766 6666777899998654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=5.8e-14  Score=126.09  Aligned_cols=269  Identities=9%  Similarity=-0.018  Sum_probs=178.6

Q ss_pred             ecCCeEEEecCCCCcccceeec-cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCC
Q 014154           72 RKNGLTDILNPLNGDLRVAISN-AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESS  150 (430)
Q Consensus        72 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  150 (430)
                      +.++.|.++|..+++....+.. ...   .+-.+....+.+. ..        ..+++...++.+.+++.....      
T Consensus        14 ~~~~~l~~~d~~t~~~~~~i~~~~n~---~~lg~~~~~i~~~-~~--------~lyv~~~~~~~v~viD~~t~~------   75 (328)
T 3dsm_A           14 YSNATLSYYDPATCEVENEVFYRANG---FKLGDVAQSMVIR-DG--------IGWIVVNNSHVIFAIDINTFK------   75 (328)
T ss_dssp             SCCBEEEEEETTTTEEECSHHHHHHS---SCCBSCEEEEEEE-TT--------EEEEEEGGGTEEEEEETTTCC------
T ss_pred             CCCceEEEEECCCCEEhhhhHhhhcC---cccCccceEEEEE-CC--------EEEEEEcCCCEEEEEECcccE------
Confidence            3489999999998886654421 000   0111233445442 22        356666677889998865322      


Q ss_pred             CcceEEeeecCCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCE
Q 014154          151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (430)
Q Consensus       151 ~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (430)
                        .+..+  ........+++++++ .++++. .++.|.+||+.+++....+......    ........+++    ++..
T Consensus        76 --~~~~i--~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~----~~~~~p~~i~~----~~~~  142 (328)
T 3dsm_A           76 --EVGRI--TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMD----MESGSTEQMVQ----YGKY  142 (328)
T ss_dssp             --EEEEE--ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCC----TTTCBCCCEEE----ETTE
T ss_pred             --EEEEc--CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCcc----ccCCCcceEEE----ECCE
Confidence              33333  335678899998888 455555 7899999999998877665432200    00013556666    2344


Q ss_pred             EEEEe--CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC----------CcEEEEEccCCeEEeeee
Q 014154          230 FVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS----------GDLASVDIRTGKLLGCFI  297 (430)
Q Consensus       230 l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~  297 (430)
                      |+++.  .++.|.+||+.+++ .+..+... .....++++|+|+++++...+          +.|.+||..+++....+.
T Consensus       143 lyv~~~~~~~~v~viD~~t~~-~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~  220 (328)
T 3dsm_A          143 VYVNCWSYQNRILKIDTETDK-VVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK  220 (328)
T ss_dssp             EEEEECTTCCEEEEEETTTTE-EEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCCCEEEEEECCCCe-EEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe
Confidence            44444  48899999999865 35555543 345788999999877766554          789999999999887776


Q ss_pred             CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc-cccc-ccc----CCCCceEe
Q 014154          298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-KEVA-NAA----ADAPMLEI  371 (430)
Q Consensus       298 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~-~~~----~~d~~i~~  371 (430)
                      .........++|+|++.+|+++..  .|.+||+.+++......+... ......++++| ++.+ ++.    ..++.|.+
T Consensus       221 ~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v  297 (328)
T 3dsm_A          221 FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR  297 (328)
T ss_dssp             CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred             cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence            431236899999999998888755  899999998876432112211 23468899999 5555 665    57899999


Q ss_pred             cCCCC
Q 014154          372 QNGND  376 (430)
Q Consensus       372 ~~~~~  376 (430)
                      |+...
T Consensus       298 ~d~~g  302 (328)
T 3dsm_A          298 YSPQG  302 (328)
T ss_dssp             ECTTC
T ss_pred             ECCCC
Confidence            99873

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=1.6e-12  Score=124.53  Aligned_cols=316  Identities=12%  Similarity=0.107  Sum_probs=203.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCC--CCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPL--NGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~--~~~~~~~~~   92 (430)
                      ..+++...+++|.++|..++     +++.++.....   ...+.+  +|||++|++++.++.|.+||+.  +++.+..+.
T Consensus       168 ~~~V~~~~~~~V~viD~~t~-----~v~~~i~~g~~---p~~v~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~  237 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTY-----EIKTVLDTGYA---VHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK  237 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTC-----CEEEEEECSSC---EEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCC-----eEEEEEeCCCC---ccceEE--CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence            45667778899999999987     67766653322   223445  7899999999999999999995  676666554


Q ss_pred             ccCCCCCCCCCCceEEEEEee---cCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC--------
Q 014154           93 NAGDSGAQPEDDGIVGLHLFK---RQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA--------  161 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~--------  161 (430)
                      .         ......+.+.+   .+.      +-.+++....+.+.|++.....        .+....+..        
T Consensus       238 ~---------G~~P~~ia~s~~~~pDG------k~l~v~n~~~~~v~ViD~~t~~--------~~~~i~~~~~~~~~~~~  294 (567)
T 1qks_A          238 I---------GSEARSIETSKMEGWED------KYAIAGAYWPPQYVIMDGETLE--------PKKIQSTRGMTYDEQEY  294 (567)
T ss_dssp             C---------CSEEEEEEECCSTTCTT------TEEEEEEEETTEEEEEETTTCC--------EEEEEECCEECTTTCCE
T ss_pred             c---------CCCCceeEEccccCCCC------CEEEEEEccCCeEEEEECCCCc--------EEEEEeccccccccccc
Confidence            3         12334556652   122      0244455566888888743221        333322210        


Q ss_pred             --CCceEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeee--EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-C
Q 014154          162 --SGTIAFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-N  235 (430)
Q Consensus       162 --~~~i~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~  235 (430)
                        ...+..+..++++..+ +.....|.|.++|..+....  ..+...          .....+.|  +|++++|+++. .
T Consensus       295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~----------~~~~d~~~--~pdgr~~~va~~~  362 (567)
T 1qks_A          295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE----------RFLHDGGL--DGSHRYFITAANA  362 (567)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC----------SSEEEEEE--CTTSCEEEEEEGG
T ss_pred             cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc----------ccccCceE--CCCCCEEEEEeCC
Confidence              1256778888876554 44556799999999765322  222111          34667788  89999887765 5


Q ss_pred             CCcEEEEECCCCCcceEEEee-----cCCCeEEEEecCCCCEEE-EEe-CCCcEEEEEccC-------CeEEeeeeCCCC
Q 014154          236 DHQVRLYDTSAQRRPVMSFDF-----RETPIKAVAEEPDSFNIY-IGN-GSGDLASVDIRT-------GKLLGCFIGKCS  301 (430)
Q Consensus       236 dg~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~sp~~~~l~-~~~-~d~~i~iwd~~~-------~~~~~~~~~~~~  301 (430)
                      ++.|.++|+.+++ .+..+..     |.+.-..+ ++|++..++ ++. .++.|.++|..+       .+.+.++... .
T Consensus       363 sn~V~ViD~~t~k-l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~-g  439 (567)
T 1qks_A          363 RNKLVVIDTKEGK-LVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPAL-G  439 (567)
T ss_dssp             GTEEEEEETTTTE-EEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS-C
T ss_pred             CCeEEEEECCCCc-EEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecC-C
Confidence            7899999999865 3444443     22211122 588755554 443 468999999987       6778888764 3


Q ss_pred             CCeEEEEecCCCCeEEEEeC-------CCcEEEEECCCC-----cee-eEEEee-----ccccceEEeeeccccccc--c
Q 014154          302 GSIRSIARHPTLPIIASCGL-------DSYLRFWDIKTR-----QLL-SAVFLK-----QHLNEVVFDSAFADKEVA--N  361 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~~-------dg~i~iwd~~~~-----~~~-~~~~~~-----~~~~~~v~~~~~s~~g~~--~  361 (430)
                      ..-..+..+|++++|.+...       .++|.|||+.+.     ... ..+...     +.....+..+.|+|+|+.  +
T Consensus       440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  519 (567)
T 1qks_A          440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWF  519 (567)
T ss_dssp             SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEE
T ss_pred             CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEE
Confidence            34455789999999888763       358999999877     211 222110     011345789999999987  3


Q ss_pred             cc-C---CCCceEecCCCCCc
Q 014154          362 AA-A---DAPMLEIQNGNDTQ  378 (430)
Q Consensus       362 ~~-~---~d~~i~~~~~~~~~  378 (430)
                      +. +   .++.|.|+|.....
T Consensus       520 s~~~~~~~~~~i~v~D~~t~~  540 (567)
T 1qks_A          520 SVWNGKDQESALVVVDDKTLE  540 (567)
T ss_dssp             EEECCTTSCCEEEEEETTTTE
T ss_pred             EeecCCCCCCcEEEEECCCce
Confidence            32 1   47999998877643

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.64  E-value=5.7e-13  Score=116.17  Aligned_cols=241  Identities=7%  Similarity=-0.039  Sum_probs=167.1

Q ss_pred             CCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCC-CCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce
Q 014154           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (430)
Q Consensus        12 ~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~   90 (430)
                      .|...+++++.++.|.+||..++     +.+-++..+. ..+..  ...  .|+|++|+  +.++.|..||. +|+.+..
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG-----~~~w~~~~~~~~~~~~--~~~--~pdG~ilv--s~~~~V~~~d~-~G~~~W~   70 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTK-----EIVWEYPLEKGWECNS--VAA--TKAGEILF--SYSKGAKMITR-DGRELWN   70 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTT-----EEEEEEECCTTCCCCE--EEE--CTTSCEEE--ECBSEEEEECT-TSCEEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCC-----eEEEEeCCCccCCCcC--eEE--CCCCCEEE--eCCCCEEEECC-CCCEEEE
Confidence            45677899999999999999777     7777776654 23333  334  67888887  34677888887 6664443


Q ss_pred             eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (430)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~  170 (430)
                      +..                                                                  .....+.++.+
T Consensus        71 ~~~------------------------------------------------------------------~~~~~~~~~~~   84 (276)
T 3no2_A           71 IAA------------------------------------------------------------------PAGCEMQTARI   84 (276)
T ss_dssp             EEC------------------------------------------------------------------CTTCEEEEEEE
T ss_pred             EcC------------------------------------------------------------------CCCccccccEE
Confidence            321                                                                  00123445667


Q ss_pred             cCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc
Q 014154          171 DISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR  249 (430)
Q Consensus       171 ~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  249 (430)
                      .++++++++.+. ++.|..+|. +++.++++.......   .+......+++  .++++++++...++.|..||.. ++.
T Consensus        85 ~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~---~~~~~~~~v~~--~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           85 LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE---RPHAQFRQINK--NKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCS---SGGGSCSCCEE--CTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC---cccccccCceE--CCCCCEEEEecCCCEEEEECCC-CCE
Confidence            788888888776 777777775 677766654321100   01123445566  7899999999999999999998 664


Q ss_pred             ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC-----CCCeEEEEecCCCCeEEEEeCC--
Q 014154          250 PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-----SGSIRSIARHPTLPIIASCGLD--  322 (430)
Q Consensus       250 ~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----~~~v~~i~~~~~~~~l~s~~~d--  322 (430)
                       +..+..+ ....++.+.++++++++++.++.|..+|..+++.+.++....     -..+..+...++|.++++....  
T Consensus       158 -~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~  235 (276)
T 3no2_A          158 -LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHD  235 (276)
T ss_dssp             -EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTC
T ss_pred             -EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcc
Confidence             6666654 456677888999999999888899999999999999886431     1237888899999988877421  


Q ss_pred             ------CcEEEEEC-CCCceeeEE
Q 014154          323 ------SYLRFWDI-KTRQLLSAV  339 (430)
Q Consensus       323 ------g~i~iwd~-~~~~~~~~~  339 (430)
                            +..+++.+ .+++.+..+
T Consensus       236 ~~~~~~~~~~~~~~~~~g~~~W~~  259 (276)
T 3no2_A          236 REAGKGKHPQLVEIDSEGKVVWQL  259 (276)
T ss_dssp             TTGGGSCCCSEEEECTTSBEEEEE
T ss_pred             ccccccCCceEEEECCCCCEEEEe
Confidence                  23356665 567777764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.63  E-value=1.7e-11  Score=108.15  Aligned_cols=276  Identities=7%  Similarity=0.016  Sum_probs=175.8

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      ..++..  .|+|+++++...++.|.+||.. ++. ..+...      .....+.++.+-+ ..       ..+++...++
T Consensus        17 ~~~i~~--d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~------~~~~~~~~i~~~~-~g-------~l~v~~~~~~   78 (299)
T 2z2n_A           17 PYGITV--SDKGKVWITQHKANMISCINLD-GKI-TEYPLP------TPDAKVMCLTISS-DG-------EVWFTENAAN   78 (299)
T ss_dssp             EEEEEE--CTTSCEEEEETTTTEEEEECTT-CCE-EEEECS------STTCCEEEEEECT-TS-------CEEEEETTTT
T ss_pred             ccceEE--CCCCCEEEEecCCCcEEEEcCC-CCe-EEecCC------cccCceeeEEECC-CC-------CEEEeCCCCC
Confidence            445555  5678766666667899999987 543 222210      0123454444432 21       2444444466


Q ss_pred             eeEEEEeeecCccccCCCcceEEeeec-CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  212 (430)
                      .+..++..          +.+..+... ....+..+++++++.++++...++.|.+||. +++........        .
T Consensus        79 ~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~--------~  139 (299)
T 2z2n_A           79 KIGRITKK----------GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN--------K  139 (299)
T ss_dssp             EEEEECTT----------SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS--------T
T ss_pred             eEEEECCC----------CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC--------C
Confidence            67666532          234444432 3457889999999988887777889999998 54433221110        0


Q ss_pred             CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (430)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  292 (430)
                      ...+..+++  .+++.++++...++.|..||. ++......+..+...+.+++++++++++++...++.|.+||. +++.
T Consensus       140 ~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          140 GSYPSFITL--GSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             TCCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             CCCCceEEE--cCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence            145788888  788888777767789999999 544211112333456889999999987776666889999999 7665


Q ss_pred             Eee-eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEe
Q 014154          293 LGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEI  371 (430)
Q Consensus       293 ~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~  371 (430)
                      ... +..+ ...+.+++++++|.++++...++.|.+||. +++ +..+.+..+ ...+.++++ ++|.+..+...+.+..
T Consensus       216 ~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~~~~l~~  290 (299)
T 2z2n_A          216 TEFKIPTP-NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIK-SAEPHGICF-DGETIWFAMECDKIGK  290 (299)
T ss_dssp             EEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSS-SCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred             EEEECCCC-CCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCC-CCccceEEe-cCCCEEEEecCCcEEE
Confidence            332 2223 467899999999987666657789999998 454 333323333 234688899 8998844433566666


Q ss_pred             cCCC
Q 014154          372 QNGN  375 (430)
Q Consensus       372 ~~~~  375 (430)
                      ++..
T Consensus       291 ~~~~  294 (299)
T 2z2n_A          291 LTLI  294 (299)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            6543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.63  E-value=1.8e-12  Score=124.12  Aligned_cols=290  Identities=13%  Similarity=0.082  Sum_probs=187.5

Q ss_pred             ceeeecCCCceEEEEcc--CCCCCcceeeeecCCCCCCcceeeeeecCC----CCCceeEEee-cCCeEEEecCCCCccc
Q 014154           16 RALTFDSLGLIKVIEAR--GEHGGVPKVVERWGDPHSSNCVLAASIDDS----QNDPLLAVAR-KNGLTDILNPLNGDLR   88 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----p~g~~l~~g~-~dg~i~iwd~~~~~~~   88 (430)
                      .+++++.||.|.+||+.  +.     +.+.++.....   ...+.+  +    |||++++++. .+++|.|+|..+.+++
T Consensus       210 ~lyv~~~dg~V~viD~~~~t~-----~~v~~i~~G~~---P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~  279 (567)
T 1qks_A          210 YLFVIGRDGKVNMIDLWMKEP-----TTVAEIKIGSE---ARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK  279 (567)
T ss_dssp             EEEEEETTSEEEEEETTSSSC-----CEEEEEECCSE---EEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred             EEEEEcCCCeEEEEECCCCCC-----cEeEEEecCCC---CceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence            56778889999999995  44     45555543322   234444  5    6899888865 4599999999888887


Q ss_pred             ceeeccC--CCCCCCC-CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154           89 VAISNAG--DSGAQPE-DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (430)
Q Consensus        89 ~~~~~~~--~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i  165 (430)
                      ..+....  ......+ ...+..+...+...       ..++.....|.+.+.+....        ..+.+..+......
T Consensus       280 ~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~-------~~vv~~~~~g~v~~vd~~~~--------~~~~v~~i~~~~~~  344 (567)
T 1qks_A          280 KIQSTRGMTYDEQEYHPEPRVAAILASHYRP-------EFIVNVKETGKILLVDYTDL--------NNLKTTEISAERFL  344 (567)
T ss_dssp             EEEECCEECTTTCCEESCCCEEEEEECSSSS-------EEEEEETTTTEEEEEETTCS--------SEEEEEEEECCSSE
T ss_pred             EEEeccccccccccccCCCceEEEEEcCCCC-------EEEEEecCCCeEEEEecCCC--------ccceeeeeeccccc
Confidence            7765311  0000001 11344444433322       34555556677777664321        13344444556678


Q ss_pred             EEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCC-CCCCCCCCcCCcceeEEEEeecCCCC-EEEEEe-CCCcEEE
Q 014154          166 AFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKP-PPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGT-NDHQVRL  241 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~-~dg~i~i  241 (430)
                      ..+.|+|++++++++. .++.|.++|+.+++.+..+.. ..     ..|+.  ..+.|. +|++. ..+++. .++.|.+
T Consensus       345 ~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~-----~Phpg--~g~~~~-~p~~g~v~~t~~~g~~~Vsv  416 (567)
T 1qks_A          345 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ-----TPHPG--RGANFV-HPTFGPVWATSHMGDDSVAL  416 (567)
T ss_dssp             EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-----SBCCT--TCEEEE-ETTTEEEEEEEBSSSSEEEE
T ss_pred             cCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc-----CCCCc--cceeeE-CCCCCcEEEeCCCCCCeEEE
Confidence            8899999999987765 578999999999987766543 21     12222  122332 67644 444543 4689999


Q ss_pred             EECCCC------CcceEEEeecCCCeEEEEecCCCCEEEEEeC-------CCcEEEEEccCC-----eE-Eeeee-----
Q 014154          242 YDTSAQ------RRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-------SGDLASVDIRTG-----KL-LGCFI-----  297 (430)
Q Consensus       242 wd~~~~------~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-------d~~i~iwd~~~~-----~~-~~~~~-----  297 (430)
                      +|....      .+.+..+......-..+..+|++++|++...       .+.|.+||+.+.     .. ...+.     
T Consensus       417 id~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~  496 (567)
T 1qks_A          417 IGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA  496 (567)
T ss_dssp             EECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred             ecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence            999862      2346666654334355788999999998763       358999999876     21 12221     


Q ss_pred             ---CCCCCCeEEEEecCCCCeEEEEe-----CCCcEEEEECCCCceeeEE
Q 014154          298 ---GKCSGSIRSIARHPTLPIIASCG-----LDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       298 ---~~~~~~v~~i~~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~  339 (430)
                         .. ...+..+.|+|+|+++..+.     .++.|.|+|.++++++.++
T Consensus       497 ~~~~~-~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i  545 (567)
T 1qks_A          497 GITEG-QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI  545 (567)
T ss_dssp             TCCSS-CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred             ccCCC-CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence               11 35789999999999877663     3789999999999998874

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.61  E-value=7.5e-13  Score=119.15  Aligned_cols=257  Identities=10%  Similarity=0.007  Sum_probs=164.4

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      +|++..++..+.++.++.|   .++....+...        ...+.++.+ ....       ..++++..++.+.+|+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--------~~~~~~~~~-~~~g-------~l~~~~~~~~~i~~~d~~   74 (333)
T 2dg1_A           14 SGKSNSAVPIISESELQTI---TAEPWLEISKK--------GLQLEGLNF-DRQG-------QLFLLDVFEGNIFKINPE   74 (333)
T ss_dssp             CGGGGCSSCCCCGGGSCEE---ECEEEEEEESS--------CCCEEEEEE-CTTS-------CEEEEETTTCEEEEECTT
T ss_pred             cCCccceeEEeecccCccc---ccceeEEEecc--------CccccCcEE-CCCC-------CEEEEECCCCEEEEEeCC
Confidence            5556667777778889999   23333333321        123444444 3222       344567778888888643


Q ss_pred             ecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCccee
Q 014154          142 VTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFT  217 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~  217 (430)
                      .         +.+..+.......+.+++++++++++++...+    +.|.+||..++.....+....       ....+.
T Consensus        75 ~---------~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~  138 (333)
T 2dg1_A           75 T---------KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS-------TAYCID  138 (333)
T ss_dssp             T---------CCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS-------SCCCEE
T ss_pred             C---------CcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc-------cCCccc
Confidence            2         23444433455779999999999888776666    689999998766543332111       114588


Q ss_pred             EEEEeecCCCCEEEEEeC------CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-eCCCcEEEEEccC-
Q 014154          218 SAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRT-  289 (430)
Q Consensus       218 ~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~-  289 (430)
                      .+++  +|++.++++...      .+.|..||..++.  +..+..+...+..++|+|+++.|+++ +.++.|.+||+.+ 
T Consensus       139 ~i~~--d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~  214 (333)
T 2dg1_A          139 DMVF--DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD  214 (333)
T ss_dssp             EEEE--CTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ceEE--CCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence            8999  889987776653      3567777766433  23333333467899999999866554 4578999999964 


Q ss_pred             CeEEee--------eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc---cceEEeeeccccc
Q 014154          290 GKLLGC--------FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL---NEVVFDSAFADKE  358 (430)
Q Consensus       290 ~~~~~~--------~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g  358 (430)
                      +..+..        +.+  ...+..++++++|.++++...++.|.+||. +++.+..+......   ...+.+++|+||+
T Consensus       215 g~~~~~~~~~~~~~~~~--~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg  291 (333)
T 2dg1_A          215 GVTIQPFGATIPYYFTG--HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGT  291 (333)
T ss_dssp             SSSEEEEEEEEEEECCS--SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             CcCcccccceEEEecCC--CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCC
Confidence            332211        112  136788999999998888778899999998 56766664332110   0146889999997


Q ss_pred             cc
Q 014154          359 VA  360 (430)
Q Consensus       359 ~~  360 (430)
                      ..
T Consensus       292 ~~  293 (333)
T 2dg1_A          292 NQ  293 (333)
T ss_dssp             CE
T ss_pred             CE
Confidence            54

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=2.9e-13  Score=134.73  Aligned_cols=198  Identities=11%  Similarity=0.030  Sum_probs=136.6

Q ss_pred             EEEEEcCCCCEEEEEeCCCe----------------EEEEECCCCeee--EeeCCCCCCCCCCcCCcceeEEEEeecCCC
Q 014154          166 AFSKVDISEKFSLFGGKGVE----------------VNVWDLDKCEKI--WTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~----------------i~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  227 (430)
                      ..++|+|+++.|+.++.++.                |++|++.++...  ..+....       +...+..+.|  +|++
T Consensus       174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~-------~~~~~~~~~~--SpDg  244 (710)
T 2xdw_A          174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD-------EPKWMGGAEL--SDDG  244 (710)
T ss_dssp             CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEE--CTTS
T ss_pred             ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC-------CCeEEEEEEE--cCCC
Confidence            34677888888877776655                999999876521  2222211       1245678888  8999


Q ss_pred             CEEEEEeC-----CCcEEEEECCC------CCcceEEEeecCCCeEEEEecCCCCEEEEEeCC----CcEEEEEccCCeE
Q 014154          228 RKFVAGTN-----DHQVRLYDTSA------QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTGKL  292 (430)
Q Consensus       228 ~~l~s~~~-----dg~i~iwd~~~------~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~~  292 (430)
                      ++|+.++.     +..|++||+.+      +......+..+...+.. .|+|+|..|+..+..    +.|.+||+.++..
T Consensus       245 ~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~  323 (710)
T 2xdw_A          245 RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE  323 (710)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred             CEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence            99888765     56899999976      43235666666666655 488999888777653    3599999987742


Q ss_pred             --EeeeeCCCC-CCeEEEEecCCCCeEEEEeCCCc--EEEEECCCCceeeEEEeeccccceEEeeeccccccc-c----c
Q 014154          293 --LGCFIGKCS-GSIRSIARHPTLPIIASCGLDSY--LRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-N----A  362 (430)
Q Consensus       293 --~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~----~  362 (430)
                        ...+..+.. ..+..+.|++++.++++...|+.  |++|++.+++.+..+  ..+ ...+..++++|++.. +    +
T Consensus       324 ~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l--~~~-~~~v~~~~~s~d~~~l~~~~ss  400 (710)
T 2xdw_A          324 SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF--PLE-VGSVVGYSGQKKDTEIFYQFTS  400 (710)
T ss_dssp             GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEE--CCC-SSEEEEEECCTTCSEEEEEEEC
T ss_pred             ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEec--CCC-CceEEEEecCCCCCEEEEEEeC
Confidence              234444423 36888999988888888888884  667787778876663  344 455688999999864 3    2


Q ss_pred             cCCCCceEecCCCC
Q 014154          363 AADAPMLEIQNGND  376 (430)
Q Consensus       363 ~~~d~~i~~~~~~~  376 (430)
                      ....+.+..|+...
T Consensus       401 ~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          401 FLSPGIIYHCDLTK  414 (710)
T ss_dssp             SSCCCEEEEEETTS
T ss_pred             CCCCCEEEEEECCC
Confidence            33567889998765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.60  E-value=3.2e-13  Score=117.79  Aligned_cols=214  Identities=9%  Similarity=0.082  Sum_probs=161.3

Q ss_pred             CceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC--CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154          123 SRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS--GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (430)
Q Consensus       123 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  200 (430)
                      ...+++++.++.+.+|+.+..         .+ +|.....  ..+.++.++|++++|+  +.++.|..||. +++.++++
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG---------~~-~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~   71 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTK---------EI-VWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI   71 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTT---------EE-EEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCC---------eE-EEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence            357888888999999985322         22 4665544  3688999999999888  45778999999 89999988


Q ss_pred             CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcceEEEeec------CCCeEEEEecCCCCEE
Q 014154          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNI  273 (430)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l  273 (430)
                      .....        ..+.++.+  .++++++++.+. ++.|..+|.. ++ .+..+...      ......+++.++|+++
T Consensus        72 ~~~~~--------~~~~~~~~--~~dG~~lv~~~~~~~~v~~vd~~-Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l  139 (276)
T 3no2_A           72 AAPAG--------CEMQTARI--LPDGNALVAWCGHPSTILEVNMK-GE-VLSKTEFETGIERPHAQFRQINKNKKGNYL  139 (276)
T ss_dssp             ECCTT--------CEEEEEEE--CTTSCEEEEEESTTEEEEEECTT-SC-EEEEEEECCSCSSGGGSCSCCEECTTSCEE
T ss_pred             cCCCC--------ccccccEE--CCCCCEEEEecCCCCEEEEEeCC-CC-EEEEEeccCCCCcccccccCceECCCCCEE
Confidence            76321        34677788  789999999887 7888888864 34 34444421      1234566788999999


Q ss_pred             EEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec---cccceEE
Q 014154          274 YIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ---HLNEVVF  350 (430)
Q Consensus       274 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~v~  350 (430)
                      ++...++.|..||.. |+.+.++...  ..+.++.+.+++.++++++.++.|..+|..+|+.+.++.-..   ..-..+.
T Consensus       140 v~~~~~~~v~~~d~~-G~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~  216 (276)
T 3no2_A          140 VPLFATSEVREIAPN-GQLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVA  216 (276)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEE
T ss_pred             EEecCCCEEEEECCC-CCEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccc
Confidence            999999999999997 9999999874  456778889999999999888899999999999998864211   1112357


Q ss_pred             eeeccccccccccC
Q 014154          351 DSAFADKEVANAAA  364 (430)
Q Consensus       351 ~~~~s~~g~~~~~~  364 (430)
                      .++..++|.++.++
T Consensus       217 ~~~~~~~G~i~v~~  230 (276)
T 3no2_A          217 QLFPLQNGGLYICN  230 (276)
T ss_dssp             EEEECTTSCEEEEE
T ss_pred             cceEcCCCCEEEEe
Confidence            88888899883333

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.60  E-value=8.2e-14  Score=137.71  Aligned_cols=196  Identities=9%  Similarity=-0.023  Sum_probs=135.3

Q ss_pred             EEEEc--CCCCE-EEEEeC-CCeEEEEECC--C-CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---
Q 014154          167 FSKVD--ISEKF-SLFGGK-GVEVNVWDLD--K-CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---  236 (430)
Q Consensus       167 ~~~~~--~~~~~-l~~~~~-d~~i~~~d~~--~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---  236 (430)
                      ...|+  |+++. |+.++. +..|+++++.  . +. ...+.....    ..+...+..++|  +|||+.|++++.+   
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~----~~~~~~~~~~~~--spDg~~l~~~~~~~~~  153 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA----VGGGLRWADPVL--LPERGEVWCMAEEFTG  153 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCC----STTCEEEEEEEE--ETTTTEEEEEEEEECS
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCcc----CCCCccccCcEE--CCCCCEEEEEEecccC
Confidence            44454  99988 776554 5667777775  2 33 333332110    001256788999  8999999998877   


Q ss_pred             -------CcEEEEECCCC-----CcceEEEe-ecCCCeEEEEecCCCCEEEEEeCC--------CcEEEEEcc-CC---e
Q 014154          237 -------HQVRLYDTSAQ-----RRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGS--------GDLASVDIR-TG---K  291 (430)
Q Consensus       237 -------g~i~iwd~~~~-----~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d--------~~i~iwd~~-~~---~  291 (430)
                             ..|++||+.+.     .. ...+. .+...+..++|||||++|+.++.+        ..|++||+. ++   +
T Consensus       154 ~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~  232 (662)
T 3azo_A          154 EGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD  232 (662)
T ss_dssp             SSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred             CCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence                   58999999872     22 34555 555678889999999999987755        379999998 57   4


Q ss_pred             EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC--cEEEEECCCCceeeEEEeeccccce--------EEeeeccccccc-
Q 014154          292 LLGCFIGKCSGSIRSIARHPTLPIIASCGLDS--YLRFWDIKTRQLLSAVFLKQHLNEV--------VFDSAFADKEVA-  360 (430)
Q Consensus       292 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~--------v~~~~~s~~g~~-  360 (430)
                      ......++ ...+..+.|+|||+++++++.++  .|++||+.+++....  ..++ ...        +..++|+|++.+ 
T Consensus       233 ~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l--~~~~-~~~~~p~w~~~~~~~~~~~~~~~~  308 (662)
T 3azo_A          233 TRTLLGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQL--CRRE-EEFAGPLWTPGMRWFAPLANGLIA  308 (662)
T ss_dssp             EEEEEEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEES--SCCS-SBSSCCCCSTTCCSEEECTTSCEE
T ss_pred             cEEeCCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeec--cccc-ccccCccccccCceEeEeCCCEEE
Confidence            44444444 67899999999999888888888  677777767765543  2222 111        356788899988 


Q ss_pred             cccCCCCceEecCCC
Q 014154          361 NAAADAPMLEIQNGN  375 (430)
Q Consensus       361 ~~~~~d~~i~~~~~~  375 (430)
                      +++.. +.+++|..+
T Consensus       309 ~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          309 VVHGK-GAAVLGILD  322 (662)
T ss_dssp             EEEBS-SSCEEEEEE
T ss_pred             EEEEc-CccEEEEEE
Confidence            66666 899999443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.59  E-value=7.4e-13  Score=119.87  Aligned_cols=242  Identities=13%  Similarity=0.076  Sum_probs=150.5

Q ss_pred             CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC---CeeEEEEeeecCccccCC
Q 014154           74 NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---GKASMRSIEVTKVSAESS  150 (430)
Q Consensus        74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~  150 (430)
                      ++.|.+||+.+++.. .+.            .+....|.+..        ..++....+   +...||.+....      
T Consensus        42 ~~~l~~~d~~~~~~~-~l~------------~~~~~~~SpDg--------~~la~~~~~~~~~~~~l~~~~~~~------   94 (347)
T 2gop_A           42 ENTIVIENLKNNARR-FIE------------NATMPRISPDG--------KKIAFMRANEEKKVSEIWVADLET------   94 (347)
T ss_dssp             EEEEEEEETTTCCEE-EEE------------SCEEEEECTTS--------SEEEEEEEETTTTEEEEEEEETTT------
T ss_pred             cceEEEEeCCCCceE-Ecc------------cCCCeEECCCC--------CEEEEEEeccCCCcceEEEEECCC------
Confidence            677999999877632 221            23334443332        245544432   444455443211      


Q ss_pred             CcceEEeeecCCCceEEEEEcCCCCEEEEEeCC---------------------------CeEEEEECCCCeeeEeeCCC
Q 014154          151 CSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG---------------------------VEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       151 ~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------~~i~~~d~~~~~~~~~~~~~  203 (430)
                      .....+...  .. +..++|+|+++.|+.++.+                           ..|++||+.+++.+..+.. 
T Consensus        95 g~~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-  170 (347)
T 2gop_A           95 LSSKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-  170 (347)
T ss_dssp             TEEEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-
T ss_pred             CceEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-
Confidence            112333332  23 8899999999999887642                           5799999988876333322 


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-------cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-------QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~  276 (430)
                      .          .+..+.|  +|++ +++++..+.       ...||.+.+ .. ...+..+ ..+..+  +|+|++|+.+
T Consensus       171 ~----------~~~~~~~--spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~-~~~l~~~-~~~~~~--spdg~~l~~~  232 (347)
T 2gop_A          171 P----------RFSSGIW--HRDK-IVVNVPHREIIPQYFKFWDIYIWED-GK-EEKMFEK-VSFYAV--DSDGERILLY  232 (347)
T ss_dssp             E----------TTCEEEE--ETTE-EEEEEECCCSSCCSSCCEEEEEEET-TE-EEEEEEE-ESEEEE--EECSSCEEEE
T ss_pred             C----------CcccccC--CCCe-EEEEEecccccccccccccEEEeCC-Cc-eEEeccC-cceeeE--CCCCCEEEEE
Confidence            1          2567788  7899 777776542       334444433 32 3444444 455554  9999998887


Q ss_pred             eCC--------CcEEEEEccCCeEEeeeeCCCCCCeEE-EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccc
Q 014154          277 NGS--------GDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE  347 (430)
Q Consensus       277 ~~d--------~~i~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  347 (430)
                      +.+        ..|.+||  +++.......+ ...+.. +.|+ ++ ++++++.++.++|| +.+++....  . .+ ..
T Consensus       233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~--~-~~-~~  302 (347)
T 2gop_A          233 GKPEKKYMSEHNKLYIYD--GKEVMGILDEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI--A-KG-RH  302 (347)
T ss_dssp             ECCSSSCCCSSCEEEEEC--SSCEEESSTTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE--E-CS-SS
T ss_pred             EccccCCccccceEEEEC--CCceEeccccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE--e-cC-CC
Confidence            754        3688888  66655444444 677886 9999 88 89999999999999 876665332  2 23 45


Q ss_pred             eEEeeeccccccccccCCCCce-EecCCC
Q 014154          348 VVFDSAFADKEVANAAADAPML-EIQNGN  375 (430)
Q Consensus       348 ~v~~~~~s~~g~~~~~~~d~~i-~~~~~~  375 (430)
                      .+.+++|+| .-+++++.++.. .+|..+
T Consensus       303 ~v~~~~~s~-~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          303 WIMGFDVDE-IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred             eEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence            578999999 444555555544 666554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.59  E-value=1.1e-12  Score=120.94  Aligned_cols=273  Identities=7%  Similarity=-0.056  Sum_probs=150.2

Q ss_pred             CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCC
Q 014154           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPED  103 (430)
Q Consensus        24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  103 (430)
                      ..|.+|++.++     +... +..+.... .....|  +|||++|+.++.++.|.+||+.+++..........  +.+..
T Consensus        60 ~~l~~~d~~~~-----~~~~-l~~~~~~~-~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~g  128 (396)
T 3c5m_A           60 RNYYLLNLETQ-----QAVQ-LTEGKGDN-TFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE--WKGYG  128 (396)
T ss_dssp             CEEEEEETTTT-----EEEE-CCCSSCBC-TTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT--EEEEE
T ss_pred             ceEEEEECCCC-----cEEE-eecCCCCc-cccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc--cCCCC
Confidence            36778888875     3332 33222221 111345  88999999999999999999987765443332100  00000


Q ss_pred             CceEEEEEeecCcc-------cccc-cCceEEEE-----ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154          104 DGIVGLHLFKRQRE-------ESSS-RSRTLLTC-----TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (430)
Q Consensus       104 ~~i~~~~~~~~~~~-------~~~~-~~~~~~~~-----~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~  170 (430)
                      .   .+.+......       ..-+ ....++..     .....+.+|++...         ...... .+...+..+.|
T Consensus       129 ~---~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g---------~~~~~~-~~~~~~~~~~~  195 (396)
T 3c5m_A          129 T---WVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG---------ELEVIH-QDTAWLGHPIY  195 (396)
T ss_dssp             E---EEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC---------CEEEEE-EESSCEEEEEE
T ss_pred             C---EEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC---------cEEeec-cCCcccccceE
Confidence            0   0000000000       0000 00111111     12223444443211         111111 23456788999


Q ss_pred             cC-CCCEEEEEeCC------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-----Cc
Q 014154          171 DI-SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQ  238 (430)
Q Consensus       171 ~~-~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~  238 (430)
                      +| ++..|+..+.+      ..|.+||+..+... .+..+..       ...+..++|  +|+++.|+.++.+     +.
T Consensus       196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~-------~~~~~~~~~--spdg~~l~~~~~~~~~~~~~  265 (396)
T 3c5m_A          196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAE-------GESCTHEFW--IPDGSAMAYVSYFKGQTDRV  265 (396)
T ss_dssp             ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCT-------TEEEEEEEE--CTTSSCEEEEEEETTTCCEE
T ss_pred             CCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCC-------CccccceEE--CCCCCEEEEEecCCCCccce
Confidence            99 78877766543      36888898755432 2221110       134778899  8999987776544     44


Q ss_pred             EEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEe----------------CCCcEEEEEccCCeEEeeeeCCCC
Q 014154          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGN----------------GSGDLASVDIRTGKLLGCFIGKCS  301 (430)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~----------------~d~~i~iwd~~~~~~~~~~~~~~~  301 (430)
                      |++||+.+++.  ..+.... ... +.|+| +++++++++                .+..|++||+.+++.. .+..+ .
T Consensus       266 l~~~d~~~g~~--~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~  339 (396)
T 3c5m_A          266 IYKANPETLEN--EEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH-S  339 (396)
T ss_dssp             EEEECTTTCCE--EEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC-C
T ss_pred             EEEEECCCCCe--EEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC-C
Confidence            99999987652  2222221 233 88999 999888765                3478999999887753 34443 2


Q ss_pred             C-----------CeEEEEecCCCCeEEEEeC-CCc--EEEEECCCCcee
Q 014154          302 G-----------SIRSIARHPTLPIIASCGL-DSY--LRFWDIKTRQLL  336 (430)
Q Consensus       302 ~-----------~v~~i~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~  336 (430)
                      .           .+..+.|+|+|+.|+.++. ++.  |+++++.+++..
T Consensus       340 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~  388 (396)
T 3c5m_A          340 TSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH  388 (396)
T ss_dssp             CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred             CccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence            2           2567889999998877764 444  455555555443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.59  E-value=1.4e-12  Score=115.38  Aligned_cols=220  Identities=8%  Similarity=-0.073  Sum_probs=149.1

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  204 (430)
                      .+++...++.+..|+..         .+ +..+. .....+.+++++++++++++...++.|.+||..+++.........
T Consensus        42 l~~~~~~~~~i~~~~~~---------~~-~~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~  110 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDD---------GQ-LSPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE  110 (296)
T ss_dssp             EEEEEGGGTEEEEEETT---------SC-EEEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred             EEEEeCCCCEEEEEECC---------CC-eEEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence            56777788888888743         12 44554 345678999999999988777677899999998776543322111


Q ss_pred             CCCCCCcCCcceeEEEEeecCCCCEEEEEeC-----------------CCcEEEEECCCCCcceEEEeecCCCeEEEEec
Q 014154          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (430)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s  267 (430)
                      ..     ....+..+++  +|+|+++++...                 .+.|..++.. +.  +..+..+......++|+
T Consensus       111 ~~-----~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s  180 (296)
T 3e5z_A          111 GK-----KLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNGLAFL  180 (296)
T ss_dssp             TE-----ECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEEEEEC
T ss_pred             CC-----CCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCccEEEC
Confidence            10     0134677888  889998887321                 2456666554 22  44455556678999999


Q ss_pred             CCCCEEEEEeCCCcEEEEEcc-CCeE---EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec
Q 014154          268 PDSFNIYIGNGSGDLASVDIR-TGKL---LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ  343 (430)
Q Consensus       268 p~~~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  343 (430)
                      |+++.|++.+.++.|.+||+. +++.   ...+..+ ...+.+++++++|.++++.  ++.|.+||.. ++.+..+  ..
T Consensus       181 ~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~--~~  254 (296)
T 3e5z_A          181 PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVE-PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV--LT  254 (296)
T ss_dssp             TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCS-SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE--EC
T ss_pred             CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC-CCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE--EC
Confidence            999988777778999999997 5554   3344223 5567889999999866665  7889999986 7777764  33


Q ss_pred             cccceEEeeec-cccccc-cccCCCCceEecCC
Q 014154          344 HLNEVVFDSAF-ADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       344 ~~~~~v~~~~~-s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      +..  +.+++| +|+++. .+++.+ .+.-++.
T Consensus       255 ~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~  284 (296)
T 3e5z_A          255 PQT--TSNLCFGGPEGRTLYMTVST-EFWSIET  284 (296)
T ss_dssp             SSC--CCEEEEESTTSCEEEEEETT-EEEEEEC
T ss_pred             CCC--ceeEEEECCCCCEEEEEcCC-eEEEEEc
Confidence            422  688899 588876 444444 3433333

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=7.8e-13  Score=115.19  Aligned_cols=223  Identities=7%  Similarity=-0.091  Sum_probs=151.2

Q ss_pred             ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCC
Q 014154          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (430)
Q Consensus       130 ~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  209 (430)
                      ..++.+.+++....         ....+.......+.+++++++++++++.. ++.|.+||....... .+...      
T Consensus        43 ~~~~~i~~~~~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~------  105 (270)
T 1rwi_B           43 GMYGRVVKLATGST---------GTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFD------  105 (270)
T ss_dssp             SSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCC------
T ss_pred             CCCCcEEEecCCCc---------ccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecC------
Confidence            55667777653211         12222222234678899999988665555 889999998764432 22111      


Q ss_pred             CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (430)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~  289 (430)
                        ....+..+++  .+++.++++...++.|.+|+..+... ..........+.+++++|+++++++...++.|.+||...
T Consensus       106 --~~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          106 --GLNYPEGLAV--DTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             --SCSSEEEEEE--CTTCCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             --CcCCCcceEE--CCCCCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence              1145788899  78888877777788999998765332 221222234678899999998777766788999999987


Q ss_pred             CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCc
Q 014154          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPM  368 (430)
Q Consensus       290 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~  368 (430)
                      .........+ ...+.+++++++|.++++...++.|.+|+.........  ...+. ..+.+++++++|.+ ++...++.
T Consensus       181 ~~~~~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~--~~~~~-~~p~~i~~~~~g~l~v~~~~~~~  256 (270)
T 1rwi_B          181 NNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVL--PFTGL-NTPLAVAVDSDRTVYVADRGNDR  256 (270)
T ss_dssp             CCEEECCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEEC--CCCSC-SCEEEEEECTTCCEEEEEGGGTE
T ss_pred             CceEeecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceee--ccCCC-CCceeEEECCCCCEEEEECCCCE
Confidence            6654433333 36789999999997777777788999999876543321  11221 34689999999988 88888999


Q ss_pred             eEecCCCCCc
Q 014154          369 LEIQNGNDTQ  378 (430)
Q Consensus       369 i~~~~~~~~~  378 (430)
                      |++|+....+
T Consensus       257 v~~~~~~~~~  266 (270)
T 1rwi_B          257 VVKLTSLEHH  266 (270)
T ss_dssp             EEEECCCGGG
T ss_pred             EEEEcCCCcc
Confidence            9999987644

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.57  E-value=5.7e-12  Score=113.33  Aligned_cols=255  Identities=11%  Similarity=0.035  Sum_probs=157.7

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~   96 (430)
                      ++....++.++.|  ..      .....+..+...  .....+  +|+|++++++..++.|.+||..+++.......   
T Consensus        20 ~~~~~~~~~~~~~--~~------~~~~~~~~~~~~--~~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~---   84 (333)
T 2dg1_A           20 AVPIISESELQTI--TA------EPWLEISKKGLQ--LEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPFVS---   84 (333)
T ss_dssp             SSCCCCGGGSCEE--EC------EEEEEEESSCCC--EEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEEC---
T ss_pred             eeEEeecccCccc--cc------ceeEEEeccCcc--ccCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC---
Confidence            4445678889999  22      333344444343  334455  57888777888899999999987765433211   


Q ss_pred             CCCCCCCCceEEEEEeecCcccccccCceEEEEccC----CeeEEEEeeecCccccCCCcceE-Eee-ecCCCceEEEEE
Q 014154           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK----GKASMRSIEVTKVSAESSCSTVK-SWN-VCASGTIAFSKV  170 (430)
Q Consensus        97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~i~-~~~-~~~~~~i~~~~~  170 (430)
                           ....+.++.+.+. .       ..+++...+    +.+.+|+....         .+. +.. ......+..+++
T Consensus        85 -----~~~~~~~i~~~~d-g-------~l~v~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~i~~  142 (333)
T 2dg1_A           85 -----HKANPAAIKIHKD-G-------RLFVCYLGDFKSTGGIFAATENGD---------NLQDIIEDLSTAYCIDDMVF  142 (333)
T ss_dssp             -----SSSSEEEEEECTT-S-------CEEEEECTTSSSCCEEEEECTTSC---------SCEEEECSSSSCCCEEEEEE
T ss_pred             -----CCCCcceEEECCC-C-------cEEEEeCCCCCCCceEEEEeCCCC---------EEEEEEccCccCCcccceEE
Confidence                 1235555555332 2       244444444    46666654321         222 221 123456889999


Q ss_pred             cCCCCEEEEEeC------CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCCCcEEEEE
Q 014154          171 DISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYD  243 (430)
Q Consensus       171 ~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd  243 (430)
                      +|+++++++...      .+.|..+|..+++.......          ...+..++|  +|+++.|+ +.+.++.|.+||
T Consensus       143 d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~i~~--~~dg~~l~v~~~~~~~i~~~d  210 (333)
T 2dg1_A          143 DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----------ISVANGIAL--STDEKVLWVTETTANRLHRIA  210 (333)
T ss_dssp             CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----------ESSEEEEEE--CTTSSEEEEEEGGGTEEEEEE
T ss_pred             CCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC----------CCcccceEE--CCCCCEEEEEeCCCCeEEEEE
Confidence            999987776553      35677777655443222111          134678889  89988654 445678999999


Q ss_pred             CCCCCcceEEE--------eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCC------CeEEEEe
Q 014154          244 TSAQRRPVMSF--------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG------SIRSIAR  309 (430)
Q Consensus       244 ~~~~~~~~~~~--------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~v~~i~~  309 (430)
                      +......+..+        .++ ..+..++++++|+++++...++.|.+||. +++.+..+..+ ..      .+.+++|
T Consensus       211 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~-~~~~g~~~~~~~~~~  287 (333)
T 2dg1_A          211 LEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP-GRDEGHMLRSTHPQF  287 (333)
T ss_dssp             ECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT-TGGGTCSCBCCEEEE
T ss_pred             ecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC-CCccccccCcceEEE
Confidence            96422112111        111 36788999999988887777899999998 56666666543 22      5899999


Q ss_pred             cCCCCeEEEEeCCC
Q 014154          310 HPTLPIIASCGLDS  323 (430)
Q Consensus       310 ~~~~~~l~s~~~dg  323 (430)
                      +|++..|+.++.++
T Consensus       288 ~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          288 IPGTNQLIICSNDI  301 (333)
T ss_dssp             CTTSCEEEEEEECG
T ss_pred             CCCCCEEEEEeCcc
Confidence            99987776665553

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.55  E-value=4.3e-12  Score=112.17  Aligned_cols=228  Identities=10%  Similarity=0.005  Sum_probs=148.2

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~   96 (430)
                      ++++..++.|..|+..+      . ...+..+...  ..++.+  +|+|+++++...++.|.+||..+++........  
T Consensus        43 ~~~~~~~~~i~~~~~~~------~-~~~~~~~~~~--~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~--  109 (296)
T 3e5z_A           43 IFSDVRQNRTWAWSDDG------Q-LSPEMHPSHH--QNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSF--  109 (296)
T ss_dssp             EEEEGGGTEEEEEETTS------C-EEEEESSCSS--EEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEE--
T ss_pred             EEEeCCCCEEEEEECCC------C-eEEEECCCCC--cceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc--
Confidence            66777888999999887      2 3344444444  445555  678887777766789999998666522111000  


Q ss_pred             CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (430)
Q Consensus        97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~  176 (430)
                                        ..                                           .....+..++++|++++
T Consensus       110 ------------------~~-------------------------------------------~~~~~~~~i~~d~~G~l  128 (296)
T 3e5z_A          110 ------------------EG-------------------------------------------KKLNSPNDVCLAPDGSL  128 (296)
T ss_dssp             ------------------TT-------------------------------------------EECCCCCCEEECTTSCE
T ss_pred             ------------------CC-------------------------------------------CCCCCCCCEEECCCCCE
Confidence                              00                                           00123445667777776


Q ss_pred             EEE----Ee-------------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154          177 SLF----GG-------------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (430)
Q Consensus       177 l~~----~~-------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  239 (430)
                      +++    |+             ..+.|..++.. ++... +....         ..+..++|  +|+++.+++.+.++.|
T Consensus       129 ~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~---------~~~~gi~~--s~dg~~lv~~~~~~~i  195 (296)
T 3e5z_A          129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSA-PIRDR---------VKPNGLAF--LPSGNLLVSDTGDNAT  195 (296)
T ss_dssp             EEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEE-EECCC---------SSEEEEEE--CTTSCEEEEETTTTEE
T ss_pred             EEECCccccccccccccccccCCCcEEEEECCC-CCEEE-eecCC---------CCCccEEE--CCCCCEEEEeCCCCeE
Confidence            665    22             13456666654 33322 22211         44678999  8999988777788999


Q ss_pred             EEEECCCCCcc---eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe-cCCCCe
Q 014154          240 RLYDTSAQRRP---VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR-HPTLPI  315 (430)
Q Consensus       240 ~iwd~~~~~~~---~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~-~~~~~~  315 (430)
                      .+|++......   ...+..+...+.+++++++|+++++.  ++.|.+||.. ++.+..+..+ .. +.+++| +|++..
T Consensus       196 ~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~-~~-~~~~~f~~~d~~~  270 (296)
T 3e5z_A          196 HRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTP-QT-TSNLCFGGPEGRT  270 (296)
T ss_dssp             EEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECS-SC-CCEEEEESTTSCE
T ss_pred             EEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECC-CC-ceeEEEECCCCCE
Confidence            99999722222   22333345567789999999866655  7889999986 7888888876 55 899999 689998


Q ss_pred             EEEEeCCCcEEEEECCCCceee
Q 014154          316 IASCGLDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       316 l~s~~~dg~i~iwd~~~~~~~~  337 (430)
                      |++++.++ +.-++.++.+..+
T Consensus       271 L~v~t~~~-l~~~~~~~~~~~~  291 (296)
T 3e5z_A          271 LYMTVSTE-FWSIETNVRGLEH  291 (296)
T ss_dssp             EEEEETTE-EEEEECSCCBCCC
T ss_pred             EEEEcCCe-EEEEEcccccccc
Confidence            88888764 6666776655443

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.55  E-value=3.1e-12  Score=111.34  Aligned_cols=241  Identities=7%  Similarity=-0.095  Sum_probs=152.1

Q ss_pred             eeeeeecCCCCCceeE-EeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154           54 VLAASIDDSQNDPLLA-VARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (430)
                      ..++.+  .|+|++++ +...++.|.+|+..++... .+..       .....+.++.+-+ .        +.++.+..+
T Consensus        26 p~~i~~--~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~~-------~~~~~p~~i~~~~-~--------g~l~v~~~~   86 (270)
T 1rwi_B           26 PSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTT-VLPF-------NGLYQPQGLAVDG-A--------GTVYVTDFN   86 (270)
T ss_dssp             EEEEEE--CTTCCEEEEECSSSCEEEEECC-----E-ECCC-------CSCCSCCCEEECT-T--------CCEEEEETT
T ss_pred             ccceEE--CCCCCEEEEccCCCCcEEEecCCCcccc-eEee-------CCcCCcceeEECC-C--------CCEEEEcCC
Confidence            445555  67788666 4467899999997554321 1110       0111233344322 2        234333336


Q ss_pred             CeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcC
Q 014154          133 GKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFT  212 (430)
Q Consensus       133 g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~  212 (430)
                      +.+.+++....         .+..+.......+..++++++++++++...++.|.+|+..+..........         
T Consensus        87 ~~i~~~d~~~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~---------  148 (270)
T 1rwi_B           87 NRVVTLAAGSN---------NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG---------  148 (270)
T ss_dssp             TEEEEECTTCS---------CCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCS---------
T ss_pred             CEEEEEeCCCc---------eEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeecccc---------
Confidence            77777764311         222232222356889999999987777777889999976554333221111         


Q ss_pred             CcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154          213 PTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (430)
Q Consensus       213 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  292 (430)
                      ...+.++++  +++++++++...++.|.+||...... ......+...+.+++++++|.++++...++.|.+||......
T Consensus       149 ~~~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          149 LNDPDGVAV--DNSGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCSCCCEEE--CTTCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             CCCceeEEE--eCCCCEEEEECCCCEEEEEecCCCce-EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            134678888  78888777777788999999886442 222222335788999999997777766788999999876544


Q ss_pred             EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154          293 LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       293 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  335 (430)
                      ......+ ...+.+++++++|.++++...++.|++|++...+.
T Consensus       226 ~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          226 TVLPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             EECCCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             eeeccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence            3322222 35789999999999888888999999999876554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=4.8e-11  Score=107.37  Aligned_cols=293  Identities=14%  Similarity=0.082  Sum_probs=179.5

Q ss_pred             cceeeecC-----CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEE
Q 014154           15 LRALTFDS-----LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI   79 (430)
Q Consensus        15 ~~l~t~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~i   79 (430)
                      -+++..+.     ++.|.+.|..++     +++.++.....+ .   +.+  +|||++|+++.          .++.|.+
T Consensus        45 ~~vyV~~~~~~~~~~~V~ViD~~t~-----~v~~~I~vG~~P-~---va~--spDG~~lyVan~~~~r~~~G~~~~~Vsv  113 (386)
T 3sjl_D           45 RRVYVNDPAHFAAVTQQFVIDGEAG-----RVIGMIDGGFLP-N---PVV--ADDGSFIAHASTVFSRIARGERTDYVEV  113 (386)
T ss_dssp             TEEEEEECGGGCSSEEEEEEETTTT-----EEEEEEEECSSC-E---EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CEEEEEcCcccCCCCEEEEEECCCC-----eEEEEEECCCCC-c---EEE--CCCCCEEEEEcccccccccCCCCCEEEE
Confidence            45666554     679999999987     777666543333 2   444  77888888765          3678999


Q ss_pred             ecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc-c-CCeeEEEEeeecCccccCCCcceEEe
Q 014154           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-T-KGKASMRSIEVTKVSAESSCSTVKSW  157 (430)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~v~~~~~~~~~~~~~~~~i~~~  157 (430)
                      ||..+++.+..+..-....... ......+.+.+..        ..++.+. . ++.+.|+++....        .+..+
T Consensus       114 iD~~t~~v~~~I~v~~g~r~~~-g~~P~~~a~spDG--------k~lyVan~~~~~~VsVID~~t~~--------vv~tI  176 (386)
T 3sjl_D          114 FDPVTLLPTADIELPDAPRFLV-GTYPWMTSLTPDG--------KTLLFYQFSPAPAVGVVDLEGKA--------FKRML  176 (386)
T ss_dssp             ECTTTCCEEEEEEETTCCCCCB-SCCGGGEEECTTS--------SEEEEEECSSSCEEEEEETTTTE--------EEEEE
T ss_pred             EECCCCeEEEEEECCCcccccc-CCCCceEEEcCCC--------CEEEEEEcCCCCeEEEEECCCCc--------EEEEE
Confidence            9999998887765310000000 0011123333332        2344333 2 5677777764332        33333


Q ss_pred             eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEeeCCCCCCCCCCcCCcce-eEEEEeecCCCCEEEEEeC
Q 014154          158 NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDK-CEKIWTAKPPPKNSLGIFTPTWF-TSAAFLSIDDHRKFVAGTN  235 (430)
Q Consensus       158 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~  235 (430)
                      .+.  +.  ...+....+.+++.+.||.+.+.++.+ ++........    +.. ....+ ....|. .++|++++ .+.
T Consensus       177 ~v~--g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~----~~~-~~~~~~~~~~~~-~~dG~~~~-vs~  245 (386)
T 3sjl_D          177 DVP--DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV----FHP-EDEFLINHPAYS-QKAGRLVW-PTY  245 (386)
T ss_dssp             ECC--SE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC----CSC-TTSCBCSCCEEE-TTTTEEEE-EBT
T ss_pred             ECC--Cc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecce----ecc-ccccccccceeE-cCCCcEEE-EeC
Confidence            321  11  122233456777888899999999876 5543222111    000 00111 123553 46775555 567


Q ss_pred             CCcEEEEECCCCCc-ceEEEe----------ecCCCeEEEEecCCCCEEEEEeC----------CCcEEEEEccCCeEEe
Q 014154          236 DHQVRLYDTSAQRR-PVMSFD----------FRETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLG  294 (430)
Q Consensus       236 dg~i~iwd~~~~~~-~~~~~~----------~~~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd~~~~~~~~  294 (430)
                      +|.|++.|+.+... ....+.          ........++++|+++.+++...          .+.|.++|+.+++.+.
T Consensus       246 ~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~  325 (386)
T 3sjl_D          246 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA  325 (386)
T ss_dssp             TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence            89999999976431 111121          01123445778999998888753          2579999999999999


Q ss_pred             eeeCCCCCCeEEEEecCCCC-eEEEE-eCCCcEEEEECCCCceeeEEEeeccccce
Q 014154          295 CFIGKCSGSIRSIARHPTLP-IIASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEV  348 (430)
Q Consensus       295 ~~~~~~~~~v~~i~~~~~~~-~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  348 (430)
                      .+..  ...+..+.+++|++ +|+++ ..++.|.++|..+++.+.++...+|....
T Consensus       326 ~i~v--g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l  379 (386)
T 3sjl_D          326 KFEM--GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQV  379 (386)
T ss_dssp             EEEE--EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCE
T ss_pred             EEEC--CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCcee
Confidence            9886  34789999999996 66665 45899999999999999998777775443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=3.2e-10  Score=100.03  Aligned_cols=273  Identities=8%  Similarity=0.005  Sum_probs=173.0

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      ..++..  .++|+++++...++.|.+||.. ++... +..  +    .....+..+.+-+ ..       ..+++...++
T Consensus        22 p~~i~~--d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~--~----~~~~~~~~i~~~~-~g-------~l~v~~~~~~   83 (300)
T 2qc5_A           22 PYGITS--SEDGKVWFTQHKANKISSLDQS-GRIKE-FEV--P----TPDAKVMCLIVSS-LG-------DIWFTENGAN   83 (300)
T ss_dssp             EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEE-EEC--S----STTCCEEEEEECT-TS-------CEEEEETTTT
T ss_pred             cceeeE--CCCCCEEEEcCCCCeEEEECCC-CceEE-EEC--C----CCCCcceeEEECC-CC-------CEEEEecCCC
Confidence            445555  5678777766678999999986 55332 211  0    1113444454432 21       2444444456


Q ss_pred             eeEEEEeeecCccccCCCcceEEeeec-CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCc
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIF  211 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~  211 (430)
                      .+.+++..          +.+..+... ....+..++++++++++++...++.|..||.. ++.... +...        
T Consensus        84 ~v~~~d~~----------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~--------  144 (300)
T 2qc5_A           84 KIGKLSKK----------GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNK--------  144 (300)
T ss_dssp             EEEEECTT----------SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSST--------
T ss_pred             eEEEECCC----------CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCC--------
Confidence            66666532          233444432 23568899999999888777668899999987 544322 2111        


Q ss_pred             CCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe
Q 014154          212 TPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK  291 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  291 (430)
                       ...+..+++  .+++++.++...++.|..||. ++.........+...+.++++++++++.++....+.|.+||. +++
T Consensus       145 -~~~~~~i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~  219 (300)
T 2qc5_A          145 -GSYPAFITL--GSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE  219 (300)
T ss_dssp             -TCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             -CCCceeEEE--CCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence             145788888  788887776666789999998 434212122233456889999999977776666778999998 555


Q ss_pred             EEee-eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceE
Q 014154          292 LLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLE  370 (430)
Q Consensus       292 ~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~  370 (430)
                      .... +..+ ...+.+++++++|.+.++...++.|..||. +++.. .+.+... ...+.++++.++|.+..+... .|.
T Consensus       220 ~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~-~~~~~~i~~~~~g~l~v~~~~-~i~  294 (300)
T 2qc5_A          220 ISEYDIPTP-NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTE-NAEPHGITFGKDGSVWFALKC-KIG  294 (300)
T ss_dssp             EEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCST-TCCCCCEEECTTSCEEEECSS-EEE
T ss_pred             EEEEECCCC-CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCcc-CCccceeEeCCCCCEEEEccC-ceE
Confidence            4332 3333 467899999999987776666789999998 45443 3323322 233588999999988444444 565


Q ss_pred             ecC
Q 014154          371 IQN  373 (430)
Q Consensus       371 ~~~  373 (430)
                      .++
T Consensus       295 ~~~  297 (300)
T 2qc5_A          295 KLN  297 (300)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.53  E-value=1.3e-11  Score=121.41  Aligned_cols=307  Identities=12%  Similarity=0.077  Sum_probs=191.9

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC---------cceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS---------NCVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~   84 (430)
                      ..+++.++.++.|.-+|+.++     +.+=++......         ........    ++..|++++.|+.|..+|..+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~v~v~~~dg~l~alD~~t  147 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTG-----NRIWTYDPQIDRSTGFKGCCDVVNRGVAL----WKGKVYVGAWDGRLIALDAAT  147 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTT-----EEEEEECCCCCGGGGGGSSSCSCCCCCEE----ETTEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEECCCCeEEEEECCCC-----cEEEEEcCCCCccccccccccCCCCCceE----ECCEEEEEcCCCEEEEEECCC
Confidence            367888888999999999988     565444332111         00111222    234688889999999999999


Q ss_pred             Ccccceeecc-CCCC-CCCCCCceEEEEEeecCcccccccCceEEEEcc------CCeeEEEEeeecCccccCCCcceEE
Q 014154           85 GDLRVAISNA-GDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKS  156 (430)
Q Consensus        85 ~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~v~~~~~~~~~~~~~~~~i~~  156 (430)
                      |+.+..+... .... ......++.    .   .       +.++.+..      ++.+..++......          +
T Consensus       148 G~~~W~~~~~~~~~~~~~~~~~p~v----~---~-------~~v~v~~~~~~~~~~g~v~a~D~~tG~~----------~  203 (677)
T 1kb0_A          148 GKEVWHQNTFEGQKGSLTITGAPRV----F---K-------GKVIIGNGGAEYGVRGYITAYDAETGER----------K  203 (677)
T ss_dssp             CCEEEEEETTTTCCSSCBCCSCCEE----E---T-------TEEEECCBCTTTCCBCEEEEEETTTCCE----------E
T ss_pred             CCEEeeecCCcCcCcCcccccCcEE----E---C-------CEEEEEecccccCCCCEEEEEECCCCcE----------E
Confidence            9988877642 1000 000011111    0   0       34444433      35555554432221          1


Q ss_pred             eeecC---------------------------------CCceEEEEEcCCCCEEEEEeCCC-------------------
Q 014154          157 WNVCA---------------------------------SGTIAFSKVDISEKFSLFGGKGV-------------------  184 (430)
Q Consensus       157 ~~~~~---------------------------------~~~i~~~~~~~~~~~l~~~~~d~-------------------  184 (430)
                      |....                                 ......++++|++..++++..++                   
T Consensus       204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~  283 (677)
T 1kb0_A          204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA  283 (677)
T ss_dssp             EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence            22111                                 11123578889999999887664                   


Q ss_pred             eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC---CEEEEEeCCCcEEEEECCCCCcceEEEeecC---
Q 014154          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---  258 (430)
Q Consensus       185 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---  258 (430)
                      .|..+|..+++.++.++.................+..  ..+|   ..++.++.+|.|+++|..+++. +..+....   
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~--~~dG~~~~~l~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~~  360 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADI--KIAGKPRKVILHAPKNGFFFVLDRTNGKF-ISAKNFVPVNW  360 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSS
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEec--ccCCcEeeEEEEECCCCEEEEEECCCCCE-eccccccccCc
Confidence            5999999999999987653322111111111222222  2366   6789999999999999999774 44433211   


Q ss_pred             --------CCe------------------------EEEEecCCCCEEEEEeCC---------------------------
Q 014154          259 --------TPI------------------------KAVAEEPDSFNIYIGNGS---------------------------  279 (430)
Q Consensus       259 --------~~i------------------------~~~~~sp~~~~l~~~~~d---------------------------  279 (430)
                              .++                        ..++|+|+..++++...+                           
T Consensus       361 ~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  440 (677)
T 1kb0_A          361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW  440 (677)
T ss_dssp             EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred             ccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccc
Confidence                    011                        156889998888876532                           


Q ss_pred             ----------------CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec
Q 014154          280 ----------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ  343 (430)
Q Consensus       280 ----------------~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  343 (430)
                                      +.|..||+.+++.+.++..  ..++....+...+.+++.++.||.+++||.++++.+..+.+..
T Consensus       441 ~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~  518 (677)
T 1kb0_A          441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (677)
T ss_dssp             CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence                            7799999999999888864  3345555566778889999999999999999999999975433


Q ss_pred             cccceEEeeeccccccc
Q 014154          344 HLNEVVFDSAFADKEVA  360 (430)
Q Consensus       344 ~~~~~v~~~~~s~~g~~  360 (430)
                      .  ....-+.|..+|+.
T Consensus       519 ~--~~~~p~~y~~~G~~  533 (677)
T 1kb0_A          519 G--VVAAPSTYMVDGRQ  533 (677)
T ss_dssp             C--CCSCCEEEEETTEE
T ss_pred             C--cccCCEEEEeCCEE
Confidence            2  22245667788875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.52  E-value=1.9e-11  Score=120.46  Aligned_cols=307  Identities=10%  Similarity=0.076  Sum_probs=187.4

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCc---------ceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSN---------CVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~   84 (430)
                      ..+++.++.++.|..+|+.++     +.+=++..+....         .......    .+..|++++.|+.|..+|..+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~T  140 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDG-----RLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKT  140 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEEcCCCeEEEEECCCC-----ceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCC
Confidence            367888888999999999988     5554443322110         0011112    234688899999999999999


Q ss_pred             Ccccceeecc-CCCC-CCCCCCceEEEEEeecCcccccccCceEEEEcc------CCeeEEEEeeecCccccCCCcceEE
Q 014154           85 GDLRVAISNA-GDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKVSAESSCSTVKS  156 (430)
Q Consensus        85 ~~~~~~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~v~~~~~~~~~~~~~~~~i~~  156 (430)
                      |+.+..+... .... ......++.    .+          +.++.+..      +|.+..++......          +
T Consensus       141 G~~~W~~~~~~~~~~~~~~~~sP~v----~~----------g~v~vg~~~~~~~~~g~v~a~D~~tG~~----------~  196 (689)
T 1yiq_A          141 GQRAWSVDTRADHKRSYTITGAPRV----VN----------GKVVIGNGGAEFGVRGYVTAYDAETGKE----------A  196 (689)
T ss_dssp             CCEEEEEECCSCTTSCCBCCSCCEE----ET----------TEEEECCBCTTTCCBCEEEEEETTTCCE----------E
T ss_pred             CCEeeeecCcCCCCCCccccCCcEE----EC----------CEEEEEeCCCccCCCCEEEEEECCCCcE----------E
Confidence            9988776642 1100 000111111    00          23333322      34444444322211          1


Q ss_pred             eeec--------------------------------CCCceEEEEEcCCCCEEEEEeCCCe-------------------
Q 014154          157 WNVC--------------------------------ASGTIAFSKVDISEKFSLFGGKGVE-------------------  185 (430)
Q Consensus       157 ~~~~--------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~-------------------  185 (430)
                      |...                                .......++++|+..++++++.++.                   
T Consensus       197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~  276 (689)
T 1yiq_A          197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS  276 (689)
T ss_dssp             EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred             EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence            2111                                0111235788898899999888764                   


Q ss_pred             EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC---EEEEEeCCCcEEEEECCCCCcceEEEeecC----
Q 014154          186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE----  258 (430)
Q Consensus       186 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----  258 (430)
                      |..+|.++++.++.++..............+.....  ..++.   .++.++.+|.++++|..+++. +.......    
T Consensus       277 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~--~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w~  353 (689)
T 1yiq_A          277 IVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAEL--PIDGKPRKVLMQAPKNGFFYVIDRATGEL-LSAKGIVPQSWT  353 (689)
T ss_dssp             EEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSSE
T ss_pred             EEEEEccCCceeEeeecCCcccccccCCCCcEEEee--ccCCcEEEEEEEECCCCeEEEEECCCCCE-eccccccccccc
Confidence            999999999999987653221111101111111122  12454   788899999999999999774 32211100    


Q ss_pred             -----------------------------------CCeEEEEecCCCCEEEEEeC-------------------------
Q 014154          259 -----------------------------------TPIKAVAEEPDSFNIYIGNG-------------------------  278 (430)
Q Consensus       259 -----------------------------------~~i~~~~~sp~~~~l~~~~~-------------------------  278 (430)
                                                         ..-..++|+|+..++++...                         
T Consensus       354 ~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g  433 (689)
T 1yiq_A          354 KGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLG  433 (689)
T ss_dssp             EEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCS
T ss_pred             cccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccC
Confidence                                               00113688898888887632                         


Q ss_pred             --------------------CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154          279 --------------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       279 --------------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                                          +|.|..||+.+++.+.++..+  .++..-.+...+.+++.++.||.|+.||.++|+.+..
T Consensus       434 ~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~  511 (689)
T 1yiq_A          434 LRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWE  511 (689)
T ss_dssp             SEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             ccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--CCccCccceECCCEEEEECCCCcEEEEECCCCcccee
Confidence                                377999999999999888764  2334345666778999999999999999999999998


Q ss_pred             EEeeccccceEEeeeccccccc
Q 014154          339 VFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       339 ~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      +.+...  ....-+.|..+|+.
T Consensus       512 ~~~~~~--~~~~p~ty~~~G~q  531 (689)
T 1yiq_A          512 QPAASG--VMAAPVTYSVDGEQ  531 (689)
T ss_dssp             EECSSC--CCSCCEEEEETTEE
T ss_pred             eeCCCC--cccCceEEEECCEE
Confidence            654332  22244677788875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.51  E-value=3.5e-10  Score=99.65  Aligned_cols=269  Identities=8%  Similarity=0.016  Sum_probs=165.5

Q ss_pred             CCcceeeecC-CCceEEEEccCCCCCcceeee-ecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccce
Q 014154           13 PPLRALTFDS-LGLIKVIEARGEHGGVPKVVE-RWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVA   90 (430)
Q Consensus        13 ~~~~l~t~~~-dg~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~   90 (430)
                      |...++.++. ++.|.+|+.. +     ++.. ....+...  ...+.+  .++|.++++...++.|..|+.. ++. ..
T Consensus        24 ~~g~l~v~~~~~~~v~~~d~~-~-----~~~~~~~~~~~~~--~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~-~~   91 (299)
T 2z2n_A           24 DKGKVWITQHKANMISCINLD-G-----KITEYPLPTPDAK--VMCLTI--SSDGEVWFTENAANKIGRITKK-GII-KE   91 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECTT-C-----CEEEEECSSTTCC--EEEEEE--CTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred             CCCCEEEEecCCCcEEEEcCC-C-----CeEEecCCcccCc--eeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcE-EE
Confidence            3445555554 6789999887 4     3322 11222233  455555  5678877776668899999975 432 22


Q ss_pred             eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec-CCCceEEEE
Q 014154           91 ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSK  169 (430)
Q Consensus        91 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~  169 (430)
                      +..  +    .....+..+.+-+ ..       ..+++...++.+.+++.          ++.+..+... ....+..++
T Consensus        92 ~~~--~----~~~~~~~~i~~~~-~g-------~l~v~~~~~~~i~~~d~----------~g~~~~~~~~~~~~~~~~i~  147 (299)
T 2z2n_A           92 YTL--P----NPDSAPYGITEGP-NG-------DIWFTEMNGNRIGRITD----------DGKIREYELPNKGSYPSFIT  147 (299)
T ss_dssp             EEC--S----STTCCEEEEEECT-TS-------CEEEEETTTTEEEEECT----------TCCEEEEECSSTTCCEEEEE
T ss_pred             EeC--C----CcCCCceeeEECC-CC-------CEEEEecCCceEEEECC----------CCCEEEecCCCCCCCCceEE
Confidence            221  0    0123444454432 21       24444455666766653          1233333322 345688999


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC
Q 014154          170 VDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       170 ~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  248 (430)
                      ++++++++++...++.|..||. +++.... ....         ...+..+++  .+++.+.++...++.|.+||. ++.
T Consensus       148 ~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~---------~~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          148 LGSDNALWFTENQNNAIGRITE-SGDITEFKIPTP---------ASGPVGITK--GNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             ECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST---------TCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             EcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCC---------CCcceeEEE--CCCCCEEEEccCCceEEEECC-CCc
Confidence            9999988777767789999998 6554332 1111         145778888  788887777667889999999 544


Q ss_pred             cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEee-eeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i  327 (430)
                      ........+...+.+++++++|+++++...++.|..||. +++.... +..+ ...+.++++ +++.++++.. .+.|..
T Consensus       215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-~~~~~~i~~-~~g~l~v~~~-~~~l~~  290 (299)
T 2z2n_A          215 ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIK-SAEPHGICF-DGETIWFAME-CDKIGK  290 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSS-SCCEEEEEE-CSSCEEEEET-TTEEEE
T ss_pred             EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCC-CCccceEEe-cCCCEEEEec-CCcEEE
Confidence            212122334467899999999986666557789999998 5553322 2333 467899999 8888766655 566777


Q ss_pred             EECCCCc
Q 014154          328 WDIKTRQ  334 (430)
Q Consensus       328 wd~~~~~  334 (430)
                      ++.++++
T Consensus       291 ~~~~~~~  297 (299)
T 2z2n_A          291 LTLIKDN  297 (299)
T ss_dssp             EEEC---
T ss_pred             EEcCccc
Confidence            8876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.49  E-value=4.6e-12  Score=125.75  Aligned_cols=193  Identities=9%  Similarity=-0.077  Sum_probs=133.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCe-------------EEEEECCCCe----eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC
Q 014154          166 AFSKVDISEKFSLFGGKGVE-------------VNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR  228 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~-------------i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  228 (430)
                      ..++|+|+++.|+.++.+..             |++|++.++.    .+.....+         ...+..+.|  +|+|+
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~---------~~~~~~~~~--SpDG~  239 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD---------PTTFLQSDL--SRDGK  239 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC---------TTCEEEEEE--CTTSC
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC---------CEEEEEEEE--CCCCC
Confidence            57899999999999988766             9999998765    23222222         145778889  89999


Q ss_pred             EEEEEeCCC----cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC----CCcEEEEEccCCeE--EeeeeC
Q 014154          229 KFVAGTNDH----QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGKL--LGCFIG  298 (430)
Q Consensus       229 ~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~~--~~~~~~  298 (430)
                      +|+.++.++    .|.+|+..++.  ...+..+...+....+ +++. |+..+.    ++.|.+||+.+++.  ...+..
T Consensus       240 ~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~  315 (695)
T 2bkl_A          240 YLFVYILRGWSENDVYWKRPGEKD--FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVP  315 (695)
T ss_dssp             CEEEEEEETTTEEEEEEECTTCSS--CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC
T ss_pred             EEEEEEeCCCCceEEEEEcCCCCc--eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEec
Confidence            888877666    67777665433  4555566566666666 5666 554443    57899999987653  233333


Q ss_pred             CC-CCCeEEEEecCCCCeEEEEeCCCcEEEEECC-CCceeeEEEeeccccceEEeeeccccccc-c----ccCCCCceEe
Q 014154          299 KC-SGSIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEVA-N----AAADAPMLEI  371 (430)
Q Consensus       299 ~~-~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~----~~~~d~~i~~  371 (430)
                      ++ ...+..++|+ ++.++++...|+..+||.+. +++.+..+  ..+....+..++++|++.. +    +...++.|.+
T Consensus       316 ~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l--~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~  392 (695)
T 2bkl_A          316 EDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTV--QLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK  392 (695)
T ss_dssp             CCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEEC--CCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred             CCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEe--cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            32 4467888888 67788888999988888655 45555543  3332345678899999865 3    3345678999


Q ss_pred             cCCCC
Q 014154          372 QNGND  376 (430)
Q Consensus       372 ~~~~~  376 (430)
                      |+...
T Consensus       393 ~d~~~  397 (695)
T 2bkl_A          393 TSVST  397 (695)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            98765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.48  E-value=2.4e-10  Score=103.95  Aligned_cols=270  Identities=11%  Similarity=-0.066  Sum_probs=168.2

Q ss_pred             CCCCceeEEeec--CC---eEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc------
Q 014154           62 SQNDPLLAVARK--NG---LTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------  130 (430)
Q Consensus        62 ~p~g~~l~~g~~--dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------  130 (430)
                      .|+++++++...  ..   .|.++|..+++.+..+..    +    ..+  .+.+.+...        .+..+.      
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~----g----~~p--~i~~spDg~--------~lyv~n~~~~~~   90 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG----G----FLP--NPVAAHSGS--------EFALASTSFSRI   90 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC----C----CCC--CeEECCCCC--------EEEEEecccccc
Confidence            366777777553  22   889999999887766543    1    111  345544332        343332      


Q ss_pred             ----cCCeeEEEEeeecCccccCCCcceEEeeec------CCCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeE
Q 014154          131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW  198 (430)
Q Consensus       131 ----~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~  198 (430)
                          .++.+.+++.....        .+....+.      .......++++|++++|+++..  ++.|.++| .+++.+.
T Consensus        91 ~rg~~~~~v~viD~~t~~--------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~  161 (373)
T 2mad_H           91 AKGKRTDYVEVFDPVTFL--------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD  161 (373)
T ss_pred             ccCCCCCeEEEEECCCCc--------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe
Confidence                25667777764221        22222221      1123457899999999998874  57899999 9988876


Q ss_pred             e-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe-----ecCCCe-EEEEecCCCC
Q 014154          199 T-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD-----FRETPI-KAVAEEPDSF  271 (430)
Q Consensus       199 ~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~i-~~~~~sp~~~  271 (430)
                      . +...          .   ++.+. ......+++.+.||.+.++|. +++. .....     ....++ ....+.+++.
T Consensus       162 ~~i~~~----------~---~~~~~-~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          162 QLLSSP----------T---CYHIH-PGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             EEcCCC----------c---eEEEE-eCCCceEEEEcCCCCEEEEEC-CCcE-EEEEeccccccCCcceeecceeEecCC
Confidence            6 5432          1   13332 223345667778999999999 6553 32211     111222 2345666665


Q ss_pred             EEEEEeCCCcEEEEEccCCe--EEeeeeCC---------CCCCeEEEEecCCCCeEEEEeC----------CCcEEEEEC
Q 014154          272 NIYIGNGSGDLASVDIRTGK--LLGCFIGK---------CSGSIRSIARHPTLPIIASCGL----------DSYLRFWDI  330 (430)
Q Consensus       272 ~l~~~~~d~~i~iwd~~~~~--~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~----------dg~i~iwd~  330 (430)
                      .++..+..+.+.+.|+....  .+..+...         .......+.++|++..|+.+..          ++.|.++|+
T Consensus       226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~  305 (373)
T 2mad_H          226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence            55555578899999997553  22332210         0123445789999988877653          357999999


Q ss_pred             CCCceeeEEEeeccccceEEeeecccccc-c-cccC-CCCceEecCCCCCc
Q 014154          331 KTRQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAA-DAPMLEIQNGNDTQ  378 (430)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~-~d~~i~~~~~~~~~  378 (430)
                      .+++.+.++...+    ...+++|+|||+ + +++. .++.|.++|.....
T Consensus       306 ~t~~vv~~i~~g~----~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          306 LVGQTSSQISLGH----DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             CCCEEEEEEECCC----CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence            9999999864332    358999999999 5 4444 58999999987644

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.48  E-value=1.7e-11  Score=121.66  Aligned_cols=242  Identities=9%  Similarity=-0.083  Sum_probs=148.3

Q ss_pred             eeeeeecCCCCCceeE-----EeecCCeEEEecCCCCccc-ce-eeccCCCCCCCCCCceEEEEEeecCcccccccCceE
Q 014154           54 VLAASIDDSQNDPLLA-----VARKNGLTDILNPLNGDLR-VA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL  126 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~-----~g~~dg~i~iwd~~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  126 (430)
                      +..+.+  +|||++||     .|+.+..|++||+.+++.+ .. +...          ....+.|.+..        ..+
T Consensus       123 ~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~----------~~~~~~wspDg--------~~l  182 (695)
T 2bkl_A          123 LGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGG----------KYATPKWTPDS--------KGF  182 (695)
T ss_dssp             EEEEEE--CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCC----------TTCCCEECTTS--------SEE
T ss_pred             EEEEEE--CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcc----------cccceEEecCC--------CEE
Confidence            555666  89999999     4555678999999988865 21 1111          00123333322        245


Q ss_pred             EEEccCCe-------------eEEEEeeecCccccCCCcceEEeeec-CCCceEEEEEcCCCCEEEEEeCCC----eEEE
Q 014154          127 LTCTTKGK-------------ASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDISEKFSLFGGKGV----EVNV  188 (430)
Q Consensus       127 ~~~~~~g~-------------~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~----~i~~  188 (430)
                      +.++.+..             +.+|++.....      ....++... +...+..+.|+|+|++|++.+.++    .|++
T Consensus       183 ~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~------~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~  256 (695)
T 2bkl_A          183 YYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS------KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW  256 (695)
T ss_dssp             EEEECCCCTTSCGGGGGGGCEEEEEETTSCGG------GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEE
T ss_pred             EEEEecCCCCCccccCCCCCEEEEEECCCCch------hceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEE
Confidence            55544333             67776543220      123344322 234678999999999998887665    6777


Q ss_pred             EECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe---CCCcEEEEECCCCCc--ceEEEeec-CCCeE
Q 014154          189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT---NDHQVRLYDTSAQRR--PVMSFDFR-ETPIK  262 (430)
Q Consensus       189 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~-~~~i~  262 (430)
                      |+..++... .+..+.         ..+....+   +++.+++.+.   .++.|.+||+.++..  ....+..+ ...+.
T Consensus       257 ~~~~~~~~~-~l~~~~---------~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~  323 (695)
T 2bkl_A          257 KRPGEKDFR-LLVKGV---------GAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLL  323 (695)
T ss_dssp             ECTTCSSCE-EEEECS---------SCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEE
T ss_pred             EcCCCCceE-EeecCC---------CceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEE
Confidence            776554332 222221         22344444   3455444443   257899999987542  12333333 44678


Q ss_pred             EEEecCCCCEEEEEeCCCcEEEEEcc-CCeEEeeeeCCCCCCeEEEEecCCCCeEEEE----eCCCcEEEEECCCCce
Q 014154          263 AVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTRQL  335 (430)
Q Consensus       263 ~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~----~~dg~i~iwd~~~~~~  335 (430)
                      .++|+ ++.++++...|+..+||.+. +++....+..+....+..+.++|++..|+..    ...++|++||+.+++.
T Consensus       324 ~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          324 SVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            88888 67788888899988887655 4655566654435678888999999766633    2347899999988774

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.48  E-value=8.8e-11  Score=107.49  Aligned_cols=307  Identities=12%  Similarity=0.090  Sum_probs=186.7

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCC--------CCcceeeeeecCCCCCceeEEeecCCeEEEecCCCC
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH--------SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~   85 (430)
                      ..++++++.+|.|..+|..++     +.+-.+....        ..........    ++..|++++.++.|..+|..+|
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG  123 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDG-----KEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDG  123 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTC-----CEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTC
T ss_pred             CCEEEEEcCCCeEEEEEccCC-----ceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCC
Confidence            367888999999999999887     4443332211        1111111222    2346888889999999999999


Q ss_pred             cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (430)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i  165 (430)
                      +.+.........    ...++.     .  .       +.++.++.++.+..++.....          .+|.......+
T Consensus       124 ~~~W~~~~~~~~----~~~p~~-----~--~-------~~v~v~~~~g~l~~~d~~tG~----------~~W~~~~~~~~  175 (376)
T 3q7m_A          124 TVAWQTKVAGEA----LSRPVV-----S--D-------GLVLIHTSNGQLQALNEADGA----------VKWTVNLDMPS  175 (376)
T ss_dssp             CEEEEEECSSCC----CSCCEE-----E--T-------TEEEEECTTSEEEEEETTTCC----------EEEEEECCC--
T ss_pred             CEEEEEeCCCce----EcCCEE-----E--C-------CEEEEEcCCCeEEEEECCCCc----------EEEEEeCCCCc
Confidence            987666542111    001111     1  1       467777777777776643221          23443332222


Q ss_pred             E------EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCC-CCcCCcce-eEEEEeecCCCCEEEEEeCCC
Q 014154          166 A------FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWF-TSAAFLSIDDHRKFVAGTNDH  237 (430)
Q Consensus       166 ~------~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg  237 (430)
                      .      ....  .+..+++++.++.|..+|..+++.++.......... .+.....+ .....    .+..++.++.++
T Consensus       176 ~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~v~~~~~~g  249 (376)
T 3q7m_A          176 LSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV----VNGVVFALAYNG  249 (376)
T ss_dssp             ---CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE----ETTEEEEECTTS
T ss_pred             eeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE----ECCEEEEEecCc
Confidence            1      1112  245788888899999999999999887654321000 00000001 11112    345777788899


Q ss_pred             cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      .+..+|..+++. +....  ......+..  ++..|++++.++.|..+|..+++.+..........+.....  .+..|+
T Consensus       250 ~l~~~d~~tG~~-~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~  322 (376)
T 3q7m_A          250 NLTALDLRSGQI-MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLV  322 (376)
T ss_dssp             CEEEEETTTCCE-EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEE
T ss_pred             EEEEEECCCCcE-Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEE
Confidence            999999998764 33333  233445544  35688888899999999999999887776321222333333  346788


Q ss_pred             EEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecC
Q 014154          318 SCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQN  373 (430)
Q Consensus       318 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~  373 (430)
                      .++.+|.|+++|..+++.+....+.+  ... .......++.++.++.+|.|..|+
T Consensus       323 v~~~~g~l~~~d~~tG~~~~~~~~~~--~~~-~~~~~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          323 VGDSEGYLHWINVEDGRFVAQQKVDS--SGF-QTEPVAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EECTTSEEEEEETTTCCEEEEEECCT--TCB-CSCCEEETTEEEEEBTTSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCcEEEEEecCC--Ccc-eeCCEEECCEEEEEeCCCEEEEEe
Confidence            89999999999999999988754321  111 221222366778888899998885

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.47  E-value=1.2e-09  Score=99.29  Aligned_cols=282  Identities=10%  Similarity=-0.042  Sum_probs=170.9

Q ss_pred             cceeeecC--CC---ceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEE
Q 014154           15 LRALTFDS--LG---LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDI   79 (430)
Q Consensus        15 ~~l~t~~~--dg---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~i   79 (430)
                      -+++..+.  .+   +|.++|..++     +++.++.....+    .+.+  +|||++|+++.          .++.|.+
T Consensus        33 ~~~yv~~~~~~~~~~~v~v~D~~t~-----~~~~~i~~g~~p----~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~v  101 (373)
T 2mad_H           33 RRSYINLPAHHSAIIQQWVLDAGSG-----SILGHVNGGFLP----NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             CEEEEeCCcccCCccEEEEEECCCC-----eEEEEecCCCCC----CeEE--CCCCCEEEEEeccccccccCCCCCeEEE
Confidence            34555553  33   8899999887     666665532222    4445  78999998875          3678999


Q ss_pred             ecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc--CCeeEEEEeeecCccccCCCcceEE-
Q 014154           80 LNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKS-  156 (430)
Q Consensus        80 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~~~i~~-  156 (430)
                      ||..+.+.+..+..-....+... .....+.+.+..        ..++.+..  ++.+.+++ ....        .+.. 
T Consensus       102 iD~~t~~~~~~i~~~~~~~~~~g-~~p~~~~~spDG--------~~l~v~n~~~~~~v~viD-~t~~--------~~~~~  163 (373)
T 2mad_H          102 FDPVTFLPIADIELPDAPRFDVG-PYSWMNANTPNN--------ADLLFFQFAAGPAVGLVV-QGGS--------SDDQL  163 (373)
T ss_pred             EECCCCcEEEEEECCCccccccC-CCccceEECCCC--------CEEEEEecCCCCeEEEEE-CCCC--------EEeEE
Confidence            99988877766543100000000 112234443333        35554443  46677776 4322        2222 


Q ss_pred             eeecCCCceEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcc-eeEEEEeecCCCCEEEEEe
Q 014154          157 WNVCASGTIAFSKVDISE-KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW-FTSAAFLSIDDHRKFVAGT  234 (430)
Q Consensus       157 ~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~s~~  234 (430)
                      ...  ..   ++.+.|.+ ..+++.+.||.+.++|. +++........... .   .... .....|  .+++..++..+
T Consensus       164 i~~--~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~-~---~~~p~~~~~~~--~~~~~~~~~~~  231 (373)
T 2mad_H          164 LSS--PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAML-T---AAQNLLTQPAQ--ANKSGRIVWPV  231 (373)
T ss_pred             cCC--Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccc-c---CCcceeeccee--EecCCEEEEEc
Confidence            221  12   23444544 45566778999999999 77766332210000 0   0011 122344  34444444445


Q ss_pred             CCCcEEEEECCCCCc-ceEEEeec----------CCCeEEEEecCCCCEEEEEeC----------CCcEEEEEccCCeEE
Q 014154          235 NDHQVRLYDTSAQRR-PVMSFDFR----------ETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLL  293 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~-~~~~~~~~----------~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd~~~~~~~  293 (430)
                      ..+.+.+.|+..... .+..+...          ......+.++|+++.++++..          ++.|.++|+.+++.+
T Consensus       232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv  311 (373)
T 2mad_H          232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence            788999999975431 11222111          122445789999998888653          357999999999999


Q ss_pred             eeeeCCCCCCeEEEEecCCCC-eEEEEe-CCCcEEEEECCCCceeeEE
Q 014154          294 GCFIGKCSGSIRSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       294 ~~~~~~~~~~v~~i~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~  339 (430)
                      .++..  .....++.|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus       312 ~~i~~--g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          312 SQISL--GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEEC--CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            99876  34689999999999 777777 5899999999999998873

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.47  E-value=2.1e-11  Score=110.22  Aligned_cols=241  Identities=10%  Similarity=0.038  Sum_probs=143.9

Q ss_pred             CCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecC---C--eEEEecCCCCcccceeeccCCC
Q 014154           23 LGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKN---G--LTDILNPLNGDLRVAISNAGDS   97 (430)
Q Consensus        23 dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~d---g--~i~iwd~~~~~~~~~~~~~~~~   97 (430)
                      ++.|.+|++.++     +.. .+    ..  +....|  +|||++||..+.+   +  .|.+|++.+++........   
T Consensus        42 ~~~l~~~d~~~~-----~~~-~l----~~--~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---  104 (347)
T 2gop_A           42 ENTIVIENLKNN-----ARR-FI----EN--ATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK---  104 (347)
T ss_dssp             EEEEEEEETTTC-----CEE-EE----ES--CEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES---
T ss_pred             cceEEEEeCCCC-----ceE-Ec----cc--CCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC---
Confidence            567888888875     222 22    22  344556  8999999887654   3  3778888776644333221   


Q ss_pred             CCCCCCCceEEEEEeecCcccccccCceEEEEccC---------------------------CeeEEEEeeecCccccCC
Q 014154           98 GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTK---------------------------GKASMRSIEVTKVSAESS  150 (430)
Q Consensus        98 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------g~~~v~~~~~~~~~~~~~  150 (430)
                             .+..+.|.+..        ..++..+.+                           ..+.+|++..        
T Consensus       105 -------~~~~~~wspdg--------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~--------  161 (347)
T 2gop_A          105 -------NIRSLEWNEDS--------RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES--------  161 (347)
T ss_dssp             -------EEEEEEECTTS--------SEEEEEEECCCC---------CCCC---------CEEEEEEEETTT--------
T ss_pred             -------CccceeECCCC--------CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC--------
Confidence                   14444443322        245444421                           2344444321        


Q ss_pred             Ccce-EEeeecCCCceEEEEEcCCCCEEEEEeCCC-------eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154          151 CSTV-KSWNVCASGTIAFSKVDISEKFSLFGGKGV-------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (430)
Q Consensus       151 ~~~i-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (430)
                       +.. +.+..  . .+..+.|+|++ +++++..+.       ...+|.+.+++.. .+..+          ..+  ..+ 
T Consensus       162 -~~~~~~l~~--~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~----------~~~--~~~-  222 (347)
T 2gop_A          162 -EEVIEEFEK--P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK----------VSF--YAV-  222 (347)
T ss_dssp             -TEEEEEEEE--E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE----------ESE--EEE-
T ss_pred             -CeEEeeecC--C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-EeccC----------cce--eeE-
Confidence             122 33332  2 67788999999 777775542       3344433344332 22111          112  223 


Q ss_pred             ecCCCCEEEEEeCC--------CcEEEEECCCCCcceEEEeecCCCeEE-EEecCCCCEEEEEeCCCcEEEEEccCCeEE
Q 014154          223 SIDDHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDFRETPIKA-VAEEPDSFNIYIGNGSGDLASVDIRTGKLL  293 (430)
Q Consensus       223 ~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~i~~-~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~  293 (430)
                       +|+|+.|+.++.+        ..|.+||  +++ .......+...+.. +.|+ ++ ++++++.++.++|| +.+++..
T Consensus       223 -spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~  295 (347)
T 2gop_A          223 -DSDGERILLYGKPEKKYMSEHNKLYIYD--GKE-VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK  295 (347)
T ss_dssp             -EECSSCEEEEECCSSSCCCSSCEEEEEC--SSC-EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE
T ss_pred             -CCCCCEEEEEEccccCCccccceEEEEC--CCc-eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE
Confidence             6899988877754        3688888  333 23333445667886 8999 88 88999999999999 8866654


Q ss_pred             eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcE-EEEECCCCc
Q 014154          294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYL-RFWDIKTRQ  334 (430)
Q Consensus       294 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i-~iwd~~~~~  334 (430)
                       .+..+ ...|.+++|+|  .++++++.++.. .||.+. ++
T Consensus       296 -~~~~~-~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          296 -PIAKG-RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             -EEECS-SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             -EEecC-CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence             34444 67899999999  677777777665 777766 54

