Citrus Sinensis ID: 014196
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 429 | 2.2.26 [Sep-21-2011] | |||||||
| Q9CAG5 | 782 | U-box domain-containing p | no | no | 0.668 | 0.367 | 0.281 | 5e-16 | |
| Q8GUG9 | 612 | U-box domain-containing p | no | no | 0.645 | 0.452 | 0.277 | 4e-15 | |
| Q9C7G1 | 768 | U-box domain-containing p | no | no | 0.736 | 0.411 | 0.275 | 9e-15 | |
| O48700 | 771 | U-box domain-containing p | no | no | 0.641 | 0.356 | 0.250 | 2e-12 | |
| Q8GWV5 | 760 | U-box domain-containing p | no | no | 0.650 | 0.367 | 0.267 | 1e-10 | |
| Q8VZ40 | 632 | U-box domain-containing p | no | no | 0.620 | 0.420 | 0.271 | 2e-10 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.631 | 0.414 | 0.249 | 1e-08 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.650 | 0.394 | 0.235 | 1e-07 | |
| O22193 | 826 | U-box domain-containing p | no | no | 0.580 | 0.301 | 0.225 | 3e-07 | |
| Q681N2 | 660 | U-box domain-containing p | no | no | 0.682 | 0.443 | 0.251 | 9e-07 |
| >sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 145/302 (48%), Gaps = 15/302 (4%)
Query: 87 EEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAA----IKALIQLA 142
E+K ++I L K+D + + M G ++ L+ + + V AA AL LA
Sbjct: 439 EKKCKVVEKIRLLLKDDEEARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMALFNLA 498
Query: 143 NGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFL 202
NK +M+ +G++ L K + + + + L L+LS L + SS+ +PFL
Sbjct: 499 VNNNRNKELMLTSGVIRLLEKMISSAE--SHGSATALYLNLSCLDEAKSVIGSSQAVPFL 556
Query: 203 VGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLK-LCSMKERLS-EKSLA 260
V +L+ + K + ALYNLS N ++S+ ++ +L L S E L EKSLA
Sbjct: 557 VQLLQKEIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENLWIEKSLA 616
Query: 261 TLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMA 320
L NL + GK S + SL +L + + QE + L+IL + +
Sbjct: 617 VLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTE-QEQAVSCLLILCNGRESCIQMVL 675
Query: 321 KSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSG----PQTR--RVSIGSP 374
+ G++ + +++ G+P + ++ KLL F++ERQ + P S PQ R S+ +P
Sbjct: 676 QEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQRDQPSSNRDEPPQKEPARKSLSAP 735
Query: 375 VS 376
+S
Sbjct: 736 LS 737
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 143/285 (50%), Gaps = 8/285 (2%)
Query: 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIG 129
D +++ V+RL S E++ A EI L+K + L+AE G I +LV+++++E +
Sbjct: 329 DMSVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVA 388
Query: 130 RRRAAIKALIQLANGTY-TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN 188
+ AI ++ L+ Y NK +++ AG +T + + + A R L SLS
Sbjct: 389 TQENAITCVLNLS--IYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADE 446
Query: 189 THIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC 248
I + S +P LV +LE+G+ K+ AL+NL N V G+V L+K+
Sbjct: 447 NKIIIGGSGAIPALVDLLENGTPRGKKDAAT-ALFNLCIYHGNKGRAVRAGIVTALVKML 505
Query: 249 --SMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306
S + R+ +++L L L K A+ + +P +LI IL ++ + +E +A IL+
Sbjct: 506 SDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLP-ALIGILQ-TDQTRNRENAAAILL 563
Query: 307 ILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351
L + +E+ + + G V + L+ G+ +R+A LL+ +
Sbjct: 564 SLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 91/330 (27%), Positives = 163/330 (49%), Gaps = 14/330 (4%)
Query: 50 EEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRL----HFGSWEEKEMAAKEIEKLAKEDVK 105
EE I EE +S+ +ED L+++ + L + +K ++I L K+D +
Sbjct: 398 EESGTIKEEAC--ESEYQEDQVTLVERCTELLTTLTDVDTLRKKCRVVEQIRVLLKDDEE 455
Query: 106 IKKLMAELGVIQMLVSMVSTEVIGRRRAAIK----ALIQLANGTYTNKAIMVEAGILTKL 161
+ LM E G ++ L+ + + + +A K AL LA NK +M+ +GI+ L
Sbjct: 456 ARILMGENGCVEALLQFLGSALNENNASAQKVGAMALFNLAVDNNRNKELMLASGIIPLL 515
Query: 162 PKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGA 221
+ + + + + L+LS L + SS +PF+V +L + + V+ K + +
Sbjct: 516 EEML--CNPHSHGSVTAIYLNLSCLEEAKPVIGSSLAVPFMVNLLWTETEVQCKVDALHS 573
Query: 222 LYNLSAVLDNARPMVSNGVVHTLLKLC-SMKERLSEKSLATLGNLVVTSTGKKAMEDSPL 280
L++LS N ++S +V+ L L S ++R +EKSLA L NLV+ GK M +P
Sbjct: 574 LFHLSTYPPNIPCLLSADLVNALQSLTISDEQRWTEKSLAVLLNLVLNEAGKDEMVSAPS 633
Query: 281 VPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQ 340
+ +L IL E P QE + +L+IL + S + + + G++ + +++ G+ +
Sbjct: 634 LVSNLCTILDTGE-PNEQEQAVSLLLILCNHSEICSEMVLQEGVIPSLVSISVNGTQRGR 692
Query: 341 RRASKLLQWFKDERQAKMGPHSGPQTRRVS 370
RA KLL F++ RQ + PQ V+
Sbjct: 693 ERAQKLLTLFRELRQRDQTHLTEPQHTEVT 722
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/283 (25%), Positives = 134/283 (47%), Gaps = 8/283 (2%)
Query: 99 LAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIK----ALIQLANGTYTNKAIMVE 154
L K++ + + LM G ++ + + + V AA + AL LA NK +M+
Sbjct: 451 LLKDNEEARILMGANGFVEAFLQFLESAVHDNNAAAQETGAMALFNLAVNNNRNKELMLT 510
Query: 155 AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVET 214
+G++ L K + ++ L L+LS L + SS+ + F V +L + +
Sbjct: 511 SGVIPLLEKMISC--SQSQGPATALYLNLSCLEKAKPVIGSSQAVSFFVNLLLQDTKTQC 568
Query: 215 KELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLS-EKSLATLGNLVVTSTGKK 273
K + ALYNLS N ++S+ ++ +L L S L EKSLA L NL + GK+
Sbjct: 569 KLDALHALYNLSTYSPNIPTLLSSNIIKSLQVLASTGNHLWIEKSLAVLLNLASSREGKE 628
Query: 274 AMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL 333
M + + +L +L + + QE + L+IL S + + G++ + +++
Sbjct: 629 EMITTQGMISTLATVLDTGDTVE-QEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSISV 687
Query: 334 LGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRRVSIGSPVS 376
GSP + ++ KLL F+++R + + R ++ +P++
Sbjct: 688 NGSPRGRDKSQKLLMLFREQRHRDQPSPNKEEAPRKTVSAPMA 730
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 138/284 (48%), Gaps = 5/284 (1%)
Query: 76 KSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAI 135
K V+ L GS + K AA EI L ++ + + G I L+S++ +E + A+
Sbjct: 476 KLVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLLYSEEKLTQEHAV 535
Query: 136 KALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLS 194
AL+ L+ + NKA++VE G + L ++ ++ + L SLS L N
Sbjct: 536 TALLNLSI-SELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIGQ 594
Query: 195 SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERL 254
S+ + LV +L G+ K+ AL+NLS DN +V V L++L +
Sbjct: 595 SNAAIQALVNLLGKGT-FRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLEM 653
Query: 255 SEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSE 314
+K++A L NL G++A+ +P L+E + + + +E +A +L+ L S +
Sbjct: 654 VDKAVALLANLSAVGEGRQAIVREGGIP-LLVETVDLGSQ-RGKENAASVLLQLCLNSPK 711
Query: 315 QRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKM 358
+ + G + + L+ G+ A+ +A +LL F+++R A+M
Sbjct: 712 FCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDARM 755
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 136/273 (49%), Gaps = 7/273 (2%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
+++L G+ E++ AA E+ LAK +V + +AE G I +LV ++S+ + ++ A
Sbjct: 351 LEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTA 410
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE 197
L+ L+ NK +V+AG +T + + + R L SLS + + + ++
Sbjct: 411 LLNLSINE-GNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAG 469
Query: 198 ILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKERLSE 256
+ L+ +LE G+ K+ A++NL N V G+V L +L + +
Sbjct: 470 AIQALISLLEEGTRRGKKDAAT-AIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVD 528
Query: 257 KSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQR 316
++LA L L GK A+ ++ +P L+EI+ P+ +E +A IL L + E R
Sbjct: 529 EALAILAILSTNQEGKTAIAEAESIP-VLVEIIR-TGSPRNRENAAAILWYLCIGNIE-R 585
Query: 317 DKMAKSGIVHVSL-QLALLGSPLAQRRASKLLQ 348
+A+ V+L +L G+ A+R+A+ LL+
Sbjct: 586 LNVAREVGADVALKELTENGTDRAKRKAASLLE 618
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Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 135/281 (48%), Gaps = 10/281 (3%)
Query: 87 EEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGR-RRAAIKALIQLANGT 145
E++ AA EI LAK++ + +A G I +LV++++ R + A+ +++ L+
Sbjct: 370 EDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSICQ 429
Query: 146 YTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGI 205
I+ +G + + + R L SLS + + + ++ +P LV +
Sbjct: 430 ENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTL 489
Query: 206 LESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKER-LSEKSLATLGN 264
L GS K+ AL+NL N V G+V L++L + E + ++SL+ L
Sbjct: 490 LSEGSQRGKKDAAT-ALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAI 548
Query: 265 LVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGI 324
L GK + + VP L++ + P+ +E SA +L+ L + + + K GI
Sbjct: 549 LSSHPDGKSEVGAADAVP-VLVDFIR-SGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGI 606
Query: 325 VHVSLQLALLGSPLAQRRASKLLQWFK--DERQAKMGPHSG 363
+ + +++A G+ +R+A++LL F +++Q + HSG
Sbjct: 607 MDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQKQ---HSG 644
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 129/284 (45%), Gaps = 5/284 (1%)
Query: 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRA 133
++K + L S + + A I LA+ + ++A I LVS++ + +
Sbjct: 423 VKKLIDDLKSSSLDTQREATARIRILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQAD 482
Query: 134 AIKALIQLANGTYTNKAIMVEAGILTKLPKNV-DAVDESTRHEFGELLLSLSSLANTHIP 192
A+ L+ L+ NK+++ E+G + L + E + L SLS +
Sbjct: 483 AVTCLLNLSIND-NNKSLIAESGAIVPLIHVLKTGYLEEAKANSAATLFSLSVIEEYKTE 541
Query: 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE 252
+ + + LV +L SGS + K+ AL+NLS +N ++ G V L++L
Sbjct: 542 IGEAGAIEPLVDLLGSGS-LSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDPAF 600
Query: 253 RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS 312
+ EK++ L NL GK A+ + +P L+E++ + +A +L + H S
Sbjct: 601 GMVEKAVVVLANLATVREGKIAIGEEGGIP-VLVEVVELGSARGKENATAALLQLCTH-S 658
Query: 313 SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQA 356
+ + + + G++ + L G+ + +A LL++FK RQ+
Sbjct: 659 PKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFKAHRQS 702
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 130/301 (43%), Gaps = 52/301 (17%)
Query: 99 LAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGIL 158
L++ + ++KKL+ EL + + +R A L LA N+ ++ +G +
Sbjct: 536 LSEVETQVKKLVEEL----------KSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAI 585
Query: 159 TKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSS------- 211
L + + + D +T+ LL+LS N ++ + + L+ +LE+GSS
Sbjct: 586 VLLVELLYSTDSATQENAVTALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSA 645
Query: 212 --------VETKELCIG-------------------------ALYNLSAVLDNARPMVSN 238
+E ++ IG AL+NLS +N +V +
Sbjct: 646 ATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQS 705
Query: 239 GVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQ 298
G V L+ L + +K++A L NL G+ A+ +P L+E++ + +
Sbjct: 706 GAVRYLIDLMDPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIP-LLVEVVELGSA-RGK 763
Query: 299 ELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKM 358
E +A L+ L+ S + + + G V + L+ G+P A+ +A LL +F+++R
Sbjct: 764 ENAAAALLQLSTNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQRHGNA 823
Query: 359 G 359
G
Sbjct: 824 G 824
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 147/306 (48%), Gaps = 13/306 (4%)
Query: 51 EKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLM 110
EK+V + +N ++ D+ LL V+ L EE+ + K++ LA+E+ + + L+
Sbjct: 366 EKEVSPDSQNEQK-----DEVSLL---VEALSSSQLEEQRRSVKQMRLLARENPENRVLI 417
Query: 111 AELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDE 170
A G I +LV ++S G + A+ L+ L+ NK ++ G + + + ++ +
Sbjct: 418 ANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDE-VNKKLISNEGAIPNIIEILENGNR 476
Query: 171 STRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD 230
R L SLS L + + S +P LV +L+ G ++ K+ + AL+NLS
Sbjct: 477 EARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHG-TLRGKKDALTALFNLSLNSA 535
Query: 231 NARPMVSNGVVHTLLKLCSMKER-LSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEIL 289
N + G+V LL L K + +++L+ L L G++A+ + E+L+E +
Sbjct: 536 NKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIGQLSFI-ETLVEFI 594
Query: 290 TWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQW 349
+ PK +E + +L+ L +S + G+ +++ G+ AQR+A+ L+Q
Sbjct: 595 R-QGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQRKANALIQL 653
Query: 350 FKDERQ 355
Q
Sbjct: 654 ISKSEQ 659
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 429 | ||||||
| 224076980 | 437 | predicted protein [Populus trichocarpa] | 0.955 | 0.938 | 0.686 | 1e-161 | |
| 224114690 | 425 | predicted protein [Populus trichocarpa] | 0.965 | 0.974 | 0.689 | 1e-158 | |
| 255563120 | 439 | ubiquitin-protein ligase, putative [Rici | 0.960 | 0.938 | 0.670 | 1e-154 | |
| 356555412 | 436 | PREDICTED: U-box domain-containing prote | 0.974 | 0.958 | 0.625 | 1e-143 | |
| 225443823 | 431 | PREDICTED: U-box domain-containing prote | 0.934 | 0.930 | 0.646 | 1e-143 | |
| 357446983 | 440 | U-box domain-containing protein [Medicag | 0.951 | 0.927 | 0.599 | 1e-140 | |
| 356546587 | 504 | PREDICTED: U-box domain-containing prote | 0.972 | 0.827 | 0.626 | 1e-136 | |
| 30683515 | 438 | armadillo/beta-catenin-like repeat-conta | 0.969 | 0.949 | 0.608 | 1e-134 | |
| 297826063 | 440 | binding protein [Arabidopsis lyrata subs | 0.969 | 0.945 | 0.599 | 1e-132 | |
| 449434288 | 444 | PREDICTED: U-box domain-containing prote | 0.965 | 0.932 | 0.583 | 1e-128 |
| >gi|224076980|ref|XP_002305078.1| predicted protein [Populus trichocarpa] gi|222848042|gb|EEE85589.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 291/424 (68%), Positives = 352/424 (83%), Gaps = 14/424 (3%)
Query: 7 SYMRLQFFSRIRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDI 66
SY++LQFF+R+R+F+Q+K A++ K+RT +N +E+Q I + + SDI
Sbjct: 25 SYLKLQFFARVRRFLQTKRAQK--------SNKTRTKAMVN--KEEQATITTVDRQSSDI 74
Query: 67 EEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE 126
+ DD V+LQ+SVKRLHFGSWEEKEMAA EI+KLA+ED K++ LMAELGVI LV MV++E
Sbjct: 75 D-DDSVVLQRSVKRLHFGSWEEKEMAALEIKKLAREDAKMRNLMAELGVIPALVGMVASE 133
Query: 127 VIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL 186
V GR+R A+ ALI+LANGTY NKA+MVEAGI +KLPK++D ++E TR EF EL+LSLSSL
Sbjct: 134 VAGRQRVAVNALIELANGTYKNKALMVEAGIFSKLPKSMDVLEEPTRQEFAELILSLSSL 193
Query: 187 AN-THIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLL 245
AN T PL+SSE+LPFL+GILES SS ETKE C+G LYNLSAVLDNA P++SNG V TLL
Sbjct: 194 ANHTQFPLASSEVLPFLIGILESCSSYETKESCLGTLYNLSAVLDNAGPLLSNGAVQTLL 253
Query: 246 KLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYIL 305
++ S KE SEK+LATLG+LVVT GKKAME+S LVPESLIEI+TWE+KPKCQELSAYIL
Sbjct: 254 RVISEKE-FSEKALATLGHLVVTLMGKKAMENSSLVPESLIEIMTWEDKPKCQELSAYIL 312
Query: 306 MILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQ 365
MILAHQSS RDKM KSGIV V L++ALLGSPLAQ+RA KLLQWFKDERQ +MGPHSGPQ
Sbjct: 313 MILAHQSSALRDKMLKSGIVPVLLEVALLGSPLAQKRALKLLQWFKDERQTRMGPHSGPQ 372
Query: 366 TRRVSIGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRANA-AADSSKLKSLVISTSC 424
T R++IGSPV+ RE QEGKK+MK+LV+QSL KN+E+IT+RANA + DSSK KSLVISTS
Sbjct: 373 TARIAIGSPVNNREPQEGKKLMKDLVKQSLQKNMELITQRANATSGDSSKFKSLVISTSS 432
Query: 425 KSLP 428
KSLP
Sbjct: 433 KSLP 436
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114690|ref|XP_002316829.1| predicted protein [Populus trichocarpa] gi|222859894|gb|EEE97441.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 296/429 (68%), Positives = 358/429 (83%), Gaps = 15/429 (3%)
Query: 2 SIPSSSYMRLQFFSRIRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNH 61
SI + S+M+L+FF+R+R+F+Q+K+ +R + KSR ++ +E+QV +K
Sbjct: 9 SIWALSHMKLRFFARVRRFLQTKTIQR--------NIKSRNKAMVS--KEEQVTTADKR- 57
Query: 62 EQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVS 121
D ++DD V+LQ+SVKRLHFG EEKEMAA EIE+LA+EDVK++K+MAELGVI LV
Sbjct: 58 -SGDDDDDDSVVLQRSVKRLHFGGLEEKEMAAIEIERLAREDVKMRKMMAELGVIPALVG 116
Query: 122 MVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLL 181
MV++E+ GRRR AIKALI+LANGTYTNKA+MVEAGI +KLP N+D ++E TRHEF EL+L
Sbjct: 117 MVASELAGRRRVAIKALIELANGTYTNKALMVEAGIFSKLPVNIDVLEEPTRHEFAELIL 176
Query: 182 SLSSLAN-THIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGV 240
SLSSLAN T PL+SSE+LPFL+GILESGSS ETKE C+G LYNLSAVLDN ++SNGV
Sbjct: 177 SLSSLANHTQFPLASSEVLPFLIGILESGSSCETKESCLGTLYNLSAVLDNTGALLSNGV 236
Query: 241 VHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQEL 300
V TLL+L S+K LSEK+LATLG+LVVT GKKAME+S LVPESLIEI+TWE+KPKCQEL
Sbjct: 237 VQTLLRLISVKA-LSEKALATLGHLVVTLMGKKAMENSSLVPESLIEIMTWEDKPKCQEL 295
Query: 301 SAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGP 360
SAYILMILAHQSS QR+KMAKSGIV L+LALLGSPLAQ+RA KLLQWFKDERQ +MGP
Sbjct: 296 SAYILMILAHQSSAQREKMAKSGIVPALLELALLGSPLAQKRALKLLQWFKDERQTRMGP 355
Query: 361 HSGPQTRRVSIGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRANA-AADSSKLKSLV 419
HSGPQT R++IGSPV+ EAQEGKK+MK+LV+QSLHKN+E+ITRRANA + SS LKSLV
Sbjct: 356 HSGPQTARIAIGSPVNHSEAQEGKKLMKDLVKQSLHKNMELITRRANATSGHSSMLKSLV 415
Query: 420 ISTSCKSLP 428
ISTS KSLP
Sbjct: 416 ISTSSKSLP 424
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255563120|ref|XP_002522564.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223538255|gb|EEF39864.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 291/434 (67%), Positives = 350/434 (80%), Gaps = 22/434 (5%)
Query: 6 SSYMRLQFFSRIRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSD 65
+SY +LQFF+RIR+F+QSK++++ N+P RT I+ +E +D
Sbjct: 18 ASYTKLQFFTRIRRFLQSKTSQK--NKP-------RTKILIDNNNNSGYYNKEVQQVATD 68
Query: 66 I---EEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSM 122
I +EDD V+LQ+SVK+LHFG+ E+KEMAA EI +LAKEDVK +KLMAELGVI +LV M
Sbjct: 69 IGEGDEDDSVVLQRSVKKLHFGNCEDKEMAATEIGRLAKEDVKARKLMAELGVIPVLVEM 128
Query: 123 VSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLS 182
VS+EV RRR A+KALI+LANGTYTNK +MVEAGIL+KLPK+++ +ESTRHEF EL+LS
Sbjct: 129 VSSEVPSRRRVAVKALIELANGTYTNKTLMVEAGILSKLPKDINVSEESTRHEFAELILS 188
Query: 183 LSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVH 242
LSSL NT ++SSE+LPFLVGILES SSVETK+ C+G LYNLSAVL+NA P++SNGVV
Sbjct: 189 LSSLGNTQFSITSSEVLPFLVGILESNSSVETKQSCLGTLYNLSAVLENAGPLLSNGVVQ 248
Query: 243 TLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSA 302
LL L S+KE LSEKSLATLG+LVV+ GKKAME+ VPESLIEILTWEEKPKCQELSA
Sbjct: 249 ILLSLISVKE-LSEKSLATLGHLVVSLMGKKAMENHIKVPESLIEILTWEEKPKCQELSA 307
Query: 303 YILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHS 362
YILMILA+QSS R KM KSGIV V L+++LLGSPLAQ+RA KLLQWFK+ERQ MGPHS
Sbjct: 308 YILMILAYQSSALRGKMEKSGIVPVLLEVSLLGSPLAQKRALKLLQWFKNERQ--MGPHS 365
Query: 363 GPQTRRVSIGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRA-------NAAADSSKL 415
GPQT R+++GSPVSPR +QEGKKMMKNLV+QSL+KN+EMITRRA ++ SSKL
Sbjct: 366 GPQTGRIAVGSPVSPRASQEGKKMMKNLVKQSLYKNMEMITRRANNNSNDSSSGESSSKL 425
Query: 416 KSLVISTSCKSLPY 429
KSLVISTS KSLPY
Sbjct: 426 KSLVISTSSKSLPY 439
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555412|ref|XP_003546026.1| PREDICTED: U-box domain-containing protein 7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 265/424 (62%), Positives = 341/424 (80%), Gaps = 6/424 (1%)
Query: 7 SYMRLQFFSRIRQFIQSKSARRRQNEPN-HNHEKSRTLKNINCQEEKQVIIEEKNHEQSD 65
S ++LQFF+RIR+F+QSK+ R+R + + + KSR N + + V + EK+ E
Sbjct: 18 SNIKLQFFARIRRFLQSKATRKRCDPSDRFDTAKSRVEHNNKVENLETVHVMEKHKE--- 74
Query: 66 IEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST 125
EE+ ++LQ++VK LHFGSWEEK +AAKEIEKLAKEDVK+ KL+ ELGV+ +LVSMV++
Sbjct: 75 -EEESVIMLQRTVKMLHFGSWEEKIVAAKEIEKLAKEDVKVSKLITELGVVPVLVSMVAS 133
Query: 126 EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSS 185
V RRR + ALI LA+GTYTNKA++VEAGIL+KLPK +D VDEST + E+LLSLSS
Sbjct: 134 PVASRRRVGLTALIHLADGTYTNKALIVEAGILSKLPKTIDLVDESTTSKLAEILLSLSS 193
Query: 186 LANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLL 245
LANT PL+S + +P L ILE+G S +TK C+ AL+NLS VL+NA P+VS+GVV LL
Sbjct: 194 LANTQFPLASLDFIPLLRNILETGPSFDTKSSCLCALHNLSTVLENACPLVSSGVVPILL 253
Query: 246 KLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYIL 305
+ S+KE +SEK+LATLGNL VT GKKA+E++ +VPE+ IEIL+WE+KPKCQELS YIL
Sbjct: 254 DVSSIKE-ISEKALATLGNLSVTLMGKKAIENNSMVPETFIEILSWEDKPKCQELSVYIL 312
Query: 306 MILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQ 365
MILAHQSS QR KMA++GIV V L++ LLGSPLAQ+RA KLLQWFKDERQ K+GPHSGPQ
Sbjct: 313 MILAHQSSLQRKKMAQAGIVPVLLEVVLLGSPLAQKRAMKLLQWFKDERQTKVGPHSGPQ 372
Query: 366 TRRVSIGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRANAAADSSKLKSLVISTSCK 425
T R ++GSPV+ REA+EGK++MK+LV+QSLH+N+E+I +RANAA +SS+LKSL+ISTS K
Sbjct: 373 TPRFAMGSPVNQREAKEGKRLMKSLVKQSLHRNMEIIAQRANAAGESSRLKSLIISTSSK 432
Query: 426 SLPY 429
SLPY
Sbjct: 433 SLPY 436
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443823|ref|XP_002266726.1| PREDICTED: U-box domain-containing protein 7 [Vitis vinifera] gi|297740492|emb|CBI30674.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/422 (64%), Positives = 337/422 (79%), Gaps = 21/422 (4%)
Query: 8 YMRLQFFSRIRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIE 67
Y +L+FF+RIR+F++SKS +R + + + E + +I Q E
Sbjct: 31 YPKLRFFTRIRRFLRSKSFSKRSSP--------------SARFEDETVI------QGMGE 70
Query: 68 EDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEV 127
E++ + LQ+SVKRLHFGSWEEKE+AA EI +LA+EDVK +K +AELGV+ LV+MV + V
Sbjct: 71 EEESLGLQRSVKRLHFGSWEEKEVAAMEIRRLAQEDVKTRKSLAELGVVPPLVAMVVSPV 130
Query: 128 IGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA 187
+GRRR A++ LI+LANGTYTNKA+MVEAG+L+ LP+N D +DEST HEF LLLS+S L
Sbjct: 131 VGRRRLAVQTLIELANGTYTNKALMVEAGLLSNLPQNTDTIDESTMHEFARLLLSISFLT 190
Query: 188 NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKL 247
NT PL+S+EILPFLV ILESGSS+ETKE CI LYNLSAVLDN+ P+V+ GVV +LL+L
Sbjct: 191 NTQFPLNSTEILPFLVAILESGSSIETKESCICTLYNLSAVLDNSGPLVNGGVVQSLLRL 250
Query: 248 CSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMI 307
S+KE +SEK+LATLGNLVVT GKKA+E+S LVPESLIEI+TWE+KPKCQELSAYILMI
Sbjct: 251 VSVKE-VSEKALATLGNLVVTMMGKKAVENSTLVPESLIEIMTWEDKPKCQELSAYILMI 309
Query: 308 LAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTR 367
LAHQSS QR KMAK+GIV V L++ALLGSPLAQ+R KLLQWFKDERQ +MGPHSGPQ
Sbjct: 310 LAHQSSVQRQKMAKAGIVPVMLEVALLGSPLAQKRVLKLLQWFKDERQTRMGPHSGPQAG 369
Query: 368 RVSIGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRANAAADSSKLKSLVISTSCKSL 427
R +GSP++ RE EGKK+MK +V+QSL+KN+EMITRRANAA +S LK+LVISTS KSL
Sbjct: 370 RYVMGSPMNQRETLEGKKLMKTMVKQSLNKNMEMITRRANAATAASTLKTLVISTSSKSL 429
Query: 428 PY 429
PY
Sbjct: 430 PY 431
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357446983|ref|XP_003593767.1| U-box domain-containing protein [Medicago truncatula] gi|355482815|gb|AES64018.1| U-box domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 265/442 (59%), Positives = 336/442 (76%), Gaps = 34/442 (7%)
Query: 7 SYMRLQFFSRIRQFIQSKSARRRQNEPNH-NHEKSRTLKNINCQEEKQVIIEEKNHEQSD 65
S ++LQFF+RI++F+QSK+ R+R ++ N EKSR E+ N EQ+
Sbjct: 14 SNIKLQFFTRIKRFLQSKATRKRCESSDYLNKEKSRA--------------EQSNIEQNM 59
Query: 66 IEEDDCV------------------LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIK 107
+E + V LLQK+VK LHFGSWEEKE+AAKEIE L KEDVK++
Sbjct: 60 VENIETVQVIEKHKEEEEVVEETEILLQKTVKMLHFGSWEEKEIAAKEIESLVKEDVKVR 119
Query: 108 KLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDA 167
KL+ ELGV+ +LVSMV+++V+ RRA + ALI LA+GTYTNKA++VEAGIL+KLPK +D
Sbjct: 120 KLITELGVVPVLVSMVASQVVSHRRAGLTALIYLADGTYTNKAMIVEAGILSKLPKTIDL 179
Query: 168 VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227
VDEST EF ELLLSLSSLANT P S + LP + IL+ + +TK C+GALYNLS
Sbjct: 180 VDESTISEFAELLLSLSSLANTQYPFPSLDFLPVIKDILKKDMTFDTKRSCLGALYNLST 239
Query: 228 VLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIE 287
+L+NA P+VS G+V LL+L +KE +SEK+LATLGNL+VT GKKA+E++ +VP++ +E
Sbjct: 240 MLENASPLVSYGLVPILLELSLVKE-ISEKALATLGNLLVTLMGKKAIENNSMVPQNFVE 298
Query: 288 ILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
IL+WE+KPKCQELS YILMILAHQSS QRDKMA++ IV + L++ LLGSPLAQ+RA KLL
Sbjct: 299 ILSWEDKPKCQELSVYILMILAHQSSSQRDKMAQARIVPILLEVVLLGSPLAQKRAMKLL 358
Query: 348 QWFKDERQAKMGPHSGPQTRRVSIGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRAN 407
QWFKDERQ KMGPHSGPQT R +GSP++ R+ EGKK+MK+LV+QSLHKNLE+IT+RAN
Sbjct: 359 QWFKDERQIKMGPHSGPQTPRFGMGSPLNQRDTNEGKKLMKSLVKQSLHKNLEIITQRAN 418
Query: 408 AAADSSKLKSLVISTSCKSLPY 429
A +SSKLKSLVISTS KSLPY
Sbjct: 419 ANGESSKLKSLVISTSSKSLPY 440
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546587|ref|XP_003541706.1| PREDICTED: U-box domain-containing protein 7-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 267/426 (62%), Positives = 342/426 (80%), Gaps = 9/426 (2%)
Query: 7 SYMRLQFFSRIRQFIQSKSARRRQNEPN-HNHEKSRTLKN--INCQEEKQVIIEEKNHEQ 63
S ++LQFF RIR+F+QSK+ ++R + + + KS+ N + E QV+ + K E+
Sbjct: 85 SNIKLQFFGRIRRFLQSKATKKRYDPSDRFDTAKSKVEHNNKVENLETVQVMEKHKEEEE 144
Query: 64 SDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMV 123
+ ++LQ++VK LHFGSWEEKE+AAKEIEKLAKEDVK++KL+ ELGV+ +LVSMV
Sbjct: 145 ESV-----IMLQRTVKMLHFGSWEEKEVAAKEIEKLAKEDVKVRKLITELGVVPVLVSMV 199
Query: 124 STEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSL 183
++ V RRRA + ALI LA+GTYTNKA++VEAGIL+KLPK +D VDEST + ELLLSL
Sbjct: 200 ASPVASRRRAGLTALIHLADGTYTNKALIVEAGILSKLPKTIDLVDESTTSKLVELLLSL 259
Query: 184 SSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHT 243
SSLANT PL+ + LP L ILE GSS +TK C+GAL+NLS VL+NA P+VS+GVV
Sbjct: 260 SSLANTQFPLAILDFLPLLRNILEKGSSFDTKNSCLGALHNLSTVLENACPLVSSGVVPI 319
Query: 244 LLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303
LL++ S+KE +SEK+LATLGNL VT GKK +E++ +VPE+ IEIL+WE+KPKCQELS Y
Sbjct: 320 LLEVSSIKE-ISEKALATLGNLSVTLMGKKTIENNSMVPETFIEILSWEDKPKCQELSVY 378
Query: 304 ILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSG 363
ILMILAHQSS QR KMA++GIV V L++ LLGS LAQ+RA KLLQWFKDERQ KMGPHSG
Sbjct: 379 ILMILAHQSSLQRKKMAQAGIVPVLLEVVLLGSNLAQKRAMKLLQWFKDERQTKMGPHSG 438
Query: 364 PQTRRVSIGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRANAAADSSKLKSLVISTS 423
PQT R ++GSPV+ REA+EGK++MK+LV+QSL++N+E+IT+RANAA +SSKLKSL+ISTS
Sbjct: 439 PQTPRFAMGSPVNQREAKEGKRLMKSLVKQSLNRNMEIITQRANAAGESSKLKSLIISTS 498
Query: 424 CKSLPY 429
KSLPY
Sbjct: 499 SKSLPY 504
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30683515|ref|NP_180312.2| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|27413513|gb|AAO11674.1| hypothetical protein [Arabidopsis thaliana] gi|61742614|gb|AAX55128.1| hypothetical protein At2g27430 [Arabidopsis thaliana] gi|330252902|gb|AEC07996.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 260/427 (60%), Positives = 335/427 (78%), Gaps = 11/427 (2%)
Query: 8 YMRLQFFSRIRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIE 67
YM+L FF++IR ++SK++ R+ N EKSRT ++ EK + E+ + +
Sbjct: 18 YMKLNFFTKIRCLLKSKASFRKSN-LQALPEKSRTYQDF----EKVAALPEEIVSKPPED 72
Query: 68 EDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEV 127
E++ V+LQK+VK++HFGSWEEKE AA EIEKLA+ED K +KLMAELGVIQ+LVSMV+++V
Sbjct: 73 ENEEVVLQKTVKKIHFGSWEEKEKAAIEIEKLAREDKKTRKLMAELGVIQILVSMVASDV 132
Query: 128 IGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA 187
G ++AA+ ALIQL++GTYTNKA+MV A I +KLPKNV+ +D+STRH F ELLLSLSSL
Sbjct: 133 SGHQKAAVNALIQLSHGTYTNKALMVNADICSKLPKNVEVLDQSTRHAFAELLLSLSSLT 192
Query: 188 NTHIPLSSSEILPFLVGILESGSS-VETKELCIGALYNLSAVLDNARPMVSNGVVHTLLK 246
NT +P++SS+ILPFL+ + S S+ ++TKE+C+ + NL VL+NA P+V NG V TLL
Sbjct: 193 NTQLPVASSQILPFLMDTMNSDSTDMKTKEICLATISNLCLVLENAGPLVLNGAVETLLS 252
Query: 247 LCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306
L S K+ LSEK+LA+LG LVVT GKKAMED LV + LIEILTWE+ PKCQE +AYILM
Sbjct: 253 LMSTKD-LSEKALASLGKLVVTQMGKKAMEDCLLVSKGLIEILTWEDIPKCQEYAAYILM 311
Query: 307 ILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQT 366
+LAHQS QR+KMAK+GIV V L+++LLGSPL Q+RA KLLQWFKDER +MGPHSGPQT
Sbjct: 312 VLAHQSWSQREKMAKAGIVPVLLEVSLLGSPLVQKRAVKLLQWFKDERNVRMGPHSGPQT 371
Query: 367 RRVS--IGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRAN--AAADSSKLKSLVIST 422
VS +GSP+SPR +EG+KMMKNLV+QSL+KN+EMITRR N ++S +LKSL+IST
Sbjct: 372 GWVSPGMGSPMSPRSGEEGRKMMKNLVKQSLYKNMEMITRRGNLDMESESCRLKSLIIST 431
Query: 423 SCKSLPY 429
S KSL Y
Sbjct: 432 SSKSLTY 438
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297826063|ref|XP_002880914.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297326753|gb|EFH57173.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 256/427 (59%), Positives = 333/427 (77%), Gaps = 11/427 (2%)
Query: 8 YMRLQFFSRIRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIE 67
YM+L FF++IR ++SK++ R++N EKSRT ++ EK + E + +
Sbjct: 20 YMKLHFFTKIRCLLKSKASSRKRN-LQALPEKSRTYQD----SEKVAALPEAIVLKLPED 74
Query: 68 EDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEV 127
E++ V+LQK+VK+LHFGSWEEKE AA EIEKLA+ED K +KLMAELGV+Q+LV MV+++V
Sbjct: 75 ENEEVVLQKTVKKLHFGSWEEKEKAAIEIEKLAREDKKTRKLMAELGVLQVLVYMVASDV 134
Query: 128 IGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA 187
G ++AA+ ALIQL++GTY NKA+MV A I +KLPKNV+ +D+STRH F ELLLSLSSL
Sbjct: 135 SGHQKAAVNALIQLSHGTYKNKALMVNADICSKLPKNVEVLDQSTRHGFAELLLSLSSLT 194
Query: 188 NTHIPLSSSEILPFLVGILESGSS-VETKELCIGALYNLSAVLDNARPMVSNGVVHTLLK 246
NT +P++SS+ILPFL+ + S S+ ++ KE+C+ + NL VL+NA P+V NG V TLL+
Sbjct: 195 NTQLPVASSQILPFLMDTMNSDSTDMKIKEICLATISNLCLVLENAGPLVLNGAVQTLLR 254
Query: 247 LCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306
L S K+ LSEK+LA+LG LVVT GKKAMED +VP+ LIEILTWE+KPKCQE S YILM
Sbjct: 255 LMSAKD-LSEKALASLGQLVVTQMGKKAMEDCLIVPKGLIEILTWEDKPKCQEYSVYILM 313
Query: 307 ILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQT 366
+LAHQS QR+KM K+GIV V L+++LLGSPL Q+RA KLLQWFKDER +MGPHSGPQT
Sbjct: 314 VLAHQSWSQREKMTKAGIVPVLLEVSLLGSPLVQKRAVKLLQWFKDERNVRMGPHSGPQT 373
Query: 367 RRVS--IGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRANA--AADSSKLKSLVIST 422
+S +GSP+SPR +EG+KMMKNLV+QSL+KN+EMITRR N ++S +LKSL+IST
Sbjct: 374 GWMSPGMGSPMSPRSGEEGRKMMKNLVKQSLYKNMEMITRRGNVDMESESCRLKSLIIST 433
Query: 423 SCKSLPY 429
S KSL Y
Sbjct: 434 SSKSLTY 440
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434288|ref|XP_004134928.1| PREDICTED: U-box domain-containing protein 7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 251/430 (58%), Positives = 331/430 (76%), Gaps = 16/430 (3%)
Query: 7 SYMRLQFFSRIRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHE-QSD 65
SY++L+FF+RIR+F++SK+ P + ++ N+ + + + + S
Sbjct: 24 SYIKLRFFNRIRRFLRSKT-------PKKPYVSTKDSINVTPTGNEVMQVAGAGWDCNSR 76
Query: 66 IE---EDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSM 122
IE + L+ +VK+LHFGSWEEKEMAAK IEK++KEDV++K LM +L V+ LV M
Sbjct: 77 IEGGADVSAAALRMTVKKLHFGSWEEKEMAAKMIEKMSKEDVEVKNLMVDLRVVPALVLM 136
Query: 123 VSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLS 182