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.47  E-value=3.2e-12  Score=127.25  Aligned_cols=196  Identities=9%  Similarity=0.027  Sum_probs=137.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCc
Q 014154          164 TIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ  238 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  238 (430)
                      .+..++|+|++++|+.+..++     .|++||+.+++........          ..+..++|  +||++.|+.++.++.
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~----------~~~~~~~w--spDg~~l~~~~~~~~  193 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER----------VKFSCMAW--THDGKGMFYNAYPQQ  193 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE----------ECSCCEEE--CTTSSEEEEEECCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC----------cccceEEE--EeCCCEEEEEEECCc
Confidence            477899999999998776543     8999999998876532111          22567889  899999999888766


Q ss_pred             ----------------EEEEECCCCCcc-eEEEee--cCCCeEEEEecCCCCEEEEEeC-----CCcEEEEEccC-----
Q 014154          239 ----------------VRLYDTSAQRRP-VMSFDF--RETPIKAVAEEPDSFNIYIGNG-----SGDLASVDIRT-----  289 (430)
Q Consensus       239 ----------------i~iwd~~~~~~~-~~~~~~--~~~~i~~~~~sp~~~~l~~~~~-----d~~i~iwd~~~-----  289 (430)
                                      |++|++.++... ...+..  |...+..+.|+|||++|+.++.     +..|++||+.+     
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence                            999999876532 233333  3455789999999999988765     57899999986     


Q ss_pred             -Ce-EEeeeeCCCCCCeEEEEecCCCCeEEEEeCC----CcEEEEECCCCce--eeEEEeeccccceEEeeeccccccc-
Q 014154          290 -GK-LLGCFIGKCSGSIRSIARHPTLPIIASCGLD----SYLRFWDIKTRQL--LSAVFLKQHLNEVVFDSAFADKEVA-  360 (430)
Q Consensus       290 -~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~-  360 (430)
                       +. ....+..+ ...+.. .|+|+|..|+..+.+    +.|.+||+.++..  ...+ ........+..++|++++.+ 
T Consensus       274 ~~~~~~~~l~~~-~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~lv  350 (710)
T 2xdw_A          274 TGILKWVKLIDN-FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL-VPEHEKDVLEWVACVRSNFLV  350 (710)
T ss_dssp             CSSCCCEEEECS-SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-ECCCSSCEEEEEEEETTTEEE
T ss_pred             CCccceEEeeCC-CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec-cCCCCCCeEEEEEEEcCCEEE
Confidence             53 34556655 444544 488999887766653    3699999987642  2332 22222235788899877777 


Q ss_pred             cccCCCCce--EecCC
Q 014154          361 NAAADAPML--EIQNG  374 (430)
Q Consensus       361 ~~~~~d~~i--~~~~~  374 (430)
                      ++...++..  .+|+.
T Consensus       351 ~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          351 LCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             EEEEETTEEEEEEEET
T ss_pred             EEEEECCEEEEEEEEC
Confidence            667777754  44554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.46  E-value=1.6e-12  Score=117.51  Aligned_cols=180  Identities=11%  Similarity=0.083  Sum_probs=132.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC-CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP-PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      ..+..+++++...++++|+.+ .+.+|++...+....-... .........+. |+.++|    ++..|+++ .++.|++
T Consensus        38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f----d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF----HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE----ETTEEEEE-ESSEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE----CCCEEEEE-cCCcEEE
Confidence            368899999999999999998 5677987543310000000 00000112235 899999    78899998 8899999


Q ss_pred             EECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154          242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       242 wd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                      ||+.+... ......|...+.++.+.+.  .+++++.||.|.+||+.+++...    + ...|++++|||+|  ++.|..
T Consensus       111 ~dv~sl~~-~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~-~~~Vs~v~WSpkG--~~vg~~  180 (388)
T 1xip_A          111 LDLEELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----L-AQNVTSFDVTNSQ--LAVLLK  180 (388)
T ss_dssp             EESSSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----E-EESEEEEEECSSE--EEEEET
T ss_pred             EEchhhhc-cCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----c-cCCceEEEEcCCc--eEEEEc
Confidence            99987553 5566677788888877654  38888999999999999887653    2 4589999999999  678899


Q ss_pred             CCcEEEEECCCCce--eeEEEe----e---ccccceEEeeeccccccc
Q 014154          322 DSYLRFWDIKTRQL--LSAVFL----K---QHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       322 dg~i~iwd~~~~~~--~~~~~~----~---~~~~~~v~~~~~s~~g~~  360 (430)
                      ||.+++|+...++.  ..++..    .   +| ...|.++.|.+++.+
T Consensus       181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~f  227 (388)
T 1xip_A          181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDF  227 (388)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEE
T ss_pred             CCcEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeE
Confidence            99999999887775  445321    2   23 456899999999987

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.44  E-value=9.8e-11  Score=104.19  Aligned_cols=198  Identities=12%  Similarity=0.050  Sum_probs=135.8

Q ss_pred             CceEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----
Q 014154          163 GTIAFSKVDIS-EKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----  236 (430)
Q Consensus       163 ~~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----  236 (430)
                      ..+..++++++ +++++ ++..+.|.+||.. ++.... ......     .....+.++++  .++++++++...+    
T Consensus        71 ~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~-----~~~~~~~~i~~--d~~g~l~v~~~~~~~~~  141 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEG-----RRMQGCNDCAF--DYEGNLWITAPAGEVAP  141 (314)
T ss_dssp             CCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTS-----CBCBCCCEEEE--CTTSCEEEEECBCBCTT
T ss_pred             CCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCC-----ccccCCcCEEE--CCCCCEEEEecCccccc
Confidence            56889999998 65444 4545589999998 654322 111110     01145788899  8889887776554    


Q ss_pred             -----------CcEEEEECCCCCcceEEEeecCCCeEEEEec----CCCCEEEEE-eCCCcEEEEEcc-CCeE-----Ee
Q 014154          237 -----------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEE----PDSFNIYIG-NGSGDLASVDIR-TGKL-----LG  294 (430)
Q Consensus       237 -----------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s----p~~~~l~~~-~~d~~i~iwd~~-~~~~-----~~  294 (430)
                                 +.|..||.. +.  ...+..+......++|+    |+++.|+++ ..++.|.+||+. +++.     ..
T Consensus       142 ~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~  218 (314)
T 1pjx_A          142 ADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWG  218 (314)
T ss_dssp             SCCCBTTSSSCEEEEEECTT-SC--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEE
T ss_pred             ccccccccCCCCeEEEECCC-CC--EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEE
Confidence                       567777765 33  23333333457889999    999766555 467899999986 4542     23


Q ss_pred             eeeCCCC-CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc-c-cccCCCCceEe
Q 014154          295 CFIGKCS-GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEI  371 (430)
Q Consensus       295 ~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~~d~~i~~  371 (430)
                      .+..+ . ..+..++++++|.++++...++.|.+||..+++.+..+.  .+ ...+.+++|+|+|. + ++...++.|..
T Consensus       219 ~~~~~-~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~  294 (314)
T 1pjx_A          219 HIPGT-HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CP-FEKPSNLHFKPQTKTIFVTEHENNAVWK  294 (314)
T ss_dssp             ECCCC-SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CS-SSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ECCCC-CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CC-CCCceeEEECCCCCEEEEEeCCCCeEEE
Confidence            33333 2 568899999999988888788899999998787776643  23 24468999999998 4 56666788998


Q ss_pred             cCCCC
Q 014154          372 QNGND  376 (430)
Q Consensus       372 ~~~~~  376 (430)
                      |+...
T Consensus       295 ~~~~~  299 (314)
T 1pjx_A          295 FEWQR  299 (314)
T ss_dssp             EECSS
T ss_pred             EeCCC
Confidence            88754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.44  E-value=1e-10  Score=105.16  Aligned_cols=272  Identities=12%  Similarity=0.059  Sum_probs=176.3

Q ss_pred             CCCCceeEEeec-----CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc------
Q 014154           62 SQNDPLLAVARK-----NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------  130 (430)
Q Consensus        62 ~p~g~~l~~g~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------  130 (430)
                      .|+++.+++...     ++.|.+.|..+++.+..+..-    .    .+  .+.+.+...        .++.+.      
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG----~----~P--~va~spDG~--------~lyVan~~~~r~  102 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG----F----LP--NPVVADDGS--------FIAHASTVFSRI  102 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC----S----SC--EEEECTTSS--------CEEEEEEEEEET
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC----C----CC--cEEECCCCC--------EEEEEccccccc
Confidence            688888888765     689999999999988887641    1    12  244444332        343332      


Q ss_pred             ----cCCeeEEEEeeecCccccCCCcceEEeeecC------CCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeE
Q 014154          131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVCA------SGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW  198 (430)
Q Consensus       131 ----~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~------~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~  198 (430)
                          .++.+.+|+.....        .+..+.+..      +.....++++|++++++++..  ++.|.++|+.+++.+.
T Consensus       103 ~~G~~~~~VsviD~~t~~--------v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~  174 (386)
T 3sjl_D          103 ARGERTDYVEVFDPVTLL--------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  174 (386)
T ss_dssp             TEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             ccCCCCCEEEEEECCCCe--------EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEE
Confidence                24567777654322        333333321      224556899999999998864  6899999999999988


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec----CCCeE-EEEec-CCCCE
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----ETPIK-AVAEE-PDSFN  272 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~-~~~~s-p~~~~  272 (430)
                      ++....           . ...+  +...+.+++.+.||.+.+.++............+    ..++. ...|. ++|++
T Consensus       175 tI~v~g-----------~-~~~~--P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~  240 (386)
T 3sjl_D          175 MLDVPD-----------C-YHIF--PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL  240 (386)
T ss_dssp             EEECCS-----------E-EEEE--EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEECCC-----------c-ceee--cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcE
Confidence            875421           1 1233  3445677788889999999987632222222111    11222 23553 67765


Q ss_pred             EEEEeCCCcEEEEEccCCe--EEeeee---------CCCCCCeEEEEecCCCCeEEEEeC----------CCcEEEEECC
Q 014154          273 IYIGNGSGDLASVDIRTGK--LLGCFI---------GKCSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIK  331 (430)
Q Consensus       273 l~~~~~d~~i~iwd~~~~~--~~~~~~---------~~~~~~v~~i~~~~~~~~l~s~~~----------dg~i~iwd~~  331 (430)
                      ++ .+.+|.|++.|+.+..  .+..+.         +-.......++++|++..|+....          .+.|.++|+.
T Consensus       241 ~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~  319 (386)
T 3sjl_D          241 VW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK  319 (386)
T ss_dssp             EE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC
Confidence            55 5568999999997654  333332         100223445778999988877643          2579999999


Q ss_pred             CCceeeEEEeeccccceEEeeecccccc-c--cccCCCCceEecCCCCCc
Q 014154          332 TRQLLSAVFLKQHLNEVVFDSAFADKEV-A--NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~--~~~~~d~~i~~~~~~~~~  378 (430)
                      +++.+..+.+..    .++++++++|++ +  ++...++.|.++|.....
T Consensus       320 t~kv~~~i~vg~----~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          320 TGERLAKFEMGH----EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             TCCEEEEEEEEE----EECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCeEEEEEECCC----CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence            999999976543    368999999997 4  334568999999987644

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.42  E-value=5.4e-10  Score=98.67  Aligned_cols=211  Identities=13%  Similarity=0.059  Sum_probs=137.9

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  204 (430)
                      .+++...++.+..|+...         +.+..+..  ...+.++++++++++++ +. ++.|.+||.++++.........
T Consensus        27 l~~~d~~~~~i~~~d~~~---------~~~~~~~~--~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~   93 (297)
T 3g4e_A           27 LLFVDIPAKKVCRWDSFT---------KQVQRVTM--DAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSAVVLATVDN   93 (297)
T ss_dssp             EEEEETTTTEEEEEETTT---------CCEEEEEC--SSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEEEEEEECCT
T ss_pred             EEEEECCCCEEEEEECCC---------CcEEEEeC--CCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcEEEEEecCC
Confidence            455556667777776432         23445543  46789999999999555 44 5689999998876543222111


Q ss_pred             CCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEE
Q 014154          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI  275 (430)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~  275 (430)
                      ..     ....++.+++  +|+|+++++....         ..-.||.+..... +..+..+......++|+|+++.|+.
T Consensus        94 ~~-----~~~~~~di~~--d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv  165 (297)
T 3g4e_A           94 DK-----KNNRFNDGKV--DPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYY  165 (297)
T ss_dssp             TC-----SSEEEEEEEE--CTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEE
T ss_pred             CC-----CCCCCCCEEE--CCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEE
Confidence            10     1145788898  8899876654321         2234444443222 2233333345689999999987755


Q ss_pred             E-eCCCcEEEEEc--cCCeE-----EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccc
Q 014154          276 G-NGSGDLASVDI--RTGKL-----LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNE  347 (430)
Q Consensus       276 ~-~~d~~i~iwd~--~~~~~-----~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  347 (430)
                      + +.++.|.+||+  .++..     ...+..+ ...+..++++++|.+.++....+.|.+||..+++.+..+.+  + ..
T Consensus       166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~--p-~~  241 (297)
T 3g4e_A          166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL--P-VD  241 (297)
T ss_dssp             EEGGGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC--S-SS
T ss_pred             ecCCCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC--C-CC
Confidence            4 55788999987  45543     2223332 45678999999998877777788899999999999888543  3 23


Q ss_pred             eEEeeecc-ccccc
Q 014154          348 VVFDSAFA-DKEVA  360 (430)
Q Consensus       348 ~v~~~~~s-~~g~~  360 (430)
                      .+++++|. |+++.
T Consensus       242 ~~t~~~f~g~d~~~  255 (297)
T 3g4e_A          242 KTTSCCFGGKNYSE  255 (297)
T ss_dssp             BEEEEEEESGGGCE
T ss_pred             CceEEEEeCCCCCE
Confidence            46899998 78765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.42  E-value=1.2e-10  Score=103.60  Aligned_cols=239  Identities=9%  Similarity=0.012  Sum_probs=149.7

Q ss_pred             eeeecCCCCCceeEE-------eecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEE
Q 014154           56 AASIDDSQNDPLLAV-------ARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT  128 (430)
Q Consensus        56 ~~~~~~~p~g~~l~~-------g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  128 (430)
                      .+.+  .++|.++++       +..++.|.+||..+++.......    ........+.++.+.+..        +.+..
T Consensus        22 ~~~~--~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~----~~~~~~~~~~~i~~~~~~--------g~l~v   87 (314)
T 1pjx_A           22 GPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP----EVNGYGGIPAGCQCDRDA--------NQLFV   87 (314)
T ss_dssp             EEEE--CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC----EETTEECCEEEEEECSSS--------SEEEE
T ss_pred             CceE--CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec----ccCCCCCCCceEEEecCC--------CcEEE
Confidence            4445  467877777       57789999999877764322110    000011244445543221        24444


Q ss_pred             EccCCeeEEEEeeecCccccCCCcceEEe-e-e---cCCCceEEEEEcCCCCEEEEEeCC---------------CeEEE
Q 014154          129 CTTKGKASMRSIEVTKVSAESSCSTVKSW-N-V---CASGTIAFSKVDISEKFSLFGGKG---------------VEVNV  188 (430)
Q Consensus       129 ~~~~g~~~v~~~~~~~~~~~~~~~~i~~~-~-~---~~~~~i~~~~~~~~~~~l~~~~~d---------------~~i~~  188 (430)
                      +...+.+.+|+.. .         .+..+ . .   .....+.+++++++++++++...+               +.|..
T Consensus        88 ~~~~~~l~~~d~~-g---------~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~  157 (314)
T 1pjx_A           88 ADMRLGLLVVQTD-G---------TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             EETTTEEEEEETT-S---------CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             EECCCCEEEEeCC-C---------CEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEE
Confidence            4444456666543 1         22222 1 1   112357899999999887776554               56777


Q ss_pred             EECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeec----CCCCEEEEE-eCCCcEEEEECC-CCCc----ceEEEeecC
Q 014154          189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSI----DDHRKFVAG-TNDHQVRLYDTS-AQRR----PVMSFDFRE  258 (430)
Q Consensus       189 ~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~l~s~-~~dg~i~iwd~~-~~~~----~~~~~~~~~  258 (430)
                      |+.. ++.......          ......+++  +    ++++.|+.+ ..++.|.+||+. .+..    ....+..+.
T Consensus       158 ~~~~-g~~~~~~~~----------~~~~~~i~~--~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~  224 (314)
T 1pjx_A          158 FTTD-GQMIQVDTA----------FQFPNGIAV--RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH  224 (314)
T ss_dssp             ECTT-SCEEEEEEE----------ESSEEEEEE--EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred             ECCC-CCEEEeccC----------CCCcceEEE--ecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence            7765 443322111          133567788  7    888665554 567899999976 3221    112223332


Q ss_pred             -CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE-EEeCCCcEEEEECCC
Q 014154          259 -TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA-SCGLDSYLRFWDIKT  332 (430)
Q Consensus       259 -~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~dg~i~iwd~~~  332 (430)
                       ..+..++++++|+++++...++.|.+||..+++.+..+..+ ...+.+++|+|++..|+ +...++.|..|++..
T Consensus       225 ~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          225 EGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             SCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC-CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence             56788999999988888778899999999878776677665 57899999999998554 445667899999864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.41  E-value=4.1e-09  Score=92.79  Aligned_cols=266  Identities=8%  Similarity=0.020  Sum_probs=161.2

Q ss_pred             cceeeec-CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           15 LRALTFD-SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      .+++.++ .++.|.+|+.. +     ++.. +...........+..  .++|.++++...++.|..||.. ++. ..+..
T Consensus        31 g~l~v~~~~~~~v~~~~~~-~-----~~~~-~~~~~~~~~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~   99 (300)
T 2qc5_A           31 GKVWFTQHKANKISSLDQS-G-----RIKE-FEVPTPDAKVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGF-TEYPL   99 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-S-----CEEE-EECSSTTCCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCE-EEEEC
T ss_pred             CCEEEEcCCCCeEEEECCC-C-----ceEE-EECCCCCCcceeEEE--CCCCCEEEEecCCCeEEEECCC-CCe-EEecC
Confidence            4455554 56788888877 4     3322 211111223455556  5778777766667899999986 553 22221


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec-CCCceEEEEEcC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC-ASGTIAFSKVDI  172 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~  172 (430)
                      .      .....+..+.+-+. .       ..+++...++.+..++..          +.+..+... ....+..+++++
T Consensus       100 ~------~~~~~~~~i~~~~~-g-------~l~v~~~~~~~i~~~~~~----------g~~~~~~~~~~~~~~~~i~~d~  155 (300)
T 2qc5_A          100 P------QPDSGPYGITEGLN-G-------DIWFTQLNGDRIGKLTAD----------GTIYEYDLPNKGSYPAFITLGS  155 (300)
T ss_dssp             S------STTCCEEEEEECST-T-------CEEEEETTTTEEEEECTT----------SCEEEEECSSTTCCEEEEEECT
T ss_pred             C------CCCCCCccceECCC-C-------CEEEEccCCCeEEEECCC----------CCEEEccCCCCCCCceeEEECC
Confidence            0      01134444554322 1       244444445666665432          244444333 345688999999


Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  252 (430)
                      ++++.++...++.|..||. +++... +....       ....+..+++  .+++.+.++....+.|.+||. ++.....
T Consensus       156 ~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~-------~~~~~~~i~~--d~~g~l~v~~~~~~~i~~~~~-~g~~~~~  223 (300)
T 2qc5_A          156 DNALWFTENQNNSIGRITN-TGKLEE-YPLPT-------NAAAPVGITS--GNDGALWFVEIMGNKIGRITT-TGEISEY  223 (300)
T ss_dssp             TSSEEEEETTTTEEEEECT-TCCEEE-EECSS-------TTCCEEEEEE--CTTSSEEEEETTTTEEEEECT-TCCEEEE
T ss_pred             CCCEEEEecCCCeEEEECC-CCcEEE-eeCCC-------CCCCcceEEE--CCCCCEEEEccCCCEEEEEcC-CCcEEEE
Confidence            9996666666788999998 444432 21111       0145788888  788887777666778999998 3332122


Q ss_pred             EEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE-eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          253 SFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL-GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       253 ~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      .+..+...+.++++++++++.++...++.|..||. +++.. ..+... ...+.++++.++|.+.++.. . .|..+|.+
T Consensus       224 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCST-TCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCcc-CCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            22334567899999999986666656789999998 45443 223322 45688999999998665544 4 67777653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.41  E-value=8.5e-11  Score=117.47  Aligned_cols=196  Identities=10%  Similarity=-0.020  Sum_probs=131.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCe--------------EEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCE
Q 014154          166 AFSKVDISEKFSLFGGKGVE--------------VNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~--------------i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (430)
                      ..++|+|+ +.|+.++.++.              |++|++.++..  ...+....       +...+..+.|  +|+|++
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~-------~~~~~~~~~~--SpDG~~  281 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE-------LPKRGHGASV--SSDGRW  281 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT-------CTTCEEEEEE--CTTSCE
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC-------CCeEEEEEEE--CCCCCE
Confidence            46889999 99988876654              89999977652  12222211       1135778888  899998


Q ss_pred             EEEEeCCC-----cEEEEECCCCCcc-eEEEeecCCCeEEEEecCCCCEEEEEeCC----CcEEEEEccCC--eEEeeee
Q 014154          230 FVAGTNDH-----QVRLYDTSAQRRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTG--KLLGCFI  297 (430)
Q Consensus       230 l~s~~~dg-----~i~iwd~~~~~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~--~~~~~~~  297 (430)
                      |+..+.++     .|++||+.++... ...+..+...+.... +|+++.|+..+.+    +.|.+||+.++  +....+.
T Consensus       282 l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~  360 (741)
T 1yr2_A          282 VVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP  360 (741)
T ss_dssp             EEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC
T ss_pred             EEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec
Confidence            88877544     8999999875222 455555555555553 4889888887764    45999999874  3333343


Q ss_pred             CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC-CCceeeEEEeeccccceEEeeeccccccc-c----ccCCCCceEe
Q 014154          298 GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK-TRQLLSAVFLKQHLNEVVFDSAFADKEVA-N----AAADAPMLEI  371 (430)
Q Consensus       298 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~----~~~~d~~i~~  371 (430)
                      .+ ...+..+.|+ ++.++++...|+..+||.+. +++.+..+  ..+....+..++++|++.. +    +....+.+.+
T Consensus       361 ~~-~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l--~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~  436 (741)
T 1yr2_A          361 ES-KDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAV--SLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLA  436 (741)
T ss_dssp             CC-SSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEEC--BCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEE
T ss_pred             CC-CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeec--cCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            33 5567778887 56678888889987777554 45555553  2222345688999999875 3    3345688999


Q ss_pred             cCCCC
Q 014154          372 QNGND  376 (430)
Q Consensus       372 ~~~~~  376 (430)
                      |+...
T Consensus       437 ~d~~t  441 (741)
T 1yr2_A          437 LDPAT  441 (741)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            98765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.40  E-value=6.5e-10  Score=101.83  Aligned_cols=275  Identities=13%  Similarity=0.047  Sum_probs=167.6

Q ss_pred             CceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEEecCCCCcccceeec
Q 014154           24 GLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        24 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      +.|.+.|..+.     +++.++..-..+    .+.+  +|||++|+++.          .++.|.++|..+++.+..+..
T Consensus        99 ~~VsVID~~t~-----~vv~~I~vG~~P----gia~--SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v  167 (426)
T 3c75_H           99 TQQFVIDGSTG-----RILGMTDGGFLP----HPVA--AEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIEL  167 (426)
T ss_dssp             EEEEEEETTTT-----EEEEEEEECSSC----EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEE
T ss_pred             CeEEEEECCCC-----EEEEEEECCCCC----ceEE--CCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEEC
Confidence            79999999997     777666533333    3444  78888888876          467899999999988777653


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc--CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      -....+... .....+.+.+..        ..++.+..  ++.+.|.++....        .+..+.+.  +.   ....
T Consensus       168 ~g~~r~~~g-~~P~~~~~spDG--------k~lyV~n~~~~~~VsVID~~t~k--------vv~~I~v~--g~---~~~~  225 (426)
T 3c75_H          168 PDAPRFLVG-TYQWMNALTPDN--------KNLLFYQFSPAPAVGVVDLEGKT--------FDRMLDVP--DC---YHIF  225 (426)
T ss_dssp             TTCCCCCBS-CCGGGSEECTTS--------SEEEEEECSSSCEEEEEETTTTE--------EEEEEECC--SE---EEEE
T ss_pred             CCccccccC-CCcceEEEcCCC--------CEEEEEecCCCCeEEEEECCCCe--------EEEEEEcC--Cc---eeec
Confidence            100000000 011112232222        24444332  4566666654322        23333321  11   1223


Q ss_pred             CC-CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc
Q 014154          172 IS-EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       172 ~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      |+ ...+++.+.||.+.+.++.+++...... .   .+..........+.|  .+++..++..+..+.|.+.|+......
T Consensus       226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~---~~~v~~~p~~~~~~~--~~dg~~~~~~s~~g~V~ViD~~~~~~~  299 (426)
T 3c75_H          226 PASPTVFYMNCRDGSLARVDFADGETKVTNT-E---VFHTEDELLINHPAF--SLRSGRLVWPTYTGKIFQADLTAEGAT  299 (426)
T ss_dssp             EEETTEEEEEETTSSEEEEECCTTCCEEEEC-C---CCSCTTSCBCSCCEE--CTTTCEEEEEBTTSEEEEEEECSSCEE
T ss_pred             cCCCcEEEEEcCCCCEEEEECCCCcEEEEee-e---eeccCCCceeeEeee--cCCCCEEEEEeCCCcEEEEeccCCceE
Confidence            32 3556667778888888885555443211 0   000000011123456  778887777788899999998753310


Q ss_pred             e-EEEee----------cCCCeEEEEecCCCCEEEEEeC----------CCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154          251 V-MSFDF----------RETPIKAVAEEPDSFNIYIGNG----------SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       251 ~-~~~~~----------~~~~i~~~~~sp~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  309 (430)
                      + ..+..          .......++++|+++.+++...          ++.|.++|+.+.+.+.++...  .....+.|
T Consensus       300 v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~  377 (426)
T 3c75_H          300 FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINV  377 (426)
T ss_dssp             ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEE
T ss_pred             EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEE
Confidence            0 11110          0012223689999988877653          357999999999999999763  46899999


Q ss_pred             cCCCC-eEEEEe-CCCcEEEEECCCCceeeEE
Q 014154          310 HPTLP-IIASCG-LDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       310 ~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~  339 (430)
                      +|+++ +++++. .++.|.|+|+.+++.+.++
T Consensus       378 spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          378 SQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             ccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            99998 888887 5899999999999999885

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.38  E-value=1.7e-10  Score=115.30  Aligned_cols=239  Identities=11%  Similarity=-0.012  Sum_probs=146.2

Q ss_pred             eeeeeecCCCCCceeEEeecC-----CeEEEecCCCCccccee-ecc--CCCCCCCCCCceEEEEEeecCcccccccCce
Q 014154           54 VLAASIDDSQNDPLLAVARKN-----GLTDILNPLNGDLRVAI-SNA--GDSGAQPEDDGIVGLHLFKRQREESSSRSRT  125 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~-~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  125 (430)
                      +..+.|  +|||++||.+..+     ..|++||+.+++.+... ...  ....+++. +                    .
T Consensus       165 ~~~~~~--SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~--------------------~  221 (741)
T 1yr2_A          165 LDAWAA--SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-D--------------------A  221 (741)
T ss_dssp             EEEEEE--CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-S--------------------E
T ss_pred             EEeEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-C--------------------E
Confidence            455666  8999999887644     46999999988865431 111  12222222 2                    2


Q ss_pred             EEEEccC--------------CeeEEEEeeecCccccCCCcceEEeeecC-CCceEEEEEcCCCCEEEEEeCCC-----e
Q 014154          126 LLTCTTK--------------GKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVDISEKFSLFGGKGV-----E  185 (430)
Q Consensus       126 ~~~~~~~--------------g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~-----~  185 (430)
                      ++.+..+              ..+.+|.+....      .....++.... ...+..+.|+|+|++|+..+.++     .
T Consensus       222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~------~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~  295 (741)
T 1yr2_A          222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQ------SADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNT  295 (741)
T ss_dssp             EEEEECCCC--------CCCCCEEEEEETTSCG------GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCE
T ss_pred             EEEEEecCcccccccccCCCCCEEEEEECCCCc------hhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcce
Confidence            2222222              235555543211      11233444322 23478899999999998877544     8


Q ss_pred             EEEEECCCC--eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----CcEEEEECCCC-CcceEEEeecC
Q 014154          186 VNVWDLDKC--EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQ-RRPVMSFDFRE  258 (430)
Q Consensus       186 i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~-~~~~~~~~~~~  258 (430)
                      |++||+.++  +....+..+.         ..+... +  .|++..|+..+.+    +.|.+||+.++ ......+..+.
T Consensus       296 l~~~d~~~~~~~~~~~l~~~~---------~~~~~~-~--~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~  363 (741)
T 1yr2_A          296 VHVARVTNGKIGPVTALIPDL---------KAQWDF-V--DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK  363 (741)
T ss_dssp             EEEEEEETTEECCCEEEECSS---------SSCEEE-E--EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS
T ss_pred             EEEEECCCCCCcccEEecCCC---------CceEEE-E--eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC
Confidence            999999876  3123333222         122222 2  3678888777764    45999999874 23334444455


Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEcc-CCeEEeeeeCCCCCCeEEEEecCCCCeEEEE----eCCCcEEEEECCCC
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIR-TGKLLGCFIGKCSGSIRSIARHPTLPIIASC----GLDSYLRFWDIKTR  333 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~----~~dg~i~iwd~~~~  333 (430)
                      ..+..+.++ ++.++++...|+..+||.+. +++....+..+....+..+.++|++..|+..    ...++|++||+.++
T Consensus       364 ~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          364 DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            567778887 56678888888887777554 4566666654325678899999998766533    23478999999887


Q ss_pred             c
Q 014154          334 Q  334 (430)
Q Consensus       334 ~  334 (430)
                      +
T Consensus       443 ~  443 (741)
T 1yr2_A          443 K  443 (741)
T ss_dssp             E
T ss_pred             c
Confidence            6

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.35  E-value=2.2e-10  Score=102.67  Aligned_cols=295  Identities=13%  Similarity=0.059  Sum_probs=182.4

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      ....++.++.++.|..|| .++     +.+..+..+...  +.++..  .++|. |.+++.+  |..+|. +++.+..+.
T Consensus        29 ~~g~l~v~t~~~~l~~~d-~~g-----~~~~~~~~~~~~--~~~~~~--~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~   94 (330)
T 3hxj_A           29 KNGTIYLGSSNKNLYAIN-TDG-----SVKWFFKSGEII--ECRPSI--GKDGT-IYFGSDK--VYAINP-DGTEKWRFD   94 (330)
T ss_dssp             TTSCEECSSTTTTTEEEC-TTS-----CEEESSCGGGEE--EECCEE--TTTTE-ECCSSCE--EEEECC-CGGGGGGSC
T ss_pred             cCCeEEEEcCCCEEEEEC-CCC-----cEEEEEecCCCc--ccceEE--ecCCc-EEEecCc--EEEECC-CCcEEEEEE
Confidence            356788888899999999 665     444333322221  233333  33454 5555554  888886 666655443


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC-CCceEEEEEc
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-SGTIAFSKVD  171 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-~~~i~~~~~~  171 (430)
                      ...        .......+.   .       +.+..++.++.+..++.. .         . ..|.... ...+.++...
T Consensus        95 ~~~--------~~~~~~~~~---~-------~~l~v~t~~~~l~~~d~~-g---------~-~~~~~~~~~~~~~~~~~~  145 (330)
T 3hxj_A           95 TKK--------AIVSDFTIF---E-------DILYVTSMDGHLYAINTD-G---------T-EKWRFKTKKAIYATPIVS  145 (330)
T ss_dssp             C-------------CCEEEE---T-------TEEEEECTTSEEEEECTT-S---------C-EEEEEECSSCCCSCCEEC
T ss_pred             CCC--------CcccCceEE---C-------CEEEEEecCCEEEEEcCC-C---------C-EEEEEcCCCceeeeeEEc
Confidence            210        011111111   2       577777777777666533 1         2 2333322 2334556666


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  251 (430)
                      +++. |+.++.++.|..||.. ++..+.+....         ..+.++.+  .+++.+.+ ++  +.|..|| .++.. .
T Consensus       146 ~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~~--d~~g~l~v-~t--~~l~~~d-~~g~~-~  207 (330)
T 3hxj_A          146 EDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND---------AITSAASI--GKDGTIYF-GS--DKVYAIN-PDGTE-K  207 (330)
T ss_dssp             TTSC-EEEECTTSEEEEECTT-SCEEEEEECSS---------CCCSCCEE--CTTCCEEE-ES--SSEEEEC-TTSCE-E
T ss_pred             CCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC---------CceeeeEE--cCCCEEEE-Ee--CEEEEEC-CCCcE-E
Confidence            6666 5567888999999998 77776665332         33555556  56666444 44  8899999 55443 4


Q ss_pred             EEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       252 ~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      .........+.++...+++ .|++++.++.|..+|. +++.+..+... ...+..+.+.+++ .|..++.+|.|..+|. 
T Consensus       208 ~~~~~~~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-  282 (330)
T 3hxj_A          208 WNFYAGYWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTG-KRIESSPVIGNTD-TIYFGSYDGHLYAINP-  282 (330)
T ss_dssp             EEECCSSCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECS-SCCCSCCEECTTS-CEEEECTTCEEEEECT-
T ss_pred             EEEccCCcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCC-CCccccceEcCCC-eEEEecCCCCEEEECC-
Confidence            4555455668888888877 5666777888888884 66666666654 3444556666566 5677788888999996 


Q ss_pred             CCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          332 TRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      +++.+..+.+.   ...+.++...++|.+..++.+|.+.+.....
T Consensus       283 ~g~~~~~~~~~---~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          283 DGTEKWNFETG---SWIIATPVIDENGTIYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             TSCEEEEEECS---SCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred             CCcEEEEEEcC---CccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence            67777664332   3345677777899998899999999876655

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.35  E-value=2.7e-11  Score=109.43  Aligned_cols=168  Identities=10%  Similarity=0.022  Sum_probs=117.7

Q ss_pred             ceEEEEccCCeeEEEEeeecCcccc---CCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEee
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAE---SSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTA  200 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~---~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~  200 (430)
                      +.+++++.+ .+.||++..-..+..   .........  .... |..++|  ++++|+++ .++.|++||+.+.......
T Consensus        50 gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~  122 (388)
T 1xip_A           50 SLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTV  122 (388)
T ss_dssp             TEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEE
T ss_pred             CEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCcc
Confidence            477777766 555687643221000   001122222  3345 999999  89999998 8899999999765543333


Q ss_pred             CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154          201 KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (430)
Q Consensus       201 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~  280 (430)
                      ..+.         ..+.++.+. .|   .+++++.||.|.+||+.++.. . .   +...|+|++|||+|  ++.|..||
T Consensus       123 ~~~~---------~~v~~i~~~-~p---~~av~~~dG~L~v~dl~~~~~-~-~---~~~~Vs~v~WSpkG--~~vg~~dg  182 (388)
T 1xip_A          123 TSFE---------KPVFQLKNV-NN---TLVILNSVNDLSALDLRTKST-K-Q---LAQNVTSFDVTNSQ--LAVLLKDR  182 (388)
T ss_dssp             EECS---------SCEEEEEEC-SS---EEEEEETTSEEEEEETTTCCE-E-E---EEESEEEEEECSSE--EEEEETTS
T ss_pred             ceee---------cceeeEEec-CC---CEEEEECCCCEEEEEccCCcc-c-c---ccCCceEEEEcCCc--eEEEEcCC
Confidence            3332         336677664 22   388889999999999997553 2 2   33589999999999  67899999


Q ss_pred             cEEEEEccCCeE--Eeee------e---CCCCCCeEEEEecCCCCeEEEE
Q 014154          281 DLASVDIRTGKL--LGCF------I---GKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       281 ~i~iwd~~~~~~--~~~~------~---~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      .+++|+...++.  ..++      .   +| ...|.+|.|.+++.++++=
T Consensus       183 ~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~-~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          183 SFQSFAWRNGEMEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             CEEEEEEETTEEEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEEEE
T ss_pred             cEEEEcCCCccccccceecCCcccccccCC-CeeEEEEEEecCCeEEEEE
Confidence            999999988875  5566      2   24 6789999999999888764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.31  E-value=2.3e-09  Score=98.96  Aligned_cols=224  Identities=9%  Similarity=-0.071  Sum_probs=141.9

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEeeCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKP  202 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~  202 (430)
                      .+++...++.+++|+...         +.+..+... ..... ++|+++++.|+++..++  .|.+|+...+.....+..
T Consensus       144 lyv~d~~~~~I~~id~~~---------g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~  212 (409)
T 3hrp_A          144 VLAYQRDDPRVRLISVDD---------NKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ  212 (409)
T ss_dssp             EEEEETTTTEEEEEETTT---------TEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE
T ss_pred             EEEEecCCCcEEEEECCC---------CEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeee
Confidence            444445556777776431         244444322 23334 89999999999888766  799998876544333300


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE-----eecCCCe--EEEEecCC-CCEEE
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF-----DFRETPI--KAVAEEPD-SFNIY  274 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~i--~~~~~sp~-~~~l~  274 (430)
                      ...     .....+.++++  +|++..|+.+..++.|+.||+.++.  ...+     .++...-  ..++|+|+ +.+++
T Consensus       213 ~~~-----~~~~~p~~iav--~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          213 LGS-----TFSGKIGAVAL--DETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             CCT-----TSCSCCCBCEE--CTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             ccc-----hhcCCcEEEEE--eCCCCeEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            000     01145678899  7844455557778899999998754  2333     1121222  39999995 55555


Q ss_pred             EEeCCCcEEEEEccCCeEEeeeeCCC--------------CCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEE
Q 014154          275 IGNGSGDLASVDIRTGKLLGCFIGKC--------------SGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       275 ~~~~d~~i~iwd~~~~~~~~~~~~~~--------------~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~  339 (430)
                      +-..++.|+.|+....  +..+.++.              -.....++++|+|.++++-. .++.|+.|++.++..... 
T Consensus       284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~-  360 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV-  360 (409)
T ss_dssp             EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE-
T ss_pred             EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE-
Confidence            5566789999997543  23333321              13478999999999777777 789999999877764432 


Q ss_pred             Eeeccc--------------cceEEeeeccccccc-cccCCCCceEecC
Q 014154          340 FLKQHL--------------NEVVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       340 ~~~~~~--------------~~~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                        .++.              -.....++++++|.+ ++-...+.|+.+.
T Consensus       361 --~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          361 --AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             --EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             --eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence              2220              022578999999887 7777777777654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.31  E-value=5.1e-10  Score=102.53  Aligned_cols=273  Identities=10%  Similarity=0.005  Sum_probs=173.7

Q ss_pred             CCCCceeEEeecC-----CeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEc------
Q 014154           62 SQNDPLLAVARKN-----GLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT------  130 (430)
Q Consensus        62 ~p~g~~l~~g~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------  130 (430)
                      .|+++++++....     +.|.++|..+++.+..+..-        ..+  .+.+.+...        .++.+.      
T Consensus        81 ~~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG--------~~P--gia~SpDgk--------~lyVan~~~~~~  142 (426)
T 3c75_H           81 APDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG--------FLP--HPVAAEDGS--------FFAQASTVFERI  142 (426)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC--------SSC--EEEECTTSS--------CEEEEEEEEEET
T ss_pred             CCCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC--------CCC--ceEECCCCC--------EEEEEecccccc
Confidence            4666766665442     79999999999988887641        112  455544433        444333      


Q ss_pred             ----cCCeeEEEEeeecCccccCCCcceEEeeec------CCCceEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeE
Q 014154          131 ----TKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGGK--GVEVNVWDLDKCEKIW  198 (430)
Q Consensus       131 ----~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~  198 (430)
                          .++.+.+++.....        .+....+.      .......+.++|++++|+++..  ++.|.++|+.+.+.+.
T Consensus       143 ~~G~~~~~VsviD~~t~~--------vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~  214 (426)
T 3c75_H          143 ARGKRTDYVEVFDPVTFL--------PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDR  214 (426)
T ss_dssp             TEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             ccCCCCCEEEEEECCCCc--------EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEE
Confidence                34566666644221        23333222      1233456899999999998864  5789999999999888


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE----EeecCCCe-EEEEecCCCCEE
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS----FDFRETPI-KAVAEEPDSFNI  273 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~~i-~~~~~sp~~~~l  273 (430)
                      ++....           .  .... +.....+++.+.||.+.+.++.+++. ...    +.....++ ..+.|.+++..+
T Consensus       215 ~I~v~g-----------~--~~~~-p~g~~~~v~~~~dG~~~~V~~~~~~v-~~~~~~~~~v~~~p~~~~~~~~~dg~~~  279 (426)
T 3c75_H          215 MLDVPD-----------C--YHIF-PASPTVFYMNCRDGSLARVDFADGET-KVTNTEVFHTEDELLINHPAFSLRSGRL  279 (426)
T ss_dssp             EEECCS-----------E--EEEE-EEETTEEEEEETTSSEEEEECCTTCC-EEEECCCCSCTTSCBCSCCEECTTTCEE
T ss_pred             EEEcCC-----------c--eeec-cCCCcEEEEEcCCCCEEEEECCCCcE-EEEeeeeeccCCCceeeEeeecCCCCEE
Confidence            766421           1  1121 11235666777888888888854332 221    11111221 235678998888


Q ss_pred             EEEeCCCcEEEEEccCCeEE--eeeeC---C------CCCCeEEEEecCCCCeEEEEeC----------CCcEEEEECCC
Q 014154          274 YIGNGSGDLASVDIRTGKLL--GCFIG---K------CSGSIRSIARHPTLPIIASCGL----------DSYLRFWDIKT  332 (430)
Q Consensus       274 ~~~~~d~~i~iwd~~~~~~~--~~~~~---~------~~~~v~~i~~~~~~~~l~s~~~----------dg~i~iwd~~~  332 (430)
                      +..+..+.|.+.|+......  ..+..   .      .......++++|++..++....          ++.|.++|+.+
T Consensus       280 ~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T  359 (426)
T 3c75_H          280 VWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET  359 (426)
T ss_dssp             EEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             EEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC
Confidence            87788899999998765431  11110   0      0112223689999987776642          35799999999


Q ss_pred             CceeeEEEeeccccceEEeeecccccc-c-cccC-CCCceEecCCCCCcc
Q 014154          333 RQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAA-DAPMLEIQNGNDTQE  379 (430)
Q Consensus       333 ~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~-~d~~i~~~~~~~~~~  379 (430)
                      ++.+.++.+..    ..++++|+|||+ + ++.. .++.|.++|......
T Consensus       360 ~kvv~~I~vg~----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kv  405 (426)
T 3c75_H          360 GERINKIELGH----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEE  405 (426)
T ss_dssp             CCEEEEEEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             CeEEEEEECCC----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence            99999975543    258899999998 5 4444 589999999877543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.30  E-value=9.3e-09  Score=91.96  Aligned_cols=207  Identities=8%  Similarity=-0.032  Sum_probs=134.9

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  204 (430)
                      .+++...++.+..|+..         .+.++.|..  ...+.+++++++++++++. .+ .|.+||..+++.........
T Consensus        63 l~~~d~~~~~i~~~d~~---------~~~~~~~~~--~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~  129 (326)
T 2ghs_A           63 AWWFNILERELHELHLA---------SGRKTVHAL--PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELES  129 (326)
T ss_dssp             EEEEEGGGTEEEEEETT---------TTEEEEEEC--SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSST
T ss_pred             EEEEECCCCEEEEEECC---------CCcEEEEEC--CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCC
Confidence            55566667777777643         124455543  4678999999998877654 44 59999998776543222111


Q ss_pred             CCCCCCcCCcceeEEEEeecCCCCEEEEEeC------CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-e
Q 014154          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-N  277 (430)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~  277 (430)
                      .     .....+..+++  +|+|+++++...      .+.|..++  +++  +..+..+......++|+|+++.|+.+ +
T Consensus       130 ~-----~~~~~~~~i~~--d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          130 D-----LPGNRSNDGRM--HPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             T-----CTTEEEEEEEE--CTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred             C-----CCCCCCCCEEE--CCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence            0     01145788899  889987665442      24566666  333  23333333457899999999877655 4


Q ss_pred             CCCcEEEEEcc--CC-e-----EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceE
Q 014154          278 GSGDLASVDIR--TG-K-----LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVV  349 (430)
Q Consensus       278 ~d~~i~iwd~~--~~-~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  349 (430)
                      .++.|.+||+.  ++ +     ....+... ...+..+++.++|.+.++...++.|.+||. +++.+..+.+  + ...+
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~-~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~--~-~~~~  273 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV--P-GKQT  273 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC--S-CSBE
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCC-CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC--C-CCCc
Confidence            56889999986  55 3     22233322 456788999999987777766788999998 5777766432  3 2346


Q ss_pred             Eeeecc-ccccc
Q 014154          350 FDSAFA-DKEVA  360 (430)
Q Consensus       350 ~~~~~s-~~g~~  360 (430)
                      .+++|+ +++..
T Consensus       274 ~~~af~g~d~~~  285 (326)
T 2ghs_A          274 TCPAFIGPDASR  285 (326)
T ss_dssp             EEEEEESTTSCE
T ss_pred             EEEEEecCCCCE
Confidence            899998 88664

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.28  E-value=1.5e-09  Score=101.90  Aligned_cols=265  Identities=11%  Similarity=0.029  Sum_probs=171.4

Q ss_pred             eEEeecCCeEEEecCCCCcccceeeccCCCCCCC---------------------------------CCCceEEEEEeec
Q 014154           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP---------------------------------EDDGIVGLHLFKR  114 (430)
Q Consensus        68 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~i~~~~~~~~  114 (430)
                      +.+|+..|.|+|+-+.+++.+..+..+++....+                                 ++..-..+..-+.
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            5668889999999999998888877644433221                                 0000111222111


Q ss_pred             CcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEE-c-CCCCEEEEEe-----------
Q 014154          115 QREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV-D-ISEKFSLFGG-----------  181 (430)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~-~-~~~~~l~~~~-----------  181 (430)
                      ..    ..+-.++....++.+.+.++....        .+++..+........+++ + |++.++++++           
T Consensus        98 ~~----DG~~lfVnd~~~~rVavIdl~t~~--------~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~  165 (595)
T 1fwx_A           98 KY----DGRFLFMNDKANTRVARVRCDVMK--------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT  165 (595)
T ss_dssp             EE----EEEEEEEEETTTTEEEEEETTTTE--------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred             Cc----CCCEEEEEcCCCCEEEEEECCCce--------EeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence            11    011233444445567777665332        455556666677889998 5 8999998885           


Q ss_pred             -------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-----------------
Q 014154          182 -------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----------------  237 (430)
Q Consensus       182 -------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----------------  237 (430)
                             .++.+.+.|.++.+..+++....          ....+++  +|++.++++.+.+.                 
T Consensus       166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg----------~pd~~~~--spdGk~~~vt~~~se~~~~i~~~~~~~~d~v  233 (595)
T 1fwx_A          166 NMEDVANYVNVFTAVDADKWEVAWQVLVSG----------NLDNCDA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHI  233 (595)
T ss_dssp             STTCGGGEEEEEEEEETTTTEEEEEEEESS----------CCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCCSEEEE
T ss_pred             ccccccccCceEEEEECCCCeEEEEEEeCC----------CccceEE--CCCCCEEEEEecCcccCcchhhccccccceE
Confidence                   34579999999988888765421          1234456  78888888877553                 


Q ss_pred             ---------------------cEEEEECCC--CCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCe--
Q 014154          238 ---------------------QVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK--  291 (430)
Q Consensus       238 ---------------------~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~--  291 (430)
                                           .|.+.|..+  +...+..+... ....++.++|||+++++++ .+++|.++|+.+.+  
T Consensus       234 ~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~  312 (595)
T 1fwx_A          234 VVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV  312 (595)
T ss_dssp             EEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH
T ss_pred             EEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccc
Confidence                                 477777776  33224445433 3557899999999887766 67899999998653  


Q ss_pred             ----------EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC----------CceeeEEEee---ccccce
Q 014154          292 ----------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT----------RQLLSAVFLK---QHLNEV  348 (430)
Q Consensus       292 ----------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~---~~~~~~  348 (430)
                                .+.++..  ......++|+|+|...++.-.|+.|.+||+.+          .+.+.++...   +| ...
T Consensus       313 ~~~~l~~~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh-~~~  389 (595)
T 1fwx_A          313 FYENADPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH-LKT  389 (595)
T ss_dssp             HHSCCCGGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE-EEE
T ss_pred             cccccCcccceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccc-cee
Confidence                      3444443  45688999999994445566899999999987          5566665432   33 111


Q ss_pred             EEeeeccccccc
Q 014154          349 VFDSAFADKEVA  360 (430)
Q Consensus       349 v~~~~~s~~g~~  360 (430)
                      ...+.++|||++
T Consensus       390 ~~g~t~~~DGk~  401 (595)
T 1fwx_A          390 VMGETLDATNDW  401 (595)
T ss_dssp             TTTTSTTCCSSE
T ss_pred             ccceEeCCCCCE
Confidence            235578999998

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=6.7e-09  Score=95.82  Aligned_cols=239  Identities=11%  Similarity=0.071  Sum_probs=148.2

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG  133 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  133 (430)
                      ...+.+  .|+|+++++...++.|++||..++.........         .... +.+ ....       +.++.+..++
T Consensus       133 P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~---------~~~~-ia~-~~~g-------~~l~~~d~~~  192 (409)
T 3hrp_A          133 MWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF---------KGGK-PAV-TKDK-------QRVYSIGWEG  192 (409)
T ss_dssp             EEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEETC---------CBCB-CEE-CTTS-------SEEEEEBSST
T ss_pred             ceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeeccC---------CCCc-eeE-ecCC-------CcEEEEecCC
Confidence            345556  578887777777899999999776654333221         1111 233 2222       3566666555


Q ss_pred             --eeEEEEeeecCccccCCCcceEEe-e--ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeC-CCCCCC
Q 014154          134 --KASMRSIEVTKVSAESSCSTVKSW-N--VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAK-PPPKNS  207 (430)
Q Consensus       134 --~~~v~~~~~~~~~~~~~~~~i~~~-~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~  207 (430)
                        .+.+++.....        ..... .  ......+.+++++|++..|+++..++.|+.||..++....... ..... 
T Consensus       193 ~~~I~~~d~~~~~--------~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~-  263 (409)
T 3hrp_A          193 THTVYVYMKASGW--------APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS-  263 (409)
T ss_dssp             TCEEEEEEGGGTT--------CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC-
T ss_pred             CceEEEEEcCCCc--------eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC-
Confidence              44444432110        11122 0  1134567889999966666667778899999998765432200 00000 


Q ss_pred             CCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecC---------------CCeEEEEecCCCC
Q 014154          208 LGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---------------TPIKAVAEEPDSF  271 (430)
Q Consensus       208 ~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------------~~i~~~~~sp~~~  271 (430)
                      ..   ..+...++|  +| ++.++++-..++.|+.|+....   +..+.++.               .....++++|+|+
T Consensus       264 ~~---~~P~~~ia~--~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~  335 (409)
T 3hrp_A          264 LG---TNPGPYLIY--YFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN  335 (409)
T ss_dssp             CC---CSSCCEEEE--ETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred             CC---CCccccEEE--eCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence            00   011128899  77 4666666677889999998752   33443332               3478999999999


Q ss_pred             EEEEEe-CCCcEEEEEccCCeEEeeeeCC--------------CCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          272 NIYIGN-GSGDLASVDIRTGKLLGCFIGK--------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       272 ~l~~~~-~d~~i~iwd~~~~~~~~~~~~~--------------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      ++++-. .++.|+.||+.++... .+.++              .-.....+++++++.++++-..++.|+.+++
T Consensus       336 lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          336 FYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            777777 7899999998788753 33332              0135789999999887787778888888765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.27  E-value=3.8e-09  Score=93.54  Aligned_cols=207  Identities=12%  Similarity=0.043  Sum_probs=133.4

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  204 (430)
                      .+++...++.+..|+.          ++.+..+.. ....+..++++++++++++...++.|.+|+.+ ++.........
T Consensus        59 l~~~d~~~~~i~~~~~----------~g~~~~~~~-~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~  126 (305)
T 3dr2_A           59 LVWSDLVGRRVLGWRE----------DGTVDVLLD-ATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA  126 (305)
T ss_dssp             EEEEETTTTEEEEEET----------TSCEEEEEE-SCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEET
T ss_pred             EEEEECCCCEEEEEeC----------CCCEEEEeC-CCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC
Confidence            4666667777777753          124455543 35678899999999977665566789999986 44322211111


Q ss_pred             CCCCCCcCCcceeEEEEeecCCCCEEEE----EeC-------------CCcEEEEECCCCCcceEEEeecCCCeEEEEec
Q 014154          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVA----GTN-------------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEE  267 (430)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~s  267 (430)
                      ..     ....+..+++  .++|.+.++    |..             .+.|..||..+++. . .+. .......++|+
T Consensus       127 ~~-----~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~-~~~-~~~~p~gl~~s  196 (305)
T 3dr2_A          127 GK-----RLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-Q-RMA-DLDHPNGLAFS  196 (305)
T ss_dssp             TE-----ECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-E-EEE-EESSEEEEEEC
T ss_pred             CC-----ccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-E-EEe-cCCCCcceEEc
Confidence            00     0134677888  889988886    332             25678888765542 2 222 33567889999


Q ss_pred             CCCCEEEEEeCC------CcEEEEEccCCeEE--eeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154          268 PDSFNIYIGNGS------GDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       268 p~~~~l~~~~~d------~~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      |+++.|+++...      +.|.+||+..+...  ..+.......+..++++++|++.+ +..++ |.+|+. +++.+..+
T Consensus       197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~-~g~~~~~~  273 (305)
T 3dr2_A          197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTG-VCVFDS-DGQLLGHI  273 (305)
T ss_dssp             TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSE-EEEECT-TSCEEEEE
T ss_pred             CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCc-EEEECC-CCCEEEEE
Confidence            999988887665      78999998765421  112111134456789999998544 44554 999998 57777765


Q ss_pred             EeeccccceEEeeeccccccc
Q 014154          340 FLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       340 ~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      ....    .+.+++|++++..
T Consensus       274 ~~~~----~~~~~~f~~d~~~  290 (305)
T 3dr2_A          274 PTPG----TASNCTFDQAQQR  290 (305)
T ss_dssp             ECSS----CCCEEEECTTSCE
T ss_pred             ECCC----ceeEEEEeCCCCE
Confidence            4322    3578899998876

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.25  E-value=6.2e-09  Score=95.16  Aligned_cols=260  Identities=10%  Similarity=0.052  Sum_probs=159.8

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ..+++.++.+|.|..+|..++     +.+-.+...........+ .     +..+++++.++.|..+|..+|+.+..+..
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG-----~~~W~~~~~~~~~~~p~~-~-----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~  171 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDG-----TVAWQTKVAGEALSRPVV-S-----DGLVLIHTSNGQLQALNEADGAVKWTVNL  171 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTC-----CEEEEEECSSCCCSCCEE-E-----TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCEEEEEECCCC-----CEEEEEeCCCceEcCCEE-E-----CCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence            367888889999999999987     554333322211111111 1     23588888999999999999998877654


Q ss_pred             cCCCC-CCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc--------
Q 014154           94 AGDSG-AQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT--------  164 (430)
Q Consensus        94 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~--------  164 (430)
                      ..+.. ......++    +.   .       +.++.+..++.+..++.....          .+|.......        
T Consensus       172 ~~~~~~~~~~~~~~----~~---~-------~~v~~g~~~g~l~~~d~~tG~----------~~w~~~~~~~~~~~~~~~  227 (376)
T 3q7m_A          172 DMPSLSLRGESAPT----TA---F-------GAAVVGGDNGRVSAVLMEQGQ----------MIWQQRISQATGSTEIDR  227 (376)
T ss_dssp             CC-----CCCCCCE----EE---T-------TEEEECCTTTEEEEEETTTCC----------EEEEEECCC---------
T ss_pred             CCCceeecCCCCcE----EE---C-------CEEEEEcCCCEEEEEECCCCc----------EEEEEecccCCCCccccc
Confidence            21100 00000111    11   1       466667777777666643221          1343321110        


Q ss_pred             eEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          165 IAFSKVDI--SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       165 i~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      +..+...|  .+..+++++.++.+..+|..+++.++.....           ....+..    ++..|+.++.++.|..+
T Consensus       228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-----------~~~~~~~----~~~~l~~~~~~g~l~~~  292 (376)
T 3q7m_A          228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-----------SVNDFIV----DGNRIYLVDQNDRVMAL  292 (376)
T ss_dssp             --CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-----------CEEEEEE----ETTEEEEEETTCCEEEE
T ss_pred             ccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-----------CCCCceE----ECCEEEEEcCCCeEEEE
Confidence            00011111  3567888888999999999999998886542           2334444    46678888899999999


Q ss_pred             ECCCCCcceEEEe-ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEE-EEecCCCCeEEEEe
Q 014154          243 DTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS-IARHPTLPIIASCG  320 (430)
Q Consensus       243 d~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~-i~~~~~~~~l~s~~  320 (430)
                      |..+++. +.... .....+......  +..|++++.+|.|.++|..+++.+..+... ...+.. ...  .+..|+.++
T Consensus       293 d~~tG~~-~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~-~~~~~~~~~~--~~~~l~v~~  366 (376)
T 3q7m_A          293 TIDGGVT-LWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWINVEDGRFVAQQKVD-SSGFQTEPVA--ADGKLLIQA  366 (376)
T ss_dssp             ETTTCCE-EEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECC-TTCBCSCCEE--ETTEEEEEB
T ss_pred             ECCCCcE-EEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEECCCCcEEEEEecC-CCcceeCCEE--ECCEEEEEe
Confidence            9998764 44433 112223333332  468889999999999999999998877753 233322 222  245788889


Q ss_pred             CCCcEEEEE
Q 014154          321 LDSYLRFWD  329 (430)
Q Consensus       321 ~dg~i~iwd  329 (430)
                      .+|.|+.|+
T Consensus       367 ~~G~l~~~~  375 (376)
T 3q7m_A          367 KDGTVYSIT  375 (376)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCEEEEEe
Confidence            999999987

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.24  E-value=1.1e-08  Score=100.49  Aligned_cols=300  Identities=12%  Similarity=0.063  Sum_probs=173.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcc---------eeeeeecCCCCCceeEEeecCCeEEEecCCCC
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNC---------VLAASIDDSQNDPLLAVARKNGLTDILNPLNG   85 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~   85 (430)
                      .+++.++.++.|.-+|+.++     +.+=++........         ......    .+..|++++.|+.|..+|..+|
T Consensus        67 g~vyv~~~~~~v~AlD~~tG-----~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG  137 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASG-----KELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTG  137 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEECCCCeEEEEECCCC-----hhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCC
Confidence            67888888999999999887     55544432211100         001111    2346888889999999999999


Q ss_pred             cccceeeccCCC-CCCCCCCceEEEEEeecCcccccccCceEEEEcc------CCeeEEEEeeecCc-----cc-cCCC-
Q 014154           86 DLRVAISNAGDS-GAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT------KGKASMRSIEVTKV-----SA-ESSC-  151 (430)
Q Consensus        86 ~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~v~~~~~~~~-----~~-~~~~-  151 (430)
                      +.+..+...... .......++.    .   .       +.++.+..      +|.+..++......     .. +... 
T Consensus       138 ~~~W~~~~~~~~~~~~~~~~P~v----~---~-------~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~  203 (668)
T 1kv9_A          138 KAIWSQQTTDPAKPYSITGAPRV----V---K-------GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPAL  203 (668)
T ss_dssp             CEEEEEECSCTTSSCBCCSCCEE----E---T-------TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTS
T ss_pred             CEeeeeccCCCCCcceecCCCEE----E---C-------CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCc
Confidence            988877652110 0000111111    0   0       23443332      24444444322111     00 0000 


Q ss_pred             ----cce----------EEeee-cCCCceEEEEEcCCCCEEEEEeCCC-------------------eEEEEECCCCeee
Q 014154          152 ----STV----------KSWNV-CASGTIAFSKVDISEKFSLFGGKGV-------------------EVNVWDLDKCEKI  197 (430)
Q Consensus       152 ----~~i----------~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~-------------------~i~~~d~~~~~~~  197 (430)
                          ..+          .+|.. ........++++|...+++.++.++                   .|..+|..+++.+
T Consensus       204 ~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~  283 (668)
T 1kv9_A          204 PYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA  283 (668)
T ss_dssp             CCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE
T ss_pred             cccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee
Confidence                000          01110 0011123468888888999888776                   3999999999999


Q ss_pred             EeeCCCCCCCCCCcCCcceeEEEEeecCCCC---EEEEEeCCCcEEEEECCCCCcceEEEeecC------------CC--
Q 014154          198 WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE------------TP--  260 (430)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------~~--  260 (430)
                      +.++..............+....+  ..++.   .++.++.+|.++++|..+++. +.......            .+  
T Consensus       284 W~~~~~~~~~wd~~~~~~~~~~d~--~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-l~~~~~~~~~w~~~~d~~~g~p~~  360 (668)
T 1kv9_A          284 WHYQVTPGDSWDFTATQQITLAEL--NIDGKPRKVLMQAPKNGFFYVLDRTNGKL-ISAEKFGKVTWAEKVDLATGRPVE  360 (668)
T ss_dssp             EEEESSTTCCSCCCCCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCCSEEEECTTTCCEEE
T ss_pred             eEeecCCCccccccCCCCcEEEEe--ccCCcEEEEEEEECCCCEEEEEECCCCCE-eccccccccccccccccccCCccc
Confidence            988653211111100111211122  12554   688899999999999998764 32222110            00  


Q ss_pred             ----------------------eEEEEecCCCCEEEEEe------------------------------------CCCcE
Q 014154          261 ----------------------IKAVAEEPDSFNIYIGN------------------------------------GSGDL  282 (430)
Q Consensus       261 ----------------------i~~~~~sp~~~~l~~~~------------------------------------~d~~i  282 (430)
                                            -..++++|+..++++..                                    .+|.|
T Consensus       361 ~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l  440 (668)
T 1kv9_A          361 APGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGAL  440 (668)
T ss_dssp             CTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEE
T ss_pred             cccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceE
Confidence                                  01267788777666521                                    23789


Q ss_pred             EEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEee
Q 014154          283 ASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLK  342 (430)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  342 (430)
                      ..||+.+++.+.++..+  .+.....+...+.+++.++.|+.|++||.++++.+..+.+.
T Consensus       441 ~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          441 LAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            99999999998887653  23333344456778999999999999999999999886543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=99.24  E-value=5.5e-09  Score=100.47  Aligned_cols=186  Identities=15%  Similarity=0.109  Sum_probs=118.1

Q ss_pred             EEEEcCCCCEEEEEeCC----------------CeEEEEECCCCeeeEeeCCCCCCCCCCc-CCcceeEEEEeecCCCC-
Q 014154          167 FSKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIF-TPTWFTSAAFLSIDDHR-  228 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-  228 (430)
                      .+++++....++.+..+                +.|..+|..+++.++.++.......... ...++. +..  ..+++ 
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~--~~~G~~  315 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQ--PVNGKM  315 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEE--EETTEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eec--ccCCcE
Confidence            35667777777776642                3699999999999998765321110000 001111 111  23563 


Q ss_pred             --EEEEEeCCCcEEEEECCCCCcceEEEeecC-------------CCe--------------------------EEEEec
Q 014154          229 --KFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TPI--------------------------KAVAEE  267 (430)
Q Consensus       229 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~s  267 (430)
                        .++.++.+|.++++|..+++. +..+....             .++                          ..++++
T Consensus       316 ~~~v~~~~~~G~l~~lD~~tG~~-~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~d  394 (571)
T 2ad6_A          316 TPLLSHIDRNGILYTLNRENGNL-IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYD  394 (571)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEE
T ss_pred             EEEEEEeCCCcEEEEEECCCCCE-EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceEC
Confidence              577788999999999998764 43333211             111                          245788


Q ss_pred             CCCCEEEEEe-------------------------------------CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154          268 PDSFNIYIGN-------------------------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (430)
Q Consensus       268 p~~~~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~  310 (430)
                      |+..+|++.+                                     .++.|..||+.+++.+.++...  ..+....+.
T Consensus       395 p~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~  472 (571)
T 2ad6_A          395 PESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLY  472 (571)
T ss_dssp             TTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEE
T ss_pred             CCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEE
Confidence            8877777764                                     2478999999999998887643  223322233


Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          311 PTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       311 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      ..+..++.++.||.|+.||.++|+.+..+.+.....  ...+.|..+|+.
T Consensus       473 t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~--~~p~~~~~~G~~  520 (571)
T 2ad6_A          473 TKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI--GSPMTYSFKGKQ  520 (571)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC--SCCEEEEETTEE
T ss_pred             ECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE--eeeEEEEECCEE
Confidence            345678889999999999999999999865433211  123445677876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.23  E-value=2e-12  Score=117.89  Aligned_cols=181  Identities=12%  Similarity=0.109  Sum_probs=104.4

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  252 (430)
                      ++..+++++.|+.|+.||..+++.++.+.. . .         +.+..+  ..++..+++++.|+.|+.||..+++. +.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-~---------~~s~p~--~~~g~~~v~~s~dg~l~a~d~~tG~~-~w   73 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-P---------VLQVPT--HVEEPAFLPDPNDGSLYTLGSKNNEG-LT   73 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-C---------SCCCC-------CCEEECTTTCCEEEC-----CC-SE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-C---------ceecce--EcCCCEEEEeCCCCEEEEEECCCCce-ee
Confidence            578899999999999999999999988765 1 1         222223  34666777778999999999988664 34


Q ss_pred             EEeecCC-CeE-EEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          253 SFDFRET-PIK-AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       253 ~~~~~~~-~i~-~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      .+..+.. .+. +..+. .+..|++++.++.|+.||.++|+.+..+..+ .    ...++|++..|++++.|+.|+.||.
T Consensus        74 ~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-~----~~~~~p~~~~v~~~~~dg~v~a~d~  147 (369)
T 2hz6_A           74 KLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-F----ADSLSPSTSLLYLGRTEYTITMYDT  147 (369)
T ss_dssp             ECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCS
T ss_pred             eeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC-C----cccccccCCEEEEEecCCEEEEEEC
Confidence            4433211 110 11111 3457788888999999999999998888765 2    2346678889999999999999999


Q ss_pred             CCCceeeEEEeeccccceEEeeecccc----ccccccCCCCceEecCCCCCc
Q 014154          331 KTRQLLSAVFLKQHLNEVVFDSAFADK----EVANAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~v~~~~~s~~----g~~~~~~~d~~i~~~~~~~~~  378 (430)
                      ++|+.+..+.....     ...+++++    +.+++++.++.+..|+.....
T Consensus       148 ~tG~~~W~~~~~~~-----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~  194 (369)
T 2hz6_A          148 KTRELRWNATYFDY-----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD  194 (369)
T ss_dssp             SSSSCCCEEEEEEE-----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred             CCCCEEEeEecccc-----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence            99998877543222     23444443    555777889999999986543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.22  E-value=2.2e-09  Score=106.37  Aligned_cols=178  Identities=12%  Similarity=0.096  Sum_probs=111.1

Q ss_pred             CeEEEEECCCCee--eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC----CCcEEEEECCCCCcceEEEeec
Q 014154          184 VEVNVWDLDKCEK--IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----DHQVRLYDTSAQRRPVMSFDFR  257 (430)
Q Consensus       184 ~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~  257 (430)
                      ..|++|++.++..  ...+.....      +..++..+.|  +|++++|+....    ...|+++|+.++......+..+
T Consensus       208 ~~v~~~~lgt~~~~~~~v~~~~~~------~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~  279 (693)
T 3iuj_A          208 HKVYFHRLGTAQEDDRLVFGAIPA------QHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD  279 (693)
T ss_dssp             CEEEEEETTSCGGGCEEEESCSGG------GCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred             cEEEEEECCCCcccceEEEecCCC------CCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence            3589999876542  112221100      0134677888  899998765442    2489999998764345666666


Q ss_pred             CCCeEEEEecCCCCEEEEEeC-C---CcEEEEEccCCeE--EeeeeCCCCCCeEEEEecCCCCeEEEEeCCC---cEEEE
Q 014154          258 ETPIKAVAEEPDSFNIYIGNG-S---GDLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDS---YLRFW  328 (430)
Q Consensus       258 ~~~i~~~~~sp~~~~l~~~~~-d---~~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg---~i~iw  328 (430)
                      ....... +++++..|+..+. +   +.|..+|+.++..  ...+..+ ...+.  .|++++.+|+....++   .|++|
T Consensus       280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE-RQQVL--TVHSGSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC-CSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred             CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC-CCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence            6666555 6666666655443 3   6799999987654  3455555 44444  8899998877665443   68999


Q ss_pred             ECCCCceeeEEEeeccccceEEeeeccccccc-cccC----CCCceEecCCCC
Q 014154          329 DIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA----DAPMLEIQNGND  376 (430)
Q Consensus       329 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~----~d~~i~~~~~~~  376 (430)
                      ++..+ ....+.+.+  ...+..+.+++++.. +...    ..+.+..|+...
T Consensus       356 d~~g~-~~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          356 DYEGK-RVREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             CTTSC-EEEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             ECCCC-eeEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence            98744 444432322  234678888888875 3322    237888888754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.22  E-value=4.7e-09  Score=103.37  Aligned_cols=286  Identities=12%  Similarity=0.074  Sum_probs=170.0

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCC--CCCce-EEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP--EDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~  142 (430)
                      ..|++++.++.|..+|..+|+.+..+..........  ....+ ....+..          +.++.++.++.+..++...
T Consensus        71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~v~v~~~dg~l~AlDa~T  140 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK----------GKVYVGVLDGRLEAIDAKT  140 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET----------TEEEEECTTSEEEEEETTT
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC----------CEEEEEccCCEEEEEECCC
Confidence            357788888999999999999888775421100000  00000 0011111          4777777788777766533


Q ss_pred             cCccccCCCcceEEeeecCC---CceEEEEEcC--CCCEEEEEe------CCCeEEEEECCCCeeeEeeCCCCCCCCCC-
Q 014154          143 TKVSAESSCSTVKSWNVCAS---GTIAFSKVDI--SEKFSLFGG------KGVEVNVWDLDKCEKIWTAKPPPKNSLGI-  210 (430)
Q Consensus       143 ~~~~~~~~~~~i~~~~~~~~---~~i~~~~~~~--~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-  210 (430)
                      ..          .+|.....   .....+..+|  .+..+++++      .++.|+.||..+|+.++.+.......... 
T Consensus       141 G~----------~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~  210 (689)
T 1yiq_A          141 GQ----------RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPP  210 (689)
T ss_dssp             CC----------EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred             CC----------EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccc
Confidence            22          13443221   0001111112  134455554      36899999999999998875321110000 


Q ss_pred             ---------------------cCCcceeEEEEeecCCCCEEEEEeCCCc-------------------EEEEECCCCCcc
Q 014154          211 ---------------------FTPTWFTSAAFLSIDDHRKFVAGTNDHQ-------------------VRLYDTSAQRRP  250 (430)
Q Consensus       211 ---------------------~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~  250 (430)
                                           ........+++  +|+..+++.++.++.                   |..||..+++. 
T Consensus       211 ~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~-  287 (689)
T 1yiq_A          211 EGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAY--DPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY-  287 (689)
T ss_dssp             CSHHHHHHHTTCCSSTHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE-
T ss_pred             ccccccccccccCCceeeecCCCCccccceeE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce-
Confidence                                 00001124667  777888998888764                   99999999875 


Q ss_pred             eEEEee--cC-------CCeEEEEecCCCC---EEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC---------------
Q 014154          251 VMSFDF--RE-------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS---------------  303 (430)
Q Consensus       251 ~~~~~~--~~-------~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------  303 (430)
                      +-.++.  |.       .+........+|+   .++.++.+|.++++|.++|+++..........               
T Consensus       288 ~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~  367 (689)
T 1yiq_A          288 VWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDE  367 (689)
T ss_dssp             EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECH
T ss_pred             eEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccch
Confidence            444443  21       1222222233564   78899999999999999999875433210000               


Q ss_pred             -----------------------eEEEEecCCCCeEEEEeC---------------------------------------
Q 014154          304 -----------------------IRSIARHPTLPIIASCGL---------------------------------------  321 (430)
Q Consensus       304 -----------------------v~~i~~~~~~~~l~s~~~---------------------------------------  321 (430)
                                             -..++|+|+..+|++...                                       
T Consensus       368 ~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~  447 (689)
T 1yiq_A          368 ENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLL  447 (689)
T ss_dssp             HHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHH
T ss_pred             hhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCC
Confidence                                   112678888777776532                                       


Q ss_pred             ------CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154          322 ------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       322 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                            +|.|+.||+.+++.+..+.....    .....+...+.+ ++++.|+.++.||....+
T Consensus       448 ~~~~~~~g~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~  507 (689)
T 1yiq_A          448 EMAKSWSGKLIAWDPVKQQAAWEVPYVTI----FNGGTLSTAGNLVFEGSADGRVIAYAADTGE  507 (689)
T ss_dssp             HHHTTCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCCCCcceeEEEEECCCCCeEeEccCCCC----ccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence                  37899999999999988543322    233345555555 778899999999987654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.22  E-value=6e-12  Score=114.70  Aligned_cols=203  Identities=11%  Similarity=0.015  Sum_probs=113.2

Q ss_pred             ceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCC
Q 014154          124 RTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       124 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      +.+++++.++.+..|+.....          .+|.... ..+.+..+..++..+++++.|+.|+.||..+++.++....+
T Consensus        10 ~~v~~gs~dg~v~a~d~~tG~----------~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~   78 (369)
T 2hz6_A           10 TLLFVSTLDGSLHAVSKRTGS----------IKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFT   78 (369)
T ss_dssp             TEEEEEETTSEEEEEETTTCC----------EEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCC
T ss_pred             CEEEEEcCCCEEEEEECCCCC----------EEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeecc
Confidence            578888889988888864332          2455544 45555555567777888889999999999999887766543


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEE
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA  283 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~  283 (430)
                      ..        ..+.+...  -..+..|++++.++.|+.||..+++. +..+..+.    ...++|++..+++++.++.|+
T Consensus        79 ~~--------~~~~~sp~--~~~~~~v~~g~~dg~v~a~D~~tG~~-~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~  143 (369)
T 2hz6_A           79 IP--------ELVQASPC--RSSDGILYMGKKQDIWYVIDLLTGEK-QQTLSSAF----ADSLSPSTSLLYLGRTEYTIT  143 (369)
T ss_dssp             HH--------HHHTTCSC--C-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEE
T ss_pred             Cc--------cccccCce--EecCCEEEEEeCCCEEEEEECCCCcE-EEEecCCC----cccccccCCEEEEEecCCEEE
Confidence            11        01100000  11345678888899999999998764 44554432    234567888999999999999


Q ss_pred             EEEccCCeEEeeeeCCCCCCeEEEEecCCC---CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTL---PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      .||.++++.+..+..+ .  .....+.++.   ..+++++.||.|+.||..+|+.+..+.+.   ...+....++++|
T Consensus       144 a~d~~tG~~~W~~~~~-~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~---~pv~~~~~~~~dg  215 (369)
T 2hz6_A          144 MYDTKTRELRWNATYF-D--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA---SPVVAFYVWQREG  215 (369)
T ss_dssp             CCCSSSSSCCCEEEEE-E--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS---SCEEEEEECTTSS
T ss_pred             EEECCCCCEEEeEecc-c--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC---CceEEEEEecCCc
Confidence            9999999987776532 1  2223344432   46778889999999999999998875432   2223334455555

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.20  E-value=6e-09  Score=88.78  Aligned_cols=207  Identities=12%  Similarity=-0.015  Sum_probs=141.9

Q ss_pred             eEEeeecCCCceEEEEEcCCCCEEEEEe-C--CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE
Q 014154          154 VKSWNVCASGTIAFSKVDISEKFSLFGG-K--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (430)
Q Consensus       154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (430)
                      +..+..........+.|++++ .|+.++ .  ++.|.++|+.+++.+..+.....        .....+++  . .+.+.
T Consensus        12 v~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~--------~fgeGi~~--~-g~~ly   79 (266)
T 2iwa_A           12 LNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDS--------YFGEGLTL--L-NEKLY   79 (266)
T ss_dssp             EEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEE
T ss_pred             EEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCC--------cceEEEEE--e-CCEEE
Confidence            334443333446899999986 555443 3  57999999999998887653221        12334555  2 23344


Q ss_pred             EEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeEE
Q 014154          231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRS  306 (430)
Q Consensus       231 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~  306 (430)
                      ++.-.++.+.++|..+.+ .+..+.....  ....+++|++.++++..++.|.++|..+.+.+..+....    -..++.
T Consensus        80 v~t~~~~~v~viD~~t~~-v~~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne  156 (266)
T 2iwa_A           80 QVVWLKNIGFIYDRRTLS-NIKNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE  156 (266)
T ss_dssp             EEETTCSEEEEEETTTTE-EEEEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEecCCEEEEEECCCCc-EEEEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence            444568899999999855 4666653311  123356788888888888999999999999888776420    124678


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc----------ccceEEeeeccccccc--cccCCCCceEecCC
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH----------LNEVVFDSAFADKEVA--NAAADAPMLEIQNG  374 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~  374 (430)
                      +.|. ++...+....++.|.+.|..+++.+..+.+.+-          .......++|+|+++.  +++...+.+.+.+.
T Consensus       157 le~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          157 LEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            8888 775555555678999999999999999766431          1135689999999875  77777888877766


Q ss_pred             CC
Q 014154          375 ND  376 (430)
Q Consensus       375 ~~  376 (430)
                      ..
T Consensus       236 ~~  237 (266)
T 2iwa_A          236 HL  237 (266)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.19  E-value=4.3e-09  Score=103.46  Aligned_cols=280  Identities=13%  Similarity=0.106  Sum_probs=173.7

Q ss_pred             eeEEeecCCeEEEecCCCCcccceeeccCCCCC-----C-CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGA-----Q-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~  140 (430)
                      .|++++.++.|..+|..+|+.+..+........     . .....   +.+..          +.++.++.++.+..++.
T Consensus        79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~a~~~----------~~v~v~~~dg~l~alD~  145 (677)
T 1kb0_A           79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRG---VALWK----------GKVYVGAWDGRLIALDA  145 (677)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCC---CEEET----------TEEEEECTTSEEEEEET
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCC---ceEEC----------CEEEEEcCCCEEEEEEC
Confidence            577777889999999999998877664211000     0 00011   11211          47777777887777765


Q ss_pred             eecCccccCCCcceEEeeecCC------CceEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEeeCCCCCCC
Q 014154          141 EVTKVSAESSCSTVKSWNVCAS------GTIAF-SKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNS  207 (430)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~~~~~------~~i~~-~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~  207 (430)
                      ....          .+|.....      ..+.. ..+  .+..+++++.      ++.|+.||..+++.++.+.......
T Consensus       146 ~tG~----------~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~  213 (677)
T 1kb0_A          146 ATGK----------EVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP  213 (677)
T ss_dssp             TTCC----------EEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred             CCCC----------EEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc
Confidence            4322          13443322      11111 111  2455666553      6899999999999998876543221


Q ss_pred             CCC-----------------------cCCcceeEEEEeecCCCCEEEEEeCCC-------------------cEEEEECC
Q 014154          208 LGI-----------------------FTPTWFTSAAFLSIDDHRKFVAGTNDH-------------------QVRLYDTS  245 (430)
Q Consensus       208 ~~~-----------------------~~~~~v~~~~~~~~~~~~~l~s~~~dg-------------------~i~iwd~~  245 (430)
                      ...                       ........+++  ++++.+|+.++.++                   .|..+|..
T Consensus       214 ~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~--d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~  291 (677)
T 1kb0_A          214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTF--DAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD  291 (677)
T ss_dssp             TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred             cccccccccccccccccccCceeEeCCCcccccceeE--cCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC
Confidence            000                       00011134567  77888888887664                   49999999


Q ss_pred             CCCcceEEEee--cC-------CCeEEEEecCCC---CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCC----------C
Q 014154          246 AQRRPVMSFDF--RE-------TPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG----------S  303 (430)
Q Consensus       246 ~~~~~~~~~~~--~~-------~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~  303 (430)
                      +++. +-.++.  |.       .....+....+|   ..++.++.+|.|+++|.++|+++..+......          +
T Consensus       292 TG~~-~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~  370 (677)
T 1kb0_A          292 TGKY-KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKP  370 (677)
T ss_dssp             TCCE-EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCE
T ss_pred             CCCE-EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCce
Confidence            9774 444443  21       112223334467   68899999999999999999998776532000          0


Q ss_pred             e------------------------EEEEecCCCCeEEEEeC--------------------------------------
Q 014154          304 I------------------------RSIARHPTLPIIASCGL--------------------------------------  321 (430)
Q Consensus       304 v------------------------~~i~~~~~~~~l~s~~~--------------------------------------  321 (430)
                      +                        ..++++|+..++++...                                      
T Consensus       371 ~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~  450 (677)
T 1kb0_A          371 IGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEP  450 (677)
T ss_dssp             EECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSC
T ss_pred             eeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccccccc
Confidence            1                        14678898888777543                                      


Q ss_pred             -----CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154          322 -----DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       322 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                           .|.|..||+.+++.+..+.....    ++...+..++.+ +.++.|+.+++||.....
T Consensus       451 ~~~~~~g~l~A~D~~tG~~~W~~~~~~~----~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~  509 (677)
T 1kb0_A          451 PKSKPFGRLLAWDPVAQKAAWSVEHVSP----WNGGTLTTAGNVVFQGTADGRLVAYHAATGE  509 (677)
T ss_dssp             CCSCCEEEEEEEETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CCCCCccEEEEEeCCCCcEEeecCCCCC----CcCcceEeCCCEEEEECCCCcEEEEECCCCc
Confidence                 27899999999999988643222    244455566655 778899999999986543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.18  E-value=9.6e-09  Score=90.57  Aligned_cols=217  Identities=11%  Similarity=0.022  Sum_probs=134.1

Q ss_pred             CC-CCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe
Q 014154           62 SQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (430)
Q Consensus        62 ~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~  140 (430)
                      +| ++.++++...++.|..||..++.. ..+..         ...+.++.+.+ .        +.++.+. ++.+.+++.
T Consensus        21 ~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~---------~~~~~~i~~~~-d--------G~l~v~~-~~~l~~~d~   80 (297)
T 3g4e_A           21 EEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTM---------DAPVSSVALRQ-S--------GGYVATI-GTKFCALNW   80 (297)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCE-EEEEC---------SSCEEEEEEBT-T--------SSEEEEE-TTEEEEEET
T ss_pred             ECCCCEEEEEECCCCEEEEEECCCCcE-EEEeC---------CCceEEEEECC-C--------CCEEEEE-CCeEEEEEC
Confidence            45 345666677789999999977654 22221         12455555432 2        3455554 455666654


Q ss_pred             eecCccccCCCcceEEeeec----CCCceEEEEEcCCCCEEEEEeCC---------CeEEEEECCC-CeeeEeeCCCCCC
Q 014154          141 EVTKVSAESSCSTVKSWNVC----ASGTIAFSKVDISEKFSLFGGKG---------VEVNVWDLDK-CEKIWTAKPPPKN  206 (430)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~-~~~~~~~~~~~~~  206 (430)
                      ..         +.+..+...    ....+..++++|+++++++....         ..-.+|.+.. +........    
T Consensus        81 ~~---------g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~----  147 (297)
T 3g4e_A           81 KE---------QSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ----  147 (297)
T ss_dssp             TT---------TEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE----
T ss_pred             CC---------CcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec----
Confidence            21         233322211    12357889999999976654221         2234444432 222211111    


Q ss_pred             CCCCcCCcceeEEEEeecCCCCEEE-EEeCCCcEEEEECC--CCCc----ceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154          207 SLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTS--AQRR----PVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       207 ~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~--~~~~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (430)
                            ....+.++|  +|+++.|+ +.+.++.|.+||+.  ++..    .+..+..+......++++++|++.++....
T Consensus       148 ------~~~pngi~~--spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~  219 (297)
T 3g4e_A          148 ------VDISNGLDW--SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG  219 (297)
T ss_dssp             ------ESBEEEEEE--CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT
T ss_pred             ------cccccceEE--cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC
Confidence                  134678899  89998664 45567889999874  3321    111222233567899999999887777778


Q ss_pred             CcEEEEEccCCeEEeeeeCCCCCCeEEEEec-CCCCeEEEEe
Q 014154          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCG  320 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~s~~  320 (430)
                      +.|..||..+++.+..+..+ ...+++++|. |+++.|+.++
T Consensus       220 ~~v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             TEEEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEE
T ss_pred             CEEEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEc
Confidence            88999999999998888876 6789999998 8887665554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=99.17  E-value=2.4e-08  Score=96.04  Aligned_cols=188  Identities=14%  Similarity=0.150  Sum_probs=117.6

Q ss_pred             EEEEcCCCCEEEEEeCC----------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC---
Q 014154          167 FSKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---  227 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---  227 (430)
                      .+++.+...+++.+..+                +.|..+|.++++.++.++................-+... ..++   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~-~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQK-DKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEE-CTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEecc-ccCCcEE
Confidence            35667778888887765                389999999999998876543221111000111111210 1456   


Q ss_pred             CEEEEEeCCCcEEEEECCCCCcceEEEeecC-------------CCe--------------------------EEEEecC
Q 014154          228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TPI--------------------------KAVAEEP  268 (430)
Q Consensus       228 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~i--------------------------~~~~~sp  268 (430)
                      ..++.++.+|.++++|..+++. +.......             .++                          ..++++|
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~-lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGAL-VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEECCCcEEEEEECCCCCE-eecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence            4677788999999999998764 43332110             111                          2456777


Q ss_pred             CCCEEEEEe---------------------------------------CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154          269 DSFNIYIGN---------------------------------------GSGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       269 ~~~~l~~~~---------------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  309 (430)
                      +..++++..                                       ..|.|..||+.+++.+.+....  .+...-.+
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~  480 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM  480 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence            766665531                                       3478999999999988777532  12221112


Q ss_pred             cCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          310 HPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       310 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      ...+.+++.++.|+.|+.||.++|+.+.++.+....  ...-+.|..+|+.
T Consensus       481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~--~~~P~~y~~~G~q  529 (599)
T 1w6s_A          481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA--IGYPMTYTHKGTQ  529 (599)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC--CSCCEEEEETTEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc--EeccEEEEeCCEE
Confidence            225667888999999999999999999987554321  1233556677764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.16  E-value=1e-08  Score=92.34  Aligned_cols=266  Identities=12%  Similarity=-0.030  Sum_probs=156.6

Q ss_pred             ceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEEecCCCCcccceeecc
Q 014154           25 LIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        25 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      +|.+.|..++     +++.++.....+    .+.+  +|||++|+++.          .++.|.+||+.+++.+.++...
T Consensus        47 ~vsvID~~t~-----~v~~~i~vG~~P----~i~~--spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~  115 (368)
T 1mda_H           47 ENWVSCAGCG-----VTLGHSLGAFLS----LAVA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELP  115 (368)
T ss_dssp             EEEEEETTTT-----EEEEEEEECTTC----EEEE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEET
T ss_pred             eEEEEECCCC-----eEEEEEeCCCCC----ceEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            7889999987     777776543333    2444  77888888876          4789999999999988887531


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc--CCeeEE--EEeeecCccccCCCcceEEeeecCCCceEEEEE
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT--KGKASM--RSIEVTKVSAESSCSTVKSWNVCASGTIAFSKV  170 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~v--~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~  170 (430)
                      ....+... .....+.+.+..        ..++.+..  +..+.+  ++...           ++.....  +.   ..+
T Consensus       116 ~~~~~~~g-~~P~~ia~SpDG--------k~lyVan~~~~~~v~V~~iD~~t-----------v~~i~v~--~~---~~~  170 (368)
T 1mda_H          116 DAPRFSVG-PRVHIIGNCASS--------ACLLFFLFGSSAAAGLSVPGASD-----------DQLTKSA--SC---FHI  170 (368)
T ss_dssp             TSCSCCBS-CCTTSEEECTTS--------SCEEEEECSSSCEEEEEETTTEE-----------EEEEECS--SC---CCC
T ss_pred             CccccccC-CCcceEEEcCCC--------CEEEEEccCCCCeEEEEEEchhh-----------ceEEECC--Cc---eEE
Confidence            00000000 011123333332        24444432  344555  44321           2222221  11   112


Q ss_pred             cCCC-CEEEEEeCCCeEEEEECCC-----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEEC
Q 014154          171 DISE-KFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (430)
Q Consensus       171 ~~~~-~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  244 (430)
                      .|++ ..+++.+.|+.+.+.|+++     ++......    ..... ...+.   .+   +++..++..+. +.|.+.|+
T Consensus       171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t----~~i~v-g~~P~---~~---~~~~~~~~vs~-~~V~viD~  238 (368)
T 1mda_H          171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT----GAQNC-SSQAA---QA---NYPGMLVWAVA-SSILQGDI  238 (368)
T ss_dssp             EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC----TTSCB-CSCCE---EE---TTTTEEEECBS-SCCEEEEC
T ss_pred             ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee----eeeeC-CCCcc---cc---ccCCEEEEEcC-CEEEEEEC
Confidence            3333 3445567788888889876     33222110    00000 00122   23   34555555566 99999999


Q ss_pred             CCCCc-ceEEEee-------c---CCCeEEEEecCCCCEEEEEeC---------CCcEEEEEccCCeEEeeeeCCCCCCe
Q 014154          245 SAQRR-PVMSFDF-------R---ETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLGCFIGKCSGSI  304 (430)
Q Consensus       245 ~~~~~-~~~~~~~-------~---~~~i~~~~~sp~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~v  304 (430)
                      ..... .+..+..       +   ......++++|+++.++++..         ++.+.++|+.+.+.+..+...  ...
T Consensus       239 ~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p  316 (368)
T 1mda_H          239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDS  316 (368)
T ss_dssp             CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEE
T ss_pred             CCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCc
Confidence            75321 1111111       0   011222689999998887643         235669999999999988864  368


Q ss_pred             EEEEecCCCC-eEEEEe-CCCcEEEEECCCCceeeEEE
Q 014154          305 RSIARHPTLP-IIASCG-LDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       305 ~~i~~~~~~~-~l~s~~-~dg~i~iwd~~~~~~~~~~~  340 (430)
                      ..+.|+|+++ ++++.. .++.|.++|+.+++.+.++.
T Consensus       317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             ceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            9999999997 456666 59999999999999998853

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.15  E-value=5.6e-08  Score=86.86  Aligned_cols=215  Identities=8%  Similarity=-0.083  Sum_probs=131.7

Q ss_pred             CCC-CceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEe
Q 014154           62 SQN-DPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSI  140 (430)
Q Consensus        62 ~p~-g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~  140 (430)
                      +|+ +.++++...++.|.+||..+++.. .+..         ...+.++.+.+.         +.++.++.+ .+.+++.
T Consensus        57 ~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~---------~~~v~~i~~~~d---------g~l~v~~~~-gl~~~d~  116 (326)
T 2ghs_A           57 DPASGTAWWFNILERELHELHLASGRKT-VHAL---------PFMGSALAKISD---------SKQLIASDD-GLFLRDT  116 (326)
T ss_dssp             ETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC---------SSCEEEEEEEET---------TEEEEEETT-EEEEEET
T ss_pred             eCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC---------CCcceEEEEeCC---------CeEEEEECC-CEEEEEC
Confidence            555 455666777899999998766532 2221         124555554332         344444443 3555553


Q ss_pred             eecCccccCCCcceEEee-ec---CCCceEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154          141 EVTKVSAESSCSTVKSWN-VC---ASGTIAFSKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (430)
Q Consensus       141 ~~~~~~~~~~~~~i~~~~-~~---~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~  210 (430)
                      ..         +.+..+. ..   ....+..++++|+++++++...      .+.|+.++  +++.......        
T Consensus       117 ~~---------g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--------  177 (326)
T 2ghs_A          117 AT---------GVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--------  177 (326)
T ss_dssp             TT---------CCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--------
T ss_pred             CC---------CcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--------
Confidence            21         2333222 11   1235789999999987665432      24566666  4443221111        


Q ss_pred             cCCcceeEEEEeecCCCCEEEEE-eCCCcEEEEECC--CC-Cc----ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcE
Q 014154          211 FTPTWFTSAAFLSIDDHRKFVAG-TNDHQVRLYDTS--AQ-RR----PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL  282 (430)
Q Consensus       211 ~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~--~~-~~----~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i  282 (430)
                        ......++|  +|+++.|+.+ +.++.|.+||+.  ++ ..    .+..+.........++++++|++.++...++.|
T Consensus       178 --~~~~~~i~~--s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v  253 (326)
T 2ghs_A          178 --ISIPNSICF--SPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV  253 (326)
T ss_dssp             --ESSEEEEEE--CTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE
T ss_pred             --CcccCCeEE--cCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE
Confidence              133578889  8999866554 457899999986  44 21    111222233457889999999877776677889


Q ss_pred             EEEEccCCeEEeeeeCCCCCCeEEEEec-CCCCeEEEEeC
Q 014154          283 ASVDIRTGKLLGCFIGKCSGSIRSIARH-PTLPIIASCGL  321 (430)
Q Consensus       283 ~iwd~~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~s~~~  321 (430)
                      .+||. +++.+..+..+ ...+++++|+ |++..|+.++.
T Consensus       254 ~~~d~-~g~~~~~i~~~-~~~~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          254 DRYDT-DGNHIARYEVP-GKQTTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEECT-TCCEEEEEECS-CSBEEEEEEESTTSCEEEEEEB
T ss_pred             EEECC-CCCEEEEEECC-CCCcEEEEEecCCCCEEEEEec
Confidence            99998 67777777765 5679999998 88876655543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.14  E-value=5.6e-09  Score=94.12  Aligned_cols=205  Identities=9%  Similarity=-0.019  Sum_probs=132.8

Q ss_pred             CCceEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEe-
Q 014154          162 SGTIAFSKVDISEKFSLFGGK-----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGT-  234 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~-  234 (430)
                      -..+..++++++++++++-..     +..|.+||+.+++.+..+......   ..+...+..+++  ++++ ..+++.. 
T Consensus        66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~---~~~~~~~~~v~v--d~~~g~~yvtd~~  140 (343)
T 2qe8_A           66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI---TLSNSFVNDLAV--DLIHNFVYISDPA  140 (343)
T ss_dssp             CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT---SCTTCCCCEEEE--ETTTTEEEEEECC
T ss_pred             eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh---cccccccceEEE--ecCCCEEEEEcCc
Confidence            357888999998876665433     578999999998876655432111   011245688899  6554 4445544 


Q ss_pred             --CCCcEEEEECCCCCcceEEEeec-----------------------------CCCeEEEEecCCCCEEEEEeCCC-cE
Q 014154          235 --NDHQVRLYDTSAQRRPVMSFDFR-----------------------------ETPIKAVAEEPDSFNIYIGNGSG-DL  282 (430)
Q Consensus       235 --~dg~i~iwd~~~~~~~~~~~~~~-----------------------------~~~i~~~~~sp~~~~l~~~~~d~-~i  282 (430)
                        .++.|.+||+.+++. ...+..|                             ...+..|+|+|+++.|+.+..++ .|
T Consensus       141 ~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l  219 (343)
T 2qe8_A          141 PDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM  219 (343)
T ss_dssp             SGGGCEEEEEETTTCCE-EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred             cCCCCeEEEEECCCCCE-EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence              578999999986542 3333221                             02358899999999998887766 55


Q ss_pred             EEEEcc---CCe-----EEe--eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEee
Q 014154          283 ASVDIR---TGK-----LLG--CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS  352 (430)
Q Consensus       283 ~iwd~~---~~~-----~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  352 (430)
                      ..++..   .+.     ...  ...++ ......++++++|.++++...++.|.+||..+++....  ..........++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~--~~~~~~~~p~~v  296 (343)
T 2qe8_A          220 YRIKSADLSNLQLTDAELGSKIERYSE-KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL--VTDEKLSWTDSF  296 (343)
T ss_dssp             EEEEHHHHTCTTCCHHHHHTTCEEEEE-CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEE--EECGGGSCEEEE
T ss_pred             EEEEHHHhcCCCCChhhhhcceEeccc-CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEE--EECCceecCCee
Confidence            555532   111     000  11122 33567799999999888888899999999856664332  222212346899


Q ss_pred             eccccccc-cccCCCCceEecCCC
Q 014154          353 AFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       353 ~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      +|.++|.+ ++.+..+.+.+|...
T Consensus       297 a~~~~g~l~v~~~~~~~~~~f~~~  320 (343)
T 2qe8_A          297 NFGSDGYLYFDCNQLHHSAPLNAG  320 (343)
T ss_dssp             EECTTSCEEEEECCGGGSGGGBTT
T ss_pred             EECCCCcEEEEeCccccccccccC
Confidence            99999987 776766777666643

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.13  E-value=7.2e-09  Score=91.77  Aligned_cols=192  Identities=8%  Similarity=-0.049  Sum_probs=126.8

Q ss_pred             CceEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          163 GTIAFSKVDISEK-FSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       163 ~~i~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      .......|+|+++ ++++...++.|..|+.. +.. ..+....         ..+..+++  +++++++++...++.|.+
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~---------~~~~gl~~--d~dG~l~v~~~~~~~v~~  111 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDAT---------AFTNGNAV--DAQQRLVHCEHGRRAITR  111 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEESC---------SCEEEEEE--CTTSCEEEEETTTTEEEE
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCC---------CccceeeE--CCCCCEEEEECCCCEEEE
Confidence            4566788999988 55666778899999984 432 2222111         45788899  889987766556688999


Q ss_pred             EECCCCCcceEEEeec-----CCCeEEEEecCCCCEEEE----EeC-------------CCcEEEEEccCCeEEeeeeCC
Q 014154          242 YDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYI----GNG-------------SGDLASVDIRTGKLLGCFIGK  299 (430)
Q Consensus       242 wd~~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~~~~  299 (430)
                      |+.. +.  +..+..+     ...+..++++|+|+++++    |..             .+.|..||..+++.....  .
T Consensus       112 ~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~  186 (305)
T 3dr2_A          112 SDAD-GQ--AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D  186 (305)
T ss_dssp             ECTT-SC--EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E
T ss_pred             ECCC-CC--EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c
Confidence            9986 33  2222211     134678999999988876    332             256888888777654333  2


Q ss_pred             CCCCeEEEEecCCCCeEEEEeCC------CcEEEEECCCCceeeE--EEeeccccceEEeeeccccccccccCCCCceEe
Q 014154          300 CSGSIRSIARHPTLPIIASCGLD------SYLRFWDIKTRQLLSA--VFLKQHLNEVVFDSAFADKEVANAAADAPMLEI  371 (430)
Q Consensus       300 ~~~~v~~i~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~  371 (430)
                       ......++|+|+++.|+.+...      +.|++|++..+. +..  ...... ......+++.++|.+.++..+ .|.+
T Consensus       187 -~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~-~~~pdgi~~d~~G~lwv~~~~-gv~~  262 (305)
T 3dr2_A          187 -LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVP-DGLPDGFCVDRGGWLWSSSGT-GVCV  262 (305)
T ss_dssp             -ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCS-SSCCCSEEECTTSCEEECCSS-EEEE
T ss_pred             -CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECC-CCCCCeEEECCCCCEEEecCC-cEEE
Confidence             4567899999999988777665      689999987654 221  111111 222457889999998444444 4888


Q ss_pred             cCCCC
Q 014154          372 QNGND  376 (430)
Q Consensus       372 ~~~~~  376 (430)
                      |+...
T Consensus       263 ~~~~g  267 (305)
T 3dr2_A          263 FDSDG  267 (305)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            88753

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.09  E-value=2.2e-08  Score=84.23  Aligned_cols=190  Identities=11%  Similarity=0.016  Sum_probs=130.4

Q ss_pred             ceEEeeecCCCceEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE
Q 014154          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF  230 (430)
Q Consensus       153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  230 (430)
                      .++.+......-...+.|+ ++.++.+.+.+|  .|+++|+.+++.+.++.....        ..-..+++    ++..|
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~--------~FgeGit~----~g~~l   99 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKR--------YFGEGISD----WKDKI   99 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTT--------CCEEEEEE----ETTEE
T ss_pred             EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCc--------cceeEEEE----eCCEE
Confidence            3444544444556889998 566666666665  899999999999887754320        11233555    34444


Q ss_pred             EEE-eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeE
Q 014154          231 VAG-TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIR  305 (430)
Q Consensus       231 ~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~  305 (430)
                      ... -.++.+.+||..+.+ .+.++....   ....+++++..|+.+..++.|.++|..+.+.+..+....    -..++
T Consensus       100 y~ltw~~~~v~v~D~~t~~-~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN  175 (262)
T 3nol_A          100 VGLTWKNGLGFVWNIRNLR-QVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN  175 (262)
T ss_dssp             EEEESSSSEEEEEETTTCC-EEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred             EEEEeeCCEEEEEECccCc-EEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence            444 468899999999866 466766532   223334678888887778899999999999888776421    13455


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc---------ccceEEeeeccccccc
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH---------LNEVVFDSAFADKEVA  360 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~g~~  360 (430)
                      .+.|. +|.+.+..-.++.|.+.|.++++.+..+.+.+-         .....+.+||+|++..
T Consensus       176 ELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~  238 (262)
T 3nol_A          176 ELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHR  238 (262)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTE
T ss_pred             eeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCE
Confidence            67786 676555555688999999999999999875421         1245689999998776

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=99.08  E-value=1.4e-07  Score=90.80  Aligned_cols=187  Identities=13%  Similarity=0.119  Sum_probs=118.0

Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CeEEEEECCCCeeeEeeCCCCCCCCCCcC-CcceeEEEE
Q 014154          167 FSKVDISEKFSLFGGK--------------------G----VEVNVWDLDKCEKIWTAKPPPKNSLGIFT-PTWFTSAAF  221 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~--------------------d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~  221 (430)
                      .++++|...+++++..                    |    +.|..+|..+++.++.++........... ...+. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4567777788887763                    2    58999999999999987653211111100 01111 111


Q ss_pred             eecCCC---CEEEEEeCCCcEEEEECCCCCcceEEEeecC-------------CC-------------------------
Q 014154          222 LSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------TP-------------------------  260 (430)
Q Consensus       222 ~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~~-------------------------  260 (430)
                       ...++   ..++.++.+|.++++|..+++. +..+....             .+                         
T Consensus       329 -~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~-lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P  406 (582)
T 1flg_A          329 -KAKDGKIVKATAHADRNGFFYVVDRSNGKL-QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSP  406 (582)
T ss_dssp             -ECSSSCEEEEEEEECTTSEEEEEETTTCCE-EEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESS
T ss_pred             -ecCCCCEEEEEEEECCCceEEEEECCCCCE-ecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECc
Confidence             01356   3788899999999999998764 43333221             00                         


Q ss_pred             -------eEEEEecCCCCEEEEEe---------------------------------CCCcEEEEEccCCeEEeeeeCCC
Q 014154          261 -------IKAVAEEPDSFNIYIGN---------------------------------GSGDLASVDIRTGKLLGCFIGKC  300 (430)
Q Consensus       261 -------i~~~~~sp~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~~~~  300 (430)
                             -..++++|+..++++..                                 .+|.|..||+.+++.+.+.... 
T Consensus       407 ~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-  485 (582)
T 1flg_A          407 PFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-  485 (582)
T ss_dssp             CTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-
T ss_pred             CCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-
Confidence                   01346677665665543                                 2578999999999998777643 


Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                       .++..-.....+.+++.++.||.|+.||.++|+.+.++.+.....  ..-+.|..+|+.
T Consensus       486 -~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~--a~P~~y~~~G~q  542 (582)
T 1flg_A          486 -LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIV--SPPITWEQDGEQ  542 (582)
T ss_dssp             -SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC--SCCEEEEETTEE
T ss_pred             -CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcc--cCceEEEECCEE
Confidence             222221122246678889999999999999999999875543211  123567778875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.05  E-value=1.3e-07  Score=88.97  Aligned_cols=245  Identities=12%  Similarity=0.044  Sum_probs=147.8

Q ss_pred             eeeee-cCCCCCceeEEeec-CCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEee-cCcccccccCceEEEEcc
Q 014154           55 LAASI-DDSQNDPLLAVARK-NGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFK-RQREESSSRSRTLLTCTT  131 (430)
Q Consensus        55 ~~~~~-~~~p~g~~l~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~  131 (430)
                      ..+++ ++.+||++|.+... ++.|.+.|+.+.+....+..       |....+.++.+.. ...       ++++++.+
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------p~g~~phg~~~~~~p~~-------~~v~~~~~  155 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------PNAKGIHGLRPQKWPRS-------NYVFCNGE  155 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------SSCCSEEEEEECCSSBC-------SEEEEEEC
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-------CCCCCCcceeeeecCCC-------cEEEEecc
Confidence            45555 67788998888654 56799999999887775432       1112444555533 222       35554431


Q ss_pred             ------------------CCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCC---------
Q 014154          132 ------------------KGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---------  184 (430)
Q Consensus       132 ------------------~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------  184 (430)
                                        ++.+.+.+.+.          .-.+|.+.-++....++++|+++++++.+.+.         
T Consensus       156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t----------~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~  225 (595)
T 1fwx_A          156 DETPLVNDGTNMEDVANYVNVFTAVDADK----------WEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEM  225 (595)
T ss_dssp             SCEESSCSSSSTTCGGGEEEEEEEEETTT----------TEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHH
T ss_pred             cccccCCCCcccccccccCceEEEEECCC----------CeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhc
Confidence                              12333333221          22244443334556678888999988887553         


Q ss_pred             -----------------------------eEEEEECCC--Cee-eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154          185 -----------------------------EVNVWDLDK--CEK-IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (430)
Q Consensus       185 -----------------------------~i~~~d~~~--~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  232 (430)
                                                   .|.+.|..+  +.. +..+.          ......++.+  +|||+++++
T Consensus       226 ~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip----------vg~~PhGv~~--sPDGk~v~V  293 (595)
T 1fwx_A          226 TAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP----------IANNPHGCNM--APDKKHLCV  293 (595)
T ss_dssp             TCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE----------EESSCCCEEE--CTTSSEEEE
T ss_pred             cccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe----------cCCCceEEEE--cCCCCEEEE
Confidence                                         244444443  222 11111          1134567888  899997776


Q ss_pred             Ee-CCCcEEEEECCCCC-----------cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC----------C
Q 014154          233 GT-NDHQVRLYDTSAQR-----------RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------G  290 (430)
Q Consensus       233 ~~-~dg~i~iwd~~~~~-----------~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~----------~  290 (430)
                      ++ .+.+|.++|+.+.+           ..+..... ......++|+|+|...++...|+.|.+||+.+          .
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~  372 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD  372 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence            65 57899999998532           11223322 34678899999994444566789999999987          5


Q ss_pred             eEEeeeeCCCCCCe-----EEEEecCCCCeEEEEe---CCCc----------EEEEECCCCceee
Q 014154          291 KLLGCFIGKCSGSI-----RSIARHPTLPIIASCG---LDSY----------LRFWDIKTRQLLS  337 (430)
Q Consensus       291 ~~~~~~~~~~~~~v-----~~i~~~~~~~~l~s~~---~dg~----------i~iwd~~~~~~~~  337 (430)
                      +.+.++..| ..+-     .++.++|||++|+++.   .|..          -.++|+..+++..
T Consensus       373 ~vi~kidV~-yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l  436 (595)
T 1fwx_A          373 PIKDKLDVH-YQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL  436 (595)
T ss_dssp             CEEEEEECS-SCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred             eeEEEeecc-cccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence            677777765 2221     2234589999998885   3443          1789997655443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.03  E-value=6.6e-09  Score=102.89  Aligned_cols=193  Identities=11%  Similarity=0.048  Sum_probs=125.2

Q ss_pred             ceEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-
Q 014154          164 TIAFSKVDISEKFSLFGG-----KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-  237 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-  237 (430)
                      .+..++|+|++++|+.+.     ....|++||+.+++.+..... .         .....++|  + |++.|+.++.+. 
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~---------~k~~~~~W--s-Dg~~l~y~~~~~~  196 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK-D---------VKFSGISW--L-GNEGFFYSSYDKP  196 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE-E---------EESCCCEE--E-TTTEEEEEESSCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC-C---------ceeccEEE--e-CCCEEEEEEecCc
Confidence            577889999999988543     235799999999876543110 0         11356788  8 999898888774 


Q ss_pred             ------------cEEEEECCCCCcc-eEEEe--e-cCCCeEEEEecCCCCEEEEEeC----CCcEEEEEccCCe-EEeee
Q 014154          238 ------------QVRLYDTSAQRRP-VMSFD--F-RETPIKAVAEEPDSFNIYIGNG----SGDLASVDIRTGK-LLGCF  296 (430)
Q Consensus       238 ------------~i~iwd~~~~~~~-~~~~~--~-~~~~i~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~  296 (430)
                                  .|++|++.+.... ...+.  . |.....++.|+|||++|+....    .+.|+++|+.++. ....+
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                        3999999875431 22332  2 3445788999999998865543    2589999998763 34455


Q ss_pred             eCCCCCCeEEEEecCCCCeEEEEe-CC---CcEEEEECCCCce--eeEEEeeccccceEEeeeccccccc-cccC-CCC-
Q 014154          297 IGKCSGSIRSIARHPTLPIIASCG-LD---SYLRFWDIKTRQL--LSAVFLKQHLNEVVFDSAFADKEVA-NAAA-DAP-  367 (430)
Q Consensus       297 ~~~~~~~v~~i~~~~~~~~l~s~~-~d---g~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~-~d~-  367 (430)
                      ..+ ....... |++++..|+..+ .+   +.|.++|+.++..  ...  +..+.... .  .|++++.. +... .++ 
T Consensus       277 ~~~-~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~-~--~~s~~g~~lv~~~~~~g~  349 (693)
T 3iuj_A          277 QGD-LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD--LIPERQQV-L--TVHSGSGYLFAEYMVDAT  349 (693)
T ss_dssp             ECS-SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE--EECCCSSC-E--EEEEETTEEEEEEEETTE
T ss_pred             eCC-CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE--EecCCCCE-E--EEEEECCEEEEEEEECCe
Confidence            554 4444444 666666554443 33   6799999987654  223  22333333 3  88999887 4443 343 


Q ss_pred             -ceEecCCCC
Q 014154          368 -MLEIQNGND  376 (430)
Q Consensus       368 -~i~~~~~~~  376 (430)
                       .|.+|+...
T Consensus       350 ~~l~~~d~~g  359 (693)
T 3iuj_A          350 ARVEQFDYEG  359 (693)
T ss_dssp             EEEEEECTTS
T ss_pred             eEEEEEECCC
Confidence             678887754

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.00  E-value=3.2e-07  Score=76.54  Aligned_cols=190  Identities=16%  Similarity=0.154  Sum_probs=130.0

Q ss_pred             eEEeeecCCCceEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKG--VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      ++.+......-...+.|++ +.+..+.+..  ..|+.+|+.+++.+........        ..-..+++  . ++.+.+
T Consensus        12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~--------~fgeGi~~--~-~~~ly~   79 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPP--------YFGAGIVA--W-RDRLIQ   79 (243)
T ss_dssp             EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTT--------CCEEEEEE--E-TTEEEE
T ss_pred             EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCC--------cceeEEEE--e-CCEEEE
Confidence            4444444456678899986 4455555554  4899999999999887754321        11234455  2 334444


Q ss_pred             EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeEEE
Q 014154          232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSI  307 (430)
Q Consensus       232 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~i  307 (430)
                      ..-.++.+.+||..+.+ .+.++...... ..+  .+++..|+.+..++.|.++|..+.+.+.++....    -..++.+
T Consensus        80 ltw~~~~v~v~D~~tl~-~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL  155 (243)
T 3mbr_X           80 LTWRNHEGFVYDLATLT-PRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL  155 (243)
T ss_dssp             EESSSSEEEEEETTTTE-EEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEeeCCEEEEEECCcCc-EEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence            45578899999999865 46677653322 344  4677788888889999999999999888776521    1345667


Q ss_pred             EecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec----------cccceEEeeeccccccc
Q 014154          308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ----------HLNEVVFDSAFADKEVA  360 (430)
Q Consensus       308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~g~~  360 (430)
                      .|. +|...+..-.+..|.+.|.++++.+..+.+.+          ....+.+.+||+|++..
T Consensus       156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~  217 (243)
T 3mbr_X          156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDR  217 (243)
T ss_dssp             EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTE
T ss_pred             EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCE
Confidence            775 66655555467899999999999999987553          12346789999998765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.99  E-value=3.5e-08  Score=88.91  Aligned_cols=205  Identities=11%  Similarity=0.004  Sum_probs=129.2

Q ss_pred             CceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-----
Q 014154          163 GTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-----  235 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----  235 (430)
                      .....++++++++.+++..  .++.++||.+.+++. ..+......  ...+...+..+++  +++++++++-..     
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~--~~~~~~~p~gv~~--d~~g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGN--AIITFDTVLGIKS--DGNGIVWMLDNGNQSKS   91 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSS--CCCCCSCEEEEEE--CSSSEEEEEECHHHHTS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccC--cccceeEeeEEEE--cCCCcEEEEcCCCCcCC
Confidence            5788999999999888764  234244554445543 333221100  1112357889999  788876665433     


Q ss_pred             CCcEEEEECCCCCcceEEEeec------CCCeEEEEecCCCCEEEEE-e---CCCcEEEEEccCCeEEeeeeCCC-----
Q 014154          236 DHQVRLYDTSAQRRPVMSFDFR------ETPIKAVAEEPDSFNIYIG-N---GSGDLASVDIRTGKLLGCFIGKC-----  300 (430)
Q Consensus       236 dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~~~sp~~~~l~~~-~---~d~~i~iwd~~~~~~~~~~~~~~-----  300 (430)
                      ++.|.+||+.+++ .+..+..+      ...+..++++|++..++.+ .   .++.|.+||+.+++....+.+|.     
T Consensus        92 ~~~i~~~d~~tg~-~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           92 VPKLVAWDTLNNQ-LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             CCEEEEEETTTTE-EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             CCeEEEEECCCCe-EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence            5789999998765 34555432      2346889999865555444 4   57889999998887765553320     


Q ss_pred             -----------------------CCCeEEEEecCCCCeEEEEeCCC-cEEEEECC---CC-----ceeeEEEeeccccce
Q 014154          301 -----------------------SGSIRSIARHPTLPIIASCGLDS-YLRFWDIK---TR-----QLLSAVFLKQHLNEV  348 (430)
Q Consensus       301 -----------------------~~~v~~i~~~~~~~~l~s~~~dg-~i~iwd~~---~~-----~~~~~~~~~~~~~~~  348 (430)
                                             ...+..|+|+|+++.|+.+..++ .|+.++..   .+     +....+...++.. .
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g-~  249 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP-I  249 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC-S
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC-C
Confidence                                   02368899999999888887666 45444432   11     1111111112212 2


Q ss_pred             EEeeeccccccc-cccCCCCceEecCC
Q 014154          349 VFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       349 v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      ...++++++|.+ ++...++.|.+|+.
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEEC
Confidence            367899999988 77778899999998

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.99  E-value=3.3e-07  Score=83.20  Aligned_cols=226  Identities=9%  Similarity=-0.003  Sum_probs=143.5

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEee---e--c-CCCceEEEEEcCCCCEEEEEeCC------CeEEEEECC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---V--C-ASGTIAFSKVDISEKFSLFGGKG------VEVNVWDLD  192 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~---~--~-~~~~i~~~~~~~~~~~l~~~~~d------~~i~~~d~~  192 (430)
                      .++.+..++.+.|+++...+.    .-..+++..   +  . ....-..+.+.|++ +++++..+      +.|.++|.+
T Consensus        98 l~v~~l~s~~I~viD~~t~p~----~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           98 LIVPGLRSSRIYIIDTKPNPR----EPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             EEEEBTTTCCEEEEECCSCTT----SCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             EEEccCCCCeEEEEECCCCCC----CceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            566777788899998764432    011233331   0  0 11245667888999 66665554      789999999


Q ss_pred             CCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-------------------CCCcEEEEECCCCCcceEE
Q 014154          193 KCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-------------------NDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-------------------~dg~i~iwd~~~~~~~~~~  253 (430)
                      +.+.+.++......      ...-..+.|  +|+++.+++..                   ...+|.+||+.++ +.+.+
T Consensus       173 T~~v~~~~~~~~~~------~~~~Yd~~~--~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~t  243 (462)
T 2ece_A          173 SFEPLGKWEIDRGD------QYLAYDFWW--NLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHS  243 (462)
T ss_dssp             TCCEEEECCSBCTT------CCCCCCEEE--ETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEE
T ss_pred             CCeEEEEEccCCCC------ccccceEEE--CCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeE
Confidence            99998887643211      011234566  88999888874                   3689999999985 44666


Q ss_pred             EeecC--CCeEEEEe--cCCCCEEEEEeC------CCcEEEEEccCCeE--Eeee--eCC---------C------CCCe
Q 014154          254 FDFRE--TPIKAVAE--EPDSFNIYIGNG------SGDLASVDIRTGKL--LGCF--IGK---------C------SGSI  304 (430)
Q Consensus       254 ~~~~~--~~i~~~~~--sp~~~~l~~~~~------d~~i~iwd~~~~~~--~~~~--~~~---------~------~~~v  304 (430)
                      +....  .....+.|  +|+++++++++.      +++|.+|....++.  ...+  ...         .      ....
T Consensus       244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p  323 (462)
T 2ece_A          244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV  323 (462)
T ss_dssp             EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred             EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence            66531  23445555  999999988874      56887766654432  1111  110         0      1346


Q ss_pred             EEEEecCCCCeEEEEeC-CCcEEEEECCC---CceeeEEEeeccc--------c---ceEEeeeccccccc-cccC
Q 014154          305 RSIARHPTLPIIASCGL-DSYLRFWDIKT---RQLLSAVFLKQHL--------N---EVVFDSAFADKEVA-NAAA  364 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~-dg~i~iwd~~~---~~~~~~~~~~~~~--------~---~~v~~~~~s~~g~~-~~~~  364 (430)
                      ..|.+|||+++|.++.. .+.|.+||+..   .+.+..+...|..        .   ..-..++++|||++ .++.
T Consensus       324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          324 TDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            88999999999877764 67999999863   3556665444321        0   01367899999998 4444

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.98  E-value=2.2e-08  Score=89.51  Aligned_cols=177  Identities=12%  Similarity=0.090  Sum_probs=123.7

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      +..|++++.++.|..+|.. ++..+......         ..+.++..  .+++. |..++.++.|..||.. +.. +..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~---------~~~~~~~~--~~~g~-l~vgt~~~~l~~~d~~-g~~-~~~  171 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKK---------AIYATPIV--SEDGT-IYVGSNDNYLYAINPD-GTE-KWR  171 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSS---------CCCSCCEE--CTTSC-EEEECTTSEEEEECTT-SCE-EEE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC---------ceeeeeEE--cCCCE-EEEEcCCCEEEEECCC-CCE-eEE
Confidence            5677788889999999998 77776655432         22444555  45555 6667888999999998 553 455


Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      +......+.++.+.+++.+ ++++  +.|..|| .+++.+..+... ...+.++...+++. |..++.++.|..+|. ++
T Consensus       172 ~~~~~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g~~~~~~~~~-~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g  244 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGTI-YFGS--DKVYAIN-PDGTEKWNFYAG-YWTVTRPAISEDGT-IYVTSLDGHLYAINP-DG  244 (330)
T ss_dssp             EECSSCCCSCCEECTTCCE-EEES--SSEEEEC-TTSCEEEEECCS-SCCCSCCEECTTSC-EEEEETTTEEEEECT-TS
T ss_pred             EecCCCceeeeEEcCCCEE-EEEe--CEEEEEC-CCCcEEEEEccC-CcceeceEECCCCe-EEEEcCCCeEEEECC-CC
Confidence            5555556777777777764 4454  7899999 788877777654 56788888888875 555667888988874 56


Q ss_pred             ceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          334 QLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      +.+..+..  . ...+..+.+.++|.+..++.++.|..++..
T Consensus       245 ~~~~~~~~--~-~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~  283 (330)
T 3hxj_A          245 TEKWRFKT--G-KRIESSPVIGNTDTIYFGSYDGHLYAINPD  283 (330)
T ss_dssp             CEEEEEEC--S-SCCCSCCEECTTSCEEEECTTCEEEEECTT
T ss_pred             CEeEEeeC--C-CCccccceEcCCCeEEEecCCCCEEEECCC
Confidence            66665432  2 223345666778888778888889998853

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.97  E-value=4.3e-08  Score=88.30  Aligned_cols=210  Identities=10%  Similarity=-0.049  Sum_probs=129.0

Q ss_pred             ceEEeeecCCCceEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEe
Q 014154          153 TVKSWNVCASGTIAFSKVDISEKFSLFGG----------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFL  222 (430)
Q Consensus       153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  222 (430)
                      .+..+..... +  .+.++|++++++++.          .++.|.+||+.+++.+.++.........  .......++| 
T Consensus        58 v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~--~g~~P~~ia~-  131 (368)
T 1mda_H           58 TLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS--VGPRVHIIGN-  131 (368)
T ss_dssp             EEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC--BSCCTTSEEE-
T ss_pred             EEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc--cCCCcceEEE-
Confidence            4445554432 3  799999999999886          3678999999999998887543100000  0022456788 


Q ss_pred             ecCCCCEEEEEeC--CCcEEE--EECCCCCcceEEEee---------c---------CCCeEEEEe--------------
Q 014154          223 SIDDHRKFVAGTN--DHQVRL--YDTSAQRRPVMSFDF---------R---------ETPIKAVAE--------------  266 (430)
Q Consensus       223 ~~~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~---------~---------~~~i~~~~~--------------  266 (430)
                       +||+++++++..  +..|.+  +|+.+    +..+..         +         .+.+..+..              
T Consensus       132 -SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~  206 (368)
T 1mda_H          132 -CASSACLLFFLFGSSAAAGLSVPGASD----DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             -CTTSSCEEEEECSSSCEEEEEETTTEE----EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             -cCCCCEEEEEccCCCCeEEEEEEchhh----ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence             899999998875  356888  88865    112211         0         000001111              


Q ss_pred             ------------cCCCCEEEEEeCCCcEEEEEccCC--eEEeeeeCC---------CCCCeEEEEecCCCCeEEEEeC--
Q 014154          267 ------------EPDSFNIYIGNGSGDLASVDIRTG--KLLGCFIGK---------CSGSIRSIARHPTLPIIASCGL--  321 (430)
Q Consensus       267 ------------sp~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~--  321 (430)
                                  ++++..++..+. +.|.+.|+...  +.+..+...         .......+.|+|++..++.+..  
T Consensus       207 t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~  285 (368)
T 1mda_H          207 TGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             CTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             eeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccc
Confidence                        223333333334 66777777543  222222110         0011122689999988876543  


Q ss_pred             -------CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cccC-CCCceEecCCCCCc
Q 014154          322 -------DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAA-DAPMLEIQNGNDTQ  378 (430)
Q Consensus       322 -------dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~-~d~~i~~~~~~~~~  378 (430)
                             ++.+.++|+.+++.+..+.+..    ....++|+|||+.  ++.. .++.|.++|.....
T Consensus       286 ~~~~~~~~~~~~ViD~~t~~vv~~i~vg~----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          286 SRSCLAAAENTSSVTASVGQTSGPISNGH----DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEEECCEEEE----EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             cCcccccCCCEEEEECCCCeEEEEEECCC----CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence                   2356699999999999875443    3588999999984  5555 58999999987754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.95  E-value=2.7e-07  Score=77.63  Aligned_cols=189  Identities=11%  Similarity=-0.004  Sum_probs=131.0

Q ss_pred             eEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (430)
Q Consensus       154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  233 (430)
                      ++.+......-...+.|+ ++.+..+.+.+|.|+++|+++++.+..+ ... .       ..-..+++  . .+.+.+..
T Consensus        46 v~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~-------~FgeGit~--~-g~~Ly~lt  112 (268)
T 3nok_A           46 IREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-N-------IFAEGLAS--D-GERLYQLT  112 (268)
T ss_dssp             EEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-T-------CCEEEEEE--C-SSCEEEEE
T ss_pred             EEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-C-------cceeEEEE--e-CCEEEEEE
Confidence            344444444556788887 4566667778889999999999988777 321 1       11234555  2 23444445


Q ss_pred             eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC----CCCeEEEEe
Q 014154          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC----SGSIRSIAR  309 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~----~~~v~~i~~  309 (430)
                      -.++.+.+||..+.+ .+.++..... -..++  ++++.|+.+..++.|.++|..+.+.+..+....    -..++.+.|
T Consensus       113 w~~~~v~V~D~~Tl~-~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~  188 (268)
T 3nok_A          113 WTEGLLFTWSGMPPQ-RERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC  188 (268)
T ss_dssp             SSSCEEEEEETTTTE-EEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             ccCCEEEEEECCcCc-EEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence            578899999999865 4666664322 23343  578888888889999999999999888776421    124567787


Q ss_pred             cCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc----------ccceEEeeeccccccc
Q 014154          310 HPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH----------LNEVVFDSAFADKEVA  360 (430)
Q Consensus       310 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~~v~~~~~s~~g~~  360 (430)
                      . +|.+.+..-.+..|.+.|.++++.+..+.+.+-          .....+.+||+|++..
T Consensus       189 ~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r  248 (268)
T 3nok_A          189 A-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR  248 (268)
T ss_dssp             E-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred             e-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence            6 776555554678999999999999999876421          2346789999998766

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.93  E-value=8.6e-06  Score=70.25  Aligned_cols=207  Identities=5%  Similarity=-0.094  Sum_probs=123.7

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPP  203 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~  203 (430)
                      .+++....+.+.++++...         .+..+-.........+++++++..|+.+ ...+.|.+++++...........
T Consensus        50 ly~~d~~~~~I~~~~~~g~---------~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~  120 (267)
T 1npe_A           50 VYWTDISEPSIGRASLHGG---------EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG  120 (267)
T ss_dssp             EEEEETTTTEEEEEESSSC---------CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS
T ss_pred             EEEEECCCCEEEEEecCCC---------CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC
Confidence            4445555667777665321         1122211222467899999976666555 45678999998643222111111


Q ss_pred             CCCCCCCcCCcceeEEEEeecCCCCEEEEEeC---CCcEEEEECCCCCcceEEEe-ecCCCeEEEEecCCCCEEEEEe-C
Q 014154          204 PKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---DHQVRLYDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGN-G  278 (430)
Q Consensus       204 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~-~  278 (430)
                               ......+++  +|++..|+.+..   .+.|..+++....  ...+. ........++++|++..|+.+. .
T Consensus       121 ---------~~~P~~i~v--d~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~~~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          121 ---------LVNPRGIVT--DPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             ---------CSSEEEEEE--ETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSCEEEEEEETTTTEEEEEETT
T ss_pred             ---------CCCccEEEE--eeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEECCCCCCcEEEEcCCCCEEEEEECC
Confidence                     134678888  776555555443   3688888887432  22222 2234578999999877666555 5


Q ss_pred             CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeecccc
Q 014154          279 SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADK  357 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~  357 (430)
                      .+.|.++|+........+..  ......++..  +..|+.+. ..+.|.++|..+++.+..+.. +. ......+++.|+
T Consensus       188 ~~~I~~~~~~g~~~~~~~~~--~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~-g~-~~~p~gi~~~~~  261 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLEG--LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP-HK-QTRLYGITIALS  261 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEEC--CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC-SS-CCCCCCEEEECS
T ss_pred             CCEEEEEecCCCceEEEecC--CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc-cc-ccccceeeecCc
Confidence            57899999975544333333  2344677664  44555444 568999999999998887532 22 112367777777


Q ss_pred             cc
Q 014154          358 EV  359 (430)
Q Consensus       358 g~  359 (430)
                      +.
T Consensus       262 ~~  263 (267)
T 1npe_A          262 QC  263 (267)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=7.5e-07  Score=80.87  Aligned_cols=197  Identities=10%  Similarity=0.058  Sum_probs=128.0

Q ss_pred             CCCCEEEE-EeCCCeEEEEECCCC----eeeEeeCCCCCC-CCCCcCCcceeEEEEeecCCCCEEEEEeCC------CcE
Q 014154          172 ISEKFSLF-GGKGVEVNVWDLDKC----EKIWTAKPPPKN-SLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQV  239 (430)
Q Consensus       172 ~~~~~l~~-~~~d~~i~~~d~~~~----~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i  239 (430)
                      ++.++|++ +..++.|+++|+.+.    +....+...... ..+   ......+..  .|++ +++++..+      +.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g---~s~Ph~~~~--~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSG---YSRLHTVHC--GPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHC---EEEEEEEEE--CSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccC---CCcccceeE--CCCe-EEEEcCCCcCCCCCCeE
Confidence            67777765 456788999999754    444444210000 000   012334455  7888 77776655      789


Q ss_pred             EEEECCCCCcceEEEeecCC---CeEEEEecCCCCEEEEEe-------------------CCCcEEEEEccCCeEEeeee
Q 014154          240 RLYDTSAQRRPVMSFDFRET---PIKAVAEEPDSFNIYIGN-------------------GSGDLASVDIRTGKLLGCFI  297 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~---~i~~~~~sp~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~  297 (430)
                      .++|..+.+ .+..+.....   --..+.|+|+++.+++..                   .+.+|.+||+.+++.+.++.
T Consensus       167 ~vlD~~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          167 LMLDHYSFE-PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             EEECTTTCC-EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCe-EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence            999999865 4666653222   234578899999888874                   36899999999998888887


Q ss_pred             CC-CCCCeEEEEe--cCCCCeEEEEe------CCCcEEEEECCCCcee--eEEEeecc---------------ccceEEe
Q 014154          298 GK-CSGSIRSIAR--HPTLPIIASCG------LDSYLRFWDIKTRQLL--SAVFLKQH---------------LNEVVFD  351 (430)
Q Consensus       298 ~~-~~~~v~~i~~--~~~~~~l~s~~------~dg~i~iwd~~~~~~~--~~~~~~~~---------------~~~~v~~  351 (430)
                      .. .......+.|  +|++++++.++      .+++|.+|....++..  ..+.+...               .......
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            52 1134455555  99999887776      5668888776654322  11111110               0133578


Q ss_pred             eeccccccc--cccCCCCceEecCCC
Q 014154          352 SAFADKEVA--NAAADAPMLEIQNGN  375 (430)
Q Consensus       352 ~~~s~~g~~--~~~~~d~~i~~~~~~  375 (430)
                      +.+|+||++  ++.-..+.|.+|+..
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEec
Confidence            999999998  666678899999985

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.92  E-value=3.7e-07  Score=89.64  Aligned_cols=286  Identities=12%  Similarity=0.074  Sum_probs=165.3

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCC--CCCce-EEEEEeecCcccccccCceEEEEccCCeeEEEEeee
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQP--EDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEV  142 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~  142 (430)
                      ..|++++.++.|..+|..+|+.+..+..........  ....+ ..+.++.          +.++.++.++.+..++...
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~v~~~dg~l~alD~~t  136 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG----------DKVYVGTLDGRLIALDAKT  136 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB----------TEEEEECTTSEEEEEETTT
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEEC----------CEEEEEcCCCEEEEEECCC
Confidence            357778888999999999999887765421100000  00000 0011111          4677777777766666432


Q ss_pred             cCccccCCCcceEEeeecCCCc--eEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCeeeEeeCCCCCCCCCC--
Q 014154          143 TKVSAESSCSTVKSWNVCASGT--IAFSKVDI--SEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNSLGI--  210 (430)
Q Consensus       143 ~~~~~~~~~~~i~~~~~~~~~~--i~~~~~~~--~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~--  210 (430)
                      ..          .+|.......  ...+...|  .+..++++..      ++.|+.+|..+++.++.+..........  
T Consensus       137 G~----------~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~  206 (668)
T 1kv9_A          137 GK----------AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYE  206 (668)
T ss_dssp             CC----------EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCS
T ss_pred             CC----------EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccc
Confidence            22          1344322100  00001111  2345555543      5899999999999999876421111000  


Q ss_pred             --------------------cCCcceeEEEEeecCCCCEEEEEeCCCc-------------------EEEEECCCCCcce
Q 014154          211 --------------------FTPTWFTSAAFLSIDDHRKFVAGTNDHQ-------------------VRLYDTSAQRRPV  251 (430)
Q Consensus       211 --------------------~~~~~v~~~~~~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~  251 (430)
                                          ........+++  .++..+++.++.++.                   |..+|..+++. +
T Consensus       207 ~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~--d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~-~  283 (668)
T 1kv9_A          207 HPELREAAKTWQGDQYWKLGGGGTVWDSMAY--DPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL-A  283 (668)
T ss_dssp             SHHHHHHHTTCCSSCHHHHCEECCCCSCEEE--ETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-E
T ss_pred             ccccccccccCCccceeeeCCCCccccceEE--cCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce-e
Confidence                                00011123566  677788888877763                   99999999774 4


Q ss_pred             EEEee--cC-------CCeEEEEecCCCC---EEEEEeCCCcEEEEEccCCeEEeeeeCCC-----------CCCe----
Q 014154          252 MSFDF--RE-------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKC-----------SGSI----  304 (430)
Q Consensus       252 ~~~~~--~~-------~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-----------~~~v----  304 (430)
                      -.++.  |.       .+.....+..+++   .++.++.+|.++++|..+|+.+..+....           ..++    
T Consensus       284 W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~  363 (668)
T 1kv9_A          284 WHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPG  363 (668)
T ss_dssp             EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTT
T ss_pred             eEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccccc
Confidence            44443  21       2233333334664   68899999999999999999885443210           0000    


Q ss_pred             --------------------EEEEecCCCCeEEEE------------------------------------eCCCcEEEE
Q 014154          305 --------------------RSIARHPTLPIIASC------------------------------------GLDSYLRFW  328 (430)
Q Consensus       305 --------------------~~i~~~~~~~~l~s~------------------------------------~~dg~i~iw  328 (430)
                                          ..++++|+..+++..                                    ..+|.|..|
T Consensus       364 ~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~  443 (668)
T 1kv9_A          364 VRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAW  443 (668)
T ss_dssp             TTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEE
T ss_pred             ccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEE
Confidence                                125677766655432                                    134789999


Q ss_pred             ECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCc
Q 014154          329 DIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       329 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~  378 (430)
                      |+.+++.+..+.....    .....+...+.+ ++++.|+.++.|+.....
T Consensus       444 D~~tG~~~W~~~~~~~----~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~  490 (668)
T 1kv9_A          444 DPVKQKAAWKVPYPTH----WNGGTLSTAGNLVFQGTAAGQMHAYSADKGE  490 (668)
T ss_dssp             ETTTTEEEEEEEESSS----CCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             eCCCCcEEEEccCCCC----CcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence            9999999887543222    122333344444 778899999999987543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.76  E-value=0.00021  Score=71.97  Aligned_cols=313  Identities=10%  Similarity=0.034  Sum_probs=178.1

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCC-----CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP-----HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      ...+..|..+ -|.+|+...+     ++.......     -..-.+.++..  .++|. |..|+.++-|.+|+..++...
T Consensus       273 ~g~lWigt~~-Gl~~~~~~~~-----~~~~~~~~~~~~~~l~~~~i~~i~~--D~~g~-lWigt~~~Gl~~~~~~~~~~~  343 (795)
T 4a2l_A          273 QNRLWIGTFN-DLNIYHEGTD-----SFASYSSNPVENGSLSQRSVRSIFM--DSQGG-MWLGTYFGGLNYYHPIRNRFK  343 (795)
T ss_dssp             TSCEEEEESS-CEEEEETTTT-----EEEEECCCTTSTTSCSSSCEEEEEE--CTTSC-EEEEESSSCEEEECGGGGSSE
T ss_pred             CCCEEEEeCC-hhheEcCCCC-----eEEEEecCCCCCCCCCCCcEEEEEE--eCCcC-EEEEECCCCeEEeCCCcccce
Confidence            3455666655 4778887764     332211111     01123555555  44555 667888788999987655422


Q ss_pred             ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec--------
Q 014154           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC--------  160 (430)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~--------  160 (430)
                       .+... +....-....+.++..  ...       +.+..++.++-+..++...         +.+..+...        
T Consensus       344 -~~~~~-~~~~~l~~~~V~~i~~--d~~-------g~lWiGt~~~Gl~~~~~~~---------~~~~~~~~~~~~~~~~l  403 (795)
T 4a2l_A          344 -NIRNI-PYKNSLSDNVVSCIVE--DKD-------KNLWIGTNDGGLNLYNPIT---------QRFTSYTLQEDESARGI  403 (795)
T ss_dssp             -EECCC-TTSSSCSCSSEEEEEE--CTT-------SCEEEEESSSCEEEECTTT---------CCEEEECCC------CC
T ss_pred             -EEcCC-CCCCCCCCCeeEEEEE--CCC-------CCEEEEECCCCeEEEcCCC---------CcEEEEecCCCCcccCC
Confidence             22110 0001112234544332  222       4677777776666665321         123333211        


Q ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154          161 ASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (430)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  240 (430)
                      ....|.++...++++.|.+|+.++-|.+||..+++... +......    .....|.++..  .+++.+.+ |+. +-|.
T Consensus       404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~~~~----l~~~~v~~i~~--d~~g~lwi-gt~-~Gl~  474 (795)
T 4a2l_A          404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQRNSQ----LVNENVYAILP--DGEGNLWL-GTL-SALV  474 (795)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTTTSC----CSCSCEEEEEE--CSSSCEEE-EES-SCEE
T ss_pred             CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecCCCC----cCCCeeEEEEE--CCCCCEEE-Eec-Ccee
Confidence            13568899998888856778887789999998765433 2211110    11256888887  66676554 455 4588


Q ss_pred             EEECCCCCcceEEEee-------cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee------CCCCCCeEEE
Q 014154          241 LYDTSAQRRPVMSFDF-------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI------GKCSGSIRSI  307 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~-------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~v~~i  307 (430)
                      +||..++.  ...+..       ....|.++...+++++.+ |+. +-|..||..+++.  .+.      +.....|.++
T Consensus       475 ~~~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i  548 (795)
T 4a2l_A          475 RFNPEQRS--FTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCI  548 (795)
T ss_dssp             EEETTTTE--EEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEE
T ss_pred             EEeCCCCe--EEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEE
Confidence            89987643  222221       235789999988886554 545 4588899887765  232      1114578999


Q ss_pred             EecCCCCeEEEEeCCCcEEEEECCCCceeeEEE-eeccccceEEeeeccccccccccCCCCceEecCC
Q 014154          308 ARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVF-LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       308 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      ...++|.+.++. .. -|..||..+++... +. ..+-....+.++...++|.+-.++.. -|..|+.
T Consensus       549 ~~d~~g~lWigT-~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t~~-Gl~~~~~  612 (795)
T 4a2l_A          549 YEASNGIIWVGT-RE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLSTNR-GISCFNP  612 (795)
T ss_dssp             EECTTSCEEEEE-SS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEETT-EEEEEET
T ss_pred             EECCCCCEEEEe-CC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEcCC-ceEEEcC
Confidence            998998765544 44 48889987765432 21 12222345788888888888333333 3444544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.75  E-value=0.00017  Score=72.60  Aligned_cols=319  Identities=9%  Similarity=0.031  Sum_probs=179.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCC------CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP------HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      ..+..|..++-+.+|+..++     ++. .+...      -....+.++..  .++|. |..|+.+ -|.+||..++...
T Consensus       226 g~lwigt~~~Gl~~~~~~~~-----~~~-~~~~~~~~~~~l~~~~i~~i~~--d~~g~-lWigt~~-Gl~~~~~~~~~~~  295 (795)
T 4a2l_A          226 TRIWVATEGAGLFLINPKTK-----EIK-NYLHSPSNPKSISSNYIRSLAM--DSQNR-LWIGTFN-DLNIYHEGTDSFA  295 (795)
T ss_dssp             TEEEEEEBSSCEEEEETTTT-----EEE-EECCCTTCTTSCSCSBEEEEEE--CTTSC-EEEEESS-CEEEEETTTTEEE
T ss_pred             CCEEEEECCCCeEEEeCCCC-----eEE-EeecCCCCccccCCCeEEEEEE--cCCCC-EEEEeCC-hhheEcCCCCeEE
Confidence            34555655545778887764     222 22211      01122445555  44555 5556655 5888987665532


Q ss_pred             ceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec------CC
Q 014154           89 VAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC------AS  162 (430)
Q Consensus        89 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~------~~  162 (430)
                      . +.........-....+.++..  ...       +.+..++.++-+..++....         .+..+...      ..
T Consensus       296 ~-~~~~~~~~~~l~~~~i~~i~~--D~~-------g~lWigt~~~Gl~~~~~~~~---------~~~~~~~~~~~~~l~~  356 (795)
T 4a2l_A          296 S-YSSNPVENGSLSQRSVRSIFM--DSQ-------GGMWLGTYFGGLNYYHPIRN---------RFKNIRNIPYKNSLSD  356 (795)
T ss_dssp             E-ECCCTTSTTSCSSSCEEEEEE--CTT-------SCEEEEESSSCEEEECGGGG---------SSEEECCCTTSSSCSC
T ss_pred             E-EecCCCCCCCCCCCcEEEEEE--eCC-------cCEEEEECCCCeEEeCCCcc---------cceEEcCCCCCCCCCC
Confidence            2 211000001112234544332  222       56777777666666653211         12222111      23


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ..|.++..++++++. .|+.++-|..|+..++....-.......... .....|.++..  .+++.+|..|+.++-|.+|
T Consensus       357 ~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-l~~~~v~~i~~--d~~g~~lWigt~~~Gl~~~  432 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARG-IGSNNIKAVYV--DEKKSLVYIGTHAGGLSIL  432 (795)
T ss_dssp             SSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------C-CSCSCEEEEEE--ETTTTEEEEEETTTEEEEE
T ss_pred             CeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccC-CCCccEEEEEE--cCCCCEEEEEeCcCceeEE
Confidence            568899988877655 4777778999998776543222111000000 01255888887  6777757778887889999


Q ss_pred             ECCCCCcceEEEe-----ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC-----CCCCCeEEEEecCC
Q 014154          243 DTSAQRRPVMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG-----KCSGSIRSIARHPT  312 (430)
Q Consensus       243 d~~~~~~~~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~v~~i~~~~~  312 (430)
                      |..+++  ...+.     .+...|.++...+++.+.+ |+.+ -|.+||..+++.......     .....|.++...++
T Consensus       433 d~~~~~--~~~~~~~~~~l~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~  508 (795)
T 4a2l_A          433 HRNSGQ--VENFNQRNSQLVNENVYAILPDGEGNLWL-GTLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSH  508 (795)
T ss_dssp             ETTTCC--EEEECTTTSCCSCSCEEEEEECSSSCEEE-EESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTT
T ss_pred             eCCCCc--EEEeecCCCCcCCCeeEEEEECCCCCEEE-EecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCC
Confidence            998754  33333     1345789999888876544 5554 488999888765432211     11357899999988


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeeEEEe----eccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          313 LPIIASCGLDSYLRFWDIKTRQLLSAVFL----KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      |.+.+.. .. -|..||..+++.  .+..    .+-....|.++...++|.+..++.. -|..|+..
T Consensus       509 g~lWigt-~~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~d~~  570 (795)
T 4a2l_A          509 KRLWIGG-EE-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCFNEK  570 (795)
T ss_dssp             CCEEEEE-SS-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEEETT
T ss_pred             CCEEEEe-CC-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeECCC
Confidence            8765544 44 488999877665  2211    1112345788999999998333333 46666653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.75  E-value=3.7e-06  Score=80.86  Aligned_cols=279  Identities=14%  Similarity=0.104  Sum_probs=160.7

Q ss_pred             eeEEeec-CCeEEEecC-CCCcccceeeccCCCCC------CCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEE
Q 014154           67 LLAVARK-NGLTDILNP-LNGDLRVAISNAGDSGA------QPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR  138 (430)
Q Consensus        67 ~l~~g~~-dg~i~iwd~-~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~  138 (430)
                      .|++++. ++.|..+|. .+|+.+..+..-.....      ......+   .+..          +.++.++.++.+..+
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~v~v~~~dg~l~al  130 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGL---AYGA----------GQIVKKQANGHLLAL  130 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCC---EEET----------TEEEEECTTSEEEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccccccccc---EEEC----------CEEEEEeCCCEEEEE
Confidence            4666666 889999999 89998877653111000      0000111   1111          467777777776666


Q ss_pred             EeeecCccccCCCcceEEeeecCCC-----ceEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEeeCCCCCC
Q 014154          139 SIEVTKVSAESSCSTVKSWNVCASG-----TIAF-SKVDISEKFSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKN  206 (430)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~~~~~~-----~i~~-~~~~~~~~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~  206 (430)
                      +.....         + +|......     .+.+ ..+  .+..+++++.      ++.|+.+|..+++.++++......
T Consensus       131 D~~tG~---------~-~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~  198 (571)
T 2ad6_A          131 DAKTGK---------I-NWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSD  198 (571)
T ss_dssp             ETTTCC---------E-EEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred             ECCCCC---------E-EEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCc
Confidence            643222         1 34432221     1111 011  2345666655      789999999999999887643211


Q ss_pred             ------CC-C-------------------C---cCCcceeEEEEeecCCCCEEEEEeCC----------------CcEEE
Q 014154          207 ------SL-G-------------------I---FTPTWFTSAAFLSIDDHRKFVAGTND----------------HQVRL  241 (430)
Q Consensus       207 ------~~-~-------------------~---~~~~~v~~~~~~~~~~~~~l~s~~~d----------------g~i~i  241 (430)
                            .. .                   .   ........+++  .++...++.++.+                +.|..
T Consensus       199 ~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~--d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~A  276 (571)
T 2ad6_A          199 DSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAY--DPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWG  276 (571)
T ss_dssp             HHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEE--ETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEE
T ss_pred             cccccCcccccccccccccccccccCcccceecCCCCeeeeEEE--cCCCCeEEEECCCCccccCCccCCCceeEEEEEE
Confidence                  00 0                   0   00000012455  4555666666532                35999


Q ss_pred             EECCCCCcceEEEee--cC--------CCeEEEEecCCCC---EEEEEeCCCcEEEEEccCCeEEeeeeCCCC-------
Q 014154          242 YDTSAQRRPVMSFDF--RE--------TPIKAVAEEPDSF---NIYIGNGSGDLASVDIRTGKLLGCFIGKCS-------  301 (430)
Q Consensus       242 wd~~~~~~~~~~~~~--~~--------~~i~~~~~sp~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------  301 (430)
                      +|..+++. +-.++.  |.        .++. +...++|+   .++.++.+|.++++|..+++.+..+.....       
T Consensus       277 ld~~tG~~-~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~  354 (571)
T 2ad6_A          277 RDLDTGMA-KWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKV  354 (571)
T ss_dssp             EETTTCCE-EEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred             EecCCCcE-EEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccc
Confidence            99999774 444432  11        1221 22234673   677888999999999999998877653210       


Q ss_pred             -----CCe--------------------------EEEEecCCCCeEEEEe------------------------------
Q 014154          302 -----GSI--------------------------RSIARHPTLPIIASCG------------------------------  320 (430)
Q Consensus       302 -----~~v--------------------------~~i~~~~~~~~l~s~~------------------------------  320 (430)
                           .++                          ..++++|+..+|+...                              
T Consensus       355 d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~  434 (571)
T 2ad6_A          355 DLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG  434 (571)
T ss_dssp             CTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred             cccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence                 111                          2356788777666553                              


Q ss_pred             -------CCCcEEEEECCCCceeeEEEeeccccceEEeeeccc-cccccccCCCCceEecCCCCCc
Q 014154          321 -------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-KEVANAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       321 -------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~~~~~~d~~i~~~~~~~~~  378 (430)
                             .+|.|..||+.+++.+.++.....    +....+.. ++.+++++.|+.|+.||.....
T Consensus       435 ~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~----~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~  496 (571)
T 2ad6_A          435 PNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA----AWGGTLYTKGGLVWYATLDGYLKALDNKDGK  496 (571)
T ss_dssp             TTSTTSCCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             ccccCCCCCCeEEEEECCCCCEEEEecCCCC----ccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence                   357899999999999888643322    12222232 4555668889999999987644

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.74  E-value=7.3e-06  Score=69.75  Aligned_cols=143  Identities=10%  Similarity=-0.049  Sum_probs=97.9

Q ss_pred             EEEE-EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          176 FSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       176 ~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      .|+. .-.++.+.++|..+.+.+.++......       .  ..+    ++++..++++..++.|.++|..+.+. +..+
T Consensus        77 ~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~-------g--~gl----t~Dg~~l~vs~gs~~l~viD~~t~~v-~~~I  142 (266)
T 2iwa_A           77 KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD-------G--WGL----ATDGKILYGSDGTSILYEIDPHTFKL-IKKH  142 (266)
T ss_dssp             EEEEEETTCSEEEEEETTTTEEEEEEECCSSS-------C--CEE----EECSSSEEEECSSSEEEEECTTTCCE-EEEE
T ss_pred             EEEEEEecCCEEEEEECCCCcEEEEEECCCCC-------e--EEE----EECCCEEEEECCCCeEEEEECCCCcE-EEEE
Confidence            4443 345778999999999888877543100       1  223    34777777777788999999998653 4544


Q ss_pred             eec-----CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC------------CCCCeEEEEecCCCCe-E
Q 014154          255 DFR-----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPI-I  316 (430)
Q Consensus       255 ~~~-----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~i~~~~~~~~-l  316 (430)
                      .-.     -..+..+.|. ++...+....++.|.+.|..+++.+..+...            .....+.|+|+|+++. +
T Consensus       143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lf  221 (266)
T 2iwa_A          143 NVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIF  221 (266)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEE
T ss_pred             EECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEE
Confidence            422     1246788888 6754444446789999999999998888642            0135689999999865 5


Q ss_pred             EEEeCCCcEEEEECCCC
Q 014154          317 ASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       317 ~s~~~dg~i~iwd~~~~  333 (430)
                      +++...+.|++.++...
T Consensus       222 VTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          222 VTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEETTCSEEEEEEEEEC
T ss_pred             EECCCCCeEEEEEEecc
Confidence            55557788888887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.69  E-value=1.1e-05  Score=67.86  Aligned_cols=124  Identities=12%  Similarity=0.096  Sum_probs=86.0

Q ss_pred             CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec--C-
Q 014154          182 KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--E-  258 (430)
Q Consensus       182 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~-  258 (430)
                      .++.+.+||..+.+.+.++.... .       .  ..+++    ++..|+.+..++.|.++|..+.+. +..+.-.  . 
T Consensus       105 ~~~~v~v~D~~t~~~~~ti~~~~-e-------G--~glt~----dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~  169 (262)
T 3nol_A          105 KNGLGFVWNIRNLRQVRSFNYDG-E-------G--WGLTH----NDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGE  169 (262)
T ss_dssp             SSSEEEEEETTTCCEEEEEECSS-C-------C--CCEEE----CSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTE
T ss_pred             eCCEEEEEECccCcEEEEEECCC-C-------c--eEEec----CCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCc
Confidence            47789999999999888876532 0       1  23333    566666666678899999998653 5554431  1 


Q ss_pred             --CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC-----------CCCCeEEEEecCCCCeEEEEeC
Q 014154          259 --TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-----------CSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       259 --~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                        ..++.+.|. +|+..+..-.++.|.+.|.++++.+..+...           .....+.|+|+|+++.|+..+.
T Consensus       170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             cccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence              334567776 6755544446889999999999998877642           0135689999999887777664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.65  E-value=2.1e-05  Score=69.91  Aligned_cols=200  Identities=10%  Similarity=-0.042  Sum_probs=121.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeC-------
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTN-------  235 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~-------  235 (430)
                      .+..++++++...|+++...+.|..+|..++............     .......+++  .+ ++.+.++-..       
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~-----~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~  153 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGV-----PFKWLYAVTV--DQRTGIVYFTDVSTLYDDRG  153 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTE-----ECSCEEEEEE--CTTTCCEEEEESCSSCCTTC
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCC-----cccccceEEE--ecCCCEEEEECCcccccccc
Confidence            5788999984445566655566888887755322111110000     0134677888  78 8877666432       


Q ss_pred             ----------CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-eCCCcEEEEEccCCe--EEeeeeCCCCC
Q 014154          236 ----------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGK--LLGCFIGKCSG  302 (430)
Q Consensus       236 ----------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~--~~~~~~~~~~~  302 (430)
                                ++.|..||..++.  +..+.........|+++|++++|+++ +..+.|.+|++....  ....+... .+
T Consensus       154 ~~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g  230 (322)
T 2fp8_A          154 VQQIMDTSDKTGRLIKYDPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN  230 (322)
T ss_dssp             HHHHHHHTCCCEEEEEEETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS
T ss_pred             cceehcccCCCceEEEEeCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC
Confidence                      3678889987644  22222222345679999999877666 456889999987421  11122112 33


Q ss_pred             CeEEEEecCCCCeEEEEeC----------CCcEEEEECCCCceeeEEEeecc-ccceEEeeeccccccc-cccCCCCceE
Q 014154          303 SIRSIARHPTLPIIASCGL----------DSYLRFWDIKTRQLLSAVFLKQH-LNEVVFDSAFADKEVA-NAAADAPMLE  370 (430)
Q Consensus       303 ~v~~i~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~-~~~~~d~~i~  370 (430)
                       ...+++.++|.+.++...          .+.|..+|. .++.+..+..... .-..+..+++ .++.+ ++....+.|.
T Consensus       231 -P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~  307 (322)
T 2fp8_A          231 -PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVG  307 (322)
T ss_dssp             -EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEE
T ss_pred             -CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceE
Confidence             788999999987666544          467888886 4777776543221 0122455555 46666 7777788899


Q ss_pred             ecCCCC
Q 014154          371 IQNGND  376 (430)
Q Consensus       371 ~~~~~~  376 (430)
                      .++...
T Consensus       308 ~~~~~~  313 (322)
T 2fp8_A          308 ILVYDK  313 (322)
T ss_dssp             EEEC--
T ss_pred             EEeccc
Confidence            988754

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.61  E-value=2.7e-05  Score=65.83  Aligned_cols=200  Identities=6%  Similarity=-0.000  Sum_probs=131.2

Q ss_pred             CceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      ..+..++++|+++.|+ +...++.|...|.. ++.+..+....        ......+++  .+++.++++.-.++.+.+
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g--------~~D~EGIa~--~~~g~~~vs~E~~~~l~~   95 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF--------VKDLETIEY--IGDNQFVISDERDYAIYV   95 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS--------CSSEEEEEE--CSTTEEEEEETTTTEEEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC--------CCChHHeEE--eCCCEEEEEECCCCcEEE
Confidence            5689999999776655 46678889999997 77776653311        034667788  677776666657788999


Q ss_pred             EECCCCCc--ceEEEee------cCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc---CCeEEeeeeC------CCCCCe
Q 014154          242 YDTSAQRR--PVMSFDF------RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR---TGKLLGCFIG------KCSGSI  304 (430)
Q Consensus       242 wd~~~~~~--~~~~~~~------~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~------~~~~~v  304 (430)
                      +++.....  .+.....      .......|+|+|.++.|+++.......+|.+.   ....+..+..      .....+
T Consensus        96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~  175 (255)
T 3qqz_A           96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV  175 (255)
T ss_dssp             EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred             EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence            98876442  1222221      23346899999999888887776655666554   1111121211      113457


Q ss_pred             EEEEecCCC-CeEEEEeCCCcEEEEECCCCceeeEEEeeccc-c-----ceEEeeeccccccccccCCCCceEecCC
Q 014154          305 RSIARHPTL-PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL-N-----EVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       305 ~~i~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~-----~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      .+++++|.. ++++.......|.++|.. |+.+..+.+.... .     ..--.++|.++|.+..++..+.++.|..
T Consensus       176 S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          176 SGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             eeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            899999965 455666677889999965 6677776665321 1     1247899999999855577777777754

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.61  E-value=1.8e-05  Score=76.19  Aligned_cols=286  Identities=12%  Similarity=0.100  Sum_probs=158.9

Q ss_pred             eeEEeec-CCeEEEecC-CCCcccceeeccCCCC-----CC-CCCCceEEEEEeecCcccccccCceEEEEccCCeeEEE
Q 014154           67 LLAVARK-NGLTDILNP-LNGDLRVAISNAGDSG-----AQ-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMR  138 (430)
Q Consensus        67 ~l~~g~~-dg~i~iwd~-~~~~~~~~~~~~~~~~-----~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~  138 (430)
                      .|++++. ++.|.-+|. .+|+.+..+..-....     .. .....   +.+++...    ....+++.++.++.+..+
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g---~av~p~~g----~~~~rV~v~t~dg~l~Al  136 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRG---LAYWPGDG----KTPALILKTQLDGNVAAL  136 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCC---CEEECCCS----SSCCEEEEECTTSEEEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccc---eEEEecCC----cceeEEEEEcCCCEEEEE
Confidence            4667776 889999999 8999887765421100     00 00011   22211111    000127777777766555


Q ss_pred             EeeecCccccCCCcceEEeeecCCC-----ceEE-EEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEeeCCCCCC
Q 014154          139 SIEVTKVSAESSCSTVKSWNVCASG-----TIAF-SKVDISEKFSLFGG------KGVEVNVWDLDKCEKIWTAKPPPKN  206 (430)
Q Consensus       139 ~~~~~~~~~~~~~~~i~~~~~~~~~-----~i~~-~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~  206 (430)
                      +....         .+ +|......     .+.+ ..+  .+..+++++      .++.|+.+|..+++.++.+......
T Consensus       137 Da~TG---------~~-~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~  204 (599)
T 1w6s_A          137 NAETG---------ET-VWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPD  204 (599)
T ss_dssp             ETTTC---------CE-EEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred             ECCCC---------CE-EEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCc
Confidence            54322         21 34432221     1111 011  134566555      3789999999999999887653211


Q ss_pred             CC-------CC-------------------c--CCcce-eEEEEeecCCCCEEEEEeCC----------------CcEEE
Q 014154          207 SL-------GI-------------------F--TPTWF-TSAAFLSIDDHRKFVAGTND----------------HQVRL  241 (430)
Q Consensus       207 ~~-------~~-------------------~--~~~~v-~~~~~~~~~~~~~l~s~~~d----------------g~i~i  241 (430)
                      ..       ..                   .  ....+ ..+++  .+...+++.++.+                +.|.-
T Consensus       205 ~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~--d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          205 KDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAY--DPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             HHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEE--ETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             cccccccccccccccccccccccccCCCcceecCCCccccceeE--eCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            00       00                   0  00000 12344  5566777777655                37999


Q ss_pred             EECCCCCcceEEEeecC----------CCeEEEEec-CCC---CEEEEEeCCCcEEEEEccCCeEEeeeeCCC-------
Q 014154          242 YDTSAQRRPVMSFDFRE----------TPIKAVAEE-PDS---FNIYIGNGSGDLASVDIRTGKLLGCFIGKC-------  300 (430)
Q Consensus       242 wd~~~~~~~~~~~~~~~----------~~i~~~~~s-p~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------  300 (430)
                      +|..+++. +-.++...          .++. +... .+|   ..++.++.+|.++++|.++|+.+.......       
T Consensus       283 ld~~TG~~-~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~  360 (599)
T 1w6s_A          283 RDADTGEA-KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360 (599)
T ss_dssp             EETTTCCE-EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EeCCCCce-eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence            99999774 44444321          1121 2222 467   567778899999999999999887665210       


Q ss_pred             -----CCCe--------------------------EEEEecCCCCeEEEE------------------------------
Q 014154          301 -----SGSI--------------------------RSIARHPTLPIIASC------------------------------  319 (430)
Q Consensus       301 -----~~~v--------------------------~~i~~~~~~~~l~s~------------------------------  319 (430)
                           ..++                          ..++++|+..++++.                              
T Consensus       361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (599)
T 1w6s_A          361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (599)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence                 0111                          134566665555442                              


Q ss_pred             ---e------CCCcEEEEECCCCceeeEEEeeccccceEEeeecc-ccccccccCCCCceEecCCCCCcc
Q 014154          320 ---G------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       320 ---~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~~~~~~d~~i~~~~~~~~~~  379 (430)
                         +      .+|.|..||+.+++.+........    ...-... ..+.++.++.|+.++.||......
T Consensus       441 ~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFA----VWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             CCcCCcccCCCcCeEEEEECCCCCEEeEecCCCC----ccCcceEecCCEEEEECCCCeEEEEECCCCCE
Confidence               1      357899999999999887543221    1111122 234446688899999999876543

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.59  E-value=7.3e-05  Score=64.33  Aligned_cols=195  Identities=9%  Similarity=-0.026  Sum_probs=120.9

Q ss_pred             CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEE
Q 014154          163 GTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVR  240 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~  240 (430)
                      ..+..+++++++..|+.+. .++.|..+++............         ......+++  .+++. ++++-...+.|.
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~p~~ia~--d~~~~~lyv~d~~~~~I~  104 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD---------LGSPEGIAL--DHLGRTIFWTDSQLDRIE  104 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT---------CCCEEEEEE--ETTTTEEEEEETTTTEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC---------CCCccEEEE--EecCCeEEEEECCCCEEE
Confidence            3567899999766666554 5678999998765433222211         134678888  67554 445555677899


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC---CCcEEEEEccCCeEEeeee-CCCCCCeEEEEecCCCCeE
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFI-GKCSGSIRSIARHPTLPII  316 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l  316 (430)
                      ++++..... .............++++|++..|+.+..   .+.|..+++.. .....+. .. ......++++|++..|
T Consensus       105 ~~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~~-~~~P~gia~d~~~~~l  181 (267)
T 1npe_A          105 VAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQDN-LGLPNGLTFDAFSSQL  181 (267)
T ss_dssp             EEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECTT-CSCEEEEEEETTTTEE
T ss_pred             EEEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEECC-CCCCcEEEEcCCCCEE
Confidence            999875332 2222222246789999997666666654   36888888753 3222332 22 3467899999987666


Q ss_pred             EEE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          317 ASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       317 ~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +.+ ...+.|.++|+........  ..+. .. ...++.. .+.+ ++....+.|..++...
T Consensus       182 yv~d~~~~~I~~~~~~g~~~~~~--~~~~-~~-P~gi~~d-~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          182 CWVDAGTHRAECLNPAQPGRRKV--LEGL-QY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             EEEETTTTEEEEEETTEEEEEEE--EECC-CS-EEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             EEEECCCCEEEEEecCCCceEEE--ecCC-CC-ceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence            555 4567899999975443332  2221 22 2455554 3444 6555678888888764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.58  E-value=2.8e-05  Score=74.89  Aligned_cols=284  Identities=14%  Similarity=0.123  Sum_probs=158.1

Q ss_pred             eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCce-EEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGI-VGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      .|++++.++.|..+|..+|+.+..+....+....+....+ ..+.++.          +.++.++.++.+..++..... 
T Consensus        70 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~----------~~v~~~t~dg~l~AlD~~TG~-  138 (582)
T 1flg_A           70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYG----------DKVFFGTLDASVVALNKNTGK-  138 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEET----------TEEEEEETTTEEEEEESSSCC-
T ss_pred             EEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEEC----------CEEEEEeCCCEEEEEECCCCC-
Confidence            3666666445999999999988877652221100000000 0011111          467777777766665543322 


Q ss_pred             cccCCCcceEEeeecCCC-----ceE---EEEEc-CCCC-EEEEEeC------CCeEEEEECCCCeeeEeeCCCCCCC--
Q 014154          146 SAESSCSTVKSWNVCASG-----TIA---FSKVD-ISEK-FSLFGGK------GVEVNVWDLDKCEKIWTAKPPPKNS--  207 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~~~-----~i~---~~~~~-~~~~-~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~--  207 (430)
                              + +|......     .+.   .+.-. .+++ .+++++.      ++.|+.+|..+++.++.........  
T Consensus       139 --------~-~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p  209 (582)
T 1flg_A          139 --------V-VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGR  209 (582)
T ss_dssp             --------E-EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEE
T ss_pred             --------E-EeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccccc
Confidence                    1 34332111     111   01101 1223 5666553      7899999999999998764321000  


Q ss_pred             -----------CC----------------C----cCCcceeEEEEeecCCCCEEEEEeC--------------------C
Q 014154          208 -----------LG----------------I----FTPTWFTSAAFLSIDDHRKFVAGTN--------------------D  236 (430)
Q Consensus       208 -----------~~----------------~----~~~~~v~~~~~~~~~~~~~l~s~~~--------------------d  236 (430)
                                 ..                .    ....+ ..+++  .|...+++.+..                    |
T Consensus       210 ~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w-~~~a~--d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d  286 (582)
T 1flg_A          210 LNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPW-QSASF--DAETNTIIVGAGNPGPWNTWARTAKGGNPHDYD  286 (582)
T ss_dssp             ETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCC-SCCEE--ETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCC
T ss_pred             ccCcccccccccccccCCCccccccccccccccCCcccc-CCceE--cCCCCEEEEeCCCCCcccCcccccCCCcccccC
Confidence                       00                0    00011 23455  566677776663                    2


Q ss_pred             ----CcEEEEECCCCCcceEEEee--cC--------CCeEEEEec-CCCC---EEEEEeCCCcEEEEEccCCeEEeeeeC
Q 014154          237 ----HQVRLYDTSAQRRPVMSFDF--RE--------TPIKAVAEE-PDSF---NIYIGNGSGDLASVDIRTGKLLGCFIG  298 (430)
Q Consensus       237 ----g~i~iwd~~~~~~~~~~~~~--~~--------~~i~~~~~s-p~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~  298 (430)
                          +.|.-+|..+++. +-.++.  |.        .++. +... .+|+   .++.++.+|.++++|.++|+.+..+..
T Consensus       287 ~~~~~~v~AlD~~TG~~-~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          287 SLYTSGQVGVDPSSGEV-KWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             CTTCSEEEEECTTTCCE-EEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             CcccceEEEEeCCCCCE-EEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence                5899999999875 444432  21        1221 1221 4663   788899999999999999998876654


Q ss_pred             CCC------------CCe--------------------------------EEEEecCCCCeEEEEe--------------
Q 014154          299 KCS------------GSI--------------------------------RSIARHPTLPIIASCG--------------  320 (430)
Q Consensus       299 ~~~------------~~v--------------------------------~~i~~~~~~~~l~s~~--------------  320 (430)
                      ...            .++                                ..++++|+..++++..              
T Consensus       365 ~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~  444 (582)
T 1flg_A          365 VDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSY  444 (582)
T ss_dssp             SSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCC
T ss_pred             ccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccc
Confidence            310            000                                1345666555554432              


Q ss_pred             -------------------CCCcEEEEECCCCceeeEEEeeccccceEEeeecc-ccccccccCCCCceEecCCCCCcc
Q 014154          321 -------------------LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       321 -------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~~~~~~d~~i~~~~~~~~~~  379 (430)
                                         .+|.|..||+.+++.+.+......    +..-... ..+.+++++.|+.++.||....+.
T Consensus       445 ~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~----~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~  519 (582)
T 1flg_A          445 TKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP----LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             CTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC----CCSCCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             cCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC----CcccceEeCCCEEEEECCCCcEEEEECCCCCE
Confidence                               368899999999999887543322    1111112 244557788999999999876543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.52  E-value=0.00022  Score=59.47  Aligned_cols=126  Identities=13%  Similarity=0.065  Sum_probs=86.7

Q ss_pred             EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeec--
Q 014154          180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR--  257 (430)
Q Consensus       180 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--  257 (430)
                      .-.++.+.+||..+.+.+.++.... .       .  ..++.    ++..|+.+..++.|.++|..+.+. +..+.-.  
T Consensus        81 tw~~~~v~v~D~~tl~~~~ti~~~~-~-------G--wglt~----dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~  145 (243)
T 3mbr_X           81 TWRNHEGFVYDLATLTPRARFRYPG-E-------G--WALTS----DDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAG  145 (243)
T ss_dssp             ESSSSEEEEEETTTTEEEEEEECSS-C-------C--CEEEE----CSSCEEEECSSSEEEEECTTTCCE-EEEEECEET
T ss_pred             EeeCCEEEEEECCcCcEEEEEeCCC-C-------c--eEEee----CCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccC
Confidence            3457789999999999988876532 0       2  23444    566666666788999999998653 5554432  


Q ss_pred             C---CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC------------CCCCeEEEEecCCCCeEEEEeC
Q 014154          258 E---TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       258 ~---~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------------~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                      .   ..++.+.+. +|+..+..-.+..|.+.|.++++.+..+...            .....+.|+++|++..|+..+.
T Consensus       146 g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          146 GRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            1   345666765 5654444446789999999999998877622            1235689999998877666653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.52  E-value=0.00082  Score=67.46  Aligned_cols=318  Identities=13%  Similarity=0.115  Sum_probs=171.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCC------CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDP------HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      ..+..|..+ -+.+||..++     ++. .+...      .....+.++..  .++|. |..|+..+-|.++|..++...
T Consensus       222 g~lwigt~~-Gl~~~d~~~~-----~~~-~~~~~~~~~~~l~~~~i~~i~~--d~~g~-lWigt~~~Gl~~~~~~~~~~~  291 (781)
T 3v9f_A          222 GNIWIGTSK-GLALFNANTE-----TFT-NFHNNPGNIHGALSSYIFSIKQ--LKDNK-LWIATELNGIMILDLQQNQFL  291 (781)
T ss_dssp             CCEEEEETT-EEEEEETTTT-----EEE-C-----------CCCCEEEEEE--CTTSE-EEEEESSSCEEEEETTCC---
T ss_pred             CCEEEEeCC-cHheECCCCC-----cEE-EEEcCCCccccccCceEEEEEE--CCCCC-EEEEeCCCCeEEECCCCCeee
Confidence            445556555 4777887664     222 22111      01122445554  44555 666766566888888665532


Q ss_pred             ceee----c--cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee---
Q 014154           89 VAIS----N--AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV---  159 (430)
Q Consensus        89 ~~~~----~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~---  159 (430)
                      ....    .  ............+.++.  ....       +.+-.++.++-+..++....         .+..+..   
T Consensus       292 ~~~~~~f~~~~~~~~~~~l~~~~v~~i~--~D~~-------g~lWigt~~~Gl~~~~~~~~---------~~~~~~~~~~  353 (781)
T 3v9f_A          292 LPEQIRFEFIREGDNNYSLSNASARYIF--QDSF-------NNIWIGTWGGGINFISNAPP---------TFHTWSYSPT  353 (781)
T ss_dssp             ------CEEECBCSSTTSBSSSCEEEEE--ECSS-------CCEEEEEBSSCEEEECSSCC---------SCEEEC----
T ss_pred             eeeccccccccCCCCCCCCCCCeEEEEE--EeCC-------CCEEEEecCCeEEEeCCCCC---------cceeeccCcc
Confidence            2111    0  00000111223444332  2222       46666776665655543211         2222211   


Q ss_pred             ------cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154          160 ------CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (430)
Q Consensus       160 ------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  233 (430)
                            -....|.++...+++.+. .|+.++-|..|+..++.... +....    . .....|.++..  .+++. |..|
T Consensus       354 ~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~-~~~~~----~-~~~~~v~~i~~--d~~g~-lWig  423 (781)
T 3v9f_A          354 QMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIY-NKENR----E-LLSNSVLCSLK--DSEGN-LWFG  423 (781)
T ss_dssp             CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEEC-C----------CCCSBEEEEEE--CTTSC-EEEE
T ss_pred             ccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEE-ccCCC----C-CCCcceEEEEE--CCCCC-EEEE
Confidence                  123568889888777654 57766679999986543321 11100    0 11256888877  56665 4557


Q ss_pred             eCCCcEEEEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC----CCCCeEE
Q 014154          234 TNDHQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRS  306 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~  306 (430)
                      +.++-|..+|..+++  ...+..   ....|.++...+++. |..|+. +-|..||..+++........    ....|.+
T Consensus       424 t~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          424 TYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS  499 (781)
T ss_dssp             ETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred             eccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence            777789999987643  333321   245789998888775 555666 45889998876543222111    1357899


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe-eccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      +...++|.+.+ |+.++-|..||..+++... +.. .+-....|.++...++|.+-.++..|.+..|+...
T Consensus       500 i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~  568 (781)
T 3v9f_A          500 IAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARN  568 (781)
T ss_dssp             EEECTTCCEEE-EESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTT
T ss_pred             EEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCC
Confidence            99988887554 4443348889887665432 211 11123457888888999884444466547777643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=0.0014  Score=65.81  Aligned_cols=319  Identities=10%  Similarity=0.002  Sum_probs=171.6

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeee-------ecC-CC-CCCcceeeeeecCCCCCceeEEeecCCeEEEecCCC
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVE-------RWG-DP-HSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLN   84 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~-------~~~-~~-~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~   84 (430)
                      ...+..|...+-|.+++...+.  ......       ... .. -..-.+.++..  .++|. |-.|+.++-|..++..+
T Consensus       268 ~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~--D~~g~-lWigt~~~Gl~~~~~~~  342 (781)
T 3v9f_A          268 DNKLWIATELNGIMILDLQQNQ--FLLPEQIRFEFIREGDNNYSLSNASARYIFQ--DSFNN-IWIGTWGGGINFISNAP  342 (781)
T ss_dssp             TSEEEEEESSSCEEEEETTCC-----------CEEECBCSSTTSBSSSCEEEEEE--CSSCC-EEEEEBSSCEEEECSSC
T ss_pred             CCCEEEEeCCCCeEEECCCCCe--eeeeeccccccccCCCCCCCCCCCeEEEEEE--eCCCC-EEEEecCCeEEEeCCCC
Confidence            3456666664557778877641  100000       000 00 01122455555  34554 67787778899998765


Q ss_pred             CcccceeeccCC--CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee---e
Q 014154           85 GDLRVAISNAGD--SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---V  159 (430)
Q Consensus        85 ~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~---~  159 (430)
                      +... .+.....  ....-....+.++..  ...       +.+..++.++-+..++....         .+..+.   .
T Consensus       343 ~~~~-~~~~~~~~~~~~~l~~~~v~~i~~--d~~-------g~lWigt~~~Gl~~~~~~~~---------~~~~~~~~~~  403 (781)
T 3v9f_A          343 PTFH-TWSYSPTQMNESSLSNKVVSSVCD--DGQ-------GKLWIGTDGGGINVFENGKR---------VAIYNKENRE  403 (781)
T ss_dssp             CSCE-EEC----CCCSSCCSSSCEEEEEE--CTT-------SCEEEEEBSSCEEEEETTEE---------EEECC-----
T ss_pred             Ccce-eeccCccccccCCCCCcceEEEEE--cCC-------CCEEEEeCCCcEEEEECCCC---------eEEEccCCCC
Confidence            5422 2211000  000111234544332  222       46667776665666653211         111111   1


Q ss_pred             cCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcE
Q 014154          160 CASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV  239 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  239 (430)
                      .....|.++...+++.+.+ |+.++-|..++..+++... +....      .....|.++..  .+++. |..|+. +-|
T Consensus       404 ~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~-~~~~~------~~~~~v~~i~~--d~~g~-lwigt~-~Gl  471 (781)
T 3v9f_A          404 LLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQI-IELEK------NELLDVRVFYE--DKNKK-IWIGTH-AGV  471 (781)
T ss_dssp             CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEE-CCSTT------TCCCCEEEEEE--CTTSE-EEEEET-TEE
T ss_pred             CCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEE-eccCC------CCCCeEEEEEE--CCCCC-EEEEEC-Cce
Confidence            1235688888887776554 7776779999987765432 22110      01256788877  56665 555566 568


Q ss_pred             EEEECCCCCcceEEEeec-----CCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC---CCCCCeEEEEecC
Q 014154          240 RLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG---KCSGSIRSIARHP  311 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~~~v~~i~~~~  311 (430)
                      ..||..++.. .......     ...|.++...++|.+. .|+.++-|..||..+++.. .+..   .....|.++...+
T Consensus       472 ~~~~~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~  548 (781)
T 3v9f_A          472 FVIDLASKKV-IHHYDTSNSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSS  548 (781)
T ss_dssp             EEEESSSSSC-CEEECTTTSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECT
T ss_pred             EEEeCCCCeE-EecccCcccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECC
Confidence            8999886442 2222111     3578999988888654 5555444788998776543 3321   1135789999988


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCceeeEEEe-eccccceEEeeeccccccccccCCCCceEecCC
Q 014154          312 TLPIIASCGLDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       312 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      +|.+.++ +.+|.|..||..+++... +.. .+-....+.++...++|.+-.++..| |..|+.
T Consensus       549 ~g~lWi~-T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~t~~G-l~~~~~  609 (781)
T 3v9f_A          549 KGQMWLA-TGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWASTNTG-ISCYIT  609 (781)
T ss_dssp             TSCEEEE-ETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEECSSC-EEEEET
T ss_pred             CCCEEEE-ECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEEcCCc-eEEEEC
Confidence            8875554 447755889987765432 211 12123346788888888884444444 444443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.43  E-value=2e-05  Score=78.65  Aligned_cols=195  Identities=13%  Similarity=0.065  Sum_probs=113.0

Q ss_pred             ceEEEEEc-CCCCEEEEEeC-CC----eEEEEECCCC-eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC
Q 014154          164 TIAFSKVD-ISEKFSLFGGK-GV----EVNVWDLDKC-EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND  236 (430)
Q Consensus       164 ~i~~~~~~-~~~~~l~~~~~-d~----~i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d  236 (430)
                      .+...+|+ |++++|+.+.. +|    .|+++|+.++ +.+.   ..      +  ......++|  +||++.|+....+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~~------~--~~~~~~~~W--spDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---DK------V--SGTNGEIVW--GPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---CC------E--EEECSCCEE--CSSTTEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---cc------c--cCceeeEEE--ecCCCEEEEEEEC
Confidence            56788999 99998886543 22    5999999987 5321   00      0  012346788  8999888777665


Q ss_pred             -----CcEEEEECCCCCcc-eEEEee-cCCCeEEEEecCCCCEEEEEeC---CCcEEEEEccCC--eE-EeeeeCCCCCC
Q 014154          237 -----HQVRLYDTSAQRRP-VMSFDF-RETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTG--KL-LGCFIGKCSGS  303 (430)
Q Consensus       237 -----g~i~iwd~~~~~~~-~~~~~~-~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~--~~-~~~~~~~~~~~  303 (430)
                           ..|+++++.++... ...+.. .......+.|+|||++|+..+.   ...|+++|+.++  +. +..+.......
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~  321 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV  321 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred             CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence                 36888888875421 233332 2234678899999999887663   346888999875  22 13333322455


Q ss_pred             eEEEEecCCCCeEEEEeCC----CcEEEEECCCCceeeE-EEeeccccceEEeeeccccccccccCCCCceEec
Q 014154          304 IRSIARHPTLPIIASCGLD----SYLRFWDIKTRQLLSA-VFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQ  372 (430)
Q Consensus       304 v~~i~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~  372 (430)
                      ...+.|+..+.+++....+    ..|..+++.++..... + +.......+..+.+..+.-+++...++..++|
T Consensus       322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~l-i~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVL-VDHSEDVFMESIAVRSNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             CEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEE-ECCCSSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred             eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeE-ECCCCCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence            5666665544444554443    3577777765321111 1 22222223455555432222555666654444

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.42  E-value=3.4e-05  Score=68.47  Aligned_cols=201  Identities=7%  Similarity=-0.085  Sum_probs=121.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EeeCCCCCC---------CCCCcCCcceeEEEEeecC-CCCEEEE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI-WTAKPPPKN---------SLGIFTPTWFTSAAFLSID-DHRKFVA  232 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~---------~~~~~~~~~v~~~~~~~~~-~~~~l~s  232 (430)
                      ...++++++++++++++..++.|..|+..++... +........         .........+..+++  .+ +++ |++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~--~~~~g~-l~v   96 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY--NLQNNQ-LYI   96 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE--ETTTTE-EEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEE--cCCCCc-EEE
Confidence            4567888999887888888999999998765432 111110000         000000124678888  66 554 555


Q ss_pred             EeCCCcEEEEECCCCCcceEEEee-----cCCCeEEEEecC-CCCEEEEEeC-----------------CCcEEEEEccC
Q 014154          233 GTNDHQVRLYDTSAQRRPVMSFDF-----RETPIKAVAEEP-DSFNIYIGNG-----------------SGDLASVDIRT  289 (430)
Q Consensus       233 ~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~i~~~~~sp-~~~~l~~~~~-----------------d~~i~iwd~~~  289 (430)
                      +...+.|..+|..++.  +..+..     .......+++.+ +|++.++-..                 ++.|..||..+
T Consensus        97 ~d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            5555568888877532  222211     113467899999 8876665432                 36788999877


Q ss_pred             CeEEeeeeCCCCCCeEEEEecCCCCeEEEE-eCCCcEEEEECCCCc--eeeEEEeeccccceEEeeeccccccc-cccCC
Q 014154          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASC-GLDSYLRFWDIKTRQ--LLSAVFLKQHLNEVVFDSAFADKEVA-NAAAD  365 (430)
Q Consensus       290 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~  365 (430)
                      ++.......  ......++|+|++.+|+.+ ...+.|.+|++....  ....+ .. . .. ...+++.++|.+ ++...
T Consensus       175 ~~~~~~~~~--~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~-~~-~-~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          175 KETTLLLKE--LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL-VK-I-PN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TEEEEEEEE--ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE-EE-C-SS-EEEEEECTTSCEEEEEEE
T ss_pred             CEEEEeccC--CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE-Ee-C-CC-CCCeEECCCCCEEEEecC
Confidence            765433322  2345789999999866555 556889999987532  11121 11 1 22 477899999988 44433


Q ss_pred             ----------CCceEecCCC
Q 014154          366 ----------APMLEIQNGN  375 (430)
Q Consensus       366 ----------d~~i~~~~~~  375 (430)
                                .+.|..++..
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTT
T ss_pred             cccccccCCCccEEEEECCC
Confidence                      3567777654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.40  E-value=0.00027  Score=59.45  Aligned_cols=170  Identities=14%  Similarity=0.027  Sum_probs=108.8

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP  204 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~  204 (430)
                      .+++.+.+|.+.++++....        .++.. +....--..+++.. +.+.+..-.++.+.+||..+.+.+.++....
T Consensus        67 Ly~stG~~g~v~~iD~~Tgk--------v~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~  136 (268)
T 3nok_A           67 FFESTGHQGTLRQLSLESAQ--------PVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSG  136 (268)
T ss_dssp             EEEEETTTTEEEECCSSCSS--------CSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSS
T ss_pred             EEEEcCCCCEEEEEECCCCc--------EEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCC
Confidence            66677777777766655332        22222 32221223355542 2333344468899999999999988876532


Q ss_pred             CCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEee--cC---CCeEEEEecCCCCEEEEEeCC
Q 014154          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF--RE---TPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~---~~i~~~~~sp~~~~l~~~~~d  279 (430)
                                .-..+++    ++..|+.+..++.|.++|..+.+. +..+.-  +.   ..++.+.|. +|...+..-.+
T Consensus       137 ----------eGwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s  200 (268)
T 3nok_A          137 ----------EGWGLCY----WNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGVIYANIWHS  200 (268)
T ss_dssp             ----------CCCCEEE----ETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred             ----------ceeEEec----CCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence                      1133444    677777777789999999998653 555443  21   245667776 67544444467


Q ss_pred             CcEEEEEccCCeEEeeeeCC------------CCCCeEEEEecCCCCeEEEEe
Q 014154          280 GDLASVDIRTGKLLGCFIGK------------CSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~------------~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      +.|.+.|.++++.+..+...            .....+.|+|+|+++.|+..+
T Consensus       201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            89999999999998877632            123568999999876665555

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.39  E-value=0.00026  Score=62.21  Aligned_cols=195  Identities=9%  Similarity=-0.055  Sum_probs=117.6

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC--cE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QV  239 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i  239 (430)
                      ......++++++++++++-..++.|..||.... ....+...          ..+..+++  .++++++++.....  .|
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~----------~~p~gia~--~~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVE----------GKVSGLAF--TSNGDLVATGWNADSIPV   97 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECS----------SEEEEEEE--CTTSCEEEEEECTTSCEE
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCC----------CCceeEEE--cCCCcEEEEeccCCcceE
Confidence            356778999999887776667889999998753 22222211          35788888  78888666554332  47


Q ss_pred             EEEECCCCCcceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE-Eeeee-------C-CCCCCeEEEEe
Q 014154          240 RLYDTSAQRRPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL-LGCFI-------G-KCSGSIRSIAR  309 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~-------~-~~~~~v~~i~~  309 (430)
                      ..+|..+++. ...... .......++..+++..+++-..++.|+++|..+++. +....       . ..-...+.+  
T Consensus        98 ~~~d~~~g~~-~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A           98 VSLVKSDGTV-ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             EEEECTTSCE-EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             EEEcCCCCeE-EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            7777776542 222221 122334555555554444444688999999876532 21110       0 001234556  


Q ss_pred             cCCCCeEEEE-eCCCcEEEEECCC-Cce--eeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          310 HPTLPIIASC-GLDSYLRFWDIKT-RQL--LSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       310 ~~~~~~l~s~-~~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +|++.+|+.+ ...+.|.+|++.. ++.  ...+ ...   .....++++++|.+ ++....+.|.+++...
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~-~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G  242 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  242 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EES---CCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEE-ecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCCC
Confidence            7888766554 5678899999874 332  1111 111   12367888999988 6666678899998653

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.33  E-value=0.0001  Score=72.40  Aligned_cols=190  Identities=11%  Similarity=-0.042  Sum_probs=101.0

Q ss_pred             EEEEEcCCCCEEEEEe-CC-----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---
Q 014154          166 AFSKVDISEKFSLFGG-KG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---  236 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~-~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---  236 (430)
                      .+++..+++++++.|+ .+     ..+.+||..+..-... ..........  ...  ...+  ..++..++.++.+   
T Consensus       290 ~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~--~~~--~~~~--~~~~~iyv~Gg~~g~~  362 (656)
T 1k3i_A          290 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLT--ADK--QGLY--RSDNHAWLFGWKKGSV  362 (656)
T ss_dssp             CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCC--CCT--TGGG--TTTCSCCEEECGGGCE
T ss_pred             cceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCcccccccc--ccc--ccee--ecCCceEEEECCCCcE
Confidence            3456667899999988 34     5699999987653221 1100000000  000  0011  2344444555444   


Q ss_pred             ------CcEEEEECCCCCcceEEEeecC---------CCeEEEEec-CCCCEEEEEeCCC-----------cEEEEEccC
Q 014154          237 ------HQVRLYDTSAQRRPVMSFDFRE---------TPIKAVAEE-PDSFNIYIGNGSG-----------DLASVDIRT  289 (430)
Q Consensus       237 ------g~i~iwd~~~~~~~~~~~~~~~---------~~i~~~~~s-p~~~~l~~~~~d~-----------~i~iwd~~~  289 (430)
                            ..+..||..+... ......+.         ..-.++.|. .++++++.|+.++           .|.+||..+
T Consensus       363 ~~~~~~~~v~~yd~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~  441 (656)
T 1k3i_A          363 FQAGPSTAMNWYYTSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT  441 (656)
T ss_dssp             EECCSSSEEEEEECSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTS
T ss_pred             EEecCccceeeeecCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCC
Confidence                  3567888876442 22222111         122444443 3677778877532           688889887


Q ss_pred             CeEEeee--eCCCCCC-eEEEEecCCCCeEEEEeCC-----------CcEEEEECCCCceeeEEEeeccccceEEeeecc
Q 014154          290 GKLLGCF--IGKCSGS-IRSIARHPTLPIIASCGLD-----------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA  355 (430)
Q Consensus       290 ~~~~~~~--~~~~~~~-v~~i~~~~~~~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s  355 (430)
                      .+-....  ... ... -.+++..|++++++.|+.+           ..+.+||..+.+-...-.+... ........+.
T Consensus       442 ~~W~~~~~~~mp-~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~-R~~hs~a~ll  519 (656)
T 1k3i_A          442 SPNTVFASNGLY-FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV-RVYHSISLLL  519 (656)
T ss_dssp             CCEEEECTTCCS-SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC-CCTTEEEEEC
T ss_pred             CCeeEEccCCCC-CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc-cccccHhhcC
Confidence            6654332  112 222 2345667899999999854           4689999987654321111111 1111234456


Q ss_pred             ccccc-cccCC
Q 014154          356 DKEVA-NAAAD  365 (430)
Q Consensus       356 ~~g~~-~~~~~  365 (430)
                      |+|++ ++|+.
T Consensus       520 ~dg~v~v~GG~  530 (656)
T 1k3i_A          520 PDGRVFNGGGG  530 (656)
T ss_dssp             TTSCEEEEECC
T ss_pred             CCcEEEecCCC
Confidence            89988 66664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.30  E-value=0.00018  Score=63.23  Aligned_cols=188  Identities=9%  Similarity=0.100  Sum_probs=120.0

Q ss_pred             CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee--cCCCC---EEEEEeC---CCcEEEEEC
Q 014154          173 SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS--IDDHR---KFVAGTN---DHQVRLYDT  244 (430)
Q Consensus       173 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~---~l~s~~~---dg~i~iwd~  244 (430)
                      ...+++.....+-+.+||+ +++.+..+..           ..++.+...+  .-.+.   ++++...   +++|.+|++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-----------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i  106 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-----------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC-----------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC-----------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence            4456666667788999999 8888887754           2245544421  00222   2233333   578999977


Q ss_pred             CCCCcceEEEee------cC-CCeEEEEe--cCC-CC-EEEEEeCCCcEEEEEcc-------CCeEEeeeeCCCCCCeEE
Q 014154          245 SAQRRPVMSFDF------RE-TPIKAVAE--EPD-SF-NIYIGNGSGDLASVDIR-------TGKLLGCFIGKCSGSIRS  306 (430)
Q Consensus       245 ~~~~~~~~~~~~------~~-~~i~~~~~--sp~-~~-~l~~~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~v~~  306 (430)
                      .....++..+..      .. ..+..+++  +|. +. ++++...+|.+..|++.       +.+.+++|..  .+.+..
T Consensus       107 Dp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--gsq~Eg  184 (355)
T 3amr_A          107 DGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--NSQTEG  184 (355)
T ss_dssp             CTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--SSCEEE
T ss_pred             CCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--CCCcce
Confidence            422223444421      11 45666777  774 43 68888899999999883       4466778876  467889


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECC-----CCceeeEEEeeccccceEEeeec--ccccc-c--cccCCCCceEecCCC
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIK-----TRQLLSAVFLKQHLNEVVFDSAF--ADKEV-A--NAAADAPMLEIQNGN  375 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~v~~~~~--s~~g~-~--~~~~~d~~i~~~~~~  375 (430)
                      +...+....|+.+-+|.-|..++.+     +++.+..+. .++...-+..|+.  .++++ +  ++.-.++.+.+|+..
T Consensus       185 cvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          185 MAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            9999988899999998777777754     344554421 2333333566666  56666 4  333357789999886

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.25  E-value=0.0025  Score=57.90  Aligned_cols=233  Identities=8%  Similarity=-0.038  Sum_probs=129.4