V+++ +GR A+KAL++LA G++ NKA+MVEAGIL KLP N+ A+DES +H+F LLLS
Sbjct: 137 VASDAVGRPEVAVKALLELAKGSFENKALMVEAGILHKLPSNIQAMDESAKHDFARLLLS 196
Query: 183 LSSLANTH--IPLSSSE-ILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNG 239
LSSL N+H I L ++E +PFLV IL+S S+ ET++ C+ LYN+S VL+N P+VSNG
Sbjct: 197 LSSLINSHFTIALQTNERGIPFLVDILDSTSNFETQKCCLETLYNISTVLENVGPLVSNG 256
Query: 240 VVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQE 299
VVH LLK+ S K LS+++LA LGNLVVTS GK+ ME S +VP+SLI+I+TWE+KPK E
Sbjct: 257 VVHILLKMSSSKG-LSDRALAALGNLVVTSQGKREMESSQMVPDSLIKIMTWEDKPKSTE 315
Query: 300 LSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMG 359
LSAYILM+LAHQSSEQR+KMAKSGIV V L++ALLGSPLAQ+RA KLLQWFK+E+QAKM
Sbjct: 316 LSAYILMMLAHQSSEQREKMAKSGIVAVLLEVALLGSPLAQKRALKLLQWFKNEKQAKMD 375
Query: 360 PHSGPQTRRVSIGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRANAAADSSKLKSLV 419
PHSGPQT R+ IGSPV+ RE QEG+KMMKNLV+QSL+KN+E+IT RA +A D +KLK+LV
Sbjct: 376 PHSGPQTGRIVIGSPVNQREVQEGRKMMKNLVKQSLYKNMELITGRA-SAGDPAKLKNLV 434
Query: 420 ISTSCKSLPY 429
ISTS KSLP+
Sbjct: 435 ISTSSKSLPF 444
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 429 | ||||||
| TAIR|locus:2038598 | 438 | AT2G27430 "AT2G27430" [Arabido | 0.983 | 0.963 | 0.554 | 7.1e-116 | |
| TAIR|locus:2116792 | 518 | AT4G31890 "AT4G31890" [Arabido | 0.750 | 0.621 | 0.331 | 4.5e-38 | |
| TAIR|locus:2040214 | 468 | AT2G25130 [Arabidopsis thalian | 0.708 | 0.649 | 0.331 | 8.5e-33 | |
| TAIR|locus:2008813 | 782 | AT1G67530 [Arabidopsis thalian | 0.701 | 0.384 | 0.257 | 1.5e-15 | |
| TAIR|locus:2010424 | 768 | PUB45 "plant U-box 45" [Arabid | 0.668 | 0.373 | 0.266 | 5.4e-15 | |
| TAIR|locus:2135788 | 402 | AT4G12710 [Arabidopsis thalian | 0.703 | 0.751 | 0.250 | 7.1e-13 | |
| TAIR|locus:2032472 | 771 | AT1G24330 [Arabidopsis thalian | 0.631 | 0.351 | 0.248 | 9.5e-12 | |
| TAIR|locus:2099634 | 408 | AT3G03440 "AT3G03440" [Arabido | 0.662 | 0.696 | 0.241 | 2.2e-11 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.547 | 0.383 | 0.263 | 3.9e-11 | |
| TAIR|locus:2013990 | 628 | AT1G71020 [Arabidopsis thalian | 0.573 | 0.391 | 0.255 | 5.3e-11 |
| TAIR|locus:2038598 AT2G27430 "AT2G27430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
Identities = 240/433 (55%), Positives = 315/433 (72%)
Query: 2 SIPSSSYMRLQFFSRIRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNH 61
S+ YM+L FF++IR ++SK++ R+ N EKSRT ++ EK + E+
Sbjct: 12 SVWQLQYMKLNFFTKIRCLLKSKASFRKSNL-QALPEKSRTYQDF----EKVAALPEEIV 66
Query: 62 EQSDIEEDDCVLLQKSVKRLHFGSWXXXXXXXXXXXXXXXXDVKIKKLMAELGVIQMLVS 121
+ +E++ V+LQK+VK++HFGSW D K +KLMAELGVIQ+LVS
Sbjct: 67 SKPPEDENEEVVLQKTVKKIHFGSWEEKEKAAIEIEKLAREDKKTRKLMAELGVIQILVS 126
Query: 122 MVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGEXXX 181
MV+++V G ++AA+ ALIQL++GTYTNKA+MV A I +KLPKNV+ +D+STRH F E
Sbjct: 127 MVASDVSGHQKAAVNALIQLSHGTYTNKALMVNADICSKLPKNVEVLDQSTRHAFAELLL 186
Query: 182 XXXXXANTHIPLSSSEILPFLVGILESGSS-VETKELCIGALYNLSAVLDNARPMVSNGV 240
NT +P++SS+ILPFL+ + S S+ ++TKE+C+ + NL VL+NA P+V NG
Sbjct: 187 SLSSLTNTQLPVASSQILPFLMDTMNSDSTDMKTKEICLATISNLCLVLENAGPLVLNGA 246
Query: 241 VHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQEL 300
V TLL L S K+ LSEK+LA+LG LVVT GKKAMED LV + LIEILTWE+ PKCQE
Sbjct: 247 VETLLSLMSTKD-LSEKALASLGKLVVTQMGKKAMEDCLLVSKGLIEILTWEDIPKCQEY 305
Query: 301 SAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGP 360
+AYILM+LAHQS QR+KMAK+GIV V L+++LLGSPL Q+RA KLLQWFKDER +MGP
Sbjct: 306 AAYILMVLAHQSWSQREKMAKAGIVPVLLEVSLLGSPLVQKRAVKLLQWFKDERNVRMGP 365
Query: 361 HSGPQTRRVS--IGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRANA--AADSSKLK 416
HSGPQT VS +GSP+SPR +EG+KMMKNLV+QSL+KN+EMITRR N ++S +LK
Sbjct: 366 HSGPQTGWVSPGMGSPMSPRSGEEGRKMMKNLVKQSLYKNMEMITRRGNLDMESESCRLK 425
Query: 417 SLVISTSCKSLPY 429
SL+ISTS KSL Y
Sbjct: 426 SLIISTSSKSLTY 438
|
|
| TAIR|locus:2116792 AT4G31890 "AT4G31890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
Identities = 116/350 (33%), Positives = 187/350 (53%)
Query: 103 DVKIKKLMAELGVIQMLVSMVS-TEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKL 161
D + + +A LG I LVSM+ + ++ + A++ AL+ L G NKA +V+AG + K+
Sbjct: 174 DSEARVTLAMLGAIPPLVSMIDDSRIVDAQIASLYALLNLGIGNDANKAAIVKAGAVHKM 233
Query: 162 PKNVDAVDESTRHEFGEXXXXXX---XXANTHIPL-SSSEILPFLVGILES---GSSVET 214
K +++ + + E E +++ P+ SS + FLV L++ SS +
Sbjct: 234 LKLIESPNTPDQ-EIAEAVVANFLGLSALDSNKPIIGSSGAIIFLVKTLQNLDETSSSQA 292
Query: 215 KELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKA 274
+E + ALYNLS N ++ ++ LL E +SE+ LA L NLV G+KA
Sbjct: 293 REDALRALYNLSIYQPNVSFILETDLITYLLNTLGDME-VSERILAILSNLVAVPEGRKA 351
Query: 275 MEDSPLVPES---LIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQL 331
+ LV ++ L+++L W + P CQE + YILM++AH+ R M ++GI L+L
Sbjct: 352 IG---LVCDAFPVLVDVLNWTDSPGCQEKATYILMLMAHKGYGDRQVMIEAGIESALLEL 408
Query: 332 ALLGSPLAQRRASKLLQWFKDERQAKM-------GPHSGP--QTRRVSIGSPVSPREAQE 382
LLGS LAQ+RAS++L+ + ++ ++ G S P TR + + E
Sbjct: 409 TLLGSALAQKRASRILECLRVDKGKQVLDSTGSCGALSAPIYGTRDNGLDHEENDLMMSE 468
Query: 383 GKKMMKNLVQQSLHKNLEMITRRANAAAD---SSKLKSLVISTSCKSLPY 429
+K +K LVQQSL N++ I +RAN D S KSL +S++ KSLP+
Sbjct: 469 ERKAVKQLVQQSLQSNMKRIVKRANLPQDFVPSEHFKSLSLSSTSKSLPF 518
|
|
| TAIR|locus:2040214 AT2G25130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 106/320 (33%), Positives = 167/320 (52%)
Query: 103 DVKIKKLMAELGVIQMLVSMVSTEVIGRRR--AAIKALIQLANGTYTNKAIMVEAGILTK 160
D++ + +A LG I LVSM+ E A++ AL+ L G NKA +V+AG++ K
Sbjct: 140 DIEARVTLAMLGAIPPLVSMIDDESQSEDALIASLYALLNLGIGNDVNKAAIVKAGVVHK 199
Query: 161 LPKNVDAVDESTRHEFGEXXXXXX---XXANTHIPL-SSSEILPFLVGIL---ESGSSVE 213
+ K V++ + E +++ P+ SS + FLV L E SS +
Sbjct: 200 MLKLVES-SKPPNQAIAEAIVANFLGLSALDSNKPIIGSSGAIIFLVKTLKNFEETSSSQ 258
Query: 214 TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKK 273
+E + ALYNLS N ++ ++ LL E +SE+ LA L N+V G+K
Sbjct: 259 AREDALRALYNLSIYHQNVSFILETDLIPFLLNTLGDME-VSERILAILTNVVSVPEGRK 317
Query: 274 AMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL 333
A+ + L+++L W + KCQE + YILM++AH+ R+ M ++GI L+L L
Sbjct: 318 AIGEVVEAFPILVDVLNWNDSIKCQEKAVYILMLMAHKGYGDRNAMIEAGIESSLLELTL 377
Query: 334 LGSPLAQRRASKLLQWFK--DERQAKMGPHSGPQTRRVSIGSPVSPREAQEGKKMMKNLV 391
+GSPLAQ+RAS++L+ + D+ + P G + G + R E +K +K LV
Sbjct: 378 VGSPLAQKRASRVLECLRVVDKGKQVSAPIYGTSSLGRERGHDL--RMTDE-RKAVKQLV 434
Query: 392 QQSLHKNLEMITRRANAAAD 411
QQSL N++ I +RAN D
Sbjct: 435 QQSLQSNMKRIVKRANLPHD 454
|
|
| TAIR|locus:2008813 AT1G67530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 217 (81.4 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 82/319 (25%), Positives = 145/319 (45%)
Query: 103 DVKIKKLMAELGVIQMLVSMVSTEVIGRRRAA----IKALIQLANGTYTNKAIMVEAGIL 158
D + + M G ++ L+ + + V AA AL LA NK +M+ +G++
Sbjct: 455 DEEARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMALFNLAVNNNRNKELMLTSGVI 514
Query: 159 TKLPKNVDAVDESTRHEFGEXXXXXXXXANTHIPLSSSEILPFLVGILESGSSVETKELC 218
L K + + + A + I SS+ +PFLV +L+ + K
Sbjct: 515 RLLEKMISSAESHGSATALYLNLSCLDEAKSVI--GSSQAVPFLVQLLQKEIETQCKLDA 572
Query: 219 IGALYNLSAVLDNARPMVSNGVVHTLLKL-CSMKERL-SEKSLATLGNLVVTSTGKKAME 276
+ ALYNLS N ++S+ ++ +L L S E L EKSLA L NL + GK
Sbjct: 573 LHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENLWIEKSLAVLLNLASSQEGKDEAV 632
Query: 277 DSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGS 336
S + SL +L + + QE + L+IL + + + G++ + +++ G+
Sbjct: 633 SSQGMISSLATVLDMGDTTE-QEQAVSCLLILCNGRESCIQMVLQEGVIPSLVSISVNGT 691
Query: 337 PLAQRRASKLLQWFKDERQAKMGPHSG----PQTR--RVSIGSPVSPREAQEGKKMMKNL 390
P + ++ KLL F++ERQ + P S PQ R S+ +P+S + +++
Sbjct: 692 PRGREKSQKLLMLFREERQQRDQPSSNRDEPPQKEPARKSLSAPLSVHGSTPASASVQDY 751
Query: 391 VQQSLHKNLEMITRRANAA 409
+ L K++ +RR + A
Sbjct: 752 EPRVLSKSM---SRRKSMA 767
|
|
| TAIR|locus:2010424 PUB45 "plant U-box 45" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 81/304 (26%), Positives = 143/304 (47%)
Query: 103 DVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIK----ALIQLANGTYTNKAIMVEAGIL 158
D + + LM E G ++ L+ + + + +A K AL LA NK +M+ +GI+
Sbjct: 453 DEEARILMGENGCVEALLQFLGSALNENNASAQKVGAMALFNLAVDNNRNKELMLASGII 512
Query: 159 TKLPKNVDAVDESTRHEFGEXXXXXXXXA--NTHIP-LSSSEILPFLVGILESGSSVETK 215
L + + H G + P + SS +PF+V +L + + V+ K
Sbjct: 513 PLLEEML-----CNPHSHGSVTAIYLNLSCLEEAKPVIGSSLAVPFMVNLLWTETEVQCK 567
Query: 216 ELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKERLSEKSLATLGNLVVTSTGKKA 274
+ +L++LS N ++S +V+ L L S ++R +EKSLA L NLV+ GK
Sbjct: 568 VDALHSLFHLSTYPPNIPCLLSADLVNALQSLTISDEQRWTEKSLAVLLNLVLNEAGKDE 627
Query: 275 MEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL 334
M +P + +L IL E P QE + +L+IL + S + + + G++ + +++
Sbjct: 628 MVSAPSLVSNLCTILDTGE-PNEQEQAVSLLLILCNHSEICSEMVLQEGVIPSLVSISVN 686
Query: 335 GSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRRVSI---GSPVSPREAQEGKKMMKNLV 391
G+ + RA KLL F++ RQ + PQ V+ G V+ E K K+
Sbjct: 687 GTQRGRERAQKLLTLFRELRQRDQTHLTEPQHTEVTSPEDGFSVASAAVTETKPQCKSAS 746
Query: 392 QQSL 395
++ +
Sbjct: 747 RKKM 750
|
|
| TAIR|locus:2135788 AT4G12710 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 80/319 (25%), Positives = 155/319 (48%)
Query: 110 MAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD 169
+A+ GVI LV M+ + + R A++ AL+ LA NK +V+AG + L + + +
Sbjct: 86 LADAGVIPPLVPMLFSSNVDARHASLLALLNLAVRNERNKIEIVKAGAVPPLIQILKLHN 145
Query: 170 ESTRHEFGEXXXXXXXXANTH-IPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228
S R E A + + SS + P L+ +L SG+ V+ K + AL+NLSA
Sbjct: 146 ASLR-ELATAAILTLSAAPANKAMIISSGVPPLLIQMLSSGT-VQGKVDAVTALHNLSAC 203
Query: 229 LDNARPMVSNGVVHTL---LKLCSMKERLSEKSLATLGNLVVTST-GKKAM---EDSPLV 281
+ + P++ V+ L LK C + +EK+ A + ++ S G+ A+ ED L
Sbjct: 204 KEYSAPILDAKAVYPLIHLLKECKKHSKFAEKATALVEMILSHSEDGRNAITSCEDGIL- 262
Query: 282 PESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMA-KSGIVHVSLQLALLGSPLAQ 340
+L+E + + P E + L+ L ++ K+ K G + L + G+ ++
Sbjct: 263 --TLVETVE-DGSPLSIEHAVGALLSLCRSDRDKYRKLILKEGAIPGLLSSTVDGTSKSR 319
Query: 341 RRASKLLQWFKDE-RQAKMGPHSGPQ-TRRVSIGSPVSPREAQEGKKMMKNLVQQSLHKN 398
RA LL ++ R+ +M P + + +++ + + A+ KK+++++V +S+ +
Sbjct: 320 DRARVLLDLLRETPREKEMTPLTLEKIVYGIAVQVDGAEKAAETAKKLLQDMVHRSMELS 379
Query: 399 LEMITRRANAAADSSKLKS 417
++ I +A + A + S
Sbjct: 380 MKSIQHKAASCASIPDISS 398
|
|
| TAIR|locus:2032472 AT1G24330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 70/282 (24%), Positives = 126/282 (44%)
Query: 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHE 175
+Q L S V + AL LA NK +M+ +G++ L K + ++
Sbjct: 472 LQFLESAVHDNNAAAQETGAMALFNLAVNNNRNKELMLTSGVIPLLEKMISC--SQSQGP 529
Query: 176 FGEXXXXXXXXANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPM 235
+ SS+ + F V +L + + K + ALYNLS N +
Sbjct: 530 ATALYLNLSCLEKAKPVIGSSQAVSFFVNLLLQDTKTQCKLDALHALYNLSTYSPNIPTL 589
Query: 236 VSNGVVHTLLKLCSMKERL-SEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEK 294
+S+ ++ +L L S L EKSLA L NL + GK+ M + + +L +L +
Sbjct: 590 LSSNIIKSLQVLASTGNHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGDT 649
Query: 295 PKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354
+ QE + L+IL S + + G++ + +++ GSP + ++ KLL F+++R
Sbjct: 650 VE-QEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQR 708
Query: 355 QAKM-GPHSGPQTRR-----VSIGSPVSPREAQEGKKMMKNL 390
P+ R+ ++I +PVS E+ E K + K++
Sbjct: 709 HRDQPSPNKEEAPRKTVSAPMAIPAPVSAPES-EVKPLTKSI 749
|
|
| TAIR|locus:2099634 AT3G03440 "AT3G03440" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 74/306 (24%), Positives = 144/306 (47%)
Query: 116 IQMLVSMVSTEVI-GRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRH 174
++ LVSM+ + AA+ AL+ LA NK ++EAG L + + + + T
Sbjct: 106 VEPLVSMLRFDSPESHHEAALLALLNLAVKDEKNKVSIIEAGALEPIINFLQS-NSPTLQ 164
Query: 175 EFGEXXXXXXXXANTHIPL-SSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNAR 233
E+ + + P+ ++ ++P LV +++ GS + K + AL NLS + DN
Sbjct: 165 EYASASLLTLSASANNKPIIGANGVVPLLVKVIKHGSP-QAKADAVMALSNLSTLPDNLS 223
Query: 234 PMVSN---GVVHTLLKLCSMKERLSEKSLATLGNLVVTS----TGKKAMEDSPLVPESLI 286
+++ + LLK + SEK + + L+V+ TG + E L +++
Sbjct: 224 MILATKPLSPILNLLKSSKKSSKTSEKCCSLIEALMVSGEEARTGLVSDEGGVL---AVV 280
Query: 287 EILTWEEKPKCQELSAYILMILAHQS-SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASK 345
E+L + +E + +L+ L S+ R+ + + G++ L+L + G+ ++ +A +
Sbjct: 281 EVLE-NGSLQAREHAVGVLLTLCQSDRSKYREPILREGVIPGLLELTVQGTSKSRIKAQR 339
Query: 346 LLQWFKDERQAKMGPHSGPQTRRVSIGSPVSPREA--QEGK--KMMKNLVQQSLHKNLEM 401
LL ++ + P T + S +S + Q GK KM+ +VQ S+ K+L
Sbjct: 340 LLCLLRNSESPRSEVQ--PDTIENIVSSLISHIDGDDQSGKAKKMLAEMVQVSMEKSLRH 397
Query: 402 ITRRAN 407
+ RA+
Sbjct: 398 LQERAS 403
|
|
| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 184 (69.8 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 64/243 (26%), Positives = 119/243 (48%)
Query: 109 LMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTY-TNKAIMVEAGILTKLPKNVDA 167
L+AE G I +LV+++++E + + AI ++ L+ Y NK +++ AG +T + + + A
Sbjct: 368 LIAEAGAIPVLVNLLTSEDVATQENAITCVLNLS--IYENNKELIMFAGAVTSIVQVLRA 425
Query: 168 VDESTRHEFGEXXXXXXXXANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227
R I + S +P LV +LE+G+ K+ AL+NL
Sbjct: 426 GTMEARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAAT-ALFNLCI 484
Query: 228 VLDNARPMVSNGVVHTLLKLCS--MKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESL 285
N V G+V L+K+ S + R+ +++L L L K A+ + +P +L
Sbjct: 485 YHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLP-AL 543
Query: 286 IEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASK 345
I IL ++ + +E +A IL+ L + +E+ + + G V + L+ G+ +R+A
Sbjct: 544 IGILQTDQT-RNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAIS 602
Query: 346 LLQ 348
LL+
Sbjct: 603 LLE 605
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| TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 5.3e-11, P = 5.3e-11
Identities = 65/254 (25%), Positives = 126/254 (49%)
Query: 109 LMAELGVIQMLVSMVSTEV-IGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDA 167
L+AE G I +LV +++++ + A+ ++ L+ + NK +++ AG +T + + A
Sbjct: 378 LIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYEH-NKELIMLAGAVTSIVLVLRA 436
Query: 168 VDESTRHEFGEXXXXXXXXANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227
R I + +S + LV +L+ GS V K+ AL+NL
Sbjct: 437 GSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGS-VRGKKDAATALFNLCI 495
Query: 228 VLDNARPMVSNGVVHTLLKLC--SMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESL 285
N V G+V L+K+ S ER+++++L L L K A+ + +P L
Sbjct: 496 YQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTAILRANAIPP-L 554
Query: 286 IEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASK 345
I+ L +++P+ +E +A IL+ L + +E+ + + G V ++L+ G+ A+R+A+
Sbjct: 555 IDCLQ-KDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKANS 613
Query: 346 LLQWFKDERQAKMG 359
LL+ + + K+G
Sbjct: 614 LLELLRKSSR-KLG 626
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00040404 | hypothetical protein (437 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 429 | |||
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-05 | |
| pfam05536 | 542 | pfam05536, Neurochondrin, Neurochondrin | 8e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-04 | |
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.002 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-05
Identities = 38/160 (23%), Positives = 60/160 (37%), Gaps = 44/160 (27%)