Q ss_pred             eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  146 (430)
                      +|+.+. ...|+..++........+..         .....++.+-....       ..+++-...+.+..+++...   
T Consensus        89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~---------~~~~~gl~~d~~~~-------~ly~~D~~~~~I~r~~~~g~---  148 (386)
T 3v65_B           89 VLLFAN-RIDIRQVLPHRSEYTLLLNN---------LENAIALDFHHRRE-------LVFWSDVTLDRILRANLNGS---  148 (386)
T ss_dssp             EEEEEC-BSCEEEECTTSCCCEEEECS---------CSCEEEEEEETTTT-------EEEEEETTTTEEEEEETTSC---
T ss_pred             eeEeec-CccceeeccCCCcEEEEecC---------CCccEEEEEecCCC-------eEEEEeCCCCcEEEEecCCC---
Confidence            444443 36688888765443322221         12444455443332       23344445555555543211   


Q ss_pred             ccCCCcceEEeeecCCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                            .+..+-.........+++++.+..|+. -...+.|.+++++.......+...         ......+++  .|
T Consensus       149 ------~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~---------l~~P~giav--dp  211 (386)
T 3v65_B          149 ------NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS---------LEKPRAIAL--HP  211 (386)
T ss_dssp             ------CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS---------CSCEEEEEE--ET
T ss_pred             ------CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC---------CCCCcEEEE--Ec
Confidence                  122221122234567888875555544 445678888888644322222211         144678888  66


Q ss_pred             CCCEEEEEe-CC-CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCC
Q 014154          226 DHRKFVAGT-ND-HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG  302 (430)
Q Consensus       226 ~~~~l~s~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  302 (430)
                      .+..|+.+. .. +.|..+++..... .......-.....|+++|++..|+.+. ..+.|..+|+........+... ..
T Consensus       212 ~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~  289 (386)
T 3v65_B          212 MEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LP  289 (386)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CS
T ss_pred             CCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CC
Confidence            555554443 44 6788888875332 222222334578999998776666654 4578999998643332233322 34


Q ss_pred             CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154          303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      ....|++ ..+.++++-...+.|..++..+|+.+..+
T Consensus       290 ~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          290 HPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             SEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            5678888 34445556667788999997778777764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.25  E-value=0.0015  Score=55.11  Aligned_cols=171  Identities=10%  Similarity=0.054  Sum_probs=102.9

Q ss_pred             ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---EeeCCCCCCCCCCcCCcceeEEEEeecCCCCE
Q 014154          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI---WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK  229 (430)
Q Consensus       153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  229 (430)
                      .++.+.+........+++.+++.++++.-.++.+.++++.....+   .......   ...........++|  +|.++.
T Consensus        60 v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~---~~~~~N~g~EGLA~--d~~~~~  134 (255)
T 3qqz_A           60 LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPL---QESPTNCGFEGLAY--SRQDHT  134 (255)
T ss_dssp             EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCC---SSCCCSSCCEEEEE--ETTTTE
T ss_pred             EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecccc---ccccccCCcceEEE--eCCCCE
Confidence            444444443457788999888877676656788999988654321   2221100   01112244789999  788877


Q ss_pred             EEEEeCCCcEEEEECCC--CCcceEEEee-------cCCCeEEEEecCCCC-EEEEEeCCCcEEEEEccCCeEEeeeeCC
Q 014154          230 FVAGTNDHQVRLYDTSA--QRRPVMSFDF-------RETPIKAVAEEPDSF-NIYIGNGSGDLASVDIRTGKLLGCFIGK  299 (430)
Q Consensus       230 l~s~~~dg~i~iwd~~~--~~~~~~~~~~-------~~~~i~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~  299 (430)
                      |+++.......+|.+..  ....+..+..       +...+.+++++|... +++.+.....|.++|.. ++.+..+.-.
T Consensus       135 L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~  213 (255)
T 3qqz_A          135 FWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLT  213 (255)
T ss_dssp             EEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECS
T ss_pred             EEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcC
Confidence            77776655555555431  1111222211       223578999999654 55555667888899974 6665555432


Q ss_pred             C--------CCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          300 C--------SGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       300 ~--------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      .        -.....|+|.++|++. ..++-+.+++|.-
T Consensus       214 ~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~~  251 (255)
T 3qqz_A          214 KGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFTP  251 (255)
T ss_dssp             TTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEEC
T ss_pred             CccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEEe
Confidence            0        1266899999999744 4477777777754

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.24  E-value=0.00035  Score=64.61  Aligned_cols=198  Identities=15%  Similarity=0.036  Sum_probs=117.2

Q ss_pred             ceEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---C-
Q 014154          164 TIAFSKVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---H-  237 (430)
Q Consensus       164 ~i~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g-  237 (430)
                      ....++++|+  ...|+.+...+.|+.+|+.++........          ......+++  +++++++++....   . 
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~----------~~~P~giav--d~dG~lyVad~~~~~~~~  207 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN----------IGQCADVNF--TLNGDMVVVDDQSSDTNT  207 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC----------CSCEEEEEE--CTTCCEEEEECCSCTTSE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC----------CCCccEEEE--CCCCCEEEEcCCCCcccc
Confidence            4568899984  55666665558999999987766544331          145788999  8899854443321   1 


Q ss_pred             cEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeEEeee-eCCCCCCeEEEEecCCCCe
Q 014154          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPI  315 (430)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~  315 (430)
                      .+..++..........+. .......++++| ++.++++-..++.|+.+|..++.....+ .......-..++|+|++.+
T Consensus       208 gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~  286 (433)
T 4hw6_A          208 GIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW  286 (433)
T ss_dssp             EEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred             eEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence            233333332211111222 224456788999 6655555556788999999877763222 2211223357999999985


Q ss_pred             EEEE-eCCCcEEEEECC--CCceeeEEEeecc---------------ccceEEeeec---------cccccc-cccCCCC
Q 014154          316 IASC-GLDSYLRFWDIK--TRQLLSAVFLKQH---------------LNEVVFDSAF---------ADKEVA-NAAADAP  367 (430)
Q Consensus       316 l~s~-~~dg~i~iwd~~--~~~~~~~~~~~~~---------------~~~~v~~~~~---------s~~g~~-~~~~~d~  367 (430)
                      |+.+ ...+.|+.+++.  ++.......+.+.               ... ...+++         .++|.+ ++-...+
T Consensus       287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~-P~giav~~n~~y~~dd~~g~lyvaD~~n~  365 (433)
T 4hw6_A          287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWG-PNQGIFVKNEAYAGEEDEYDFYFCDRDSH  365 (433)
T ss_dssp             EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSS-EEEEEEEECGGGTTSSCCEEEEEEETTTT
T ss_pred             EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcC-CccEEEEccccccccCCCCcEEEEECCCC
Confidence            5544 456789998865  3322110001111               111 356888         777777 6666677


Q ss_pred             ceEecCCC
Q 014154          368 MLEIQNGN  375 (430)
Q Consensus       368 ~i~~~~~~  375 (430)
                      .|+.++.+
T Consensus       366 ~I~~~~~~  373 (433)
T 4hw6_A          366 TVRVLTPE  373 (433)
T ss_dssp             EEEEECTT
T ss_pred             EEEEECCC
Confidence            88888743

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.20  E-value=0.0046  Score=64.21  Aligned_cols=230  Identities=10%  Similarity=0.007  Sum_probs=132.8

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCC---------------------
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKG---------------------  183 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------  183 (430)
                      -++. ..++.++|..+...        ....++.+.-+..+..++++|..+.++.+..+                     
T Consensus       708 g~v~-~~~~~LrI~~i~~~--------~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  778 (1158)
T 3ei3_A          708 SLAL-ANNSTLTIGTIDEI--------QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQA  778 (1158)
T ss_dssp             EEEE-ECSSCEEEEEECCS--------SSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHC
T ss_pred             cEEE-EcCCceEEEEeccc--------CCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhh
Confidence            3443 33456888887422        24455555566778888888877765544321                     


Q ss_pred             ----------------------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee-c-CCCCEEEEE
Q 014154          184 ----------------------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS-I-DDHRKFVAG  233 (430)
Q Consensus       184 ----------------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~l~s~  233 (430)
                                                  +.|++.|..+.+.+..+.-..        ...+.+++... . ....+|++|
T Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~--------nE~~~sv~~v~~~~~~~~~lvVG  850 (1158)
T 3ei3_A          779 LSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ--------NEYALSLVSCKLGKDPNTYFIVG  850 (1158)
T ss_dssp             SEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT--------TEEEEEEEEECCTTCCCCEEEEE
T ss_pred             hhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC--------CcceEEEEEEEEccCCCEEEEEE
Confidence                                        135555555554443333221        13344444321 2 224688888


Q ss_pred             e----------CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC
Q 014154          234 T----------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (430)
Q Consensus       234 ~----------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  303 (430)
                      +          ..|.|++|++...+..+..-....+++++++-- +| +|++|- ...|++|++...+.+..-..+ -..
T Consensus       851 Ta~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~-~~~  926 (1158)
T 3ei3_A          851 TAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNH-YNN  926 (1158)
T ss_dssp             EEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEE-CCC
T ss_pred             eeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeec-ccc
Confidence            6          357899999874321111122235788888743 35 555553 578999999866543311111 112


Q ss_pred             eEEEEecCCCCeEEEEeCCCcEEEEEC--CCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154          304 IRSIARHPTLPIIASCGLDSYLRFWDI--KTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       304 v~~i~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                      |..+.....+.+++.|..-..|.++..  ..+++...  -+......++++.|-.++.++.+..+|.+.++..++.
T Consensus       927 i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~--a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          927 IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI--ARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp             SCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE--EECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred             EEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE--EeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence            333333335778888887777776554  33333332  2233355578888887777788999999999988763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.19  E-value=0.0026  Score=56.91  Aligned_cols=197  Identities=8%  Similarity=-0.028  Sum_probs=119.8

Q ss_pred             CCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcE
Q 014154          162 SGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQV  239 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i  239 (430)
                      ...+..++|++....|+... ..+.|..+++........+....         .....+++  .+ .+.++++-...+.|
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~---------~~p~glav--d~~~g~ly~~d~~~~~I  140 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL---------ESPGGLAV--DWVHDKLYWTDSGTSRI  140 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SCCCEEEE--ETTTTEEEEEETTTTEE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC---------CCccEEEE--ecCCCeEEEEcCCCCeE
Confidence            34578899998776666554 56789999987654332222111         33567788  55 44555665667899


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CC-CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GS-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      .+.++..... ...+...-.....++++|.+..|+... .. +.|..+++.... ...+....-.....|+|+|++..|+
T Consensus       141 ~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY  218 (349)
T 3v64_C          141 EVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMY  218 (349)
T ss_dssp             EEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEE
T ss_pred             EEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEE
Confidence            9999886332 233333335678999999766665554 44 778888875433 2233221144678999998776665


Q ss_pred             EE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCC
Q 014154          318 SC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       318 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      .+ ...+.|..+|+.... ...+ +...... ...+++..+.-+++-...+.|..++.
T Consensus       219 ~aD~~~~~I~~~~~dG~~-~~~~-~~~~~~~-P~giav~~~~ly~td~~~~~V~~~~~  273 (349)
T 3v64_C          219 WVDAKHHVIERANLDGSH-RKAV-ISQGLPH-PFAITVFEDSLYWTDWHTKSINSANK  273 (349)
T ss_dssp             EEETTTTEEEEEETTSCS-CEEE-ECSSCSS-EEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCEEEEEeCCCCc-eEEE-EeCCCCC-ceEEEEECCEEEEecCCCCeEEEEEc
Confidence            55 456789999986433 2222 2222222 36677743333366666777777763

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.14  E-value=0.0045  Score=56.27  Aligned_cols=197  Identities=7%  Similarity=-0.071  Sum_probs=120.7

Q ss_pred             CCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcE
Q 014154          162 SGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQV  239 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i  239 (430)
                      ...+..++|++.+..|+.. ...+.|..+++........+....         .....+++  .+ .+.++++-...+.|
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~---------~~p~glav--d~~~g~lY~~d~~~~~I  183 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL---------ESPGGLAV--DWVHDKLYWTDSGTSRI  183 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC---------SCCCCEEE--ETTTTEEEEEETTTTEE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC---------CCccEEEE--EeCCCeEEEEcCCCCeE
Confidence            3567889999866666655 456789999987654333222211         23456777  55 44555555667789


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-C-CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      .+.++..... ...+...-.....++++|.+.+|+.... . +.|..+++............ -.....|+|+|++..|+
T Consensus       184 ~~~~~dg~~~-~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~-~~~PnGlavd~~~~~lY  261 (386)
T 3v65_B          184 EVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH-LFWPNGLTIDYAGRRMY  261 (386)
T ss_dssp             EECBTTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS-CSCEEEEEEEGGGTEEE
T ss_pred             EEEeCCCCce-EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC-CCCeeeEEEeCCCCEEE
Confidence            9998875332 3333333356789999997776665543 3 67888887543332222222 34678999998776665


Q ss_pred             EE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCC
Q 014154          318 SC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       318 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      .+ +..+.|..+|+.... ...+ +...... ...+++..+.-+++....+.|..++.
T Consensus       262 ~aD~~~~~I~~~d~dG~~-~~~~-~~~~~~~-P~giav~~~~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          262 WVDAKHHVIERANLDGSH-RKAV-ISQGLPH-PFAITVFEDSLYWTDWHTKSINSANK  316 (386)
T ss_dssp             EEETTTTEEEEECTTSCS-CEEE-ECSSCSS-EEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCEEEEEeCCCCe-eEEE-EECCCCC-ceEEEEECCEEEEeeCCCCeEEEEEC
Confidence            55 456789999986433 2322 2222222 36777744333466667778877764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.00032  Score=64.80  Aligned_cols=155  Identities=10%  Similarity=0.059  Sum_probs=99.8

Q ss_pred             ceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-CC----
Q 014154          164 TIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-DH----  237 (430)
Q Consensus       164 ~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg----  237 (430)
                      ....++++| ++..|+++...+.|+.+|+..+........          ......++|  ++++++|+++.. ++    
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~----------~~~P~~ia~--d~~G~~lyvad~~~~~~~~  205 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG----------LSKVRTICW--THEADSMIITNDQNNNDRP  205 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC----------CSCEEEEEE--CTTSSEEEEEECCSCTTSE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC----------CCCcceEEE--eCCCCEEEEEeCCCCcccc
Confidence            457889998 466777776668899999987655443331          145788999  889986666554 22    


Q ss_pred             cEEEEECCCCCcceEEEeecCCCeEEEEecC-CCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEP-DSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (430)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  316 (430)
                      .+.+++..........+.. ......++++| ++.++++-..++.|..|+...+................++|+|++++|
T Consensus       206 ~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~l  284 (430)
T 3tc9_A          206 NNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYA  284 (430)
T ss_dssp             EEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred             eEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence            3444444322211123322 23457888999 666666666778999999987765322222113457899999999955


Q ss_pred             EE-EeCCCcEEEEECC
Q 014154          317 AS-CGLDSYLRFWDIK  331 (430)
Q Consensus       317 ~s-~~~dg~i~iwd~~  331 (430)
                      +. -...+.|..++..
T Consensus       285 yv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          285 YIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEEETTTTEEEEEEEE
T ss_pred             EEEECCCCEEEEEeCC
Confidence            44 4567889998765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.11  E-value=0.0042  Score=54.74  Aligned_cols=198  Identities=9%  Similarity=-0.034  Sum_probs=118.9

Q ss_pred             CCceEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeC
Q 014154          162 SGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDK----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTN  235 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~  235 (430)
                      ......++|++.++.|+.+. ..+.|..+++..    ......+...         ......+++  .+ ++.+.++-..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~---------~~~p~glav--d~~~~~ly~~d~~   97 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------IQAPDGLAV--DWIHSNIYWTDSV   97 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS---------CSCCCEEEE--ETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC---------CCCcCEEEE--eecCCeEEEEECC
Confidence            45678899998776666554 568899999875    1211112111         033567787  54 4445555567


Q ss_pred             CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC--CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS--GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       236 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  313 (430)
                      .+.|.++++.... ....+.........++++|.+..|+.....  +.|..+++. +.....+....-.....++++|++
T Consensus        98 ~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~  175 (316)
T 1ijq_A           98 LGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLS  175 (316)
T ss_dssp             TTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTT
T ss_pred             CCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccC
Confidence            8899999987532 222333333567899999977666655543  688888874 333333322114567899999987


Q ss_pred             CeEEEEe-CCCcEEEEECCCCceeeEEEee-ccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          314 PIIASCG-LDSYLRFWDIKTRQLLSAVFLK-QHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       314 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      ..|+.+. ..+.|..+|+.. .....+... ..... ...+++.. +.+ ++-...+.|..++..
T Consensus       176 ~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~-P~giav~~-~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          176 GRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAH-PFSLAVFE-DKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSS-EEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             CEEEEEECCCCeEEEEecCC-CceEEEeecCCccCC-cEEEEEEC-CEEEEEECCCCeEEEEeCC
Confidence            7666554 567899999874 333333111 11122 35667754 444 666667788877753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.08  E-value=0.016  Score=60.30  Aligned_cols=325  Identities=8%  Similarity=0.005  Sum_probs=162.1

Q ss_pred             CCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeec--CCCCCceeEEeec-CCeEEEecCCCCcc
Q 014154           11 GCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASID--DSQNDPLLAVARK-NGLTDILNPLNGDL   87 (430)
Q Consensus        11 ~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~g~~l~~g~~-dg~i~iwd~~~~~~   87 (430)
                      .|....++.+. ++.+.++++..+  .+ ....... -...+.++++...  +...++++|+|.. |++|+|+++.+.+.
T Consensus       520 s~n~~~vvva~-g~~l~~fel~~~--~L-~~~~~~~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~  594 (1158)
T 3ei3_A          520 SCNSSQVVVAV-GRALYYLQIHPQ--EL-RQISHTE-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFEL  594 (1158)
T ss_dssp             EECSSEEEEEE-TTEEEEEEEETT--EE-EEEEEEE-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCE
T ss_pred             EeCCCEEEEEE-CCEEEEEEeeCC--ce-eeecccC-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCe
Confidence            34333444443 577888887753  11 1111211 2345666665541  1223578999996 99999999976544


Q ss_pred             cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE
Q 014154           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (430)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~  167 (430)
                      +.....       +......++.+......      ..+..+..+|.+..+.+....   +.- ...+...+. ..++.-
T Consensus       595 ~~~~~L-------~~~~~p~si~l~~~~~~------~~L~igl~dG~l~~~~~d~~t---g~l-~d~r~~~LG-~~pv~L  656 (1158)
T 3ei3_A          595 LHKEML-------GGEIIPRSILMTTFESS------HYLLCALGDGALFYFGLNIET---GLL-SDRKKVTLG-TQPTVL  656 (1158)
T ss_dssp             EEEEEC-------CSSCCEEEEEEEEETTE------EEEEEEETTSEEEEEEECTTT---CCE-EEEEEEECC-SSCCEE
T ss_pred             EEEEEC-------CCCCCCcEEEEEEeCCC------cEEEEEeCCCeEEEEEEcCCC---Ccc-ccceeEEcC-CCceEE
Confidence            432221       01112333444333221      367888888887766654211   000 011111122 233333


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCccee-EEEEeecCC-CCEEEEEeCCCcEEEEEC
Q 014154          168 SKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFT-SAAFLSIDD-HRKFVAGTNDHQVRLYDT  244 (430)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~-~~~~~~~~~-~~~l~s~~~dg~i~iwd~  244 (430)
                      ..+...+..-+.+..+....+|.-+ ++.... +..           ..+. ...|. +.. ..-++.. .++.++|..+
T Consensus       657 ~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~-----------~~v~~~~~F~-se~~~~g~v~~-~~~~LrI~~i  722 (1158)
T 3ei3_A          657 RTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNL-----------KEVNYMCPLN-SDGYPDSLALA-NNSTLTIGTI  722 (1158)
T ss_dssp             EEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSS-----------SCCCEEEEEC-CSSSTTEEEEE-CSSCEEEEEE
T ss_pred             EEEeeCCceeEEEECCCCEEEEEcC-CceEEeccCh-----------HHhceEeccC-cccCCCcEEEE-cCCceEEEEe
Confidence            3333333333333444455555433 222211 111           1122 22342 221 2334433 3556888877


Q ss_pred             CCCCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCC--------------------------------------------
Q 014154          245 SAQRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGS--------------------------------------------  279 (430)
Q Consensus       245 ~~~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d--------------------------------------------  279 (430)
                      ..... .++.+.. ...+..++++|..+.++++..+                                            
T Consensus       723 ~~~~~~~~~~ipL-~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  801 (1158)
T 3ei3_A          723 DEIQKLHIRTVPL-YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFG  801 (1158)
T ss_dssp             CCSSSEEEEEEEC-SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CC
T ss_pred             cccCCeeEEEEeC-CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcC
Confidence            54322 2334443 3567888888877665544311                                            


Q ss_pred             -----CcEEEEEccCCeEEeeeeCCCCCCeEEEE---ecCC-CCeEEEEe----------CCCcEEEEECCCCceeeEEE
Q 014154          280 -----GDLASVDIRTGKLLGCFIGKCSGSIRSIA---RHPT-LPIIASCG----------LDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       280 -----~~i~iwd~~~~~~~~~~~~~~~~~v~~i~---~~~~-~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~  340 (430)
                           +.|++.|..+.+.+..+.-.....+.+++   |..+ ..+|+.|.          ..|.|++|++..+++...  
T Consensus       802 ~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv--  879 (1158)
T 3ei3_A          802 EEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV--  879 (1158)
T ss_dssp             CEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE--
T ss_pred             CceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE--
Confidence                 23677787777776665533234455554   3322 46888875          347899999975443322  


Q ss_pred             eeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154          341 LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       341 ~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                      ......+.+++++-- +|++++ +-...+++|++...
T Consensus       880 ~~~~v~g~v~al~~~-~g~Lla-~ig~~l~vy~l~~~  914 (1158)
T 3ei3_A          880 AEKEVKGAVYSMVEF-NGKLLA-SINSTVRLYEWTTE  914 (1158)
T ss_dssp             EEEEESSCEEEEEEE-TTEEEE-EETTEEEEEEECTT
T ss_pred             EEEEcCCcCEEEeee-CCEEEE-EcCCEEEEEECCCC
Confidence            222234445665532 355433 34578999988653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.05  E-value=0.007  Score=55.26  Aligned_cols=200  Identities=9%  Similarity=-0.024  Sum_probs=121.7

Q ss_pred             CCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe----eeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEe
Q 014154          161 ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCE----KIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGT  234 (430)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~  234 (430)
                      ....+..++|++.+..|+... ..+.|+.+++....    ....+...         ......+++  .+ .+.+.++-.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~---------~~~p~glav--D~~~~~lY~~d~  178 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------IQAPDGLAV--DWIHSNIYWTDS  178 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS---------CSCEEEEEE--ETTTTEEEEEET
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC---------CCCcccEEE--EecCCceEEEEC
Confidence            346788999998777776654 46788888886521    11112111         134677888  55 455566666


Q ss_pred             CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC--CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      ..+.|.+.++..... ...+.........|++.|.+.+|+....  .+.|...++........+... -.....|+++++
T Consensus       179 ~~~~I~~~~~~g~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~-l~~P~glavd~~  256 (400)
T 3p5b_L          179 VLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLL  256 (400)
T ss_dssp             TTTEEEEECTTTCSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSS-CSCEEEEEEETT
T ss_pred             CCCeEEEEeCCCCce-EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECC-CCceEEEEEEeC
Confidence            778999999986432 3333333346789999997767766553  378888888543332222332 357899999988


Q ss_pred             CCeEEEEe-CCCcEEEEECCCCceeeEEEe-eccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          313 LPIIASCG-LDSYLRFWDIKTRQLLSAVFL-KQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       313 ~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      +..|+.+. ..+.|..+|+.... ...+.. .+.... ..++++..+.-+.+....+.|..++..
T Consensus       257 ~~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~-P~gl~v~~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          257 SGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAH-PFSLAVFEDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCC-CEEEEECSSTTSS-EEEEEEETTEEEEEESSSCSEEEEESS
T ss_pred             CCEEEEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCC-CEEEEEeCCEEEEecCCCCeEEEEEcC
Confidence            77776664 56789999986433 333211 112222 356666444344666666777777643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.04  E-value=0.0064  Score=54.36  Aligned_cols=162  Identities=6%  Similarity=-0.114  Sum_probs=99.7

Q ss_pred             CceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCC-CcE
Q 014154          163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTND-HQV  239 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~d-g~i  239 (430)
                      .....+++++.+..|+ +-...+.|.+.+++.......+...         ......+++  .|.+. ++++-... +.|
T Consensus       116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~---------l~~P~~iav--dp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS---------LEKPRAIAL--HPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT---------CSCEEEEEE--ETTTTEEEEEECSSSCEE
T ss_pred             CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC---------CCCcceEEE--ecCcCeEEEeccCCCCEE
Confidence            3456789987555554 4455678999998754332222211         144678888  66444 44444444 788


Q ss_pred             EEEECCCCCcceEEE-eecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          240 RLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      ..+++....  ...+ ...-.....|+++|++..|+.+. ..+.|..+|+........+... ......+++. .+.+++
T Consensus       185 ~r~~~dG~~--~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~-~~~ly~  260 (349)
T 3v64_C          185 EASSMDGSG--RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVF-EDSLYW  260 (349)
T ss_dssp             EEEETTSCS--CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEEE-TTEEEE
T ss_pred             EEEeCCCCC--cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-CCCceEEEEE-CCEEEE
Confidence            888887532  2222 22234578999998777666654 4578999998643322223332 3456778883 444555


Q ss_pred             EEeCCCcEEEEECCCCceeeEE
Q 014154          318 SCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       318 s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      +-...+.|..++..+|+.+..+
T Consensus       261 td~~~~~V~~~~~~~G~~~~~i  282 (349)
T 3v64_C          261 TDWHTKSINSANKFTGKNQEII  282 (349)
T ss_dssp             EETTTTEEEEEETTTCCSCEEE
T ss_pred             ecCCCCeEEEEEccCCCccEEe
Confidence            5556788988887777776664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.02  E-value=0.0061  Score=53.37  Aligned_cols=234  Identities=9%  Similarity=-0.042  Sum_probs=120.8

Q ss_pred             eeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEcc-CC
Q 014154           55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTT-KG  133 (430)
Q Consensus        55 ~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g  133 (430)
                      ..+.+  .|+|+++++-..++.|..||... .....+..         .....++.+-+.         +.++.+.. .+
T Consensus        35 egia~--~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~---------~~~p~gia~~~d---------G~l~vad~~~~   93 (306)
T 2p4o_A           35 ENLAS--APDGTIFVTNHEVGEIVSITPDG-NQQIHATV---------EGKVSGLAFTSN---------GDLVATGWNAD   93 (306)
T ss_dssp             EEEEE--CTTSCEEEEETTTTEEEEECTTC-CEEEEEEC---------SSEEEEEEECTT---------SCEEEEEECTT
T ss_pred             ceEEE--CCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC---------CCCceeEEEcCC---------CcEEEEeccCC
Confidence            34455  56777666666789999999753 33222211         123444444322         23443332 22


Q ss_pred             eeEEEEeeecCccccCCCcceE-EeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEeeCCCCCCCCCCc
Q 014154          134 KASMRSIEVTKVSAESSCSTVK-SWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIF  211 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~  211 (430)
                      ...|+.+..       .++.+. +...........++..+.+..+++-..++.|+++|...+. .+..............
T Consensus        94 ~~~v~~~d~-------~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~  166 (306)
T 2p4o_A           94 SIPVVSLVK-------SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSES  166 (306)
T ss_dssp             SCEEEEEEC-------TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTC
T ss_pred             cceEEEEcC-------CCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccC
Confidence            333443321       112332 2222222233445555544444444458899999987653 2221111000000000


Q ss_pred             CCcceeEEEEeecCCCCEE-EEEeCCCcEEEEECCC-CCc-ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154          212 TPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSA-QRR-PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~  288 (430)
                      .....+.+    ++++..| ++-...+.|..|++.. +.. ....+.. ......++++++|+++++....+.|.++|..
T Consensus       167 ~~~~pngi----s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          167 VFPAANGL----KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             CSCSEEEE----EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CCCcCCCc----CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            00223344    3466555 4445678899999874 221 1122221 1345678999999877766677899999975


Q ss_pred             CCeEEe--eeeCCCCCCeEEEEec---CCCCeEEEEeCCC
Q 014154          289 TGKLLG--CFIGKCSGSIRSIARH---PTLPIIASCGLDS  323 (430)
Q Consensus       289 ~~~~~~--~~~~~~~~~v~~i~~~---~~~~~l~s~~~dg  323 (430)
                       ++...  .+... ....++++|.   |++..|+.++..+
T Consensus       242 -G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          242 -RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             -CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             -CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCCC
Confidence             65532  33322 3568999998   8887776665543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.01  E-value=0.0054  Score=53.90  Aligned_cols=204  Identities=12%  Similarity=0.152  Sum_probs=120.4

Q ss_pred             CCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCce-EEEEcc--CCeeEEEE
Q 014154           63 QNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRT-LLTCTT--KGKASMRS  139 (430)
Q Consensus        63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~--~g~~~v~~  139 (430)
                      |...+++.....+-+.+||+ +|+.+..+..          ..+..+.+-+.-... +..... +++.-.  .+++.++.
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~----------g~~nnVD~r~~~~l~-g~~~dla~as~R~~~~n~l~vf~  105 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT----------GKLNNVDIRYDFPLN-GKKVDIAAASNRSEGKNTIEIYA  105 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSCEEEEECC----------SCEEEEEEEEEEEET-TEEEEEEEEEECSTTCCEEEEEE
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCcEEEEccC----------CCcccEEEecccccC-CceEeEEEEeCCCCCCCeEEEEE
Confidence            34455666667789999999 8988887653          234444333211000 000012 222333  46788888


Q ss_pred             eeecCccccCCCcceEEee-----ecCC-CceEEEEE--cCC-CC-EEEEEeCCCeEEEEECC-------CCeeeEeeCC
Q 014154          140 IEVTKVSAESSCSTVKSWN-----VCAS-GTIAFSKV--DIS-EK-FSLFGGKGVEVNVWDLD-------KCEKIWTAKP  202 (430)
Q Consensus       140 ~~~~~~~~~~~~~~i~~~~-----~~~~-~~i~~~~~--~~~-~~-~l~~~~~d~~i~~~d~~-------~~~~~~~~~~  202 (430)
                      +.-..       +.+...-     +... ..+..+++  +|. +. ++++...+|.+..|++.       +.+.++++..
T Consensus       106 iDp~~-------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l  178 (355)
T 3amr_A          106 IDGKN-------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM  178 (355)
T ss_dssp             ECTTT-------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             ECCCC-------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC
Confidence            74221       1222221     0122 45666777  674 43 68888889999999883       2345555554


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCC----CcceEEEe-ec-CCCeEEEEe--cCCCC-EE
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----RRPVMSFD-FR-ETPIKAVAE--EPDSF-NI  273 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~-~~-~~~i~~~~~--sp~~~-~l  273 (430)
                      .          ..+..+..  .+....|+.+-++.-|..|+....    ...+..+. ++ ...+..|++  .++++ +|
T Consensus       179 g----------sq~Egcvv--Dd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyL  246 (355)
T 3amr_A          179 N----------SQTEGMAA--DDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYL  246 (355)
T ss_dssp             S----------SCEEEEEE--ETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEE
T ss_pred             C----------CCcceEEE--cCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEE
Confidence            3          45777777  677788999999877777775421    11233332 11 246788887  45555 67


Q ss_pred             EEEe-CCCcEEEEEcc-CCeEEeeee
Q 014154          274 YIGN-GSGDLASVDIR-TGKLLGCFI  297 (430)
Q Consensus       274 ~~~~-~d~~i~iwd~~-~~~~~~~~~  297 (430)
                      ++++ .++...+||.. +.+.+..|.
T Consensus       247 ivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          247 MASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             EEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            7766 56799999996 666666665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.99  E-value=0.0072  Score=53.22  Aligned_cols=197  Identities=9%  Similarity=-0.020  Sum_probs=120.2

Q ss_pred             CceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeee-EeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcE
Q 014154          163 GTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQV  239 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i  239 (430)
                      .....++|++.+..|+.. ...+.|..+++...... ..+...         ......+++  .+ .+.++++-...+.|
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~---------l~~p~glav--d~~~g~ly~~d~~~~~I  103 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG---------LLSPDGLAC--DWLGEKLYWTDSETNRI  103 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC---------CSCCCEEEE--ETTTTEEEEEETTTTEE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC---------CCCccEEEE--EcCCCeEEEEECCCCEE
Confidence            356688898866666554 45678888988765211 111110         023567777  54 45555665667899


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC--CCcEEEEEccCCeEEeee-eCCCCCCeEEEEecCCCCeE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCF-IGKCSGSIRSIARHPTLPII  316 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l  316 (430)
                      .++++..... ...+.........+++.|.+.+|+....  .+.|..+++.. .....+ ... -...+.|+|+|++..|
T Consensus       104 ~~~~~dG~~~-~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~-l~~Pnglavd~~~~~l  180 (318)
T 3sov_A          104 EVSNLDGSLR-KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSE-IYWPNGLTLDYEEQKL  180 (318)
T ss_dssp             EEEETTSCSC-EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSS-CSCEEEEEEETTTTEE
T ss_pred             EEEECCCCcE-EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECC-CCCccEEEEeccCCEE
Confidence            9999875332 2233233456789999997767766653  57888888753 322233 222 3467899999977666


Q ss_pred             EEE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          317 ASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       317 ~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      +.+ +..+.|..+|+.. .....+ ..+.... ...+++..++-+.+-...+.|..++...
T Consensus       181 Y~aD~~~~~I~~~d~dG-~~~~~~-~~~~~~~-P~glav~~~~lywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          181 YWADAKLNFIHKSNLDG-TNRQAV-VKGSLPH-PFALTLFEDILYWTDWSTHSILACNKYT  238 (318)
T ss_dssp             EEEETTTTEEEEEETTS-CSCEEE-ECSCCSC-EEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EEEECCCCEEEEEcCCC-CceEEE-ecCCCCC-ceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence            555 4567899999864 333332 2222222 3667776554456666677888777643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.90  E-value=0.0036  Score=57.76  Aligned_cols=197  Identities=10%  Similarity=-0.005  Sum_probs=108.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeee-EeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEe
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGV-----EVNVWDLDKCEKI-WTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGT  234 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~  234 (430)
                      ......++++++++ |+++...+     .+..++...+... ..+.          .......+++  .| ++.+.++-.
T Consensus       181 ~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~----------~~~~P~giav--d~~~G~lyv~d~  247 (433)
T 4hw6_A          181 IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC----------NARGAKTCAV--HPQNGKIYYTRY  247 (433)
T ss_dssp             CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE----------ECSSBCCCEE--CTTTCCEEECBT
T ss_pred             CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc----------ccCCCCEEEE--eCCCCeEEEEEC
Confidence            35688999999999 55454322     1333332211100 0000          0133456777  67 676666666


Q ss_pred             CCCcEEEEECCCCCcceEEEeec-CCCeEEEEecCCCCEEEEEe-CCCcEEEEEcc--CCeE--EeeeeCC---------
Q 014154          235 NDHQVRLYDTSAQRRPVMSFDFR-ETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR--TGKL--LGCFIGK---------  299 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~~~~~~~~~-~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~--~~~~--~~~~~~~---------  299 (430)
                      .++.|+.+|..++......+... ...-..++|+|++++|+.+. ..+.|+.+++.  ++..  ...+.+.         
T Consensus       248 ~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg  327 (433)
T 4hw6_A          248 HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDG  327 (433)
T ss_dssp             TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCE
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCC
Confidence            77889999998654211222211 22335799999999665554 56789998865  3321  1122111         


Q ss_pred             -----CCCCeEEEEe---------cCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc------cc---------ceEE
Q 014154          300 -----CSGSIRSIAR---------HPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH------LN---------EVVF  350 (430)
Q Consensus       300 -----~~~~v~~i~~---------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~---------~~v~  350 (430)
                           .-.....+++         .+++.++++-...+.|+.++. +|... ++.-.+.      ..         ....
T Consensus       328 ~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~  405 (433)
T 4hw6_A          328 MGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPT  405 (433)
T ss_dssp             EGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEE
T ss_pred             cccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCc
Confidence                 0123677899         777777777677788999985 55433 3211110      00         1135


Q ss_pred             eeecc-ccccc-cccCCCCceEecC
Q 014154          351 DSAFA-DKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       351 ~~~~s-~~g~~-~~~~~d~~i~~~~  373 (430)
                      .++++ ++|.+ ++-.....|+.++
T Consensus       406 giavd~~~g~lyVaD~~n~rIr~i~  430 (433)
T 4hw6_A          406 SIAYDMKRKCFYIGDCDNHRVRKIA  430 (433)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             EEEEECCCCEEEEEeCCCCEEEEEe
Confidence            67777 56666 5544555666554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.90  E-value=0.0002  Score=71.38  Aligned_cols=114  Identities=4%  Similarity=-0.042  Sum_probs=76.2

Q ss_pred             ceeEEEEeec-CCCCEEEEEeC-CC----cEEEEECCCC-CcceEEEeecCCCeEEEEecCCCCEEEEEeCC-----CcE
Q 014154          215 WFTSAAFLSI-DDHRKFVAGTN-DH----QVRLYDTSAQ-RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-----GDL  282 (430)
Q Consensus       215 ~v~~~~~~~~-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----~~i  282 (430)
                      .+...+|  + |||++|+.+.. +|    .|+++|+.++ +.....+..   ....++|+||++.|+....+     ..|
T Consensus       175 ~~~~~~~--S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKP--APPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEE--CTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEe--cCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            4667788  9 99998876543 33    4999999987 521111221   13468899999888777665     358


Q ss_pred             EEEEccCCeE--EeeeeCCCCCCeEEEEecCCCCeEEEEe---CCCcEEEEECCCC
Q 014154          283 ASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCG---LDSYLRFWDIKTR  333 (430)
Q Consensus       283 ~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~---~dg~i~iwd~~~~  333 (430)
                      +++++.+++.  ...+..........+.|+|||++|+..+   ....|+++|+.++
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            8888877642  2233322134567889999999887665   3346889999875

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=0.00032  Score=64.89  Aligned_cols=153  Identities=10%  Similarity=0.051  Sum_probs=97.9

Q ss_pred             ceeEEEEeecC-CCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C----cEEEEEcc
Q 014154          215 WFTSAAFLSID-DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G----DLASVDIR  288 (430)
Q Consensus       215 ~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~----~i~iwd~~  288 (430)
                      ....+++  +| ++..|+++...+.|+.+|+....  +..+.........|+|++++++|+++... +    .+.+++. 
T Consensus       138 ~P~~lav--dp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-  212 (430)
T 3tc9_A          138 GAVWLSF--DPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-  212 (430)
T ss_dssp             CCCEEEE--ETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-
T ss_pred             CCCEEEE--CCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-
Confidence            4567888  66 34556655555889999998643  34444344568899999999977666542 2    2444443 


Q ss_pred             CCeEE--eeeeCCCCCCeEEEEecC-CCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc-c-ccc
Q 014154          289 TGKLL--GCFIGKCSGSIRSIARHP-TLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAA  363 (430)
Q Consensus       289 ~~~~~--~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~  363 (430)
                      .+...  ..+..  ......++++| ++.++++-..++.|+.|+..++..........  ......++|+|+|+ + ++-
T Consensus       213 ~g~~~~~~~l~~--~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~--~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          213 ESGFKVITELTK--GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD--SGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             GGTSCSEEEEEE--CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS--SSCCEEEEECTTSSEEEEEE
T ss_pred             CCceeeeeeecc--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC--CCcceeEEEcCCCCEEEEEE
Confidence            33221  22222  23457788999 67666666677899999998765433221211  22347899999998 4 666


Q ss_pred             CCCCceEecCCCC
Q 014154          364 ADAPMLEIQNGND  376 (430)
Q Consensus       364 ~~d~~i~~~~~~~  376 (430)
                      ...+.|..++.+.
T Consensus       289 ~~~~~I~~~~~d~  301 (430)
T 3tc9_A          289 VNQHYILRSDYDW  301 (430)
T ss_dssp             TTTTEEEEEEEET
T ss_pred             CCCCEEEEEeCCc
Confidence            6788888887653

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.84  E-value=0.015  Score=52.29  Aligned_cols=236  Identities=13%  Similarity=0.112  Sum_probs=142.7

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      +|..+.||.-. ..++.|+|+++...+..+...         ..+   .+|..-.       ...+.--.+..+.-|++.
T Consensus        74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~---------e~V---vfWkWis-------~~~l~lVT~taVyHWsi~  133 (494)
T 1bpo_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDV---TFWKWIS-------LNTVALVTDNAVYHWSME  133 (494)
T ss_dssp             CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS---------SCC---CEEEEEE-------TTEEEEECSSEEEEEESS
T ss_pred             CCCCcEEEEec-CCeEEEEchHHhhhhcceecC---------CCc---eEEEecC-------CCeEEEEcCCeeEEeccc
Confidence            56667777754 688999999888777766531         233   3443322       234444556779999975


Q ss_pred             ecCccccCCCcceEEeeecC---CCceEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154          142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGGK-------GVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  211 (430)
                      .       ...++++|+...   +..|.....+++.++++..+-       .|.+.+|..+... ...+.+|.       
T Consensus       134 ~-------~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGha-------  198 (494)
T 1bpo_A          134 G-------ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHA-------  198 (494)
T ss_dssp             S-------SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSE-------
T ss_pred             C-------CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeee-------
Confidence            3       234888887432   356777888889998875442       4678899987543 23344442       


Q ss_pred             CCcceeEEEEeecCC-CCEEEEEeC---CCcEEEEECCCC---Ccc--eEEEe--e----cCCCeEEEEecCCCCEEEEE
Q 014154          212 TPTWFTSAAFLSIDD-HRKFVAGTN---DHQVRLYDTSAQ---RRP--VMSFD--F----RETPIKAVAEEPDSFNIYIG  276 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~-~~~l~s~~~---dg~i~iwd~~~~---~~~--~~~~~--~----~~~~i~~~~~sp~~~~l~~~  276 (430)
                        .....+...-.+. ..+++.+..   .+.++|-++...   ..+  .....  .    ...--.++..++.-..++.-
T Consensus       199 --a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi  276 (494)
T 1bpo_A          199 --ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (494)
T ss_dssp             --EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred             --eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence              1111111100001 123333333   268999988643   111  11111  1    12344577888888899999


Q ss_pred             eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154          277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       277 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  335 (430)
                      +.-|.|++||+.++.+++.-+-. ...|...+-+....-++.....|.|.-..+.....
T Consensus       277 TK~G~i~lyDleTgt~i~~nrIs-~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i  334 (494)
T 1bpo_A          277 TKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI  334 (494)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred             ecCceEEEEecccceeeeeeccc-CCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence            99999999999999998776654 55666555555444555555777776666655443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.77  E-value=0.018  Score=50.69  Aligned_cols=236  Identities=10%  Similarity=-0.062  Sum_probs=131.3

Q ss_pred             eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  146 (430)
                      +|+.+.. ..|+..|+........+..         .....++.+-....       ..+++-...+.+..+++..... 
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~---------~~~p~g~~~d~~~~-------~ly~~D~~~~~I~~~~~~g~~~-   64 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASN-------RIYWSDLSQRMICSTQLDRAHG-   64 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECS---------CSSEEEEEEETTTT-------EEEEEETTTTEEEEEEC------
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcC---------CCceEEEEEEeCCC-------EEEEEECCCCcEEEEECCCCCC-
Confidence            3444443 5688888876654433321         12444555433322       2444445556666666542100 


Q ss_pred             ccCCCcceEEeeecCCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                       +  .....+.. ..-.....+++++.+..|+. -...+.|.+++++.......+...         ......+++  .|
T Consensus        65 -~--~~~~~~~~-~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~---------~~~P~~iav--dp  129 (316)
T 1ijq_A           65 -V--SSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN---------GSKPRAIVV--DP  129 (316)
T ss_dssp             ------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT---------TCCEEEEEE--ET
T ss_pred             -C--cccEEEEe-CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECC---------CCCcceEEe--CC
Confidence             0  00111221 11245678899875555554 456789999998754332222111         134678888  66


Q ss_pred             CCCEEEEEeC-C-CcEEEEECCCCCcceEEE-eecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeee-eC-C
Q 014154          226 DHRKFVAGTN-D-HQVRLYDTSAQRRPVMSF-DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCF-IG-K  299 (430)
Q Consensus       226 ~~~~l~s~~~-d-g~i~iwd~~~~~~~~~~~-~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~-~~-~  299 (430)
                      .+..|+.+.. . +.|..+++....  ...+ ...-.....|+++|++..|+.+. ..+.|..+|+..... ..+ .. .
T Consensus       130 ~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~  206 (316)
T 1ijq_A          130 VHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEK  206 (316)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCC--EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTT
T ss_pred             CCCEEEEEccCCCCeEEEEcCCCCC--eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCC
Confidence            5555544443 3 688888886422  2322 22234678999999877776665 457899999864322 222 21 1


Q ss_pred             CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154          300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       300 ~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      .......+++. .+.++++-...+.|..++..+++.+..+
T Consensus       207 ~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          207 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            12346778875 3455555566788999998888776664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.75  E-value=0.02  Score=56.96  Aligned_cols=198  Identities=10%  Similarity=-0.037  Sum_probs=115.1

Q ss_pred             CCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCC----eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC-CEEEEEeC
Q 014154          162 SGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH-RKFVAGTN  235 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~  235 (430)
                      ...+..+++++....|+.. ...+.|+.+++...    .....+....         .....|++  .+.+ +++++-..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l---------~~P~GLAv--D~~~~~LY~tD~~  491 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI---------QAPDGLAV--DWIHSNIYWTDSV  491 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC---------SCCCEEEE--ETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC---------CCcceeee--eecCCcEEEEecC
Confidence            3567789999866666554 44577888888642    1122222111         34567788  5555 45556567


Q ss_pred             CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-C-CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154          236 DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       236 dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  313 (430)
                      .+.|.+.++..... ...+.........|++.|...+|+.... . +.|...++........+... -.....|++++.+
T Consensus       492 ~~~I~v~~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~-l~~P~GLavD~~~  569 (791)
T 3m0c_C          492 LGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLLS  569 (791)
T ss_dssp             TTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETTT
T ss_pred             CCeEEEEeCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC-CCCceEEEEecCC
Confidence            78999999986332 2333333456889999998767766653 2 67888888644433333332 4578999999877


Q ss_pred             CeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecC
Q 014154          314 PIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQN  373 (430)
Q Consensus       314 ~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~  373 (430)
                      ..|+.+. ..+.|..+++........+...+.... ..+|++..+.-|++-...+.|...+
T Consensus       570 ~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~-P~glav~~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          570 GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH-PFSLAVFEDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSS-EEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCC-CCEEEEeCCEEEEEECCCCEEEEEe
Confidence            7766664 456799999864433322111112222 2455554332224444555555544

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.72  E-value=0.00027  Score=69.62  Aligned_cols=198  Identities=9%  Similarity=-0.015  Sum_probs=112.5

Q ss_pred             CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCC----eeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCC
Q 014154          163 GTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKC----EKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTND  236 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~d  236 (430)
                      ..+..++|++.+..|+... ..+.|+.+++...    .....+..      .   ......+++  .+ .+.++++-...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~------~---~~~P~glav--D~~~g~LY~tD~~~  474 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR------D---IQAPDGLAV--DWIHSNIYWTDSVL  474 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS------C---C--CCCEEC--CCSSSBCEECCTTT
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC------C---CCCcceEEE--EeeCCcEEEEeccC
Confidence            3466788988777777654 4578888888641    11111110      0   123456677  43 44555555567


Q ss_pred             CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-C-CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC
Q 014154          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-S-GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP  314 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~  314 (430)
                      +.|.++++..... ...+.........|+++|.+.+|+.... . +.|..+++.... ...+....-...+.|+|+|++.
T Consensus       475 ~~I~v~d~dg~~~-~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~  552 (699)
T 1n7d_A          475 GTVSVADTKGVKR-KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSG  552 (699)
T ss_dssp             SCEEEEBSSSCCE-EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTC
T ss_pred             CeEEEEecCCCce-EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCC
Confidence            8899999875331 2222222245678899997666665543 2 678888774322 2222211134567899999765


Q ss_pred             eEEEE-eCCCcEEEEECCCCceeeEEE-eeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          315 IIASC-GLDSYLRFWDIKTRQLLSAVF-LKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       315 ~l~s~-~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      .|+.+ +..+.|.++++.... ...+. ..+.... ...+++..+.-+++....+.|..++..
T Consensus       553 ~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~-P~glavd~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          553 RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAH-PFSLAVFEDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             CEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSS-CCCCEEETTEEEEECSTTTCEEEEETT
T ss_pred             EEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCC-ceEeEEECCEEEEEeCCCCeEEEEEcc
Confidence            55544 566789999986433 22221 1111111 245666555444666667788888754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.65  E-value=0.0054  Score=53.42  Aligned_cols=162  Identities=12%  Similarity=0.110  Sum_probs=105.7

Q ss_pred             ceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEe-eCCCC--CCCCCCcCCcceeEEEEee-cCCCCEEEEEe----
Q 014154          164 TIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWT-AKPPP--KNSLGIFTPTWFTSAAFLS-IDDHRKFVAGT----  234 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~-~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~l~s~~----  234 (430)
                      ...+++|++....|+.++ ..++|..|+...+..... +....  ..     ....+..+.+.. .|++.++++..    
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~-----~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGD-----GEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSC-----CSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCC-----CcceeeEEEEeccCCCCcEEEEEccccc
Confidence            345788888667777666 689999999975543322 21100  00     012356777710 15666666543    


Q ss_pred             ---------CCCcEEEEECC---CCCcceEEEee--c----------C-CCeEEEEecCCCCEEEEEeCC-CcEEEEEcc
Q 014154          235 ---------NDHQVRLYDTS---AQRRPVMSFDF--R----------E-TPIKAVAEEPDSFNIYIGNGS-GDLASVDIR  288 (430)
Q Consensus       235 ---------~dg~i~iwd~~---~~~~~~~~~~~--~----------~-~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~  288 (430)
                               .+..|..||+.   +++. +.....  .          . .....++..++|+..++++.. +.|..++..
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~-~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKP-VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCC-SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCE-EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence                     15779999999   6553 433331  1          1 247889999999999999888 888888875


Q ss_pred             CCeEEeeee-----CCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          289 TGKLLGCFI-----GKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       289 ~~~~~~~~~-----~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      .... ..+.     .......+.|+++|++..|++....|.|..+|+.+
T Consensus       168 G~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          168 GKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            3322 2221     11123467999999999888887799999999884

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.64  E-value=0.0023  Score=62.69  Aligned_cols=188  Identities=12%  Similarity=0.006  Sum_probs=101.4

Q ss_pred             EEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CC-----CcE
Q 014154          167 FSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-ND-----HQV  239 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-----g~i  239 (430)
                      ++++..++.++++|+. +..+.+||..+.+-......+.        +.+-.+++.  .+++++++.|+ .+     ..+
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~--------~R~~~s~~~--~~dg~iyv~GG~~~~~~~~~~~  316 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV--------ARGYQSSAT--MSDGRVFTIGGSWSGGVFEKNG  316 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS--------CCSSCEEEE--CTTSCEEEECCCCCSSSCCCCE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc--------cccccceEE--ecCCeEEEEeCcccCCcccccc
Confidence            4667788999999884 4589999998764332211111        112233444  46889999988 34     468


Q ss_pred             EEEECCCCCcceEEEeec-----CCCeEEEEecCCCCEEEEEeCC---------CcEEEEEccCCeEEeeeeCCC-----
Q 014154          240 RLYDTSAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKC-----  300 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~-----  300 (430)
                      .+||+.+..  ...+...     ...-....+..++..++.|+.+         ..+..||..+.........+.     
T Consensus       317 e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~  394 (656)
T 1k3i_A          317 EVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV  394 (656)
T ss_dssp             EEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred             eEeCCCCCc--ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccccc
Confidence            999998743  2222100     0000001223455555566544         356788888766433222110     


Q ss_pred             ---CCCeEEEEecC-CCCeEEEEeCCC-----------cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccC
Q 014154          301 ---SGSIRSIARHP-TLPIIASCGLDS-----------YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAA  364 (430)
Q Consensus       301 ---~~~v~~i~~~~-~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~  364 (430)
                         ...-.++.|.. ++++++.|+.++           .|.+||..+..-.....-..+....-.+++..|+|++ ++++
T Consensus       395 ~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG  474 (656)
T 1k3i_A          395 APDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG  474 (656)
T ss_dssp             CCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred             CCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence               01224455543 677888887543           6788888776544321001111111134455678888 7777


Q ss_pred             CC
Q 014154          365 DA  366 (430)
Q Consensus       365 ~d  366 (430)
                      .+
T Consensus       475 ~~  476 (656)
T 1k3i_A          475 QR  476 (656)
T ss_dssp             BS
T ss_pred             cc
Confidence            54

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.58  E-value=0.019  Score=50.80  Aligned_cols=195  Identities=8%  Similarity=-0.058  Sum_probs=104.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      .+..+.+.+++..++.+ .++.|.. ..+.++.-......        ....+..+.+  .+++.+++++...+..+-+|
T Consensus       123 ~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~--------~~~~~~~~~~--~~~~~~~~~g~~G~~~~S~d  190 (327)
T 2xbg_A          123 SPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQE--------AIGVMRNLNR--SPSGEYVAVSSRGSFYSTWE  190 (327)
T ss_dssp             CEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECS--------CCCCEEEEEE--CTTSCEEEEETTSSEEEEEC
T ss_pred             CeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecC--------CCcceEEEEE--cCCCcEEEEECCCcEEEEeC
Confidence            45667766566555544 4554432 22223221111111        0135778888  67777776654433333444


Q ss_pred             CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC---CCCCeEEEEecCCCCeEEEEe
Q 014154          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---CSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      -. +..-...-......+..+.+.+++..+ +++.+|.+++.+...++--..+...   ....+..+.+.+++.+++++ 
T Consensus       191 ~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-  267 (327)
T 2xbg_A          191 PG-QTAWEPHNRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-  267 (327)
T ss_dssp             TT-CSSCEEEECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-
T ss_pred             CC-CCceeECCCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-
Confidence            31 121111112344678899999988655 4556788877643324332222211   12358899999887766665 


Q ss_pred             CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCC
Q 014154          321 LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       321 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      .+|.| ++....|+.-..+.........+.++.|.+++.+++++.+|.|.-++.
T Consensus       268 ~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          268 GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            46766 444554544333211101123357788887777778888898877654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.53  E-value=0.051  Score=49.49  Aligned_cols=238  Identities=9%  Similarity=-0.097  Sum_probs=133.4

Q ss_pred             eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  146 (430)
                      +|+.+ ....|+..++........+..         ...+.++.+-....       ..+++-...+.+..+++..... 
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~---------~~~~~~l~~d~~~~-------~lywsD~~~~~I~~~~~~g~~~-  146 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYTSLIPN---------LRNVVALDTEVASN-------RIYWSDLSQRMICSTQLDRAHG-  146 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCEEEECS---------CSCEEEEEEETTTT-------EEEEEETTTTEEEEEEC------
T ss_pred             eeEEe-ccceeEEEccCCcceeEeccc---------cCcceEEeeeeccC-------ceEEEecCCCeEEEEEcccCCC-
Confidence            44444 347888888865543332221         13455565544332       2344444556666555432110 


Q ss_pred             ccCCCcceEEeeecCCCceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                         ......+.. ..-.....+++++.+..|+ +-...+.|.+.+++.......+...         ......+++  .|
T Consensus       147 ---~~~~~~~~~-~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~---------~~~P~~iav--dp  211 (400)
T 3p5b_L          147 ---VSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN---------GSKPRAIVV--DP  211 (400)
T ss_dssp             ----CCCEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS---------SCCEEEEEE--ET
T ss_pred             ---CCcceEEEe-CCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC---------CCCcceEEE--ec
Confidence               000112222 2234677899988554454 4456778999998754433222211         144678888  66


Q ss_pred             CCCEEEEEeC--CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCC-CC
Q 014154          226 DHRKFVAGTN--DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-CS  301 (430)
Q Consensus       226 ~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~~  301 (430)
                      .+..|+....  .+.|...++..... ...+...-.....|+++|++..|+.+. ..+.|..+|+........+... .-
T Consensus       212 ~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l  290 (400)
T 3p5b_L          212 VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL  290 (400)
T ss_dssp             TTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT
T ss_pred             ccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC
Confidence            5555554442  36899999875332 223333335678999998887777665 4578999998644332222221 12


Q ss_pred             CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      ....++++. .+.++++-...+.|..+|..+|+.+..+
T Consensus       291 ~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          291 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            345677773 3345556566788999998888877764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.52  E-value=0.041  Score=48.30  Aligned_cols=163  Identities=6%  Similarity=-0.116  Sum_probs=99.9

Q ss_pred             CceEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe--CCCcE
Q 014154          163 GTIAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQV  239 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i  239 (430)
                      .....+++++.+..|+ +-...+.|.+++++...........         ......+++  .|.+..|+.+.  ..+.|
T Consensus        79 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~---------~~~P~giav--dp~~g~ly~td~~~~~~I  147 (318)
T 3sov_A           79 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQE---------LDQPRAIAL--DPSSGFMYWTDWGEVPKI  147 (318)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------CSSEEEEEE--EGGGTEEEEEECSSSCEE
T ss_pred             CCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCC---------CCCccEEEE--eCCCCEEEEEecCCCCEE
Confidence            3466788887555554 4455678999998653322222111         145678888  66555555544  35788


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s  318 (430)
                      ...++..... .......-.....|+++|++..|+.+. ..+.|..+|+........+.+. ......+++.. +.++.+
T Consensus       148 ~r~~~dG~~~-~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~glav~~-~~lywt  224 (318)
T 3sov_A          148 ERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFE-DILYWT  224 (318)
T ss_dssp             EEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC-CSCEEEEEEET-TEEEEE
T ss_pred             EEEEcCCCCe-EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC-CCCceEEEEeC-CEEEEE
Confidence            8888875322 222222234568999999777666654 5678999998643322222322 44567788753 344555


Q ss_pred             EeCCCcEEEEECCCCceeeEE
Q 014154          319 CGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       319 ~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      -...+.|..++..+|+....+
T Consensus       225 d~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          225 DWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             ETTTTEEEEEETTTCCSCEEE
T ss_pred             ecCCCeEEEEECCCCCceEEE
Confidence            556788999999888876664

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.38  E-value=0.074  Score=47.99  Aligned_cols=191  Identities=10%  Similarity=0.081  Sum_probs=119.3

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  246 (430)
                      +.-++|..+.|+.-. ..++.+||+++...+....-.          ..|.-=.|. +  .+.|+..+ +..|+-|++..
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~----------e~VvfWkWi-s--~~~l~lVT-~taVyHWsi~~  134 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------DDVTFWKWI-S--LNTVALVT-DNAVYHWSMEG  134 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECS----------SCCCEEEEE-E--TTEEEEEC-SSEEEEEESSS
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecC----------CCceEEEec-C--CCeEEEEc-CCeeEEecccC
Confidence            456788888887765 669999999998888776553          234444564 3  34455443 56899999987


Q ss_pred             CCcceEEEeecC----CCeEEEEecCCCCEEEEEeC-------CCcEEEEEccCCeEEeeeeCC----------------
Q 014154          247 QRRPVMSFDFRE----TPIKAVAEEPDSFNIYIGNG-------SGDLASVDIRTGKLLGCFIGK----------------  299 (430)
Q Consensus       247 ~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~----------------  299 (430)
                      ...|+..+..|.    ..|..-..+++.++++..+-       .|.+.+|..+.+.. +.+.+|                
T Consensus       135 ~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F~~~~~~g~~~~~  213 (494)
T 1bpo_A          135 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEES  213 (494)
T ss_dssp             SCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEEEEEECTTCSSEE
T ss_pred             CCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeeeEEEecCCCCCCc
Confidence            667888888763    35666677888888875442       36677887654321 111111                


Q ss_pred             ---------------------C----------------------CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154          300 ---------------------C----------------------SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (430)
Q Consensus       300 ---------------------~----------------------~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  336 (430)
                                           +                      ..-..++..++....++.-+.-|.|++||+.++.++
T Consensus       214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i  293 (494)
T 1bpo_A          214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  293 (494)
T ss_dssp             EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence                                 0                      111233444455556777788899999999999999


Q ss_pred             eEEEeeccccceEEeeecc-ccccccccCCCCceEecCCCC
Q 014154          337 SAVFLKQHLNEVVFDSAFA-DKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       337 ~~~~~~~~~~~~v~~~~~s-~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      ..-.+.   ...|+..+.. ..+-++.....|.|.--..+.
T Consensus       294 ~~nrIs---~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          294 YMNRIS---GETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEECC---SSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             eeeccc---CCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            874332   2233433333 334445556667665554443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00069  Score=59.74  Aligned_cols=151  Identities=9%  Similarity=0.119  Sum_probs=88.3

Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEE-eCCCcEEEEECCCCCcce
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAG-TNDHQVRLYDTSAQRRPV  251 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~  251 (430)
                      +..+++++.||.|+.+|..+|+..+++.....        .++....-...+ ++..++.. +.||.|..++..++.. .
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~--------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-~   80 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENF--------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-K   80 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGS--------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-E
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCcc--------CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-E
Confidence            35788999999999999999999999876410        011111100011 23333333 5899999999887643 2


Q ss_pred             EEEee----cCCCeEE---EEe-c----CCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCC------eEEEEec---
Q 014154          252 MSFDF----RETPIKA---VAE-E----PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGS------IRSIARH---  310 (430)
Q Consensus       252 ~~~~~----~~~~i~~---~~~-s----p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------v~~i~~~---  310 (430)
                      ..+..    ...++..   ..+ .    -.+..+++|+.+|.+...|+++|+.+.++.......      ..|....   
T Consensus        81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~  160 (339)
T 2be1_A           81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIK  160 (339)
T ss_dssp             EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC----------------
T ss_pred             eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccc
Confidence            22221    1122221   001 0    135688999999999999999999999987531111      0011110   


Q ss_pred             --CCCCeEEEEeCCCcEEEEECCCCc
Q 014154          311 --PTLPIIASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       311 --~~~~~l~s~~~dg~i~iwd~~~~~  334 (430)
                        ..+..|+.+..+..+.+.+ ++|+
T Consensus       161 ~d~~~~~v~ig~~~y~v~~~~-~sG~  185 (339)
T 2be1_A          161 LQECENMIVIGKTIFELGIHS-YDGA  185 (339)
T ss_dssp             ----CCEEEEEEEEEECEECC-TTSC
T ss_pred             cccCCCeEEEecceEEEEEEC-CCCC
Confidence              1235677777777777777 4554

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.37  E-value=0.012  Score=51.38  Aligned_cols=158  Identities=8%  Similarity=0.005  Sum_probs=102.9

Q ss_pred             ceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceEEEee----cC--CCeEEEEe---cCCCCEEEEEe-------
Q 014154          215 WFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVMSFDF----RE--TPIKAVAE---EPDSFNIYIGN-------  277 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~----~~--~~i~~~~~---sp~~~~l~~~~-------  277 (430)
                      ...+++|  .+....|..++ ..++|..||...+......+..    ..  ..+..|.|   .|+++++++..       
T Consensus        14 yPE~~~w--d~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           14 TPEDTIY--DRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCSCEEE--ETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             CCcCccC--cCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            3567788  45444555545 7999999999754321112221    11  13578999   68887777644       


Q ss_pred             ------CCCcEEEEEcc---CCeEEeeeeC--C----------CCCCeEEEEecCCCCeEEEEeCC-CcEEEEECCCCce
Q 014154          278 ------GSGDLASVDIR---TGKLLGCFIG--K----------CSGSIRSIARHPTLPIIASCGLD-SYLRFWDIKTRQL  335 (430)
Q Consensus       278 ------~d~~i~iwd~~---~~~~~~~~~~--~----------~~~~v~~i~~~~~~~~l~s~~~d-g~i~iwd~~~~~~  335 (430)
                            .+..|..||+.   +++.+....-  .          .......++..++|+..++++.- +.|..++.. |+.
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd-G~~  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD-GKT  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-SCC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-CCE
Confidence                  26779999999   7877654431  1          01247899999999999988888 888877765 333


Q ss_pred             eeEEEeecc---ccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          336 LSAVFLKQH---LNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       336 ~~~~~~~~~---~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      +..+.+...   .....+.++++|+|.. ++....+.|..++..
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            433322211   1122468999999987 555459999998876

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.34  E-value=0.055  Score=48.07  Aligned_cols=201  Identities=7%  Similarity=0.010  Sum_probs=106.3

Q ss_pred             eEEEEEcCCCCEEEEE------------eCCCeEEEEECCCCe-eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EE
Q 014154          165 IAFSKVDISEKFSLFG------------GKGVEVNVWDLDKCE-KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF  230 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~------------~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l  230 (430)
                      ...+++.|+|..++++            ..+|.|.++|+.+.. ....+...... .. ...-....+.+....++. +|
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~-~~-~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNT-LD-ISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSS-CC-GGGCCEEEEEEEECTTCCEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCC-CC-cCceeeeeeEEEECCCCcEEE
Confidence            3455666665444433            268999999997421 11122111000 00 001245666664333443 44


Q ss_pred             EEEe-C--CCcEEEEECCCCCcc---eEEEeec-CCCeEEEEecCCCCEEEEEe-----------------CCCcEEEEE
Q 014154          231 VAGT-N--DHQVRLYDTSAQRRP---VMSFDFR-ETPIKAVAEEPDSFNIYIGN-----------------GSGDLASVD  286 (430)
Q Consensus       231 ~s~~-~--dg~i~iwd~~~~~~~---~~~~~~~-~~~i~~~~~sp~~~~l~~~~-----------------~d~~i~iwd  286 (430)
                      +++. .  +.+|.+|++......   +..+.+. -...+.+.+.++|.+.++..                 ..|.|..||
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            4443 2  457788777653322   2223322 23578899999998777654                 124555565


Q ss_pred             ccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCC-CceeeEEEeeccccceEEeeeccc-cccc-cc
Q 014154          287 IRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKT-RQLLSAVFLKQHLNEVVFDSAFAD-KEVA-NA  362 (430)
Q Consensus       287 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~s~-~g~~-~~  362 (430)
                      .  ++......+  -...+.++|+||++.|+.+. ..+.|..|++.. +.....-.+  ......-.++..+ +|.+ ++
T Consensus       210 ~--~~~~~~~~~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva  283 (355)
T 3sre_A          210 P--NDVRVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVG  283 (355)
T ss_dssp             T--TCCEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEE
T ss_pred             C--CeEEEeecC--CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEE
Confidence            5  333222222  34578999999998776664 568899999863 433221112  1133456778888 5887 43


Q ss_pred             cC-CCCceEecC
Q 014154          363 AA-DAPMLEIQN  373 (430)
Q Consensus       363 ~~-~d~~i~~~~  373 (430)
                      +. ..+.|..|+
T Consensus       284 ~~~~g~~v~~~~  295 (355)
T 3sre_A          284 CHPNGMRIFFYD  295 (355)
T ss_dssp             EESCHHHHHSCC
T ss_pred             ecCCceEEEEEC
Confidence            43 223444443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.32  E-value=0.002  Score=63.43  Aligned_cols=162  Identities=9%  Similarity=-0.118  Sum_probs=92.5

Q ss_pred             eEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC--CCcEEE
Q 014154          165 IAFSKVDISEKFSL-FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--DHQVRL  241 (430)
Q Consensus       165 i~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~i  241 (430)
                      ...|++++.+..|+ +-...+.|.++++........+....         .....+++  .|.+.+|+.+..  .+.|..
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~---------~~P~giav--Dp~~g~ly~td~~~~~~I~~  523 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQG---------SKPRAIVV--DPVHGFMYWTDWGTPAKIKK  523 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSS---------CCCCCEEC--CSSSSCCEECCCSSSCCEEB
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCC---------CCcceEEE--ccCCCcEEEcccCCCCeEEE
Confidence            45678876544444 44556789999987543332222111         33566777  665544444332  267888


Q ss_pred             EECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeC-CCCCCeEEEEecCCCCeEEEE
Q 014154          242 YDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIG-KCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       242 wd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      +++..... ...+...-.....|+|+|++..|+.+. ..+.|..+|+........+.. ........|++..+ .++++.
T Consensus       524 ~~~dG~~~-~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd  601 (699)
T 1n7d_A          524 GGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTD  601 (699)
T ss_dssp             CCSSSCCC-CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEEC
T ss_pred             EeCCCCCe-eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEe
Confidence            87764222 222222223457899999866665554 567899999864332222211 00223445666444 344555


Q ss_pred             eCCCcEEEEECCCCceeeEE
Q 014154          320 GLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       320 ~~dg~i~iwd~~~~~~~~~~  339 (430)
                      ...+.|..++..+++.+..+
T Consensus       602 ~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          602 IINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             STTTCEEEEETTTEEEEECC
T ss_pred             CCCCeEEEEEccCCCceEEe
Confidence            56788999998888877764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.32  E-value=0.11  Score=48.41  Aligned_cols=163  Identities=9%  Similarity=0.016  Sum_probs=89.8

Q ss_pred             ceEEEEEcCC-CCEEEEEeCCCeEEEEECC-------CCee-----------eEeeCCCCCCCCCCcCCcceeEEEEeec
Q 014154          164 TIAFSKVDIS-EKFSLFGGKGVEVNVWDLD-------KCEK-----------IWTAKPPPKNSLGIFTPTWFTSAAFLSI  224 (430)
Q Consensus       164 ~i~~~~~~~~-~~~l~~~~~d~~i~~~d~~-------~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~  224 (430)
                      ....++++|+ +.++++-..++.|+.+|+.       ++..           ...+..       .....+...++|  +
T Consensus       248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~-------~~~~~~p~~ia~--~  318 (496)
T 3kya_A          248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT-------IADPSWEFQIFI--H  318 (496)
T ss_dssp             CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE-------CSSSSCCEEEEE--C
T ss_pred             CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEe-------cCCCCCceEEEE--c
Confidence            4567888995 4545555677889999987       4433           111100       001145678999  8


Q ss_pred             CCCCEE-EEEeCCCcEEEEECCCCCcce---EEEeec---C------------CCeE-EEEec-------CCCCEEEEEe
Q 014154          225 DDHRKF-VAGTNDHQVRLYDTSAQRRPV---MSFDFR---E------------TPIK-AVAEE-------PDSFNIYIGN  277 (430)
Q Consensus       225 ~~~~~l-~s~~~dg~i~iwd~~~~~~~~---~~~~~~---~------------~~i~-~~~~s-------p~~~~l~~~~  277 (430)
                      |+++.| ++-+..+.|+.++.......+   ..+-+.   .            .... .++..       +++.++++=.
T Consensus       319 p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~  398 (496)
T 3kya_A          319 PTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDR  398 (496)
T ss_dssp             TTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEG
T ss_pred             CCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEEC
Confidence            999954 444567788886654311111   223221   0            1233 44454       4566666666


Q ss_pred             CCCcEEEEEccCCeEEeeeeCCC-----------------------CCCeEEEEecCC-CCeEEEEeCCCcEEEEECCCC
Q 014154          278 GSGDLASVDIRTGKLLGCFIGKC-----------------------SGSIRSIARHPT-LPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       278 ~d~~i~iwd~~~~~~~~~~~~~~-----------------------~~~v~~i~~~~~-~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      ..+.|+.++ .++.. .++.+..                       -.....|+++++ +.++++=..+..||.+++...
T Consensus       399 ~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          399 LNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             GGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             CCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence            778899998 46643 3443210                       023567777775 555555455667777776654


Q ss_pred             ceee
Q 014154          334 QLLS  337 (430)
Q Consensus       334 ~~~~  337 (430)
                      ..++
T Consensus       477 ~~~~  480 (496)
T 3kya_A          477 ENVA  480 (496)
T ss_dssp             C---
T ss_pred             cccc
Confidence            4443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.27  E-value=0.081  Score=47.66  Aligned_cols=147  Identities=8%  Similarity=-0.007  Sum_probs=94.1

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC---
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR---  248 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---  248 (430)
                      .++..++++- ++.||.-++......+.+.....-.+     ..+..+..  +|+|.+|+..+ +..|.|-.+..+.   
T Consensus        30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f-----~~i~qlvl--SpsG~lLAl~g-~~~V~Vv~LP~~~~~~  100 (452)
T 3pbp_A           30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVL-----DDTFHVIS--STSGDLLCLFN-DNEIFVMEVPWGYSNV  100 (452)
T ss_dssp             TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCC-----CTTCEEEE--CTTSSEEEEEC-SSEEEEEECCTTCSCC
T ss_pred             cCCCEEEEEE-CCEEEEEECCCCCcceEEecCccccc-----CceeEEEE--CCCCCEEEEec-CCeEEEEEecCccccC
Confidence            3566666544 35888888764433333333210000     24666777  89999999865 5688998887322   


Q ss_pred             ------cc--eEEEee------cCCCeEEEEecCCC---CEEEEEeCCCcEEEEEccCCe--EEeeeeCC--------CC
Q 014154          249 ------RP--VMSFDF------RETPIKAVAEEPDS---FNIYIGNGSGDLASVDIRTGK--LLGCFIGK--------CS  301 (430)
Q Consensus       249 ------~~--~~~~~~------~~~~i~~~~~sp~~---~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~--------~~  301 (430)
                            .+  ...+..      ...+|..+.|+|-+   ..|++-..|+.|++||+....  +. .+...        ..
T Consensus       101 ~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~  179 (452)
T 3pbp_A          101 EDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARV  179 (452)
T ss_dssp             CCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSC
T ss_pred             cccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCccc
Confidence                  01  123332      24679999999954   689999999999999998521  22 22211        12


Q ss_pred             CCeEEEEecCCCCeEEEEe--CCCcEEEE
Q 014154          302 GSIRSIARHPTLPIIASCG--LDSYLRFW  328 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~--~dg~i~iw  328 (430)
                      ..|.+++|.+++-.|...+  ..|.|+-.
T Consensus       180 ~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          180 NDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            5789999999887666655  77888755

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.24  E-value=0.0091  Score=55.51  Aligned_cols=155  Identities=8%  Similarity=0.014  Sum_probs=94.3

Q ss_pred             ceeEEEEeecC-C-CCEEEEEeCCCcEEEEECCCCCcceEEEeec----CCCeEEEEe-------cCCCCEEEEEeCCC-
Q 014154          215 WFTSAAFLSID-D-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFR----ETPIKAVAE-------EPDSFNIYIGNGSG-  280 (430)
Q Consensus       215 ~v~~~~~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~i~~~~~-------sp~~~~l~~~~~d~-  280 (430)
                      ....++|  .| + ++++++....+.|++.|+..+.  +..+-..    ......|+|       ++++.+|+++...+ 
T Consensus       140 ~p~~la~--dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          140 DNGRLAF--DPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             SEEEEEE--ETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             CCCEEEE--ccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            4667888  66 2 4444444445779999998743  3443322    124789999       99999777776554 


Q ss_pred             ------cEEEEEccC-CeEE-----eeeeCCCCCCeEEEEecCCC-CeEEEEeCCCcEEEEECC-------CCce-----
Q 014154          281 ------DLASVDIRT-GKLL-----GCFIGKCSGSIRSIARHPTL-PIIASCGLDSYLRFWDIK-------TRQL-----  335 (430)
Q Consensus       281 ------~i~iwd~~~-~~~~-----~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~iwd~~-------~~~~-----  335 (430)
                            .|.+++... +...     ..+..  -.....++++|++ .++++-..++.|+.+|+.       ++..     
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~--~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~  293 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIAA--YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV  293 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEEE--ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred             CcccCceEEEEecCCCCceeecccceeecc--CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccc
Confidence                  266666433 2221     12221  1234678899954 445556677889999997       5553     


Q ss_pred             ------eeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154          336 ------LSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND  376 (430)
Q Consensus       336 ------~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~  376 (430)
                            ...+...+. ....+.++|+|+|..  ++-.....|+.++.+.
T Consensus       294 ~~~~g~~~~l~~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg  341 (496)
T 3kya_A          294 KNNPNTFKQLFTIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE  341 (496)
T ss_dssp             GGCTTTEEEEEECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             cccccccceeEecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence                  222211111 233478999999983  6666777888865543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.23  E-value=0.17  Score=49.02  Aligned_cols=220  Identities=8%  Similarity=-0.019  Sum_probs=131.7

Q ss_pred             ccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCC
Q 014154          130 TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSL  208 (430)
Q Consensus       130 ~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~  208 (430)
                      +..+.+...++....        ...+..+..-..+..++|++.+..|+.+. .++.|..+++........+....    
T Consensus        12 s~~~~I~~i~l~~~~--------~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~----   79 (628)
T 4a0p_A           12 SRRADIRRISLETNN--------NNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGL----   79 (628)
T ss_dssp             EETTEEEEEESSCTT--------CEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC----
T ss_pred             EeCCcEEEEECCCCC--------cceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCC----
Confidence            456667666664221        11222222234678999999777776554 56889999887543322222211    


Q ss_pred             CCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC--CCcEEEE
Q 014154          209 GIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASV  285 (430)
Q Consensus       209 ~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iw  285 (430)
                           .....+++  .+. +++.++-...+.|.+.++..... ...+...-.....|++.|...+|+....  .+.|...
T Consensus        80 -----~~P~GlAv--D~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~  151 (628)
T 4a0p_A           80 -----DYPEGMAV--DWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRA  151 (628)
T ss_dssp             -----SCCCEEEE--ETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             -----CCcceEEE--EeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEE
Confidence                 33567777  544 44555555678899999976432 2222233356789999997666666652  5678888


Q ss_pred             EccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe-CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccC
Q 014154          286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAA  364 (430)
Q Consensus       286 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~  364 (430)
                      ++........+. . -.....|++++++..|+.+. ..+.|..+|+..... ..  +...... ..++++..+.-+++-.
T Consensus       152 ~~dG~~~~~l~~-~-~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v--~~~~l~~-P~glav~~~~ly~tD~  225 (628)
T 4a0p_A          152 AMDGSERTTLVP-N-VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV--IADDLPH-PFGLTQYQDYIYWTDW  225 (628)
T ss_dssp             ETTSCSCEEEEC-S-CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE--EEECCSC-EEEEEEETTEEEEEET
T ss_pred             eCCCCceEEEEC-C-CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE--eeccCCC-ceEEEEECCEEEEecC
Confidence            875443322232 2 45789999999877666664 567899999875443 22  2222233 3577776543335555


Q ss_pred             CCCceEecCCC
Q 014154          365 DAPMLEIQNGN  375 (430)
Q Consensus       365 ~d~~i~~~~~~  375 (430)
                      ..+.|...+..
T Consensus       226 ~~~~I~~~dk~  236 (628)
T 4a0p_A          226 SRRSIERANKT  236 (628)
T ss_dssp             TTTEEEEEETT
T ss_pred             CCCEEEEEECC
Confidence            66777777653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.18  E-value=0.058  Score=56.14  Aligned_cols=235  Identities=13%  Similarity=0.076  Sum_probs=128.8

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      +|..+.||.-. ..++.|+|+++...+..+...         ..   +.+|..-+       ...+.--.+..+..|++.
T Consensus        74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~---------e~---VvfWkWis-------~~~l~lVT~~aVyHW~~~  133 (1630)
T 1xi4_A           74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DD---VTFWKWIS-------LNTVALVTDNAVYHWSME  133 (1630)
T ss_pred             CCCcceEEEec-CCeEEEeehHHhhhhcccccC---------CC---ceEEEecC-------CCeeEEEcCCeEEEeccC
Confidence            66667777654 688999999877766665431         12   45565433       344444556678999885


Q ss_pred             ecCccccCCCcceEEeeecC---CCceEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154          142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  211 (430)
                      ..       ..++++|+...   +..|..-..+++.++++..|       -.|.+.+|..+.+.. ..+.+|......  
T Consensus       134 ~~-------s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~--  203 (1630)
T 1xi4_A          134 GE-------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQ--  203 (1630)
T ss_pred             CC-------CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhhe--
Confidence            32       23555555321   35577777788888877543       357888888865322 222333211110  


Q ss_pred             CCcceeEEEEeecCC-CCEEEEEeC---CCcEEEEECCCC---Ccc-----eEEEeec---CCCeEEEEecCCCCEEEEE
Q 014154          212 TPTWFTSAAFLSIDD-HRKFVAGTN---DHQVRLYDTSAQ---RRP-----VMSFDFR---ETPIKAVAEEPDSFNIYIG  276 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~-~~~l~s~~~---dg~i~iwd~~~~---~~~-----~~~~~~~---~~~i~~~~~sp~~~~l~~~  276 (430)
                             +.....+. ..+++.+..   .+.++|-++...   ..+     +..+...   ..-..++..++.-..++.-
T Consensus       204 -------~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i  276 (1630)
T 1xi4_A          204 -------FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (1630)
T ss_pred             -------eccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence                   01100011 112221111   268888887543   111     1111111   2233467777777888888


Q ss_pred             eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154          277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       277 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~  334 (430)
                      +.-|.|++||+.++.++..-+-. ..+|...+-+....-++.....|.|.-..+....
T Consensus       277 tk~G~~~~~d~~t~~~i~~~ris-~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          277 TKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             ecCceEEEEecccchhhhhcccc-CCceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence            99999999999999987654433 3445444443332233334455655555554433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.04  E-value=0.15  Score=44.92  Aligned_cols=191  Identities=9%  Similarity=-0.040  Sum_probs=99.5

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ..+..+.+++ + .++.++..+.|+. ..+.++.-........      .+..+..+.+  .+++..++. +.++.|.. 
T Consensus        80 ~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~------~~~~~~~i~~--~~~~~~~~~-~~~g~v~~-  146 (327)
T 2xbg_A           80 YRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQSWSQIPLDPK------LPGSPRLIKA--LGNGSAEMI-TNVGAIYR-  146 (327)
T ss_dssp             CEEEEEEEET-T-EEEEEEETTEEEE-ESSTTSSCEECCCCTT------CSSCEEEEEE--EETTEEEEE-ETTCCEEE-
T ss_pred             ccEEEEEecC-C-eEEEEECCCeEEE-ECCCCCCceECccccC------CCCCeEEEEE--ECCCCEEEE-eCCccEEE-
Confidence            3567778875 3 3444555664443 2332332111111100      1133566766  345555554 45665432 


Q ss_pred             ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc--cCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDI--RTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~--~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      ....+..-..........+..+.+.|++.+++++...+..+-.|-  .+-+.+.  ... ...+..+.+.+++.++ .++
T Consensus       147 S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~-~~~~~~~~~~~~g~~~-~~~  222 (327)
T 2xbg_A          147 TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTT-SRRLHNMGFTPDGRLW-MIV  222 (327)
T ss_dssp             ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCS-SSCEEEEEECTTSCEE-EEE
T ss_pred             EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCC-CCccceeEECCCCCEE-EEe
Confidence            122233222222334567899999999888776644433333442  2333332  122 5678899999998755 455


Q ss_pred             CCCcEEEEECCCCceeeEEEee-ccccceEEeeeccccccccccCCCCceE
Q 014154          321 LDSYLRFWDIKTRQLLSAVFLK-QHLNEVVFDSAFADKEVANAAADAPMLE  370 (430)
Q Consensus       321 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~~~~~~d~~i~  370 (430)
                      .+|.+++.+...++.-..+... -.....+.++++.+++.+++++.++.+.
T Consensus       223 ~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~  273 (327)
T 2xbg_A          223 NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL  273 (327)
T ss_dssp             TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE
T ss_pred             CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE
Confidence            6888877653334433322111 0111236788899888875555566663

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.03  E-value=0.045  Score=48.65  Aligned_cols=152  Identities=10%  Similarity=0.072  Sum_probs=89.0

Q ss_pred             eEEEEeecCCCCEEEEE------------eCCCcEEEEECCCCCcceEE--Eee-----cCCCeEEEEecC--CCC-EEE
Q 014154          217 TSAAFLSIDDHRKFVAG------------TNDHQVRLYDTSAQRRPVMS--FDF-----RETPIKAVAEEP--DSF-NIY  274 (430)
Q Consensus       217 ~~~~~~~~~~~~~l~s~------------~~dg~i~iwd~~~~~~~~~~--~~~-----~~~~i~~~~~sp--~~~-~l~  274 (430)
                      ..++.  .|+|..++++            ..+|.|.++|+.+.......  +.+     .......+.+.+  ++. +|+
T Consensus        53 EDi~~--~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~  130 (355)
T 3sre_A           53 EDLEI--LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  130 (355)
T ss_dssp             CEEEE--CTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             ceeEE--cCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence            44555  5666554444            26899999999843211222  222     123567777755  343 444


Q ss_pred             EE-eC--CCcEEEEEccCC--e--EEeeeeCCCCCCeEEEEecCCCCeEEEEeC-----------------CCcEEEEEC
Q 014154          275 IG-NG--SGDLASVDIRTG--K--LLGCFIGKCSGSIRSIARHPTLPIIASCGL-----------------DSYLRFWDI  330 (430)
Q Consensus       275 ~~-~~--d~~i~iwd~~~~--~--~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-----------------dg~i~iwd~  330 (430)
                      +. ..  +..|.+|++...  .  .+..+.+..-...+.+.+.++|.+.++...                 .|.|+-+|.
T Consensus       131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~  210 (355)
T 3sre_A          131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  210 (355)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred             EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence            44 33  467788776543  2  344455443456899999999988777641                 244555554


Q ss_pred             CCCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCC
Q 014154          331 KTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGND  376 (430)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~  376 (430)
                        ++. ..+ ..+ .. ..+.++|+||++.  ++-+..+.|..|+...
T Consensus       211 --~~~-~~~-~~~-l~-~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          211 --NDV-RVV-AEG-FD-FANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             --TCC-EEE-EEE-ES-SEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             --CeE-EEe-ecC-Cc-ccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence              332 221 222 12 2489999999976  5566678898888764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.02  E-value=0.32  Score=48.40  Aligned_cols=164  Identities=9%  Similarity=-0.104  Sum_probs=99.7

Q ss_pred             CceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CC-CcE
Q 014154          163 GTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-ND-HQV  239 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d-g~i  239 (430)
                      .....|++++.+..|+.+ ...+.|.+.++........+...         ......|++  .|....|+.+. .. +.|
T Consensus       471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~---------l~~P~gIaV--Dp~~g~LYwtD~g~~~~I  539 (791)
T 3m0c_C          471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN---------GSKPRAIVV--DPVHGFMYWTDWGTPAKI  539 (791)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT---------TCCEEEEEE--ETTTTEEEEEECSSSCEE
T ss_pred             CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCC---------CCCcceEEE--ecCCCCEEEecCCCCCeE
Confidence            456789998877655554 55778999998754332222211         144788899  66655555444 22 678


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~  317 (430)
                      ...++..... ...+...-.....|++++.+..|+.+. ..+.|..+++........+... .-....+|++..+ .+++
T Consensus       540 ~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYw  617 (791)
T 3m0c_C          540 KKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFW  617 (791)
T ss_dssp             EEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEE
T ss_pred             EEEecCCCce-EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEE
Confidence            8888875332 233333335688999998777777665 4567999998644333333321 0223456766332 3444


Q ss_pred             EEeCCCcEEEEECCCCceeeEE
Q 014154          318 SCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       318 s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      +-...+.|...|..+|+.+..+
T Consensus       618 tD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          618 TDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EETTTTEEEEEETTTCCCCEEE
T ss_pred             EECCCCEEEEEeCCCCcceEEe
Confidence            4456678888888777766554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.76  E-value=0.071  Score=48.02  Aligned_cols=128  Identities=15%  Similarity=0.142  Sum_probs=84.4

Q ss_pred             ceEEeeecC---CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee------------eEeeCCCCCCCCCCcCCccee
Q 014154          153 TVKSWNVCA---SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK------------IWTAKPPPKNSLGIFTPTWFT  217 (430)
Q Consensus       153 ~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------------~~~~~~~~~~~~~~~~~~~v~  217 (430)
                      .-+++....   -..|..+..+|+|++||..+.. .|.|..+..+..            .+.+....   ........|.
T Consensus        53 ~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~---~~~~~~s~I~  128 (452)
T 3pbp_A           53 LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE---EEVGPKSSIK  128 (452)
T ss_dssp             SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG---CC--CCCCEE
T ss_pred             cceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccccceeEEEcCC---cccCCCCcee
Confidence            556666652   2367889999999999988765 899988873221            11111110   0111236799


Q ss_pred             EEEEee-cCCCCEEEEEeCCCcEEEEECCC-CCcceEEEee---------cCCCeEEEEecCCCCEEEEEe--CCCcEEE
Q 014154          218 SAAFLS-IDDHRKFVAGTNDHQVRLYDTSA-QRRPVMSFDF---------RETPIKAVAEEPDSFNIYIGN--GSGDLAS  284 (430)
Q Consensus       218 ~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~---------~~~~i~~~~~sp~~~~l~~~~--~d~~i~i  284 (430)
                      .+.|+| ...+..|++-..|+.|++||+.. ...|. .++.         ....|.+++|.+++-.|++.+  ..|.|+-
T Consensus       129 qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          129 KVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             EEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            999942 11356899999999999999985 23344 3321         225788999999888888766  7788765


Q ss_pred             E
Q 014154          285 V  285 (430)
Q Consensus       285 w  285 (430)
                      .
T Consensus       208 l  208 (452)
T 3pbp_A          208 F  208 (452)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.58  E-value=0.16  Score=44.00  Aligned_cols=146  Identities=16%  Similarity=0.165  Sum_probs=76.8

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCe---eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-----CcE
Q 014154          173 SEKFSLFGGKG-----VEVNVWDLDKCE---KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQV  239 (430)
Q Consensus       173 ~~~~l~~~~~d-----~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i  239 (430)
                      ++.+++.|+.+     ..+.+||+.+..   -... .....       +..-.+++.   .++.+++.|+.+     ..+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~-~~~p~-------~r~~~~~~~---~~~~lyv~GG~~~~~~~~~~  130 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSV-APMNV-------RRGLAGATT---LGDMIYVSGGFDGSRRHTSM  130 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEE-CCCSS-------CCBSCEEEE---ETTEEEEECCBCSSCBCCEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEEC-CCCCC-------CccceeEEE---ECCEEEEEcccCCCcccceE
Confidence            44555566643     468899987755   2211 11110       011112222   156777777644     358


Q ss_pred             EEEECCCCCcceEEEee-c--CCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEee--eeCCCCCCeEEEEe
Q 014154          240 RLYDTSAQRRPVMSFDF-R--ETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIAR  309 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~-~--~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~  309 (430)
                      .+||+.+..  ...+.. .  .....++.  .++++++.|+.+     ..+.+||+.+.+-...  +... ......+.+
T Consensus       131 ~~~d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~  205 (301)
T 2vpj_A          131 ERYDPNIDQ--WSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK-RSGAGVALL  205 (301)
T ss_dssp             EEEETTTTE--EEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE
T ss_pred             EEEcCCCCe--EEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcc-cccceEEEE
Confidence            899988643  222221 1  11112222  256677777654     4689999988764322  2211 112223333


Q ss_pred             cCCCCeEEEEeCC-----CcEEEEECCCCcee
Q 014154          310 HPTLPIIASCGLD-----SYLRFWDIKTRQLL  336 (430)
Q Consensus       310 ~~~~~~l~s~~~d-----g~i~iwd~~~~~~~  336 (430)
                        ++.+++.|+.+     ..+.+||+.+.+-.
T Consensus       206 --~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          206 --NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             --TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             --CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence              56777777754     46899999876544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.50  E-value=0.11  Score=45.72  Aligned_cols=202  Identities=10%  Similarity=0.062  Sum_probs=101.0

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE--ccCCeeEEEEeeec
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--TTKGKASMRSIEVT  143 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~v~~~~~~  143 (430)
                      .++++++.||.|.-.|..+|+.+..++.- .      ..++....  ....    ...+.++..  +.+|.+..++..  
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~------~~p~~~~~--~~~~----~~~~~~~vv~p~~dG~l~a~~~~--   75 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPE-N------FQPLIEIQ--EPSR----LETYETLIIEPFGDGNIYYFNAH--   75 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGG-G------SCCSEECC--CSCT----TTSSEEEEECCSTTTEEEEEETT--
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCC-c------cCCcEEec--CCcc----ccCCcEEEEEECCCCEEEEEECC--
Confidence            46889999999999999999988887652 0      00111100  0000    000123222  456666555532  


Q ss_pred             CccccCCCcceEEeeecCCCceEE--EEEc-----------CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCC
Q 014154          144 KVSAESSCSTVKSWNVCASGTIAF--SKVD-----------ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGI  210 (430)
Q Consensus       144 ~~~~~~~~~~i~~~~~~~~~~i~~--~~~~-----------~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~  210 (430)
                             +| ...|.......+..  +...           ..+..+++|+.+|.+...|+.+|+.++++........  
T Consensus        76 -------~G-~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~--  145 (339)
T 2be1_A           76 -------QG-LQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGY--  145 (339)
T ss_dssp             -------TE-EEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---
T ss_pred             -------CC-cEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccc--
Confidence                   12 22343321111100  1110           1466888999999999999999999999875431100  


Q ss_pred             cCCcceeEEE---EeecCCCCEEEEEeCCCcEEEEECCCCCcceEE---EeecCCC--e-EEEEecCCCCEEEEEeCCCc
Q 014154          211 FTPTWFTSAA---FLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS---FDFRETP--I-KAVAEEPDSFNIYIGNGSGD  281 (430)
Q Consensus       211 ~~~~~v~~~~---~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~~--i-~~~~~sp~~~~l~~~~~d~~  281 (430)
                      .......|..   +.....+..|+.+..+..+.+.+ ++++.-...   .......  + .+-..+.++.+ +.++.||.
T Consensus       146 ~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~  223 (339)
T 2be1_A          146 FGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKS  223 (339)
T ss_dssp             -------------------CCEEEEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTE
T ss_pred             ccccccccccccccccccCCCeEEEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCE
Confidence            0000000001   00001234666666666666666 333210011   1111000  0 00001234656 55789999


Q ss_pred             EEEEEccCCeEEe
Q 014154          282 LASVDIRTGKLLG  294 (430)
Q Consensus       282 i~iwd~~~~~~~~  294 (430)
                      |..+|..+|+.+.
T Consensus       224 v~A~d~~~G~~~W  236 (339)
T 2be1_A          224 LLASDLDFRIARW  236 (339)
T ss_dssp             EEEECSTTCCEEE
T ss_pred             EEEEECCCCcEEE
Confidence            9999999998876

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.41  E-value=0.055  Score=48.31  Aligned_cols=140  Identities=17%  Similarity=0.111  Sum_probs=79.3

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe---ecCCCeEEEEecCC---CCEEEEEeC----C----
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD---FRETPIKAVAEEPD---SFNIYIGNG----S----  279 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~i~~~~~sp~---~~~l~~~~~----d----  279 (430)
                      .....++|  .|++++++ +..+|.|+++|.. +...+..+.   ........|+++|+   +..|+++..    +    
T Consensus        29 ~~P~~ia~--~pdG~l~V-~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           29 EVPWSIAP--LGGGRYLV-TERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             SCEEEEEE--EETTEEEE-EETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCeEEEE--cCCCeEEE-EeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            44678899  67887555 4667999999743 332222221   12356889999998   556655543    2    


Q ss_pred             CcEEEEEccCC-------eEE-eeeeCCCCCCeEEEEecCCCCeEEEEeC-------------CCcEEEEECCCCce---
Q 014154          280 GDLASVDIRTG-------KLL-GCFIGKCSGSIRSIARHPTLPIIASCGL-------------DSYLRFWDIKTRQL---  335 (430)
Q Consensus       280 ~~i~iwd~~~~-------~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~-------------dg~i~iwd~~~~~~---  335 (430)
                      +.|..|+....       +.+ ..+..........|.|.|+|.++++.+.             .|.|.-++.. ++.   
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~  183 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPAD  183 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTT
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCC
Confidence            56777877644       111 1232211123467999999986666443             2455555553 221   


Q ss_pred             ----eeEEEeeccccceEEeeeccc-cccc
Q 014154          336 ----LSAVFLKQHLNEVVFDSAFAD-KEVA  360 (430)
Q Consensus       336 ----~~~~~~~~~~~~~v~~~~~s~-~g~~  360 (430)
                          -..+...++ .. ...++|+| +|.+
T Consensus       184 npf~~~~i~a~G~-rn-p~Gla~d~~~g~l  211 (354)
T 3a9g_A          184 NPFPNSPIWSYGH-RN-PQGIDWHRASGVM  211 (354)
T ss_dssp             SSSTTCCEEEECC-SC-CCEEEECTTTCCE
T ss_pred             CCCCCCcEEEEcc-CC-cceEEEeCCCCCE
Confidence                001112233 22 26889999 6776

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.33  E-value=0.22  Score=43.06  Aligned_cols=146  Identities=13%  Similarity=0.086  Sum_probs=76.3

Q ss_pred             CCCEEEEEeCC-----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-----cEEEE
Q 014154          173 SEKFSLFGGKG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-----QVRLY  242 (430)
Q Consensus       173 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iw  242 (430)
                      ++.+++.|+.+     ..+.+||..+.+-...-.... .  .    .....+.+    ++.+++.|+.++     .+.+|
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~--r----~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~  129 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD-R--R----STLGAAVL----NGLLYAVGGFDGSTGLSSVEAY  129 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS-C--C----BSCEEEEE----TTEEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc-c--c----cceEEEEE----CCEEEEEcCCCCCccCceEEEE
Confidence            45555666643     358889987765332211111 0  0    11122223    567777777653     57788


Q ss_pred             ECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCC-------CcEEEEEccCCeEEee--eeCCCCCCeEEEEec
Q 014154          243 DTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-------GDLASVDIRTGKLLGC--FIGKCSGSIRSIARH  310 (430)
Q Consensus       243 d~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-------~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~  310 (430)
                      |+.+..  ...+..   ......++.  -++++++.|+.+       ..+.+||+.+.+-...  +... ......+.+ 
T Consensus       130 d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~-  203 (302)
T 2xn4_A          130 NIKSNE--WFHVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVGVL-  203 (302)
T ss_dssp             ETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE-
T ss_pred             eCCCCe--EeecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc-cccccEEEE-
Confidence            988643  222221   111112222  256666666542       4588999987764322  2221 112223333 


Q ss_pred             CCCCeEEEEeCC-----CcEEEEECCCCcee
Q 014154          311 PTLPIIASCGLD-----SYLRFWDIKTRQLL  336 (430)
Q Consensus       311 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~  336 (430)
                       ++.+++.|+.+     ..+.+||+.+.+-.
T Consensus       204 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  233 (302)
T 2xn4_A          204 -NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR  233 (302)
T ss_dssp             -TTEEEEECCBSSSSBCCCEEEEETTTTEEE
T ss_pred             -CCEEEEECCCCCCcccceEEEEeCCCCCEe
Confidence             66777777754     36899999876543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.32  E-value=0.84  Score=44.08  Aligned_cols=162  Identities=6%  Similarity=-0.126  Sum_probs=95.2

Q ss_pred             CceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC--CCcE
Q 014154          163 GTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN--DHQV  239 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i  239 (430)
                      .....+++++.+..|+.+ ...+.|.+.+++.......+...-         .....+++  .|.+..|+.+..  .+.|
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l---------~~P~~Iav--dp~~g~ly~tD~g~~~~I  152 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL---------DQPRAIAL--DPSSGFMYWTDWGEVPKI  152 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC---------SCCCCEEE--ETTTTEEEEEECSSSCEE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCC---------CCCceEEE--ecCCCeEEEeccCCCCEE
Confidence            467889999866655554 557889999987543322221111         34677888  665444544442  4577


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s  318 (430)
                      ...++.... ........-.....|++++++..|+.+. ..+.|..+|+..........+. .....+|++..+ .++++
T Consensus       153 ~r~~~dG~~-~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~gi~~~~~-~ly~t  229 (619)
T 3s94_A          153 ERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFED-ILYWT  229 (619)
T ss_dssp             EEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSS-EEEEE
T ss_pred             EEEECCCCc-eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-CCCceEEEEeCC-EEEEe
Confidence            777776432 2223322334678999999776666654 4578999998654433222222 223456777555 33444


Q ss_pred             EeCCCcEEEEECCCCceeeE
Q 014154          319 CGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       319 ~~~dg~i~iwd~~~~~~~~~  338 (430)
                      -...+.|...|..+++....
T Consensus       230 d~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          230 DWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             CTTTCSEEEEESSSCCCCEE
T ss_pred             cCCCCEEEEEECCCCcccEE
Confidence            44667899999888765443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.24  E-value=0.11  Score=46.21  Aligned_cols=102  Identities=16%  Similarity=0.142  Sum_probs=61.7

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc-ceEEEe---ecCCCeEEEEecCC---CCEEEEEeCC------C
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFD---FRETPIKAVAEEPD---SFNIYIGNGS------G  280 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~---~~~~~i~~~~~sp~---~~~l~~~~~d------~  280 (430)
                      .....++|  .|++.++++ ..+|.|.+++  .+.. .+..+.   ........|+|+|+   +..|+++...      +
T Consensus        31 ~~P~~ia~--~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           31 EVPWALAF--LPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             SCEEEEEE--CTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCceEEEE--cCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            34678899  789985554 6679999998  3221 122111   12356789999998   5566555432      6


Q ss_pred             cEEEEEccCCe-----EE-eeeeC--CCCCCeEEEEecCCCCeEEEEe
Q 014154          281 DLASVDIRTGK-----LL-GCFIG--KCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       281 ~i~iwd~~~~~-----~~-~~~~~--~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      .|..|+...+.     .+ ..+..  ........++|.|+|.+.++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            78888876432     12 22331  1012346899999997666543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.21  E-value=0.4  Score=44.36  Aligned_cols=106  Identities=11%  Similarity=0.041  Sum_probs=62.1

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc-ceEEEee------cCCCeEEEEecCC---CCEEEEEeC-----
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR-PVMSFDF------RETPIKAVAEEPD---SFNIYIGNG-----  278 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~------~~~~i~~~~~sp~---~~~l~~~~~-----  278 (430)
                      .....++|  .|+++++++-...+.|++++..++.. .+..+..      ....+..|+|+|+   +.+|++...     
T Consensus        27 ~~P~~~a~--~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLW--GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEE--cCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            34678999  78998777644445788888754432 1222211      2356779999996   556655542     


Q ss_pred             --------CCcEEEEEccCC-------eEEe-eeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154          279 --------SGDLASVDIRTG-------KLLG-CFIGKCSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       279 --------d~~i~iwd~~~~-------~~~~-~~~~~~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                              ...|.-|++...       +.+. .+..........|+|.|+|.+.++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                    235666665432       1122 122211235789999999987776553

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.19  E-value=0.63  Score=41.36  Aligned_cols=60  Identities=12%  Similarity=0.086  Sum_probs=37.8

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe----E--EeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK----L--LGCFIGKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~----~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      .....++| .++.++++....+.|...++....    .  ...+... ...+..+++.|||.++++..
T Consensus       268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-FGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-SCCEEEEEECTTSCEEEEEC
T ss_pred             CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-CCCeeEEEECCCCcEEEEEe
Confidence            35567777 467666666566778877775332    1  1222222 45789999999997666653

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.11  E-value=1.1  Score=43.32  Aligned_cols=197  Identities=8%  Similarity=0.003  Sum_probs=112.4

Q ss_pred             CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC-CCCEEEEEeCCCcEE
Q 014154          163 GTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID-DHRKFVAGTNDHQVR  240 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~i~  240 (430)
                      ..+..++|++.+..|+.+. ..+.|+.++++.......+...         ...+..+++  .+ .+++.++-+..+.|.
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~---------~~~p~GlAv--D~~~~~lY~tD~~~~~I~  417 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ---------IAHPDGIAV--DWVARNLYWTDTGTDRIE  417 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------CSCCCEEEE--ETTTTEEEEEETTTTEEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECC---------CCCcCceEE--ecccCcEEEEeCCCCcEE
Confidence            3467888988666666554 4678888888653322222211         134667888  54 455566656678999


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC--CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEE
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG--SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIAS  318 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s  318 (430)
                      +.++..... ...+...-....+|++.|...+|+....  ...|...++. |.....+....-...+.|++++++..|+.
T Consensus       418 v~~~~G~~~-~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~  495 (619)
T 3s94_A          418 VTRLNGTMR-KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYW  495 (619)
T ss_dssp             EEETTSCSC-EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEE
T ss_pred             EEeCCCCeE-EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEE
Confidence            999986432 2222223356789999997556655542  3567777764 33222232211457789999987777766


Q ss_pred             Ee-CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          319 CG-LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       319 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      +. ..+.|..+++.... ...+ +.+..... .+++...+.-+.+-...+.|...+..
T Consensus       496 aD~~~~~I~~~~~dG~~-~~~~-~~~~l~~P-~glav~~~~ly~tD~~~~~I~~~~k~  550 (619)
T 3s94_A          496 GDAKTDKIEVMNTDGTG-RRVL-VEDKIPHI-FGFTLLGDYVYWTDWQRRSIERVHKR  550 (619)
T ss_dssp             EETTTTEEEEEESSSCC-CEEE-EECCCCSS-CCEEEETTEEEEECTTSSCEEEEESS
T ss_pred             EECCCCEEEEEecCCCc-eEEE-eccCCCCc-EEEEEECCEEEEeecCCCeEEEEEcC
Confidence            64 45678889886433 3332 22222222 44555444222444444555544443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.10  E-value=0.33  Score=42.07  Aligned_cols=145  Identities=14%  Similarity=0.173  Sum_probs=76.1

Q ss_pred             CCCEEEEEeCC----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC------CcEEEE
Q 014154          173 SEKFSLFGGKG----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND------HQVRLY  242 (430)
Q Consensus       173 ~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iw  242 (430)
                      ++.+++.|+.+    ..+.+||+.+.+-..........       .....+.+    ++.+++.|+.+      ..+.+|
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~  123 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR-------DSLAACAA----EGKIYTSGGSEVGNSALYLFECY  123 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC-------BSCEEEEE----TTEEEEECCBBTTBSCCCCEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc-------cceeEEEE----CCEEEEECCCCCCCcEeeeEEEE
Confidence            44555666643    57888998876533221111100       11122223    56777777765      458899


Q ss_pred             ECCCCCcceEEEee-c--CCCeEEEEecCCCCEEEEEeC---------CCcEEEEEccCCeEEee--eeCCCCCCeEEEE
Q 014154          243 DTSAQRRPVMSFDF-R--ETPIKAVAEEPDSFNIYIGNG---------SGDLASVDIRTGKLLGC--FIGKCSGSIRSIA  308 (430)
Q Consensus       243 d~~~~~~~~~~~~~-~--~~~i~~~~~sp~~~~l~~~~~---------d~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~  308 (430)
                      |+.+..  ...+.. .  .....++.  -++++++.|+.         -..+.+||+.+.+-...  +... ...-..+.
T Consensus       124 d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~  198 (306)
T 3ii7_A          124 DTRTES--WHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA-RKNHGLVF  198 (306)
T ss_dssp             ETTTTE--EEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEE
T ss_pred             eCCCCc--eEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch-hhcceEEE
Confidence            988743  222221 1  11112222  25666666653         34588999988754322  2111 11122233


Q ss_pred             ecCCCCeEEEEeCC-----CcEEEEECCCCce
Q 014154          309 RHPTLPIIASCGLD-----SYLRFWDIKTRQL  335 (430)
Q Consensus       309 ~~~~~~~l~s~~~d-----g~i~iwd~~~~~~  335 (430)
                      +  ++.+++.|+.+     ..+.+||+.+.+-
T Consensus       199 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  228 (306)
T 3ii7_A          199 V--KDKIFAVGGQNGLGGLDNVEYYDIKLNEW  228 (306)
T ss_dssp             E--TTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred             E--CCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence            3  66677777654     3588999987653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.08  E-value=0.26  Score=51.46  Aligned_cols=107  Identities=12%  Similarity=0.135  Sum_probs=69.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  246 (430)
                      +.-++|..+.|+.-. ..++.+||+++...+....-.          ..|.-=.|. ++  +.|+..+ +..|.-|++..
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~----------e~VvfWkWi-s~--~~l~lVT-~~aVyHW~~~~  134 (1630)
T 1xi4_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------DDVTFWKWI-SL--NTVALVT-DNAVYHWSMEG  134 (1630)
T ss_pred             hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccC----------CCceEEEec-CC--CeeEEEc-CCeEEEeccCC
Confidence            345688888777665 678999999987776655443          234444564 33  3444433 55899999976


Q ss_pred             CCcceEEEeec----CCCeEEEEecCCCCEEEEEe-------CCCcEEEEEcc
Q 014154          247 QRRPVMSFDFR----ETPIKAVAEEPDSFNIYIGN-------GSGDLASVDIR  288 (430)
Q Consensus       247 ~~~~~~~~~~~----~~~i~~~~~sp~~~~l~~~~-------~d~~i~iwd~~  288 (430)
                      ...|+..+..|    ...|..-..+++.++++..+       -.|.+.+|...
T Consensus       135 ~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e  187 (1630)
T 1xi4_A          135 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD  187 (1630)
T ss_pred             CCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence            55666666655    34566666788888877543       23677788764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.07  E-value=0.47  Score=40.92  Aligned_cols=185  Identities=14%  Similarity=0.072  Sum_probs=91.0

Q ss_pred             CCCEEEEEe-CC-----CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-----CcEEE
Q 014154          173 SEKFSLFGG-KG-----VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-----HQVRL  241 (430)
Q Consensus       173 ~~~~l~~~~-~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~i  241 (430)
                      ++.+++.|+ .+     ..+.+||+.+.+-.. +......  .    .....+.+    ++.+++.|+.+     ..+.+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~--r----~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~   82 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRK--R----RYVASVSL----HDRIYVIGGYDGRSRLSSVEC   82 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSC--C----BSCEEEEE----TTEEEEECCBCSSCBCCCEEE
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChh--h----ccccEEEE----CCEEEEEcCCCCCccCceEEE
Confidence            344555666 32     368899988764322 1111100  0    11122222    56777777755     46889


Q ss_pred             EECCCCCcc-eEEEe---ecCCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEe--eeeCCCCCCeEEEEec
Q 014154          242 YDTSAQRRP-VMSFD---FRETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIARH  310 (430)
Q Consensus       242 wd~~~~~~~-~~~~~---~~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~  310 (430)
                      ||+.+.... ...+.   .......++.+  ++.+++.|+.+     ..+.+||+.+.+-..  .+... ......+.+ 
T Consensus        83 ~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~-  158 (301)
T 2vpj_A           83 LDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA-REGAGLVVA-  158 (301)
T ss_dssp             EETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSC-CBSCEEEEE-
T ss_pred             EECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCC-cccceEEEE-
Confidence            998875400 11221   11111222222  56677777643     468899998776432  22221 112222233 


Q ss_pred             CCCCeEEEEeCC-----CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC-----CceEecCCCC
Q 014154          311 PTLPIIASCGLD-----SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA-----PMLEIQNGND  376 (430)
Q Consensus       311 ~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d-----~~i~~~~~~~  376 (430)
                       ++.+++.|+.+     ..+.+||+.+.+-...-.+..... ....+.  -++.+ +.|+.+     ..+.+|+...
T Consensus       159 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~  231 (301)
T 2vpj_A          159 -SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRS-GAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRT  231 (301)
T ss_dssp             -TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             -CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccc-cceEEE--ECCEEEEEeCCCCCcccceEEEEeCCC
Confidence             66777777654     458899988765433211111111 101111  24555 777654     3466666544

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.79  E-value=0.8  Score=39.56  Aligned_cols=144  Identities=12%  Similarity=0.016  Sum_probs=75.7

Q ss_pred             CEEEEEeC--CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----CcEEEEECCCCC
Q 014154          175 KFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQVRLYDTSAQR  248 (430)
Q Consensus       175 ~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~  248 (430)
                      .+++.|+.  ...+.+||..+.+-... ......  .    .....+.+    ++.+++.|+.+    ..+.+||+.+..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~-~~~p~~--r----~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~d~~~~~   81 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDI-RCPFEK--R----RDAACVFW----DNVVYILGGSQLFPIKRMDCYNVVKDS   81 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEEC-CCCSCC--C----BSCEEEEE----TTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecC-CCCCcc--c----ceeEEEEE----CCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence            34555554  35789999987653321 111100  0    11122223    56677777755    568889988743


Q ss_pred             cceEEEee-c--CCCeEEEEecCCCCEEEEEeCC------CcEEEEEccCCeEEee--eeCCCCCCeEEEEecCCCCeEE
Q 014154          249 RPVMSFDF-R--ETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       249 ~~~~~~~~-~--~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                        ...+.. .  ......+.+  ++.+++.|+.+      ..+.+||+.+.+-...  +... ......+.+  ++.+++
T Consensus        82 --W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv  154 (306)
T 3ii7_A           82 --WYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ-RCSHGMVEA--NGLIYV  154 (306)
T ss_dssp             --EEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE--TTEEEE
T ss_pred             --EEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC-cceeEEEEE--CCEEEE
Confidence              222221 1  111122222  56677777755      4689999988764322  2211 111222223  666667


Q ss_pred             EEeC---------CCcEEEEECCCCcee
Q 014154          318 SCGL---------DSYLRFWDIKTRQLL  336 (430)
Q Consensus       318 s~~~---------dg~i~iwd~~~~~~~  336 (430)
                      .|+.         -..+.+||+.+.+-.
T Consensus       155 ~GG~~~~~~~~~~~~~~~~yd~~~~~W~  182 (306)
T 3ii7_A          155 CGGSLGNNVSGRVLNSCEVYDPATETWT  182 (306)
T ss_dssp             ECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred             ECCCCCCCCcccccceEEEeCCCCCeEE
Confidence            6653         345889999876543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.60  E-value=0.74  Score=37.48  Aligned_cols=143  Identities=5%  Similarity=-0.085  Sum_probs=78.6

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg  237 (430)
                      .+..++|+|++.+.++  .+|.++-.+..++..      -..+-..     +.   ....++.|  .+++.+.++  .||
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-----Gw---~~F~a~~f--D~~G~LYav--~dG  107 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-----GW---NQFQFLFF--DPNGYLYAV--SKD  107 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-----CG---GGCSEEEE--CTTSCEEEE--ETT
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-----cc---ccceEEEE--CCCCCEEEe--CCC
Confidence            5679999998886665  777777766644211      0111000     00   11366777  889987777  569


Q ss_pred             cEEEEECCCCCcc------eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCe------EEeeee-CCCCCCe
Q 014154          238 QVRLYDTSAQRRP------VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK------LLGCFI-GKCSGSI  304 (430)
Q Consensus       238 ~i~iwd~~~~~~~------~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~------~~~~~~-~~~~~~v  304 (430)
                      .|+-++..+...-      ...-...=..+..|.+.|+|.+.++.  |+.++-....++.      ....+- .. -..-
T Consensus       108 ~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g-~~~y  184 (236)
T 1tl2_A          108 KLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGG-WDTF  184 (236)
T ss_dssp             EEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSS-GGGE
T ss_pred             EEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCC-cceE
Confidence            9988876432210      11111111467999999999766665  7775443322111      011111 11 2234


Q ss_pred             EEEEecCCCCeEEEEeCCCcE
Q 014154          305 RSIARHPTLPIIASCGLDSYL  325 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~~dg~i  325 (430)
                      .-+.|.+++.+.+..  ++.+
T Consensus       185 r~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          185 KFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EEEEECTTSCEEEEE--TTEE
T ss_pred             EEEEECCCCcEEEEe--CCeE
Confidence            456688888766555  6633

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.56  E-value=1.2  Score=39.42  Aligned_cols=149  Identities=11%  Similarity=-0.003  Sum_probs=80.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC----CCEEEEEe--CC
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD----HRKFVAGT--ND  236 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~--~d  236 (430)
                      .....|+|.|++.++++--..|.|++++...+...........   ..........++|  +|+    +.+.++-+  .+
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v---~~~g~~GllGia~--~Pdf~~~g~lYv~yt~~~~  106 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGV---SPSGEGGLLGIAL--SPDYASDHMVYAYFTSASD  106 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTC---CCBTTBSEEEEEE--CTTHHHHCEEEEEEECSSS
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCce---eecCCCCceeeEe--ccccccCCEEEEEEecCCC
Confidence            4567899999998777665589999998765543211111100   0011245788999  674    43333322  34


Q ss_pred             CcEEEEECCCCC-------cceE---EEee-cCCCeEEEEecCCCCEEEEEeC-------------CCcEEEEEccCCe-
Q 014154          237 HQVRLYDTSAQR-------RPVM---SFDF-RETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIRTGK-  291 (430)
Q Consensus       237 g~i~iwd~~~~~-------~~~~---~~~~-~~~~i~~~~~sp~~~~l~~~~~-------------d~~i~iwd~~~~~-  291 (430)
                      +.|.-|.+....       ....   .+.. .......|.|.|||.+.++.+.             .|.|.-++....- 
T Consensus       107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip  186 (347)
T 3das_A          107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA  186 (347)
T ss_dssp             EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred             CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence            566666655411       1111   2221 1123467999999976666432             2455555543210 


Q ss_pred             ------EEeeee-CCCCCCeEEEEecCCCCeEEE
Q 014154          292 ------LLGCFI-GKCSGSIRSIARHPTLPIIAS  318 (430)
Q Consensus       292 ------~~~~~~-~~~~~~v~~i~~~~~~~~l~s  318 (430)
                            ....+. ++  .....++|+|+|.+.++
T Consensus       187 ~~nPf~~~~i~a~G~--RNp~Gla~dp~G~L~~~  218 (347)
T 3das_A          187 PGNPFPGSPVYSYGH--RNVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             TTCSSTTCCEEEBCC--SBCCEEEECTTCCEEEE
T ss_pred             CCCCCCCCeEEeeCC--CCcceEEECCCCCEEEE
Confidence                  001122 33  24578999998765544

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=95.55  E-value=1.2  Score=39.56  Aligned_cols=61  Identities=13%  Similarity=0.094  Sum_probs=40.4

Q ss_pred             CCeEEEEec-------CCCCEEEEEeCCCcEEEEEccCC-eEE--eeee-CCCCCCeEEEEecCCCCeEEEEe
Q 014154          259 TPIKAVAEE-------PDSFNIYIGNGSGDLASVDIRTG-KLL--GCFI-GKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       259 ~~i~~~~~s-------p~~~~l~~~~~d~~i~iwd~~~~-~~~--~~~~-~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      .....++|.       .++.++++....+.|...++... +..  ..+. +. ...+..+++.|||.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCcEEEEEe
Confidence            467788883       56777776666778888888743 332  2332 22 45788999999997666553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.44  E-value=2  Score=41.48  Aligned_cols=232  Identities=8%  Similarity=-0.092  Sum_probs=129.1

Q ss_pred             eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  146 (430)
                      +|+.+ ....|+..++........+..       +.-....++.+-....       ..+++-...+.+..+++....  
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~-------~~~~~~~~l~~d~~~~-------~lywtD~~~~~I~r~~~~g~~--   70 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPL-------TGVKEASALDFDVTDN-------RIYWTDISLKTISRAFMNGSA--   70 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCC-------CSCSCEEEEEEETTTT-------EEEEEETTTTEEEEEETTSCS--
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEc-------CCCCceEEEEEECCCC-------EEEEEECCCCeEEEEECCCCC--
Confidence            44444 457899999875442221110       0112444555543332       234444455555555432111  


Q ss_pred             ccCCCcceEEeeecCCCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          147 AESSCSTVKSWNVCASGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       147 ~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                            ...+.. ........+++++.+..|+.+ ...+.|.+.+++.......+...         ......+++  .|
T Consensus        71 ------~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~---------l~~P~~iav--dp  132 (628)
T 4a0p_A           71 ------LEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD---------LDSPRALAL--DP  132 (628)
T ss_dssp             ------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSS---------CCCEEEEEE--ET
T ss_pred             ------cEEEEe-CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCC---------CCCcccEEE--cc
Confidence                  112222 112456788998766655554 45678999998654322212111         144688899  66


Q ss_pred             CCCEEEEEe--CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeeeCCCCC
Q 014154          226 DHRKFVAGT--NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFIGKCSG  302 (430)
Q Consensus       226 ~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~  302 (430)
                      ....|+.+.  ..+.|...++....  ...+-..-.....|++++++..|+.+. ..+.|..+|+..... ..+... ..
T Consensus       133 ~~G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~-l~  208 (628)
T 4a0p_A          133 AEGFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD-LP  208 (628)
T ss_dssp             TTTEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC-CS
T ss_pred             CCCeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc-CC
Confidence            444454444  25678888887533  223223345678999999877776665 457899999865433 233332 34


Q ss_pred             CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154          303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      ...++++.. +.++++-...+.|...|..+++....
T Consensus       209 ~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~  243 (628)
T 4a0p_A          209 HPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTI  243 (628)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEE
T ss_pred             CceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEE
Confidence            456788754 34444444578899999777765443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.42  E-value=0.084  Score=42.93  Aligned_cols=112  Identities=7%  Similarity=-0.211  Sum_probs=64.8

Q ss_pred             CCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE------EeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          259 TPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL------LGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       259 ~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                      ..+..++|+|+|.+.++  .+|.++-.+..+...      -..+-..--....++.|.|+|.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            47789999998876665  678777777644211      11110000112478899999987776  569898887633


Q ss_pred             CceeeEE----EeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          333 RQLLSAV----FLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       333 ~~~~~~~----~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      ...-.-+    .+....=..+..+.|.|+|.+.++. |+.+.-...+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P  162 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFYKALPP  162 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEEEECCC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEEecCCC
Confidence            2111100    0111111235889999999994444 7775443333

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.34  E-value=0.42  Score=41.25  Aligned_cols=145  Identities=12%  Similarity=0.081  Sum_probs=75.6

Q ss_pred             CCCEEEEEeCCC-----eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-------CcEE
Q 014154          173 SEKFSLFGGKGV-----EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-------HQVR  240 (430)
Q Consensus       173 ~~~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-------g~i~  240 (430)
                      ++..++.|+.++     .+.+||+.+.+-...-.... .  .    .....+.+    ++.+++.|+.+       ..+.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~--r----~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~  176 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT-R--R----SSVGVGVV----GGLLYAVGGYDVASRQCLSTVE  176 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSS-C--C----BSCEEEEE----TTEEEEECCEETTTTEECCCEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCC-c--c----cCceEEEE----CCEEEEEeCCCCCCCccccEEE
Confidence            456666666543     57888887754332211111 0  0    11122223    56677776542       3588


Q ss_pred             EEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEee--eeCCCCCCeEEEEec
Q 014154          241 LYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIARH  310 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~  310 (430)
                      +||+.+..  ...+..   .......+.+  ++.+++.|+.+     ..+.+||+.+.+-...  +... ......+.+ 
T Consensus       177 ~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~-  250 (302)
T 2xn4_A          177 CYNATTNE--WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC-RRNAGVCAV-  250 (302)
T ss_dssp             EEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE-
T ss_pred             EEeCCCCc--EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-cccCeEEEE-
Confidence            99988643  222211   1111122222  56677777654     4689999988764322  2111 111122222 


Q ss_pred             CCCCeEEEEeCCC-----cEEEEECCCCce
Q 014154          311 PTLPIIASCGLDS-----YLRFWDIKTRQL  335 (430)
Q Consensus       311 ~~~~~l~s~~~dg-----~i~iwd~~~~~~  335 (430)
                       ++.+++.|+.++     .+.+||+.+.+-
T Consensus       251 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          251 -NGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             -TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             -CCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence             667777777553     488888876543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.28  E-value=1.9  Score=40.33  Aligned_cols=92  Identities=11%  Similarity=-0.016  Sum_probs=60.4

Q ss_pred             EEEEECCC----CCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCC------eE-------EeeeeCCC
Q 014154          239 VRLYDTSA----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTG------KL-------LGCFIGKC  300 (430)
Q Consensus       239 i~iwd~~~----~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~------~~-------~~~~~~~~  300 (430)
                      |.+.|.+.    +...+..+... .....+.++|||+++++++ .+.++.++|++..      +.       ..+...  
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~p-ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~--  376 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVP-KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL--  376 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEES-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--
T ss_pred             eeEEccccccccCCceEEEEeCC-CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--
Confidence            55555554    22233333333 3446788999999998776 5788999998742      11       223332  


Q ss_pred             CCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC
Q 014154          301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR  333 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~  333 (430)
                      .-.....+|.++|.-..|.--|..|.-|++...
T Consensus       377 GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          377 GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             CCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            345678899999955555568999999999753

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.28  E-value=0.52  Score=40.84  Aligned_cols=104  Identities=12%  Similarity=0.079  Sum_probs=57.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeE
Q 014154          226 DHRKFVAGTND-----HQVRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKL  292 (430)
Q Consensus       226 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~  292 (430)
                      ++.+++.|+.+     ..+.+||+.+..  ...+..   ......++.+  ++.+++.|+.+     ..+.+||+.+.+-
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  196 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDE--WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW  196 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCe--EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence            56777776643     358889988643  222211   1111122222  56677777654     4689999987764


Q ss_pred             Eee--eeCCCCCCeEEEEecCCCCeEEEEeCC-----CcEEEEECCCCcee
Q 014154          293 LGC--FIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIKTRQLL  336 (430)
Q Consensus       293 ~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~  336 (430)
                      ...  +... ......+.+  ++.+++.|+.+     ..+.+||+.+.+-.
T Consensus       197 ~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          197 RMITAMNTI-RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             EECCCCSSC-CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             eeCCCCCCc-cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            322  2111 112223333  66777777654     46999999876543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.16  E-value=2.8  Score=41.53  Aligned_cols=188  Identities=16%  Similarity=0.156  Sum_probs=109.0

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ..|.++....++ .|.+|+.+| +..||..+.....    ....     ....|.++..   .++ .|..++.+ -|..|
T Consensus        63 ~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~----~~~~-----~~~~i~~i~~---~~g-~lWigt~~-Gl~~~  126 (758)
T 3ott_A           63 TRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQ----PETD-----FPTDVRTMAL---QGD-TLWLGALN-GLYTY  126 (758)
T ss_dssp             SCEEEEEEETTT-EEEEEETTE-EEEEETTTTEECC----CSCC-----CCSCEEEEEE---ETT-EEEEEETT-EEEEE
T ss_pred             ceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEEC----cccC-----CCceEEEEEe---cCC-cEEEEcCC-cceeE
Confidence            457777766655 566677664 7899987754321    1000     0134666544   244 56666666 67889


Q ss_pred             ECCCCCcceEEEe-----ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEee-eeCC---CCCCeEEEEecCCC
Q 014154          243 DTSAQRRPVMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC-FIGK---CSGSIRSIARHPTL  313 (430)
Q Consensus       243 d~~~~~~~~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~---~~~~v~~i~~~~~~  313 (430)
                      |..+..  +..+.     .....|.++....++.+. +|+..| |..||..+++.... ....   ....|.++...+++
T Consensus       127 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~  202 (758)
T 3ott_A          127 QLQSRK--LTSFDTRRNGLPNNTIYSIIRTKDNQIY-VGTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTR  202 (758)
T ss_dssp             ETTTCC--EEEECHHHHCCSCSCEEEEEECTTCCEE-EEETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTT
T ss_pred             eCCCCe--EEEeccCCCCcCCCeEEEEEEcCCCCEE-EEeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCC
Confidence            987643  33331     123468888887777554 455554 77888877664321 1111   02248888887776


Q ss_pred             CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          314 PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       314 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      ..|..|+. +-|..+|..+++......+   ....|.++....+|.+..++.+ -+.+++..
T Consensus       203 ~~lWigt~-~Gl~~~~~~~~~~~~~~~l---~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~  259 (758)
T 3ott_A          203 QCVWIGTE-GYLFQYFPSTGQIKQTEAF---HNNSIKSLALDGNGDLLAGTDN-GLYVYHND  259 (758)
T ss_dssp             TEEEEEEE-EEEEEEETTTTEEEEEEEE---EEEEEEEEEECTTCCEEEEETT-EEEEECCT
T ss_pred             CEEEEEEC-CCCeEEcCCCCeEEeccCC---CCCeEEEEEEcCCCCEEEEeCC-ceeEEecC
Confidence            65555553 4588899877654332111   1334788888888888444443 46666654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.03  E-value=1.8  Score=38.44  Aligned_cols=61  Identities=10%  Similarity=0.035  Sum_probs=40.9

Q ss_pred             CCeEEEEecC-------CCCEEEEEeCCCcEEEEEccCCeEEee--eeCCCCCCeEEEEecCCCCeEEEE
Q 014154          259 TPIKAVAEEP-------DSFNIYIGNGSGDLASVDIRTGKLLGC--FIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       259 ~~i~~~~~sp-------~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      .....+.|..       ++.++++....+.|...++..++.+..  +.......+..+++.|+|.++++.
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~t  340 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLT  340 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEE
Confidence            4567788853       567777766778888888877654332  211113578999999999865543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.97  E-value=1.2  Score=38.49  Aligned_cols=183  Identities=7%  Similarity=-0.012  Sum_probs=90.3

Q ss_pred             CCCEEEEEeC----CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC----C-----CcE
Q 014154          173 SEKFSLFGGK----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN----D-----HQV  239 (430)
Q Consensus       173 ~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----d-----g~i  239 (430)
                      ++.+++.|+.    -..+.+||..+.+-... ......       ..-.+++.   -++.+++.|+.    +     ..+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~-------r~~~~~~~---~~~~lyv~GG~~~~~~~~~~~~~~   92 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVP-------RSGLAGCV---VGGLLYAVGGRNNSPDGNTDSSAL   92 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSC-------CBSCEEEE---ETTEEEEECCEEEETTEEEECCCE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcc-------cccceEEE---ECCEEEEECCCcCCCCCCeecceE
Confidence            4566666663    23688999877653322 111100       11112222   15667777665    2     468


Q ss_pred             EEEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEee--eeCCCCCCeEEEEe
Q 014154          240 RLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLGC--FIGKCSGSIRSIAR  309 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~~v~~i~~  309 (430)
                      .+||+.+..  ...+..   .......+.+  ++++++.|+.+     ..+.+||+.+.+-...  +... ......+.+
T Consensus        93 ~~~d~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~  167 (308)
T 1zgk_A           93 DCYNPMTNQ--WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-RIGVGVAVL  167 (308)
T ss_dssp             EEEETTTTE--EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE
T ss_pred             EEECCCCCe--EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc-ccceEEEEE
Confidence            889988643  222211   1111222222  56666776643     4688999987764322  2211 112223333


Q ss_pred             cCCCCeEEEEeCC-----CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCC-----CceEecCCCC
Q 014154          310 HPTLPIIASCGLD-----SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADA-----PMLEIQNGND  376 (430)
Q Consensus       310 ~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d-----~~i~~~~~~~  376 (430)
                        ++.+++.|+.+     ..+.+||+.+.+-...-.+... ......+.+  ++++ +.++.+     ..+.+||...
T Consensus       168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~  240 (308)
T 1zgk_A          168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET  240 (308)
T ss_dssp             --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC
Confidence              66677777654     4588999887654322111111 111111222  5555 777654     3466666544

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.88  E-value=1.1  Score=39.66  Aligned_cols=149  Identities=10%  Similarity=-0.002  Sum_probs=76.1

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC----CCEEEEEeC---
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD----HRKFVAGTN---  235 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~l~s~~~---  235 (430)
                      .....|+|.|+++.|+++...|.|++++.. +.....+.... . ...........+++  +|+    +.+.++-+.   
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~-~-v~~~g~~g~~gia~--~pdf~~~g~lYv~~~~~~~   92 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVP-D-VWAHGQGGLLDVVL--APDFAQSRRIWLSYSEVGD   92 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCC-C-CCCSTTCSEEEEEE--CTTHHHHCEEEEEEEEECS
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCc-c-cccCCCCCceeEEE--CCCCCCCCEEEEEEeCCCC
Confidence            346789999999844456678999999853 33211111100 0 00001134678899  774    444444322   


Q ss_pred             ----CCcEEEEECCCCC----cceEEEeec------CCCeEEEEecCCCCEEEEEeC-------------CCcEEEEEcc
Q 014154          236 ----DHQVRLYDTSAQR----RPVMSFDFR------ETPIKAVAEEPDSFNIYIGNG-------------SGDLASVDIR  288 (430)
Q Consensus       236 ----dg~i~iwd~~~~~----~~~~~~~~~------~~~i~~~~~sp~~~~l~~~~~-------------d~~i~iwd~~  288 (430)
                          ...|..|++....    .....+..-      ......|+|.|||.+.++-+.             .|.|.-+|..
T Consensus        93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence                2356667665321    111112110      112357999999955554332             1456666764


Q ss_pred             CCe------------EEeeee-CCCCCCeEEEEecC-CCCeEEE
Q 014154          289 TGK------------LLGCFI-GKCSGSIRSIARHP-TLPIIAS  318 (430)
Q Consensus       289 ~~~------------~~~~~~-~~~~~~v~~i~~~~-~~~~l~s  318 (430)
                      ..-            ....+. ++  .....++|+| ++.++++
T Consensus       173 G~~p~~npf~~~~~~~~~i~a~G~--rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          173 GEIPDDNPFIKESGVRAEIWSYGI--RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             SCCCTTCTTTTSTTSCTTEEEECC--SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCCCCcCCCCCCccEEEEcC--cCccceEEECCCCCEEEE
Confidence            220            111122 32  3468899999 5554433

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.84  E-value=0.91  Score=39.41  Aligned_cols=105  Identities=14%  Similarity=0.114  Sum_probs=57.3

Q ss_pred             CCCEEEEEeCC--------CcEEEEECCCCCcceEEEee-cCCCe-EEEEecCCCCEEEEEeC-C-----CcEEEEEccC
Q 014154          226 DHRKFVAGTND--------HQVRLYDTSAQRRPVMSFDF-RETPI-KAVAEEPDSFNIYIGNG-S-----GDLASVDIRT  289 (430)
Q Consensus       226 ~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~-~~~~i-~~~~~sp~~~~l~~~~~-d-----~~i~iwd~~~  289 (430)
                      ++.+++.|+.+        ..+.+||+.+..  ...+.. ..... .+++. .++++++.|+. +     ..+.+||+.+
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFK--WGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCc--EeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCC
Confidence            56677777632        358899988642  222211 11111 12222 35667777765 2     4689999987


Q ss_pred             CeEEee--eeCCCCCCeEEEEecCCCCeEEEEeCCC-----cEEEEECCCCcee
Q 014154          290 GKLLGC--FIGKCSGSIRSIARHPTLPIIASCGLDS-----YLRFWDIKTRQLL  336 (430)
Q Consensus       290 ~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~  336 (430)
                      .+-...  +... ......+.+  ++.+++.|+.++     .+.+||+.+.+-.
T Consensus       175 ~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  225 (315)
T 4asc_A          175 FEWKELAPMQTA-RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA  225 (315)
T ss_dssp             TEEEECCCCSSC-CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred             CeEEECCCCCCc-hhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence            754322  2111 111222333  667778887654     5889999876543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.47  E-value=2.2  Score=36.98  Aligned_cols=105  Identities=14%  Similarity=0.196  Sum_probs=56.3

Q ss_pred             CCCEEEEEeCC-------CcEEEEECCCCCcceEEEeecCCCe--EEEEecCCCCEEEEEeC------CCcEEEEEccCC
Q 014154          226 DHRKFVAGTND-------HQVRLYDTSAQRRPVMSFDFRETPI--KAVAEEPDSFNIYIGNG------SGDLASVDIRTG  290 (430)
Q Consensus       226 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~i--~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~  290 (430)
                      ++.+++.|+.+       ..+.+||+.+..  ...+.....+.  .+++. .++.+++.|+.      -..+.+||+.+.
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            56777777754       357888988643  22221111111  11222 35666666653      245899999887


Q ss_pred             eEEee--eeCCCCCCeEEEEecCCCCeEEEEeCC-----CcEEEEECCCCcee
Q 014154          291 KLLGC--FIGKCSGSIRSIARHPTLPIIASCGLD-----SYLRFWDIKTRQLL  336 (430)
Q Consensus       291 ~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~  336 (430)
                      +-...  +... ......+.+  ++.+++.|+.+     ..+.+||+.+.+-.
T Consensus       186 ~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          186 DWKDLAPMKTP-RSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             EEEEECCCSSC-CBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             EEEECCCCCCC-cccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            64322  2211 111222333  66777777644     35778998876543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.40  E-value=2.3  Score=36.78  Aligned_cols=139  Identities=4%  Similarity=-0.090  Sum_probs=80.2

Q ss_pred             EEcCCCCEEEEEeCC--------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154          169 KVDISEKFSLFGGKG--------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (430)
Q Consensus       169 ~~~~~~~~l~~~~~d--------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  234 (430)
                      -+++++.+|+.....              ..|+..+++..+.......              .+..|  +++++.|+-..
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--------------~~~~~--s~~g~~Iy~~~  122 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--------------PCIYA--SLIGNYIYYLH  122 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--------------CEEEE--EEETTEEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--------------CccEE--EEeCCEEEEEe
Confidence            346677777766543              3577777766543222111              12245  55778777765


Q ss_pred             ----CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154          235 ----NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       235 ----~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  309 (430)
                          ....|..-++....  ...+..+..    ..++|+++.|+-.+. ...|...++..+.....+.+    ... ..+
T Consensus       123 ~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~-~~~  191 (302)
T 3s25_A          123 YDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCY-KPV  191 (302)
T ss_dssp             ESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEE-EEE
T ss_pred             ecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC----Ccc-cee
Confidence                23456566665422  344544432    457788888876654 57888888876665433332    222 345


Q ss_pred             cCCCCeEEEEeCC--CcEEEEECCCCc
Q 014154          310 HPTLPIIASCGLD--SYLRFWDIKTRQ  334 (430)
Q Consensus       310 ~~~~~~l~s~~~d--g~i~iwd~~~~~  334 (430)
                      +|++.+|+-...+  ..|..-++....
T Consensus       192 ~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          192 VLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             eecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            6989888776544  356666665444

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.13  E-value=1  Score=39.12  Aligned_cols=145  Identities=14%  Similarity=0.106  Sum_probs=74.2

Q ss_pred             CCCEEEEEeCC--------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-C-----Cc
Q 014154          173 SEKFSLFGGKG--------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D-----HQ  238 (430)
Q Consensus       173 ~~~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d-----g~  238 (430)
                      ++..++.|+.+        ..+.+||+.+.+-... ......  .    .....+.+    ++.+++.|+. +     ..
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~-~~~p~~--r----~~~~~~~~----~~~iyv~GG~~~~~~~~~~  166 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES-DPLPYV--V----YGHTVLSH----MDLVYVIGGKGSDRKCLNK  166 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC-CCCSSC--C----BSCEEEEE----TTEEEEECCBCTTSCBCCC
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC-CCCCCc--c----cceeEEEE----CCEEEEEeCCCCCCcccce
Confidence            45555566532        4588999887642211 111100  0    11122223    5667777775 2     46


Q ss_pred             EEEEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCCC-----cEEEEEccCCeEEee--eeCCCCCCeEEEE
Q 014154          239 VRLYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLLGC--FIGKCSGSIRSIA  308 (430)
Q Consensus       239 i~iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~--~~~~~~~~v~~i~  308 (430)
                      +.+||+.+..  ...+..   ......++.+  ++++++.|+.++     .+.+||+.+.+-...  +... ......+.
T Consensus       167 ~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~  241 (315)
T 4asc_A          167 MCVYDPKKFE--WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-RSSLSLVS  241 (315)
T ss_dssp             EEEEETTTTE--EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-CBSCEEEE
T ss_pred             EEEEeCCCCe--EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-ccceeEEE
Confidence            8899988642  222221   1111122222  567777777654     588999988754322  2111 11222333


Q ss_pred             ecCCCCeEEEEeCCC--------------cEEEEECCCCce
Q 014154          309 RHPTLPIIASCGLDS--------------YLRFWDIKTRQL  335 (430)
Q Consensus       309 ~~~~~~~l~s~~~dg--------------~i~iwd~~~~~~  335 (430)
                      +  ++.+++.|+.++              .+.+||+.+.+-
T Consensus       242 ~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W  280 (315)
T 4asc_A          242 L--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW  280 (315)
T ss_dssp             E--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred             E--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence            3  567777777542              366778776543

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=93.88  E-value=5.6  Score=39.41  Aligned_cols=200  Identities=11%  Similarity=0.050  Sum_probs=111.2

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCE--KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVR  240 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~  240 (430)
                      ..|.++....++.+.+ |+.+ -+..++..++.  ....+..... ...+ ....|.++.-  ..++.+ ..|+ ++-|.
T Consensus       324 ~~v~~i~~D~~g~lWi-Gt~~-Gl~~~~~~~~~~~~~~~~~~~~~-~~~l-~~~~v~~i~~--d~~g~l-Wigt-~~GL~  395 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWF-GGAN-GLIRFTDPAGERHDAIWYRMGDK-TYPL-SHNRIRHIYE--DKEQQL-WIAT-DGSIN  395 (758)
T ss_dssp             CBEEEEEECTTCCEEE-EETT-EEEEESCTTSSCCCCEEECTTCS-SSCC-SCSCEEEEEE--CTTSCE-EEEE-TTEEE
T ss_pred             ceEEEEEEcCCCCEEE-eeCC-cceeecccccccceeEEeccCCc-CCCC-CCCceEEEEE--CCCCCE-EEEe-CCcHh
Confidence            4688888887776655 5555 46667665432  1111211100 0011 1245777766  566654 4456 45788


Q ss_pred             EEECCCCCcceEEEe--e-----cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC------CeEE--eeee---CCCCC
Q 014154          241 LYDTSAQRRPVMSFD--F-----RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT------GKLL--GCFI---GKCSG  302 (430)
Q Consensus       241 iwd~~~~~~~~~~~~--~-----~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~------~~~~--~~~~---~~~~~  302 (430)
                      .||..++.  ...+.  .     ....|.++...+++ .|..|+..+-|.++|..+      ....  ..+.   +-...
T Consensus       396 ~~~~~~~~--~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  472 (758)
T 3ott_A          396 RYDYATRQ--FIHYNIVDNTGTYNTNWTYYIFEDTAG-QLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGM  472 (758)
T ss_dssp             EEETTTTE--EEEEEEECCC--CBSSSEEEEEECTTS-EEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCS
T ss_pred             hcCcCCCc--EEEeecCCCcCCCCCceEEEEEEcCCC-CEEEEECCCceEEEccccccccCCcceecccccccccccccc
Confidence            99988743  22222  1     12357888777666 566677666688888653      1111  1111   11123


Q ss_pred             CeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc-ccceEEeeeccccccccccCCCCceEecCCC
Q 014154          303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH-LNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       303 ~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      .|.++...++|.+.+.++..+-|..+|..+++.... ..... ....+.++....+|.+-.++..| +..|+..
T Consensus       473 ~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~-~~~~~~~~~~~~~i~~d~~g~lWigt~~G-l~~~~~~  544 (758)
T 3ott_A          473 FINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL-FADELTGEKSPNYLLCDEDGLLWVGFHGG-VMRINPK  544 (758)
T ss_dssp             CEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE-CTTTSCGGGCEEEEEECTTSCEEEEETTE-EEEECC-
T ss_pred             eeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe-cCCCcCCCcccceEEECCCCCEEEEecCc-eEEEecC
Confidence            589999988888665334444588899887654432 11111 12346777788888884344444 6666643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.72  E-value=1.6  Score=37.89  Aligned_cols=146  Identities=12%  Similarity=0.128  Sum_probs=73.6

Q ss_pred             CCCEEEEEeCC-------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC------CCcE
Q 014154          173 SEKFSLFGGKG-------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN------DHQV  239 (430)
Q Consensus       173 ~~~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------dg~i  239 (430)
                      ++..++.|+.+       ..+.+||+.+.+-........ .       ..-.+++.   .++.+++.|+.      -..+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~-------r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~  177 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI-K-------VYGHNVIS---HNGMIYCLGGKTDDKKCTNRV  177 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS-C-------EESCEEEE---ETTEEEEECCEESSSCBCCCE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC-c-------ccccEEEE---ECCEEEEEcCCCCCCCccceE
Confidence            45566666653       357888887754332211110 0       01111222   25667777764      2358


Q ss_pred             EEEECCCCCcceEEEeec---CCCeEEEEecCCCCEEEEEeCC-----CcEEEEEccCCeEEe--eeeCCCCCCeEEEEe
Q 014154          240 RLYDTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGS-----GDLASVDIRTGKLLG--CFIGKCSGSIRSIAR  309 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~  309 (430)
                      .+||+.+..  ...+...   .....++.+  ++++++.|+.+     ..+.+||+.+.+-..  .+... ......+.+
T Consensus       178 ~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~  252 (318)
T 2woz_A          178 FIYNPKKGD--WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE-RSSISLVSL  252 (318)
T ss_dssp             EEEETTTTE--EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-CBSCEEEEE
T ss_pred             EEEcCCCCE--EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-ccceEEEEE
Confidence            899998743  2222211   111122222  56677777643     357789988765432  22211 111222333


Q ss_pred             cCCCCeEEEEeCC--------------CcEEEEECCCCcee
Q 014154          310 HPTLPIIASCGLD--------------SYLRFWDIKTRQLL  336 (430)
Q Consensus       310 ~~~~~~l~s~~~d--------------g~i~iwd~~~~~~~  336 (430)
                        ++.+++.|+.+              ..+.+||+.+.+-.
T Consensus       253 --~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  291 (318)
T 2woz_A          253 --AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA  291 (318)
T ss_dssp             --TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred             --CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence              56677777654              34778888765443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.54  E-value=1.9  Score=38.06  Aligned_cols=61  Identities=11%  Similarity=0.006  Sum_probs=31.1

Q ss_pred             cEEEEEccCCeE--EeeeeCCCCCCeEEEEecCCCCeEEEEeCCC------cEEEEECCCCceeeEEEeecc
Q 014154          281 DLASVDIRTGKL--LGCFIGKCSGSIRSIARHPTLPIIASCGLDS------YLRFWDIKTRQLLSAVFLKQH  344 (430)
Q Consensus       281 ~i~iwd~~~~~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~  344 (430)
                      .+.+||+.+.+-  +..+... ...-.++.  .++.+++.|+.++      .|.++++++++.+....+.+|
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~  354 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQG-RAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHH  354 (357)
T ss_dssp             CCEEEECC---CEEEEECSSC-CBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-----
T ss_pred             eEEEEecCCCceeeCCCCCCC-cccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccccc
Confidence            578899886543  3333322 22222333  3677888888653      366678888887776544443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=92.42  E-value=3.2  Score=36.65  Aligned_cols=144  Identities=15%  Similarity=0.019  Sum_probs=71.2

Q ss_pred             CCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-C---------CcEEE
Q 014154          173 SEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D---------HQVRL  241 (430)
Q Consensus       173 ~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d---------g~i~i  241 (430)
                      ++.+++.|+. ...+.+||+.+....+...........    .....+.+    ++.+++.|+. +         ..+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R----~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~v~~   90 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPR----DQATSAFI----DGNLYVFGGIGKNSEGLTQVFNDVHK   90 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCC----BSCEEEEE----TTEEEEECCEEECTTSCEEECCCEEE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcC----ccceEEEE----CCEEEEEcCCCCCCCccceeeccEEE
Confidence            4455555543 346888998742223332221110000    11122223    5667777765 2         46889


Q ss_pred             EECCCCCcceEEEeec--C--CCeEEEEecCCCCEEEEEeCC--------------------------------------
Q 014154          242 YDTSAQRRPVMSFDFR--E--TPIKAVAEEPDSFNIYIGNGS--------------------------------------  279 (430)
Q Consensus       242 wd~~~~~~~~~~~~~~--~--~~i~~~~~sp~~~~l~~~~~d--------------------------------------  279 (430)
                      ||+.+..  ...+...  .  ....++.  .++++++.|+.+                                      
T Consensus        91 yd~~~~~--W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (357)
T 2uvk_A           91 YNPKTNS--WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFF  166 (357)
T ss_dssp             EETTTTE--EEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCC
T ss_pred             EeCCCCc--EEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCC
Confidence            9988743  2222111  1  1122222  467777888754                                      


Q ss_pred             -CcEEEEEccCCeEEe--eeeCCCCCCeEEEEecCCCCeEEEEeC------CCcEEEEEC
Q 014154          280 -GDLASVDIRTGKLLG--CFIGKCSGSIRSIARHPTLPIIASCGL------DSYLRFWDI  330 (430)
Q Consensus       280 -~~i~iwd~~~~~~~~--~~~~~~~~~v~~i~~~~~~~~l~s~~~------dg~i~iwd~  330 (430)
                       ..+.+||+.+.+-..  .+... ...-.+++.. ++.+++.|+.      ...+.+||+
T Consensus       167 ~~~v~~yd~~~~~W~~~~~~p~~-~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~  224 (357)
T 2uvk_A          167 NKFLLSFDPSTQQWSYAGESPWY-GTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF  224 (357)
T ss_dssp             CCEEEEEETTTTEEEEEEECSSC-CCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred             cccEEEEeCCCCcEEECCCCCCC-CcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence             578999998776432  22211 1110222222 5666677653      235777876

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=91.26  E-value=6.6  Score=33.80  Aligned_cols=101  Identities=10%  Similarity=-0.008  Sum_probs=61.1

Q ss_pred             cCCCCEEEEEeCC--------------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe----CCCcEEEE
Q 014154          224 IDDHRKFVAGTND--------------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN----GSGDLASV  285 (430)
Q Consensus       224 ~~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~----~d~~i~iw  285 (430)
                      ++++..|+.+...              ..|+..++.....  ..+..  ..  +..|++++++|+-..    ....|+..
T Consensus        61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~--~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~  134 (302)
T 3s25_A           61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS--TVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRI  134 (302)
T ss_dssp             EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC--EEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred             EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc--eEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEE
Confidence            5677877776543              3677777776442  23322  22  236778888888765    33456666


Q ss_pred             EccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC-CCcEEEEECCCCcee
Q 014154          286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTRQLL  336 (430)
Q Consensus       286 d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~  336 (430)
                      ++.. .....+..+ ..    ..|+|+++.|+-.+. ...|++-++..+...
T Consensus       135 ~~dG-s~~~~lt~~-~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~  180 (302)
T 3s25_A          135 RIDG-EEKKKIKNH-YL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA  180 (302)
T ss_dssp             ETTS-CCCEEEESS-CC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred             ECCC-CCeEEEeCC-Cc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence            6653 333445443 22    456778888876665 567888888765533

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.23  E-value=7.4  Score=34.26  Aligned_cols=242  Identities=12%  Similarity=0.127  Sum_probs=117.7

Q ss_pred             eeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE-ccCC
Q 014154           55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKG  133 (430)
Q Consensus        55 ~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g  133 (430)
                      ..+.+  .|+|.++++-...|.|.+++..+++. ..+..+ +..+.........+.+.+.-..+     +.+... +...
T Consensus        35 ~~ia~--~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~-~~v~~~g~~GllGia~~Pdf~~~-----g~lYv~yt~~~  105 (347)
T 3das_A           35 WGLAP--LPGGDLLVSSRDEATITRVDAKTGRK-TELGEV-PGVSPSGEGGLLGIALSPDYASD-----HMVYAYFTSAS  105 (347)
T ss_dssp             EEEEE--CTTSCEEEEETTTCEEEEECTTTCCE-EEEEEC-TTCCCBTTBSEEEEEECTTHHHH-----CEEEEEEECSS
T ss_pred             eEEEE--cCCCcEEEEEecCCEEEEEECCCCcE-eeeccc-CceeecCCCCceeeEeccccccC-----CEEEEEEecCC
Confidence            34555  77888666665589999998755543 222211 11122334566777776531111     344332 2222


Q ss_pred             eeEEEEeeecCcc-c-cCCCcceEEee-ec--CCCceEEEEEcCCCCEEEEEeC-------------CCeEEEEECCCC-
Q 014154          134 KASMRSIEVTKVS-A-ESSCSTVKSWN-VC--ASGTIAFSKVDISEKFSLFGGK-------------GVEVNVWDLDKC-  194 (430)
Q Consensus       134 ~~~v~~~~~~~~~-~-~~~~~~i~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~-  194 (430)
                      ..+|..+...... . ......-.++. +.  .......|.|.|++.+.++.+.             .|.|.-++.+.. 
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            3355555433210 0 01111222222 21  1223456999999987776543             244444444321 


Q ss_pred             --------eeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCC--cEEEEECC--------C-------CC
Q 014154          195 --------EKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDH--QVRLYDTS--------A-------QR  248 (430)
Q Consensus       195 --------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~--------~-------~~  248 (430)
                              ..++..        ++   .....++|  +|++.+.++-. .++  .|.+...-        .       ..
T Consensus       186 p~~nPf~~~~i~a~--------G~---RNp~Gla~--dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~  252 (347)
T 3das_A          186 APGNPFPGSPVYSY--------GH---RNVQGLAW--DDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFH  252 (347)
T ss_dssp             CTTCSSTTCCEEEB--------CC---SBCCEEEE--CTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCC
T ss_pred             cCCCCCCCCeEEee--------CC---CCcceEEE--CCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCcccc
Confidence                    001111        00   23567788  67776655432 222  23222110        0       01


Q ss_pred             cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE----EeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL----LGCFIGKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      .|+..+..+......++|. ++..++..-..+.|....+.....    ...+.+. ...+..|+..|||.++++..
T Consensus       253 ~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          253 DPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETTEEEEEEC
T ss_pred             CCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCCcEEEEEc
Confidence            2344443332456777776 455555555566777777765442    2223333 46789999999997655543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.58  E-value=14  Score=36.24  Aligned_cols=155  Identities=8%  Similarity=0.071  Sum_probs=82.1

Q ss_pred             CCCCEEEEEeCC----CeEEEEECCCCeeeEee-CCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC------cEE
Q 014154          172 ISEKFSLFGGKG----VEVNVWDLDKCEKIWTA-KPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH------QVR  240 (430)
Q Consensus       172 ~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg------~i~  240 (430)
                      .++..++.|+.+    ..+.+||..+.+-.... .....   .+..+-.-.+++.. ..++.+++.|+.++      .+.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~---~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~  471 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSS---EVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNW  471 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCS---CCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCC---CCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEE
Confidence            456677777753    46888998776433222 10000   00000111222331 22677777777543      578


Q ss_pred             EEECCCCCcceEEEee---cCCCeEEEEecCCCCEEEEEeCCC--cEEEEEccCCeEEeee-----eCCCCCCeEEEEec
Q 014154          241 LYDTSAQRRPVMSFDF---RETPIKAVAEEPDSFNIYIGNGSG--DLASVDIRTGKLLGCF-----IGKCSGSIRSIARH  310 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~--~i~iwd~~~~~~~~~~-----~~~~~~~v~~i~~~  310 (430)
                      +||+.+..  ...+..   .... .+++.-.++.+++.|+.++  .+.+||..+.+-...-     ... .....++.+.
T Consensus       472 ~yd~~t~~--W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~-r~~~~a~v~~  547 (695)
T 2zwa_A          472 IFDMKTRE--WSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN-SLVSAGLEFD  547 (695)
T ss_dssp             EEETTTTE--EEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS-CCBSCEEEEE
T ss_pred             EEeCCCCc--EEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc-ccceeEEEEe
Confidence            89988732  122211   1111 2233323777888887654  6999999887643221     111 2222345555


Q ss_pred             CC-CCeEEEEeC--C-----CcEEEEECCCCc
Q 014154          311 PT-LPIIASCGL--D-----SYLRFWDIKTRQ  334 (430)
Q Consensus       311 ~~-~~~l~s~~~--d-----g~i~iwd~~~~~  334 (430)
                      .+ +.+++.||.  +     ..+.+||+.+..
T Consensus       548 ~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          548 PVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            55 667777765  2     358899998776

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=89.90  E-value=13  Score=34.97  Aligned_cols=102  Identities=5%  Similarity=-0.126  Sum_probs=67.6

Q ss_pred             cceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCC-----------Ccc-eEEEeecCCCeEEEEecCCCCEEEEEeCCC
Q 014154          214 TWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQ-----------RRP-VMSFDFRETPIKAVAEEPDSFNIYIGNGSG  280 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~-----------~~~-~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~  280 (430)
                      .....+.+  +|||.+++.++ .+.++.++|+...           +.. +.... -.......+|.++|+...+-.-|.
T Consensus       323 ksPHGv~v--sPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidS  399 (638)
T 3sbq_A          323 KNPHGCNT--SSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDS  399 (638)
T ss_dssp             SSCCCEEE--CTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTT
T ss_pred             CCCcceee--CCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecc
Confidence            34556666  89999888766 5778999998731           111 11222 234567789999995555666899


Q ss_pred             cEEEEEccCC----------eEEeeeeCCCCCCeEEEEe------cCCCCeEEEEe
Q 014154          281 DLASVDIRTG----------KLLGCFIGKCSGSIRSIAR------HPTLPIIASCG  320 (430)
Q Consensus       281 ~i~iwd~~~~----------~~~~~~~~~~~~~v~~i~~------~~~~~~l~s~~  320 (430)
                      .|..|++...          ..+..+..| - .+-.+.-      .|+|++|++..
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~-Y-qpGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVH-Y-QPGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECS-S-CEEEEEETTTTSTTCCSCEEEEEE
T ss_pred             eEEEEeccHHHHHhcCccCCeeeeccccc-c-CCcccccCCCccCCCCccEEEEec
Confidence            9999998753          456666665 2 2333333      57899999884

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.18  E-value=4.8  Score=39.46  Aligned_cols=151  Identities=12%  Similarity=0.096  Sum_probs=80.8

Q ss_pred             CCCEEEEEeCC------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC--cEEEEEC
Q 014154          173 SEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH--QVRLYDT  244 (430)
Q Consensus       173 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~  244 (430)
                      ++..++.|+.+      +.+.+||+.+..-...  ....      .+-.-.+++.  -.++.+++.|+.++  .+.+||+
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~--~~~p------~~R~~h~~~~--~~~~~iyv~GG~~~~~~v~~yd~  520 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMI--KSLS------HTRFRHSACS--LPDGNVLILGGVTEGPAMLLYNV  520 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEEC--CCCS------BCCBSCEEEE--CTTSCEEEECCBCSSCSEEEEET
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEEC--CCCC------CCcccceEEE--EcCCEEEEECCCCCCCCEEEEEC
Confidence            56667777643      3578888877532221  1100      0011122222  13778888887655  6899999


Q ss_pred             CCCCcceEEEee------cCCCeEEEEecCC-CCEEEEEeC--C-----CcEEEEEccCCe------EE--eeeeCCCCC
Q 014154          245 SAQRRPVMSFDF------RETPIKAVAEEPD-SFNIYIGNG--S-----GDLASVDIRTGK------LL--GCFIGKCSG  302 (430)
Q Consensus       245 ~~~~~~~~~~~~------~~~~i~~~~~sp~-~~~l~~~~~--d-----~~i~iwd~~~~~------~~--~~~~~~~~~  302 (430)
                      .+..  ...+..      ......++.+..+ +..++.|+.  +     +.+.+||+.+.+      -.  .........
T Consensus       521 ~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~  598 (695)
T 2zwa_A          521 TEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY  598 (695)
T ss_dssp             TTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB
T ss_pred             CCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc
Confidence            8743  222221      1122233555555 666777765  2     458899998876      21  111111011


Q ss_pred             CeEEEEecCCCCeEEEEeC--------CCcEEEEECCCCcee
Q 014154          303 SIRSIARHPTLPIIASCGL--------DSYLRFWDIKTRQLL  336 (430)
Q Consensus       303 ~v~~i~~~~~~~~l~s~~~--------dg~i~iwd~~~~~~~  336 (430)
                      ....+.+ .++.+++.||.        ...|.+||+.+.+-.
T Consensus       599 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          599 GSQIKYI-TPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             SCEEEEE-ETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             cceEEEe-CCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            2223333 33677777774        346999999876544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=88.98  E-value=14  Score=33.98  Aligned_cols=120  Identities=12%  Similarity=0.123  Sum_probs=57.6

Q ss_pred             eeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCC-CCCCceEEEEEeecCcccccccCceEEEEccC
Q 014154           54 VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQ-PEDDGIVGLHLFKRQREESSSRSRTLLTCTTK  132 (430)
Q Consensus        54 ~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (430)
                      ..++.+  .|+|+++++-...+.|.+++..++... .+..+...... .....+..+.+.+.-..+     +.+..+...
T Consensus        29 P~~~a~--~pdG~l~V~e~~gg~I~~~~~~~g~~~-~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~-----g~lYv~~s~  100 (454)
T 1cru_A           29 PHALLW--GPDNQIWLTERATGKILRVNPESGSVK-TVFQVPEIVNDADGQNGLLGFAFHPDFKNN-----PYIYISGTF  100 (454)
T ss_dssp             EEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCCTTSSCSEEEEEECTTTTTS-----CEEEEEEEE
T ss_pred             ceEEEE--cCCCcEEEEEcCCCEEEEEECCCCcEe-EEecCCccccccCCCCceeEEEECCCcCcC-----CEEEEEEec
Confidence            345666  788886666544457888876555432 22221111111 134567777776531111     344433321


Q ss_pred             -----------CeeEEEEeeecCccccCCCcceEEee-ec--CCCceEEEEEcCCCCEEEEEeC
Q 014154          133 -----------GKASMRSIEVTKVSAESSCSTVKSWN-VC--ASGTIAFSKVDISEKFSLFGGK  182 (430)
Q Consensus       133 -----------g~~~v~~~~~~~~~~~~~~~~i~~~~-~~--~~~~i~~~~~~~~~~~l~~~~~  182 (430)
                                 ....|+.+........ .+....++. +.  .......|+|.|++.+.++.+.
T Consensus       101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~-~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          101 KNPKSTDKELPNQTIIRRYTYNKSTDT-LEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             ECTTC--CCSCEEEEEEEEEEETTTTE-EEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccCCCccccccccEEEEEEECCCCCC-cCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                       1345555554321000 011112232 11  1234688999999987776543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.56  E-value=16  Score=33.71  Aligned_cols=106  Identities=9%  Similarity=0.053  Sum_probs=60.5

Q ss_pred             ceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCC--cceEEEe---------ecCCCeEEEEecCC---CCEEEEE-eC
Q 014154          215 WFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR--RPVMSFD---------FRETPIKAVAEEPD---SFNIYIG-NG  278 (430)
Q Consensus       215 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~---------~~~~~i~~~~~sp~---~~~l~~~-~~  278 (430)
                      ....|+|  .|++. .|+++...|.|++++.....  .++..+.         ..+.....|+|+|+   ..+|++. +.
T Consensus        15 ~P~~~a~--~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           15 QPVGALH--SGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SEEEEEC--CSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CceEEEE--CCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            3678888  78885 45556789999999754321  1222221         11356789999996   2344433 21


Q ss_pred             --C----------CcEEEEEccC----------CeEEeeee-CCCCCCeEEEEecCCCCeEEEEeCC
Q 014154          279 --S----------GDLASVDIRT----------GKLLGCFI-GKCSGSIRSIARHPTLPIIASCGLD  322 (430)
Q Consensus       279 --d----------~~i~iwd~~~----------~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~d  322 (430)
                        +          ..|.-|.+..          .+.+..+. .........|.|.|||.+.++.+..
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence              1          1344455532          23333333 1112346889999999877766543

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=87.33  E-value=13  Score=31.93  Aligned_cols=212  Identities=9%  Similarity=0.041  Sum_probs=105.8

Q ss_pred             CCCceeEEeecCCeEEEecCCCCcccce-eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           63 QNDPLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      |+.+++++.+.+|.|+--.+.+.+.... -.+..... ....+.+..+...+...        .++..+..|.+.-..+.
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~-~ke~D~l~~~~~~~~~~--------~ll~fT~~G~~~~~~~~   71 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAAR-IKEEDFIDRLLVANTHD--------HILCFSSRGRVYSMKVY   71 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--------EEEEEETTSEEEEEEGG
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeee-eCCCCEEEEEEEECCCC--------EEEEEECCCEEEEEEhh
Confidence            3456788899999998776654332111 00100000 01234554444444433        66667777766555544


Q ss_pred             ecCccccCCCcc--eEEeeecCCCceEEEEEc---CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcce
Q 014154          142 VTKVSAESSCST--VKSWNVCASGTIAFSKVD---ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF  216 (430)
Q Consensus       142 ~~~~~~~~~~~~--i~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v  216 (430)
                      .-|.......|.  +.+..+..+..|..+..-   .++.+++..+..|.++...+........ .+  .....+...+.+
T Consensus        72 elp~~~~~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r-~G--~~~i~l~~~d~l  148 (307)
T 1zi0_A           72 QLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT-AG--KVAIKLVDGDEL  148 (307)
T ss_dssp             GSCCCCSSSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT-TC--EESSCCCTTCCE
T ss_pred             HCcCCCCCCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc-CC--eEEEEECCCCEE
Confidence            333322112221  112233445556655432   3566888999999999987753211100 00  000011111344


Q ss_pred             eEEEEeecCCCCEEEEEeCCCcEEEEECCCCCc------ceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEcc
Q 014154          217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRR------PVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIR  288 (430)
Q Consensus       217 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~  288 (430)
                      ..+..  ......|+..+.+|.+..+....-..      -+..+.. ....|.++...+++..|++.+..|.++-.++.
T Consensus       149 v~~~~--~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~  225 (307)
T 1zi0_A          149 IGVDL--TSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVA  225 (307)
T ss_dssp             EEEEE--ECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGG
T ss_pred             EEEEE--eCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHH
Confidence            44444  23345677778899888887643110      0111111 23456666555555678888999998888764

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=83.69  E-value=19  Score=30.47  Aligned_cols=184  Identities=9%  Similarity=-0.059  Sum_probs=92.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      .|..++.... ..++. . ||.|+.|-......+-.   +    ..+  ...|..++.  ..  ...+.-. +|.|+.|-
T Consensus        64 ~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~---P----~~~--~~~v~~ia~--G~--~hs~al~-~G~v~~wG  126 (282)
T 3qhy_B           64 GVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTV---P----AEA--RSGVDAIAA--GA--WASYALK-DGKVIAWG  126 (282)
T ss_dssp             CCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCC---C----GGG--SSSEEEEEE--ET--TEEEEEE-TTEEEEEE
T ss_pred             CEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCC---C----ccc--CCCeEEEEC--cC--CEEEEEe-CCeEEEec
Confidence            4555555422 23333 4 88999987654222110   0    000  134666666  32  2333335 99999998


Q ss_pred             CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                      .....+.-. .......|..++....  +.+.-. ||.|+.|-....-.+..-... ...|..|+.-.... ++.  .||
T Consensus       127 ~n~~gqlg~-~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gqlg~p~~~-~~~v~~i~~G~~hs-~al--~~G  198 (282)
T 3qhy_B          127 DDSDGQTTV-PAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQTTVPAEA-QSGVDDVAGGIFHS-LAL--KDG  198 (282)
T ss_dssp             CCTTSTTSC-CGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGG-GSSEEEEEECSSEE-EEE--ETT
T ss_pred             CCCCCcCCC-CccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCCCCceec-CCCeEEEEecCCEE-EEE--ECC
Confidence            765322110 0112245777765433  233333 789999876542222111111 34677777654433 333  599


Q ss_pred             cEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCCC
Q 014154          324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       324 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                      .|+.|-......+..   +......|..++-..+..++. . |+.+..|-.+..
T Consensus       199 ~v~~wG~n~~gqlg~---p~~~~~~v~~i~~G~~h~~al-~-~g~v~~wG~n~~  247 (282)
T 3qhy_B          199 KVIAWGDNRYKQTTV---PTEALSGVSAIASGEWYSLAL-K-NGKVIAWGSSRT  247 (282)
T ss_dssp             EEEEEECCTTSTTCC---CGGGGSSCCEEEECSSCEEEE-E-TTEEEEESTTCC
T ss_pred             eEEEEECCCCCCCCC---CcccCCCceEEEcCCCEEEEE-E-CCEEEEecCCCC
Confidence            999997654322221   111112244555443333333 3 899999987763

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=82.74  E-value=23  Score=30.59  Aligned_cols=213  Identities=13%  Similarity=0.115  Sum_probs=109.2

Q ss_pred             CCCceeEEeecCCeEEEecCCCCcccce-eeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           63 QNDPLLAVARKNGLTDILNPLNGDLRVA-ISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        63 p~g~~l~~g~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      |+.+++++.+.+|.|+--.+...+.... -.+..... ...++.+..+...+...        .++..+..|.+.-....
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~-lke~D~l~~~~~~~~~~--------~ll~~T~~G~~~~~~~~   76 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFD-LNDGDEIVIALCVNTHD--------YLFMISNEGKLYLINAY   76 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCC-CCTTCCEEEEEEEETTC--------EEEEEETTSEEEEEEGG
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecc-cCCCCEEEEEEEECCCC--------EEEEEECCCeEEEEEHH
Confidence            3456788899999999886644332211 00110111 12335565555544433        67777777776666544


Q ss_pred             ecCccccCCCcc--eEEeeecCCCceEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcce
Q 014154          142 VTKVSAESSCST--VKSWNVCASGTIAFSKVDI---SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWF  216 (430)
Q Consensus       142 ~~~~~~~~~~~~--i~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v  216 (430)
                      .-|...-...|.  .....+..+..|..+...+   +..+|+..+..|.++...+.......   ........+...+.+
T Consensus        77 ~ip~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r---~~G~~~i~L~~~d~l  153 (312)
T 1suu_A           77 EIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK---SRGVIVIKLNDKDFV  153 (312)
T ss_dssp             GSCC-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-------CEECBCCCTTCCE
T ss_pred             HCCCCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC---CCcEEEEecCCCCEE
Confidence            322211001110  0112233344555554332   46788889999999988875321111   000000111112445


Q ss_pred             eEEEEeecCCCCEEEEEeCCCcEEEEECCCC----C--cceEEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC
Q 014154          217 TSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ----R--RPVMSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT  289 (430)
Q Consensus       217 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----~--~~~~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~  289 (430)
                      ..+..  ......++..+.+|.+..+....-    +  .=+..+.. ....|.++..-.++..|++.+..|.....++..
T Consensus       154 v~~~~--~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e  231 (312)
T 1suu_A          154 TSAEI--VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK  231 (312)
T ss_dssp             EEEEE--ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred             EEEEE--eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence            55555  233556778899999988876531    1  01111221 134566665545566788888999999888754

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=82.55  E-value=12  Score=38.06  Aligned_cols=40  Identities=25%  Similarity=0.301  Sum_probs=33.9

Q ss_pred             CCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe
Q 014154          302 GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       302 ~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  341 (430)
                      ..+.+++..++..++++-+.|+.+|||++.+++++.+..+
T Consensus       236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            3567778888889999999999999999999998877543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=81.98  E-value=5.1  Score=38.14  Aligned_cols=59  Identities=12%  Similarity=0.174  Sum_probs=44.4

Q ss_pred             eEEEEecCCCCEEEEEeCC------------CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEE
Q 014154          261 IKAVAEEPDSFNIYIGNGS------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       261 i~~~~~sp~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                      .-.|+|+|.|++++.-..+            +.+.+.+..++++..-+.+...+.++.++|+||++.|+..
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            4678999999866654322            3466677778888777777657899999999999887765

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=81.29  E-value=24  Score=29.87  Aligned_cols=183  Identities=10%  Similarity=-0.010  Sum_probs=95.4

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      .|..++...  .+.+.-. ||.|+.|-......+-.   +.      .....|..++.  .. ...++. . ||.|..|-
T Consensus        25 ~i~~ia~G~--~h~~~l~-~G~v~~wG~n~~Gqlg~---p~------~~~~~i~~ia~--G~-~hs~~l-~-~G~v~~wG   87 (282)
T 3qhy_B           25 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTM---PA------ATQSGVDAIAA--GN-YHSLAL-K-DGEVIAWG   87 (282)
T ss_dssp             SCCEEEECS--SEEEEEE-TTEEEEEECCSSSTTSC---CG------GGGSCCCEEEE--CS-SEEEEE-E-TTEEEEEE
T ss_pred             CCcEEEeCC--CeEEEEE-CCEEEEEeCCCCCCCCC---Cc------cCCCCEEEEEe--CC-CEEEEE-E-CCEEEEee
Confidence            455555543  2323335 89999997654222110   00      01134666666  32 233444 4 99999998


Q ss_pred             CCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC
Q 014154          244 TSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                      .....+.-. -..-...|..|+....  +.+.-. +|.|+.|-....-.+...... ...|..++......+ + -. ||
T Consensus        88 ~n~~Gqlg~-P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~-~~~i~~i~~G~~~~~-~-l~-~G  159 (282)
T 3qhy_B           88 GNEDGQTTV-PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEA-QSGVTALDGGVYTAL-A-VK-NG  159 (282)
T ss_dssp             CCTTSTTCC-CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGG-GSSEEEEEECSSEEE-E-EE-TT
T ss_pred             CCCCCCCCC-CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccC-CCCeEEEEcccCEEE-E-EE-CC
Confidence            765322110 0001246777776544  344445 999999976542221111111 346777776444322 2 23 79


Q ss_pred             cEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       324 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      .|+.|-......+..   +......+..++...+..++.  .||.|..|-.+.
T Consensus       160 ~v~~wG~n~~gqlg~---p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~  207 (282)
T 3qhy_B          160 GVIAWGDNYFGQTTV---PAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNR  207 (282)
T ss_dssp             EEEEEECCTTSTTSC---CGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCT
T ss_pred             EEEEecCCCCCCCCC---ceecCCCeEEEEecCCEEEEE--ECCeEEEEECCC
Confidence            999997654322221   111123356666555444443  589999997765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	430
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	7e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.4 bits (155), Expect = 6e-12
 Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 13/145 (8%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL-YDT 244
             +WD+ +     T                  +  F    +   F  G++D   RL    
Sbjct: 208 AKLWDVREGMCRQTFTGHES---------DINAICFFP--NGNAFATGSDDATCRLFDLR 256

Query: 245 SAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSI 304
           + Q     S D     I +V+       +  G    +    D       G   G     +
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRV 315

Query: 305 RSIARHPTLPIIASCGLDSYLRFWD 329
             +        +A+   DS+L+ W+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 7e-09
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 4/123 (3%)

Query: 227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLA-SV 285
            R FV+G  D   +L+D   +     +F   E+ I A+   P+      G+         
Sbjct: 196 TRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254

Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL 345
                +L+          I S++   +  ++ +   D     WD           L  H 
Sbjct: 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGHD 312

Query: 346 NEV 348
           N V
Sbjct: 313 NRV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.5 bits (150), Expect = 2e-11
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 2/142 (1%)

Query: 188 VWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQ 247
             +L +   +         S          S    S       ++G+ D  ++++D S  
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-T 236

Query: 248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI 307
              +M+    +  ++ V        I        L   D +  + +          + S+
Sbjct: 237 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA-HEHFVTSL 295

Query: 308 ARHPTLPIIASCGLDSYLRFWD 329
             H T P + +  +D  ++ W+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 34/185 (18%), Positives = 54/185 (29%), Gaps = 24/185 (12%)

Query: 183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY 242
           G  +     DK  K+W  +             W          D     + +ND  VR++
Sbjct: 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ--DGTLIASCSNDQTVRVW 170

Query: 243 DT---------SAQRRPVMSFDFRE----------TPIKAVAEEPDSFNIYIGNGSGDLA 283
                         R  V    +            T  +          +  G+    + 
Sbjct: 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 230

Query: 284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ 343
             D+ TG  L   +G     +R +  H     I SC  D  LR WD K ++ +    L  
Sbjct: 231 MWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT--LNA 287

Query: 344 HLNEV 348
           H + V
Sbjct: 288 HEHFV 292

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (95), Expect = 1e-04
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348
              +  +  HP   ++ S   D+ ++ WD +T        LK H + V
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT--LKGHTDSV 62

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 5/139 (3%)

Query: 196 KIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD 255
           K W  +PP K +L     +  T   F         V+ + D  ++++D         +  
Sbjct: 1   KEWIPRPPEKYALSGHR-SPVTRVIFHP--VFSVMVSASEDATIKVWDYE-TGDFERTLK 56

Query: 256 FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI 315
                ++ ++ +     +   +    +   D +  + +    G    ++ S++  P    
Sbjct: 57  GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDH 115

Query: 316 IASCGLDSYLRFWDIKTRQ 334
           I S   D  ++ W+++T  
Sbjct: 116 IVSASRDKTIKMWEVQTGY 134

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 22/169 (13%)

Query: 180 GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQV 239
           G     V VWD +    +       ++  G        S  F    D +  V+G+ D  V
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTG--HKDSVYSVVFTR--DGQSVVSGSLDRSV 278

Query: 240 RLYDTSAQRRP-----------VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIR 288
           +L++                   +++   +  + +VA   +   I  G+    +   D +
Sbjct: 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338

Query: 289 TGKLLGCFIGKCSGSIRSIAR------HPTLPIIASCGLDSYLRFWDIK 331
           +G  L    G    S+ S+A        P   + A+   D   R W  K
Sbjct: 339 SGNPLLMLQG-HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 27/177 (15%), Positives = 51/177 (28%), Gaps = 19/177 (10%)

Query: 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248
                   +              +     +   +S  D +   AG+ D  VR++D+    
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 249 R------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS- 301
                     S    +  + +V    D  ++  G+    +   +++            S 
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 302 ----------GSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348
                       + S+A       I S   D  + FWD K+   L    L+ H N V
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM--LQGHRNSV 353

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 22/166 (13%), Positives = 47/166 (28%), Gaps = 21/166 (12%)

Query: 172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV 231
                 + G     + VWD++    I T                 +             V
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS---------LTSGMEL----KDNILV 231

Query: 232 AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGK 291
           +G  D  V+++D    +         +        + +   +   +  G +   D++TG+
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 291

Query: 292 LLGCFI----GKCSGSIRSIARHPTLPIIASCGLD----SYLRFWD 329
            +   +    G   G +  I    T  + A    +    + L   D
Sbjct: 292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 24/150 (16%), Positives = 40/150 (26%), Gaps = 22/150 (14%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245
           + VW+   CE + T         G                  R  V+G++D+ +RL+D  
Sbjct: 160 IKVWNTSTCEFVRTLN-------GHKRGIACLQY------RDRLVVSGSSDNTIRLWDIE 206

Query: 246 AQRR------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK 299
                                 K +        I + +    L          L   +  
Sbjct: 207 CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH 266

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWD 329
            SG +  +        I S   D  +  WD
Sbjct: 267 -SGRVFRLQFDEFQ--IVSSSHDDTILIWD 293

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.1 bits (99), Expect = 3e-05
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348
           G +     G  + +I +++       + S   + ++  WDI T      VF   H   +
Sbjct: 2   GSIDQVRYGH-NKAITALSSSADGKTLFSADAEGHINSWDISTGISN-RVFPDVHATMI 58

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 1/143 (0%)

Query: 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248
               K      +         I  P   TS AF +          +          + + 
Sbjct: 155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 214

Query: 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-SGSIRSI 307
               S+ F    +  V+  PD+  +  G+    +   ++         I    + S  + 
Sbjct: 215 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNS 274

Query: 308 ARHPTLPIIASCGLDSYLRFWDI 330
                   I S G DS ++FW++
Sbjct: 275 VIWLNETTIVSAGQDSNIKFWNV 297

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 9/79 (11%), Positives = 20/79 (25%), Gaps = 2/79 (2%)

Query: 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311
                 E+ + ++                 L +     G  +     K S S+ S     
Sbjct: 259 YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--KESSSVLSCDISV 316

Query: 312 TLPIIASCGLDSYLRFWDI 330
               I +   D     +++
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 7/56 (12%), Positives = 14/56 (25%)

Query: 301 SGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD 356
              I  I   P+  ++     D  L  +    +     +         +    F D
Sbjct: 11  KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID 66

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV 359
            +  + SI   P    + + G D  +  W+++TR+ +      +   + V   A +D  +
Sbjct: 250 LAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKN--FAKFNEDSVVKIACSDNIL 307

Query: 360 ANAAAD 365
             A +D
Sbjct: 308 CLATSD 313

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 8e-05
 Identities = 12/169 (7%), Positives = 34/169 (20%), Gaps = 11/169 (6%)

Query: 175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS----IDDHRKF 230
           K   +          D       +     P        P        +      +     
Sbjct: 191 KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVI--PLIPGSPNPTKLVPRSMTSEAGEYD 248

Query: 231 VAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTG 290
           +         +       R ++  +              +         G L   D++T 
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308

Query: 291 KLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           K+          ++  +        +     D  +  + ++  +    V
Sbjct: 309 KVTEV-----KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 17/158 (10%), Positives = 43/158 (27%), Gaps = 5/158 (3%)

Query: 203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIK 262
           P + +L     +  T   F    +    + G +D  +R+YD+   ++ ++     +  + 
Sbjct: 3   PQRTTLRGHMTSVITCLQF----EDNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVW 57

Query: 263 AVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD 322
           A+        +              +            +     I  +  +  I +   D
Sbjct: 58  ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117

Query: 323 SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA 360
           + L  W +     +     +     V          V 
Sbjct: 118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG 155

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)

Query: 252 MSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP 311
             F +  T + A+     S NI +          ++R+GKL+   I K +  I S+    
Sbjct: 275 RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG 334

Query: 312 TLPIIASCGLD--SYLRFWD 329
              ++A+   D  S+L   D
Sbjct: 335 KT-LVAAVEKDGQSFLEILD 353

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 8/66 (12%), Positives = 20/66 (30%)

Query: 265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY 324
              PD   I   +    +   ++ T K+            + +    T   + S   + +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 325 LRFWDI 330
           + F + 
Sbjct: 305 INFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 11/71 (15%), Positives = 29/71 (40%)

Query: 295 CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAF 354
                 SGS+  +   P    IAS   D  ++ W++ T ++   + +   + +      +
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291

Query: 355 ADKEVANAAAD 365
             + + + +A+
Sbjct: 292 TKQALVSISAN 302

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 260 PIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC-SGSIRSIARHPTLPIIAS 318
           PI   A   D   I I   + ++   +    K +     K  +G +  +   P    I +
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 319 CGLDSYLRFWD 329
           CG D     W 
Sbjct: 69  CGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 14/142 (9%), Positives = 40/142 (28%), Gaps = 10/142 (7%)

Query: 197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDF 256
           +  A      +          +  F++       VA  +D    L+   +    +     
Sbjct: 227 LADADKKMAVATLASETLPLLAVTFIT---ESSLVAAGHDCFPVLFTYDSAAGKLSFGGR 283

Query: 257 RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHP----T 312
            + P ++      +   +    + D  +    +             S+  I+        
Sbjct: 284 LDVPKQSSQRGLTARERF---QNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK 340

Query: 313 LPIIASCGLDSYLRFWDIKTRQ 334
                + G+D  +  WD+++ +
Sbjct: 341 CSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 303 SIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV 348
            I   A +     IA C  +  +  ++    + +    LK+H  +V
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQV 54

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 18/153 (11%), Positives = 37/153 (24%), Gaps = 15/153 (9%)

Query: 189 WDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR 248
           W + +  + W     P++      P             +   V   +  Q+ L D    +
Sbjct: 2   WGMPEMRESWKVLVKPEDR-----PKK---QLNDLDLPNLFSVTLRDAGQIALVDG-DSK 52

Query: 249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIA 308
           + V   D                 + +      +  +D+   +       K     RS+ 
Sbjct: 53  KIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE 111

Query: 309 RHPTL-----PIIASCGLDSYLRFWDIKTRQLL 336
                       IA           D +T +  
Sbjct: 112 SSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK 144

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 13/114 (11%), Positives = 27/114 (23%), Gaps = 4/114 (3%)

Query: 226 DHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV 285
           D            +   D   +   +   + R   +   +   +            L S 
Sbjct: 208 DIDPADPTAYRTGLLTMDL--ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 286 DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV 339
           D+     +         S  S+        +   G    L  +D +T +    V
Sbjct: 266 DLEKNASIKRV--PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 19/159 (11%), Positives = 34/159 (21%), Gaps = 26/159 (16%)

Query: 186 VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS 245
           + V D +K                             +      +        +   D  
Sbjct: 13  LVVIDTEKMAVDKVITIAD-------AGPTPMVPMV-APGGRIAYATVNKSESLVKIDLV 64

Query: 246 A----QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDL------------ASVDIRT 289
                 R  + + + R   +   A  PD   + I      L            A  D  T
Sbjct: 65  TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET 124

Query: 290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFW 328
                 F  +    I  +A       +   G D ++   
Sbjct: 125 LSRRKAF--EAPRQITMLAWARDGSKLYGLGRDLHVMDP 161

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 9/97 (9%), Positives = 35/97 (36%), Gaps = 1/97 (1%)

Query: 234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL 293
               +V+    + +   + +  ++     A  EE +   +  G+   ++    ++    +
Sbjct: 191 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 250

Query: 294 GCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI 330
              +      + ++        + S G D+ ++ W++
Sbjct: 251 IKALNAHKDGVNNLLWETP-STLVSSGADACIKRWNV 286

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 4/116 (3%)

Query: 179 FGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQ 238
           F     +    DL         K    ++      T        S  D          ++
Sbjct: 216 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKD--PNQIYGVLNR 273

Query: 239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG 294
           +  YD   QR+ + + +   T    VA +     +Y+G    DLA  +  T + + 
Sbjct: 274 LAKYDL-KQRKLIKAANLDHTYY-CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	430
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.8
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.79
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.79
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.64
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.63
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.55
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.44
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.41
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.26
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.17
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.16
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.06
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.05
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.01
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.98
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.95
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.91
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.81
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.81
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.8
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.75
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.7
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.67
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.61
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	98.53
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.49
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.44
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.42
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	98.37
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	98.31
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	98.31
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.18
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.07
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.89
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.87
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.67
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.64
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.62
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.59
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.55
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.18
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.75
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.58
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.5
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.35
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.77
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.57
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	95.54
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.36
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.12
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.88
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.01
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	93.34
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.32
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.31
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	92.63
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.23
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.96
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	83.66

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.4e-39  Score=285.03  Aligned_cols=289  Identities=13%  Similarity=0.195  Sum_probs=246.9

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      .....|.+|.+.|.+++  |  +|++++||+|+.||+|+|||+.+++.+..+.++        ...+.++.+.+..    
T Consensus         8 ~~~~~L~GH~~~I~~l~--~--sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h--------~~~V~~~~~~~~~----   71 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVI--F--HPVFSVMVSASEDATIKVWDYETGDFERTLKGH--------TDSVQDISFDHSG----   71 (317)
T ss_dssp             SCSCEEECCSSCEEEEE--E--CSSSSEEEEEESSSCEEEEETTTCCCCEEECCC--------SSCEEEEEECTTS----
T ss_pred             CccEEEcCCCCCeEEEE--E--cCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCC--------CCcEEEEeeeccc----
Confidence            34557889999965555  4  678899999999999999999999988887653        4577777766544    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                          ..++.+..++.+.++......         .......+...+.++.++|+++.+++++.|+.+++||+++++....
T Consensus        72 ----~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  138 (317)
T d1vyhc1          72 ----KLLASCSADMTIKLWDFQGFE---------CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT  138 (317)
T ss_dssp             ----SEEEEEETTSCCCEEETTSSC---------EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ----ccccccccccccccccccccc---------cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeE
Confidence                377888888888888754332         2222335678899999999999999999999999999999998888


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCC---------
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDS---------  270 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~---------  270 (430)
                      +..+.         ..+.+++|  ++++.+|++++.|+.|++|++.+.. ....+..|...+.++.|+|++         
T Consensus       139 ~~~~~---------~~~~~~~~--~~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  206 (317)
T d1vyhc1         139 FTGHR---------EWVRMVRP--NQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEAT  206 (317)
T ss_dssp             EECCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCC
T ss_pred             EccCC---------Ccceeeec--ccCCCEEEEEeCCCeEEEEeeccce-eeEEEecCCCCceEEEEeeccccceeeccc
Confidence            87654         66889999  8999999999999999999999865 578888899999999998753         


Q ss_pred             -----------CEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEE
Q 014154          271 -----------FNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       271 -----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                                 .++++++.|+.|++||+++++++..+.+| ...|.+++|+|++++|++++.||.|+|||+.+++++.. 
T Consensus       207 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-  284 (317)
T d1vyhc1         207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT-  284 (317)
T ss_dssp             SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEE-
T ss_pred             cceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC-CCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEE-
Confidence                       47899999999999999999999999998 89999999999999999999999999999999999988 


Q ss_pred             EeeccccceEEeeeccccccc-cccCCCCceEecC
Q 014154          340 FLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       340 ~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                       +.+| ...|++++|+|++++ ++++.|+.|++|+
T Consensus       285 -~~~h-~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         285 -LNAH-EHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             -EECC-SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             -EcCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence             6677 456799999999998 9999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-37  Score=280.66  Aligned_cols=311  Identities=12%  Similarity=0.112  Sum_probs=245.8

Q ss_pred             cCCCceEEEEccCCCC---C---cceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           21 DSLGLIKVIEARGEHG---G---VPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        21 ~~dg~i~vw~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      +.||.+.-..+.....   .   ..+.+..+ .|...|.+++|    +|+|++||+|+ ||.|+|||+.++.....+...
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~H~~~V~~v~f----s~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~   91 (337)
T d1gxra_          18 TADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTI----SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL   91 (337)
T ss_dssp             CSSSCEEECCCCTTSSSSTTCCSEEEEEEEE-CCSSCCCEEEE----CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE
T ss_pred             CCCCCEEeeccCCcceecCCCCCCceEEEEC-CCCCcEEEEEE----CCCCCEEEEEE-CCEEEEEEccCCcccceeEEe
Confidence            4556666665544211   1   11334444 58888665555    67889999997 899999999876544333221


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                         ....+.+.|.++.+.+..        ..+++++.++.+.+|++.....       .+......+...+.+++|+|++
T Consensus        92 ---~~~~h~~~I~~v~~s~dg--------~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~  153 (337)
T d1gxra_          92 ---DCLNRDNYIRSCKLLPDG--------CTLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDS  153 (337)
T ss_dssp             ---ECSCTTSBEEEEEECTTS--------SEEEEEESSSEEEEEECCCC---------EEEEEEECSSSCEEEEEECTTS
T ss_pred             ---eecCCCCcEEEEEEcCCC--------CEEEEeeccccccccccccccc-------cccccccccccccccccccccc
Confidence               122355688888886644        4889999999999999764321       2222233567889999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      .++++++.++.|++|++.+++.......+.         ..|.+++|  ++++..+++++.|+.|++||+++++. +..+
T Consensus       154 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~---------~~v~~l~~--s~~~~~~~~~~~d~~v~i~d~~~~~~-~~~~  221 (337)
T d1gxra_         154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHT---------DGASCIDI--SNDGTKLWTGGLDNTVRSWDLREGRQ-LQQH  221 (337)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEE-EEEE
T ss_pred             cccccccccccccccccccccccccccccc---------cccccccc--ccccccccccccccccccccccccee-eccc
Confidence            999999999999999999998888777654         67999999  89999999999999999999998653 4444


Q ss_pred             eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCc
Q 014154          255 DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQ  334 (430)
Q Consensus       255 ~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~  334 (430)
                       .|...|.+++|+|++++|++++.|+.|++||+++++.. ....| ...|++++|+|++++|++++.||.|++||+.+++
T Consensus       222 -~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~-~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~  298 (337)
T d1gxra_         222 -DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             -ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             -ccccceEEEEEcccccccceeccccccccccccccccc-ccccc-ccccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence             47789999999999999999999999999999988875 44566 8899999999999999999999999999999999