Query: 109 LMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAV 168
+ + G + LVS++S+ +R A AL L+ G N +VEAG
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAG------------ 49
Query: 169 DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228
LP LV +L+S E + + AL NL+A
Sbjct: 50 -----------------------------GLPALVQLLKS-EDEEVVKAALWALRNLAAG 79
Query: 229 LDNARPMV-SNGVVHTLLKLC-SMKERLSEKSLATLGNLV 266
++ + +V G V L+ L S E + + + L NL
Sbjct: 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-05
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 196 SEILPFLVGILESGSSVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLC-SMKER 253
+ LP LV +L S +E AL NLSA DN + +V G + L++L S E
Sbjct: 6 AGGLPALVSLLSSSDENVQREAA-WALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64
Query: 254 LSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEIL 289
+ + +L L NL K + L+ +L
Sbjct: 65 VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL 100
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|218626 pfam05536, Neurochondrin, Neurochondrin | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 11/193 (5%)
Query: 158 LTKLPKNVDAVDESTRHEFGELLLS-LSSLANTHIPLSSSEIL---PFLVGILESGSSVE 213
L +L RH + +L ++ L+ + S+++ P L+ L S +
Sbjct: 55 LDRLLLTGSGPSGCPRHVYLDLGVTILACFCSEPELARHSQVVNRIPTLLECLLKSSDLS 114
Query: 214 TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKK 273
E C L ++A A+ +++ G V L + S E++L L L+ K
Sbjct: 115 MVEDCYECLSAIAATPRGAKALLALGAVPALCQAYSNGSFGLEQALHLLLLLLSALDSKS 174
Query: 274 AMEDSP---LVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQ 330
E V L E+ E + EL +L L +S + ++ I LQ
Sbjct: 175 WTEKDLDLTAVLTRLAELFQVLEGTRKFEL-LDLLPDLLPRSEPILLRSSQGEIWLRQLQ 233
Query: 331 L---ALLGSPLAQ 340
A+L S L
Sbjct: 234 KGLAAILSSKLTP 246
|
This family contains several eukaryotic neurochondrin proteins. Neurochondrin induces hydroxyapatite resorptive activity in bone marrow cells resistant to bafilomycin A1, an inhibitor of macrophage- and osteoclast-mediated resorption. Expression of the gene is localised to chondrocyte, osteoblast, and osteocyte in the bone and to the hippocampus and Purkinje cell layer of cerebellum in the brain. Length = 542 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 31/116 (26%), Positives = 52/116 (44%)
Query: 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIG 129
L V L + AA + L+ + + + E G + LV ++ +E
Sbjct: 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64
Query: 130 RRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSS 185
+AA+ AL LA G NK I++EAG + KL +D+ +E + L +L+S
Sbjct: 65 VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 31/96 (32%), Positives = 37/96 (38%), Gaps = 22/96 (22%)
Query: 134 AIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL 193
A+ L QLA G+ NK M EAG L L K LSL +T
Sbjct: 1168 ALGLLTQLAEGSDVNKLAMAEAGALDALTK----------------YLSLGPQDSTEEAA 1211
Query: 194 SSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229
S L+ IL S + E GA+ L AVL
Sbjct: 1212 SE------LLRILFSSPELRRHESAFGAVNQLVAVL 1241
|
Length = 2102 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 429 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.97 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.97 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.95 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.95 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.95 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.94 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.87 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.85 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.84 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.8 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.71 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.6 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.57 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.46 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.45 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.34 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.34 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.32 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.3 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.28 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.27 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.22 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.19 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.11 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.03 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.93 | |
| PF04564 | 73 | U-box: U-box domain; InterPro: IPR003613 Quality c | 98.89 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.86 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.83 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 98.8 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.79 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.77 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.73 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.61 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.58 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.5 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.49 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.48 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.46 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.38 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 98.32 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.28 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.28 | |
| smart00504 | 63 | Ubox Modified RING finger domain. Modified RING fi | 98.1 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 98.07 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 98.05 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 98.04 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 98.03 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.0 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.94 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.91 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.88 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.88 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.85 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.84 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.83 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.81 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.75 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.73 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.73 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.6 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.52 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.49 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 97.46 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.43 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.38 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 97.37 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.37 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.36 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.35 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 97.33 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.33 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.31 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.14 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.98 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 96.97 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.93 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.9 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.87 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.86 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.86 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.83 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.77 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.77 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.75 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.67 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 96.58 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.5 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 96.49 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 96.35 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 96.33 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 96.22 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.18 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 96.15 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 96.06 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 96.02 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 95.98 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 95.98 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.95 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.47 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 95.44 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 95.34 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 95.3 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 95.22 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 95.08 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 95.07 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.02 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 94.86 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 94.82 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 94.77 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 94.49 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 94.47 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 94.41 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 94.4 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.34 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 94.28 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 94.23 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 94.0 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 93.98 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 93.81 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 93.8 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 93.71 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 93.67 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 93.6 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 93.6 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 93.49 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 93.41 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 93.38 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 93.21 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 93.13 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 92.93 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 92.91 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 92.89 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 92.88 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 92.71 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 92.5 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 92.37 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 91.73 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 91.64 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 91.47 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 91.45 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 91.08 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 90.8 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 90.3 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 90.29 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 90.25 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 90.05 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 89.77 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 89.36 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 89.21 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 89.03 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 88.99 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 88.86 | |
| KOG2999 | 713 | consensus Regulator of Rac1, required for phagocyt | 88.83 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 88.42 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 88.19 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 87.94 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 87.44 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 87.19 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 87.12 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 87.0 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 86.63 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 85.54 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 85.22 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 85.1 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 84.6 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 84.48 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 84.46 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 84.13 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 83.42 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 83.4 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 83.29 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 83.06 | |
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 82.61 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 82.31 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 82.14 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 82.09 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 81.88 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 81.27 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 81.22 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 81.12 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 80.72 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 80.03 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=287.05 Aligned_cols=282 Identities=20% Similarity=0.234 Sum_probs=249.1
Q ss_pred hHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCC
Q 014196 70 DCVLLQKSVKRLHFG--SWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTY 146 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~--~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 146 (429)
....+..+|+.|.++ +++.|..|+..|+.++++++++|..+++ .|+||.||.+|.+++..+|+.|+.+|.+|+.++
T Consensus 11 ~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e- 89 (2102)
T PLN03200 11 TLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEE- 89 (2102)
T ss_pred hHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH-
Confidence 466789999999977 7899999999999999999999999997 899999999999999999999999999999996
Q ss_pred chHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC---CCcccc-ccCCcHHHHHHhhhcCCcH--HHHHHHHH
Q 014196 147 TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA---NTHIPL-SSSEILPFLVGILESGSSV--ETKELCIG 220 (429)
Q Consensus 147 ~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~---~~~~~i-~~~g~i~~Lv~lL~~~~~~--~~~~~A~~ 220 (429)
+|+..|+..|+||+|+.+|++++.+.|+.|+.+|++|+.+. .++..| ...|+||+|+.++++++.. .+++.++.