Q ss_pred             eeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCC
Q 014154          335 LLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       335 ~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      .+..+   .| ...|.+++|+|++++ ++++.|+.|+||+.
T Consensus       299 ~~~~~---~~-~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         299 SIFQS---KE-SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEE---EC-SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEEc---cC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            88764   24 345799999999998 88999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.7e-38  Score=280.44  Aligned_cols=276  Identities=14%  Similarity=0.170  Sum_probs=220.9

Q ss_pred             CCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCccccee
Q 014154           12 CPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAI   91 (430)
Q Consensus        12 ~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~   91 (430)
                      +|....+....++.|.+|++...     .....+.+|...|.+  +.+  +|+|++||+|+.||+|+|||+.++......
T Consensus        26 ~~~g~~l~~~~~~~v~i~~~~~~-----~~~~~~~~H~~~v~~--~~~--sp~g~~latg~~dg~i~iwd~~~~~~~~~~   96 (311)
T d1nr0a1          26 TPAGDKIQYCNGTSVYTVPVGSL-----TDTEIYTEHSHQTTV--AKT--SPSGYYCASGDVHGNVRIWDTTQTTHILKT   96 (311)
T ss_dssp             CTTSSEEEEEETTEEEEEETTCS-----SCCEEECCCSSCEEE--EEE--CTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             cCCCCEEEEEeCCEEEEEECCCC-----ceeEEEcCCCCCEEE--EEE--eCCCCeEeccccCceEeeeeeecccccccc
Confidence            45544444446778999999986     666778889988554  455  788999999999999999998655421110


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                                                                                      .+ ..|...|.+++|+
T Consensus        97 ----------------------------------------------------------------~~-~~~~~~v~~v~~s  111 (311)
T d1nr0a1          97 ----------------------------------------------------------------TI-PVFSGPVKDISWD  111 (311)
T ss_dssp             ----------------------------------------------------------------EE-ECSSSCEEEEEEC
T ss_pred             ----------------------------------------------------------------cc-ccccCcccccccc
Confidence                                                                            00 1345788999999


Q ss_pred             CCCCEEEEEeC--CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCC
Q 014154          172 ISEKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQR  248 (430)
Q Consensus       172 ~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~  248 (430)
                      |++++|++++.  +..+++|++++++....+..|.         ..|++++|  +|++. .|++|+.|+.|++||+++.+
T Consensus       112 ~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~---------~~v~~v~~--~~~~~~~l~sgs~d~~i~i~d~~~~~  180 (311)
T d1nr0a1         112 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA---------RAMNSVDF--KPSRPFRIISGSDDNTVAIFEGPPFK  180 (311)
T ss_dssp             TTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCS---------SCEEEEEE--CSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred             ccccccccccccccccccccccccccccccccccc---------cccccccc--cccceeeecccccccccccccccccc
Confidence            99999999886  4569999999988877776654         67999999  78877 58889999999999999855


Q ss_pred             cceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeee-------CCCCCCeEEEEecCCCCeEEEEeC
Q 014154          249 RPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFI-------GKCSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       249 ~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                       ....+..|...|+++.|+|++++|++++.|+.|++||+++++.+..+.       +| ...|++++|+|++++|++|+.
T Consensus       181 -~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~s~~~~~l~tgs~  258 (311)
T d1nr0a1         181 -FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH-SGSVFGLTWSPDGTKIASASA  258 (311)
T ss_dssp             -EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS-SSCEEEEEECTTSSEEEEEET
T ss_pred             -cccccccccccccccccCccccccccccccccccccccccccccccccccccccccc-cccccccccCCCCCEEEEEeC
Confidence             578888899999999999999999999999999999999988877664       34 788999999999999999999


Q ss_pred             CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCC
Q 014154          322 DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       322 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~  375 (430)
                      ||.|+|||+++++++.++.........+.++.|+++ .+++++.||.|++||.+
T Consensus       259 Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ-ALVSISANGFINFVNPE  311 (311)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS-CEEEEETTCCEEEEETT
T ss_pred             CCeEEEEECCCCcEEEEEECCCCccceEEEEEecCC-EEEEEECCCEEEEEeCC
Confidence            999999999999999885432222333455555543 23888899999999864

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-37  Score=284.94  Aligned_cols=322  Identities=18%  Similarity=0.134  Sum_probs=246.9

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ...+.+..++.+.+|+.... ......+....+|.+.|.+++|    +|+|++||+|+ |+.|+|||+.+++.+..+..+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~H~~~V~~l~f----s~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~  102 (388)
T d1erja_          29 PDALKKQTNDYYILYNPALP-REIDVELHKSLDHTSVVCCVKF----SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD  102 (388)
T ss_dssp             CTTSEEECSSCEEEECTTSC-CCEEEEEEEEEECSSCCCEEEE----CTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-
T ss_pred             ccccccCCCCcEEEeCCCCC-cceeeeeEeeCCCCCcEEEEEE----CCCCCEEEEEe-CCeEEEEEecccceEeeeccc
Confidence            34678888999999998764 2222222233359999776665    66888999986 899999999999888777652


Q ss_pred             CC----------CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCc
Q 014154           95 GD----------SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGT  164 (430)
Q Consensus        95 ~~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~  164 (430)
                      ..          .....+...|.++.+.+..        ..+++++.+|.+++|+.....        .+..+ ..|...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~--------~~l~s~~~dg~v~i~~~~~~~--------~~~~~-~~h~~~  165 (388)
T d1erja_         103 SAANKDPENLNTSSSPSSDLYIRSVCFSPDG--------KFLATGAEDRLIRIWDIENRK--------IVMIL-QGHEQD  165 (388)
T ss_dssp             ----------------CCCCBEEEEEECTTS--------SEEEEEETTSCEEEEETTTTE--------EEEEE-CCCSSC
T ss_pred             ccccccccccccccccCCCCCEEEEEECCCC--------Ccceecccccccccccccccc--------ccccc-cccccc
Confidence            11          1122455667777776543        489999999999999865332        33333 357889


Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEEC
Q 014154          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  244 (430)
                      |.++++++++..+++++.++.+++||+.+.........+          ....++.+. ++++.+|++++.|+.|++||.
T Consensus       166 v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~-~~~~~~l~~~~~d~~i~i~~~  234 (388)
T d1erja_         166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE----------DGVTTVAVS-PGDGKYIAAGSLDRAVRVWDS  234 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS----------SCEEEEEEC-STTCCEEEEEETTSCEEEEET
T ss_pred             ccccccccccccccccccceeeeeeeccccccccccccc----------ccccccccc-CCCCCeEEEEcCCCeEEEeec
Confidence            999999999999999999999999999988777665543          334555554 678899999999999999999


Q ss_pred             CCCCcceEE-------EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE------------EeeeeCCCCCCeE
Q 014154          245 SAQRRPVMS-------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL------------LGCFIGKCSGSIR  305 (430)
Q Consensus       245 ~~~~~~~~~-------~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~------------~~~~~~~~~~~v~  305 (430)
                      .++.. ...       ..+|...|.+++|+|++++|++++.|+.|++||+++++.            ......| ...|.
T Consensus       235 ~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~  312 (388)
T d1erja_         235 ETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH-KDFVL  312 (388)
T ss_dssp             TTCCE-EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECC-SSCEE
T ss_pred             ccCcc-ceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccc-cceEE
Confidence            98653 333       345788999999999999999999999999999986543            3344455 78999


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEee------eccccccc-cccCCCCceEecCCC
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDS------AFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~------~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      +++|+|++++|++|+.||.|++||+.+++++.+  +.+|. ..|.++      +|+|++.+ ++++.||.|++|+..
T Consensus       313 ~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~--l~~H~-~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM--LQGHR-NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTCCEEEE--EECCS-SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEE--EeCCC-CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999999999999999999999988  66784 445665      47889988 899999999999864

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=272.10  Aligned_cols=269  Identities=11%  Similarity=0.072  Sum_probs=214.8

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc--cceeec
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL--RVAISN   93 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~--~~~~~~   93 (430)
                      .|+||+ ||.|+|||+..+............+|...  +.+++|  +|+|++|++|+.||.|++||+.....  ...+..
T Consensus        65 ~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~--I~~v~~--s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  139 (337)
T d1gxra_          65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNY--IRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS  139 (337)
T ss_dssp             EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSB--EEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC
T ss_pred             EEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCc--EEEEEE--cCCCCEEEEeeccccccccccccccccccccccc
Confidence            466665 89999999987522222233345567777  455555  78899999999999999999875432  333332


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                              +...+..+.+.+..        ..+++++.++.+.+|++...         ........+...|.+++|+++
T Consensus       140 --------~~~~v~~~~~~~~~--------~~l~s~~~d~~i~~~~~~~~---------~~~~~~~~~~~~v~~l~~s~~  194 (337)
T d1gxra_         140 --------SAPACYALAISPDS--------KVCFSCCSDGNIAVWDLHNQ---------TLVRQFQGHTDGASCIDISND  194 (337)
T ss_dssp             --------SSSCEEEEEECTTS--------SEEEEEETTSCEEEEETTTT---------EEEEEECCCSSCEEEEEECTT
T ss_pred             --------cccccccccccccc--------cccccccccccccccccccc---------ccccccccccccccccccccc
Confidence                    23355555554332        48888999999999987532         233333457789999999999


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      +..+++++.|+.|++||+++++.+..+..          ...|.+++|  +|++.+|++++.|+.|++||++...  ...
T Consensus       195 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~----------~~~i~~l~~--~~~~~~l~~~~~d~~i~i~d~~~~~--~~~  260 (337)
T d1gxra_         195 GTKLWTGGLDNTVRSWDLREGRQLQQHDF----------TSQIFSLGY--CPTGEWLAVGMESSNVEVLHVNKPD--KYQ  260 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEEC----------SSCEEEEEE--CTTSSEEEEEETTSCEEEEETTSSC--EEE
T ss_pred             ccccccccccccccccccccceeeccccc----------ccceEEEEE--cccccccceeccccccccccccccc--ccc
Confidence            99999999999999999999988776543          267999999  8999999999999999999999755  456


Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEEC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDI  330 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~  330 (430)
                      ...|...|++++|+|++++|++++.|+.|++||+.+++.+..+. | ...|.+++|+|++++|++|+.||.|+|||+
T Consensus       261 ~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~-~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-E-SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C-SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-C-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            67789999999999999999999999999999999999987766 4 689999999999999999999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.2e-36  Score=267.60  Aligned_cols=293  Identities=12%  Similarity=0.088  Sum_probs=226.6

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      ++.+.+.+|...|.+++  +  +|+|++|++|+.||+|++||+.+++.+..+..       .+...+.++.+.+.     
T Consensus         3 ~~~~~~~GH~~~V~~l~--~--s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-------~h~~~v~~v~~~~~-----   66 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALS--S--SADGKTLFSADAEGHINSWDISTGISNRVFPD-------VHATMITGIKTTSK-----   66 (299)
T ss_dssp             EEEEEECCCSSCEEEEE--E--CTTSSEEEEEETTSCEEEEETTTCCEEECSSC-------SCSSCEEEEEECTT-----
T ss_pred             ccceEcCCCCCCcEEEE--E--CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcC-------CCCCcEEEEEeecc-----
Confidence            57788999999966555  4  67889999999999999999999887766532       24457877776543     


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                          +.+++++.++.+++|.+.....     . ........+...+.+++++|++.++++++ ++.+.+|+....  ...
T Consensus        67 ----g~~~~~~~d~~v~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~--~~~  133 (299)
T d1nr0a2          67 ----GDLFTVSWDDHLKVVPAGGSGV-----D-SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL--TEV  133 (299)
T ss_dssp             ----SCEEEEETTTEEEEECSSSSSS-----C-TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE--EEE
T ss_pred             ----ceeecccceeeEEEeccCCccc-----c-ccccccccccccccccccccccccccccc-cccccccccccc--ccc
Confidence                4678888899999998653321     1 11112224567788999999998877665 458999996432  222


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (430)
                      ...           ..+.+++|  +|++.+|++|+.|+.|++||+++..........|...|++++|+|++++|++++.|
T Consensus       134 ~~~-----------~~~~~~~~--s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  200 (299)
T d1nr0a2         134 PIS-----------YNSSCVAL--SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS  200 (299)
T ss_dssp             ECS-----------SCEEEEEE--CTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccc-----------cccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            222           34788899  89999999999999999999987553334456788999999999999999999999


Q ss_pred             CcEEEEEccCCeEEe---eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          280 GDLASVDIRTGKLLG---CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~---~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      +.|++||+.++..+.   .+.+| ...|++++|+|++.+|++|+.||.|++||++++.....+....|....+..+.|.+
T Consensus       201 ~~i~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  279 (299)
T d1nr0a2         201 RKVIPYSVANNFELAHTNSWTFH-TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN  279 (299)
T ss_dssp             SCEEEEEGGGTTEESCCCCCCCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred             ccccccccccccccccccccccc-ccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC
Confidence            999999998876543   44566 88999999999999999999999999999998776555434555556677776655


Q ss_pred             cccccccCCCCceEecCCC
Q 014154          357 KEVANAAADAPMLEIQNGN  375 (430)
Q Consensus       357 ~g~~~~~~~d~~i~~~~~~  375 (430)
                      +..+++++.|+.|++|+.+
T Consensus       280 ~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         280 ETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TTEEEEEETTSCEEEEECC
T ss_pred             CCEEEEEeCCCEEEEEecc
Confidence            5445999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.8e-35  Score=263.07  Aligned_cols=293  Identities=15%  Similarity=0.143  Sum_probs=235.4

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      +...+|.+|.+.|.+++  |  +|++++||+|+.||+|+|||+.+++.+..+..+        ...+.++.+.+..    
T Consensus        46 ~~~~tL~GH~~~I~~l~--~--s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~--------~~~v~~v~~~~~~----  109 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMH--W--GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR--------SSWVMTCAYAPSG----  109 (340)
T ss_dssp             CEEEEECCCSSCEEEEE--E--CTTSSEEEEEETTTEEEEEETTTTEEEEEEECS--------CSCEEEEEECTTS----
T ss_pred             eeeEEECCCCCCEEEEE--E--CCCCCEEEEEECCCceeeeecccceeEEEEecc--------cccEEeeEeeccc----
Confidence            45678999999966554  4  678889999999999999999999988887653        3578888776544    


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                          ..+++++.++.+.+|.......    .......+. .+..... .........++....+.....+..........
T Consensus       110 ----~~l~~~~~d~~i~~~~~~~~~~----~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (340)
T d1tbga_         110 ----NYVACGGLDNICSIYNLKTREG----NVRVSRELA-GHTGYLS-CCRFLDDNQIVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             ----SEEEEEETTCCEEEEESSSSCS----CCCEEEEEC-CCSSCEE-EEEEEETTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             ----eeeeeecccceeeccccccccc----ccccceecc-ccccccc-cccccccccccccccccccccccccccccccc
Confidence                4899999999999998654332    111111111 2233333 33334566778888899999999887666555


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (430)
                      .....         ..+....+  .+...++++++.|+.|++||++++. ++..+.+|...|++++|+|++++|++|+.|
T Consensus       180 ~~~~~---------~~~~~~~~--~~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d  247 (340)
T d1tbga_         180 FTGHT---------GDVMSLSL--APDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDD  247 (340)
T ss_dssp             EECCS---------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccc---------eeEeeecc--ccccceeEEeecCceEEEEECCCCc-EEEEEeCCCCCeEEEEECCCCCEEEEEeCC
Confidence            44433         55777777  7889999999999999999999865 588899999999999999999999999999


Q ss_pred             CcEEEEEccCCeEEeeeeC-CCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccc
Q 014154          280 GDLASVDIRTGKLLGCFIG-KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKE  358 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g  358 (430)
                      +.|++||++..+.+..+.. .+...|.+++|+|++.+|++|+.||.|++||+.+++++..  +.+| ...|++++|+|++
T Consensus       248 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~--~~~H-~~~V~~l~~s~d~  324 (340)
T d1tbga_         248 ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGV--LAGH-DNRVSCLGVTDDG  324 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEE--ECCC-SSCEEEEEECTTS
T ss_pred             CeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEE--EcCC-CCCEEEEEEeCCC
Confidence            9999999999988766642 2267799999999999999999999999999999999988  6788 4567999999999


Q ss_pred             cc-cccCCCCceEecC
Q 014154          359 VA-NAAADAPMLEIQN  373 (430)
Q Consensus       359 ~~-~~~~~d~~i~~~~  373 (430)
                      .+ ++++.||.|++|+
T Consensus       325 ~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         325 MAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEETTSCEEEEC
T ss_pred             CEEEEEccCCEEEEeC
Confidence            98 8899999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=268.24  Aligned_cols=321  Identities=9%  Similarity=0.091  Sum_probs=235.5

Q ss_pred             CCCCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcc
Q 014154            8 ECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDL   87 (430)
Q Consensus         8 ~~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~   87 (430)
                      +|....+..|+||+.||+|+|||+.++     +++..+.+|...|..++++    |+ .+|++|+.||.|++|++.....
T Consensus        17 tc~~~~~~~l~tgs~Dg~i~vWd~~~~-----~~~~~l~~H~~~V~~l~~s----~~-~~l~s~s~D~~i~iw~~~~~~~   86 (355)
T d1nexb2          17 TCLQFEDNYVITGADDKMIRVYDSINK-----KFLLQLSGHDGGVWALKYA----HG-GILVSGSTDRTVRVWDIKKGCC   86 (355)
T ss_dssp             EEEEEETTEEEEEETTTEEEEEETTTT-----EEEEEEECCSSCEEEEEEE----TT-TEEEEEETTCCEEEEETTTTEE
T ss_pred             EEEEECCCEEEEEeCCCeEEEEECCCC-----cEEEEEECCCCCEEEEEEc----CC-CEEEEEeccccccccccccccc
Confidence            454445568999999999999999988     8889999999997766664    33 4799999999999999987776


Q ss_pred             cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcccc--------------CCCcc
Q 014154           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE--------------SSCST  153 (430)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~--------------~~~~~  153 (430)
                      .........       ........+....       ..+++++.++.+++|++........              .....
T Consensus        87 ~~~~~~~~~-------~~~~~~~~~~~~~-------~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (355)
T d1nexb2          87 THVFEGHNS-------TVRCLDIVEYKNI-------KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY  152 (355)
T ss_dssp             EEEECCCSS-------CEEEEEEEEETTE-------EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTT
T ss_pred             ccccccccc-------ccccccccccccc-------ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccc
Confidence            554433111       1111122222222       4788999999999999865432100              00001


Q ss_pred             eEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEE
Q 014154          154 VKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAG  233 (430)
Q Consensus       154 i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  233 (430)
                      .......+...+.  .+.+++++++++..|+.|++||+.+++.+.....+.         ..+.++.|  ++++.+++++
T Consensus       153 ~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~  219 (355)
T d1nexb2         153 FVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT---------DRIYSTIY--DHERKRCISA  219 (355)
T ss_dssp             EEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS---------SCEEEEEE--ETTTTEEEEE
T ss_pred             eeeeeeecccccc--ccccccceeeeecccceeeeeecccccceeeeeccc---------cccccccc--cccceeeecc
Confidence            1111112222333  345578999999999999999999998888776654         56788888  8899999999


Q ss_pred             eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEE-EecCC
Q 014154          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSI-ARHPT  312 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i-~~~~~  312 (430)
                      +.|+.|++||+.++. ++..+.+|...|.++++++  ++|++|+.||.|++||++++.....  .| ...+.++ .++++
T Consensus       220 ~~d~~i~i~d~~~~~-~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~--~~-~~~~~~~~~~~~~  293 (355)
T d1nexb2         220 SMDTTIRIWDLENGE-LMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS--YH-HTNLSAITTFYVS  293 (355)
T ss_dssp             ETTSCEEEEETTTCC-EEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEE--EE-CTTCCCCCEEEEC
T ss_pred             cccceEEeeeccccc-ccccccccccccccccccc--ceeeeeecccccccccccccceecc--cc-cCCceEEEEEcCC
Confidence            999999999999865 5888999999999999875  5999999999999999998876544  44 3344444 56677


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCC
Q 014154          313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      +.+|++| .|+.|+|||+++++++... +.+| ...|++++|+|+..+++++.||.+.||-.
T Consensus       294 ~~~l~~g-~d~~i~vwd~~tg~~~~~~-~~~~-~~~V~~v~~~~~~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         294 DNILVSG-SENQFNIYNLRSGKLVHAN-ILKD-ADQIWSVNFKGKTLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             SSEEEEE-ETTEEEEEETTTCCBCCSC-TTTT-CSEEEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred             CCEEEEE-eCCEEEEEECCCCCEEEEE-ecCC-CCCEEEEEEcCCeEEEEEECCCcEEEEEE
Confidence            7766665 5899999999999988653 4566 55679999999865588889998776643

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-35  Score=259.89  Aligned_cols=270  Identities=11%  Similarity=0.138  Sum_probs=225.2

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      -.|+||+.||+|+|||+.++     +++..+.+|...|.  ++.+  +|++.+++++..++.+.+|+....+....+.. 
T Consensus        30 ~~l~s~s~Dg~i~iWd~~~~-----~~~~~~~~h~~~V~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   99 (317)
T d1vyhc1          30 SVMVSASEDATIKVWDYETG-----DFERTLKGHTDSVQ--DISF--DHSGKLLASCSADMTIKLWDFQGFECIRTMHG-   99 (317)
T ss_dssp             SEEEEEESSSCEEEEETTTC-----CCCEEECCCSSCEE--EEEE--CTTSSEEEEEETTSCCCEEETTSSCEEECCCC-
T ss_pred             CEEEEEeCCCeEEEEECCCC-----CEEEEEeCCCCcEE--EEee--eccccccccccccccccccccccccccccccc-
Confidence            46889999999999999987     77888899998854  4555  67888999999999999999877765555443 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                             +...+..+.+.+..        ..+++++.++.+.+|++....        .+..+. .+...+.+++++|++
T Consensus       100 -------~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~  155 (317)
T d1vyhc1         100 -------HDHNVSSVSIMPNG--------DHIVSASRDKTIKMWEVQTGY--------CVKTFT-GHREWVRMVRPNQDG  155 (317)
T ss_dssp             -------CSSCEEEEEECSSS--------SEEEEEETTSEEEEEETTTCC--------EEEEEE-CCSSCEEEEEECTTS
T ss_pred             -------ccccceeeeccCCC--------ceEEeeccCcceeEeecccce--------eeeEEc-cCCCcceeeecccCC
Confidence                   23455555554433        488999999999999975332        444444 567889999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee------------------cCCCCEEEEEeCC
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS------------------IDDHRKFVAGTND  236 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~~~~l~s~~~d  236 (430)
                      ++|++++.|+.|++|++.++.....+..+.         ..+.++.|.+                  ...+.++++++.|
T Consensus       156 ~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  226 (317)
T d1vyhc1         156 TLIASCSNDQTVRVWVVATKECKAELREHR---------HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  226 (317)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCS---------SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             CEEEEEeCCCeEEEEeeccceeeEEEecCC---------CCceEEEEeeccccceeeccccceeeeeccCCceeEeccCC
Confidence            999999999999999999998888877654         4455555521                  2235679999999


Q ss_pred             CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE
Q 014154          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII  316 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  316 (430)
                      +.|++||+++++ ++..+.+|...|.+++|+|++++|++|+.||.|++||+++++++.++.+| ...|++++|+|++++|
T Consensus       227 ~~i~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~V~~~~~s~~~~~l  304 (317)
T d1vyhc1         227 KTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH-EHFVTSLDFHKTAPYV  304 (317)
T ss_dssp             SEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-SSCEEEEEECSSSSCE
T ss_pred             CEEEEEECCCCc-EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEE
Confidence            999999999865 58889999999999999999999999999999999999999999999998 8999999999999999


Q ss_pred             EEEeCCCcEEEEE
Q 014154          317 ASCGLDSYLRFWD  329 (430)
Q Consensus       317 ~s~~~dg~i~iwd  329 (430)
                      ++|+.||+|+|||
T Consensus       305 ~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         305 VTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEETTSEEEEEC
T ss_pred             EEEeCCCeEEEeC
Confidence            9999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-34  Score=263.52  Aligned_cols=288  Identities=17%  Similarity=0.211  Sum_probs=215.7

Q ss_pred             cccCCCCC-CCc-ceeeecCCCceEEEEccCCCCCcceeeeecCCCC----------------CCcceeeeeecCCCCCc
Q 014154            5 TTLECPGC-PPL-RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH----------------SSNCVLAASIDDSQNDP   66 (430)
Q Consensus         5 ~~~~~~~~-~~~-~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~p~g~   66 (430)
                      ..++|... |.. .|++| .|+.|+|||+.++     +.+..+..+.                ....+.+++|  +|+|+
T Consensus        63 ~~V~~l~fs~dg~~lasg-~d~~i~iW~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~--s~~~~  134 (388)
T d1erja_          63 SVVCCVKFSNDGEYLATG-CNKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCF--SPDGK  134 (388)
T ss_dssp             SCCCEEEECTTSSEEEEE-CBSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEE--CTTSS
T ss_pred             CcEEEEEECCCCCEEEEE-eCCeEEEEEeccc-----ceEeeecccccccccccccccccccCCCCCEEEEEE--CCCCC
Confidence            34444443 333 45555 5999999999886     4444443321                1222555666  78999


Q ss_pred             eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcc
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVS  146 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  146 (430)
                      +|++|+.||.|++||...++.+..+.++        ...+..+.+....        ..+++++.++.+.+|++....  
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h--------~~~v~~~~~~~~~--------~~~~~~~~~~~i~~~d~~~~~--  196 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIVMILQGH--------EQDIYSLDYFPSG--------DKLVSGSGDRTVRIWDLRTGQ--  196 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCC--------SSCEEEEEECTTS--------SEEEEEETTSEEEEEETTTTE--
T ss_pred             cceecccccccccccccccccccccccc--------ccccccccccccc--------ccccccccceeeeeeeccccc--
Confidence            9999999999999999988877776543        3467766665543        488899999999999865322  


Q ss_pred             ccCCCcceEEeeecCCCceEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecC
Q 014154          147 AESSCSTVKSWNVCASGTIAFSKVDI-SEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSID  225 (430)
Q Consensus       147 ~~~~~~~i~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  225 (430)
                            .+.  ...+.....++.+.+ ++++|++++.|+.|++|++.++.....+......  ...|...|.+++|  +|
T Consensus       197 ------~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~--s~  264 (388)
T d1erja_         197 ------CSL--TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES--GTGHKDSVYSVVF--TR  264 (388)
T ss_dssp             ------EEE--EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC--------CCCSSCEEEEEE--CT
T ss_pred             ------ccc--ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeecccccc--ccCCCCCEEEEEE--CC
Confidence                  222  222334455555554 8899999999999999999998887776543211  1224578999999  89


Q ss_pred             CCCEEEEEeCCCcEEEEECCCCCc-----------ceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEe
Q 014154          226 DHRKFVAGTNDHQVRLYDTSAQRR-----------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLG  294 (430)
Q Consensus       226 ~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~  294 (430)
                      ++.+|++++.|+.|++||+++...           .......|...|.+++|+|++++|++|+.||.|++||+++++++.
T Consensus       265 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~  344 (388)
T d1erja_         265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL  344 (388)
T ss_dssp             TSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence            999999999999999999976432           234456688899999999999999999999999999999999999


Q ss_pred             eeeCCCCCCeEEEEe------cCCCCeEEEEeCCCcEEEEECC
Q 014154          295 CFIGKCSGSIRSIAR------HPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       295 ~~~~~~~~~v~~i~~------~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      ++.+| ...|.++++      +|++.+|++|+.||+|+||+++
T Consensus       345 ~l~~H-~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         345 MLQGH-RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEECC-SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEeCC-CCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99998 899999874      6789999999999999999985

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-34  Score=256.36  Aligned_cols=304  Identities=14%  Similarity=0.190  Sum_probs=231.1

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      ..+|+||+.||+|+|||+.++     +++..+.+|...|..++++    |  ++|++|+.|+.+++|+............
T Consensus        27 g~~l~sgs~Dg~i~vWd~~~~-----~~~~~~~~h~~~V~~v~~~----~--~~l~s~s~D~~~~~~~~~~~~~~~~~~~   95 (342)
T d2ovrb2          27 GNRIVSGSDDNTLKVWSAVTG-----KCLRTLVGHTGGVWSSQMR----D--NIIISGSTDRTLKVWNAETGECIHTLYG   95 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTC-----CEEEECCCCSSCEEEEEEE----T--TEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             CCEEEEEeCCCeEEEEECCCC-----CEEEEEeCCCCCEEEEEeC----C--Cccccceecccccccccccccceecccc
Confidence            357999999999999999988     7888999999986655553    3  3899999999999999876654443332


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                      .        ...+.....   ..       ..+..+..++.+.+|+.....        ....+..   .........+.
T Consensus        96 ~--------~~~~~~~~~---~~-------~~~~~~~~d~~i~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~  146 (342)
T d2ovrb2          96 H--------TSTVRCMHL---HE-------KRVVSGSRDATLRVWDIETGQ--------CLHVLMG---HVAAVRCVQYD  146 (342)
T ss_dssp             C--------SSCEEEEEE---ET-------TEEEEEETTSEEEEEESSSCC--------EEEEEEC---CSSCEEEEEEC
T ss_pred             c--------ceeEeeeec---cc-------ccccccccceeEEEeeccccc--------ceeeeec---ccccceeeccc
Confidence            1        112221111   11       467778888888888865332        2222221   11122334456


Q ss_pred             CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEE
Q 014154          174 EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       174 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  253 (430)
                      ...+++++.|+.|++||+.....+..+..+.         ..+....+    ++.+|++++.||.|++||++.++ ++..
T Consensus       147 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~----~~~~l~s~~~dg~i~~~d~~~~~-~~~~  212 (342)
T d2ovrb2         147 GRRVVSGAYDFMVKVWDPETETCLHTLQGHT---------NRVYSLQF----DGIHVVSGSLDTSIRVWDVETGN-CIHT  212 (342)
T ss_dssp             SSCEEEEETTSCEEEEEGGGTEEEEEECCCS---------SCEEEEEE----CSSEEEEEETTSCEEEEETTTCC-EEEE
T ss_pred             cceeeeecCCCeEEEeecccceeeEEEcCcc---------cccccccC----CCCEEEEEeCCCeEEEeecccce-eeeE
Confidence            7788899999999999999998888887764         33444444    78899999999999999999865 5888


Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCC--CCCeEEEEecCCCCeEEEEeCCCcEEEEECC
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKC--SGSIRSIARHPTLPIIASCGLDSYLRFWDIK  331 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~  331 (430)
                      +..|...+.++++++  ++|++++.|+.|++||+...+....+..+.  ...+.++.+  ++.++++|+.||.|+|||++
T Consensus       213 ~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         213 LTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             ECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred             ecccccceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECC
Confidence            899999999888765  599999999999999999998887777542  456666666  55689999999999999999


Q ss_pred             CCceeeEEEe---eccccceEEeeeccccccc-cccCCCCc----eEecCCCC
Q 014154          332 TRQLLSAVFL---KQHLNEVVFDSAFADKEVA-NAAADAPM----LEIQNGND  376 (430)
Q Consensus       332 ~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~-~~~~~d~~----i~~~~~~~  376 (430)
                      +++++..+..   .+| ...|++++|+|++.+ ++++.||+    |++||++.
T Consensus       289 tg~~i~~~~~~~~~~~-~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         289 TGEFIRNLVTLESGGS-GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TCCEEEEEEECTTGGG-TCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEecccCCCC-CCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999988642   234 566899999999998 88888885    99999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.5e-34  Score=255.57  Aligned_cols=271  Identities=14%  Similarity=0.176  Sum_probs=214.4

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..|+||+.||+|+|||+.++     +.+..+..|...+.  +++|  +|+++++++|+.|+.+.+|+.............
T Consensus        68 ~~l~sgs~Dg~v~iWd~~~~-----~~~~~~~~~~~~v~--~v~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~  138 (340)
T d1tbga_          68 RLLVSASQDGKLIIWDSYTT-----NKVHAIPLRSSWVM--TCAY--APSGNYVACGGLDNICSIYNLKTREGNVRVSRE  138 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTT-----EEEEEEECSCSCEE--EEEE--CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEE
T ss_pred             CEEEEEECCCceeeeecccc-----eeEEEEecccccEE--eeEe--eccceeeeeecccceeeccccccccccccccee
Confidence            46899999999999999998     78888888988855  4555  778899999999999999998655433222110


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                          ...+..... .......        ..+.....+.....+.....         ............+....+.+..
T Consensus       139 ----~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  196 (340)
T d1tbga_         139 ----LAGHTGYLS-CCRFLDD--------NQIVTSSGDTTCALWDIETG---------QQTTTFTGHTGDVMSLSLAPDT  196 (340)
T ss_dssp             ----ECCCSSCEE-EEEEEET--------TEEEEEETTTEEEEEETTTT---------EEEEEEECCSSCEEEEEECTTS
T ss_pred             ----ccccccccc-ccccccc--------cccccccccccccccccccc---------cccccccccceeEeeecccccc
Confidence                001112222 2222221        35566666666666553321         2222333456778899999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEE
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSF  254 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  254 (430)
                      .++++++.|+.|++||+++++.+..+..|.         ..|++++|  +|++.+|++|+.|+.|++||++.... ...+
T Consensus       197 ~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~---------~~i~~v~~--~p~~~~l~s~s~d~~i~~~~~~~~~~-~~~~  264 (340)
T d1tbga_         197 RLFVSGACDASAKLWDVREGMCRQTFTGHE---------SDINAICF--FPNGNAFATGSDDATCRLFDLRADQE-LMTY  264 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTTEEEEEECCCS---------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEE-EEEE
T ss_pred             ceeEEeecCceEEEEECCCCcEEEEEeCCC---------CCeEEEEE--CCCCCEEEEEeCCCeEEEEeeccccc-cccc
Confidence            999999999999999999999999888765         77999999  89999999999999999999997553 4444


Q ss_pred             --eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEE
Q 014154          255 --DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWD  329 (430)
Q Consensus       255 --~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd  329 (430)
                        ..+...|.+++|+|++++|++|+.||.|++||+.+++++..+.+| ..+|++++|+|++.+|++|+.||.|+|||
T Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H-~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         265 SHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             ccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence              345678999999999999999999999999999999999999998 89999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.7e-33  Score=255.50  Aligned_cols=287  Identities=11%  Similarity=0.042  Sum_probs=209.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      ..+++|+.||.|+||++..+   ....+..+.+|...|..++|    +|++++|++|+.|++|+|||+.++.....+.. 
T Consensus        20 ~~la~~~~~~~i~iw~~~~~---~~~~~~~l~gH~~~V~~l~f----sp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-   91 (371)
T d1k8kc_          20 TQIAICPNNHEVHIYEKSGN---KWVQVHELKEHNGQVTGVDW----APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI-   91 (371)
T ss_dssp             SEEEEECSSSEEEEEEEETT---EEEEEEEEECCSSCEEEEEE----ETTTTEEEEEETTSCEEEEEEETTEEEEEEEC-
T ss_pred             CEEEEEeCCCEEEEEECCCC---CEEEEEEecCCCCCEEEEEE----CCCCCEEEEEECCCeEEEEeeccccccccccc-
Confidence            46778999999999999874   22356778899999665554    56888999999999999999987664443321 


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                           ..+...+.++.+.+..        ..+++++.++.+.+|.+.....     ..........+...|.+++|+|++
T Consensus        92 -----~~~~~~v~~i~~~p~~--------~~l~~~s~d~~i~i~~~~~~~~-----~~~~~~~~~~~~~~v~~v~~~p~~  153 (371)
T d1k8kc_          92 -----LRINRAARCVRWAPNE--------KKFAVGSGSRVISICYFEQEND-----WWVCKHIKKPIRSTVLSLDWHPNS  153 (371)
T ss_dssp             -----CCCSSCEEEEEECTTS--------SEEEEEETTSSEEEEEEETTTT-----EEEEEEECTTCCSCEEEEEECTTS
T ss_pred             -----cccccccccccccccc--------ccceeecccCcceeeeeecccc-----cccccccccccccccccccccccc
Confidence                 2244578877775543        4899999999999999875432     011222233467889999999999


Q ss_pred             CEEEEEeCCCeEEEEECCCCeeeEeeCCC-------CC--CCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154          175 KFSLFGGKGVEVNVWDLDKCEKIWTAKPP-------PK--NSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       175 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  245 (430)
                      .+|++|+.|++|++|++............       ..  ......+...|.+++|  +|++++|++++.|+.|++||+.
T Consensus       154 ~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCF--SANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEE--CSSSSEEEEEETTTEEEEEEGG
T ss_pred             cceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEe--ecccccccccccCCcceEEeee
Confidence            99999999999999998653211110000       00  0001123477999999  8999999999999999999999


Q ss_pred             CCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC--CeEEee----------------------------
Q 014154          246 AQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT--GKLLGC----------------------------  295 (430)
Q Consensus       246 ~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~--~~~~~~----------------------------  295 (430)
                      .+. .+..+..|..+|.+++|+|++.+|++| .|+.+++|....  +.....                            
T Consensus       232 ~~~-~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (371)
T d1k8kc_         232 KKM-AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKAS  309 (371)
T ss_dssp             GTT-EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-
T ss_pred             ccc-ceeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeE
Confidence            865 588889999999999999999877765 477766665432  221100                            


Q ss_pred             ----------e-eCCCCCCeEEEEecCCC----CeEEEEeCCCcEEEEECCC
Q 014154          296 ----------F-IGKCSGSIRSIARHPTL----PIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       296 ----------~-~~~~~~~v~~i~~~~~~----~~l~s~~~dg~i~iwd~~~  332 (430)
                                + .. |...|+++++.+.+    ..|+|+|.||.|+|||+++
T Consensus       310 ~~~~~~~~~~~~~~-H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         310 SEGSAAAGAGLDSL-HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             --------CCCSSS-SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             Eeccccccceeccc-ccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                      0 01 37789999998754    3589999999999999865

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.4e-33  Score=254.80  Aligned_cols=285  Identities=9%  Similarity=0.090  Sum_probs=216.7

Q ss_pred             CCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc--ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEE
Q 014154           50 SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD--LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLL  127 (430)
Q Consensus        50 ~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  127 (430)
                      .+|+++  +|  +|+|++||+|+.||.|+|||+.+++  .+..+.+        |.+.|.++.+.+..        ..++
T Consensus         8 ~pIt~~--~~--s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g--------H~~~V~~l~fsp~~--------~~l~   67 (371)
T d1k8kc_           8 EPISCH--AW--NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE--------HNGQVTGVDWAPDS--------NRIV   67 (371)
T ss_dssp             SCCCEE--EE--CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC--------CSSCEEEEEEETTT--------TEEE
T ss_pred             CCeEEE--EE--CCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC--------CCCCEEEEEECCCC--------CEEE
Confidence            555544  45  7788999999999999999997765  3444444        45688888876543        4899


Q ss_pred             EEccCCeeEEEEeeecCccccCCCcceEEee-ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe----eCC
Q 014154          128 TCTTKGKASMRSIEVTKVSAESSCSTVKSWN-VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT----AKP  202 (430)
Q Consensus       128 ~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~  202 (430)
                      +++.|+.++||++....        ...... ..+...|.+++|+|++++|++++.|++|++|+++.......    ...
T Consensus        68 s~s~D~~i~vWd~~~~~--------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~  139 (371)
T d1k8kc_          68 TCGTDRNAYVWTLKGRT--------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP  139 (371)
T ss_dssp             EEETTSCEEEEEEETTE--------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred             EEECCCeEEEEeecccc--------cccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccc
Confidence            99999999999986332        122222 24678899999999999999999999999999876543222    222


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC-----------------cceEEEeecCCCeEEEE
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR-----------------RPVMSFDFRETPIKAVA  265 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~~~i~~~~  265 (430)
                      +         ...|.+++|  +|++.+|++|+.|+.|++||+....                 ..+.....|...|.+++
T Consensus       140 ~---------~~~v~~v~~--~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  208 (371)
T d1k8kc_         140 I---------RSTVLSLDW--HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC  208 (371)
T ss_dssp             C---------CSCEEEEEE--CTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE
T ss_pred             c---------ccccccccc--cccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEE
Confidence            2         267999999  8999999999999999999986422                 13455567888999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC--ceeeEEE---
Q 014154          266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR--QLLSAVF---  340 (430)
Q Consensus       266 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~---  340 (430)
                      |+|++++|++++.|+.|++||+.+++.+..+..| ..+|.+++|+|++.+|++| .|+.+++|.....  .......   
T Consensus       209 ~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~  286 (371)
T d1k8kc_         209 FSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDV  286 (371)
T ss_dssp             ECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS-SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCC
T ss_pred             eecccccccccccCCcceEEeeecccceeeeecc-cccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecC
Confidence            9999999999999999999999999999999998 8899999999999877765 5777777654322  1110000   


Q ss_pred             ----------------------------------eeccccceEEeeecccccc-----ccccCCCCceEecCCCC
Q 014154          341 ----------------------------------LKQHLNEVVFDSAFADKEV-----ANAAADAPMLEIQNGND  376 (430)
Q Consensus       341 ----------------------------------~~~~~~~~v~~~~~s~~g~-----~~~~~~d~~i~~~~~~~  376 (430)
                                                        ...| ...|.++++.+.+.     +++++.||.|++|+...
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H-~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         287 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             C--------CHHHHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccccccccceeeEecccceeEEeccccccceecccc-cCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                              0013 33468888877543     36899999999998754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-32  Score=243.72  Aligned_cols=282  Identities=11%  Similarity=0.066  Sum_probs=209.7

Q ss_pred             ceeeecC-CCceEEEEccCCCCCcceeeeecCCCC-CCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeec
Q 014154           16 RALTFDS-LGLIKVIEARGEHGGVPKVVERWGDPH-SSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        16 ~l~t~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      +++.++. ...|+.|+....  .. ..+..+.+|. ..+.+++|++  ..+|.+||+|+.||+|+|||+..++....+..
T Consensus        31 ~la~~~~~~~~i~~~~~~~~--~~-~~~~~~~gh~~~~v~~v~fsP--~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~  105 (325)
T d1pgua1          31 AIAYPCGKSAFVRCLDDGDS--KV-PPVVQFTGHGSSVVTTVKFSP--IKGSQYLCSGDESGKVIVWGWTFDKESNSVEV  105 (325)
T ss_dssp             EEEEEETTEEEEEECCSSCC--SS-CSEEEECTTTTSCEEEEEECS--STTCCEEEEEETTSEEEEEEEEEEGGGTEEEE
T ss_pred             EEEEEeCCCEEEEEEeCCCC--Cc-cceEEEeCCCCCCEEEEEEee--CCCCCEEEEEeCCCCEEEeeecCCcceeeeec
Confidence            4444433 334566665442  12 2345566664 5666666654  44678999999999999999876664443321


Q ss_pred             cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCC
Q 014154           94 AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDIS  173 (430)
Q Consensus        94 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~  173 (430)
                      .           .                                               -..+. .+.+.|.+++|+++
T Consensus       106 ~-----------~-----------------------------------------------~~~~~-~~~~~v~~v~~s~~  126 (325)
T d1pgua1         106 N-----------V-----------------------------------------------KSEFQ-VLAGPISDISWDFE  126 (325)
T ss_dssp             E-----------E-----------------------------------------------EEEEE-CCSSCEEEEEECTT
T ss_pred             c-----------c-----------------------------------------------ccccc-cccCcEEEEEECCC
Confidence            0           0                                               00111 34678999999999


Q ss_pred             CCEEEEEeC--CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcc
Q 014154          174 EKFSLFGGK--GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       174 ~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~  250 (430)
                      +++|++++.  ++.+.+|++++++.+..+..|.         ..|.+++|  +|++. ++++++.|+.|++||+...+. 
T Consensus       127 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~--~~~~~~~~~~~~~d~~v~~~d~~~~~~-  194 (325)
T d1pgua1         127 GRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS---------QRINACHL--KQSRPMRSMTVGDDGSVVFYQGPPFKF-  194 (325)
T ss_dssp             SSEEEEEECCSSCSEEEEETTTCCEEEECCSCS---------SCEEEEEE--CSSSSCEEEEEETTTEEEEEETTTBEE-
T ss_pred             CCccceeeccccceEEEEeecccccceeeeecc---------cccccccc--cccccceEEEeeccccccccccccccc-
Confidence            999987764  6789999999999988887765         77999999  67665 578899999999999987543 


Q ss_pred             eEEE---eecCCCeEEEEecCC-CCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEec---CCCCeEEEEeCCC
Q 014154          251 VMSF---DFRETPIKAVAEEPD-SFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARH---PTLPIIASCGLDS  323 (430)
Q Consensus       251 ~~~~---~~~~~~i~~~~~sp~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~---~~~~~l~s~~~dg  323 (430)
                      ...+   ..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.+| ...+..+.|+   |++.+|++++.|+
T Consensus       195 ~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~-~~~v~~~~~s~~~~dg~~l~s~s~D~  273 (325)
T d1pgua1         195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD-QEPVQGGIFALSWLDSQKFATVGADA  273 (325)
T ss_dssp             EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBT-TBCCCSCEEEEEESSSSEEEEEETTS
T ss_pred             ceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccccc-ccccccceeeeeccCCCEEEEEeCCC
Confidence            3333   346678999999997 588999999999999999999999999987 6666555555   7889999999999


Q ss_pred             cEEEEECCCCceeeEEEeecccc-ceEEeeeccccccccccCCCCceEecCC
Q 014154          324 YLRFWDIKTRQLLSAVFLKQHLN-EVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       324 ~i~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      .|+|||+++++++..+...++.. ....++.+.+++.+++++.||.|++|+.
T Consensus       274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         274 TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            99999999999998865554422 2234555666666699999999999984

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.9e-32  Score=241.22  Aligned_cols=229  Identities=13%  Similarity=0.097  Sum_probs=192.9

Q ss_pred             eEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EeeCC
Q 014154          125 TLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--WTAKP  202 (430)
Q Consensus       125 ~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--~~~~~  202 (430)
                      .++. ..++.+.+|++....        ..+++. .|...|.+++|+|++++|++|+.||+|++||+.++...  ..+..
T Consensus        31 ~l~~-~~~~~v~i~~~~~~~--------~~~~~~-~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~  100 (311)
T d1nr0a1          31 KIQY-CNGTSVYTVPVGSLT--------DTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV  100 (311)
T ss_dssp             EEEE-EETTEEEEEETTCSS--------CCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred             EEEE-EeCCEEEEEECCCCc--------eeEEEc-CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccc
Confidence            4444 457778899875332        455664 68899999999999999999999999999999886543  33444


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC--CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCE-EEEEeCC
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND--HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN-IYIGNGS  279 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~-l~~~~~d  279 (430)
                      +.         ..|.+++|  +|++.+|++++.+  ..+++|++.+++ +...+.+|...|++++|+|++++ |++|+.|
T Consensus       101 ~~---------~~v~~v~~--s~d~~~l~~~~~~~~~~~~v~~~~~~~-~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d  168 (311)
T d1nr0a1         101 FS---------GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDD  168 (311)
T ss_dssp             SS---------SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             cc---------Cccccccc--ccccccccccccccccccccccccccc-ccccccccccccccccccccceeeecccccc
Confidence            43         67999999  8999999998864  569999999865 47788899999999999999985 7889999


Q ss_pred             CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEe-----eccccceEEeeec
Q 014154          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFL-----KQHLNEVVFDSAF  354 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~v~~~~~  354 (430)
                      +.|++||+++++....+..| ...|+++.|+|++++|++++.|+.|++||+.++..+..+..     .+| ...|++++|
T Consensus       169 ~~i~i~d~~~~~~~~~~~~~-~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~  246 (311)
T d1nr0a1         169 NTVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH-SGSVFGLTW  246 (311)
T ss_dssp             SCEEEEETTTBEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS-SSCEEEEEE
T ss_pred             cccccccccccccccccccc-cccccccccCccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            99999999999999999998 89999999999999999999999999999999888776432     234 455799999


Q ss_pred             cccccc-cccCCCCceEecCCCCC
Q 014154          355 ADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       355 s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      +|++++ ++++.|+.|++|+....
T Consensus       247 s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         247 SPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCC
Confidence            999998 88999999999998654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7e-32  Score=238.33  Aligned_cols=277  Identities=15%  Similarity=0.144  Sum_probs=199.0

Q ss_pred             ccCCCCCCC--cceeeecCCCceEEEEccCCCCCcceeeeecC-CCCCCcceeeeeecCCCCCceeEEeecCCeEEEecC
Q 014154            6 TLECPGCPP--LRALTFDSLGLIKVIEARGEHGGVPKVVERWG-DPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNP   82 (430)
Q Consensus         6 ~~~~~~~~~--~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~   82 (430)
                      .++|..+.|  ..|+||+.||+|++||+.++     +....+. .|...+..++  +  +|+|+ +++++.|+.+++|+.
T Consensus        14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~~~h~~~v~~v~--~--~~~g~-~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2          14 AITALSSSADGKTLFSADAEGHINSWDISTG-----ISNRVFPDVHATMITGIK--T--TSKGD-LFTVSWDDHLKVVPA   83 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC-----CEEECSSCSCSSCEEEEE--E--CTTSC-EEEEETTTEEEEECS
T ss_pred             CcEEEEECCCCCEEEEEcCCCeEEEEECCCC-----cEEEEEcCCCCCcEEEEE--e--eccce-eecccceeeEEEecc
Confidence            344444333  46889999999999999987     5666664 5777755444  4  56676 556678999999998


Q ss_pred             CCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC
Q 014154           83 LNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS  162 (430)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~  162 (430)
                      ....... ...+    .......+..+.+.+.         +.++++..++.+.+|+..             +.......
T Consensus        84 ~~~~~~~-~~~~----~~~~~~~~~~~~~s~~---------g~~~~~~~~~~i~~~~~~-------------~~~~~~~~  136 (299)
T d1nr0a2          84 GGSGVDS-SKAV----ANKLSSQPLGLAVSAD---------GDIAVAACYKHIAIYSHG-------------KLTEVPIS  136 (299)
T ss_dssp             SSSSSCT-TSCC----EEECSSCEEEEEECTT---------SSCEEEEESSEEEEEETT-------------EEEEEECS
T ss_pred             CCccccc-cccc----cccccccccccccccc---------cccccccccccccccccc-------------cccccccc
Confidence            6443211 1110    0012234444554332         355556666778888632             12223345


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe-eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT-AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      ..+.+++|+|++++|++|+.|+.|++||+++++.... ...+         ...|++++|  +|++.+|++++.|+.|++
T Consensus       137 ~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~---------~~~i~~~~~--~~~~~~l~~~~~d~~i~~  205 (299)
T d1nr0a2         137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH---------PAEITSVAF--SNNGAFLVATDQSRKVIP  205 (299)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC---------SSCEEEEEE--CTTSSEEEEEETTSCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc---------ccccccccc--cccccccccccccccccc
Confidence            6788999999999999999999999999987665332 1222         367999999  899999999999999999


Q ss_pred             EECCCCCcc--eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEE--eeeeCCCCCCeEEEEecCCCCeEE
Q 014154          242 YDTSAQRRP--VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLL--GCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       242 wd~~~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      ||+.++...  ...+.+|...|++++|+|++++|++|+.|+.|++||++++...  .....|+...+.++.| +++.+|+
T Consensus       206 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~  284 (299)
T d1nr0a2         206 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIV  284 (299)
T ss_dssp             EEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEE
T ss_pred             ccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEE
Confidence            999875432  3456678899999999999999999999999999999876543  3333443566777765 5677999


Q ss_pred             EEeCCCcEEEEECC
Q 014154          318 SCGLDSYLRFWDIK  331 (430)
Q Consensus       318 s~~~dg~i~iwd~~  331 (430)
                      +++.|+.|++||+.
T Consensus       285 s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         285 SAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEETTSCEEEEECC
T ss_pred             EEeCCCEEEEEecc
Confidence            99999999999984

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-31  Score=240.29  Aligned_cols=295  Identities=12%  Similarity=0.121  Sum_probs=219.9

Q ss_pred             eeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCccccc
Q 014154           41 VVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESS  120 (430)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  120 (430)
                      ...++.+|...| +.++++    +|++||+|+.||+|+|||+.+++++..+.+|        .+.|.++.+.+ .     
T Consensus         4 ~~~tL~GH~~~v-itc~~~----~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H--------~~~V~~l~~s~-~-----   64 (355)
T d1nexb2           4 QRTTLRGHMTSV-ITCLQF----EDNYVITGADDKMIRVYDSINKKFLLQLSGH--------DGGVWALKYAH-G-----   64 (355)
T ss_dssp             EEEEEECCSSSC-EEEEEE----ETTEEEEEETTTEEEEEETTTTEEEEEEECC--------SSCEEEEEEET-T-----
T ss_pred             CcEEECCcCCCc-EEEEEE----CCCEEEEEeCCCeEEEEECCCCcEEEEEECC--------CCCEEEEEEcC-C-----
Confidence            355788998886 234555    4579999999999999999999999888764        45888888753 2     


Q ss_pred             ccCceEEEEccCCeeEEEEeeecCccccCCCcceEEe-eecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          121 SRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSW-NVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       121 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                         +.+++++.|+.+.+|++....        .+... ............+.+++.++++++.|+.|++||+.+......
T Consensus        65 ---~~l~s~s~D~~i~iw~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~  133 (355)
T d1nexb2          65 ---GILVSGSTDRTVRVWDIKKGC--------CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD  133 (355)
T ss_dssp             ---TEEEEEETTCCEEEEETTTTE--------EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------
T ss_pred             ---CEEEEEecccccccccccccc--------cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc
Confidence               589999999999999975432        22222 112223445667788999999999999999999987654432


Q ss_pred             eCCCCCCCC--------------CCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEE
Q 014154          200 AKPPPKNSL--------------GIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVA  265 (430)
Q Consensus       200 ~~~~~~~~~--------------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~  265 (430)
                      .........              ...+...+.  .+  .+++++++++..|+.|++||+.+++ .+....++...+.++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~--~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~  208 (355)
T d1nexb2         134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TV--SGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTI  208 (355)
T ss_dssp             -----CCCEEESCTTTCTTEEEEEECCSSCEE--EE--EEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEE
T ss_pred             ccccceeccceeccccccceeeeeeecccccc--cc--ccccceeeeecccceeeeeeccccc-ceeeeecccccccccc
Confidence            221110000              000011122  22  4578899999999999999999865 4777888888999999


Q ss_pred             ecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc
Q 014154          266 EEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL  345 (430)
Q Consensus       266 ~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  345 (430)
                      |+|++.++++++.|+.|++||++++.++..+.+| ...|.++.|++  ++|++++.||.|++||++++.....    .|.
T Consensus       209 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~----~~~  281 (355)
T d1nexb2         209 YDHERKRCISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS----YHH  281 (355)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTCCEEEEECCC-SSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEE----EEC
T ss_pred             ccccceeeecccccceEEeeeccccccccccccc-ccccccccccc--ceeeeeecccccccccccccceecc----ccc
Confidence            9999999999999999999999999999999998 89999999964  6899999999999999998776543    343


Q ss_pred             cceEEeeeccccccccccCCCCceEecCCCCC
Q 014154          346 NEVVFDSAFADKEVANAAADAPMLEIQNGNDT  377 (430)
Q Consensus       346 ~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~~  377 (430)
                      ........|++++.+++++.|+.|++|+....
T Consensus       282 ~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg  313 (355)
T d1nexb2         282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSG  313 (355)
T ss_dssp             TTCCCCCEEEECSSEEEEEETTEEEEEETTTC
T ss_pred             CCceEEEEEcCCCCEEEEEeCCEEEEEECCCC
Confidence            44434456778888877778999999998653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-31  Score=235.26  Aligned_cols=270  Identities=11%  Similarity=0.097  Sum_probs=206.3

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      ++++++.+|..+|.++++    +|    |++|+.||+|++||+.++..             .|...+.++.+.+  .   
T Consensus         4 ~~i~~l~gH~~~I~~l~~----s~----l~sgs~Dg~v~~Wd~~~~~~-------------~h~~~V~~~~~~~--~---   57 (287)
T d1pgua2           4 EVLKTISGHNKGITALTV----NP----LISGSYDGRIMEWSSSSMHQ-------------DHSNLIVSLDNSK--A---   57 (287)
T ss_dssp             EEEEEECCCSSCEEEEET----TT----TEEEETTSCEEETTTTEEEC-------------CCCSCEEEEECCS--T---
T ss_pred             ceeEEECCCCCceEEEEE----Cc----EEEEeCCCeEEEEECCCCCC-------------CCCCCEEEEEecC--C---
Confidence            678899999999776655    33    99999999999999865431             2345676666432  1   


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                          ..+++++.|+++++|++...                .....+.++++++++..++++ .++.+.+|+..+++.+..
T Consensus        58 ----~~~~s~s~D~~v~~w~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  116 (287)
T d1pgua2          58 ----QEYSSISWDDTLKVNGITKH----------------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKS  116 (287)
T ss_dssp             ----TCCEEEETTTEEEETTEEEE----------------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEE
T ss_pred             ----CeEEEEeecccccccccccc----------------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeee
Confidence                47888999999988876432                123457778888887776655 455789999998888777


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG  278 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~  278 (430)
                      +...          ..+  .++  ++++..+++++.++ .|++|++............|...+++++|+|++.+|++|+.
T Consensus       117 ~~~~----------~~~--~~~--~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~  182 (287)
T d1pgua2         117 VRLN----------SPG--SAV--SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV  182 (287)
T ss_dssp             EECS----------SCE--EEE--EECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccc----------cee--eee--eccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc
Confidence            6543          223  344  45677788777765 79999998644322223346788999999999999999999


Q ss_pred             CCcEEEEEccCCeEEee-eeCCCCCCeEEEEecCC----------CCeEEEEeCCCcEEEEECCCCc-eeeEEEeecccc
Q 014154          279 SGDLASVDIRTGKLLGC-FIGKCSGSIRSIARHPT----------LPIIASCGLDSYLRFWDIKTRQ-LLSAVFLKQHLN  346 (430)
Q Consensus       279 d~~i~iwd~~~~~~~~~-~~~~~~~~v~~i~~~~~----------~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~  346 (430)
                      ||.|++||+.+++.... +.+| ..+|.+++|+|.          +.+|++|+.|+.|+|||++++. .+..  +.+| .
T Consensus       183 dg~i~i~d~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~--~~~h-~  258 (287)
T d1pgua2         183 MGKILLYDLQSREVKTSRWAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA--LNAH-K  258 (287)
T ss_dssp             TSCEEEEETTTTEEEECCSCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE--TTSS-T
T ss_pred             cccccceeeccccccccccccc-ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE--eCCC-C
Confidence            99999999999987654 5566 899999999875          4689999999999999997744 4443  6678 4


Q ss_pred             ceEEeeeccccccccccCCCCceEecCC
Q 014154          347 EVVFDSAFADKEVANAAADAPMLEIQNG  374 (430)
Q Consensus       347 ~~v~~~~~s~~g~~~~~~~d~~i~~~~~  374 (430)
                      ..|++++|+|++.+++++.|+.|++|+.
T Consensus       259 ~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         259 DGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             TCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            5579999999998899999999999974

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-31  Score=243.07  Aligned_cols=295  Identities=15%  Similarity=0.148  Sum_probs=200.0

Q ss_pred             eeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEE---eecCccc
Q 014154           42 VERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHL---FKRQREE  118 (430)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~  118 (430)
                      .....+|...|..++++      +++|++++.|++|+|||..+.+..........  ...+...+..+..   .....  
T Consensus         7 ~~~~~~H~~~I~~v~~~------~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--   76 (393)
T d1sq9a_           7 ANAGKAHDADIFSVSAC------NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYS--HFVHKSGLHHVDVLQAIERDA--   76 (393)
T ss_dssp             EEESSCSSSCEEEEEEC------SSEEEEEETTSEEEEEESBCCTTCCGGGGEEE--EECCTTCEEEEEEEEEEETTT--
T ss_pred             eecCCcccCccEEEEEe------CCEEEEEECCCeEEEEECCCCCCCcccceeEe--eeeccCCceEeeeEeeeccCC--
Confidence            34567899986665542      25899999999999999765543221111000  0001112211111   11111  


Q ss_pred             ccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee------ecCCCceEEEEEcCC-----CCEEEEEeCCCeEE
Q 014154          119 SSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN------VCASGTIAFSKVDIS-----EKFSLFGGKGVEVN  187 (430)
Q Consensus       119 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~------~~~~~~i~~~~~~~~-----~~~l~~~~~d~~i~  187 (430)
                        .....+++++.+|.+.+|++.......     .+....      ..+...+..+++.++     +.++++++.||.++
T Consensus        77 --~~~~~~~s~~~dg~v~~w~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~  149 (393)
T d1sq9a_          77 --FELCLVATTSFSGDLLFYRITREDETK-----KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY  149 (393)
T ss_dssp             --EEEEEEEEEETTSCEEEEEEEECTTTC-----CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred             --CCCcEEEEEeCCCcEEEEEccCCCcee-----eeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEE
Confidence              011356688889999999987654311     111111      012345667777664     46889999999999


Q ss_pred             EEECCCCee-----------eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceE----
Q 014154          188 VWDLDKCEK-----------IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVM----  252 (430)
Q Consensus       188 ~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----  252 (430)
                      +|++.....           ...+..  .......+...+.+++|  +|++ +|++|+.|++|++||+.+++. +.    
T Consensus       150 vw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~--s~dg-~lasgs~Dg~i~iwd~~~~~~-~~~~~~  223 (393)
T d1sq9a_         150 IWKFHPFADESNSLTLNWSPTLELQG--TVESPMTPSQFATSVDI--SERG-LIATGFNNGTVQISELSTLRP-LYNFES  223 (393)
T ss_dssp             EEEEESSSSHHHHTTTCCCCEEEEEE--EECCSSSSCCCCCEEEE--CTTS-EEEEECTTSEEEEEETTTTEE-EEEEEC
T ss_pred             EEEeecCCcccceeeeeeccceeccc--ceecccCCCCcEEEEEE--CCCC-EEEEEeCCCcEEEEeeccccc-cccccc
Confidence            999853211           000000  00001122356889999  7876 899999999999999998653 33    


Q ss_pred             --EEeecCCCeEEEEecCCCCEEEEEeCCCc---EEEEEccCCeEEeeee-------------CCCCCCeEEEEecCCCC
Q 014154          253 --SFDFRETPIKAVAEEPDSFNIYIGNGSGD---LASVDIRTGKLLGCFI-------------GKCSGSIRSIARHPTLP  314 (430)
Q Consensus       253 --~~~~~~~~i~~~~~sp~~~~l~~~~~d~~---i~iwd~~~~~~~~~~~-------------~~~~~~v~~i~~~~~~~  314 (430)
                        .+.+|..+|.+++|+|++++|++|+.|++   |++||+++++++..+.             +| ...|++++|+|+++
T Consensus       224 ~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH-~~~V~~l~fspd~~  302 (393)
T d1sq9a_         224 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGE  302 (393)
T ss_dssp             CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSS
T ss_pred             ccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecc-cCceeeeccCCCCC
Confidence              34568899999999999999999998874   8999999998887764             56 88999999999999


Q ss_pred             eEEEEeCCCcEEEEECCCCceeeEEEeeccccce---EEeeeccccccccc
Q 014154          315 IIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEV---VFDSAFADKEVANA  362 (430)
Q Consensus       315 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---v~~~~~s~~g~~~~  362 (430)
                      +|++++.|++|+|||+++++++.+  +.+|...+   ...++|+|++..++
T Consensus       303 ~l~S~s~D~~v~vWd~~~g~~~~~--l~gH~~~v~~~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         303 TLCSAGWDGKLRFWDVKTKERITT--LNMHCDDIEIEEDILAVDEHGDSLA  351 (393)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEE--EECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred             eeEEECCCCEEEEEECCCCCEEEE--ECCcCCcccCCccEEEECCCCCEEE
Confidence            999999999999999999999998  67884432   23688999998843

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.9e-30  Score=226.11  Aligned_cols=267  Identities=15%  Similarity=0.228  Sum_probs=204.3

Q ss_pred             cCCCCCCCcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCc
Q 014154            7 LECPGCPPLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGD   86 (430)
Q Consensus         7 ~~~~~~~~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~   86 (430)
                      +.|......+|+||+.||+|+|||+.++     +++..+.+|...|.  ++++    ++++|++|+.||.|++|++..+.
T Consensus        18 V~c~~~d~~~l~sgs~Dg~i~vWd~~~~-----~~~~~l~~H~~~V~--~v~~----~~~~l~s~s~D~~i~~~~~~~~~   86 (293)
T d1p22a2          18 VYCLQYDDQKIVSGLRDNTIKIWDKNTL-----ECKRILTGHTGSVL--CLQY----DERVIITGSSDSTVRVWDVNTGE   86 (293)
T ss_dssp             EEEEECCSSEEEEEESSSCEEEEESSSC-----CEEEEECCCSSCEE--EEEC----CSSEEEEEETTSCEEEEESSSCC
T ss_pred             EEEEEEcCCEEEEEeCCCeEEEEECCCC-----cEEEEEecCCCCEe--eeec----ccceeeccccccccccccccccc
Confidence            4455555678999999999999999987     78889999999854  4445    45699999999999999998887


Q ss_pred             ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceE
Q 014154           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIA  166 (430)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~  166 (430)
                      ........        ....  .......        ..++++..++.+.+|++.....      .....-...+...+.
T Consensus        87 ~~~~~~~~--------~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~  142 (293)
T d1p22a2          87 MLNTLIHH--------CEAV--LHLRFNN--------GMMVTCSKDRSIAVWDMASPTD------ITLRRVLVGHRAAVN  142 (293)
T ss_dssp             EEEEECCC--------CSCE--EEEECCT--------TEEEEEETTSCEEEEECSSSSC------CEEEEEECCCSSCEE
T ss_pred             cccccccc--------cccc--ccccccc--------cceeecccccceeEeecccccc------ccccccccccccccc
Confidence            65554431        0111  1222222        4788899999999998754331      111111224556676


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  246 (430)
                      .+.+.  ...+++++.|+.|++||+.+++.+..+..+.         ..+..+.+    ++..+++++.|+.|++||+++
T Consensus       143 ~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~---------~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~  207 (293)
T d1p22a2         143 VVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---------RGIACLQY----RDRLVVSGSSDNTIRLWDIEC  207 (293)
T ss_dssp             EEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCS---------SCEEEEEE----ETTEEEEEETTSCEEEEETTT
T ss_pred             cceec--ccccccccCCCceeeecCCCCcEEEEEcccc---------cccccccC----CCCeEEEecCCCEEEEEeccc
Confidence            66664  5678899999999999999999888877654         45666666    467899999999999999998


Q ss_pred             CCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC---------CeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          247 QRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT---------GKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       247 ~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      .. .+..+.+|...+..  +++++.+|++|+.||.|++||+..         ..++..+.+| ...|++++|+  +.+|+
T Consensus       208 ~~-~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H-~~~V~~v~~d--~~~l~  281 (293)
T d1p22a2         208 GA-CLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH-SGRVFRLQFD--EFQIV  281 (293)
T ss_dssp             CC-EEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC-SSCCCCEEEC--SSCEE
T ss_pred             ce-eeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC-CCCEEEEEEc--CCEEE
Confidence            65 47788888777776  456788999999999999999753         3467788888 8999999994  56899


Q ss_pred             EEeCCCcEEEEE
Q 014154          318 SCGLDSYLRFWD  329 (430)
Q Consensus       318 s~~~dg~i~iwd  329 (430)
                      +|+.||+|+|||
T Consensus       282 s~s~Dg~i~iWD  293 (293)
T d1p22a2         282 SSSHDDTILIWD  293 (293)
T ss_dssp             ECCSSSEEEEEC
T ss_pred             EEecCCEEEEeC
Confidence            999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.5e-29  Score=229.86  Aligned_cols=297  Identities=13%  Similarity=0.044  Sum_probs=199.3

Q ss_pred             CCcceeeecCCCceEEEEccCCCCCcc-eeeeecCCCCCCcc---eeeeeecCCCCCceeEEeecCCeEEEecCCCCccc
Q 014154           13 PPLRALTFDSLGLIKVIEARGEHGGVP-KVVERWGDPHSSNC---VLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLR   88 (430)
Q Consensus        13 ~~~~l~t~~~dg~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~   88 (430)
                      .+..++|++.|++|+|||........+ ........|...+.   ..........++.++++++.||.|++|++......
T Consensus        23 ~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~  102 (393)
T d1sq9a_          23 CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET  102 (393)
T ss_dssp             CSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT
T ss_pred             eCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCce
Confidence            346799999999999999876422111 11111222332211   11222222334567889999999999998765544


Q ss_pred             ceeecc--CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc----cccCCCcceEEee----
Q 014154           89 VAISNA--GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV----SAESSCSTVKSWN----  158 (430)
Q Consensus        89 ~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~----~~~~~~~~i~~~~----  158 (430)
                      ..+...  .......+...+..+.+......   .....+++++.+|.+.+|++.....    ..........+..    
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (393)
T d1sq9a_         103 KKVIFEKLDLLDSDMKKHSFWALKWGASNDR---LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES  179 (393)
T ss_dssp             CCEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECC
T ss_pred             eeeeccccceeeeccCCCceEEEEEecCCCc---ccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceec
Confidence            433321  11111122233444444332210   1124788899999999999875433    1111111121111    


Q ss_pred             -ecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC
Q 014154          159 -VCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH  237 (430)
Q Consensus       159 -~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg  237 (430)
                       ..+...+.+++|+|++ +|++|+.|++|++||+.+++.+..+.....   ...|...|.+++|  +|++++|++|+.|+
T Consensus       180 ~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~---l~~h~~~V~~l~~--spdg~~l~sgs~D~  253 (393)
T d1sq9a_         180 PMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHS---MINNSNSIRSVKF--SPQGSLLAIAHDSN  253 (393)
T ss_dssp             SSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC------CCCCCEEEEEE--CSSTTEEEEEEEET
T ss_pred             ccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccc---cccccceEEEccc--ccccceeeeecCCC
Confidence             1234568899999987 899999999999999999988776654321   1224588999999  89999999999987


Q ss_pred             c---EEEEECCCCCcceEEE-------------eecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCC
Q 014154          238 Q---VRLYDTSAQRRPVMSF-------------DFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCS  301 (430)
Q Consensus       238 ~---i~iwd~~~~~~~~~~~-------------~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  301 (430)
                      +   |++||+.++.. +..+             .+|...|++++|+|++++|++|+.|++|++||+++++++.++.+| .
T Consensus       254 t~~~i~lwd~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH-~  331 (393)
T d1sq9a_         254 SFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH-C  331 (393)
T ss_dssp             TEEEEEEEETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC-G
T ss_pred             Ccceeeeccccccee-eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCc-C
Confidence            4   89999998653 4444             379999999999999999999999999999999999999999998 6


Q ss_pred             CCeE----EEEecCCCCeEEEEe
Q 014154          302 GSIR----SIARHPTLPIIASCG  320 (430)
Q Consensus       302 ~~v~----~i~~~~~~~~l~s~~  320 (430)
                      ..|.    .++|+|++..+++++
T Consensus       332 ~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         332 DDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             GGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CcccCCccEEEECCCCCEEEEcc
Confidence            6664    477888887776554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.9e-29  Score=222.25  Aligned_cols=281  Identities=14%  Similarity=0.201  Sum_probs=212.1

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      +....+.+|.+.|.. ++++    +|++||+|+.||+|+|||+.+++++..+.+|        ...+.++.+.+      
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~----~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h--------~~~V~~v~~~~------   67 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQF----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH--------TGGVWSSQMRD------   67 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEE----ETTEEEEEETTSCEEEEETTTCCEEEECCCC--------SSCEEEEEEET------
T ss_pred             CcCEEECCcCCceEE-EEEE----CCCEEEEEeCCCeEEEEECCCCCEEEEEeCC--------CCCEEEEEeCC------
Confidence            455678899998732 4554    5679999999999999999999988887653        45787777642      


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEe
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWT  199 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~  199 (430)
                          ..+++++.|+.+.+|......         ...........+.....  ....++.+..|+.+.+|+..+++....
T Consensus        68 ----~~l~s~s~D~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~  132 (342)
T d2ovrb2          68 ----NIIISGSTDRTLKVWNAETGE---------CIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHV  132 (342)
T ss_dssp             ----TEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEE
T ss_pred             ----Cccccceeccccccccccccc---------ceecccccceeEeeeec--ccccccccccceeEEEeecccccceee
Confidence                489999999999999865322         22222222333444333  456788899999999999998887766


Q ss_pred             eCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC
Q 014154          200 AKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS  279 (430)
Q Consensus       200 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d  279 (430)
                      +....         .  ....+  .+....+++++.|+.|++||+.... .+..+.+|...+..+.  +++.+|++++.|
T Consensus       133 ~~~~~---------~--~~~~~--~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~--~~~~~l~s~~~d  196 (342)
T d2ovrb2         133 LMGHV---------A--AVRCV--QYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQ--FDGIHVVSGSLD  196 (342)
T ss_dssp             EECCS---------S--CEEEE--EECSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEE--ECSSEEEEEETT
T ss_pred             eeccc---------c--cceee--ccccceeeeecCCCeEEEeecccce-eeEEEcCccccccccc--CCCCEEEEEeCC
Confidence            55432         1  11222  3456788999999999999998754 5778888876666554  567899999999


Q ss_pred             CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc--cceEEeeecccc
Q 014154          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL--NEVVFDSAFADK  357 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~v~~~~~s~~  357 (430)
                      |.|++||++.++++..+.+| ...+.++.+++  ++|++++.|+.|++||+...+....+  .++.  ...+.+++++  
T Consensus       197 g~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~--  269 (342)
T d2ovrb2         197 TSIRVWDVETGNCIHTLTGH-QSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTL--QGPNKHQSAVTCLQFN--  269 (342)
T ss_dssp             SCEEEEETTTCCEEEEECCC-CSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEE--CSTTSCSSCEEEEEEC--
T ss_pred             CeEEEeecccceeeeEeccc-ccceeEEecCC--CEEEEEcCCCEEEEEecccccccccc--cccceeeeceeecccC--
Confidence            99999999999999999998 88898888754  69999999999999999998887764  3332  3334555555  


Q ss_pred             ccc-cccCCCCceEecCCCCC
Q 014154          358 EVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       358 g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      +.+ ++++.||.|++|+....
T Consensus       270 ~~~~~s~s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         270 KNFVITSSDDGTVKLWDLKTG  290 (342)
T ss_dssp             SSEEEEEETTSEEEEEETTTC
T ss_pred             CCeeEEEcCCCEEEEEECCCC
Confidence            456 89999999999998754

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.2e-28  Score=210.64  Aligned_cols=275  Identities=14%  Similarity=0.215  Sum_probs=208.1

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      +.+..+.+|...|.+  +++    +|++||+|+.||+|+|||+.+++++..+.+|        .+.+.++.+   ..   
T Consensus         6 ~~i~~~~~~~~~V~c--~~~----d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H--------~~~V~~v~~---~~---   65 (293)
T d1p22a2           6 QRIHCRSETSKGVYC--LQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGH--------TGSVLCLQY---DE---   65 (293)
T ss_dssp             CCEECCCSSCCCEEE--EEC----CSSEEEEEESSSCEEEEESSSCCEEEEECCC--------SSCEEEEEC---CS---
T ss_pred             EEEeccCCCCCCEEE--EEE----cCCEEEEEeCCCeEEEEECCCCcEEEEEecC--------CCCEeeeec---cc---
Confidence            344556667777544  444    5779999999999999999999998888764        457777664   22   


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEK---  196 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---  196 (430)
                          ..+++++.|+.+.+|++....        ......   ........+.+....++++..++.+.+|+......   
T Consensus        66 ----~~l~s~s~D~~i~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (293)
T d1p22a2          66 ----RVIITGSSDSTVRVWDVNTGE--------MLNTLI---HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL  130 (293)
T ss_dssp             ----SEEEEEETTSCEEEEESSSCC--------EEEEEC---CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEE
T ss_pred             ----ceeeccccccccccccccccc--------cccccc---ccccccccccccccceeecccccceeEeeccccccccc
Confidence                589999999999999976443        111111   12223344556777899999999999999976543   


Q ss_pred             eEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE
Q 014154          197 IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG  276 (430)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~  276 (430)
                      ...+..+.         ..+..+.+    ....+++++.|+.|++||+++++ ++..+.++...+..+.++  +.+++++
T Consensus       131 ~~~~~~~~---------~~v~~~~~----~~~~~~~~s~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~~  194 (293)
T d1p22a2         131 RRVLVGHR---------AAVNVVDF----DDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR--DRLVVSG  194 (293)
T ss_dssp             EEEECCCS---------SCEEEEEE----ETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE--TTEEEEE
T ss_pred             cccccccc---------ccccccee----cccccccccCCCceeeecCCCCc-EEEEEcccccccccccCC--CCeEEEe
Confidence            22333332         55666666    45678899999999999999865 578888888888888776  5589999


Q ss_pred             eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCC---------ceeeEEEeeccccc
Q 014154          277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTR---------QLLSAVFLKQHLNE  347 (430)
Q Consensus       277 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~~~  347 (430)
                      +.|+.|++||+++.+.+..+.++ ...+..  +++++.+|++++.||.|++||+.+.         ..+..  +.+| ..
T Consensus       195 ~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~H-~~  268 (293)
T d1p22a2         195 SSDNTIRLWDIECGACLRVLEGH-EELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT--LVEH-SG  268 (293)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCC-SSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEE--ECCC-SS
T ss_pred             cCCCEEEEEecccceeeeeeccc-ceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEE--ecCC-CC
Confidence            99999999999999999999887 677765  4567889999999999999997542         33444  6677 45


Q ss_pred             eEEeeeccccccc-cccCCCCceEecC
Q 014154          348 VVFDSAFADKEVA-NAAADAPMLEIQN  373 (430)
Q Consensus       348 ~v~~~~~s~~g~~-~~~~~d~~i~~~~  373 (430)
                      .|++++|+  +.+ ++++.|++|++||
T Consensus       269 ~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         269 RVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            56889885  445 9999999999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.5e-29  Score=220.53  Aligned_cols=251  Identities=13%  Similarity=0.136  Sum_probs=184.4

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCC
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGD   96 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~   96 (430)
                      |+||+.||+|++||+.++          ..+|...|..+++    .++ ..+++++.|++|++|++...+..        
T Consensus        24 l~sgs~Dg~v~~Wd~~~~----------~~~h~~~V~~~~~----~~~-~~~~s~s~D~~v~~w~~~~~~~~--------   80 (287)
T d1pgua2          24 LISGSYDGRIMEWSSSSM----------HQDHSNLIVSLDN----SKA-QEYSSISWDDTLKVNGITKHEFG--------   80 (287)
T ss_dssp             TEEEETTSCEEETTTTEE----------ECCCCSCEEEEEC----CST-TCCEEEETTTEEEETTEEEEECS--------
T ss_pred             EEEEeCCCeEEEEECCCC----------CCCCCCCEEEEEe----cCC-CeEEEEeeccccccccccccccc--------
Confidence            899999999999998874          2468777555544    333 45899999999999998643311        


Q ss_pred             CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE
Q 014154           97 SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF  176 (430)
Q Consensus        97 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~  176 (430)
                             ..+..+.+.+ .        +.++....+..+.+|......        .+..+..  ...  ..++++++..
T Consensus        81 -------~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~--~~~~~~~~~~  132 (287)
T d1pgua2          81 -------SQPKVASANN-D--------GFTAVLTNDDDLLILQSFTGD--------IIKSVRL--NSP--GSAVSLSQNY  132 (287)
T ss_dssp             -------SCEEEEEECS-S--------SEEEEEETTSEEEEEETTTCC--------EEEEEEC--SSC--EEEEEECSSE
T ss_pred             -------cceeeeeecc-C--------CceEEEeecccceeeecccee--------eeeeccc--cce--eeeeeccCcc
Confidence                   1222233222 1        345555556666666543221        3333332  233  3456677888


Q ss_pred             EEEEeCCC-eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe
Q 014154          177 SLFGGKGV-EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD  255 (430)
Q Consensus       177 l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  255 (430)
                      +++++.++ .+++|++........+...        +...+++++|  +|++.+|++|+.||.|++||+.++......+.
T Consensus       133 ~~v~~~~~~~v~~~~~~~~~~~~~~~~~--------~~~~v~~~~~--s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  202 (287)
T d1pgua2         133 VAVGLEEGNTIQVFKLSDLEVSFDLKTP--------LRAKPSYISI--SPSETYIAAGDVMGKILLYDLQSREVKTSRWA  202 (287)
T ss_dssp             EEEEETTTSCEEEEETTEEEEEEECSSC--------CSSCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred             eeeeccccceeeeeeccccceeeeeeec--------cCCceeEEEe--ccCccccccccccccccceeeccccccccccc
Confidence            88888765 7999999876665554432        1266999999  89999999999999999999998664444567


Q ss_pred             ecCCCeEEEEecCC----------CCEEEEEeCCCcEEEEEccC-CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCc
Q 014154          256 FRETPIKAVAEEPD----------SFNIYIGNGSGDLASVDIRT-GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSY  324 (430)
Q Consensus       256 ~~~~~i~~~~~sp~----------~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~  324 (430)
                      +|...|.+++|+|.          +.+|++|+.|+.|++||+++ .+.+..+.+| ...|++++|+|++ .|++++.|+.
T Consensus       203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h-~~~V~~v~~~~~~-~l~s~g~D~~  280 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPS-TLVSSGADAC  280 (287)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS-TTCEEEEEEEETT-EEEEEETTSC
T ss_pred             ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC-CCCeEEEEECCCC-EEEEEECCCe
Confidence            89999999999874          46899999999999999977 5566677787 8999999999986 5889999999


Q ss_pred             EEEEEC
Q 014154          325 LRFWDI  330 (430)
Q Consensus       325 i~iwd~  330 (430)
                      |++|++
T Consensus       281 v~iW~i  286 (287)
T d1pgua2         281 IKRWNV  286 (287)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999986

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.4e-29  Score=223.99  Aligned_cols=299  Identities=10%  Similarity=0.035  Sum_probs=210.7

Q ss_pred             eeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc
Q 014154           40 KVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES  119 (430)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  119 (430)
                      ++++...+|.+.|+.++|    +|++++||+|+.||+|+|||+.++.....+..     ...+...+.++.|.+...   
T Consensus         2 ~~v~~~~~h~d~I~~l~f----sp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~-----~~~h~~~V~~v~f~~~~~---   69 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKI----IPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ-----SLRYKHPLLCCNFIDNTD---   69 (342)
T ss_dssp             EEEECSSCCSSCEEEEEE----EGGGTEEEEEETTSEEEEEEEETTTTEEEEEE-----EEECSSCEEEEEEEESSS---
T ss_pred             CeEEcCCCCCCCEEEEEE----eCCCCEEEEEECCCeEEEEEccCCCcceEEEE-----ecCCCCCEEEEEEeCCCC---
Confidence            567778889998655555    56788999999999999999977655444332     112446888888877654   


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKI--  197 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~--  197 (430)
                          ..+++++.++.+.+|++....        ........+........+.++...+++++.++.+++||++.....  
T Consensus        70 ----~~l~sg~~d~~v~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~  137 (342)
T d1yfqa_          70 ----LQIYVGTVQGEILKVDLIGSP--------SFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI  137 (342)
T ss_dssp             ----EEEEEEETTSCEEEECSSSSS--------SEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCE
T ss_pred             ----CEEEEcccccceeeeeccccc--------ccccccccccccccccccccccccccccccccccceeecccccccee
Confidence                578999999999999876443        233333333344455666778899999999999999998643322  


Q ss_pred             --EeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcce--EEEeecCCCeEEEEe-cCCCCE
Q 014154          198 --WTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPV--MSFDFRETPIKAVAE-EPDSFN  272 (430)
Q Consensus       198 --~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~i~~~~~-sp~~~~  272 (430)
                        .....+..       ........+  .+.+..+++++.|+.|++||+.......  .....+...+.+..+ .+++..
T Consensus       138 ~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (342)
T d1yfqa_         138 AVKNLNSNNT-------KVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG  208 (342)
T ss_dssp             EEEESCSSSS-------SSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCE
T ss_pred             eecccccccc-------cceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCE
Confidence              22221110       122333444  5678899999999999999998754322  222333445555555 456789


Q ss_pred             EEEEeCCCcEEEEEccCCeEE---------e------eeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceee
Q 014154          273 IYIGNGSGDLASVDIRTGKLL---------G------CFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       273 l~~~~~d~~i~iwd~~~~~~~---------~------~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  337 (430)
                      +++++.||.+.+|++......         .      ....| ...|++++|+|++.+|++|+.||.|+|||+++++.+.
T Consensus       209 ~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL-AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             EEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS-CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcc-cccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence            999999999999998643211         1      11233 6679999999999999999999999999999999888


Q ss_pred             EEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          338 AVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       338 ~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .+  ..+..  ...++|+|+|.+ ++++.|+.+++|....
T Consensus       288 ~~--~~~~~--~~~~~~s~~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         288 NF--AKFNE--DSVVKIACSDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             EC--CCCSS--SEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred             Ee--cCCCC--CEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence            73  32212  345788888888 7888888888887644

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.5e-27  Score=211.47  Aligned_cols=239  Identities=14%  Similarity=0.076  Sum_probs=175.7

Q ss_pred             CCCCcceeeecCCCceEEEEccCCCCCc---ceeeeecCCCCCCcceeeeeecCCCCCceeEEee--cCCeEEEecCCCC
Q 014154           11 GCPPLRALTFDSLGLIKVIEARGEHGGV---PKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR--KNGLTDILNPLNG   85 (430)
Q Consensus        11 ~~~~~~l~t~~~dg~i~vw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~--~dg~i~iwd~~~~   85 (430)
                      .+....+++|+.||+|+|||+..+....   ......+..|..++.  ++.|  +|+|++|++++  .++.+.+|++.++
T Consensus        74 ~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~--~v~~--s~~~~~l~~~~~~~~~~~~~~~~~~~  149 (325)
T d1pgua1          74 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS--DISW--DFEGRRLCVVGEGRDNFGVFISWDSG  149 (325)
T ss_dssp             STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE--EEEE--CTTSSEEEEEECCSSCSEEEEETTTC
T ss_pred             CCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE--EEEE--CCCCCccceeeccccceEEEEeeccc
Confidence            3344578899999999999997642110   011233455777744  4555  67888888765  4667888887655


Q ss_pred             cccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154           86 DLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (430)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i  165 (430)
                      +.+..+.                                                                   .|...|
T Consensus       150 ~~~~~~~-------------------------------------------------------------------~h~~~v  162 (325)
T d1pgua1         150 NSLGEVS-------------------------------------------------------------------GHSQRI  162 (325)
T ss_dssp             CEEEECC-------------------------------------------------------------------SCSSCE
T ss_pred             ccceeee-------------------------------------------------------------------eccccc
Confidence            4322211                                                                   345678


Q ss_pred             EEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC-CCEEEEEeCCCcEEEEE
Q 014154          166 AFSKVDISEKF-SLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD-HRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       166 ~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd  243 (430)
                      .+++|+|++.+ +++++.|+.|++||+...+.......+..      +...|.+++|  +|+ +.+|++++.|+.|++||
T Consensus       163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~------~~~~v~~v~~--~pd~~~~l~s~~~d~~i~iwd  234 (325)
T d1pgua1         163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK------QGSFVRDVEF--SPDSGEFVITVGSDRKISCFD  234 (325)
T ss_dssp             EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC------TTCCEEEEEE--CSTTCCEEEEEETTCCEEEEE
T ss_pred             ccccccccccceEEEeecccccccccccccccceecccccC------CCCccEEeee--ccccceeccccccccceeeee
Confidence            88899987764 67899999999999988877666554322      2367999999  775 68999999999999999


Q ss_pred             CCCCCcceEEEeecCCCeEEEEec---CCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCC--CeEEEEecCC-CCeEE
Q 014154          244 TSAQRRPVMSFDFRETPIKAVAEE---PDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSG--SIRSIARHPT-LPIIA  317 (430)
Q Consensus       244 ~~~~~~~~~~~~~~~~~i~~~~~s---p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~v~~i~~~~~-~~~l~  317 (430)
                      +++++ .+..+.+|..++.++.|+   |++++|++++.|+.|+|||+++++++..+..| ..  .+..+++.+. +.+|+
T Consensus       235 ~~~~~-~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~  312 (325)
T d1pgua1         235 GKSGE-FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD-KQQLGNQQVGVVATGNGRII  312 (325)
T ss_dssp             TTTCC-EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC-TTCGGGCEEEEEEEETTEEE
T ss_pred             ecccc-ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec-CCcccCeEEEEEECCCCEEE
Confidence            99866 478888888777665555   68999999999999999999999999888765 33  2334444332 34789


Q ss_pred             EEeCCCcEEEEEC
Q 014154          318 SCGLDSYLRFWDI  330 (430)
Q Consensus       318 s~~~dg~i~iwd~  330 (430)
                      +++.||.|+|||+
T Consensus       313 s~s~dg~i~vwdl  325 (325)
T d1pgua1         313 SLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTSCEEEEET
T ss_pred             EEECCCEEEEEEC
Confidence            9999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.3e-26  Score=205.33  Aligned_cols=282  Identities=11%  Similarity=0.024  Sum_probs=193.8

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      -.|++|+.||+|+|||+..+ .....+.. ..+|..+|.+++|+.   +++.+|++|+.||.|++|++..+.........
T Consensus        24 ~~L~s~s~Dg~v~iwd~~~~-~~~~~~~~-~~~h~~~V~~v~f~~---~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~   98 (342)
T d1yfqa_          24 SLLLITSWDGSLTVYKFDIQ-AKNVDLLQ-SLRYKHPLLCCNFID---NTDLQIYVGTVQGEILKVDLIGSPSFQALTNN   98 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETT-TTEEEEEE-EEECSSCEEEEEEEE---SSSEEEEEEETTSCEEEECSSSSSSEEECBSC
T ss_pred             CEEEEEECCCeEEEEEccCC-CcceEEEE-ecCCCCCEEEEEEeC---CCCCEEEEcccccceeeeeccccccccccccc
Confidence            46889999999999999874 12222333 335888877666654   23468999999999999999877655554332


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeee---cCCCceEEEEEc
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNV---CASGTIAFSKVD  171 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~---~~~~~i~~~~~~  171 (430)
                      .        ........+....       ..+++++.++.+.+|++.....      ........   ........+.+.
T Consensus        99 ~--------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~wd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  157 (342)
T d1yfqa_          99 E--------ANLGICRICKYGD-------DKLIAASWDGLIEVIDPRNYGD------GVIAVKNLNSNNTKVKNKIFTMD  157 (342)
T ss_dssp             C--------CCSCEEEEEEETT-------TEEEEEETTSEEEEECHHHHTT------BCEEEEESCSSSSSSCCCEEEEE
T ss_pred             c--------ccccccccccccc-------ccccccccccccceeecccccc------ceeeecccccccccceeeeeeee
Confidence            1        1222223333333       5889999999999998754332      01111111   112334556677


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc-
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP-  250 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-  250 (430)
                      +.+..+++++.|+.|++||+..............      ....+.+..+. +.++..+++++.||.+.+|++...... 
T Consensus       158 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~s~dg~~~v~~~~~~~~~~  230 (342)
T d1yfqa_         158 TNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG------LKYQIRDVALL-PKEQEGYACSSIDGRVAVEFFDDQGDDY  230 (342)
T ss_dssp             ECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS------CSSCEEEEEEC-SGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred             ccCCceeeecCCCcEEEEecccCcccceeeeecc------cccceeeeEee-cCCCCEEEeecCCCeEEEEEecCCccee
Confidence            7889999999999999999976543322111110      01334455553 567789999999999999998753210 


Q ss_pred             ----eEE---------EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          251 ----VMS---------FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       251 ----~~~---------~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                          ...         ...|...+++++|+|++++|++|+.||.|++||+++++.+..+..++  .+..++|+|++.+|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--~~~~~~~s~~~~~l~  308 (342)
T d1yfqa_         231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIACSDNILC  308 (342)
T ss_dssp             TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEEECSSEEE
T ss_pred             eccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC--CCEEEEEEeCCCEEE
Confidence                111         12456689999999999999999999999999999999998887643  445677888999999


Q ss_pred             EEeCCCcEEEEECC
Q 014154          318 SCGLDSYLRFWDIK  331 (430)
Q Consensus       318 s~~~dg~i~iwd~~  331 (430)
                      +++.|+.+++|...
T Consensus       309 ~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         309 LATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEECTHHHHCSSS
T ss_pred             EEEcCCcEEEeeee
Confidence            99999988888653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=1.1e-22  Score=178.55  Aligned_cols=272  Identities=14%  Similarity=0.092  Sum_probs=202.6

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeE-EeecCCeEEEecCCCCcccceeeccC
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLA-VARKNGLTDILNPLNGDLRVAISNAG   95 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~~~~   95 (430)
                      .+++..|++|.|||+.++     +++.++.....   ...+.+  +|||++|+ +++.++.|++||+.+++.+..+..+ 
T Consensus         5 yV~~~~~~~v~v~D~~t~-----~~~~~i~~g~~---p~~va~--spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-   73 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSN-----KVTATIPVGSN---PMGAVI--SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-   73 (301)
T ss_dssp             EEEETTTTEEEEEETTTT-----EEEEEEECSSS---EEEEEE--CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-
T ss_pred             EEEECCCCEEEEEECCCC-----eEEEEEECCCC---ceEEEE--eCCCCEEEEEECCCCEEEEEECCCCceeeeeecc-
Confidence            467889999999999998     78877764433   344556  78998875 5678899999999999988877653 


Q ss_pred             CCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCC
Q 014154           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEK  175 (430)
Q Consensus        96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~  175 (430)
                              .....+.+.....       ..++++..++.+.+|+.....        .+  ..+.......++.++|++.
T Consensus        74 --------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~dg~  128 (301)
T d1l0qa2          74 --------SSPQGVAVSPDGK-------QVYVTNMASSTLSVIDTTSNT--------VA--GTVKTGKSPLGLALSPDGK  128 (301)
T ss_dssp             --------SSEEEEEECTTSS-------EEEEEETTTTEEEEEETTTTE--------EE--EEEECSSSEEEEEECTTSS
T ss_pred             --------ccccccccccccc-------cccccccccceeeecccccce--------ee--eeccccccceEEEeecCCC
Confidence                    2344455544433       355666677788888754221        22  2334456788999999998


Q ss_pred             EEEE-EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-CcEEEEECCCCCcceEE
Q 014154          176 FSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQVRLYDTSAQRRPVMS  253 (430)
Q Consensus       176 ~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~  253 (430)
                      .++. +..++.+.+|+..+......+...          ..+..+++  ++++..+++++.+ +.+.+|+.... .....
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  195 (301)
T d1l0qa2         129 KLYVTNNGDKTVSVINTVTKAVINTVSVG----------RSPKGIAV--TPDGTKVYVANFDSMSISVIDTVTN-SVIDT  195 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECC----------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTT-EEEEE
T ss_pred             eeeeeeccccceeeeeccccceeeecccC----------CCceEEEe--eccccceeeecccccccccccccce-eeeec
Confidence            8764 556788999999999888776554          34678888  7888888877765 55667777653 33444


Q ss_pred             EeecCCCeEEEEecCCCCEEEEEeC---CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeE-EEEeCCCcEEEEE
Q 014154          254 FDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPII-ASCGLDSYLRFWD  329 (430)
Q Consensus       254 ~~~~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~i~iwd  329 (430)
                      +.. ...+..++|++++..++++..   ++.|++||+.+++.+..+..+  ..+.+++|+|||++| ++++.|+.|++||
T Consensus       196 ~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~--~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         196 VKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG--PDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             EEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccc-cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC--CCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            443 356788999999998877654   367999999999998888764  568999999999976 5777899999999


Q ss_pred             CCCCceeeEEE
Q 014154          330 IKTRQLLSAVF  340 (430)
Q Consensus       330 ~~~~~~~~~~~  340 (430)
                      +++++.+.++.
T Consensus       273 ~~t~~~~~~~~  283 (301)
T d1l0qa2         273 TATNTITATMA  283 (301)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCeEEEEEe
Confidence            99999998864

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=3.7e-25  Score=199.70  Aligned_cols=308  Identities=11%  Similarity=0.054  Sum_probs=217.5

Q ss_pred             CcceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCC--eEEEecCCCCccccee
Q 014154           14 PLRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNG--LTDILNPLNGDLRVAI   91 (430)
Q Consensus        14 ~~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg--~i~iwd~~~~~~~~~~   91 (430)
                      +.++++...+|.|.+|++.++     ..++ + .|...  +.++.|  +|||++|++++.+.  .|++||+.+++... +
T Consensus        14 dG~~~a~~~~g~v~v~d~~~~-----~~~~-~-~~~~~--v~~~~~--spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~   81 (360)
T d1k32a3          14 DGDLIAFVSRGQAFIQDVSGT-----YVLK-V-PEPLR--IRYVRR--GGDTKVAFIHGTREGDFLGIYDYRTGKAEK-F   81 (360)
T ss_dssp             GGGCEEEEETTEEEEECTTSS-----BEEE-C-SCCSC--EEEEEE--CSSSEEEEEEEETTEEEEEEEETTTCCEEE-C
T ss_pred             CCCEEEEEECCeEEEEECCCC-----cEEE-c-cCCCC--EEEEEE--CCCCCEEEEEEcCCCCEEEEEECCCCcEEE-e
Confidence            456666667899999999886     4443 3 47666  455666  88999998866553  79999998776443 2


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD  171 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~  171 (430)
                      .        .+...+..+.+.+..        ..+++++.++.+.+|++....        ...++. .+...+.+++|+
T Consensus        82 ~--------~~~~~v~~~~~spdg--------~~l~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~s  136 (360)
T d1k32a3          82 E--------ENLGNVFAMGVDRNG--------KFAVVANDRFEIMTVDLETGK--------PTVIER-SREAMITDFTIS  136 (360)
T ss_dssp             C--------CCCCSEEEEEECTTS--------SEEEEEETTSEEEEEETTTCC--------EEEEEE-CSSSCCCCEEEC
T ss_pred             e--------CCCceEEeeeecccc--------cccceeccccccccccccccc--------eeeeee-cccccccchhhc
Confidence            2        234577777766544        489999999999999875332        333433 566788899999


Q ss_pred             CCCCEEEEEe----------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          172 ISEKFSLFGG----------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       172 ~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      |++++|+.+.          .++.+++|++.+++........          ..+..++|  +|+++.|++++.++.+.+
T Consensus       137 pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~----------~~~~~~~~--spdg~~l~~~s~~~~~~~  204 (360)
T d1k32a3         137 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN----------SHDYAPAF--DADSKNLYYLSYRSLDPS  204 (360)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSS----------SBEEEEEE--CTTSCEEEEEESCCCCCE
T ss_pred             cceeeeeeeccccccceeeccccceeeeccccCceeeecccc----------cccccccc--cCCCCEEEEEeCCCceEc
Confidence            9999998654          3456999999887765443322          55778888  899999999999999999


Q ss_pred             EECCCCCc------ceEEEeecCCCeEEEEecCCCCEEEEEeCCC-----cEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154          242 YDTSAQRR------PVMSFDFRETPIKAVAEEPDSFNIYIGNGSG-----DLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (430)
Q Consensus       242 wd~~~~~~------~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~  310 (430)
                      ||......      ....+..|...+..+.|+|++..++++..+.     .+..+++..+... .+..+ ...+..+.+.
T Consensus       205 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~  282 (360)
T d1k32a3         205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR-MIIPL-ESSILIYSVP  282 (360)
T ss_dssp             ECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE-EEEEC-SSEEEEEECC
T ss_pred             ccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCcee-Eeeec-CCCceEEEEE
Confidence            99765321      1233444556666677888887776655432     2444444444432 33333 4556666665


Q ss_pred             CCC---CeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCcc
Q 014154          311 PTL---PIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       311 ~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~~  379 (430)
                      +.+   .++++++.++.|++||+.+++...   +.+    .+.+++|+|||++ ++++.||.|++|+.....+
T Consensus       283 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---~~~----~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         283 VHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---VKN----NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             CCCSHHHHHHCCCCCEEEEEEETTTCCEEE---EEE----EEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred             ecCCCeeEEEecCCCCEEEEEECCCCeEEE---ecC----CcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence            554   467888999999999999876533   222    3689999999998 8899999999999977543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=4.5e-23  Score=190.73  Aligned_cols=299  Identities=14%  Similarity=0.055  Sum_probs=197.6

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceee--
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAIS--   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~--   92 (430)
                      ..+++...||+|+|||+.++     +++.++..+..   ..++.|  +|||++|++++.||+|++||+.+++.....+  
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~-----~~~~~l~~g~~---~~~vaf--SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSK-----KIVKVIDTGYA---VHISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTC-----SEEEEEECCSS---EEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCC-----cEEEEEeCCCC---eeEEEE--CCCCCEEEEEeCCCCEEEEEccCCceeEEEEEe
Confidence            45788999999999999998     88888887643   345566  8899999999999999999999887543322  


Q ss_pred             c-------cCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc--------------------
Q 014154           93 N-------AGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV--------------------  145 (430)
Q Consensus        93 ~-------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~--------------------  145 (430)
                      .       .....|+|....+                   ++++..++.+.+|+......                    
T Consensus       103 ~~~~~~~~~~s~~~spDG~~l-------------------~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2         103 IGIEARSVESSKFKGYEDRYT-------------------IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             CCSEEEEEEECCSTTCTTTEE-------------------EEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred             CCCCCcceEEeeeecCCCCEE-------------------EEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence            1       1122233322222                   22233444444444221100                    


Q ss_pred             ----cccCCCc-----------ce-----------EEeeecCCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeE
Q 014154          146 ----SAESSCS-----------TV-----------KSWNVCASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIW  198 (430)
Q Consensus       146 ----~~~~~~~-----------~i-----------~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~  198 (430)
                          +..+.++           .+           .+....+...+..+.++|++++++++. .+..+.+++..+++.+.
T Consensus       164 ~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~  243 (426)
T d1hzua2         164 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  243 (426)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEE
Confidence                0111111           11           222223455678899999999888776 45678999999988876


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE--EEeCCCcEEEEECCCCC------cceEEEeecCCCeEEEEecCCC
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV--AGTNDHQVRLYDTSAQR------RPVMSFDFRETPIKAVAEEPDS  270 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~--s~~~dg~i~iwd~~~~~------~~~~~~~~~~~~i~~~~~sp~~  270 (430)
                      ........       .+.....+. .+....+.  +.+.|+.+.+|+.....      .....+.+|...+..++|+|++
T Consensus       244 ~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg  315 (426)
T d1hzua2         244 LVDVGKTP-------HPGRGANFV-HPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS  315 (426)
T ss_dssp             EEECSSCC-------CCSCCEEEE-ETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC
T ss_pred             EeccCCcc-------cccceeeee-cCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC
Confidence            65543211       222233332 22222222  23357788888765421      3467889999999999999999


Q ss_pred             CEEEE-------EeCCCcEEEEEccCCeEEeeee---------CCCCCCeEEEEecCCCCeEEEE-----eCCCcEEEEE
Q 014154          271 FNIYI-------GNGSGDLASVDIRTGKLLGCFI---------GKCSGSIRSIARHPTLPIIASC-----GLDSYLRFWD  329 (430)
Q Consensus       271 ~~l~~-------~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~v~~i~~~~~~~~l~s~-----~~dg~i~iwd  329 (430)
                      ++|++       +..+++|++||+++++...++.         .+ ...|..++|||||++++.+     +.++.|+|||
T Consensus       316 ~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~-~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         316 SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG-AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-CCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCC-CccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence            99995       4557899999999988765542         23 5679999999999877443     3578899999


Q ss_pred             CCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          330 IKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      .++++....  +.++.       .++|+|++
T Consensus       395 ~~T~k~~~~--i~~~~-------~~tp~Gk~  416 (426)
T d1hzua2         395 DKTLKLKAV--VKDPR-------LITPTGKF  416 (426)
T ss_dssp             TTTTEEEEE--ECCTT-------CCSEEEEE
T ss_pred             CCCCeEEEE--ECCCC-------ccCCCceE
Confidence            999998887  44441       45788887

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=2.6e-23  Score=185.60  Aligned_cols=298  Identities=12%  Similarity=0.034  Sum_probs=195.2

Q ss_pred             ceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceeecc
Q 014154           16 RALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        16 ~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      .++|++.|++|+|||+.++     +++..+..+........+.+  +|||++| ++++.++.|.+||+.+++.+..+...
T Consensus         3 ~~vt~~~d~~v~v~D~~s~-----~~~~~i~~~~~~~~~~~i~~--spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKM-----AVDKVITIADAGPTPMVPMV--APGGRIAYATVNKSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEETTTEEEEEETTTT-----EEEEEEECTTCTTCCCCEEE--CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECC
T ss_pred             EEEEEcCCCEEEEEECCCC-----eEEEEEECCCCCCCccEEEE--CCCCCEEEEEECCCCeEEEEECCCCcEEEEEecC
Confidence            4789999999999999998     78877765544333455566  7899887 45778999999999999988776642


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEee---------ecCCCce
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWN---------VCASGTI  165 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~---------~~~~~~i  165 (430)
                      ......   ..+..+.+.+..        ..++.+..+.....+.....       +..+.+|+         ......+
T Consensus        76 ~~~~~~---~~~~~v~~s~dg--------~~l~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~~~~~  137 (337)
T d1pbyb_          76 TPEERV---KSLFGAALSPDG--------KTLAIYESPVRLELTHFEVQ-------PTRVALYDAETLSRRKAFEAPRQI  137 (337)
T ss_dssp             BTTEEE---ECTTCEEECTTS--------SEEEEEEEEEEECSSCEEEC-------CCEEEEEETTTTEEEEEEECCSSC
T ss_pred             CCcccc---cceeeEEEcCCC--------cEEEEeecCCcceeeecccc-------ccceeeccccCCeEEEeccccCCc
Confidence            111000   011112222221        23433333222222211111       11222222         2334567


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcc------------eeEEEEeecCCCCEEEEE
Q 014154          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW------------FTSAAFLSIDDHRKFVAG  233 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------------v~~~~~~~~~~~~~l~s~  233 (430)
                      ..++|+|+++++++++.  .+.+||..+++....+..+.........+..            ..........+...+..+
T Consensus       138 ~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (337)
T d1pbyb_         138 TMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT  215 (337)
T ss_dssp             CCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred             eEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeec
Confidence            88999999999998865  4788999998887776554322111100000            000000001111112222


Q ss_pred             eCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCC
Q 014154          234 TNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTL  313 (430)
Q Consensus       234 ~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~  313 (430)
                      ..++.+.+||..++......+..+...+..+.++|++.+++.+  ++.|++||+.+++.+..+..  ...+.+++|+|||
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dG  291 (337)
T d1pbyb_         216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDG  291 (337)
T ss_dssp             GEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTS
T ss_pred             ccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC--CCCEEEEEECCCC
Confidence            3455799999998775555566677788999999999988766  58899999999999988865  5678999999999


Q ss_pred             CeEEEEeCCCcEEEEECCCCceeeEEEeecc
Q 014154          314 PIIASCGLDSYLRFWDIKTRQLLSAVFLKQH  344 (430)
Q Consensus       314 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  344 (430)
                      ++|++++.|+.|+|||+.+++.+.++.+.+.
T Consensus       292 ~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g~  322 (337)
T d1pbyb_         292 STVWLGGALGDLAAYDAETLEKKGQVDLPGN  322 (337)
T ss_dssp             CEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEEECCCC
Confidence            9999999999999999999999998766554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=6.6e-21  Score=176.03  Aligned_cols=284  Identities=11%  Similarity=0.092  Sum_probs=196.2

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      -++++.+.||+|+|||+.+++.+..+..+         ..+.++.+.+..        ..+++++.++.+.+|++.... 
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g---------~~~~~vafSPDG--------k~l~~~~~d~~v~vwd~~t~~-   94 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTG---------YAVHISRMSASG--------RYLLVIGRDARIDMIDLWAKE-   94 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECC---------SSEEEEEECTTS--------CEEEEEETTSEEEEEETTSSS-
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCC---------CCeeEEEECCCC--------CEEEEEeCCCCEEEEEccCCc-
Confidence            35677889999999999999999988753         345566665543        477888899999999986443 


Q ss_pred             cccCCCcceEEeeecC----CCceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCC--CCcCCcceeE
Q 014154          146 SAESSCSTVKSWNVCA----SGTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSL--GIFTPTWFTS  218 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~----~~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~~  218 (430)
                             ...+..+..    ...+.+++|+|+|++|+++ ..++.+.+||..++........+.....  ..........
T Consensus        95 -------~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (426)
T d1hzua2          95 -------PTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAA  167 (426)
T ss_dssp             -------CEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEE
T ss_pred             -------eeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeE
Confidence                   222333322    2345566778899987655 5789999999999888776655432211  1112233445


Q ss_pred             EEEeecCCCCEEEEEeC-CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCCeE----
Q 014154          219 AAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKL----  292 (430)
Q Consensus       219 ~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~----  292 (430)
                      +.+  ++++..++.... .+.+.+++.............+...+..+.|+|++++++++.. +..+.+++..+++.    
T Consensus       168 i~~--s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~  245 (426)
T d1hzua2         168 IIA--SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  245 (426)
T ss_dssp             EEE--CSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             EEE--CCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence            555  677776665544 4567777776655444455567788999999999998887753 34566666554433    


Q ss_pred             --------------------------------------------------EeeeeCCCCCCeEEEEecCCCCeEEE----
Q 014154          293 --------------------------------------------------LGCFIGKCSGSIRSIARHPTLPIIAS----  318 (430)
Q Consensus       293 --------------------------------------------------~~~~~~~~~~~v~~i~~~~~~~~l~s----  318 (430)
                                                                        ...+.+| ...+..++|+|++++|++    
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~-~~~v~~v~~sPdg~~l~v~~~~  324 (426)
T d1hzua2         246 DVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ-GGGSLFIKTHPKSSHLYVDTTF  324 (426)
T ss_dssp             ECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS-SSCCCCEECCTTCSEEEECCTT
T ss_pred             ccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC-CCceeEEEcCCCCceEEEeecC
Confidence                                                              3344455 677899999999999984    


Q ss_pred             ---EeCCCcEEEEECCCCceeeEEEe-------eccccceEEeeeccccccc--cc----cCCCCceEecCCCCCc
Q 014154          319 ---CGLDSYLRFWDIKTRQLLSAVFL-------KQHLNEVVFDSAFADKEVA--NA----AADAPMLEIQNGNDTQ  378 (430)
Q Consensus       319 ---~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~g~~--~~----~~~d~~i~~~~~~~~~  378 (430)
                         ++.|++|+|||+.+++...++..       ..+ ...+.+++|||||+.  ++    .+.++.|+|||.....
T Consensus       325 ~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~-~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         325 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG-AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-CCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred             CCCcccCCEEEEEECCCCCcCeEEeccchhcccCCC-CccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence               45678999999999988766421       122 334789999999986  32    3568899999988754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=9e-20  Score=159.66  Aligned_cols=263  Identities=12%  Similarity=0.089  Sum_probs=197.5

Q ss_pred             EEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCcccc
Q 014154           69 AVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAE  148 (430)
Q Consensus        69 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  148 (430)
                      ++++.|++|.|||+.+++.+..+..-         .....+.+.+...       ..++++..++.+.+|++....    
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g---------~~p~~va~spdG~-------~l~v~~~~~~~i~v~d~~t~~----   65 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVG---------SNPMGAVISPDGT-------KVYVANAHSNDVSIIDTATNN----   65 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECS---------SSEEEEEECTTSS-------EEEEEEGGGTEEEEEETTTTE----
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECC---------CCceEEEEeCCCC-------EEEEEECCCCEEEEEECCCCc----
Confidence            45778999999999999988887641         2445566554433       234677788999999975332    


Q ss_pred             CCCcceEEeeecCCCceEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC
Q 014154          149 SSCSTVKSWNVCASGTIAFSKVDISEKFSLF-GGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH  227 (430)
Q Consensus       149 ~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  227 (430)
                          .+..+.  ....+..+++++++..+++ +..++.+.+|+..+++....+..+          ..+.++.|  +|++
T Consensus        66 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~dg  127 (301)
T d1l0qa2          66 ----VIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----------KSPLGLAL--SPDG  127 (301)
T ss_dssp             ----EEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----------SSEEEEEE--CTTS
T ss_pred             ----eeeeee--ccccccccccccccccccccccccceeeecccccceeeeecccc----------ccceEEEe--ecCC
Confidence                344443  3456789999999986655 556778999999999888776654          44677888  8888


Q ss_pred             CEEE-EEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-CcEEEEEccCCeEEeeeeCCCCCCeE
Q 014154          228 RKFV-AGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRTGKLLGCFIGKCSGSIR  305 (430)
Q Consensus       228 ~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~v~  305 (430)
                      ..++ ++..++.+.+|+..+.. .+..+..+ ..+..++++|++..+++++.+ +.+.+|+....+....+..  ...+.
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  203 (301)
T d1l0qa2         128 KKLYVTNNGDKTVSVINTVTKA-VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPS  203 (301)
T ss_dssp             SEEEEEETTTTEEEEEETTTTE-EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEE
T ss_pred             Ceeeeeeccccceeeeeccccc-eeeecccC-CCceEEEeeccccceeeecccccccccccccceeeeecccc--cCCcc
Confidence            8765 45567889999999855 35555544 568899999999988888765 6677888888877777765  35678


Q ss_pred             EEEecCCCCeEEEEe---CCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154          306 SIARHPTLPIIASCG---LDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~  377 (430)
                      .++|++++..++.++   .++.|++||+.+++.+..+..  +  ..+.+++|+|||++  ++++.++.|.+||....
T Consensus       204 ~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~--~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--G--PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--C--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--C--CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            899999999876654   346899999999999887532  2  23589999999986  57778999999998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=7.2e-22  Score=182.40  Aligned_cols=320  Identities=11%  Similarity=0.033  Sum_probs=213.1

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCcee-EEeecCCeEEEecCCCCcccceeec
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLL-AVARKNGLTDILNPLNGDLRVAISN   93 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l-~~g~~dg~i~iwd~~~~~~~~~~~~   93 (430)
                      .++++++.||.|++||+.++.......+....+|.    -++++...+|||++| ++++.++.|+|||..+++++..+..
T Consensus        74 ~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~----~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~  149 (432)
T d1qksa2          74 RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR----SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST  149 (432)
T ss_dssp             CEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE----EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC----CeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeecc
Confidence            45778899999999999875211111222222232    234444458999986 6688899999999999998887765


Q ss_pred             cCC----CCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEE
Q 014154           94 AGD----SGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSK  169 (430)
Q Consensus        94 ~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~  169 (430)
                      +..    ..+.+ ......+.+.+...       ..+++...++.+.+++....        ...+++.+.++..+..++
T Consensus       150 ~~~~~~~~~~~~-~~~~~~v~~s~dg~-------~~~vs~~~~~~i~~~d~~~~--------~~~~~~~i~~g~~~~~~~  213 (432)
T d1qksa2         150 RGMTYDEQEYHP-EPRVAAILASHYRP-------EFIVNVKETGKILLVDYTDL--------NNLKTTEISAERFLHDGG  213 (432)
T ss_dssp             CEECTTTCCEES-CCCEEEEEECSSSS-------EEEEEETTTTEEEEEETTCS--------SEEEEEEEECCSSEEEEE
T ss_pred             CCccccceeccC-CCceeEEEECCCCC-------EEEEEEccCCeEEEEEccCC--------CcceEEEEcccCccccce
Confidence            321    11112 22333333333222       24566667778888875422        256778878888899999


Q ss_pred             EcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCC
Q 014154          170 VDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQ  247 (430)
Q Consensus       170 ~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~  247 (430)
                      |+|+++++++++. ++.+.++|..+.+....+......    .+........+  +..+...++.. .++.|.+|+....
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~----~~~~~~~~~~~--~~~g~~~~~~~lg~~~v~~~~~~~~  287 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT----PHPGRGANFVH--PTFGPVWATSHMGDDSVALIGTDPE  287 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS----BCCTTCEEEEE--TTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccc----cccCcccceec--CCCCceecccccCCceEEecccccc
Confidence            9999998877765 567999999988877665443211    11122333333  44444444433 3778999987653


Q ss_pred             CcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEE
Q 014154          248 RRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRF  327 (430)
Q Consensus       248 ~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~i  327 (430)
                      .     ...|...+....++|++..+++++.++..++|+..+..      .| ......+++ ||++.|++++.|+.+++
T Consensus       288 ~-----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~-~~~~~sv~v-pDg~~la~~s~d~~~k~  354 (432)
T d1qksa2         288 G-----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PE-AEISGSVAV-FDIKAMTGDGSDPEFKT  354 (432)
T ss_dssp             T-----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC------SS-HHHHTCEEE-EEGGGCCCSSSCCCEEE
T ss_pred             c-----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC------CC-CCeeeEEEE-EechhhcccccCCceEe
Confidence            2     23455678899999999999999999999999865432      22 333344554 89999999999999999


Q ss_pred             EECCCCceeeEEEeeccccceEEeeecccccccc-cc-----CCCCceEecCCCCCcc
Q 014154          328 WDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVAN-AA-----ADAPMLEIQNGNDTQE  379 (430)
Q Consensus       328 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~-~~-----~~d~~i~~~~~~~~~~  379 (430)
                      |++.++..+.     .| ...+.+++|||||+.+ ++     ..++.|.|||....+.
T Consensus       355 w~~~~~~~l~-----~~-~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         355 LPIAEWAGIT-----EG-QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             ECHHHHHTCC-----SS-CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cccccccccC-----CC-CCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            9987664432     24 2346899999999863 22     3578999999888644

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=5.2e-21  Score=171.04  Aligned_cols=298  Identities=9%  Similarity=-0.007  Sum_probs=183.8

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCC-CCCCcceeeeeecCCCCCceeE-EeecCCeEEEecCCCCcccceee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGD-PHSSNCVLAASIDDSQNDPLLA-VARKNGLTDILNPLNGDLRVAIS   92 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~g~~l~-~g~~dg~i~iwd~~~~~~~~~~~   92 (430)
                      -.+++++.++.|.|||+.++     +++.++.. +.....  ++.+  +|||++++ ++..++.|.+||+.+++.+..+.
T Consensus         9 ~~l~~~~~~~~v~v~D~~t~-----~~~~t~~~~~~~~p~--~l~~--spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           9 EYMIVTNYPNNLHVVDVASD-----TVYKSCVMPDKFGPG--TAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             EEEEEEETTTEEEEEETTTT-----EEEEEEECSSCCSSC--EEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEcCCCEEEEEECCCC-----CEEEEEEcCCCCCcc--eEEE--CCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            46889999999999999998     78877653 333433  4445  78888874 56688999999999998877665


Q ss_pred             ccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecC-----------
Q 014154           93 NAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCA-----------  161 (430)
Q Consensus        93 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~-----------  161 (430)
                      ......  .....+..+.+.+..        ..++++..+.....+.       ....+..+.+|+...           
T Consensus        80 ~~~~~~--~~~~~~~~v~~s~DG--------~~l~v~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~  142 (346)
T d1jmxb_          80 LSSVPG--EVGRSMYSFAISPDG--------KEVYATVNPTQRLNDH-------YVVKPPRLEVFSTADGLEAKPVRTFP  142 (346)
T ss_dssp             SCCSTT--EEEECSSCEEECTTS--------SEEEEEEEEEEECSSC-------EEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             cccccc--ccCCceEEEEEecCC--------CEEEEEecCCcceeee-------eccCcceEEEEecccceeeeEEEeee
Confidence            411100  000001112222111        1232222111111110       001122333333322           


Q ss_pred             -CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC------------cc--eeEEEEeecCC
Q 014154          162 -SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP------------TW--FTSAAFLSIDD  226 (430)
Q Consensus       162 -~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~------------~~--v~~~~~~~~~~  226 (430)
                       ...+..+.+++++..++++   +.+.+|++.+++.+..+..+.........+            ..  +........+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (346)
T d1jmxb_         143 MPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  219 (346)
T ss_dssp             CCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             ccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccC
Confidence             2234445566666555432   468899999888877765432211100000            00  00111111233


Q ss_pred             CCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEE
Q 014154          227 HRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS  306 (430)
Q Consensus       227 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~  306 (430)
                      ...++++..+..+.+||+.++......+..|...+..+.+++++.+++... ++.|.+||+.+++.+..+..  ...+.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~--~~~~~~  296 (346)
T d1jmxb_         220 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL--DHTYYC  296 (346)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC--SSCCCE
T ss_pred             ceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcC--CCCEEE
Confidence            344555666778999999987755556667888899999999998888765 46799999999999888875  457899


Q ss_pred             EEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeecc
Q 014154          307 IARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQH  344 (430)
Q Consensus       307 i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  344 (430)
                      ++|+|||++|++++.|+.|+|||+.+++.+.++.+.+.
T Consensus       297 va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         297 VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             EEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence            99999999999999999999999999999999765443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.2e-20  Score=173.99  Aligned_cols=285  Identities=12%  Similarity=0.042  Sum_probs=183.3

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeecc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNA   94 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~   94 (430)
                      +.+++.+.+|+|.|||..++     +++..+..+. .  ...+.|  +|||++|++++.||.|++||+.+++.....+  
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~-----~v~~~~~~g~-~--~~~v~f--SpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~--  100 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTY-----EIKTVLDTGY-A--VHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAE--  100 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTC-----CEEEEEECSS-C--EEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEE--
T ss_pred             EEEEEEcCCCEEEEEECCCC-----cEEEEEeCCC-C--eeEEEE--CCCCCEEEEEcCCCCEEEEEeeCCCceEEEE--
Confidence            55789999999999999998     8888887664 3  445566  8899999999999999999997766322211  


Q ss_pred             CCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           95 GDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        95 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                                    +...   .                                           .+.+.+.+..|+|+|
T Consensus       101 --------------i~~~---~-------------------------------------------~~~~~~~s~~~SpDG  120 (432)
T d1qksa2         101 --------------IKIG---S-------------------------------------------EARSIETSKMEGWED  120 (432)
T ss_dssp             --------------EECC---S-------------------------------------------EEEEEEECCSTTCTT
T ss_pred             --------------EecC---C-------------------------------------------CCCCeEEecccCCCC
Confidence                          0000   0                                           011223334678899


Q ss_pred             CEE-EEEeCCCeEEEEECCCCeeeEeeCCCCCCC--CCCcCCcceeEEEEeecCCCCEE-EEEeCCCcEEEEECCCCCcc
Q 014154          175 KFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNS--LGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVRLYDTSAQRRP  250 (430)
Q Consensus       175 ~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~  250 (430)
                      ++| +++..++.|++||..+++.+..+..+....  ...........+.+  +|++..+ ++...++.|.+||..+.+..
T Consensus       121 ~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--s~dg~~~~vs~~~~~~i~~~d~~~~~~~  198 (432)
T d1qksa2         121 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA--SHYRPEFIVNVKETGKILLVDYTDLNNL  198 (432)
T ss_dssp             TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE--CSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             CEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEE--CCCCCEEEEEEccCCeEEEEEccCCCcc
Confidence            986 677889999999999998887765543221  12223345667777  7888765 55667899999999876542


Q ss_pred             eEEEeecCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCCeEEeeeeCC----CCCCeEEEEecCCCCeEEEEe-CCCc
Q 014154          251 VMSFDFRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTGKLLGCFIGK----CSGSIRSIARHPTLPIIASCG-LDSY  324 (430)
Q Consensus       251 ~~~~~~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s~~-~dg~  324 (430)
                      ....-.+...+..++|+|+|+++++++. ++.+.++|..+++.+..+...    +........+...+...++.. .|+.
T Consensus       199 ~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~  278 (432)
T d1qksa2         199 KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS  278 (432)
T ss_dssp             EEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSE
T ss_pred             eEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCce
Confidence            2222234567889999999998887775 467899999988876655421    122233333433333333332 3556


Q ss_pred             EEEEECCCC-------ceeeEEEeec--------cc--------------cceEEeeeccccccc-cccCCCCceEecCC
Q 014154          325 LRFWDIKTR-------QLLSAVFLKQ--------HL--------------NEVVFDSAFADKEVA-NAAADAPMLEIQNG  374 (430)
Q Consensus       325 i~iwd~~~~-------~~~~~~~~~~--------~~--------------~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~  374 (430)
                      |.+|+....       +....+...+        +.              ......+++ ||++. ++++.|+.+++|+.
T Consensus       279 v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~  357 (432)
T d1qksa2         279 VALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPI  357 (432)
T ss_dssp             EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECH
T ss_pred             EEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEeccc
Confidence            666665432       1222211100        00              011123443 88888 88999999999975

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=1.4e-21  Score=175.89  Aligned_cols=275  Identities=14%  Similarity=0.057  Sum_probs=194.6

Q ss_pred             ecCCC-CCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCC--ee
Q 014154           59 IDDSQ-NDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKG--KA  135 (430)
Q Consensus        59 ~~~~p-~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~  135 (430)
                      .+.+| ||+++|+++ +|.|.+||+..+..+..          ++...+.++.|.+...        .++.++.+.  .+
T Consensus         8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~----------~~~~~v~~~~~spDg~--------~l~~~~~~~g~~v   68 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV----------PEPLRIRYVRRGGDTK--------VAFIHGTREGDFL   68 (360)
T ss_dssp             EEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC----------SCCSCEEEEEECSSSE--------EEEEEEETTEEEE
T ss_pred             ccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc----------cCCCCEEEEEECCCCC--------EEEEEEcCCCCEE
Confidence            34488 899999886 48999999987765432          2345788777765443        666555443  67


Q ss_pred             EEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcc
Q 014154          136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTW  215 (430)
Q Consensus       136 ~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  215 (430)
                      .+|++...         .++.+. .+...+.+++|+|++++|++++.++.+++|++.+++....+..+.         ..
T Consensus        69 ~v~d~~~~---------~~~~~~-~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  129 (360)
T d1k32a3          69 GIYDYRTG---------KAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE---------AM  129 (360)
T ss_dssp             EEEETTTC---------CEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS---------SC
T ss_pred             EEEECCCC---------cEEEee-CCCceEEeeeecccccccceeccccccccccccccceeeeeeccc---------cc
Confidence            88876432         344443 567889999999999999999999999999999988877766654         55


Q ss_pred             eeEEEEeecCCCCEEEEEe----------CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEE
Q 014154          216 FTSAAFLSIDDHRKFVAGT----------NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASV  285 (430)
Q Consensus       216 v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw  285 (430)
                      +.+++|  +|++++|+.+.          .++.+++||+.+++  ...+..+...+..++|+|+|++|++++.++.+.+|
T Consensus       130 ~~~~~~--spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~  205 (360)
T d1k32a3         130 ITDFTI--SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  205 (360)
T ss_dssp             CCCEEE--CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             ccchhh--ccceeeeeeeccccccceeeccccceeeeccccCc--eeeecccccccccccccCCCCEEEEEeCCCceEcc
Confidence            788999  89999998654          34569999999754  34555667788999999999999999999999999


Q ss_pred             EccCCeE-------EeeeeCCCCCCeEEEEecCCCCeEEEEeCCC-----cEEEEECCCCceeeEEEeeccccceEEeee
Q 014154          286 DIRTGKL-------LGCFIGKCSGSIRSIARHPTLPIIASCGLDS-----YLRFWDIKTRQLLSAVFLKQHLNEVVFDSA  353 (430)
Q Consensus       286 d~~~~~~-------~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  353 (430)
                      |......       ...+..+ ...+..+.|++++..++++..+.     .+..+++..+.........++ ...+....
T Consensus       206 d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  283 (360)
T d1k32a3         206 DRVVLNFSFEVVSKPFVIPLI-PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS-ILIYSVPV  283 (360)
T ss_dssp             CSSSSCEECCSCBEEEEEESS-TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSE-EEEEECCC
T ss_pred             cccccceeeccccceEEEecc-cCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCC-ceEEEEEe
Confidence            9765433       2233333 44555667788887776665442     244445555554433222333 22234445


Q ss_pred             ccccccc-cccCCCCceEecCCCCC
Q 014154          354 FADKEVA-NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       354 ~s~~g~~-~~~~~d~~i~~~~~~~~  377 (430)
                      +++++.+ +.++.++.+++|+....
T Consensus       284 ~~~~~~~~~~~~~~~~i~~~d~~~~  308 (360)
T d1k32a3         284 HGEFAAYYQGAPEKGVLLKYDVKTR  308 (360)
T ss_dssp             CCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred             cCCCeeEEEecCCCCEEEEEECCCC
Confidence            5555666 88889999999998764

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=1.3e-19  Score=161.09  Aligned_cols=271  Identities=11%  Similarity=0.049  Sum_probs=188.1

Q ss_pred             ceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCc
Q 014154           66 PLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        66 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  145 (430)
                      +||++++.|++|.|||+.+++.+..+.....      ...+.++.+.+...       ..++++..++.+.+|++.... 
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~------~~~~~~i~~spDg~-------~l~v~~~~~~~v~v~D~~t~~-   67 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADA------GPTPMVPMVAPGGR-------IAYATVNKSESLVKIDLVTGE-   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTC------TTCCCCEEECTTSS-------EEEEEETTTTEEEEEETTTCC-
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCC------CCCccEEEECCCCC-------EEEEEECCCCeEEEEECCCCc-
Confidence            4799999999999999999998888764211      11233455544322       234667788999999976433 


Q ss_pred             cccCCCcceEEeeecC----CCceEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEeeCCCCCCCCC
Q 014154          146 SAESSCSTVKSWNVCA----SGTIAFSKVDISEKFSLFGG------------KGVEVNVWDLDKCEKIWTAKPPPKNSLG  209 (430)
Q Consensus       146 ~~~~~~~~i~~~~~~~----~~~i~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~  209 (430)
                             .+.......    ...+..++|+|++++++++.            .+..+.+||..+++....+...      
T Consensus        68 -------~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------  134 (337)
T d1pbyb_          68 -------TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP------  134 (337)
T ss_dssp             -------EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC------
T ss_pred             -------EEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc------
Confidence                   333333221    12345789999999998776            3567899999999888776653      


Q ss_pred             CcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC------------------
Q 014154          210 IFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF------------------  271 (430)
Q Consensus       210 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~------------------  271 (430)
                          ..+..++|  +|++.++++++.  .+.+||..++. ....+..+... ....++|++.                  
T Consensus       135 ----~~~~~~~~--s~dg~~l~~~~~--~~~~~d~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (337)
T d1pbyb_         135 ----RQITMLAW--ARDGSKLYGLGR--DLHVMDPEAGT-LVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             ----SSCCCEEE--CTTSSCEEEESS--SEEEEETTTTE-EEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             ----CCceEEEE--cCCCCEEEEEcC--CcceeeeecCc-EEEEeecCCcc-ccceecCCcceeeccccccceeeeeeee
Confidence                44778899  899999998764  57789998855 34554433211 1111222211                  


Q ss_pred             ------EEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc
Q 014154          272 ------NIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL  345 (430)
Q Consensus       272 ------~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~  345 (430)
                            .+..+..++.+.+||+.++........++...+..+.++|++.+++.+  ++.|++||+.+++.+..+..    
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~----  278 (337)
T d1pbyb_         205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----  278 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC----
T ss_pred             eeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcC----
Confidence                  111122345689999998887554333336788889999999988766  58899999999999988642    


Q ss_pred             cceEEeeeccccccc-cccCCCCceEecCCCCCcc
Q 014154          346 NEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       346 ~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~~  379 (430)
                      ...+.+++|+|||++ ++++.++.|.+||....+.
T Consensus       279 ~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         279 PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence            233589999999998 7888999999999987543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=1.3e-19  Score=161.80  Aligned_cols=277  Identities=15%  Similarity=0.091  Sum_probs=186.7

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      +++++||++++.+++|.+||+.+++++.+++..       +...+.++.+.+...       ..++++..++.+.+|++.
T Consensus         5 ~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~-------~~~~p~~l~~spDG~-------~l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_           5 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-------DKFGPGTAMMAPDNR-------TAYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECS-------SCCSSCEEEECTTSS-------EEEEEETTTTEEEEEETT
T ss_pred             CCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcC-------CCCCcceEEECCCCC-------EEEEEECCCCcEEEEeCc
Confidence            778999999999999999999999988877631       122344566655433       244667788999999975


Q ss_pred             ecCccccCCCcceEEeeecCC-----CceEEEEEcCCCCEEEEEe------------CCCeEEEEECCCCeeeEeeCCCC
Q 014154          142 VTKVSAESSCSTVKSWNVCAS-----GTIAFSKVDISEKFSLFGG------------KGVEVNVWDLDKCEKIWTAKPPP  204 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~~-----~~i~~~~~~~~~~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~  204 (430)
                      ...        .+..+.....     ..+..++|+|++++++++.            .++.+.+|+..+++....+..+.
T Consensus        71 t~~--------~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  142 (346)
T d1jmxb_          71 TCK--------NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP  142 (346)
T ss_dssp             TTE--------EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE
T ss_pred             cCe--------eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeee
Confidence            432        2223322211     2355789999999998765            46778888887765543322111


Q ss_pred             CCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCE------------
Q 014154          205 KNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFN------------  272 (430)
Q Consensus       205 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~------------  272 (430)
                             .+..+..+.+  ++++.++++   ++.+.+|++.+++ .+..+..+. ....+.++|++..            
T Consensus       143 -------~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  208 (346)
T d1jmxb_         143 -------MPRQVYLMRA--ADDGSLYVA---GPDIYKMDVKTGK-YTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFS  208 (346)
T ss_dssp             -------CCSSCCCEEE--CTTSCEEEE---SSSEEEECTTTCC-EEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred             -------ccCceEEEEe--cCCCEEEEe---CCcceEEEccCCC-EEEEEecCC-CccceEEeccccEEEEEecCCCceE
Confidence                   0123444555  666665554   3568999998765 355555442 2333444454432            


Q ss_pred             --------------EEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeE
Q 014154          273 --------------IYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       273 --------------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                                    ++++..+..+.+||+.++.........+...+..+.+++++.+++.... +.|++||+.+++.+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~  287 (346)
T d1jmxb_         209 MLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKA  287 (346)
T ss_dssp             EEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEE
T ss_pred             eeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEE
Confidence                          2333445568889998887655443323778889999999988887764 5799999999999887


Q ss_pred             EEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCcc
Q 014154          339 VFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       339 ~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~~  379 (430)
                      +..    ...+.+++|+|||++ ++++.|+.|++||....+.
T Consensus       288 ~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~  325 (346)
T d1jmxb_         288 ANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK  325 (346)
T ss_dssp             EEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred             EcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCE
Confidence            532    223689999999999 8888999999999987543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.80  E-value=3.3e-16  Score=141.25  Aligned_cols=274  Identities=9%  Similarity=-0.053  Sum_probs=168.8

Q ss_pred             CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEEecCCCCccccee
Q 014154           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGDLRVAI   91 (430)
Q Consensus        22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~iwd~~~~~~~~~~   91 (430)
                      ..+.|.+||..++     +++.++..+...    .+.+  +|||++|+++.          .++.|.+||..+++++..+
T Consensus        45 ~~~~v~v~D~~tg-----~~~~~~~~~~~~----~~a~--SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~  113 (373)
T d2madh_          45 AIIQQWVLDAGSG-----SILGHVNGGFLP----NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADI  113 (373)
T ss_pred             CCceEEEEECCCC-----CEEEEEeCCCCc----cEEE--cCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEE
Confidence            3457899999887     777777655443    3445  78999998864          4578999999999987776


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeec------CCCce
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTI  165 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~------~~~~i  165 (430)
                      .....        ..  .......        ..++....+..+.++....        ++.+.+|+..      +....
T Consensus       114 ~~~~~--------~~--~~~~~~~--------~~~~~s~dg~~~~v~~~~~--------~~~~~~~~~~~~~~~~~~~~~  167 (373)
T d2madh_         114 ELPDA--------PR--FDVGPYS--------WMNANTPNNADLLFFQFAA--------GPAVGLVVQGGSSDDQLLSSP  167 (373)
T ss_pred             ecCCc--------ce--eEeccCC--------CcEEEEeCCCcEEEEEEcC--------CCceEEeeccCCeEEEEeccc
Confidence            54211        11  0111100        1111122222222332211        1122333221      12345


Q ss_pred             EEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEEC
Q 014154          166 AFSKVDISEKFS-LFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (430)
Q Consensus       166 ~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  244 (430)
                      .++.++|+++.+ ++.+.|+.+.+|+...+..............   .......+.+  .+++ .++..+.++.+.+|+.
T Consensus       168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~-~~~~~~~~~~v~~~~~  241 (373)
T d2madh_         168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA---QNLLTQPAQA--NKSG-RIVWPVYSGKILQADI  241 (373)
T ss_pred             eeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC---ccceeeeEEE--CCCc-eEEEecCCceEEEEEc
Confidence            678899988755 5788899999999988777655443221100   0012233344  5555 4455578889999998


Q ss_pred             CCCCcc-eEEEeec----------CCCeEEEEecCCCCEE----------EEEeCCCcEEEEEccCCeEEeeeeCCCCCC
Q 014154          245 SAQRRP-VMSFDFR----------ETPIKAVAEEPDSFNI----------YIGNGSGDLASVDIRTGKLLGCFIGKCSGS  303 (430)
Q Consensus       245 ~~~~~~-~~~~~~~----------~~~i~~~~~sp~~~~l----------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  303 (430)
                      ...... ...+..+          ......++++|++..+          ++...++.+.+||+.+++.+..+..  ...
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~--~~~  319 (373)
T d2madh_         242 SAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHD  319 (373)
T ss_pred             CCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC--CCC
Confidence            864321 1111111          1223345566665544          3455667899999999999888764  567


Q ss_pred             eEEEEecCCCCe--EEEEeCCCcEEEEECCCCceeeEEE
Q 014154          304 IRSIARHPTLPI--IASCGLDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       304 v~~i~~~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~  340 (430)
                      +..++|+|||+.  +++++.|+.|+|||+.+++.+.++.
T Consensus       320 ~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         320 VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            899999999984  4688899999999999999999853

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=8.7e-17  Score=142.54  Aligned_cols=288  Identities=8%  Similarity=0.020  Sum_probs=176.6

Q ss_pred             eeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEe-ecCCeEEEecCCCCcccceeeccC
Q 014154           17 ALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA-RKNGLTDILNPLNGDLRVAISNAG   95 (430)
Q Consensus        17 l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g-~~dg~i~iwd~~~~~~~~~~~~~~   95 (430)
                      ++++.+|++|+||++...  +..++++.+. |.+.+..++  +  +|||++|+++ ..|+.|++|++........+..+.
T Consensus         7 ~v~~~~~~~I~v~~~~~~--~~l~~~~~~~-~~~~v~~la--~--spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~   79 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHE--GALTLTQVVD-VPGQVQPMV--V--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES   79 (333)
T ss_dssp             EEEEGGGTEEEEEEECTT--SCEEEEEEEE-CSSCCCCEE--E--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCC--CCeEEEEEEc-CCCCEeEEE--E--eCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec
Confidence            578889999999999763  2223444443 556654444  4  7789988654 468999999997665444433321


Q ss_pred             CCCCCCCCCceEEEEEeecCcccccccCceEEEEc-cCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCC
Q 014154           96 DSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCT-TKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISE  174 (430)
Q Consensus        96 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~  174 (430)
                      ..     ...+..+.+.+...        .++++. .++.+.+|.......       ........+...+.++.++|++
T Consensus        80 ~~-----~~~p~~l~~spDg~--------~l~v~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~v~~s~d~  139 (333)
T d1ri6a_          80 AL-----PGSLTHISTDHQGQ--------FVFVGSYNAGNVSVTRLEDGLP-------VGVVDVVEGLDGCHSANISPDN  139 (333)
T ss_dssp             EC-----SSCCSEEEECTTSS--------EEEEEETTTTEEEEEEEETTEE-------EEEEEEECCCTTBCCCEECTTS
T ss_pred             cc-----CCCceEEEEcCCCC--------EEeecccCCCceeeeccccccc-------eecccccCCCccceEEEeeecc
Confidence            11     12233455544433        455544 566788887653321       2222333455678889999999


Q ss_pred             CEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-CCCcEEEEECCCCCcceE
Q 014154          175 KFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-NDHQVRLYDTSAQRRPVM  252 (430)
Q Consensus       175 ~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~  252 (430)
                      +++++++. +..|.+|+................   .........++|  ++++..++... ..+...+|+.........
T Consensus       140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~g~~p~~i~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  214 (333)
T d1ri6a_         140 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT---TVEGAGPRHMVF--HPNEQYAYCVNELNSSVDVWELKDPHGNIE  214 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE---CSTTCCEEEEEE--CTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred             eeeeccccccceeeEEEeccCCcceeeeceeee---eecCCCccEEEE--eccceeEEeeccccCceEEEeeccccccee
Confidence            98887764 457999998764332211110000   001144678889  77887766554 556788888764332221


Q ss_pred             ---EEee------cCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCeEEeeee---CCCCCCeEEEEecCCCCeEEEE
Q 014154          253 ---SFDF------RETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGKLLGCFI---GKCSGSIRSIARHPTLPIIASC  319 (430)
Q Consensus       253 ---~~~~------~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~---~~~~~~v~~i~~~~~~~~l~s~  319 (430)
                         ....      .......+++++++++++... .++.+.+|++........+.   .. ...+..++|+|||++|+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~a~spDGk~l~va  293 (333)
T d1ri6a_         215 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ETQPRGFNVDHSGKYLIAA  293 (333)
T ss_dssp             EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SSSCCCEEECTTSSEEEEE
T ss_pred             eeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC-CCCeeEEEEeCCCCEEEEE
Confidence               1111      123567788999998776654 56789999887554322222   22 4567889999999988777


Q ss_pred             e-CCCcEEEE--ECCCCceee
Q 014154          320 G-LDSYLRFW--DIKTRQLLS  337 (430)
Q Consensus       320 ~-~dg~i~iw--d~~~~~~~~  337 (430)
                      + .++.|++|  |..+|.+..
T Consensus       294 ~~~~~~v~v~~id~~tG~l~~  314 (333)
T d1ri6a_         294 GQKSHHISVYEIVGEQGLLHE  314 (333)
T ss_dssp             CTTTCEEEEEEEETTTTEEEE
T ss_pred             ECCCCeEEEEEEECCCCcEEE
Confidence            5 46889998  556676543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.79  E-value=1.7e-16  Score=142.01  Aligned_cols=273  Identities=14%  Similarity=0.058  Sum_probs=162.3

Q ss_pred             CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEe----------ecCCeEEEecCCCCccccee
Q 014154           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVA----------RKNGLTDILNPLNGDLRVAI   91 (430)
Q Consensus        22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g----------~~dg~i~iwd~~~~~~~~~~   91 (430)
                      .++.|.+||..++     +++.++..+...    .+.+  +|||++|++.          ..++.|++||..+++.+..+
T Consensus        26 ~~~~v~v~D~~tg-----~~~~~~~~g~~~----~~a~--SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~   94 (355)
T d2bbkh_          26 AVTQQFVIDGEAG-----RVIGMIDGGFLP----NPVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADI   94 (355)
T ss_dssp             SSEEEEEEETTTT-----EEEEEEEECSSC----EEEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEE
T ss_pred             CcCeEEEEECCCC-----cEEEEEECCCCC----ceEE--cCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEE
Confidence            4567999999998     777666544333    3445  7889888764          34789999999999988776


Q ss_pred             eccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE--ccCCeeEEEEeeecCccccCCCcceEEeeecCC------C
Q 014154           92 SNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC--TTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS------G  163 (430)
Q Consensus        92 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~------~  163 (430)
                      ............ ....+.+.+..        ..++.+  ..+..+.+|+.....        .+........      .
T Consensus        95 ~~~~~~~~~~~~-~~~~~~~s~dg--------~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~  157 (355)
T d2bbkh_          95 ELPDAPRFLVGT-YPWMTSLTPDG--------KTLLFYQFSPAPAVGVVDLEGKA--------FKRMLDVPDCYHIFPTA  157 (355)
T ss_dssp             EETTCCCCCBSC-CGGGEEECTTS--------SEEEEEECSSSCEEEEEETTTTE--------EEEEEECCSEEEEEEEE
T ss_pred             ecCCcceeecCC-CCceEEEecCC--------CeeEEecCCCCceeeeeecCCCc--------EeeEEecCCcceEeecC
Confidence            652211111111 11112332222        233333  233455555543221        2222221110      1


Q ss_pred             ceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          164 TIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ....+.+++++..++... .++.+.+++......              .+...+....+  .+++..++.++.++.+++|
T Consensus       158 ~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~  221 (355)
T d2bbkh_         158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP--------------EDEFLINHPAY--SQKAGRLVWPTYTGKIHQI  221 (355)
T ss_dssp             TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC--------------TTSCBCSCCEE--ETTTTEEEEEBTTSEEEEE
T ss_pred             CcceEEEcCCCCEEEEEecCCCeEEEEecccccc--------------eecceeeeccc--cCCCCeEEEecCCCeEEEE
Confidence            122334444444443322 222333333322111              01133445566  5677788888999999999


Q ss_pred             ECCCCCcce-EEEeecC----------CCeEEEEecCCCCEEEEEeCC----------CcEEEEEccCCeEEeeeeCCCC
Q 014154          243 DTSAQRRPV-MSFDFRE----------TPIKAVAEEPDSFNIYIGNGS----------GDLASVDIRTGKLLGCFIGKCS  301 (430)
Q Consensus       243 d~~~~~~~~-~~~~~~~----------~~i~~~~~sp~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~  301 (430)
                      ++..+.... .....+.          .....++++|++..++....+          +.|.+||+.+++.+..+..  .
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~--~  299 (355)
T d2bbkh_         222 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--G  299 (355)
T ss_dssp             ECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--E
T ss_pred             ecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC--C
Confidence            998755311 1111111          233458899999888776543          3699999999999888875  3


Q ss_pred             CCeEEEEecCCCC--eEEEEeCCCcEEEEECCCCceeeEEE
Q 014154          302 GSIRSIARHPTLP--IIASCGLDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       302 ~~v~~i~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~  340 (430)
                      ..+.+++|+|||+  ++++++.|+.|+|||+++++.+.++.
T Consensus       300 ~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            5689999999997  45667789999999999999999853

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.1e-15  Score=133.37  Aligned_cols=280  Identities=10%  Similarity=0.022  Sum_probs=178.1

Q ss_pred             eeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceE-EEEccCCeeEEEEeeecCc
Q 014154           67 LLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTL-LTCTTKGKASMRSIEVTKV  145 (430)
Q Consensus        67 ~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~v~~~~~~~~  145 (430)
                      .+++++.|++|++|++.....+..++.+      .+...+..+.+.+...        .| +++..++.+.+|++.....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~------~~~~~v~~la~spDG~--------~L~v~~~~d~~i~~~~i~~~~~   71 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV------DVPGQVQPMVVSPDKR--------YLYVGVRPEFRVLAYRIAPDDG   71 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE------ECSSCCCCEEECTTSS--------EEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE------cCCCCEeEEEEeCCCC--------EEEEEECCCCeEEEEEEeCCCC
Confidence            3567789999999998755433333321      1123455566655433        45 5556689999999864321


Q ss_pred             cccCCCcceEE-eeecCCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee
Q 014154          146 SAESSCSTVKS-WNVCASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS  223 (430)
Q Consensus       146 ~~~~~~~~i~~-~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  223 (430)
                             .... -.......+..++|+|++++|++++. ++.|.+|+..............       +...+.++.+  
T Consensus        72 -------~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~--  135 (333)
T d1ri6a_          72 -------ALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-------GLDGCHSANI--  135 (333)
T ss_dssp             -------CEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-------CCTTBCCCEE--
T ss_pred             -------cEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC-------CCccceEEEe--
Confidence                   2222 22334566788999999999998875 6789999887655443322111       1145777888  


Q ss_pred             cCCCCEEEEEeC-CCcEEEEECCCCCcceEEE-----eecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCe----E
Q 014154          224 IDDHRKFVAGTN-DHQVRLYDTSAQRRPVMSF-----DFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK----L  292 (430)
Q Consensus       224 ~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~-----~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~----~  292 (430)
                      +|+++++++++. +..|.+|+...........     .........++|++++.+++... ..+...+|+.....    .
T Consensus       136 s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  215 (333)
T d1ri6a_         136 SPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC  215 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             eecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee
Confidence            899998887775 4569999987654322211     11334668899999998887665 45667788764322    1


Q ss_pred             EeeeeCC-----CCCCeEEEEecCCCCeEEEE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc--cccC
Q 014154          293 LGCFIGK-----CSGSIRSIARHPTLPIIASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA--NAAA  364 (430)
Q Consensus       293 ~~~~~~~-----~~~~v~~i~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~  364 (430)
                      ...+...     .......+++++++++++.. ..++.+.+|++........+.........+.+++|+|||++  +++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~  295 (333)
T d1ri6a_         216 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQ  295 (333)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECT
T ss_pred             eeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEEC
Confidence            2222110     13456778999999876555 56778999998765443332111112333578999999997  4455


Q ss_pred             CCCceEecCCCC
Q 014154          365 DAPMLEIQNGND  376 (430)
Q Consensus       365 ~d~~i~~~~~~~  376 (430)
                      .++.|.+|+.+.
T Consensus       296 ~~~~v~v~~id~  307 (333)
T d1ri6a_         296 KSHHISVYEIVG  307 (333)
T ss_dssp             TTCEEEEEEEET
T ss_pred             CCCeEEEEEEEC
Confidence            679999997755

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.64  E-value=5.4e-13  Score=119.76  Aligned_cols=290  Identities=9%  Similarity=-0.083  Sum_probs=173.6

Q ss_pred             CCCCCcceeeeeecCCCCCceeEEe-----ecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccc--
Q 014154           47 DPHSSNCVLAASIDDSQNDPLLAVA-----RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREES--  119 (430)
Q Consensus        47 ~~~~~~~~~~~~~~~~p~g~~l~~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--  119 (430)
                      .+..++...++    +|||+.+++.     +..+.|.+||..+++.+..+.....          ..+.+.+....-.  
T Consensus        18 ~~~~p~~~~a~----spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~----------~~~a~SpDG~~l~va   83 (373)
T d2madh_          18 AADGPTNDEAP----GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL----------PNPVAAHSGSEFALA   83 (373)
T ss_pred             cCCCCcccccc----CCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC----------ccEEEcCCCCEEEEE
Confidence            45556444443    6788888764     2446799999999998888765211          1233333221000  


Q ss_pred             cccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCC------CceEEEEEcCCCCEEEEEe--CCCeEEEEEC
Q 014154          120 SSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCAS------GTIAFSKVDISEKFSLFGG--KGVEVNVWDL  191 (430)
Q Consensus       120 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~------~~i~~~~~~~~~~~l~~~~--~d~~i~~~d~  191 (430)
                      .........+..++.+.+|+.....        .+........      .....+.|+++++.++...  .++.+.+|+.
T Consensus        84 ~~~~~~~~~~~~~~~v~v~D~~t~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~  155 (373)
T d2madh_          84 STSFSRIAKGKRTDYVEVFDPVTFL--------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQ  155 (373)
T ss_pred             eecCCcccccccceEEEEEECCCCc--------EEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeec
Confidence            0000122223445677777765332        1212111110      1124567888888766554  3567888888


Q ss_pred             CCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEeCCCcEEEEECCCCCcceEEEeec------CCCeEEE
Q 014154          192 DKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGTNDHQVRLYDTSAQRRPVMSFDFR------ETPIKAV  264 (430)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~i~~~  264 (430)
                      ...+......             ...++.+  +|++. .+++.+.|+.+.+|+...... ......+      ......+
T Consensus       156 ~~~~~~~~~~-------------~~~~~~~--s~~g~~~~v~~~~dg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  219 (373)
T d2madh_         156 GGSSDDQLLS-------------SPTCYHI--HPGAPSTFYLLCAQGGLAKTDHAGGAA-GAGLVGAMLTAAQNLLTQPA  219 (373)
T ss_pred             cCCeEEEEec-------------cceeEEE--ecCCCcEEEEEcCCCeEEEEEcCCcee-eEEEeeeccccCccceeeeE
Confidence            7766554432             2456677  67776 456788999999999987543 3333221      1223445


Q ss_pred             EecCCCCEEEEEeCCCcEEEEEccCCeEEe--eeeCC---------CCCCeEEEEecCCCCeE----------EEEeCCC
Q 014154          265 AEEPDSFNIYIGNGSGDLASVDIRTGKLLG--CFIGK---------CSGSIRSIARHPTLPII----------ASCGLDS  323 (430)
Q Consensus       265 ~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~---------~~~~v~~i~~~~~~~~l----------~s~~~dg  323 (430)
                      .+++++.++ ..+.++.+.+|+........  .+..+         .......+++++++..+          ++...++
T Consensus       220 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  298 (373)
T d2madh_         220 QANKSGRIV-WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             EECCCceEE-EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCC
Confidence            566666444 55578899999988765422  11111         01223445666666544          3455667


Q ss_pred             cEEEEECCCCceeeEEEeeccccceEEeeeccccccc---cccCCCCceEecCCCCCcc
Q 014154          324 YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA---NAAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       324 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~---~~~~~d~~i~~~~~~~~~~  379 (430)
                      .+.+||+.+++.+..+..    ...+..++|+|||+.   ++++.|+.|++||....+.
T Consensus       299 ~v~~~d~~t~~~~~~~~~----~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         299 EVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             eEEEEECCCCcEEEEecC----CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence            899999999999987532    234689999999983   6788999999999977543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=7.4e-14  Score=124.56  Aligned_cols=272  Identities=12%  Similarity=0.033  Sum_probs=167.4

Q ss_pred             CCCCceeEEe-----ecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEE--------
Q 014154           62 SQNDPLLAVA-----RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLT--------  128 (430)
Q Consensus        62 ~p~g~~l~~g-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------  128 (430)
                      +|||+.+++.     ..+..|.+||..+++.+.++...          ....+.+.+...        .++.        
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g----------~~~~~a~SpDg~--------~l~v~~~~~~~~   71 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG----------FLPNPVVADDGS--------FIAHASTVFSRI   71 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC----------SSCEEEECTTSS--------CEEEEEEEEEET
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC----------CCCceEEcCCCC--------EEEEEeCCCccc
Confidence            6788888764     34567999999999988887652          111234333222        3332        


Q ss_pred             --EccCCeeEEEEeeecCccccCCCcceEEeeec------CCCceEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeeeE
Q 014154          129 --CTTKGKASMRSIEVTKVSAESSCSTVKSWNVC------ASGTIAFSKVDISEKFSLFGG--KGVEVNVWDLDKCEKIW  198 (430)
Q Consensus       129 --~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~------~~~~i~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~  198 (430)
                        +..++.+.+|++....        .+......      .......++|+|++++++++.  .+..+.+|+..+++.+.
T Consensus        72 ~~g~~d~~v~v~D~~t~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~  143 (355)
T d2bbkh_          72 ARGERTDYVEVFDPVTLL--------PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR  143 (355)
T ss_dssp             TEEEEEEEEEEECTTTCC--------EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred             cccCCCCEEEEEECCCCC--------EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEee
Confidence              2345677777654322        12221111      112234578999999888764  46789999999998877


Q ss_pred             eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe------ecCCCeEEEEecCCCCE
Q 014154          199 TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD------FRETPIKAVAEEPDSFN  272 (430)
Q Consensus       199 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~i~~~~~sp~~~~  272 (430)
                      .+.....          ..  .+  .......+..+.|+...++....... ...+.      .+...+....+.+++..
T Consensus       144 ~~~~~~~----------~~--~~--~~~~~~~~~~~~dg~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (355)
T d2bbkh_         144 MLDVPDC----------YH--IF--PTAPDTFFMHCRDGSLAKVAFGTEGT-PEITHTEVFHPEDEFLINHPAYSQKAGR  208 (355)
T ss_dssp             EEECCSE----------EE--EE--EEETTEEEEEETTSCEEEEECCSSSC-CEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             EEecCCc----------ce--Ee--ecCCcceEEEcCCCCEEEEEecCCCe-EEEEecccccceecceeeeccccCCCCe
Confidence            7654320          11  11  11122233334444444444333221 11111      12334556677888889


Q ss_pred             EEEEeCCCcEEEEEccCCeEE--eeeeCC---------CCCCeEEEEecCCCCeEEEEeCC----------CcEEEEECC
Q 014154          273 IYIGNGSGDLASVDIRTGKLL--GCFIGK---------CSGSIRSIARHPTLPIIASCGLD----------SYLRFWDIK  331 (430)
Q Consensus       273 l~~~~~d~~i~iwd~~~~~~~--~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~d----------g~i~iwd~~  331 (430)
                      ++.++.++.+++|++..++..  .....+         .......+++++++..++....+          ..|.+||..
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~  288 (355)
T d2bbkh_         209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK  288 (355)
T ss_dssp             EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC
Confidence            999999999999999877542  222221         01233558899999887766543          369999999


Q ss_pred             CCceeeEEEeeccccceEEeeecccccc--c-cccCCCCceEecCCCCCc
Q 014154          332 TRQLLSAVFLKQHLNEVVFDSAFADKEV--A-NAAADAPMLEIQNGNDTQ  378 (430)
Q Consensus       332 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~--~-~~~~~d~~i~~~~~~~~~  378 (430)
                      +++.+..+...    ..+.+++|+|||+  + +++..|+.|++||....+
T Consensus       289 t~~~~~~~~~~----~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         289 TGERLAKFEMG----HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             TCCEEEEEEEE----EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCcEEEEecCC----CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence            99998886432    2368899999997  3 567789999999987653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.55  E-value=1.7e-12  Score=116.40  Aligned_cols=281  Identities=14%  Similarity=-0.044  Sum_probs=163.8

Q ss_pred             eecCCCc--eEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEee----------cCCeEEEecCCCCc
Q 014154           19 TFDSLGL--IKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVAR----------KNGLTDILNPLNGD   86 (430)
Q Consensus        19 t~~~dg~--i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~----------~dg~i~iwd~~~~~   86 (430)
                      +...+|.  |.+||..++     +++.....+...  .+  .+  +|||++|++.+          .|+.|.+||..+++
T Consensus        39 ~~~~~g~~~~~~~d~~~~-----~~~~~~~~~~~~--~~--a~--spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~  107 (368)
T d1mdah_          39 PAYFAGTTENWVSCAGCG-----VTLGHSLGAFLS--LA--VA--GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             CTTTCSSEEEEEEETTTT-----EEEEEEEECTTC--EE--EE--CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             eccCCCcceEEEEeCCCC-----cEEEEEeCCCCC--cc--eE--CCCCCEEEEEcccCccccccccCCeEEEEECCCCc
Confidence            3455555  555588776     666666554433  23  34  77888888754          47889999999999


Q ss_pred             ccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE-ccCCeeEEEEeeecCccccCCCcceEEeeecCCCce
Q 014154           87 LRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTI  165 (430)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i  165 (430)
                      ++..+.......+.....+ ..+.+.+..        ..++.+ ..++.+.+|++....        .+..........+
T Consensus       108 ~~~~i~~p~~~~~~~g~~p-~~~a~SpDG--------k~l~va~~~~~~v~~~d~~~~~--------~~~~~~~~~~~~~  170 (368)
T d1mdah_         108 PIADIELPDAPRFSVGPRV-HIIGNCASS--------ACLLFFLFGSSAAAGLSVPGAS--------DDQLTKSASCFHI  170 (368)
T ss_dssp             EEEEEEETTSCSCCBSCCT-TSEEECTTS--------SCEEEEECSSSCEEEEEETTTE--------EEEEEECSSCCCC
T ss_pred             EeeeecCCccceecccCCc-cceEECCCC--------CEEEEEeCCCCeEEEEECCCCc--------EeEEeeccCcceE
Confidence            8887764322111111111 113343332        244433 456777777765332        2233222211111


Q ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECC
Q 014154          166 AFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTS  245 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  245 (430)
                          +......++..+.||.+.++++..............   ...+...+....+  .+++..+.+  ..+.++++++.
T Consensus       171 ----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~g~~~~~--~~~~v~~~~~~  239 (368)
T d1mdah_         171 ----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC---TGAQNCSSQAAQA--NYPGMLVWA--VASSILQGDIP  239 (368)
T ss_dssp             ----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS---CTTSCBCSCCEEE--TTTTEEEEC--BSSCCEEEECC
T ss_pred             ----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccc---ccccccceeeccc--ccCcEEEEe--cCCCEEEEeec
Confidence                111345666677888888888765443322221110   0001123344555  566655543  45667777766


Q ss_pred             CCCcceEEE--eec----------CCCeEEEEecCCCCEEEEEeCC---------CcEEEEEccCCeEEeeeeCCCCCCe
Q 014154          246 AQRRPVMSF--DFR----------ETPIKAVAEEPDSFNIYIGNGS---------GDLASVDIRTGKLLGCFIGKCSGSI  304 (430)
Q Consensus       246 ~~~~~~~~~--~~~----------~~~i~~~~~sp~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~v  304 (430)
                      .... ....  ..+          ......++++|++..++....+         ..|.+||..+++.+..+..  ...+
T Consensus       240 ~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~  316 (368)
T d1mdah_         240 AAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--GHDS  316 (368)
T ss_dssp             SSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--EEEE
T ss_pred             CCce-EEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC--CCce
Confidence            5332 1111  100          1123457888998877765432         3599999999999888875  4578


Q ss_pred             EEEEecCCCC-e-EEEEeCCCcEEEEECCCCceeeEEEe
Q 014154          305 RSIARHPTLP-I-IASCGLDSYLRFWDIKTRQLLSAVFL  341 (430)
Q Consensus       305 ~~i~~~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~  341 (430)
                      ..++|+|||+ + ++++..|+.|++||..+++.+.++.+
T Consensus       317 ~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             CEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             eEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            9999999996 3 46667889999999999999998654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.44  E-value=1.1e-11  Score=110.89  Aligned_cols=271  Identities=9%  Similarity=0.002  Sum_probs=166.1

Q ss_pred             eEEeecCCeEEEecCCCCcccceeeccCCCCCCCC-------------------CCceEEEEEeecCcccccccCceEEE
Q 014154           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPE-------------------DDGIVGLHLFKRQREESSSRSRTLLT  128 (430)
Q Consensus        68 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~~~~~~~~~~~~  128 (430)
                      +++|+.+|.|+||++.+++.+..+..+++.....-                   ......+...+... +   .+-.++.
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-D---Gr~lfV~   89 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-D---GKYLFIN   89 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-E---EEEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-C---CCEEEEE
Confidence            56688899999999999998888766433221100                   00001111111110 0   0013344


Q ss_pred             EccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCE--EEEEeCCC-----------------eEEEE
Q 014154          129 CTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKF--SLFGGKGV-----------------EVNVW  189 (430)
Q Consensus       129 ~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~--l~~~~~d~-----------------~i~~~  189 (430)
                      ...+..+.++++....        ..++..+.+...+..++|+|+++.  ++..+.+.                 .+..+
T Consensus        90 d~~~~rVavIDl~t~k--------~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~i  161 (441)
T d1qnia2          90 DKANTRVARIRLDIMK--------TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAI  161 (441)
T ss_dssp             ETTTTEEEEEETTTTE--------EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEE
T ss_pred             cCCCCEEEEEECCCCc--------EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEee
Confidence            5566788888765332        455566677888999999998884  44444331                 23457


Q ss_pred             ECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC---------------------------------
Q 014154          190 DLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND---------------------------------  236 (430)
Q Consensus       190 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------------------------------  236 (430)
                      |..+.+..+++...          ..+..+.|  +|+|.++++.+.+                                 
T Consensus       162 D~~t~~v~~qI~v~----------~~p~~v~~--spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dG  229 (441)
T d1qnia2         162 DAETMDVAWQVIVD----------GNLDNTDA--DYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG  229 (441)
T ss_dssp             ETTTCSEEEEEEES----------SCCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTT
T ss_pred             cCccceeeEEEecC----------CCccceEE--CCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCC
Confidence            77776666555432          23566778  7888888777643                                 


Q ss_pred             --------CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEE-EeCCCcEEEEEccCCeEE--------eeeeCC
Q 014154          237 --------HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYI-GNGSGDLASVDIRTGKLL--------GCFIGK  299 (430)
Q Consensus       237 --------g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~-~~~d~~i~iwd~~~~~~~--------~~~~~~  299 (430)
                              +.+.+++... ...+..+..+.. ...+.++|||+++++ +..+++|.+||+.+....        ..+.++
T Consensus       230 k~~~v~~~~v~vvd~~~~-~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~  307 (441)
T d1qnia2         230 NFKTIGDSKVPVVDGRGE-SEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE  307 (441)
T ss_dssp             CCBCCTTCCCCEEECSSS-CSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC
T ss_pred             CEEEeCCCCcEEEEcccC-CceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee
Confidence                    2334444333 234555665543 578999999998765 567899999998753210        111111


Q ss_pred             --CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC----------CceeeEEE---eeccccceEEeeeccccccc-ccc
Q 014154          300 --CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT----------RQLLSAVF---LKQHLNEVVFDSAFADKEVA-NAA  363 (430)
Q Consensus       300 --~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~---~~~~~~~~v~~~~~s~~g~~-~~~  363 (430)
                        ..-.....+|.++|..+.+...|..|..|++..          ...+..+.   ..|| ...+.+.+|+|||++ +++
T Consensus       308 ~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH-~~~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH-NHASLTESRDADGKWLVVL  386 (441)
T ss_dssp             CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEETTTTSTTCCCCEEEEE
T ss_pred             cccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCC-CccccccccCCCCcEEEec
Confidence              012345568999998888889999999999742          12233321   2567 444588899999999 777


Q ss_pred             CC
Q 014154          364 AD  365 (430)
Q Consensus       364 ~~  365 (430)
                      +.
T Consensus       387 ~k  388 (441)
T d1qnia2         387 SK  388 (441)
T ss_dssp             ES
T ss_pred             Cc
Confidence            33

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.41  E-value=1.2e-11  Score=110.84  Aligned_cols=266  Identities=11%  Similarity=0.011  Sum_probs=154.4

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCC-CC--cc----------------------eeee-eecCCCCCcee
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPH-SS--NC----------------------VLAA-SIDDSQNDPLL   68 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~-~~--~~----------------------~~~~-~~~~~p~g~~l   68 (430)
                      ..+++++.+|+|+||++.++     +.++++.-.. .+  ..                      --++ ..+..|||++|
T Consensus        12 y~f~Sgg~sG~V~V~dlpS~-----r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l   86 (441)
T d1qnia2          12 YGFWSGGHQGEVRVLGVPSM-----RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL   86 (441)
T ss_dssp             EEEEECBTTCCEEEEEETTT-----EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred             EEEEeCCCCCcEEEEeCCCC-----cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE
Confidence            45788999999999999886     4444432100 00  00                      0011 23457899999


Q ss_pred             EEe-ecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEE----------
Q 014154           69 AVA-RKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASM----------  137 (430)
Q Consensus        69 ~~g-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v----------  137 (430)
                      ++. ..+++|.++|+.+++....+..       |....+.++.+.+...       -..+++.....+.+          
T Consensus        87 fV~d~~~~rVavIDl~t~k~~~ii~i-------P~g~gphgi~~spdg~-------t~YV~~~~~~~v~~~~dg~~~~~~  152 (441)
T d1qnia2          87 FINDKANTRVARIRLDIMKTDKITHI-------PNVQAIHGLRLQKVPK-------TNYVFCNAEFVIPQPNDGTDFSLD  152 (441)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEEC-------TTCCCEEEEEECCSSB-------CCEEEEEECSCEESSCSSSCCCGG
T ss_pred             EEEcCCCCEEEEEECCCCcEeeEEec-------CCCCCccceEEeccCC-------EEEEEeccCCcccccCcccccccc
Confidence            665 5778999999999887665542       1223455555554322       12233322222211          


Q ss_pred             -----EE-eeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCC---------------------------
Q 014154          138 -----RS-IEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGV---------------------------  184 (430)
Q Consensus       138 -----~~-~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------------------  184 (430)
                           +. +..        ...-..|.+...+....+.++|+++++++.+.+.                           
T Consensus       153 ~~~~~~~~iD~--------~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         153 NSYTMFTAIDA--------ETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             GEEEEEEEEET--------TTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             cccceEEeecC--------ccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence                 11 110        0011223333345677888999999888776542                           


Q ss_pred             --------------eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE-EEeCCCcEEEEECCCCCc
Q 014154          185 --------------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV-AGTNDHQVRLYDTSAQRR  249 (430)
Q Consensus       185 --------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~  249 (430)
                                    .+.+++......+..+..          ......+.+  +|||++++ ++..+++|.+||+.....
T Consensus       225 ~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv----------gksPhGv~v--SPDGkyl~~~~~~~~tvsv~d~~k~~~  292 (441)
T d1qnia2         225 AVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV----------PKNPHGLNT--SPDGKYFIANGKLSPTVSVIAIDKLDD  292 (441)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSSSCSSEEEECC----------BSSCCCEEE--CTTSCEEEEECTTSSBEEEEEGGGHHH
T ss_pred             EecCCCEEEeCCCCcEEEEcccCCceEEEEeC----------CCCccCceE--CCCCCEEEEeCCcCCcEEEEEeehhhh
Confidence                          222222222222222222          234566788  89999765 566799999999864221


Q ss_pred             -------ceEEEee---cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccC----------CeEEeee-----eCCCCCCe
Q 014154          250 -------PVMSFDF---RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRT----------GKLLGCF-----IGKCSGSI  304 (430)
Q Consensus       250 -------~~~~~~~---~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~----------~~~~~~~-----~~~~~~~v  304 (430)
                             +...+.+   ..-.....+|.++|+.+.+...|..|..|++..          ...+..+     .+| ...+
T Consensus       293 ~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH-~~~~  371 (441)
T d1qnia2         293 LFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH-NHAS  371 (441)
T ss_dssp             HTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEE-EEET
T ss_pred             HhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCC-Cccc
Confidence                   0111111   112345568999998888888999999999741          1233344     355 5666


Q ss_pred             EEEEecCCCCeEEEEe
Q 014154          305 RSIARHPTLPIIASCG  320 (430)
Q Consensus       305 ~~i~~~~~~~~l~s~~  320 (430)
                      .+..++|||+||++++
T Consensus       372 ~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         372 LTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTTSTTCCCCEEEEEE
T ss_pred             cccccCCCCcEEEecC
Confidence            7778999999999994

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=2.3e-11  Score=108.85  Aligned_cols=193  Identities=10%  Similarity=-0.030  Sum_probs=125.4

Q ss_pred             EEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEEC
Q 014154          166 AFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  244 (430)
                      ..++|+|++++|+++. .++.+.+||+.+++....+..+...         .   .+  ......++..+.||.+.++++
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~---------~---~~--~~~~~~~v~~~~Dg~~~~~~~  192 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF---------H---IH--PGAAATHYLGSCPASLAASDL  192 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC---------C---CE--EEETTEEECCCCTTSCEEEEC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc---------e---Ec--cCCCceEEEEcCCCCEEEEEe
Confidence            3588999999998776 5789999999999888776553210         0   01  122345666677888888887


Q ss_pred             CCCCcceEE-----EeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEee--eeCC---------CCCCeEEEE
Q 014154          245 SAQRRPVMS-----FDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGC--FIGK---------CSGSIRSIA  308 (430)
Q Consensus       245 ~~~~~~~~~-----~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~---------~~~~v~~i~  308 (430)
                      .........     +..+...+..+.+.+++..+.+.  .+.++++++..+.....  ...+         .......++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a  270 (368)
T d1mdah_         193 AAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA  270 (368)
T ss_dssp             CSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred             cCCceeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEE
Confidence            754432221     11223344567777887655543  45667777665543321  1111         011234578


Q ss_pred             ecCCCCeEEEEeCC---------CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc---cccCCCCceEecCCCC
Q 014154          309 RHPTLPIIASCGLD---------SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA---NAAADAPMLEIQNGND  376 (430)
Q Consensus       309 ~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~---~~~~~d~~i~~~~~~~  376 (430)
                      ++|++..++....+         ..|.+||..+++.+..+..    ...+.+++|+|||+.   ++...++.|++||...
T Consensus       271 ~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~----~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC----CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            89998877665322         3599999999998887542    234688999999972   6677899999999876


Q ss_pred             Cc
Q 014154          377 TQ  378 (430)
Q Consensus       377 ~~  378 (430)
                      ..
T Consensus       347 gk  348 (368)
T d1mdah_         347 DQ  348 (368)
T ss_dssp             CE
T ss_pred             CC
Confidence            43

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.26  E-value=9e-09  Score=91.32  Aligned_cols=163  Identities=10%  Similarity=0.055  Sum_probs=103.3

Q ss_pred             CCCceEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeE---eeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe-C
Q 014154          161 ASGTIAFSKVDISEKFSLFGGK-GVEVNVWDLDKCEKIW---TAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT-N  235 (430)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~  235 (430)
                      ....+.++.|+|++++++++.. ...|.+|+......+.   ......       .......++|  +|+++++++.. .
T Consensus       143 ~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~-------~g~gPr~i~f--~pdg~~~yv~~e~  213 (365)
T d1jofa_         143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-------PGDHPRWVAM--HPTGNYLYALMEA  213 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-------TTCCEEEEEE--CTTSSEEEEEETT
T ss_pred             CCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC-------CCCceEEEEE--CCCCceEEEeccC
Confidence            3456889999999999988764 3478888865432211   111111       1145788999  89999876555 5


Q ss_pred             CCcEEEEECCCCCcc-eEEEee-----------------cCCCeEEEEecCCCCEEEEEeC------CCcEEEEEccCCe
Q 014154          236 DHQVRLYDTSAQRRP-VMSFDF-----------------RETPIKAVAEEPDSFNIYIGNG------SGDLASVDIRTGK  291 (430)
Q Consensus       236 dg~i~iwd~~~~~~~-~~~~~~-----------------~~~~i~~~~~sp~~~~l~~~~~------d~~i~iwd~~~~~  291 (430)
                      +++|.+|++...... +.....                 +......+.++|+|++|+++..      ...|..|++....
T Consensus       214 ~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g  293 (365)
T d1jofa_         214 GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG  293 (365)
T ss_dssp             TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS
T ss_pred             CCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCC
Confidence            788999998764321 111110                 1113457899999999988753      1237777765432


Q ss_pred             EEe---ee---eCCCCCCeEEEEecC-CCCeEEEE-eCCCcEEEEECCCC
Q 014154          292 LLG---CF---IGKCSGSIRSIARHP-TLPIIASC-GLDSYLRFWDIKTR  333 (430)
Q Consensus       292 ~~~---~~---~~~~~~~v~~i~~~~-~~~~l~s~-~~dg~i~iwd~~~~  333 (430)
                      .+.   .+   ... ......++++| +|++|+++ ..++.|.+|++...
T Consensus       294 ~~~~~~~~~~~~~~-G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         294 SIEKQLFLSPTPTS-GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CEEEEEEEEECSSC-CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ceeeEeEeeEEEcC-CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            111   11   111 34567899998 78988776 46789999987644

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=5.8e-08  Score=82.53  Aligned_cols=246  Identities=10%  Similarity=0.095  Sum_probs=154.0

Q ss_pred             eeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEE-ccCC
Q 014154           55 LAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTC-TTKG  133 (430)
Q Consensus        55 ~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~g  133 (430)
                      ..++.  .|+|+++++-..+..|++||. +|+.+..+.......  ........+.+.....       ..+++. ..++
T Consensus        26 ~gvav--d~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~-------~~~~~~~~~~~   93 (279)
T d1q7fa_          26 SGVAV--NAQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRD--SQLLYPNRVAVVRNSG-------DIIVTERSPTH   93 (279)
T ss_dssp             EEEEE--CTTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSST--TCBSSEEEEEEETTTT-------EEEEEECGGGC
T ss_pred             cEEEE--cCCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCc--cccccccccccccccc-------ccceeccCCcc
Confidence            34455  567887777677889999996 577666653311100  0011222233222221       122222 2223


Q ss_pred             eeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCC
Q 014154          134 KASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTP  213 (430)
Q Consensus       134 ~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  213 (430)
                      .+.+++.         ....+..+..........+++.+++.++++....+.+.+++.. ++.+..+....       +.
T Consensus        94 ~i~~~~~---------~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~-------~~  156 (279)
T d1q7fa_          94 QIQIYNQ---------YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSK-------HL  156 (279)
T ss_dssp             EEEEECT---------TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTT-------TC
T ss_pred             ccccccc---------cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccc-------cc
Confidence            3333221         1223444444445667889999999988888888888888864 45555443221       12


Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe--ecCCCeEEEEecCCCCEEEEEeC-CCcEEEEEccCC
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNG-SGDLASVDIRTG  290 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~  290 (430)
                      .....+++  .++++++++....+.|++||... + .+..+.  +.......|++.++|+.+++-.. ++.|.+|+. +|
T Consensus       157 ~~~~~i~~--d~~g~i~v~d~~~~~V~~~d~~G-~-~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G  231 (279)
T d1q7fa_         157 EFPNGVVV--NDKQEIFISDNRAHCVKVFNYEG-Q-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG  231 (279)
T ss_dssp             SSEEEEEE--CSSSEEEEEEGGGTEEEEEETTC-C-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS
T ss_pred             cccceeee--ccceeEEeeeccccceeeeecCC-c-eeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CC
Confidence            55777888  78888888888889999999874 3 345543  23345789999999987776544 456999984 78


Q ss_pred             eEEeeeeCC-CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCce
Q 014154          291 KLLGCFIGK-CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQL  335 (430)
Q Consensus       291 ~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~  335 (430)
                      +.+..+... .......|++.|+|.+++ ++.++.|++|......+
T Consensus       232 ~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         232 QLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred             CEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence            877776532 134678999999997554 56789999999876543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.16  E-value=2.2e-10  Score=105.95  Aligned_cols=146  Identities=7%  Similarity=-0.033  Sum_probs=110.1

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC---------CC
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------DH  237 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------dg  237 (430)
                      .+.|.+++.+++  ..++.+.+||+.+++....+..+...    .+...|.++.|  +||+++|+.++.         ++
T Consensus        21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~~~i~~~~~--SpDg~~i~~~~~~~~~~r~s~~~   92 (470)
T d2bgra1          21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFD----EFGHSINDYSI--SPDGQFILLEYNYVKQWRHSYTA   92 (470)
T ss_dssp             CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTT----TSSSCCCEEEE--CTTSSEEEEEEEEEECSSSCEEE
T ss_pred             CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhh----hccCccceeEE--CCCCCEEEEEECCcceeeeccCc
Confidence            467888887776  35778999999999876655543311    12356889999  999999998753         56


Q ss_pred             cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC-----------------C
Q 014154          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK-----------------C  300 (430)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-----------------~  300 (430)
                      .+.+||+.+++  +..+..+...+..+.|||||++|+.. .++.+++|+..+++.......+                 .
T Consensus        93 ~~~l~d~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~  169 (470)
T d2bgra1          93 SYDIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (470)
T ss_dssp             EEEEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             eEEEEECCCCc--ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeee
Confidence            78999999854  45677788899999999999999986 5778999999988765443322                 1


Q ss_pred             CCCeEEEEecCCCCeEEEEeCCC
Q 014154          301 SGSIRSIARHPTLPIIASCGLDS  323 (430)
Q Consensus       301 ~~~v~~i~~~~~~~~l~s~~~dg  323 (430)
                      .+....+.|||||++|+....|.
T Consensus       170 ~~~~~~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         170 FSAYSALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEEC
T ss_pred             cCCccccEECCCCCccceeEecC
Confidence            22346688999999999886553

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.06  E-value=1.2e-07  Score=87.03  Aligned_cols=295  Identities=8%  Similarity=-0.096  Sum_probs=150.2

Q ss_pred             CCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCC-CC
Q 014154           22 SLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSG-AQ  100 (430)
Q Consensus        22 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~  100 (430)
                      .++.+.|||+.++      .+..+..+...  +....|  +|||++||.. .++.+.+|+..+++............ +.
T Consensus        90 ~~~~~~l~d~~~~------~~~~l~~~~~~--~~~~~~--SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~  158 (470)
T d2bgra1          90 YTASYDIYDLNKR------QLITEERIPNN--TQWVTW--SPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYN  158 (470)
T ss_dssp             EEEEEEEEETTTT------EECCSSCCCTT--EEEEEE--CSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEE
T ss_pred             cCceEEEEECCCC------cccccccCCcc--cccccc--ccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccc
Confidence            3567889999996      34556667666  445556  8899999986 56889999998887554332210000 00


Q ss_pred             C---------CCCceEEEEEeecCcccccccCceEEEEccCC-eeEEEEeeecCc----------------cccCCCcce
Q 014154          101 P---------EDDGIVGLHLFKRQREESSSRSRTLLTCTTKG-KASMRSIEVTKV----------------SAESSCSTV  154 (430)
Q Consensus       101 ~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~----------------~~~~~~~~i  154 (430)
                      +         ..+... ..+|.++.       ..++....+. .+..+.+.....                .....+..+
T Consensus       159 g~~d~~~~~~~~~~~~-~~~wSPDG-------k~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  230 (470)
T d2bgra1         159 GITDWVYEEEVFSAYS-ALWWSPNG-------TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKF  230 (470)
T ss_dssp             SBCCHHHHHHTSSSSB-CEEECTTS-------SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEE
T ss_pred             cccceeeeeeecCCcc-ccEECCCC-------CccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceE
Confidence            0         000111 12344333       3444443332 233333322111                111223345


Q ss_pred             EEeeecCC---------------------CceEEEEEcCCCCEEEEEe-CCC---e--EEEEECCCCeeeEeeCC-----
Q 014154          155 KSWNVCAS---------------------GTIAFSKVDISEKFSLFGG-KGV---E--VNVWDLDKCEKIWTAKP-----  202 (430)
Q Consensus       155 ~~~~~~~~---------------------~~i~~~~~~~~~~~l~~~~-~d~---~--i~~~d~~~~~~~~~~~~-----  202 (430)
                      .+|++...                     ..+..+.|.+++..++... ..+   .  +..+|..++........     
T Consensus       231 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~  310 (470)
T d2bgra1         231 FVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEM  310 (470)
T ss_dssp             EEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEE
T ss_pred             EEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeee
Confidence            55554322                     2245677777776555432 221   2  33344455543322111     


Q ss_pred             CCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEE-EEEeCCC-
Q 014154          203 PPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNI-YIGNGSG-  280 (430)
Q Consensus       203 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l-~~~~~d~-  280 (430)
                      ........   .......+....++.+++.+..+|..+||...........+..+...|..+ ++++++.+ ++++.++ 
T Consensus       311 ~~~~~i~~---~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~  386 (470)
T d2bgra1         311 STTGWVGR---FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKG  386 (470)
T ss_dssp             CSSSCSSS---SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGG
T ss_pred             eccceeec---ccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCC
Confidence            00000000   001112332133444566777888766654432222345555555667776 44445444 4444332 


Q ss_pred             ---c--EEEEEccCCeEEeee----eCCCCCCeEEEEecCCCCeEEE---EeCCCcEEEEECCCCceeeEEE
Q 014154          281 ---D--LASVDIRTGKLLGCF----IGKCSGSIRSIARHPTLPIIAS---CGLDSYLRFWDIKTRQLLSAVF  340 (430)
Q Consensus       281 ---~--i~iwd~~~~~~~~~~----~~~~~~~v~~i~~~~~~~~l~s---~~~dg~i~iwd~~~~~~~~~~~  340 (430)
                         .  |+-.++..+.....+    ..| ...+..++|||||++++.   +...-.+.+|+..+++.+..+.
T Consensus       387 ~p~~~~ly~v~~~g~~~~~~lt~~~~~~-~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         387 MPGGRNLYKIQLSDYTKVTCLSCELNPE-RCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             CTTCBEEEEEETTCTTCEEESSTTTSTT-TBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             CcceEEEEEEECCCCCceeEecccccCC-CCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence               1  443455443333333    345 778999999999998763   3334468999999999998853

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.05  E-value=7.6e-08  Score=81.80  Aligned_cols=155  Identities=15%  Similarity=0.087  Sum_probs=111.1

Q ss_pred             ceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcceEEEe--ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRPVMSFD--FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  292 (430)
                      ....+++  .+++.++++....+.+.+++... + .+..+.  .+......+++.++++.+++....+.|++||. +++.
T Consensus       115 ~p~~~av--d~~G~i~v~~~~~~~~~~~~~~g-~-~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~  189 (279)
T d1q7fa_         115 HPRGVTV--DNKGRIIVVECKVMRVIIFDQNG-N-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQY  189 (279)
T ss_dssp             CEEEEEE--CTTSCEEEEETTTTEEEEECTTS-C-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCE
T ss_pred             ccceecc--ccCCcEEEEeeccceeeEeccCC-c-eeecccccccccccceeeeccceeEEeeeccccceeeeec-CCce
Confidence            3456666  66777777766667777777653 2 344442  24456788999999988888888899999997 5677


Q ss_pred             Eeeee--CCCCCCeEEEEecCCCCeEEEEeC-CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCce
Q 014154          293 LGCFI--GKCSGSIRSIARHPTLPIIASCGL-DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPML  369 (430)
Q Consensus       293 ~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i  369 (430)
                      +.++.  +. ......|++.++|+++++-.. ++.|.+|+ .+|+.+..+..... ......+++.|||.++++..+..|
T Consensus       190 ~~~~g~~g~-~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~-~~~p~~vav~~dG~l~V~~~n~~v  266 (279)
T d1q7fa_         190 LRQIGGEGI-TNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVK-HAQCFDVALMDDGSVVLASKDYRL  266 (279)
T ss_dssp             EEEESCTTT-SCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSC-CSCEEEEEEETTTEEEEEETTTEE
T ss_pred             eeeeccccc-ccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCC-CCCEeEEEEeCCCcEEEEeCCCeE
Confidence            76663  22 446789999999997776544 45799998 46888777543333 223588999999999666678999


Q ss_pred             EecCCCCC
Q 014154          370 EIQNGNDT  377 (430)
Q Consensus       370 ~~~~~~~~  377 (430)
                      ++|.....
T Consensus       267 ~~fr~~~~  274 (279)
T d1q7fa_         267 YIYRYVQL  274 (279)
T ss_dssp             EEEECSCC
T ss_pred             EEEEeeee
Confidence            99988654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.02  E-value=5.8e-08  Score=81.61  Aligned_cols=195  Identities=8%  Similarity=-0.063  Sum_probs=129.9

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      .....++++++++++++....+.+++++-.+...+.....          ...+..+++  .++++++++-..+..+..+
T Consensus        57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~----------~~~p~~iav--d~~g~i~v~d~~~~~~~~~  124 (260)
T d1rwia_          57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG----------LNYPEGLAV--DTQGAVYVADRGNNRVVKL  124 (260)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS----------CCSEEEEEE--CTTCCEEEEEGGGTEEEEE
T ss_pred             cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee----------eeecccccc--cccceeEeecccccccccc
Confidence            3456789999998877766666666665554444332221          145678888  7888888776667778888


Q ss_pred             ECCCCCcceEEEe-ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154          243 DTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       243 d~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                      +......  ..+. .......+++++|+++++++...++.|..+|............. ......|++.++|.++++...
T Consensus       125 ~~~~~~~--~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~-~~~p~gi~~d~~g~l~vsd~~  201 (260)
T d1rwia_         125 AAGSKTQ--TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHN  201 (260)
T ss_dssp             CTTCSSC--EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETT
T ss_pred             cccccee--eeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccc-cCCCccceeeeeeeeeeeecC
Confidence            7765332  2221 12245578999999998888888889999998755443322233 456789999999998888878


Q ss_pred             CCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCC
Q 014154          322 DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGN  375 (430)
Q Consensus       322 dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~  375 (430)
                      .+.|..++..... ...+ ....... ...++++++|.+ ++-..+++|+.++..
T Consensus       202 ~~~i~~~~~~~~~-~~~~-~~~~~~~-P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         202 TNQVVKLLAGSTT-STVL-PFTGLNT-PLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             TTEEEEECTTCSC-CEEC-CCCSCCC-EEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             CCEEEEEeCCCCe-EEEE-ccCCCCC-eEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence            8888888765443 2221 1222222 478999999988 665666777666543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.01  E-value=1.5e-07  Score=80.86  Aligned_cols=200  Identities=9%  Similarity=-0.042  Sum_probs=137.9

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      ...+..++++|+|+++++...+++|+.|+......... ..          ...+.+++|  .++++++++...++.+..
T Consensus        27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~-~~----------~~~~~gla~--~~dG~l~v~~~~~~~~~~   93 (302)
T d2p4oa1          27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHA-TV----------EGKVSGLAF--TSNGDLVATGWNADSIPV   93 (302)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE-EC----------SSEEEEEEE--CTTSCEEEEEECTTSCEE
T ss_pred             CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEE-cC----------CCCcceEEE--cCCCCeEEEecCCceEEE
Confidence            34678899999999999999999999998764333221 11          156889999  899999999888899988


Q ss_pred             EECCCCCcceEEEee--cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC---------CCCCeEEEEec
Q 014154          242 YDTSAQRRPVMSFDF--RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK---------CSGSIRSIARH  310 (430)
Q Consensus       242 wd~~~~~~~~~~~~~--~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---------~~~~v~~i~~~  310 (430)
                      |+..........+..  .......+++.++++++++-+.++.+..+|...+.....+...         .......+.++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~  173 (302)
T d2p4oa1          94 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF  173 (302)
T ss_dssp             EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE
T ss_pred             EEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc
Confidence            887653322333322  3456789999999999888888899999998877643222210         12245666665


Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          311 PTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       311 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .+ .++++.+..+.|+.++............... ......++|.++|.+ ++...++.|..++...
T Consensus       174 ~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         174 GN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             TT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             CC-ceeeecCCCCeEEeccccccccccccccccC-CCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            43 3556667788899888875443322111111 122467999999998 7777788999987765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=4e-07  Score=76.31  Aligned_cols=155  Identities=6%  Similarity=-0.090  Sum_probs=105.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEE
Q 014154          162 SGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRL  241 (430)
Q Consensus       162 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  241 (430)
                      ......++++++++++++-..+..+..++.............         ......+++  .++++++++...++.|..
T Consensus        97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------~~~p~~i~~--~~~g~~~v~~~~~~~i~~  165 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTG---------LNDPDGVAV--DNSGNVYVTDTDNNRVVK  165 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCS---------CCSCCEEEE--CTTCCEEEEEGGGTEEEE
T ss_pred             eeecccccccccceeEeeccccccccccccccceeeeeeecc---------cCCcceeee--cCCCCEeeeccccccccc
Confidence            356788999999988877666777777776553322211111         134567888  788888888888889999


Q ss_pred             EECCCCCcceEEEe-ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEe
Q 014154          242 YDTSAQRRPVMSFD-FRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCG  320 (430)
Q Consensus       242 wd~~~~~~~~~~~~-~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~  320 (430)
                      +|.....  ...+. ........|++.++|+++++....+.|..++...... ..+....-.....|+++++|.++++-.
T Consensus       166 ~d~~~~~--~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~  242 (260)
T d1rwia_         166 LEAESNN--QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADR  242 (260)
T ss_dssp             ECTTTCC--EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEG
T ss_pred             cccccce--eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEEC
Confidence            9987643  22322 3335678999999998888877788898888654432 222221134678999999998777766