T Consensus 90 ~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~ 169 (2102)
T PLN03200 90 DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTG 169 (2102)
T ss_pred HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHH
Confidence 69999999999999999999999999999999999999874 344444 4799999999999997421 25677889
Q ss_pred HHHHhccCCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhH
Q 014196 221 ALYNLSAVLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKC 297 (429)
Q Consensus 221 aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~ 297 (429)
+|+|||.+++|+ ..++++|+||.|+.+|++.+ ..++.|+.+|.+++. +++++..+++.|+++ .||++|+...++..
T Consensus 170 AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP-~LV~LL~sg~~~~V 248 (2102)
T PLN03200 170 ALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVK-QLLKLLGQGNEVSV 248 (2102)
T ss_pred HHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH-HHHHHHccCCChHH
Confidence 999999999998 45789999999999998765 889999999988886 578999999988875 99999972345688
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCC---------HHHHHHHHHHHHHHHhc
Q 014196 298 QELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGS---------PLAQRRASKLLQWFKDE 353 (429)
Q Consensus 298 ~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~---------~~~k~~A~~lL~~l~~~ 353 (429)
|++|+++|.+||.+++++++.+++.|++|+|+.++...+ ...++.|.|.|.++.+.
T Consensus 249 RE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg 313 (2102)
T PLN03200 249 RAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999998544 33589999999998764
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=255.80 Aligned_cols=282 Identities=18% Similarity=0.224 Sum_probs=251.7
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.++.+|..|... ++..|.+|+++|.++|..+.+.-..++++|++|.++.+|.+++..+++.|+|||+|++.+....|
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 47799999999855 68999999999999999999999999999999999999999999999999999999999998789
Q ss_pred HHHHhcCccchhhhhccCCCH-HHHHHHHHHHHHhhccCCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 150 AIMVEAGILTKLPKNVDAVDE-STRHEFGELLLSLSSLANTHIPLS-SSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~-~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
..+.+.|++++|..++..... ...++++++|.|||...+..+.+. -..++|.|..++.+.|. ++..+|++||.+|+.
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~-~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDE-EVLTDACWALSYLTD 266 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhc
Confidence 999999999999999987664 678899999999997765555554 46789999999999998 789999999999998
Q ss_pred CCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 228 VLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 228 ~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
++..+ ..++++|++|.|+++|..++ .++-.|+.+++|++. +++..+.+.+.|+++ .|..++..+.....++.|+++
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~-~l~~ll~~s~~~~ikkEAcW~ 345 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALP-VLSNLLSSSPKESIKKEACWT 345 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHH-HHHHHhccCcchhHHHHHHHH
Confidence 76655 88899999999999999876 788899999999987 566677788888875 899999744555678889999
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
+.||++++.++.+.++++|++|.|+.+++.+.-+.|+.|+|++.++.-++
T Consensus 346 iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 346 ISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred HHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999887543
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=276.47 Aligned_cols=279 Identities=17% Similarity=0.158 Sum_probs=243.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+.++.||+.|.+++...|..|++.|++++..+++++..++++|+||+|+.+|.+++..+++.|+|+|.||+.+++.++.
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~ 524 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA 524 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH
Confidence 45799999999999999999999999999998889999999999999999999999999999999999999998643455
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCc--------------------------------------cc
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH--------------------------------------IP 192 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~--------------------------------------~~ 192 (429)
.|.++|+||+|+.+|.+++.+.++.++++|.+|+...+.. ..
T Consensus 525 iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 525 CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 5558899999999999999999999999999996432211 00
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC--C
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV--T 268 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~--~ 268 (429)
....|+++.|+++|++++. ..++.|+++|.|++.. ++++..++..|+||+++.+|...+ ++++.++.+|.+++. .
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~-~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKE-ETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred hhccccHHHHHHHHcCCCH-HHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence 1146899999999999987 7999999999999985 455788999999999999999875 899999999999995 4
Q ss_pred hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 269 STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 269 ~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
++.+..+++.|+++ .|+++|. +.+....+.|+.+|.+++.. ++.+..+..+|++++|++++++|+++.|+.|+|.|.
T Consensus 684 ~~q~~~~v~~GaV~-pL~~LL~-~~d~~v~e~Al~ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~ 760 (2102)
T PLN03200 684 ENRKVSYAAEDAIK-PLIKLAK-SSSIEVAEQAVCALANLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALA 760 (2102)
T ss_pred HHHHHHHHHcCCHH-HHHHHHh-CCChHHHHHHHHHHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHH
Confidence 55667788878876 7999998 78889999999999999876 457788889999999999999999999999999877
Q ss_pred HHHhc
Q 014196 349 WFKDE 353 (429)
Q Consensus 349 ~l~~~ 353 (429)
.|...
T Consensus 761 ~L~~~ 765 (2102)
T PLN03200 761 QLLKH 765 (2102)
T ss_pred HHHhC
Confidence 66654
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=220.91 Aligned_cols=315 Identities=21% Similarity=0.206 Sum_probs=266.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
.++..|+.....+..++|..++..|.+|+..+ .+|..++..|++.+|..+-++.|..+|.++..+|.|+.... +||+.
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~-EnRr~ 203 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATFD-SNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR-ENRRV 203 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhccc-cchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh-hhhhh
Confidence 34566777777777889999999999999874 79999999999999999888999999999999999999886 69999
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCC--cHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE--ILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
+|.+|++|.|+.++.+++...+..+..++.+++....++..+++.| .+|.||.++.++++ ++|-.|..+|.||+...
T Consensus 204 LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 204 LVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD-KVKCQAGLALRNLASDT 282 (550)
T ss_pred hhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999998888888888776 99999999999998 89999999999999999
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMIL 308 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L 308 (429)
+....++++|.+|.++++|+++. +..-..++++.|++-+|-+-.-|+++|-+- .||++|...++++.|-+|+.+|++|
T Consensus 283 ~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~-pLVrlL~~~dnEeiqchAvstLrnL 361 (550)
T KOG4224|consen 283 EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLR-PLVRLLRAGDNEEIQCHAVSTLRNL 361 (550)
T ss_pred hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchh-HHHHHHhcCCchhhhhhHHHHHHHH
Confidence 99999999999999999998875 777788889999999999989999988775 7999998556777999999999999
Q ss_pred hhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCC-CCCCCCcc-ccccCCCCChhhhHHHHHH
Q 014196 309 AHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMG-PHSGPQTR-RVSIGSPVSPREAQEGKKM 386 (429)
Q Consensus 309 ~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~k~~ 386 (429)
+..++.++..+.+.|++|.|.+++.+++-.+|.+-...+..|.-....|.. ..++ .+. -+++....|++.+..+..|
T Consensus 362 Aasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~g-i~~iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 362 AASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSG-IIPILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred hhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcC-CcceeecccCccchhhcccHHHH
Confidence 998888999999999999999999999988888777766666643322211 0010 011 0123334477777777777
Q ss_pred HHHHH
Q 014196 387 MKNLV 391 (429)
Q Consensus 387 l~~~~ 391 (429)
|-++-
T Consensus 441 L~Nls 445 (550)
T KOG4224|consen 441 LINLS 445 (550)
T ss_pred HHhhh
Confidence 66553
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=222.72 Aligned_cols=282 Identities=16% Similarity=0.161 Sum_probs=244.7
Q ss_pred hhHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc
Q 014196 69 DDCVLLQKSVKRLH-FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 69 ~~~~~l~~lv~~L~-~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
.+.+.+|++|+.+. ......+.+|+++|.+++......-..++++|++|.+++||.+++.++++.++|||+|++.+++.
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 56778999999995 44567888999999999987766667788999999999999999999999999999999999987
Q ss_pred hHHHHHhcCccchhhhhccCCC--HHHHHHHHHHHHHhhccCCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 014196 148 NKAIMVEAGILTKLPKNVDAVD--ESTRHEFGELLLSLSSLANTHIPLS-SSEILPFLVGILESGSSVETKELCIGALYN 224 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 224 (429)
.|..+.+.|++++++.++.+.. ....+++.++|.||+.-.+..+.-. -..++|.|.+++.+.++ ++..+|++|+.+
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~-evlvDA~WAiSY 269 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDP-EVLVDACWAISY 269 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHH
Confidence 8999999999999999998765 4778899999999996543222221 24579999999999998 788999999999
Q ss_pred hccCCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCChhHHHHH
Q 014196 225 LSAVLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 225 Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A 301 (429)
|+..+..+ ..+++.|..+.|+++|.+++ .++.-++....|++.. +...+.+.++|.+. ++-.+|+ +.....+..|
T Consensus 270 lsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~-a~~~lLs-~~ke~irKEa 347 (526)
T COG5064 270 LSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALK-AFRSLLS-SPKENIRKEA 347 (526)
T ss_pred hccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHH-HHHHHhc-Chhhhhhhhh
Confidence 99987666 77899999999999999876 8889999999999884 55566778888775 8888988 7778899999
Q ss_pred HHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 302 AYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 302 ~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
++.+.++.+++.++.+.+++++.+|+|+.++....-++|+.|+|.+.+....
T Consensus 348 CWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 348 CWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred heeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999988777653
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=215.59 Aligned_cols=277 Identities=20% Similarity=0.193 Sum_probs=246.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcC--cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELG--VIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
.+++|.||..+++++.++|..+..+|.+++- +..+|+.+++.| .||.||++..++++.++..|..+|+||+.+. +.
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Y 284 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EY 284 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hh
Confidence 4568999999999999999999999999997 458999999998 9999999999999999999999999999997 68
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA- 227 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~- 227 (429)
...|+++|++|.++++|+++.....-..+..+.|++.++-|...|.+.|++.+||++|+.++.++++-+|..+|+||+.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 9999999999999999998876666666778999999999999999999999999999999887799999999999998
Q ss_pred CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHH
Q 014196 228 VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306 (429)
Q Consensus 228 ~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~ 306 (429)
...|+..+.+.|+||.+.+++.|.+ +++++..+++..|+.+++.+.++.+.|-++ .|+.+.. +.+.+.+.+|+.+|.
T Consensus 365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~-iLIp~t~-s~s~Ev~gNaAaAL~ 442 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIP-ILIPWTG-SESEEVRGNAAAALI 442 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcc-eeecccC-ccchhhcccHHHHHH
Confidence 6678999999999999999999887 999999999999999999999999987775 9999988 788999999999999
Q ss_pred HHhhCCHHHHHHHHh------CCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 307 ILAHQSSEQRDKMAK------SGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 307 ~L~~~~~~~~~~i~~------~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
++|..-+.+. .+++ .|+-..|..++.++..-.+..|.|.++.|-+
T Consensus 443 Nlss~v~~Ya-rviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 443 NLSSDVEHYA-RVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred hhhhhhHHHH-HHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 9997533333 3333 3566677888888888889999997666664
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=224.27 Aligned_cols=321 Identities=17% Similarity=0.155 Sum_probs=261.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh--chHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCc
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE--DVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~--~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
.......+..+.+.++..+..+...+|.+... +|. -..+...|+||.+|.+|.. .++.+|..|+|+|.|+|.++.+
T Consensus 65 ~~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~pp-i~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 65 ASNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPP-IDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCC-HHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchh
Confidence 33477888889999999999999999987542 233 3445555999999999975 5699999999999999999877
Q ss_pred hHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 148 NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
....++++|++|.++.++.+++..+++.|+++|.|++-+. ..+..+.+.|++++|+.++...+.....+++.|+|.|||
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999776 566777799999999999998775457889999999999
Q ss_pred cCCCChhHH-HhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 227 AVLDNARPM-VSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 227 ~~~~n~~~i-v~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
.+..-...+ .-..++|.|..++.+.| .+...|+.+|..|+. .+|..+.+.+.|.++ .||++|. +.++..+..|+.
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~-~LV~lL~-~~~~~v~~PaLR 301 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVP-RLVDLLG-HSSPKVVTPALR 301 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchH-HHHHHHc-CCCcccccHHHh
Confidence 987544333 33688999999999877 899999999999996 678888888977775 9999999 889999999999
Q ss_pred HHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcc--ccC--CCCCCCCCccccccCCCCChh
Q 014196 304 ILMILAHQSSEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFKDER--QAK--MGPHSGPQTRRVSIGSPVSPR 378 (429)
Q Consensus 304 ~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~ 378 (429)
++.|+..++..+.+.++..|++|.|..++.. .....|+.|+|++.++.... |.. +..+-.|... .....+.-+
T Consensus 302 aiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li--~~l~~~ef~ 379 (514)
T KOG0166|consen 302 AIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLI--NLLQTAEFD 379 (514)
T ss_pred hccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHH--HHHhccchH
Confidence 9999999999999999999999999999995 56779999999999998642 221 1111111111 222344578
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 014196 379 EAQEGKKMMKNLVQQSLH 396 (429)
Q Consensus 379 ~~~~~k~~l~~~~~~~~~ 396 (429)
.+++|.-|+.++...+.+
T Consensus 380 ~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 380 IRKEAAWAISNLTSSGTP 397 (514)
T ss_pred HHHHHHHHHHhhcccCCH
Confidence 889999998877665443
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=181.28 Aligned_cols=303 Identities=15% Similarity=0.141 Sum_probs=247.3
Q ss_pred HHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc
Q 014196 45 NINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS 124 (429)
Q Consensus 45 ~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~ 124 (429)
++=..|...|+..|. .....-..+.+.+|.+++.|.+++.+++.+++++|.++|.+++.+|..+.++|++++|+.+|.
T Consensus 132 qfEAaWalTNiaSGt--t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ 209 (526)
T COG5064 132 QFEAAWALTNIASGT--TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL 209 (526)
T ss_pred HHHHHHHHhhhccCc--ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH
Confidence 334567777744332 111222346778999999999999999999999999999999999999999999999999998
Q ss_pred CCC--HHHHHHHHHHHHHhccCCCc--hHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCc-cccccCCcH
Q 014196 125 TEV--IGRRRAAIKALIQLANGTYT--NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH-IPLSSSEIL 199 (429)
Q Consensus 125 s~~--~~~~~~A~~aL~nLa~~~~~--nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i 199 (429)
+.- ......+.|.|.||+.+... +...| ..++|.|.+++.+.++++...|++++..|+..+.-+ ..+.+.|..