Q ss_pred             CCCcEEEEEC
Q 014154          321 LDSYLRFWDI  330 (430)
Q Consensus       321 ~dg~i~iwd~  330 (430)
                      .++.|+.++.
T Consensus       243 ~~~rI~~i~~  252 (260)
T d1rwia_         243 GNDRVVKLTS  252 (260)
T ss_dssp             GGTEEEEECC
T ss_pred             CCCEEEEEeC
Confidence            6676766554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.95  E-value=4.6e-07  Score=78.12  Aligned_cols=199  Identities=12%  Similarity=0.002  Sum_probs=129.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC---------
Q 014154          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN---------  235 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---------  235 (430)
                      ...++|+++++.|+++...+.|..++.+...............     ....+.+++  .++|.+.++-..         
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~-----~~~pndl~~--d~~G~lyvtd~~~~~~~~~~~  145 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRR-----MQGCNDCAF--DYEGNLWITAPAGEVAPADYT  145 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCB-----CBCCCEEEE--CTTSCEEEEECBCBCTTSCCC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccc-----cCCCcEEEE--CCCCCEEEecCccCccccccc
Confidence            5679999999988888887789999987654332211111111     123577888  888988776422         


Q ss_pred             ------CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCC-----EEEEEeCCCcEEEEEccCC-eE-----EeeeeC
Q 014154          236 ------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSF-----NIYIGNGSGDLASVDIRTG-KL-----LGCFIG  298 (430)
Q Consensus       236 ------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~-----~l~~~~~d~~i~iwd~~~~-~~-----~~~~~~  298 (430)
                            .|.|..++... .  ...+...-..-+.++|+|++.     ++++-+..+.|..||+... ..     ...+.+
T Consensus       146 ~~~~~~~G~v~~~~~dg-~--~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~  222 (314)
T d1pjxa_         146 RSMQEKFGSIYCFTTDG-Q--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             BTTSSSCEEEEEECTTS-C--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             ceeccCCceEEEEeecC-c--eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccc
Confidence                  23455555432 2  222222223457899998764     4445567788999987643 22     122222


Q ss_pred             CCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc-c-cccCCCCceEecCCCC
Q 014154          299 KCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV-A-NAAADAPMLEIQNGND  376 (430)
Q Consensus       299 ~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~-~~~~~d~~i~~~~~~~  376 (430)
                      ........+++..+|++.++....+.|.+||...++.+..+..  + .....+++|.||++ + ++.+..+.|..++.+.
T Consensus       223 ~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~--p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--P-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC--S-SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC--C-CCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            2133457899999999888877889999999988887766433  2 23358899999986 4 7777888888877755

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.91  E-value=1.4e-06  Score=76.88  Aligned_cols=160  Identities=12%  Similarity=-0.011  Sum_probs=101.8

Q ss_pred             ceeEEEEeecCCCCEEEEEeC-CCcEEEEECCCCCcce--EEEe--ecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEcc
Q 014154          215 WFTSAAFLSIDDHRKFVAGTN-DHQVRLYDTSAQRRPV--MSFD--FRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIR  288 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~--~~~~--~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~  288 (430)
                      .+.++.|  +|++++++++.. ...|.+|+........  ....  ........++|+|+++++++.. .++.|.+|++.
T Consensus       146 h~h~v~~--sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         146 GIHGMVF--DPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CEEEEEE--CTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEE--CCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            4778999  899998888764 4578888766433211  1111  1245788999999999887666 56889999987


Q ss_pred             CCeEE--ee---eeC-------------CCCCCeEEEEecCCCCeEEEEeC------CCcEEEEECCCCceeeEE-Eeec
Q 014154          289 TGKLL--GC---FIG-------------KCSGSIRSIARHPTLPIIASCGL------DSYLRFWDIKTRQLLSAV-FLKQ  343 (430)
Q Consensus       289 ~~~~~--~~---~~~-------------~~~~~v~~i~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~-~~~~  343 (430)
                      ..+..  ..   +..             ........+.++|+|++|+++..      .+.|..|++.....+... .+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            65422  11   110             00123567899999999887742      223777777543322221 1111


Q ss_pred             --cccceEEeeeccc-cccc--cccCCCCceEecCCCC
Q 014154          344 --HLNEVVFDSAFAD-KEVA--NAAADAPMLEIQNGND  376 (430)
Q Consensus       344 --~~~~~v~~~~~s~-~g~~--~~~~~d~~i~~~~~~~  376 (430)
                        .......+++++| +|++  ++...++.|.+|+.+.
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence              1122346789998 7886  5667889999998754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.81  E-value=8.7e-06  Score=69.54  Aligned_cols=236  Identities=8%  Similarity=-0.043  Sum_probs=144.9

Q ss_pred             eeeecCCCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCee
Q 014154           56 AASIDDSQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKA  135 (430)
Q Consensus        56 ~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  135 (430)
                      .+.+  .|||+++++...+++|..|+.. +... .+..        ......++.+-+. .       ..+++...++.+
T Consensus        32 ~iAv--~pdG~l~vt~~~~~~I~~i~p~-g~~~-~~~~--------~~~~~~gla~~~d-G-------~l~v~~~~~~~~   91 (302)
T d2p4oa1          32 NLAS--APDGTIFVTNHEVGEIVSITPD-GNQQ-IHAT--------VEGKVSGLAFTSN-G-------DLVATGWNADSI   91 (302)
T ss_dssp             EEEE--CTTSCEEEEETTTTEEEEECTT-CCEE-EEEE--------CSSEEEEEEECTT-S-------CEEEEEECTTSC
T ss_pred             CEEE--CCCCCEEEEeCCCCEEEEEeCC-CCEE-EEEc--------CCCCcceEEEcCC-C-------CeEEEecCCceE
Confidence            3445  7889999998889999999864 4322 2211        1134555554332 2       355666666777


Q ss_pred             EEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCC-CCCCCCcCCc
Q 014154          136 SMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPP-KNSLGIFTPT  214 (430)
Q Consensus       136 ~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~  214 (430)
                      .++.......      ....+...........+++.++++++++-+.++.+..++...+.......... ..........
T Consensus        92 ~~~~~~~~~~------~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (302)
T d2p4oa1          92 PVVSLVKSDG------TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  165 (302)
T ss_dssp             EEEEEECTTS------CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             EEEEeccccc------ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccc
Confidence            7766543221      12233344455678899999999998888889999999988765433222211 1111111123


Q ss_pred             ceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc--eEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeE
Q 014154          215 WFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP--VMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKL  292 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  292 (430)
                      ....+.+  . .+.++++.+..+.|..++.......  ...+. .......+++.++|+++++...++.|..|+......
T Consensus       166 ~~ngi~~--~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~  241 (302)
T d2p4oa1         166 AANGLKR--F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTT  241 (302)
T ss_dssp             SEEEEEE--E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEE
T ss_pred             ccccccc--c-CCceeeecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEE
Confidence            4556666  3 3456666778888998888754321  11222 234567899999999888888889999998753322


Q ss_pred             -EeeeeCCCCCCeEEEEe---cCCCCeEEEEeCC
Q 014154          293 -LGCFIGKCSGSIRSIAR---HPTLPIIASCGLD  322 (430)
Q Consensus       293 -~~~~~~~~~~~v~~i~~---~~~~~~l~s~~~d  322 (430)
                       +...... -...++++|   ++|++.|+.++..
T Consensus       242 ~~~~~~~~-~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         242 IIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEECGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             EEEecCCC-CCCceEEEEcCCCCCCCEEEEECCC
Confidence             2223322 346789999   6788877766544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=9.1e-06  Score=67.90  Aligned_cols=133  Identities=11%  Similarity=-0.023  Sum_probs=80.7

Q ss_pred             CceEEEEEcCCCCEEEEE-eCCC--eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCC-c
Q 014154          163 GTIAFSKVDISEKFSLFG-GKGV--EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDH-Q  238 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-~  238 (430)
                      .......+++++..++.. ..++  .|.+.++..+........          ........+  +|++..++..+.++ .
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~--spdg~~~~~~~~~~~~  194 (269)
T d2hqsa1         127 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE----------GSQNQDADV--SSDGKFMVMVSSNGGQ  194 (269)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS----------SSEEEEEEE--CTTSSEEEEEEECSSC
T ss_pred             ccccccccccccccceecccccCCceEeeeecccccceeeecc----------ccccccccc--ccccceeEEEeecCCc
Confidence            334445566666655444 3344  466666665433322211          134556677  88999887766544 3


Q ss_pred             --EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeC---CCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          239 --VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNG---SGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       239 --i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                        +.+.+...+.  . ....+........|||||+.|+..+.   ...|+++++..+... .+... .+.+...+|||-
T Consensus       195 ~~i~~~~~~~~~--~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~-~lt~~-~g~~~~p~WSP~  268 (269)
T d2hqsa1         195 QHIAKQDLATGG--V-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA-RLPAT-DGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEETTTCC--E-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE-ECCCS-SSEEEEEEECCC
T ss_pred             eeeeEeeccccc--c-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EEeCC-CCcEEeEEeCCC
Confidence              4444554432  2 33344566788899999999875553   346889999766654 45554 667888999983

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.1e-05  Score=67.39  Aligned_cols=176  Identities=11%  Similarity=0.037  Sum_probs=104.4

Q ss_pred             cCCCceEEEEEcCCCCEEEEEeC-CCe--EEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCE-EEEEeC
Q 014154          160 CASGTIAFSKVDISEKFSLFGGK-GVE--VNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRK-FVAGTN  235 (430)
Q Consensus       160 ~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~s~~~  235 (430)
                      .+........|+|++..++.... .+.  +..+..............          .......+  ++++.. +++...
T Consensus        80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~  147 (269)
T d2hqsa1          80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR----------SNNTEPTW--FPDSQNLAFTSDQ  147 (269)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCS----------SCEEEEEE--CTTSSEEEEEECT
T ss_pred             eeecccccceecCCCCeeeEeeecCCccceeecccccccceeeeecc----------cccccccc--ccccccceecccc
Confidence            44577788999999998887554 222  233333322222222111          12223334  455554 444445


Q ss_pred             CCc--EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCC---cEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154          236 DHQ--VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSG---DLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (430)
Q Consensus       236 dg~--i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~  310 (430)
                      ++.  |.+.++....  ...+..+........|+|+++.++..+.++   .|.++|...+..  .+..+ ........|+
T Consensus       148 ~g~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~-~~~~~~p~~S  222 (269)
T d2hqsa1         148 AGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSS-TFLDETPSLA  222 (269)
T ss_dssp             TSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCC-SSSCEEEEEC
T ss_pred             cCCceEeeeeccccc--ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeec-CccccceEEC
Confidence            554  5555555533  444555566777889999999888776553   355556555543  22233 4566788999


Q ss_pred             CCCCeEEEEeC---CCcEEEEECCCCceeeEEEeeccccceEEeeeccc
Q 014154          311 PTLPIIASCGL---DSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD  356 (430)
Q Consensus       311 ~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~  356 (430)
                      |||++|+..+.   ...|+++++..+.....   ... ...+...+|||
T Consensus       223 PDG~~i~f~s~~~~~~~l~~~~~dg~~~~~l---t~~-~g~~~~p~WSP  267 (269)
T d2hqsa1         223 PNGTMVIYSSSQGMGSVLNLVSTDGRFKARL---PAT-DGQVKFPAWSP  267 (269)
T ss_dssp             TTSSEEEEEEEETTEEEEEEEETTSCCEEEC---CCS-SSEEEEEEECC
T ss_pred             CCCCEEEEEEcCCCCcEEEEEECCCCCEEEE---eCC-CCcEEeEEeCC
Confidence            99998876553   34689999987665442   222 34457888988

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.75  E-value=5.8e-06  Score=71.01  Aligned_cols=153  Identities=10%  Similarity=0.004  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCEEEEEeC---------------CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-
Q 014154          165 IAFSKVDISEKFSLFGGK---------------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-  228 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~~~---------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-  228 (430)
                      ...++++++|++.++-..               .|.|+.++.+ ++.......          ....+.++|  ++++. 
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~----------~~~pNGi~~--~~d~d~  185 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA----------FQFPNGIAV--RHMNDG  185 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE----------ESSEEEEEE--EECTTS
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCC----------cceeeeeEE--CCCCCc
Confidence            567899999988776422               2334444432 222211111          023467888  44443 


Q ss_pred             ----EEEEEeCCCcEEEEECCCCCcce-----EEEee-cCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeC
Q 014154          229 ----KFVAGTNDHQVRLYDTSAQRRPV-----MSFDF-RETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIG  298 (430)
Q Consensus       229 ----~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~-~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  298 (430)
                          ++++-+..+.|..||+.......     ..+.. +......+++..+|++.++....+.|.+||...++.+..+..
T Consensus       186 ~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~  265 (314)
T d1pjxa_         186 RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC  265 (314)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC
T ss_pred             ceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC
Confidence                44555678889999876533211     11111 122356899999999888888889999999988887777766


Q ss_pred             CCCCCeEEEEecCCCC-eEEEEeCCCcEEEEECC
Q 014154          299 KCSGSIRSIARHPTLP-IIASCGLDSYLRFWDIK  331 (430)
Q Consensus       299 ~~~~~v~~i~~~~~~~-~l~s~~~dg~i~iwd~~  331 (430)
                      . ...+++++|.|+++ ++++.+.+|.|..+++.
T Consensus       266 p-~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         266 P-FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             S-SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             C-CCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            5 56789999999987 45666777888888865

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.70  E-value=2.2e-05  Score=67.52  Aligned_cols=192  Identities=6%  Similarity=-0.067  Sum_probs=119.9

Q ss_pred             EeeecCCCceEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEE
Q 014154          156 SWNVCASGTIAFSKVDISEKFSLFGGK----GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFV  231 (430)
Q Consensus       156 ~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  231 (430)
                      .+..........++++++++++++...    .+.+...+...............       ...+..+++  .++|++.+
T Consensus        75 ~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~nd~~~--d~~G~l~v  145 (319)
T d2dg1a1          75 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST-------AYCIDDMVF--DSKGGFYF  145 (319)
T ss_dssp             EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS-------CCCEEEEEE--CTTSCEEE
T ss_pred             EEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCc-------ccCCcceeE--Eeccceee
Confidence            333344566789999999988776543    23455555554443333222111       134677888  88998776


Q ss_pred             EEeC------CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-eCCCcEEEEEccCC-eEEe-------ee
Q 014154          232 AGTN------DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTG-KLLG-------CF  296 (430)
Q Consensus       232 s~~~------dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~-~~~~-------~~  296 (430)
                      +...      .+.+..++....  .+..+...-...+.++|+|+++.|+.+ +..+.|..||+... ....       ..
T Consensus       146 td~~~~~~~~~g~v~~~~~dg~--~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~  223 (319)
T d2dg1a1         146 TDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYY  223 (319)
T ss_dssp             EECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE
T ss_pred             cccccccccCcceeEEEecccc--eeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeec
Confidence            6432      223555555432  233333333456789999999876555 56789999998632 1111       11


Q ss_pred             eCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccc---cceEEeeeccccccc
Q 014154          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHL---NEVVFDSAFADKEVA  360 (430)
Q Consensus       297 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~~v~~~~~s~~g~~  360 (430)
                      ... ......+++.++|++.++....+.|.+||. .|+.+..+.+++..   ...+++++|.+++..
T Consensus       224 ~~~-~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~  288 (319)
T d2dg1a1         224 FTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQ  288 (319)
T ss_dssp             CCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCE
T ss_pred             cCC-ccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCE
Confidence            111 234678999999998888888999999995 68998887665421   223578899887654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.5e-05  Score=72.33  Aligned_cols=156  Identities=12%  Similarity=0.064  Sum_probs=79.3

Q ss_pred             ceeEEEEeecCCCCEEEEEeC-C---CcEEEEECCCCCcceEEEee-cCCCe----EEEEecCCCCEEEE---EeCCC--
Q 014154          215 WFTSAAFLSIDDHRKFVAGTN-D---HQVRLYDTSAQRRPVMSFDF-RETPI----KAVAEEPDSFNIYI---GNGSG--  280 (430)
Q Consensus       215 ~v~~~~~~~~~~~~~l~s~~~-d---g~i~iwd~~~~~~~~~~~~~-~~~~i----~~~~~sp~~~~l~~---~~~d~--  280 (430)
                      .+..+.|  ++++.+++.... +   ..|.++|..++.. ...+.. ....|    ....|+|+|+.++.   .-.+|  
T Consensus       256 y~~~~~W--~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~-~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~  332 (465)
T d1xfda1         256 YITMVKW--ATSTKVAVTWLNRAQNVSILTLCDATTGVC-TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG  332 (465)
T ss_dssp             EEEEEEE--SSSSEEEEEEEETTSCEEEEEEEETTTCCE-EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred             eeeeeEE--cCCCeEEEEEEccccccceEEEEcCCCCcE-EEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccC
Confidence            3667888  788876655432 2   2588899998764 333322 22222    34578999975432   22232  


Q ss_pred             cEEEEEcc------CCeEEeeeeCCCCCCeEEE-EecCCCCeEE-EEeCCC----cEEEEECCCCceeeEEEeeccccce
Q 014154          281 DLASVDIR------TGKLLGCFIGKCSGSIRSI-ARHPTLPIIA-SCGLDS----YLRFWDIKTRQLLSAVFLKQHLNEV  348 (430)
Q Consensus       281 ~i~iwd~~------~~~~~~~~~~~~~~~v~~i-~~~~~~~~l~-s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~  348 (430)
                      .++.+++.      .++.+..+... .-.|..+ .|++++..|. ++..++    .|+-.++..+.....+.......+.
T Consensus       333 ~ly~~~~~~~~~~~~~~~~~~LT~G-~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~  411 (465)
T d1xfda1         333 KFYHITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCT  411 (465)
T ss_dssp             CEEEEEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCC
T ss_pred             ceEEEEeccccccCCCceeEEeccC-CceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCC
Confidence            34444432      23333344433 4456665 6888877654 444332    2444444433322221111111223


Q ss_pred             EEeeeccccccc-c---ccCCCCceEecCC
Q 014154          349 VFDSAFADKEVA-N---AAADAPMLEIQNG  374 (430)
Q Consensus       349 v~~~~~s~~g~~-~---~~~~d~~i~~~~~  374 (430)
                      ..++.|||++++ +   ++..-..+.+++.
T Consensus       412 ~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~  441 (465)
T d1xfda1         412 YFSASFSHSMDFFLLKCEGPGVPMVTVHNT  441 (465)
T ss_dssp             CCEEEECTTSSEEEEECCSSSSCCEEEEET
T ss_pred             EEEEEECCCCCEEEEEeecCCCCeEEEEEC
Confidence            468899999998 3   2323344555543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.61  E-value=1.7e-05  Score=68.28  Aligned_cols=199  Identities=9%  Similarity=-0.064  Sum_probs=124.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----Cc
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----HQ  238 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~  238 (430)
                      ..+..++|++++++.++-...+.|+.|+.+............         .....+++  .++|+++++...+    +.
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~---------~~p~gla~--~~dG~l~va~~~~~~~~~~  108 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK---------ANPAAIKI--HKDGRLFVCYLGDFKSTGG  108 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS---------SSEEEEEE--CTTSCEEEEECTTSSSCCE
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC---------CCeeEEEE--CCCCCEEEEecCCCcccee
Confidence            345789999999977777788899999987765444332221         44678899  8899887765432    33


Q ss_pred             EEEEECCCCCcceEEEeec---CCCeEEEEecCCCCEEEEEeCC------CcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154          239 VRLYDTSAQRRPVMSFDFR---ETPIKAVAEEPDSFNIYIGNGS------GDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~---~~~i~~~~~sp~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  309 (430)
                      +...+.....  +..+..+   ......+++.++|++.++....      +.+..++...... ..+... -...+.++|
T Consensus       109 i~~~~~~~~~--~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~-~~~pnGia~  184 (319)
T d2dg1a1         109 IFAATENGDN--LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQN-ISVANGIAL  184 (319)
T ss_dssp             EEEECTTSCS--CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEE-ESSEEEEEE
T ss_pred             EEEEcCCCce--eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee-EEEeec-cceeeeeee
Confidence            5555555433  2222222   2356789999999866654321      3355555543333 222222 345688999


Q ss_pred             cCCCCeE-EEEeCCCcEEEEECCC-CceeeEE----EeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          310 HPTLPII-ASCGLDSYLRFWDIKT-RQLLSAV----FLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       310 ~~~~~~l-~s~~~dg~i~iwd~~~-~~~~~~~----~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      +|+++.| ++-+..+.|+.|++.. +......    ..........-.+++.++|.+ ++....+.|.+|+...
T Consensus       185 s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G  258 (319)
T d2dg1a1         185 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG  258 (319)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred             ccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCC
Confidence            9999866 4446778999999863 2222111    011010112367899999998 7777889999999654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.53  E-value=0.00016  Score=67.20  Aligned_cols=186  Identities=13%  Similarity=0.066  Sum_probs=113.2

Q ss_pred             EEEcCCCCEEEEEeC----------------CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCC---
Q 014154          168 SKVDISEKFSLFGGK----------------GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR---  228 (430)
Q Consensus       168 ~~~~~~~~~l~~~~~----------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---  228 (430)
                      .++++...+++.+..                ...+...|+++++.++.++....................  ..++.   
T Consensus       240 ~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~--~~~g~~~~  317 (571)
T d2ad6a1         240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQ--PVNGKMTP  317 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE--EETTEEEE
T ss_pred             cccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeee--eccCcccc
Confidence            456666666665544                346888899999999888764433222211122222222  12343   


Q ss_pred             EEEEEeCCCcEEEEECCCCCcceEEEeec-------------------------------------CCC--eEEEEecCC
Q 014154          229 KFVAGTNDHQVRLYDTSAQRRPVMSFDFR-------------------------------------ETP--IKAVAEEPD  269 (430)
Q Consensus       229 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------------------------~~~--i~~~~~sp~  269 (430)
                      .++.++.+|.+.++|..+++. +...+..                                     .+.  -...+++|+
T Consensus       318 ~v~~~~k~G~l~vlDr~tG~~-i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~  396 (571)
T d2ad6a1         318 LLSHIDRNGILYTLNRENGNL-IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             ceeeccccceEEEEecCCCcE-eeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCC
Confidence            467788899999999888763 2211100                                     000  012566777


Q ss_pred             CCEEEEEeCC-------------------------------------CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          270 SFNIYIGNGS-------------------------------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       270 ~~~l~~~~~d-------------------------------------~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      ..++++...+                                     |.|.-+|+.+++.+.+....  .+..+-...-.
T Consensus       397 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~--~~~~~g~l~Ta  474 (571)
T d2ad6a1         397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTK  474 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET
T ss_pred             CceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCC--CCCCcceeEec
Confidence            7666654332                                     46778888888887776532  11111112224


Q ss_pred             CCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          313 LPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       313 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      +.++++++.||.++.+|.++|+.+.++.+.+....  .-+.|..||+.
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a--~P~ty~~dGkq  520 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG--SPMTYSFKGKQ  520 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEECCCCcee--cceEEEECCEE
Confidence            56788899999999999999999999776654322  34667778875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.49  E-value=0.00023  Score=60.04  Aligned_cols=194  Identities=9%  Similarity=-0.028  Sum_probs=123.7

Q ss_pred             ceEEeeecCCCceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEE
Q 014154          153 TVKSWNVCASGTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVA  232 (430)
Q Consensus       153 ~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s  232 (430)
                      ...+|.+.  ..+.++++.+++.++++ +.+ .|.++|..+++...-.......     ....++.+.+  .|+|++.++
T Consensus        51 ~~~~~~~~--~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~-----~~~~~nd~~v--d~~G~iw~~  119 (295)
T d2ghsa1          51 RKTVHALP--FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDL-----PGNRSNDGRM--HPSGALWIG  119 (295)
T ss_dssp             EEEEEECS--SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTC-----TTEEEEEEEE--CTTSCEEEE
T ss_pred             eEEEEECC--CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCC-----CcccceeeEE--CCCCCEEEE
Confidence            55666543  56788888888876664 554 6899999988754433221111     1145778888  889987766


Q ss_pred             EeC----CCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-eCCCcEEEEEccCC------e--EEeeeeCC
Q 014154          233 GTN----DHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTG------K--LLGCFIGK  299 (430)
Q Consensus       233 ~~~----dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~------~--~~~~~~~~  299 (430)
                      ...    .+.-.+|.+..++ ....... -.....++|+++++.++.. +..+.|..|++...      +  ....+.+.
T Consensus       120 ~~~~~~~~~~g~l~~~~~g~-~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~  197 (295)
T d2ghsa1         120 TMGRKAETGAGSIYHVAKGK-VTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI  197 (295)
T ss_dssp             EEETTCCTTCEEEEEEETTE-EEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS
T ss_pred             eccccccccceeEeeecCCc-EEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcc
Confidence            432    2334566665543 2333332 2456789999999866554 55788988887421      1  12222333


Q ss_pred             CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecc-ccccc--cccC
Q 014154          300 CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFA-DKEVA--NAAA  364 (430)
Q Consensus       300 ~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~--~~~~  364 (430)
                       .+....+++..+|.+.++.-..+.|..||. +|+.+..+.++..   .+++++|- +|.+.  ++.+
T Consensus       198 -~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~---~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         198 -KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGK---QTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             -SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCS---BEEEEEEESTTSCEEEEEEB
T ss_pred             -cccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCC---ceEEEEEeCCCCCEEEEEEC
Confidence             456789999999987777667788999995 6888888765432   36899995 45443  5443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.4e-05  Score=72.56  Aligned_cols=185  Identities=9%  Similarity=-0.015  Sum_probs=111.4

Q ss_pred             ceEEEEEcCCCCEEEEEe---------CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe
Q 014154          164 TIAFSKVDISEKFSLFGG---------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT  234 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~  234 (430)
                      .+....++|++++++...         ..+.+.+||+.++.... +......      ...+....|  +|+|+.||...
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~-l~~~~~~------~~~l~~~~w--SPDG~~iafv~  132 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS-LDPPEVS------NAKLQYAGW--GPKGQQLIFIF  132 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE-CCCTTCC------SCCCSBCCB--CSSTTCEEEEE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee-ccCccCC------ccccceeee--ccCCceEEEEe
Confidence            566788999999988764         35678999998776432 2211110      133455677  89999988865


Q ss_pred             CCCcEEEEECCCCCcceEEEeecCCCe-----------------EEEEecCCCCEEEEEeCC-C----------------
Q 014154          235 NDHQVRLYDTSAQRRPVMSFDFRETPI-----------------KAVAEEPDSFNIYIGNGS-G----------------  280 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i-----------------~~~~~sp~~~~l~~~~~d-~----------------  280 (430)
                       ++.|.+.+...+.....+..+....|                 .++.|||||++|+....| .                
T Consensus       133 -~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p  211 (465)
T d1xfda1         133 -ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYP  211 (465)
T ss_dssp             -TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSC
T ss_pred             -cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccc
Confidence             66788888876543222222222212                 467899999999986422 2                


Q ss_pred             -----------------cEEEEEccCCeEEeeeeC-----CCCCCeEEEEecCCCCeEEEEeC-C---CcEEEEECCCCc
Q 014154          281 -----------------DLASVDIRTGKLLGCFIG-----KCSGSIRSIARHPTLPIIASCGL-D---SYLRFWDIKTRQ  334 (430)
Q Consensus       281 -----------------~i~iwd~~~~~~~~~~~~-----~~~~~v~~i~~~~~~~~l~s~~~-d---g~i~iwd~~~~~  334 (430)
                                       .+.++|+.++........     .....+..+.|+|++++++.... +   ..|.++|..+++
T Consensus       212 ~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         212 TVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             CCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred             eeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCc
Confidence                             244455543332111110     00224678899999986655432 2   258889999998


Q ss_pred             eeeEEEeeccccce----EEeeeccccccc
Q 014154          335 LLSAVFLKQHLNEV----VFDSAFADKEVA  360 (430)
Q Consensus       335 ~~~~~~~~~~~~~~----v~~~~~s~~g~~  360 (430)
                      ....+.  ......    -....|++||+.
T Consensus       292 ~~~~~~--e~~~~wv~~~~~~p~~~~dg~~  319 (465)
T d1xfda1         292 CTKKHE--DESEAWLHRQNEEPVFSKDGRK  319 (465)
T ss_dssp             EEEEEE--EECSSCCCCCCCCCEECTTSCS
T ss_pred             EEEEEE--EcCCceEeccCCceeEccCCCe
Confidence            766532  121221    134678899874

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=98.42  E-value=0.00053  Score=63.44  Aligned_cols=330  Identities=11%  Similarity=0.014  Sum_probs=170.5

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCC-----cceeeeeecCCCCCceeEEeecCCeEEEecCCCCcccc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSS-----NCVLAASIDDSQNDPLLAVARKNGLTDILNPLNGDLRV   89 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~g~~l~~g~~dg~i~iwd~~~~~~~~   89 (430)
                      .+|+.++.++.|.-.|.+++     +++=++......     ..+..........+..++.+..++.|.-.|..+|+.+.
T Consensus        67 g~vyv~t~~~~v~AlDa~tG-----~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w  141 (560)
T d1kv9a2          67 GVIYTSMSWSRVIAVDAASG-----KELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIW  141 (560)
T ss_dssp             TEEEEEEGGGEEEEEETTTC-----CEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CEEEEECCCCeEEEEeCCCC-----CEEEEECCCCCccccccccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEe
Confidence            67888888999988899988     555333211100     00000110001113458888899999999999999887


Q ss_pred             eeeccCCCCC-CCCCCceE--EEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccC---------------CC
Q 014154           90 AISNAGDSGA-QPEDDGIV--GLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAES---------------SC  151 (430)
Q Consensus        90 ~~~~~~~~~~-~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~---------------~~  151 (430)
                      .+........ .....++.  ...+....... ...++.+.+-...---.+|.....+.....               .+
T Consensus       142 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~-~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~  220 (560)
T d1kv9a2         142 SQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE-YGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD  220 (560)
T ss_dssp             EEECSCTTSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred             ccCccCcccceeeeeeeeeecCccccccccee-ccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccc
Confidence            7764221111 01111111  00111100000 000111221111112233443322210000               00


Q ss_pred             cceEEeeecCCCc-eEEEEEcCCCCEEEEEeC-------------------CCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154          152 STVKSWNVCASGT-IAFSKVDISEKFSLFGGK-------------------GVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (430)
Q Consensus       152 ~~i~~~~~~~~~~-i~~~~~~~~~~~l~~~~~-------------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  211 (430)
                      ...   ....+.. -..+++++...+++.+..                   ...|...|+++++..+.++..........
T Consensus       221 ~~~---~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d  297 (560)
T d1kv9a2         221 QYW---KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFT  297 (560)
T ss_dssp             CHH---HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCC
T ss_pred             ccc---cccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccccccccc
Confidence            000   0000111 122456666666654331                   23577889999999887766443333222


Q ss_pred             CCcceeEEEEeecCCC---CEEEEEeCCCcEEEEECCCCCcceEEEee-cC-----------------------------
Q 014154          212 TPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDF-RE-----------------------------  258 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~-----------------------------  258 (430)
                      ......-...  ..++   ..++.+..+|.+.++|..+++. +..... ..                             
T Consensus       298 ~~~~~~l~~~--~~~g~~~~~v~~~~k~G~~~~lDr~tG~~-i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  374 (560)
T d1kv9a2         298 ATQQITLAEL--NIDGKPRKVLMQAPKNGFFYVLDRTNGKL-ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW  374 (560)
T ss_dssp             CCSCEEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES
T ss_pred             ccceeeeeee--ecCCceeeeeeecCccceEEEEecCCCcc-cccccccccccccccChhhccccccccccccccceeee
Confidence            2222222222  1233   3567788999999999988763 322211 00                             


Q ss_pred             ----C--CeEEEEecCCCCEEEEEeC------------------------------------CCcEEEEEccCCeEEeee
Q 014154          259 ----T--PIKAVAEEPDSFNIYIGNG------------------------------------SGDLASVDIRTGKLLGCF  296 (430)
Q Consensus       259 ----~--~i~~~~~sp~~~~l~~~~~------------------------------------d~~i~iwd~~~~~~~~~~  296 (430)
                          +  .-...+++|+..++++...                                    .|.|.-||+.+++.+.++
T Consensus       375 p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~  454 (560)
T d1kv9a2         375 PSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKV  454 (560)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEE
T ss_pred             eccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeec
Confidence                0  0013456777766665432                                    246888999999998777


Q ss_pred             eCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          297 IGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       297 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      ...  .+..+-.+.-.+.+++.|+.||.++.+|.++|+.+.++.+......  .-+.|..+|+.
T Consensus       455 ~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~--~P~ty~~dGkq  514 (560)
T d1kv9a2         455 PYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVA--APMTFELAGRQ  514 (560)
T ss_dssp             EES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTEE
T ss_pred             cCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccc--cCEEEEECCEE
Confidence            642  2222222333566888899999999999999999999776544222  23566678863

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=98.37  E-value=0.00083  Score=62.30  Aligned_cols=169  Identities=11%  Similarity=0.049  Sum_probs=102.6

Q ss_pred             eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC---CEEEEEeCCCcEEEEECCCCCcceEEEeecC---
Q 014154          185 EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE---  258 (430)
Q Consensus       185 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---  258 (430)
                      .|...|+++++..+.++....................  ..++   ..++.++.+|.+.++|..+++. +.......   
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~--~~~g~~~~~v~~~~k~G~l~~lDr~tGe~-~~~~~~~~~~~  360 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADI--KIAGKPRKVILHAPKNGFFFVLDRTNGKF-ISAKNFVPVNW  360 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEE--EETTEEEEEEEECCTTSEEEEEETTTCCE-EEEEESSCCSS
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecce--ecCCCceeeeeeccccceeEEeccccccc-ccccccccccc
Confidence            5777888899888876654333222221122221121  1233   3577788999999999998764 32221100   


Q ss_pred             --------------------------------CCeEEEEecCCCCEEEEEeCC---------------------------
Q 014154          259 --------------------------------TPIKAVAEEPDSFNIYIGNGS---------------------------  279 (430)
Q Consensus       259 --------------------------------~~i~~~~~sp~~~~l~~~~~d---------------------------  279 (430)
                                                      ..-..++++|+..++++...+                           
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  440 (573)
T d1kb0a2         361 ASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGW  440 (573)
T ss_dssp             EEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTC
T ss_pred             ccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccc
Confidence                                            001124567776666653222                           


Q ss_pred             ----------------CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeec
Q 014154          280 ----------------GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQ  343 (430)
Q Consensus       280 ----------------~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  343 (430)
                                      |.|.-||+.+++.+.++...  .+...-..+-.+.+|++|+.||.++.||.++|+.+.++.+.+
T Consensus       441 ~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~--~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~  518 (573)
T d1kb0a2         441 NTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT  518 (573)
T ss_dssp             CCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred             ccccccccCCCCCCCcccEEEeCCCCCceEeeecCC--CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCC
Confidence                            35777899999988777643  222221223367788899999999999999999999977655


Q ss_pred             cccceEEeeeccccccc
Q 014154          344 HLNEVVFDSAFADKEVA  360 (430)
Q Consensus       344 ~~~~~v~~~~~s~~g~~  360 (430)
                      .....  -+.|..+|+.
T Consensus       519 ~~~~~--P~ty~~~GkQ  533 (573)
T d1kb0a2         519 GVVAA--PSTYMVDGRQ  533 (573)
T ss_dssp             CCCSC--CEEEEETTEE
T ss_pred             Ccccc--CEEEEECCEE
Confidence            43222  3556668863

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.31  E-value=0.0014  Score=60.98  Aligned_cols=188  Identities=13%  Similarity=0.113  Sum_probs=112.1

Q ss_pred             EEEEcCCCCEEEEEeCC----------------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCC---
Q 014154          167 FSKVDISEKFSLFGGKG----------------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDH---  227 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---  227 (430)
                      .+++++...+++.+..+                ..|...|+++++..+.++..............+..+.. +..++   
T Consensus       245 ~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~-~~~~G~~~  323 (596)
T d1w6sa_         245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQ-KDKDGKAR  323 (596)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEE-ECTTSCEE
T ss_pred             ccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCCccccceeeeec-cccccccc
Confidence            34667777777665432                35888899999999877654433332221222222222 12333   


Q ss_pred             CEEEEEeCCCcEEEEECCCCCcceEEEeecC-------------C--------------------------CeEEEEecC
Q 014154          228 RKFVAGTNDHQVRLYDTSAQRRPVMSFDFRE-------------T--------------------------PIKAVAEEP  268 (430)
Q Consensus       228 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------------~--------------------------~i~~~~~sp  268 (430)
                      ..++....+|.+.++|-.+++. +...+...             .                          .-...+++|
T Consensus       324 ~~v~~~~k~G~~~vlDr~tG~~-i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp  402 (596)
T d1w6sa_         324 KLLTHPDRNGIVYTLDRTDGAL-VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (596)
T ss_dssp             EEEEEECTTSEEEEEETTTCCE-EEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             cceeccccccceeeecCCCCce-eeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCC
Confidence            3677788999999999988763 32211000             0                          001235566


Q ss_pred             CCCEEEEEeC---------------------------------------CCcEEEEEccCCeEEeeeeCCCCCCeEEEEe
Q 014154          269 DSFNIYIGNG---------------------------------------SGDLASVDIRTGKLLGCFIGKCSGSIRSIAR  309 (430)
Q Consensus       269 ~~~~l~~~~~---------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~  309 (430)
                      +..+++....                                       -|.|.-||+.+++.+......  .++.+-.+
T Consensus       403 ~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~--~~~~gg~l  480 (596)
T d1w6sa_         403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM  480 (596)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred             CCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCC--CCCcccee
Confidence            6555554321                                       146788888888887665432  22222222


Q ss_pred             cCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc
Q 014154          310 HPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA  360 (430)
Q Consensus       310 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  360 (430)
                      +-.+.+++.|+.||.++.+|.++|+.+.++.+.+....  .-+.|..||+.
T Consensus       481 sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a--~P~tY~~dGkQ  529 (596)
T d1w6sa_         481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG--YPMTYTHKGTQ  529 (596)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCccc--CCeEEEECCEE
Confidence            33567888899999999999999999999766544222  23456667763

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.31  E-value=0.00058  Score=63.49  Aligned_cols=77  Identities=13%  Similarity=0.086  Sum_probs=55.8

Q ss_pred             CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceeeEEEeeccccceEEeeecccccc
Q 014154          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEV  359 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  359 (430)
                      |.|.-+|+.+++.+.++..+  .++..-..+..+.++++|+.||.++.+|.++|+.+.++.+.+....  .-+.|..+|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~--~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~--~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVS--PPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS--CCEEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCC--CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccc--cCEEEEECCE
Confidence            56888899999988887753  2333222334667888899999999999999999999776544322  2367778886


Q ss_pred             c
Q 014154          360 A  360 (430)
Q Consensus       360 ~  360 (430)
                      .
T Consensus       542 q  542 (582)
T d1flga_         542 Q  542 (582)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=0.0012  Score=55.40  Aligned_cols=191  Identities=14%  Similarity=-0.015  Sum_probs=122.4

Q ss_pred             EEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEEC
Q 014154          166 AFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDT  244 (430)
Q Consensus       166 ~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~  244 (430)
                      .+..|++..+.|+.. -..+.|..||..+++... +...          ..+.++++  .+++.++++ +.+ .|.++|.
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~~----------~~~~~i~~--~~dg~l~va-~~~-gl~~~d~   85 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HALP----------FMGSALAK--ISDSKQLIA-SDD-GLFLRDT   85 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EECS----------SCEEEEEE--EETTEEEEE-ETT-EEEEEET
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EECC----------CCcEEEEE--ecCCCEEEE-EeC-ccEEeec
Confidence            456677755545444 467889999998876542 2211          44778888  567766654 554 5889999


Q ss_pred             CCCCcceEEEeec-----CCCeEEEEecCCCCEEEEEeCC----CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCe
Q 014154          245 SAQRRPVMSFDFR-----ETPIKAVAEEPDSFNIYIGNGS----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPI  315 (430)
Q Consensus       245 ~~~~~~~~~~~~~-----~~~i~~~~~sp~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~  315 (430)
                      .+++.  ..+...     ...+..+.+.|+|++.++....    +.-.+|.+..++....+..  -...+.++|++++..
T Consensus        86 ~tg~~--~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~--~~~~Ng~~~s~d~~~  161 (295)
T d2ghsa1          86 ATGVL--TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD--ISIPNSICFSPDGTT  161 (295)
T ss_dssp             TTCCE--EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE--ESSEEEEEECTTSCE
T ss_pred             cccee--eEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec--cCCcceeeecCCCce
Confidence            98653  333211     1247788999999876665422    3456777777876555544  345688999999986


Q ss_pred             EE-EEeCCCcEEEEECCCC------ceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          316 IA-SCGLDSYLRFWDIKTR------QLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       316 l~-s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      |+ +-+..+.|+.|++...      +....+...+. ......+++..+|.+ ++.-..+.|..|+.+.
T Consensus       162 l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~-~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G  229 (295)
T d2ghsa1         162 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI-KGGMDGSVCDAEGHIWNARWGEGAVDRYDTDG  229 (295)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS-SSEEEEEEECTTSCEEEEEETTTEEEEECTTC
T ss_pred             EEEeecccceeeEeeecccccccccceEEEeccCcc-cccccceEEcCCCCEEeeeeCCCceEEecCCC
Confidence            54 5556788999987531      11111112222 334578899999998 6655677899998654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.18  E-value=0.00019  Score=59.72  Aligned_cols=94  Identities=13%  Similarity=0.069  Sum_probs=62.4

Q ss_pred             EEcCC--CCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeC-C-----CcEE
Q 014154          169 KVDIS--EKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTN-D-----HQVR  240 (430)
Q Consensus       169 ~~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-d-----g~i~  240 (430)
                      .++|+  |+.++..+ ++.|+++|+..++... +....         ..+...+|  +|||+.|+.... +     ..|.
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~---------~~~~~p~~--SPDG~~iaf~~~~~~~~~~~~i~   71 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNL---------GVINNARF--FPDGRKIAIRVMRGSSLNTADLY   71 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSS---------SEEEEEEE--CTTSSEEEEEEEESTTCCEEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-EecCC---------CcccCEEE--CCCCCEEEEEEeeCCCCCceEEE
Confidence            35677  88888765 4579999998877653 32221         55778889  999998886542 2     2477


Q ss_pred             EEECCCCCcceEEEeec-------CCCeEEEEecCCCCEEEEEe
Q 014154          241 LYDTSAQRRPVMSFDFR-------ETPIKAVAEEPDSFNIYIGN  277 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~-------~~~i~~~~~sp~~~~l~~~~  277 (430)
                      +++..++..  ..+..+       ........|+|+++.|+...
T Consensus        72 ~~~~~~g~~--~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          72 FYNGENGEI--KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             EEETTTTEE--EECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             EEEecCCce--EEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            778776542  233221       12456788999999888653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.07  E-value=0.0026  Score=54.92  Aligned_cols=242  Identities=12%  Similarity=0.041  Sum_probs=139.3

Q ss_pred             eEEeecCCeEEEecCCCCcccceeeccCCCCCCCCC-----------------CceEE-----EEEeecCcc--cc---c
Q 014154           68 LAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPED-----------------DGIVG-----LHLFKRQRE--ES---S  120 (430)
Q Consensus        68 l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------~~i~~-----~~~~~~~~~--~~---~  120 (430)
                      +.+|+..|.|+|+-+.+++.+..+..+++....+-.                 ..+..     +..|-...+  -|   +
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            566889999999999999998888875554433100                 01100     000111000  00   1


Q ss_pred             ccCceEE--EEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEc--CCCCEEEEEeCCC------------
Q 014154          121 SRSRTLL--TCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVD--ISEKFSLFGGKGV------------  184 (430)
Q Consensus       121 ~~~~~~~--~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~------------  184 (430)
                      ..+++.+  .--.+..+.+.++....        +.++-.+.....+..+...  |+..+++..+.+.            
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fk--------t~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMK--------CDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTE--------EEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             ccceeEEEEEcCCCceEEEEECccee--------eeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            1123332  22334455555543222        4445555566677777664  4566777666532            


Q ss_pred             ------eEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC----------------------
Q 014154          185 ------EVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND----------------------  236 (430)
Q Consensus       185 ------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----------------------  236 (430)
                            .+.++|.++.+..+.....          .....+.+  +++|+++++.+.+                      
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V~----------g~ld~~~~--s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n  235 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLVS----------GNLDNCDA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFN  235 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEES----------SCCCCEEE--CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEE
T ss_pred             hhhcceEEEEEecCCceEEEEeeeC----------CChhcccc--CCCCCEEEEEeccccCCcchhhcccccceEEEEec
Confidence                  3678899888887766543          22455677  8899988887643                      


Q ss_pred             ----------------CcEEEEECCC--CCcceEEEeecCCCeEEEEecCCCCEEEEEe-CCCcEEEEEccCCe------
Q 014154          237 ----------------HQVRLYDTSA--QRRPVMSFDFRETPIKAVAEEPDSFNIYIGN-GSGDLASVDIRTGK------  291 (430)
Q Consensus       237 ----------------g~i~iwd~~~--~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~------  291 (430)
                                      +.+.+.|.+.  +...+..+.... ....+.++|||+++++++ .+.++.++|++.-.      
T Consensus       236 ~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpK-sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~  314 (459)
T d1fwxa2         236 IAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYEN  314 (459)
T ss_dssp             HHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSC
T ss_pred             hHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCC-CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhccc
Confidence                            1233444432  111222333332 346789999999998766 57899999996321      


Q ss_pred             ------EEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCC
Q 014154          292 ------LLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKT  332 (430)
Q Consensus       292 ------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~  332 (430)
                            ...+...  .-.....+|...|.-..|---|..|.-|++..
T Consensus       315 ~~~~~~~~~e~el--glgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         315 ADPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             C-GGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCccccEEeeccc--CcCccccccCCCceEEEEeeccceEEEEecch
Confidence                  1122221  23456678988886555556899999999853

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=0.004  Score=50.89  Aligned_cols=185  Identities=11%  Similarity=0.108  Sum_probs=118.8

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCC
Q 014154          167 FSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSA  246 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  246 (430)
                      +.-++|..+.|+.-+ ..++.+||+++.+.+......          ..|.-=.|.   +.+.|+..+ +..|+-|++..
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~----------e~VvfWkWi---s~~~L~lVT-~taVYHW~~~g  131 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT----------DDVTFWKWI---SLNTVALVT-DNAVYHWSMEG  131 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS----------SCCCEEEES---SSSEEEEEC-SSEEEEEESSS
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC----------CCcEEEEec---CCCEEEEEc-CCceEEEcccC
Confidence            455689999888776 458999999999988876654          335445664   344555544 55899999976


Q ss_pred             CCcceEEEeecC----CCeEEEEecCCCCEEEEEe---C----CCcEEEEEccCCeEEeeeeCC----------------
Q 014154          247 QRRPVMSFDFRE----TPIKAVAEEPDSFNIYIGN---G----SGDLASVDIRTGKLLGCFIGK----------------  299 (430)
Q Consensus       247 ~~~~~~~~~~~~----~~i~~~~~sp~~~~l~~~~---~----d~~i~iwd~~~~~~~~~~~~~----------------  299 (430)
                      ...|...+..|.    ..|..-..+++.++++..+   .    .|.+.+|..+... .+.+.+|                
T Consensus       132 ~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~  210 (327)
T d1utca2         132 ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEES  210 (327)
T ss_dssp             SCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCE
T ss_pred             CCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCc
Confidence            667888888764    3566667788888887543   2    2667888875431 1122222                


Q ss_pred             -------------------------------------------CCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCcee
Q 014154          300 -------------------------------------------CSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLL  336 (430)
Q Consensus       300 -------------------------------------------~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  336 (430)
                                                                 ...-..++..|+....+..-+.-|.|++||+.++.++
T Consensus       211 ~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i  290 (327)
T d1utca2         211 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI  290 (327)
T ss_dssp             EEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred             eEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEE
Confidence                                                       0112334445555557777788999999999999999


Q ss_pred             eEEEeeccccceEEeee-ccccccccccCCCCceE
Q 014154          337 SAVFLKQHLNEVVFDSA-FADKEVANAAADAPMLE  370 (430)
Q Consensus       337 ~~~~~~~~~~~~v~~~~-~s~~g~~~~~~~d~~i~  370 (430)
                      ..-++.   ...|+..+ ....+-+++....|.|.
T Consensus       291 ~~nRIs---~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         291 YMNRIS---GETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEECC---SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEeecC---CCceEEeccCCCCceEEEECCCCeEE
Confidence            874332   22344333 33334445556666654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.87  E-value=0.0044  Score=50.59  Aligned_cols=227  Identities=13%  Similarity=0.103  Sum_probs=133.7

Q ss_pred             CCCCceeEEeecCCeEEEecCCCCcccceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEee
Q 014154           62 SQNDPLLAVARKNGLTDILNPLNGDLRVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIE  141 (430)
Q Consensus        62 ~p~g~~l~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~  141 (430)
                      +|..+.||.-+ ..+++|+|+++.+.+..+...         ..+   .+|..-.       ...+.--.+..+.-|++.
T Consensus        71 hP~~~IiALra-g~~LQiFnletK~klks~~~~---------e~V---vfWkWis-------~~~L~lVT~taVYHW~~~  130 (327)
T d1utca2          71 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT---------DDV---TFWKWIS-------LNTVALVTDNAVYHWSME  130 (327)
T ss_dssp             CSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS---------SCC---CEEEESS-------SSEEEEECSSEEEEEESS
T ss_pred             CCCCcEEEEec-CCeEEEEehhHhhhhceEEcC---------CCc---EEEEecC-------CCEEEEEcCCceEEEccc
Confidence            56777777754 468999999988877776542         233   3444322       244444556678899874


Q ss_pred             ecCccccCCCcceEEeeecC---CCceEEEEEcCCCCEEEEEe-------CCCeEEEEECCCCeeeEeeCCCCCCCCCCc
Q 014154          142 VTKVSAESSCSTVKSWNVCA---SGTIAFSKVDISEKFSLFGG-------KGVEVNVWDLDKCEKIWTAKPPPKNSLGIF  211 (430)
Q Consensus       142 ~~~~~~~~~~~~i~~~~~~~---~~~i~~~~~~~~~~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~  211 (430)
                      ..       ..++++++...   +..|..-..+++.++++..+       -.|.+.+|..+... ...+.+|...     
T Consensus       131 g~-------s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~-----  197 (327)
T d1utca2         131 GE-------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAAS-----  197 (327)
T ss_dssp             SS-------CCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEE-----
T ss_pred             CC-------CCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccccceeee-----
Confidence            22       23788888543   25677778888888877543       23678899987643 2334444211     


Q ss_pred             CCcceeEEEEeecCCC-CEEEEE---eCCCcEEEEECCCCC---cc--eEE--Eee-c---CCCeEEEEecCCCCEEEEE
Q 014154          212 TPTWFTSAAFLSIDDH-RKFVAG---TNDHQVRLYDTSAQR---RP--VMS--FDF-R---ETPIKAVAEEPDSFNIYIG  276 (430)
Q Consensus       212 ~~~~v~~~~~~~~~~~-~~l~s~---~~dg~i~iwd~~~~~---~~--~~~--~~~-~---~~~i~~~~~sp~~~~l~~~  276 (430)
                          ...+.+.-.+.. .+++.+   ...+.+++-++....   .+  ...  +.. .   ..---++..|+.-..++.-
T Consensus       198 ----F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         198 ----FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             ----EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             ----eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence                111111000001 122221   233688888886532   11  111  111 1   2334577888888899999


Q ss_pred             eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEE
Q 014154          277 NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLR  326 (430)
Q Consensus       277 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~  326 (430)
                      +.-|.|++||+.++.+++.-+-. ...|...+-+.+..-++....+|.|.
T Consensus       274 TK~G~i~lyDleTgt~i~~nRIs-~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         274 TKYGYIHLYDLETGTCIYMNRIS-GETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ecCcEEEEEEcccccEEEEeecC-CCceEEeccCCCCceEEEECCCCeEE
Confidence            99999999999999998776654 45665444444444444555666554

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.67  E-value=0.0054  Score=52.90  Aligned_cols=145  Identities=12%  Similarity=0.090  Sum_probs=95.8

Q ss_pred             CCCEEEEEe-CCCcEEEEECCCCCcceEEEee-cCCCeEEEEec--CCCCEEEEEeCCC------------------cEE
Q 014154          226 DHRKFVAGT-NDHQVRLYDTSAQRRPVMSFDF-RETPIKAVAEE--PDSFNIYIGNGSG------------------DLA  283 (430)
Q Consensus       226 ~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~i~~~~~s--p~~~~l~~~~~d~------------------~i~  283 (430)
                      ||++|++.. .+.+|.+.|+.+.+. ...+.. ....+..+...  |+-.|++..+...                  .+.
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt-~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceee-eEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            677777655 678999999998653 343333 23456666654  4556777776532                  367


Q ss_pred             EEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCC--------------------------------------cE
Q 014154          284 SVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDS--------------------------------------YL  325 (430)
Q Consensus       284 iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--------------------------------------~i  325 (430)
                      ++|..+.+...++..  ......+.++|+|+++++.+.+.                                      .+
T Consensus       177 ~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            889999988777765  34567899999999998887531                                      13


Q ss_pred             EEEECCCC---ceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154          326 RFWDIKTR---QLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       326 ~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~  377 (430)
                      .+-|.+..   ..+..+  .-. .. ...+..+|||++  +++.-+..+.|+|....
T Consensus       255 ~VVD~~~~~~~~v~~yI--PVp-Ks-PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki  307 (459)
T d1fwxa2         255 KVVDGRKEASSLFTRYI--PIA-NN-PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  307 (459)
T ss_dssp             EEEECSGG--CSSEEEE--EEE-SS-CCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             eeecccccCCcceeEEE--ecC-CC-CCceEECCCCCEEEEeCCcCCcEEEEEehhh
Confidence            34443321   111111  111 11 357899999999  66778999999998654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.64  E-value=0.003  Score=52.05  Aligned_cols=54  Identities=11%  Similarity=0.007  Sum_probs=35.7

Q ss_pred             CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCCCcEEEEECCCCceee
Q 014154          280 GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLDSYLRFWDIKTRQLLS  337 (430)
Q Consensus       280 ~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  337 (430)
                      ..|.++|+.++... .+..+....  ...|+|||+.|+.. .++.|+++|+.+++...
T Consensus       214 ~~l~~~d~~g~~~~-~lt~~~~~~--~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         214 GQIYSTDLDGKDLR-KHTSFTDYY--PRHLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             CEEEEEETTSCSCE-ECCCCCSSC--EEEEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             cceEEEeCCCCceE-EeecCCCcc--cccCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            35777788666543 333221223  34689999987764 46889999998887654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.62  E-value=0.0095  Score=54.72  Aligned_cols=82  Identities=11%  Similarity=0.108  Sum_probs=50.2

Q ss_pred             CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC-e
Q 014154          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-I  315 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~  315 (430)
                      |.|.-||+.+++. +-..... .+..+-.++-.+.++++|+.||.++.||.++|+.+.++.......-.-+.+..+|+ |
T Consensus       438 G~l~A~D~~tGk~-~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKA-AWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEE-EEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeE-eeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            4677788888664 3333322 22222122334668889999999999999999999988753111111244555774 5


Q ss_pred             EEEEe
Q 014154          316 IASCG  320 (430)
Q Consensus       316 l~s~~  320 (430)
                      |+..+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.59  E-value=0.01  Score=54.66  Aligned_cols=79  Identities=14%  Similarity=0.114  Sum_probs=47.6

Q ss_pred             cEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEE--EEecCCCC-
Q 014154          238 QVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRS--IARHPTLP-  314 (430)
Q Consensus       238 ~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~--i~~~~~~~-  314 (430)
                      .|.-||+.+++. +-..... .+...=..+-.+.++++|+.|+.++.||.++|+.+.++...  ..+..  +.|..+|+ 
T Consensus       458 ~l~AiD~~tGk~-~W~~~~~-~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~--~~~~~~P~ty~~~GkQ  533 (573)
T d1kb0a2         458 RLLAWDPVAQKA-AWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG--TGVVAAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEETTTTEE-EEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS--SCCCSCCEEEEETTEE
T ss_pred             cEEEeCCCCCce-EeeecCC-CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC--CCccccCEEEEECCEE
Confidence            466677777553 3333322 12111112335778999999999999999999999888753  11111  44555775 


Q ss_pred             eEEEEe
Q 014154          315 IIASCG  320 (430)
Q Consensus       315 ~l~s~~  320 (430)
                      ||+..+
T Consensus       534 Yv~v~~  539 (573)
T d1kb0a2         534 YVSVAV  539 (573)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            444443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.55  E-value=0.011  Score=54.29  Aligned_cols=82  Identities=16%  Similarity=0.029  Sum_probs=48.2

Q ss_pred             CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC-e
Q 014154          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-I  315 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~  315 (430)
                      |.|.-+|+.+++. +-..... .+..+=.++..+.++++|+.|+.++.+|.++|+.+.++.......-.-+.|..+|+ |
T Consensus       444 G~l~AiD~~TG~~-~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKA-KWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCE-EEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeccCCCce-eeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            4577777777664 3222221 11111112224568889999999999999999999888753111112245555774 5


Q ss_pred             EEEEe
Q 014154          316 IASCG  320 (430)
Q Consensus       316 l~s~~  320 (430)
                      |++..
T Consensus       522 i~v~~  526 (571)
T d2ad6a1         522 IGSMY  526 (571)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            54443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.18  E-value=0.086  Score=48.45  Aligned_cols=53  Identities=8%  Similarity=0.021  Sum_probs=35.9

Q ss_pred             CcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCCCcc
Q 014154          323 SYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGNDTQE  379 (430)
Q Consensus       323 g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~~~~  379 (430)
                      |.|.-||+.+++.+........    ..+-..+..|.+ +.++.||.++.||....+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~----~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFA----VWGGTMATAGDLVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC----CCSBCEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred             ceEEEEeCCCCceecccCCCCC----CccceeEecCCEEEEECCCCeEEEEECCCCcE
Confidence            5688889999998877543322    122233334555 6688999999999987654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.75  E-value=0.14  Score=43.92  Aligned_cols=197  Identities=9%  Similarity=-0.063  Sum_probs=91.2

Q ss_pred             eEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeEeeCCCCCCCCCCcCCc----ceeEEEEeecCCCCEEEEEe
Q 014154          165 IAFSKVDISEKFSLFGGKG------VEVNVWDLDKCEKIWTAKPPPKNSLGIFTPT----WFTSAAFLSIDDHRKFVAGT  234 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~s~~  234 (430)
                      -...+..+++++++.|+.+      ..+.+||..+.+-...-...........+..    .-....|. .+++..++.+.
T Consensus       122 ~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~~~~g~  200 (387)
T d1k3ia3         122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG-WKKGSVFQAGP  200 (387)
T ss_dssp             SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEE-CGGGCEEECCS
T ss_pred             ccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEE-eCCCCEEEecC
Confidence            3456777789999888753      3589999987643221111100000000000    00111221 45677777777


Q ss_pred             CCCcEEEEECCCCCcceEE--Eee----cCC--CeEEEEe-cCCCCEEEEEeCCC--------cEEEEEccC---CeE-E
Q 014154          235 NDHQVRLYDTSAQRRPVMS--FDF----RET--PIKAVAE-EPDSFNIYIGNGSG--------DLASVDIRT---GKL-L  293 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~~~~~--~~~----~~~--~i~~~~~-sp~~~~l~~~~~d~--------~i~iwd~~~---~~~-~  293 (430)
                      ..+.+.+++..+..- ...  ...    +..  .-.++.+ ..+++.++.|+...        ...+.++..   ... .
T Consensus       201 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (387)
T d1k3ia3         201 STAMNWYYTSGSGDV-KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTV  279 (387)
T ss_dssp             SSEEEEEECSTTCEE-EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEE
T ss_pred             cCCcEEecCcccCcE-eeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCce
Confidence            777788888776431 111  011    111  1122222 23566667665321        233333322   111 1


Q ss_pred             eeeeC-CCCCCeEEEEecCCCCeEEEEeCCC-----------cEEEEECCCCceeeEEEeeccccceEEeeeccccccc-
Q 014154          294 GCFIG-KCSGSIRSIARHPTLPIIASCGLDS-----------YLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-  360 (430)
Q Consensus       294 ~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-  360 (430)
                      ..... .....-.+....+++++++.|+.+.           .+.+||..+.+-...-.+... ...-......+||++ 
T Consensus       280 ~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~-R~~Hs~a~l~~dG~v~  358 (387)
T d1k3ia3         280 FASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV-RVYHSISLLLPDGRVF  358 (387)
T ss_dssp             ECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC-CCTTEEEEECTTSCEE
T ss_pred             eeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCc-ccceEEEEECCCCEEE
Confidence            11111 0011223455668999999988431           478899876643221001100 000012234678887 


Q ss_pred             cccC
Q 014154          361 NAAA  364 (430)
Q Consensus       361 ~~~~  364 (430)
                      +.|+
T Consensus       359 v~GG  362 (387)
T d1k3ia3         359 NGGG  362 (387)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            6665

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.58  E-value=0.12  Score=43.59  Aligned_cols=191  Identities=8%  Similarity=0.107  Sum_probs=109.0

Q ss_pred             CCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEee----cCCCCEEEEEe-C-C--CcEEEEE
Q 014154          172 ISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLS----IDDHRKFVAGT-N-D--HQVRLYD  243 (430)
Q Consensus       172 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~-~-d--g~i~iwd  243 (430)
                      |+..+++.....+-|++||+. |+.+..+..           ..++.+....    ......|+.++ . +  .+|.+|.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~-----------Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT-----------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCS-----------SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEeccc-----------CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence            345666666667679999995 777766654           3344444321    12222344444 2 2  3577887


Q ss_pred             CCCCCcceEEEeec-------CCCeEEEEe--cCC-CC-EEEEEeCCCcEEEEEcc---CC----eEEeeeeCCCCCCeE
Q 014154          244 TSAQRRPVMSFDFR-------ETPIKAVAE--EPD-SF-NIYIGNGSGDLASVDIR---TG----KLLGCFIGKCSGSIR  305 (430)
Q Consensus       244 ~~~~~~~~~~~~~~-------~~~i~~~~~--sp~-~~-~l~~~~~d~~i~iwd~~---~~----~~~~~~~~~~~~~v~  305 (430)
                      +......+..+...       ...+..+++  +|. +. ++++...+|.+..|.+.   .+    +.++.+..  ...+.
T Consensus       106 id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~--~~q~E  183 (353)
T d1h6la_         106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM--NSQTE  183 (353)
T ss_dssp             EETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC--SSCEE
T ss_pred             ecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC--CCccc
Confidence            75423223333221       124666666  664 43 56667778999888763   23    34556665  46789


Q ss_pred             EEEecCCCCeEEEEeCCCcEEEEECCC-----CceeeEEEeeccccceEEeee--cccccc-c--cccCCCCceEecCCC
Q 014154          306 SIARHPTLPIIASCGLDSYLRFWDIKT-----RQLLSAVFLKQHLNEVVFDSA--FADKEV-A--NAAADAPMLEIQNGN  375 (430)
Q Consensus       306 ~i~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~v~~~~--~s~~g~-~--~~~~~d~~i~~~~~~  375 (430)
                      .+.+.+....|+.+-++.-|..++...     +..+... -.++...-+-.++  -.+++. +  ++.-.+++..+|+..
T Consensus       184 GCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~-~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~  262 (353)
T d1h6la_         184 GMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRA-DGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQ  262 (353)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEEC-SSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecc-cCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecC
Confidence            999999988999998876666666541     1222211 1112222234444  233433 3  555578889999876


Q ss_pred             CC
Q 014154          376 DT  377 (430)
Q Consensus       376 ~~  377 (430)
                      ..
T Consensus       263 ~~  264 (353)
T d1h6la_         263 GQ  264 (353)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.50  E-value=0.16  Score=46.58  Aligned_cols=81  Identities=17%  Similarity=0.167  Sum_probs=51.6

Q ss_pred             CcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCC-e
Q 014154          237 HQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLP-I  315 (430)
Q Consensus       237 g~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~-~  315 (430)
                      |.|.-+|+.+++. +-....+ .++.+=.++..+.++++|+.||.++.||.++|+.+.++.......-.-+.|..+|+ |
T Consensus       466 G~l~AiD~~TG~i-~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcE-EeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5677788888764 3344333 22222123345778889999999999999999999988753111112255667884 5


Q ss_pred             EEEE
Q 014154          316 IASC  319 (430)
Q Consensus       316 l~s~  319 (430)
                      ++..
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.19  Score=40.63  Aligned_cols=196  Identities=9%  Similarity=-0.040  Sum_probs=118.1

Q ss_pred             CceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEE-EEEeCCCcEE
Q 014154          163 GTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKF-VAGTNDHQVR  240 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~  240 (430)
                      ..+..++|++..+.|+... ..+.|+..+++.......+....         ..+.++++  ..-+..| ++-...+.|.
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~---------~~p~~iAv--D~~~~~lY~~d~~~~~I~  104 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL---------GSPEGIAL--DHLGRTIFWTDSQLDRIE  104 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC---------CCEEEEEE--ETTTTEEEEEETTTTEEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecc---------ccccEEEE--eccCCeEEEeccCCCEEE
Confidence            4577899998888887764 45778888887654433332211         34678888  4444445 4555677999


Q ss_pred             EEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC-C--cEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          241 LYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS-G--DLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       241 iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      +.++..... ...+.........+++.|...+|+..... +  .|.--++............ -....++++.+.+..|.
T Consensus       105 ~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~-~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         105 VAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN-LGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             EEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTT-CSCEEEEEEETTTTEEE
T ss_pred             EEecCCceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeec-ccccceEEEeecCcEEE
Confidence            999986442 22333333578899999988777755432 2  3444455433322222222 35678999998887775


Q ss_pred             EE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccc-cccCCCCceEecCCCC
Q 014154          318 SC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVA-NAAADAPMLEIQNGND  376 (430)
Q Consensus       318 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-~~~~~d~~i~~~~~~~  376 (430)
                      .+ ...+.|...++...... .+ +.+- ... .++++. ++.+ .+-...+.|...+...
T Consensus       183 w~d~~~~~I~~~~~~g~~~~-~v-~~~~-~~P-~~lav~-~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         183 WVDAGTHRAECLNPAQPGRR-KV-LEGL-QYP-FAVTSY-GKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             EEETTTTEEEEEETTEEEEE-EE-EECC-CSE-EEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCEEEEEECCCCCeE-EE-ECCC-CCc-EEEEEE-CCEEEEEECCCCEEEEEECCC
Confidence            55 46678999998754433 32 2332 222 566665 3333 5544556666665543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.77  E-value=0.45  Score=39.93  Aligned_cols=191  Identities=7%  Similarity=-0.022  Sum_probs=98.7

Q ss_pred             EEEEcCCCCEEEEEeC------------CCeEEEEECCCCeeeE-e--eCCCCCCCCCCcCCcceeEEEEeecCCCC-EE
Q 014154          167 FSKVDISEKFSLFGGK------------GVEVNVWDLDKCEKIW-T--AKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KF  230 (430)
Q Consensus       167 ~~~~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~-~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l  230 (430)
                      .++..|++..+++++.            .|.|.++|+.+..... .  +.........    -....+.+...+++. +|
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~----f~PhGi~l~~~~dg~~~L  114 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISS----FNPHGISTFIDDDNTVYL  114 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGG----CCEEEEEEEECTTCCEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcc----eeccceeEEEcCCCcEEE
Confidence            4666676666655432            4889999987643321 1  1111110000    112344443345555 44


Q ss_pred             EEEe---CCCcEEEEECCCCCcceEE---Eeec-CCCeEEEEecCCCCEEEEEeC---------------CCcEEEEEcc
Q 014154          231 VAGT---NDHQVRLYDTSAQRRPVMS---FDFR-ETPIKAVAEEPDSFNIYIGNG---------------SGDLASVDIR  288 (430)
Q Consensus       231 ~s~~---~dg~i~iwd~~~~~~~~~~---~~~~-~~~i~~~~~sp~~~~l~~~~~---------------d~~i~iwd~~  288 (430)
                      ++..   ...+|.+|++......+..   +... ......+++..++.+++|-..               -+...+|...
T Consensus       115 ~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            4443   3567888887653321221   2111 235678888888888777311               0223344333


Q ss_pred             CCeEEeeeeCCCCCCeEEEEecCCCCeEEEE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccc-cccccccC
Q 014154          289 TGKLLGCFIGKCSGSIRSIARHPTLPIIASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFAD-KEVANAAA  364 (430)
Q Consensus       289 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~~~~~  364 (430)
                      .++......+  -...+.|+++|++++|+.+ +..+.|++|++.....+..... -+.....-.+.+.+ +|.+..++
T Consensus       195 ~~~~~~~~~~--l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~-~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         195 PNDVRVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV-LSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSCEEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSEEEEEEECTTTCCEEEEE
T ss_pred             CCceEEEcCC--CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEE-ecCCCCCCccEEecCCCEEEEEE
Confidence            3333222333  3467999999999877555 5678899999875433322111 11233345556654 44543333

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.44  Score=38.39  Aligned_cols=202  Identities=9%  Similarity=-0.032  Sum_probs=115.9

Q ss_pred             CCCceEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee----eEeeCCCCCCCCCCcCCcceeEEEEeecCCCC-EEEEEe
Q 014154          161 ASGTIAFSKVDISEKFSLFGG-KGVEVNVWDLDKCEK----IWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHR-KFVAGT  234 (430)
Q Consensus       161 ~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~  234 (430)
                      ....+..++|++..+.|+... ..+.|...++.....    ...+...         ...+..+++  .+-+. +.++-.
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~---------~~~p~glAv--D~~~~~lY~~d~   96 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD---------IQAPDGLAV--DWIHSNIYWTDS   96 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS---------CSCCCEEEE--ETTTTEEEEEET
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCC---------CCCcceEEE--eeccceEEEEec
Confidence            345677899999888887664 455677666643211    1111111         133566777  44444 444445


Q ss_pred             CCCcEEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEe--CCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCC
Q 014154          235 NDHQVRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGN--GSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPT  312 (430)
Q Consensus       235 ~dg~i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~  312 (430)
                      ..+.|.+.++..... ...+.........++++|...+|+...  ..+.|...++............ -....++++.+.
T Consensus        97 ~~~~I~v~~~~g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~-~~~p~gl~iD~~  174 (266)
T d1ijqa1          97 VLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN-IQWPNGITLDLL  174 (266)
T ss_dssp             TTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS-CSCEEEEEEETT
T ss_pred             CCCEEEeEecCCceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccc-cceeeEEEeecc
Confidence            667899999986442 334444456788999998766666554  3346777777544333223222 456789999988


Q ss_pred             CCeEEEE-eCCCcEEEEECCCCceeeEEEeeccccceEEeeeccccccccccCCCCceEecCCCC
Q 014154          313 LPIIASC-GLDSYLRFWDIKTRQLLSAVFLKQHLNEVVFDSAFADKEVANAAADAPMLEIQNGND  376 (430)
Q Consensus       313 ~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~~~~~~d~~i~~~~~~~  376 (430)
                      +..|..+ ...+.|...++........+........ ..++++..+.-+.+-..++.|...+...
T Consensus       175 ~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~-p~~lav~~~~ly~td~~~~~I~~~~~~~  238 (266)
T d1ijqa1         175 SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAH-PFSLAVFEDKVFWTDIINEAIFSANRLT  238 (266)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSS-EEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             ccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccc-cEEEEEECCEEEEEECCCCeEEEEECCC
Confidence            7766665 5567899999865443332212222122 3566666333335545566666555433

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=95.54  E-value=0.16  Score=43.52  Aligned_cols=111  Identities=7%  Similarity=-0.029  Sum_probs=71.9

Q ss_pred             cCCCCEEEEEeCCC-----------cEEEEECCCCCc-ceEEE-eecCCCeEEEEecCCCCEEEEEeCC-CcEEEEEccC
Q 014154          224 IDDHRKFVAGTNDH-----------QVRLYDTSAQRR-PVMSF-DFRETPIKAVAEEPDSFNIYIGNGS-GDLASVDIRT  289 (430)
Q Consensus       224 ~~~~~~l~s~~~dg-----------~i~iwd~~~~~~-~~~~~-~~~~~~i~~~~~sp~~~~l~~~~~d-~~i~iwd~~~  289 (430)
                      ..++++++.|+.+.           .+.+||+.++.- ..... ..+.......++.+++++++.|+.+ ..+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            56788888887531           367999987542 11222 2233334466788999999888755 6899999988


Q ss_pred             CeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC------CcEEEEECCCCc
Q 014154          290 GKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD------SYLRFWDIKTRQ  334 (430)
Q Consensus       290 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d------g~i~iwd~~~~~  334 (430)
                      ..-...-.......-..++..+||++++.++.+      ..+.+||..+.+
T Consensus       108 ~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         108 DSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            765322111112223456777899999888753      358999988754

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.36  E-value=0.11  Score=43.96  Aligned_cols=154  Identities=10%  Similarity=0.065  Sum_probs=88.9

Q ss_pred             EEEEeecCCCCEEEEEeC------------CCcEEEEECCCCCcceEEEeecC-------CCeEEEEe--cCCCC-EEEE
Q 014154          218 SAAFLSIDDHRKFVAGTN------------DHQVRLYDTSAQRRPVMSFDFRE-------TPIKAVAE--EPDSF-NIYI  275 (430)
Q Consensus       218 ~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~-------~~i~~~~~--sp~~~-~l~~  275 (430)
                      .++.  .|++..+++++.            .|.|.++|+.+.......+....       .....+.+  .+++. +|++
T Consensus        39 Di~~--~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          39 DLEI--LPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             EEEE--CTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             eEEE--CCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            4555  567766665532            48999999987544333333221       12344443  44554 3444


Q ss_pred             Ee---CCCcEEEEEccCC--eE--EeeeeCCCCCCeEEEEecCCCCeEEEEeC---------------CCcEEEEECCCC
Q 014154          276 GN---GSGDLASVDIRTG--KL--LGCFIGKCSGSIRSIARHPTLPIIASCGL---------------DSYLRFWDIKTR  333 (430)
Q Consensus       276 ~~---~d~~i~iwd~~~~--~~--~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---------------dg~i~iwd~~~~  333 (430)
                      ..   ...+|.+|++...  +.  +.++........+.+++..++.+++|-..               -+...+|....+
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   3467888887533  22  23333332356789999999988888321               123344444444


Q ss_pred             ceeeEEEeeccccceEEeeeccccccc--cccCCCCceEecCCCCC
Q 014154          334 QLLSAVFLKQHLNEVVFDSAFADKEVA--NAAADAPMLEIQNGNDT  377 (430)
Q Consensus       334 ~~~~~~~~~~~~~~~v~~~~~s~~g~~--~~~~~d~~i~~~~~~~~  377 (430)
                      .....  ..+ .. ..+.++++||+++  ++.+..+.|++|+....
T Consensus       197 ~~~~~--~~~-l~-~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         197 DVRVV--AEG-FD-FANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             CEEEE--EEE-ES-SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             ceEEE--cCC-CC-ccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            33221  222 12 3488999999986  67778889999987654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.61  Score=37.41  Aligned_cols=161  Identities=6%  Similarity=-0.102  Sum_probs=99.3

Q ss_pred             CceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCC-Cc--
Q 014154          163 GTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTND-HQ--  238 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--  238 (430)
                      ..+..++++.-+..|+.+ ...+.|.+.++........+...         ...+..+++  .|...+|+..... +.  
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~---------l~~p~~l~v--dp~~g~ly~t~~~~~~~~  147 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG---------LVNPRGIVT--DPVRGNLYWTDWNRDNPK  147 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS---------CSSEEEEEE--ETTTTEEEEEECCSSSCE
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc---------ccCCcEEEE--ecccCcEEEeecCCCCcE
Confidence            467889998766666655 45678999998754432222221         144678888  5655555543322 23  


Q ss_pred             EEEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-eCCCcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          239 VRLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       239 i~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      |.--++..... .......-....+|++.+.++.|+.. ...+.|...|+........+.+.  ....+|++.  +.+|.
T Consensus       148 I~r~~~dG~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~--~~P~~lav~--~~~lY  222 (263)
T d1npea_         148 IETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL--QYPFAVTSY--GKNLY  222 (263)
T ss_dssp             EEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC--CSEEEEEEE--TTEEE
T ss_pred             EEEecCCCCCc-eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC--CCcEEEEEE--CCEEE
Confidence            44445654332 22232233456899998888777655 45688999998655544444543  234678775  34454


Q ss_pred             -EEeCCCcEEEEECCCCceeeEE
Q 014154          318 -SCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       318 -s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                       +-...+.|...|..+++.+..+
T Consensus       223 wtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         223 YTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEECCCCEEEEEECCCCccceEE
Confidence             4446688999999988887764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.51  Score=40.05  Aligned_cols=149  Identities=11%  Similarity=0.026  Sum_probs=87.4

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEE
Q 014154          163 GTIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLY  242 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  242 (430)
                      ....-+++++...+++.|+.+ .+.|..+..-+....................|..++|  +  +..|+.. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vaf--s--~d~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--H--GDQVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--E--TTEEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCC-EEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEe--e--CCEEEEE-eCCCEEEE
Confidence            446678888888888888877 4667765321110000000000000001135788888  3  3345554 45678888


Q ss_pred             ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCCCcEEEEEccCCeEEeeeeCC----CCCCeEEEEecCCCCeEEE
Q 014154          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGSGDLASVDIRTGKLLGCFIGK----CSGSIRSIARHPTLPIIAS  318 (430)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s  318 (430)
                      +...-.. ......-..++.++.++|.  .++....++.+.++++..++......+-    -...+.+++|++.|..+++
T Consensus       111 ~~~~l~~-~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         111 DLEELSE-FRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             ESSSTTC-EEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             Eeecccc-ccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEE
Confidence            8776432 3333334567888888775  5666778999999999887643222110    0346788888888877777


Q ss_pred             Ee
Q 014154          319 CG  320 (430)
Q Consensus       319 ~~  320 (430)
                      +.
T Consensus       188 ~~  189 (381)
T d1xipa_         188 WR  189 (381)
T ss_dssp             EE
T ss_pred             eC
Confidence            64

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.01  E-value=1.7  Score=37.59  Aligned_cols=100  Identities=15%  Similarity=0.064  Sum_probs=56.9

Q ss_pred             CCcEEEEECCCCCc-c-eEEEeecCCCeEEEEecCCCCEEEEEe-CC--CcEEEEEccCCeEEeeeeCCCCCCeEEEEec
Q 014154          236 DHQVRLYDTSAQRR-P-VMSFDFRETPIKAVAEEPDSFNIYIGN-GS--GDLASVDIRTGKLLGCFIGKCSGSIRSIARH  310 (430)
Q Consensus       236 dg~i~iwd~~~~~~-~-~~~~~~~~~~i~~~~~sp~~~~l~~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~  310 (430)
                      ++.|...++..... . ...+..+...+..-.+...+.+|+... .+  ..|+++++..+.....+... .+.|..+...
T Consensus       310 ~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~sv~~~~~~  388 (430)
T d1qfma1         310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-VGSVVGYSGQ  388 (430)
T ss_dssp             TCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-SSEEEEEECC
T ss_pred             cceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCC-CceEeeccCC
Confidence            35666677765432 1 223333444454434444455666554 44  35889999888775554443 5566666665


Q ss_pred             CCCCeEEEE--e--CCCcEEEEECCCCcee
Q 014154          311 PTLPIIASC--G--LDSYLRFWDIKTRQLL  336 (430)
Q Consensus       311 ~~~~~l~s~--~--~dg~i~iwd~~~~~~~  336 (430)
                      ++...+...  |  .=.+++-+|+.+++..
T Consensus       389 ~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         389 KKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             TTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             CCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence            655543322  2  2267999999988653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=93.34  E-value=1.9  Score=36.02  Aligned_cols=218  Identities=11%  Similarity=0.098  Sum_probs=114.4

Q ss_pred             cceeeecCCCceEEEEccCCCCCcceeeeecCCCCCCcceeeeeecC--CCCCceeEEee--cC--CeEEEecCCC-Ccc
Q 014154           15 LRALTFDSLGLIKVIEARGEHGGVPKVVERWGDPHSSNCVLAASIDD--SQNDPLLAVAR--KN--GLTDILNPLN-GDL   87 (430)
Q Consensus        15 ~~l~t~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~g~~l~~g~--~d--g~i~iwd~~~-~~~   87 (430)
                      ..++..+..+-|.+||+++      +.++.+..  +.+.-+.+....  .-...-|++++  .+  .+|.+|.+.. ...
T Consensus        41 SlI~gTdK~~Gl~vYdL~G------~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLEG------KMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             CEEEEEETTSCCEEEETTC------CEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             cEEEEEcCcCCEEEEcCCC------cEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            3455566666799999986      55655542  222233322110  11112244444  22  3577887742 222


Q ss_pred             cceeeccCCCCCCCCCCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEE
Q 014154           88 RVAISNAGDSGAQPEDDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAF  167 (430)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~  167 (430)
                      +..+..... ........+.+++++.....    ..-.++.....|.+..|.+....... ..-..++.|.  ....+..
T Consensus       113 l~~~~~~~~-p~~~~~~~vYGlc~y~~~~~----g~~~afv~~k~G~v~q~~l~~~~~g~-v~~~lvr~f~--~~~q~EG  184 (353)
T d1h6la_         113 LQSITDPNR-PIASAIDEVYGFSLYHSQKT----GKYYAMVTGKEGEFEQYELNADKNGY-ISGKKVRAFK--MNSQTEG  184 (353)
T ss_dssp             EEECSCSSS-CEECSSSSCCCEEEEECTTT----CCEEEEEECSSSEEEEEEEEECTTSS-EEEEEEEEEE--CSSCEEE
T ss_pred             ccccccccc-ccccccCcceEEEEEecCCC----CeEEEEEEcCCceEEEEEEEcCCCCc-eeeEeeeccC--CCCccce
Confidence            222221100 00111223456677654320    11245667778888888876543200 0011344444  4578999


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCC-----CeeeEeeCCCCCCCCCCcCCcceeEEEEeecCC--CCEEEEEeCCCcEE
Q 014154          168 SKVDISEKFSLFGGKGVEVNVWDLDK-----CEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDD--HRKFVAGTNDHQVR  240 (430)
Q Consensus       168 ~~~~~~~~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~~~dg~i~  240 (430)
                      +.++.....|+.+-.+.-|+.++.+.     ...+.......       ....+..++.....+  |-+|+|.-.+++..
T Consensus       185 CVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~-------l~~D~EGlaiy~~~~~~GylivSsQG~n~f~  257 (353)
T d1h6la_         185 MAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRH-------LTPDIEGLTIYYAADGKGYLLASSQGNSSYA  257 (353)
T ss_dssp             EEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSS-------CCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             EEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCcc-------ccCCccccEEEEcCCCCeEEEEEcCCCCeEE
Confidence            99999999999998887777777642     12222221110       124577777653433  34555555678899


Q ss_pred             EEECCCCCcceEEEe
Q 014154          241 LYDTSAQRRPVMSFD  255 (430)
Q Consensus       241 iwd~~~~~~~~~~~~  255 (430)
                      +||.......+..|.
T Consensus       258 vydr~~~~~~~g~F~  272 (353)
T d1h6la_         258 IYERQGQNKYVADFQ  272 (353)
T ss_dssp             EEESSTTCCEEEEEE
T ss_pred             EEecCCCccccceEE
Confidence            999886544444443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=1.5  Score=34.96  Aligned_cols=164  Identities=9%  Similarity=-0.115  Sum_probs=98.3

Q ss_pred             CceEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEe--CCCcE
Q 014154          163 GTIAFSKVDISEKFSLFG-GKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGT--NDHQV  239 (430)
Q Consensus       163 ~~i~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i  239 (430)
                      ..+..+++++.+..|+.. ...+.|.+.++........+....         .....+++  .|...+|....  ..+.|
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~---------~~P~~l~v--d~~~g~ly~~~~~~~~~I  145 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---------SKPRAIVV--DPVHGFMYWTDWGTPAKI  145 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---------CCEEEEEE--ETTTTEEEEEECSSSCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCC---------CCcceEEE--EcccCeEEEeccCCCcce
Confidence            456788998866666655 456789999997655433333221         44677888  55444444333  33457


Q ss_pred             EEEECCCCCcceEEEeecCCCeEEEEecCCCCEEEEE-eCCCcEEEEEccCCeEEeeeeCC-CCCCeEEEEecCCCCeEE
Q 014154          240 RLYDTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIG-NGSGDLASVDIRTGKLLGCFIGK-CSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       240 ~iwd~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~  317 (430)
                      .-.++.... ........-....++++.+.++.|+.+ ...+.|...|+........+... ......++++. .+.+..
T Consensus       146 ~r~~~dGs~-~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~  223 (266)
T d1ijqa1         146 KKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFW  223 (266)
T ss_dssp             EEEETTSCC-EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEE
T ss_pred             eEeccCCCc-eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEE
Confidence            667776432 222233333567899999887766665 45688999998654433223222 12345677775 233344


Q ss_pred             EEeCCCcEEEEECCCCceeeEE
Q 014154          318 SCGLDSYLRFWDIKTRQLLSAV  339 (430)
Q Consensus       318 s~~~dg~i~iwd~~~~~~~~~~  339 (430)
                      +-..++.|+..+..+++....+
T Consensus       224 td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         224 TDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EETTTTEEEEEETTTCCCCEEE
T ss_pred             EECCCCeEEEEECCCCcceEEE
Confidence            4446788888888887766553

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.31  E-value=0.49  Score=41.18  Aligned_cols=98  Identities=11%  Similarity=-0.029  Sum_probs=62.5

Q ss_pred             eEEEEecCCCCEEEEEe-CC----CcEEEEEccCCeEEeeeeCCCCCCeEEEEecCCCCeEEEEeCC-------------
Q 014154          261 IKAVAEEPDSFNIYIGN-GS----GDLASVDIRTGKLLGCFIGKCSGSIRSIARHPTLPIIASCGLD-------------  322 (430)
Q Consensus       261 i~~~~~sp~~~~l~~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d-------------  322 (430)
                      +..+++||++++++.+- .+    ..|+++|+.+++.+.....  ......++|++++..|+-...|             
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~  204 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence            44567899999888543 22    4699999999987642221  1223568899999877655432             


Q ss_pred             ---CcEEEEECCCCceeeEEEeeccc-cceEEeeeccccccc
Q 014154          323 ---SYLRFWDIKTRQLLSAVFLKQHL-NEVVFDSAFADKEVA  360 (430)
Q Consensus       323 ---g~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~  360 (430)
                         ..|..+.+.+...-..+.+.... ...+..+..++++++
T Consensus       205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~  246 (430)
T d1qfma1         205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY  246 (430)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred             CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcce
Confidence               25888888776543333233221 234567778889887

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.63  E-value=1.6  Score=33.23  Aligned_cols=156  Identities=15%  Similarity=0.120  Sum_probs=83.2

Q ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCC-CCcCCcceeEEEEeecCCCCEEEEEeC-CCcEEEE
Q 014154          165 IAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSL-GIFTPTWFTSAAFLSIDDHRKFVAGTN-DHQVRLY  242 (430)
Q Consensus       165 i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iw  242 (430)
                      |.+++.. +.+..++|+......+|-++.|+...-...+. ..+ .--....|..+.+. .++..-++++.. .|.++++
T Consensus       106 I~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPp-FsFVtDI~~d~I~G~g~~-~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         106 ILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPG-FGFVSDIRGDLIAGLGFF-GGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             EEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESS-CEEEEEEETTEEEEEEEE-ETTEEEEEEEETTTEEEEEE
T ss_pred             EEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCC-cceEEeccCCeEEEEeee-cCCcceEEEEecccCCEEEe
Confidence            4445554 56777888888889999888776532211110 000 00000223333333 222233333333 4444444


Q ss_pred             ECCCCCcceEEEeecCCCeEEEEecCCCCEEEEEeCC---CcEEEEEccCCeEEe-eeeCC-----CCCCeEEEEecCCC
Q 014154          243 DTSAQRRPVMSFDFRETPIKAVAEEPDSFNIYIGNGS---GDLASVDIRTGKLLG-CFIGK-----CSGSIRSIARHPTL  313 (430)
Q Consensus       243 d~~~~~~~~~~~~~~~~~i~~~~~sp~~~~l~~~~~d---~~i~iwd~~~~~~~~-~~~~~-----~~~~v~~i~~~~~~  313 (430)
                      +            ..++.++...+++..+. +++-+.   ....-+|++.++.-. .+...     ..-.|+-+-+.|++
T Consensus       183 t------------pkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd  249 (313)
T d2hu7a1         183 D------------SGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDG  249 (313)
T ss_dssp             C------------CSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTS
T ss_pred             c------------CCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCC
Confidence            4            44455666666665544 444321   122245888766432 22211     12356667789999


Q ss_pred             CeEEEEeCCCcEEEEECCCCceeeE
Q 014154          314 PIIASCGLDSYLRFWDIKTRQLLSA  338 (430)
Q Consensus       314 ~~l~s~~~dg~i~iwd~~~~~~~~~  338 (430)
                      ++++.+-.||.=++|.  +|+.+..
T Consensus       250 ~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         250 RLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             CEEEEEEETTEEEEEE--TTEEECC
T ss_pred             cEEEEEecCCchheee--cceEecC
Confidence            9989999999999987  4565544

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.23  E-value=3.7  Score=34.56  Aligned_cols=137  Identities=11%  Similarity=-0.000  Sum_probs=75.9

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEE
Q 014154          164 TIAFSKVDISEKFSLFGGKGVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYD  243 (430)
Q Consensus       164 ~i~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  243 (430)
                      .|..++|+.+  .|+.. .++.+..++...-..........         ..+..+.+  .|  ..++....++.+.+++
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~---------~~~~~~~~--~p--~~~~l~~~~~~~~~~~  151 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFE---------KPVFQLKN--VN--NTLVILNSVNDLSALD  151 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECS---------SCEEEEEE--CS--SEEEEEETTSEEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeecccccccccccc---------ccccceec--CC--ceeEEEecCCCEEEEE
Confidence            5788888744  45544 44568888876533322221111         33556665  44  4677778899999999


Q ss_pred             CCCCCcceEEEe-----ecCCCeEEEEecCCCCEEEEEeCCCcEEEE-EccCCeEEeeeeCCCCCCeEEEEecCCCCeEE
Q 014154          244 TSAQRRPVMSFD-----FRETPIKAVAEEPDSFNIYIGNGSGDLASV-DIRTGKLLGCFIGKCSGSIRSIARHPTLPIIA  317 (430)
Q Consensus       244 ~~~~~~~~~~~~-----~~~~~i~~~~~sp~~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~  317 (430)
                      +..... .....     .-.+.+.+++|++.+..++++..+. ..+- ++.....+...... ...|.+|.|-.+..+++
T Consensus       152 l~~~~~-~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~-~~~v~sI~WL~~~~F~v  228 (381)
T d1xipa_         152 LRTKST-KQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVE-EYSPLSVTILSPQDFLA  228 (381)
T ss_dssp             TTTCCE-EEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTT-TSEEEEEEESSSSEEEE
T ss_pred             eccCcc-ccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCC-CcceeEEEEecCceEEE
Confidence            987642 11111     1135678888888887777764332 1111 11111111000111 34688899987776665


Q ss_pred             EE
Q 014154          318 SC  319 (430)
Q Consensus       318 s~  319 (430)
                      +-
T Consensus       229 vy  230 (381)
T d1xipa_         229 VF  230 (381)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.96  E-value=4.4  Score=35.04  Aligned_cols=106  Identities=11%  Similarity=0.064  Sum_probs=60.4

Q ss_pred             cceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCCcc-eEEEe------ecCCCeEEEEecCC---CCEEEEEeC-----
Q 014154          214 TWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQRRP-VMSFD------FRETPIKAVAEEPD---SFNIYIGNG-----  278 (430)
Q Consensus       214 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~------~~~~~i~~~~~sp~---~~~l~~~~~-----  278 (430)
                      ...++++|  .|++++|++--..|.|++++..++... +..+.      ..+.....|+|+|+   ..+|+....     
T Consensus        27 ~~P~~la~--~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~  104 (450)
T d1crua_          27 NKPHALLW--GPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (450)
T ss_dssp             SSEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEE--eCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence            45789999  789988887545799999988765421 11111      11346788999985   345544321     


Q ss_pred             --C----C--cEEEEEccCCe-------E-EeeeeCCCCCCeEEEEecCCCCeEEEEeC
Q 014154          279 --S----G--DLASVDIRTGK-------L-LGCFIGKCSGSIRSIARHPTLPIIASCGL  321 (430)
Q Consensus       279 --d----~--~i~iwd~~~~~-------~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~  321 (430)
                        +    +  .+..+......       . +..+..........|.|.||+.+.++.+.
T Consensus       105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence              1    1  13333332211       1 11111111234578999999987777664

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.66  E-value=10  Score=30.95  Aligned_cols=176  Identities=11%  Similarity=0.110  Sum_probs=95.7

Q ss_pred             CCceEEEEEeecCcccccccCceEEEEccCCeeEEEEeeecCccccCCCcceEEeeecCCCceEEEEEcCCCCEEEEEeC
Q 014154          103 DDGIVGLHLFKRQREESSSRSRTLLTCTTKGKASMRSIEVTKVSAESSCSTVKSWNVCASGTIAFSKVDISEKFSLFGGK  182 (430)
Q Consensus       103 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~l~~~~~  182 (430)
                      ...+..+...+....+     ..++..+..|.+....+..-..  ....+.+....+..+..+..+.+......++.++.
T Consensus        91 ~e~ii~~~~~~~~~~~-----~~l~~~Tk~G~iKr~~l~~f~~--~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~t~  163 (323)
T d1wp5a_          91 DEEIIKAIPINDFELN-----GYFLFVTRNGMVKKTELKHYKA--QRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTH  163 (323)
T ss_dssp             TCCEEEEEEESCTTSS-----CEEEEEETTSEEEEEEGGGGCC--SCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEET
T ss_pred             CcceEEEeeccccccc-----eeEEEEeehhheeeccHHHhhh--hhccchhhhccccccccccceeccCCCeEEEEEEe
Confidence            3455544444432212     5888899999998888754321  01112334445556677788888777788999999


Q ss_pred             CCeEEEEECCCCeeeEeeCCCCCCCCCCcCCcceeEEEEeecCCCCEEEEEeCCCcEEEEECCCCC------cceEEEe-
Q 014154          183 GVEVNVWDLDKCEKIWTAKPPPKNSLGIFTPTWFTSAAFLSIDDHRKFVAGTNDHQVRLYDTSAQR------RPVMSFD-  255 (430)
Q Consensus       183 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~-  255 (430)
                      .|.+..|+.+.-..... .........+...+.+.+.... .+++..|++.+..|..+.-.+....      .-+..+. 
T Consensus       164 ~G~~lrf~~~~vr~~gr-~a~GV~~ikL~~~D~vv~~~~~-~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k~  241 (323)
T d1wp5a_         164 NGYALWFDESEVSIVGV-RAAGVKGMNLKEGDYIVSGQLI-TSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRE  241 (323)
T ss_dssp             TSEEEEEEGGGSCBCCS-SCCCEECCCCCTTCCEEEEEEE-CCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCC
T ss_pred             cceeeEeecccccccCc-ccccccccccccccccchhhhc-cccccceeeeeeeheeecccchhhccccccccccccccc
Confidence            99999998764322210 0011111112222445544443 4566778888999988876554311      0011111 


Q ss_pred             --ecCCCeEEEEecCCCCEEEEEeCCCcEEEEEc
Q 014154          256 --FRETPIKAVAEEPDSFNIYIGNGSGDLASVDI  287 (430)
Q Consensus       256 --~~~~~i~~~~~sp~~~~l~~~~~d~~i~iwd~  287 (430)
                        .....|..+....+...|+..+..|.+.-.++
T Consensus       242 ~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~  275 (323)
T d1wp5a_         242 LKANPHRISGFVVAQDSDTIYLQTEKSFIETIKV  275 (323)
T ss_dssp             CSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEG
T ss_pred             cccccceeeeeEecCCCCEEEEEeCCCEEEEEEh
Confidence              11123444444444445555666666554444