T Consensus 210 ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~ 287 (526)
T COG5064 210 SSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIP 287 (526)
T ss_pred hccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCc
Confidence 764 47789999999999987422 23333 346889999999999999999999999999655333 344589999
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh-hHHHhcCcHHHHHHhccCC-cchHHHHHHHHHHhhC-ChhcHHHHh
Q 014196 200 PFLVGILESGSSVETKELCIGALYNLSAVLDNA-RPMVSNGVVHTLLKLCSMK-ERLSEKSLATLGNLVV-TSTGKKAME 276 (429)
Q Consensus 200 ~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~-~~~~~~a~~~L~~La~-~~e~~~~i~ 276 (429)
+-||++|.+.+. .++..|++.+.|+....+.. ..++..|+++.+..+|+.+ +.+++.++.++.|+.. +.+..+++.
T Consensus 288 ~RLvElLs~~sa-~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavi 366 (526)
T COG5064 288 GRLVELLSHESA-KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVI 366 (526)
T ss_pred HHHHHHhcCccc-cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHH
Confidence 999999999987 78889999999999977766 6788999999999999876 4899999999999987 678888999
Q ss_pred cCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC---CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 277 DSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ---SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 277 ~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~---~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
+..-+| .|+++|. ...-..+..|++++.+...+ -|+..+.+++.|++.+|+.+|.....++-+-|...++++-+.
T Consensus 367 d~nliP-pLi~lls-~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~ 444 (526)
T COG5064 367 DANLIP-PLIHLLS-SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKV 444 (526)
T ss_pred hcccch-HHHHHHH-HHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhh
Confidence 988776 7999998 67778899999999998764 367888999999999999999877666666666666555543
Q ss_pred c
Q 014196 354 R 354 (429)
Q Consensus 354 ~ 354 (429)
+
T Consensus 445 G 445 (526)
T COG5064 445 G 445 (526)
T ss_pred h
Confidence 3
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-19 Score=188.44 Aligned_cols=321 Identities=18% Similarity=0.135 Sum_probs=251.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+.++.||+.|.+++.+....++..|++|+-.. +|+..|.+.|+|++|+.++.+++.+++..++.+|.||+++. .+|.
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~-~~R~ 366 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDP-ELRS 366 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCH-HHHH
Confidence 456889999999999999999999999999754 79999999999999999999999999999999999999998 6999
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD 230 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 230 (429)
.|++.|.||+|+.+|..++ .+..+..+|++||..++++..+...+++|.|++++.+++..++...++..+.|||.++.
T Consensus 367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 9999999999999998543 45667889999999999999999999999999988776544566778899999999999
Q ss_pred ChhHHHhcCcHHHHHHhc-------------------------------------cCC--cchHHHHHHHHHHhhCChhc
Q 014196 231 NARPMVSNGVVHTLLKLC-------------------------------------SMK--ERLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 231 n~~~iv~~G~v~~Lv~lL-------------------------------------~~~--~~~~~~a~~~L~~La~~~e~ 271 (429)
|...|++.|+++.|++.. ..+ +++.-.|+++|.||...+..
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld 524 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD 524 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence 999999988888776531 111 26677899999999876656
Q ss_pred HHHHhcCCCChHHHHHhcccC-CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHH
Q 014196 272 KKAMEDSPLVPESLIEILTWE-EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG--SPLAQRRASKLLQ 348 (429)
Q Consensus 272 ~~~i~~~~~i~~~Lv~~L~~~-~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~--~~~~k~~A~~lL~ 348 (429)
...+.+..+++|.|.++|... ..+.....++..++.+|. ++..+..+.+.|+++.|++++... +++..-.......
T Consensus 525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~ 603 (708)
T PF05804_consen 525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFY 603 (708)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 667766556666999999721 234566778888888775 578899999999999999999874 4566555555554
Q ss_pred HHHhccccCCCCCCCCCccc----cccCCCCChhhhHHHHHHHHHHHHHHHHHh
Q 014196 349 WFKDERQAKMGPHSGPQTRR----VSIGSPVSPREAQEGKKMMKNLVQQSLHKN 398 (429)
Q Consensus 349 ~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~ 398 (429)
.|-.++++|. +-....+- +...++.....++-|..+|.-|.....+.+
T Consensus 604 ~ll~h~~tr~--~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 604 QLLFHEETRE--VLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HHHcChHHHH--HHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 4444343331 10001111 123355578888999999988888665554
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-20 Score=189.16 Aligned_cols=326 Identities=21% Similarity=0.175 Sum_probs=249.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc--hH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT--NK 149 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~--nk 149 (429)
..+++.+.+|.+.++.+|..|+..|..++..+.+.|..+.+.|+|+.||.+|.+.+.++|.+|+++|.||.++... ||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999988765 89
Q ss_pred HHHHhcCccchhhhhccC-CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC-------C-c-----HHHH
Q 014196 150 AIMVEAGILTKLPKNVDA-VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESG-------S-S-----VETK 215 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-------~-~-----~~~~ 215 (429)
-.|.+.++|+.++.++.. .+.++++..+.+||||++.|..+..|.. .+++.|..-+-.+ + + .++-
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999999985 6789999999999999999877777653 3456665544321 1 1 2466
Q ss_pred HHHHHHHHHhcc-CCCChhHHHhc-CcHHHHHHhcc------CCc-chHHHHHHHHHHhhCChh------cHHHHhcC--
Q 014196 216 ELCIGALYNLSA-VLDNARPMVSN-GVVHTLLKLCS------MKE-RLSEKSLATLGNLVVTST------GKKAMEDS-- 278 (429)
Q Consensus 216 ~~A~~aL~nLs~-~~~n~~~iv~~-G~v~~Lv~lL~------~~~-~~~~~a~~~L~~La~~~e------~~~~i~~~-- 278 (429)
.++.++|.|++. ..+.+++|.+. |.|..|+..+. +.+ ..+|+|+.+|.||..--+ .++...+.
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 789999999998 67778888885 99999998876 233 899999999999975211 00000000
Q ss_pred ------------------------------------C-C----ChHHHHH----hcccCCChhHHHHHHHHHHHHhhCC-
Q 014196 279 ------------------------------------P-L----VPESLIE----ILTWEEKPKCQELSAYILMILAHQS- 312 (429)
Q Consensus 279 ------------------------------------~-~----i~~~Lv~----~L~~~~s~~~~e~A~~~L~~L~~~~- 312 (429)
. | .-+.+|+ +|....++...|.++++|-+++.+.
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0 0 0012222 2332456778899999999999853
Q ss_pred ---HHHHHHH-HhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccC--CCCCCCCCccc-ccc---CCCCChhhhHH
Q 014196 313 ---SEQRDKM-AKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAK--MGPHSGPQTRR-VSI---GSPVSPREAQE 382 (429)
Q Consensus 313 ---~~~~~~i-~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~--~~~~~~~~~~~-~~~---~~~~~~~~~~~ 382 (429)
...+..+ .++.+.|+|+++++.+++++.+.++.+|++|+.+..-+ ++.++.|.+-+ +.- ...-+||...-
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~ 631 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRA 631 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHH
Confidence 3566666 66888999999999999999999999999999865322 33333333322 221 11226787777
Q ss_pred HHHHHHHHHHHHHHHh
Q 014196 383 GKKMMKNLVQQSLHKN 398 (429)
Q Consensus 383 ~k~~l~~~~~~~~~~~ 398 (429)
.=..|.+||+++++.+
T Consensus 632 vc~tl~niv~~~~~nA 647 (717)
T KOG1048|consen 632 VCHTLNNIVRKNVLNA 647 (717)
T ss_pred HHHhHHHHHHHhHHHH
Confidence 7788999998877653
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=176.06 Aligned_cols=259 Identities=20% Similarity=0.180 Sum_probs=213.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC
Q 014196 90 EMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD 169 (429)
Q Consensus 90 ~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~ 169 (429)
..+...|-+++. ++.+...+++.|+|+.||.+|++++.++...++.+|.+|+... +||..|.+.|+|++|++++.+.+
T Consensus 267 rv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 267 RVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcCCC
Confidence 356667888986 6689999999999999999999999999999999999999998 59999999999999999999988
Q ss_pred HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc
Q 014196 170 ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 170 ~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 249 (429)
.+.+..+..+|+|||.+++.+..+.+.|+||.|+.+|.+++ .+..|+.+|+|||..++++..+...+++|.++.++-
T Consensus 345 ~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~---~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll 421 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN---FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLL 421 (708)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc---hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHH
Confidence 88899999999999999999999999999999999998754 356799999999999999999999999999999775
Q ss_pred CC-c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhc-------------------------------------c
Q 014196 250 MK-E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEIL-------------------------------------T 290 (429)
Q Consensus 250 ~~-~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L-------------------------------------~ 290 (429)
.. + .+....++++.||+.++.+.+.|.+.+|+. .|++.. .
T Consensus 422 ~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~-~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~ 500 (708)
T PF05804_consen 422 ENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQ-SLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVS 500 (708)
T ss_pred hCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHH-HHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 43 3 566667888889999999999998866654 555421 1
Q ss_pred cCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHHHhcc
Q 014196 291 WEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG--SPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 291 ~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~--~~~~k~~A~~lL~~l~~~~ 354 (429)
...++...-.++++|.||...+....+.+.+.+.+|-|..++..| .+...-.++.+++.+...+
T Consensus 501 ~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 501 SGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred cCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 012233345567777777655555666666789999999999887 3567777777777777544
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-16 Score=148.14 Aligned_cols=239 Identities=16% Similarity=0.183 Sum_probs=194.3
Q ss_pred cCcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc-CCCHHHHHHHHHHHHHhhccCCC
Q 014196 113 LGVIQMLVSMVST--EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD-AVDESTRHEFGELLLSLSSLANT 189 (429)
Q Consensus 113 ~G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~ 189 (429)
+-+...+|.+|.. ++.++-...+..+..-+..+|.||+.+++.|+++.+...|. .+...+.+++.++++.|...|+.
T Consensus 144 a~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi 223 (461)
T KOG4199|consen 144 AEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI 223 (461)
T ss_pred cccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence 3334444444432 23445555555555556666789999999999999986664 45566788888999999988887
Q ss_pred ccccc----------cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC-c----ch
Q 014196 190 HIPLS----------SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK-E----RL 254 (429)
Q Consensus 190 ~~~i~----------~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~-~----~~ 254 (429)
+..++ ..|++..|++.++.+-.+.....++.+|..|+..++.+..++|.|++..|+.++.|+ + ..
T Consensus 224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l 303 (461)
T KOG4199|consen 224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTL 303 (461)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHH
Confidence 76665 467788999999876333667789999999999999999999999999999999985 2 46
Q ss_pred HHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccC-CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh
Q 014196 255 SEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWE-EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL 333 (429)
Q Consensus 255 ~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~-~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~ 333 (429)
.+.++.+|..|+.++..+..|++.||.+ .++.++.++ ++|.+-+.++.++..||-+++++...+++.|+-...++.++
T Consensus 304 ~k~~lslLralAG~DsvKs~IV~~gg~~-~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmk 382 (461)
T KOG4199|consen 304 AKTCLSLLRALAGSDSVKSTIVEKGGLD-KIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMK 382 (461)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHhcChH-HHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHH
Confidence 7889999999999999999999999986 788877644 78888899999999999999999999999999999999999
Q ss_pred cCCH--HHHHHHHHHHHHHHh
Q 014196 334 LGSP--LAQRRASKLLQWFKD 352 (429)
Q Consensus 334 ~~~~--~~k~~A~~lL~~l~~ 352 (429)
.... .+|++|+|+++++.-
T Consensus 383 ahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 383 AHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHH
Confidence 8754 578999999999985
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.2e-17 Score=171.72 Aligned_cols=260 Identities=20% Similarity=0.210 Sum_probs=214.1
Q ss_pred HHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC------------CHHHHHHHHHHHHHhccCCCchHHHHH-hcCc
Q 014196 91 MAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE------------VIGRRRAAIKALIQLANGTYTNKAIMV-EAGI 157 (429)
Q Consensus 91 ~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~------------~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~ 157 (429)
.|+..|..++. ++++|..+.+.|++.++-.||.-+ ...++.+|..+|.||.++++.||..+. ..|.
T Consensus 317 aA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgf 395 (2195)
T KOG2122|consen 317 AALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGF 395 (2195)
T ss_pred HHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhH
Confidence 56777777775 679999999999999998887532 146899999999999999988888887 5799
Q ss_pred cchhhhhccCCCHHHHHHHHHHHHHhhccCC--CccccccCCcHHHHHHhhh-cCCcHHHHHHHHHHHHHhcc-CCCChh
Q 014196 158 LTKLPKNVDAVDESTRHEFGELLLSLSSLAN--THIPLSSSEILPFLVGILE-SGSSVETKELCIGALYNLSA-VLDNAR 233 (429)
Q Consensus 158 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~A~~aL~nLs~-~~~n~~ 233 (429)
++.+|..|.+...++.+..|.+|.||+-..+ .+..+.+.|-+..|+...- .... ...+..+.|||||+. +.+|+.
T Consensus 396 MeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kE-sTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 396 MEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKE-STLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhccc-chHHHHHHHHhhhhhcccccch
Confidence 9999999988778888999999999997653 3566678899999988644 3332 345569999999998 478999
Q ss_pred HHHhc-CcHHHHHHhccCC----c-chHHHHHHHHHHhhC----ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 234 PMVSN-GVVHTLLKLCSMK----E-RLSEKSLATLGNLVV----TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 234 ~iv~~-G~v~~Lv~lL~~~----~-~~~~~a~~~L~~La~----~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
.|... |++..|+.+|.-. . .++|.+-++|.|++. +++.|+...++..+ ..|++.|. +.+-.+..++++
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCL-q~LLQ~LK-S~SLTiVSNaCG 552 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCL-QTLLQHLK-SHSLTIVSNACG 552 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHH-HHHHHHhh-hcceEEeecchh
Confidence 98875 9999999999732 2 789999999998765 56677777776665 59999998 677788889999
Q ss_pred HHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 304 ILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 304 ~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
+||||...+++.++.+.+.|+|+.|..|+.+....+-+-++..|++|-..|
T Consensus 553 TLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 553 TLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999987777777777777776544
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.4e-15 Score=138.17 Aligned_cols=279 Identities=14% Similarity=0.172 Sum_probs=222.3
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCCC-
Q 014196 71 CVLLQKSVKRLH--FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE-VIGRRRAAIKALIQLANGTY- 146 (429)
Q Consensus 71 ~~~l~~lv~~L~--~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~- 146 (429)
..+..-+|+.|. ..+.+........++.-+-.++.||+.+.+.|+.+.+...|... ...+...+.|+++.|..+++
T Consensus 144 a~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi 223 (461)
T KOG4199|consen 144 AEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI 223 (461)
T ss_pred cccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence 344566667665 33566777788888888878889999999999999999777653 34577778999999988764
Q ss_pred --------chHHHHHhcCccchhhhhccCC-CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHH---H
Q 014196 147 --------TNKAIMVEAGILTKLPKNVDAV-DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVE---T 214 (429)
Q Consensus 147 --------~nk~~iv~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~---~ 214 (429)
.....|++.|++..|+..++-. ++.....+..+|..|+..++.+..|.+.|++..|++++.+.+..+ +
T Consensus 224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l 303 (461)
T KOG4199|consen 224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTL 303 (461)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHH
Confidence 2456788888888888887643 355666788899999999999999999999999999998743323 4
Q ss_pred HHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC---cchHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcc
Q 014196 215 KELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK---ERLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 215 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~---~~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
.+.++..|..|+..+.++..+|+.|+.+.++.++... +.+.+.+++++.-||- .|+....+++.|+.. ..|+.|.
T Consensus 304 ~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~-~avqAmk 382 (461)
T KOG4199|consen 304 AKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAAD-LAVQAMK 382 (461)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHH-HHHHHHH
Confidence 4678999999999999999999999999999987532 3788888999998886 799988999988775 8899997
Q ss_pred cCC-ChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 291 WEE-KPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 291 ~~~-s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
.++ ....|.+|++.+.||..++.+++..++..| +..|+.......+.....|-..|+-|+
T Consensus 383 ahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 383 AHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 543 346789999999999999999999999988 678887777666666666666676665
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-14 Score=130.85 Aligned_cols=192 Identities=22% Similarity=0.208 Sum_probs=165.0
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 70 DCVLLQKSVKRLHF-GSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 70 ~~~~l~~lv~~L~~-~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
+...++.|+..|+. .++..+..|..++.+.+. .+.++..+.+.|+++.+..+|..+++.+++.|+++|.|++.+. +|
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~-en 87 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND-EN 87 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh-hh
Confidence 46678999999995 489999999999999886 4589999999999999999999999999999999999999997 58
Q ss_pred HHHHHhcCccchhhhhccC--CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 149 KAIMVEAGILTKLPKNVDA--VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
+..|-. .++.+...+.+ .+.+.+..+..+|.+|+..++++..+. +.+|.++.+|..|+. .+|..++++|.|||
T Consensus 88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~-~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSE-KTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCCh-HHHHHHHHHHHHhc
Confidence 776643 46666664433 346677777889999998888877775 479999999999998 79999999999999
Q ss_pred cCCCChhHHHhcCcHHHHHHhccCC-c-chHHHHHHHHHHhhCC
Q 014196 227 AVLDNARPMVSNGVVHTLLKLCSMK-E-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 227 ~~~~n~~~iv~~G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La~~ 268 (429)
.++.+...++.+++++.++.++... + ++...++....|+..+
T Consensus 163 ~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999865 2 8888999999999764
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-13 Score=139.42 Aligned_cols=281 Identities=17% Similarity=0.121 Sum_probs=210.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchH--HHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCC-
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVK--IKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTY- 146 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~--~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~- 146 (429)
.++|+.||..|.+.+.+++..|+.+||+|...+.. |+-.|.++|+|+.|+++|+. .|.++++....+|+||+..|.
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~l 353 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDAL 353 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHH
Confidence 45789999999999999999999999999865544 99999999999999999987 788999999999999875531
Q ss_pred -----------------------------------------------------chHHHHHh-cCccchhhhhccC-----
Q 014196 147 -----------------------------------------------------TNKAIMVE-AGILTKLPKNVDA----- 167 (429)
Q Consensus 147 -----------------------------------------------------~nk~~iv~-~G~i~~Lv~lL~~----- 167 (429)
+.|+.+.+ .|.|+.|+..++.
T Consensus 354 K~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~ 433 (717)
T KOG1048|consen 354 KMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKS 433 (717)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhc
Confidence 12333332 4677777777652
Q ss_pred -CCHHHHHHHHHHHHHhhccCC------Cc--------------------------cc---------cc-----------
Q 014196 168 -VDESTRHEFGELLLSLSSLAN------TH--------------------------IP---------LS----------- 194 (429)
Q Consensus 168 -~~~~~~~~aa~~L~~Ls~~~~------~~--------------------------~~---------i~----------- 194 (429)
.+....++++.+|.||+..-+ .. .. |-
T Consensus 434 ~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~ 513 (717)
T KOG1048|consen 434 DLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEW 513 (717)
T ss_pred cccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCcee
Confidence 235567888899999984211 00 00 00
Q ss_pred --cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCC-----hhHH-HhcCcHHHHHHhccCCc-chHHHHHHHHHHh
Q 014196 195 --SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDN-----ARPM-VSNGVVHTLLKLCSMKE-RLSEKSLATLGNL 265 (429)
Q Consensus 195 --~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n-----~~~i-v~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~L 265 (429)
...+|..=..+|.......+.+.++++|-||+...-- +..+ ...-+.|+|+++|...+ .+++.++.+|.||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 0111222122333322235778899999999975432 2333 45678899999998664 8999999999999
Q ss_pred hCChhcHHHHhcCCCChHHHHHhcccCCC-----hhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-CCHHH
Q 014196 266 VVTSTGKKAMEDSPLVPESLIEILTWEEK-----PKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL-GSPLA 339 (429)
Q Consensus 266 a~~~e~~~~i~~~~~i~~~Lv~~L~~~~s-----~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~ 339 (429)
+.+..++..|.. ++++ -||+.|...+. .+..-.++.+|++|...+..+...+.+.++++.|+.+..+ .+++.
T Consensus 594 s~d~rnk~ligk-~a~~-~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~ 671 (717)
T KOG1048|consen 594 SRDIRNKELIGK-YAIP-DLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKE 671 (717)
T ss_pred ccCchhhhhhhc-chHH-HHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHH
Confidence 999999999984 5664 89999973222 4566778899999998888999999999999999999987 47889
Q ss_pred HHHHHHHHHHHHhc
Q 014196 340 QRRASKLLQWFKDE 353 (429)
Q Consensus 340 k~~A~~lL~~l~~~ 353 (429)
-+.|+.+|..|...
T Consensus 672 ~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 672 FKAASSVLDVLWQY 685 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887754
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=121.45 Aligned_cols=194 Identities=18% Similarity=0.139 Sum_probs=164.0
Q ss_pred HHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC
Q 014196 110 MAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN 188 (429)
Q Consensus 110 i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~ 188 (429)
+.+.+-++.|+.+|+. .||.+++.++.++.|.+..+ .++..|.+.|+++.+..++..+++..++.|..+|.|++...+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 3566778999999996 68999999999999999987 699999999999999999999999999999999999999988
Q ss_pred CccccccCCcHHHHHHhhhcC--CcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHh
Q 014196 189 THIPLSSSEILPFLVGILESG--SSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNL 265 (429)
Q Consensus 189 ~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~L 265 (429)
++..|.. .++.+.+.+.+. ++ .++..++++|.||+..++.+..+. +.+|.++.+|..++ .++..++.+|.||
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns-~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNS-EVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCC-HHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 8887743 577777765543 44 688899999999998877766664 57999999998765 8899999999999
Q ss_pred hCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 266 VVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 266 a~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
+.++.....+..+++.. .++.++..+.+...-..++....+|..
T Consensus 162 S~np~~~~~Ll~~q~~~-~~~~Lf~~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 162 SENPDMTRELLSAQVLS-SFLSLFNSSESKENLLRVLTFFENINE 205 (254)
T ss_pred ccCHHHHHHHHhccchh-HHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99999988888887664 899998744556667777777778864
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-11 Score=126.69 Aligned_cols=278 Identities=19% Similarity=0.223 Sum_probs=213.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.....+.+...|.++++.+|.-++..|++++.++......+.+.+.++.++.+|.++|.++.+.|+.+|.+|+.+. .+-
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhH
Confidence 4556778888999999999999999999999888777788889999999999999999999999999999999986 466
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
..+++.+.++.|..++...+...|..+..++.+++... +....+.+.|.++.+++.|.++|. -++.+|+..|..|+..
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDi-Lvqlnalell~~La~~ 232 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDI-LVQLNALELLSELAET 232 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccH-HHHHHHHHHHHHHHcC
Confidence 67888888999999998767777777888888887554 444555678999999999999776 6899999999999999
Q ss_pred CCChhHHHhcCcHHHHHHhccCCc--c-----hHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHH
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMKE--R-----LSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~~--~-----~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A 301 (429)
+.+...+.+.|+++.|+.++.+.. . ..-..+...++++.. .....+...+.+...|.+++. ..++..+..|
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~-s~d~~~~~~A 310 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLE-SQDPTIREVA 310 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhC-CCChhHHHHH
Confidence 999999999999999999997541 2 223333555666663 111222222333334555665 6788889999
Q ss_pred HHHHHHHhhCCHHHHHHH-HhCC-c----hHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 302 AYILMILAHQSSEQRDKM-AKSG-I----VHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 302 ~~~L~~L~~~~~~~~~~i-~~~G-~----v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
..+++.+|.. .+....+ ...| . +........+++...|.++...|..+-.
T Consensus 311 ~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~ 366 (503)
T PF10508_consen 311 FDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT 366 (503)
T ss_pred HHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence 9999999965 4555555 4433 3 3333444455677888888887777743
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=132.23 Aligned_cols=277 Identities=19% Similarity=0.148 Sum_probs=209.1
Q ss_pred HHHHHHHHhcCC---CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHH---H-------hhcCCC-------HHHH-
Q 014196 73 LLQKSVKRLHFG---SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLV---S-------MVSTEV-------IGRR- 131 (429)
Q Consensus 73 ~l~~lv~~L~~~---~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv---~-------lL~s~~-------~~~~- 131 (429)
-++.||+.|+.. +.+.++.|-.+|.++....++.+..=.+.-+++.|= . .|...+ .+-+
T Consensus 236 CLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~l 315 (2195)
T KOG2122|consen 236 CLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQL 315 (2195)
T ss_pred chHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhh
Confidence 468899999865 346667788889998764443332222222233322 1 222211 1233
Q ss_pred HHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC------------HHHHHHHHHHHHHhhccC-CCccccc-cCC
Q 014196 132 RAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD------------ESTRHEFGELLLSLSSLA-NTHIPLS-SSE 197 (429)
Q Consensus 132 ~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~------------~~~~~~aa~~L~~Ls~~~-~~~~~i~-~~g 197 (429)
..|+.+|..++++. +.|..+-+-|++..+..||+... ..+|+++..+|-||.+-+ .||..+. ..|
T Consensus 316 caA~~~lMK~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 316 CAALCTLMKLSFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHHhhccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 37889999999996 69999999999999988875311 457888999999999887 4666665 689
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCC-hhHHHhcCcHHHHHHhc-cCC-cchHHHHHHHHHHhhC-ChhcH
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYNLSAV-LDN-ARPMVSNGVVHTLLKLC-SMK-ERLSEKSLATLGNLVV-TSTGK 272 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n-~~~iv~~G~v~~Lv~lL-~~~-~~~~~~a~~~L~~La~-~~e~~ 272 (429)
++..+|..|.+... ++.+-.+.+|.||+-. +.| +..+.+.|-|..|+.+- ... +...+..+.+|+||+. +.+++
T Consensus 395 fMeavVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNK 473 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENK 473 (2195)
T ss_pred HHHHHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccc
Confidence 99999999998775 6777788999999963 445 46677789999998864 433 3678889999999998 68999
Q ss_pred HHHhcCCCChHHHHHhcccC---CChhHHHHHHHHHHHHhh---CCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHH
Q 014196 273 KAMEDSPLVPESLIEILTWE---EKPKCQELSAYILMILAH---QSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKL 346 (429)
Q Consensus 273 ~~i~~~~~i~~~Lv~~L~~~---~s~~~~e~A~~~L~~L~~---~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~l 346 (429)
..|+...|+...||.+|.-. .....-|.|-+||.|+.. ..+.+|+.+.+.+.+..|+..|++.+--+..+|+-.
T Consensus 474 A~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGT 553 (2195)
T KOG2122|consen 474 AEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGT 553 (2195)
T ss_pred hhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhh
Confidence 99999888888999999721 234567899999999886 357899999999999999999999887777777777
Q ss_pred HHHHH
Q 014196 347 LQWFK 351 (429)
Q Consensus 347 L~~l~ 351 (429)
|.+|.
T Consensus 554 LWNLS 558 (2195)
T KOG2122|consen 554 LWNLS 558 (2195)
T ss_pred hhhhh
Confidence 77766
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.7e-11 Score=121.58 Aligned_cols=307 Identities=17% Similarity=0.158 Sum_probs=220.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcC
Q 014196 77 SVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAG 156 (429)
Q Consensus 77 lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G 156 (429)
+...|...+.+.-..++..|..+.... ..... ..+..+.|...|.++++.+++.+++.|.+++.+++.....+.+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 666777766666666777788776533 12222 456688999999999999999999999999988743355667899
Q ss_pred ccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh-hHH
Q 014196 157 ILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA-RPM 235 (429)
Q Consensus 157 ~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~-~~i 235 (429)
.++.++.++..++.++...|+.+|..|+.....-..+.+.+.++.|..++...+. .+|..+..++.+++..++.. ..+
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~-~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSD-IVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999999999999999999999999776665566677789999999988665 57888999999999876655 667
Q ss_pred HhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccC-CChhHHHHHHHHH------HH
Q 014196 236 VSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWE-EKPKCQELSAYIL------MI 307 (429)
Q Consensus 236 v~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~-~s~~~~e~A~~~L------~~ 307 (429)
.+.|.++.++..|.+.| -++..++.+|..|+.++.|.+.+.+.|.+ +.|++++... .++ +-.+..+. .+
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~-~~L~~~l~~~~~dp--~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIF-DKLSNLLQDSEEDP--RLSSLLLPGRMKFFGN 275 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHH-HHHHHHHhccccCC--cccchhhhhHHHHHHH
Confidence 77899999999999876 67889999999999999999999997665 5899998732 222 22222222 23
Q ss_pred HhhCCHHHHHHHHh--CCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCC--CCCCCcccc---c--cCCCCChh
Q 014196 308 LAHQSSEQRDKMAK--SGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGP--HSGPQTRRV---S--IGSPVSPR 378 (429)
Q Consensus 308 L~~~~~~~~~~i~~--~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~--~~~~~~~~~---~--~~~~~~~~ 378 (429)
++..++.. +.. ...+..|.+++.++++..+..|-..+..++.+.+.+..- +.++.+..+ + ....+..|
T Consensus 276 la~~~~~~---v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~ 352 (503)
T PF10508_consen 276 LARVSPQE---VLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTE 352 (503)
T ss_pred HHhcChHH---HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchH
Confidence 33322221 111 123334445555667777788888999998765533111 112223221 1 22344678
Q ss_pred hhHHHHHHHHHHHHH
Q 014196 379 EAQEGKKMMKNLVQQ 393 (429)
Q Consensus 379 ~~~~~k~~l~~~~~~ 393 (429)
.+-++-.++..|+..
T Consensus 353 lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 353 LKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888888653
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.6e-11 Score=115.54 Aligned_cols=315 Identities=17% Similarity=0.149 Sum_probs=220.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
..+.-||+.|...+.+.-......|..|+-.+ +|+..+.+.|.|+.|+.+....+++++...+..|.|++++. .++..
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~K 381 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPK 381 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHH
Confidence 45677888888777777777788888888655 79999999999999999999999999999999999999998 69999
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHH-HHhccCCC
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGAL-YNLSAVLD 230 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL-~nLs~~~~ 230 (429)
++..|.+|.|+.++.+.. -...|...|+.+|.+++.+..++...+|+.|.+.+-++...++-. ++-++ .|||.+..
T Consensus 382 Mv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl-~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 382 MVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDL-ALIALCINLCLNKR 458 (791)
T ss_pred HhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecH-HHHHHHHHHHhccc
Confidence 999999999999996533 234577899999999999999999999999999887765434443 33444 58999888
Q ss_pred ChhHHHhcCcHHHHHHh------------c-------------------------c-CC-cchHHHHHHHHHHhhCChhc
Q 014196 231 NARPMVSNGVVHTLLKL------------C-------------------------S-MK-ERLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 231 n~~~iv~~G~v~~Lv~l------------L-------------------------~-~~-~~~~~~a~~~L~~La~~~e~ 271 (429)
|.+.+++..++..|++. + + +. +.+.-.|+++|+||.-++-.
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 88888887666655432 1 1 11 15566889999999887666
Q ss_pred HHHHhcCCCChHHHHHhcccCCC--hhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHH-HH
Q 014196 272 KKAMEDSPLVPESLIEILTWEEK--PKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG--SPLAQRRAS-KL 346 (429)
Q Consensus 272 ~~~i~~~~~i~~~Lv~~L~~~~s--~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~--~~~~k~~A~-~l 346 (429)
-..|.+...++|.+-..|. .+- ...+-..+-+++.++ .+......+..+|+|+.|+++++.. +++..-.-. -.
T Consensus 539 w~~ilq~~~LvPw~k~~L~-pga~eddLvL~~vi~~GT~a-~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF 616 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQ-PGADEDDLVLQIVIACGTMA-RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVF 616 (791)
T ss_pred HHHHHhhccccHHHHHhhc-CCccchhhhhHHHHHhhhhh-hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHH
Confidence 6777666666668888776 321 122333333444433 3456777777899999999999874 333222222 24
Q ss_pred HHHHHhccccC-CCCCCCCCccc---cccCCCCChhhhHHHHHHHHHHHHHHHH
Q 014196 347 LQWFKDERQAK-MGPHSGPQTRR---VSIGSPVSPREAQEGKKMMKNLVQQSLH 396 (429)
Q Consensus 347 L~~l~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~k~~l~~~~~~~~~ 396 (429)
++.+++.--.+ +...+ ... +...++-.++.++-|..+|.-|-...-+
T Consensus 617 ~Q~l~He~tr~~miket---~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 617 LQFLKHELTRRLMIKET---ALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred HHHHHHHHHHHHHHhhc---cchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence 56666521111 11100 111 2233444666777777777666654433
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=101.17 Aligned_cols=118 Identities=27% Similarity=0.294 Sum_probs=105.8
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC
Q 014196 109 LMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN 188 (429)
Q Consensus 109 ~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~ 188 (429)
.+++.|+++.|+.+|.+++..+++.++++|.+++.++++++..+++.|+++.++.++...+...+..++++|.+|+....
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46789999999999999999999999999999999966788899999999999999999889999999999999997663
Q ss_pred -CccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 189 -THIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 189 -~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
....+...|+++.|++++..++. .+++.++.+|.||+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~-~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNE-DIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCH-HHHHHHHHHHHHhhC
Confidence 34455678999999999999876 799999999999873
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-10 Score=111.50 Aligned_cols=281 Identities=17% Similarity=0.140 Sum_probs=197.9
Q ss_pred HHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC
Q 014196 49 QEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFG---SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST 125 (429)
Q Consensus 49 ~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~---~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s 125 (429)
-|........-.++..|..+.-...+.++-+.|+.- ....-..|...|.++|. +...-..++..+.+..||..|..
T Consensus 237 ~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr 315 (791)
T KOG1222|consen 237 FWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDR 315 (791)
T ss_pred HHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcc
Confidence 455443222223334444444445566666666542 11222346677788885 55667788888999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHh
Q 014196 126 EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGI 205 (429)
Q Consensus 126 ~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~l 205 (429)
.+.++.......|..|+..+ +||..+.+.|.|++|++++....++.+.....+|+|||.+..+++.+...|.+|.|+.+
T Consensus 316 ~n~~Ll~lv~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~l 394 (791)
T KOG1222|consen 316 SNSSLLTLVIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASL 394 (791)
T ss_pred cchHHHHHHHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHH
Confidence 99999999999999999998 59999999999999999999888999988889999999999999999999999999999
Q ss_pred hhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC-c-chHHHHHHHHHHhhCChhcHHHHhcCCCChH
Q 014196 206 LESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK-E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPE 283 (429)
Q Consensus 206 L~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~ 283 (429)
|.++.. +..|+..||.+|.++..+..+.-..+|+.+...+-.+ + ++-..-++...|||.+..+.+.+++-.|+-
T Consensus 395 l~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~- 470 (791)
T KOG1222|consen 395 LDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLD- 470 (791)
T ss_pred hCCccc---chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchH-
Confidence 988765 3458999999999999999999999999998855433 3 554455555568887655544444422221
Q ss_pred HHH------------Hhc-------------------------ccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchH
Q 014196 284 SLI------------EIL-------------------------TWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVH 326 (429)
Q Consensus 284 ~Lv------------~~L-------------------------~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~ 326 (429)
.|+ +++ ..+.++.---.|.++|.++.-.+-...+.+.+...||
T Consensus 471 ~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvP 550 (791)
T KOG1222|consen 471 LLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVP 550 (791)
T ss_pred HHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccH
Confidence 222 222 1111122223455555555544444555666678888
Q ss_pred HHHHHhhcC
Q 014196 327 VSLQLALLG 335 (429)
Q Consensus 327 ~L~~ll~~~ 335 (429)
-+-..++.|
T Consensus 551 w~k~~L~pg 559 (791)
T KOG1222|consen 551 WMKTQLQPG 559 (791)
T ss_pred HHHHhhcCC
Confidence 888877765
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.8e-11 Score=98.36 Aligned_cols=114 Identities=26% Similarity=0.233 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+.++.+++.|.+++++.+..++..|.+++..++..+..+.+.|++|.|+.+|.++++.++..|+++|.||+.+.+..+.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 34688999999999999999999999999998889999999999999999999999999999999999999998755677
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhh
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLS 184 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls 184 (429)
.+++.|+++.|+.+++..+.+.++.++.+|.+|+
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 7889999999999999888999999999999987
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.5e-10 Score=105.49 Aligned_cols=263 Identities=11% Similarity=0.056 Sum_probs=186.9
Q ss_pred HHHHHHhccc-cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHH
Q 014196 17 IRQFIQSKSA-RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKE 95 (429)
Q Consensus 17 Ie~W~~~g~~-~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~ 95 (429)
+|-.|.+|.+ .|..+|...---+|...|.......... + +...++.+...+.++++..+..|+..
T Consensus 12 ~~~~~~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~---~-----------~~~~~~~l~~ll~~~d~~vR~~A~~a 77 (280)
T PRK09687 12 KEYSLYSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLR---G-----------GQDVFRLAIELCSSKNPIERDIGADI 77 (280)
T ss_pred HHHHHHHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhc---C-----------cchHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777766 6676665544457777766666555433 1 13346677777788899999999999
Q ss_pred HHHHhhhchHHHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHH
Q 014196 96 IEKLAKEDVKIKKLMAELGVIQMLVSM-VSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRH 174 (429)
Q Consensus 96 L~~La~~~~~~r~~i~~~G~i~~Lv~l-L~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~ 174 (429)
|..+..... . ..-+++.|..+ ++++++.++..|+.+|+++.... .+. ...+++.+...+...+..+|.
T Consensus 78 Lg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~----~~~a~~~l~~~~~D~~~~VR~ 146 (280)
T PRK09687 78 LSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKN-PLY----SPKIVEQSQITAFDKSTNVRF 146 (280)
T ss_pred HHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-ccc----chHHHHHHHHHhhCCCHHHHH
Confidence 999864321 1 12347788877 67789999999999999986543 111 111344455666677788888
Q ss_pred HHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-c
Q 014196 175 EFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-R 253 (429)
Q Consensus 175 ~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~ 253 (429)
.++.+|..+. +..+++.|+.+|.+.+. .++..|+.+|.++.... ..+++.|+.+|.|.+ .
T Consensus 147 ~a~~aLg~~~----------~~~ai~~L~~~L~d~~~-~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D~~~~ 207 (280)
T PRK09687 147 AVAFALSVIN----------DEAAIPLLINLLKDPNG-DVRNWAAFALNSNKYDN--------PDIREAFVAMLQDKNEE 207 (280)
T ss_pred HHHHHHhccC----------CHHHHHHHHHHhcCCCH-HHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcCCChH
Confidence 8888885443 44579999999998887 79999999999883222 256788999998876 8
Q ss_pred hHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh
Q 014196 254 LSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL 333 (429)
Q Consensus 254 ~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~ 333 (429)
++..|+..|..+-. + . +++.|++.|. ++. .+..++.+|..+.. + -++|.|..++.
T Consensus 208 VR~~A~~aLg~~~~-~---------~-av~~Li~~L~-~~~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~ 262 (280)
T PRK09687 208 IRIEAIIGLALRKD-K---------R-VLSVLIKELK-KGT--VGDLIIEAAGELGD--K---------TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHHHccCC-h---------h-HHHHHHHHHc-CCc--hHHHHHHHHHhcCC--H---------hHHHHHHHHHh
Confidence 88888888877422 1 2 3458999997 444 45667777776543 2 36899999997
Q ss_pred -cCCHHHHHHHHHHHH
Q 014196 334 -LGSPLAQRRASKLLQ 348 (429)
Q Consensus 334 -~~~~~~k~~A~~lL~ 348 (429)
..+.+++.+|.+.|.
T Consensus 263 ~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 263 KFDDNEIITKAIDKLK 278 (280)
T ss_pred hCCChhHHHHHHHHHh
Confidence 678999999998875
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.9e-10 Score=105.69 Aligned_cols=253 Identities=10% Similarity=0.025 Sum_probs=183.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
+..|+..|.+.+..++..|++.|..+-. ..+++.+..++.++|+.+|..|+++|..|..... .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~----- 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C----- 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----
Confidence 6788999999999999999999987752 2347788899999999999999999999865431 1
Q ss_pred hcCccchhhhh-ccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh
Q 014196 154 EAGILTKLPKN-VDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA 232 (429)
Q Consensus 154 ~~G~i~~Lv~l-L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~ 232 (429)
...+++.|..+ ++..+..+|..++.+|.++....... ...+++.|...+.+.+. .++..++.+|.++.
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~-~VR~~a~~aLg~~~------ 156 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKST-NVRFAVAFALSVIN------ 156 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCH-HHHHHHHHHHhccC------
Confidence 22345666665 56777889999999999986432111 22356677777777776 79999999996553
Q ss_pred hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC
Q 014196 233 RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ 311 (429)
Q Consensus 233 ~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~ 311 (429)
...+++.|+.+|.|++ .++..|+..|..+.... ..+.+.|+..|. +.+..++..|+.+|..+-
T Consensus 157 ----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~---------~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~-- 220 (280)
T PRK09687 157 ----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN---------PDIREAFVAMLQ-DKNEEIRIEAIIGLALRK-- 220 (280)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC---------HHHHHHHHHHhc-CCChHHHHHHHHHHHccC--
Confidence 2347899999999886 88999999999873211 123347899998 788999999999887642
Q ss_pred CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccccccCCCCChhhhHHHHHHHHH
Q 014196 312 SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRRVSIGSPVSPREAQEGKKMMKN 389 (429)
Q Consensus 312 ~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~ 389 (429)
++ -++|.|+..+.++. .+..|+..|+.+++.. +.|.+.+. .....+.+.+.++..++++
T Consensus 221 ~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~-------a~p~L~~l-~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 221 DK---------RVLSVLIKELKKGT--VGDLIIEAAGELGDKT-------LLPVLDTL-LYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCHh-------HHHHHHHH-HhhCCChhHHHHHHHHHhc
Confidence 22 46899999998876 5667888888887632 12222222 1123366777888877765
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.1e-09 Score=101.77 Aligned_cols=280 Identities=11% Similarity=0.080 Sum_probs=203.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC----CC---HHHHHHHHHHHHHhcc
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST----EV---IGRRRAAIKALIQLAN 143 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s----~~---~~~~~~A~~aL~nLa~ 143 (429)
.+.+..|++...+++.++-.+..++|.++|..+.++|..+.+.||-..+++.|+. ++ .+....+...|.|...
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 4556677777777778888899999999999999999999999998888888765 23 2445566788999999
Q ss_pred CCCchHHHHHhcCccchhhhhccCCC--HHHHHHHHHHHHHhhccC-C-CccccccCCcHHHHHHhhhcCCcHHHHHHHH
Q 014196 144 GTYTNKAIMVEAGILTKLPKNVDAVD--ESTRHEFGELLLSLSSLA-N-THIPLSSSEILPFLVGILESGSSVETKELCI 219 (429)
Q Consensus 144 ~~~~nk~~iv~~G~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~-~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~ 219 (429)
++++.+..+++.|+++.|..++.-.- .+..+......++|.+.. + ..+...+....-.|++++.+...+...+-++
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 88777999999999999988875322 233333433444443322 2 2344456777888999988754445677788
Q ss_pred HHHHHhccCCCChhHHHhcCcHHHHHHhccCC-c--------chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcc
Q 014196 220 GALYNLSAVLDNARPMVSNGVVHTLLKLCSMK-E--------RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~-~--------~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
..|...+.++.-+-.++++|.+..+++++... + .....++....-|...+|.-+..-..|.+...+++.+.
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 99999999999999999999999999998752 1 12223333333334455655556554545556666766
Q ss_pred cCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-----CCHHHHHHHHHHHHHHHh
Q 014196 291 WEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL-----GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 291 ~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-----~~~~~k~~A~~lL~~l~~ 352 (429)
+.+...+..++-+++|+++.+ .++.-+++.|.+..|++++-. |+.+.+..+...|++|-=
T Consensus 326 -S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 326 -SDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred -CCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 566677788888899998764 567778999999999998854 466777777789998874
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-08 Score=99.40 Aligned_cols=277 Identities=15% Similarity=0.042 Sum_probs=195.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE-VIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
...++..|..++...+..|+..|..+...++.+.......-.+..|...|.+. +...+.-|+.+|..|...+ ..|..+
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f 181 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAF 181 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHH
Confidence 56677788888888999999999988765543211111111334556666654 4677888889999998887 589999
Q ss_pred HhcCccchhhhhccCC--CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC-
Q 014196 153 VEAGILTKLPKNVDAV--DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL- 229 (429)
Q Consensus 153 v~~G~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~- 229 (429)
++.++++.|+.+|+.. ....+.++.-++|-||..++........+.|+.|+++++....+++.+-++.+|.||...+
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~ 261 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRV 261 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Confidence 9999999999999753 3567788889999999887755566678999999999998877788899999999998743
Q ss_pred ------CChhHHHhcCcHHHHHHhccCC--c-chHHH---HHHHH----HHhhCCh------------------------
Q 014196 230 ------DNARPMVSNGVVHTLLKLCSMK--E-RLSEK---SLATL----GNLVVTS------------------------ 269 (429)
Q Consensus 230 ------~n~~~iv~~G~v~~Lv~lL~~~--~-~~~~~---a~~~L----~~La~~~------------------------ 269 (429)
.....|++.|..+.+-.+.... | ++.+. .-..| ..++..+
T Consensus 262 ~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~ 341 (429)
T cd00256 262 DREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR 341 (429)
T ss_pred ccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence 2335677777655444443321 2 22221 11111 1222212
Q ss_pred hcHHHHhcC-CCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 270 TGKKAMEDS-PLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 270 e~~~~i~~~-~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
|+...+.+. ..++..|+++|..+.++....-|+.=++.++.+-|..+..+-+-|+=..+.+++.+.++.++..|...++
T Consensus 342 EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 342 ENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 244444332 3345678888864456666667777788888877888888888999999999999999999999998877
Q ss_pred HHH
Q 014196 349 WFK 351 (429)
Q Consensus 349 ~l~ 351 (429)
.+-
T Consensus 422 klm 424 (429)
T cd00256 422 KLM 424 (429)
T ss_pred HHH
Confidence 653
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=99.05 Aligned_cols=249 Identities=18% Similarity=0.134 Sum_probs=163.5
Q ss_pred HHHHHHHhhhchHHHHHHHhc---CcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCCchHHHHHh------cCccchh
Q 014196 93 AKEIEKLAKEDVKIKKLMAEL---GVIQMLVSMVST--EVIGRRRAAIKALIQLANGTYTNKAIMVE------AGILTKL 161 (429)
Q Consensus 93 a~~L~~La~~~~~~r~~i~~~---G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~nk~~iv~------~G~i~~L 161 (429)
+..++.+-+..++.|..+.+. +....++.+|.. .+.++.++.+..+..+..+++.....+.+ .....++
T Consensus 31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~f 110 (312)
T PF03224_consen 31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPF 110 (312)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHH
Confidence 344445544444455445542 345666777754 57899999999999988887544444443 1256778
Q ss_pred hhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCc---HHHHHHHHHHHHHhccCCCChhHHHhc
Q 014196 162 PKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSS---VETKELCIGALYNLSAVLDNARPMVSN 238 (429)
Q Consensus 162 v~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~~ 238 (429)
++++...+...+..++.+|..|....+....-...+.++.+++.|.+... .+.+..|+.+|.+|...++.+..+.+.
T Consensus 111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~ 190 (312)
T PF03224_consen 111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS 190 (312)
T ss_dssp HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence 88888888888888888999888665444433234678889888876321 145578999999999999999999999
Q ss_pred CcHHHHHHhc------cCC-c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 239 GVVHTLLKLC------SMK-E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 239 G~v~~Lv~lL------~~~-~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
|+++.++.+| ... + .++-+++-+++.|+-+++....+.+.+ +++.|++++.....+++..-++++|.|+..
T Consensus 191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~ 269 (312)
T PF03224_consen 191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLAILRNLLS 269 (312)
T ss_dssp HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 9999999999 222 2 778889999999999999999999887 667999999866788899999999999998
Q ss_pred CCH-HHHHHHHhCCchHHHHHHhhc--CCHHHHHH
Q 014196 311 QSS-EQRDKMAKSGIVHVSLQLALL--GSPLAQRR 342 (429)
Q Consensus 311 ~~~-~~~~~i~~~G~v~~L~~ll~~--~~~~~k~~ 342 (429)
.++ .....|+..|+++.+-.+... ++++..+-
T Consensus 270 ~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 270 KAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp SSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred ccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 654 388889988865555444443 25555443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.4e-10 Score=84.70 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=42.3
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHh-ccc--cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQS-KSA--RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~-g~~--~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|..|+.. -.|+|||| |++||.. +.. .|++++...+|+||..||+.|++|+.+|
T Consensus 14 M~dPVi~-~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~ 71 (73)
T PF04564_consen 14 MRDPVIL-PSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAEN 71 (73)
T ss_dssp -SSEEEE-TTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHC
T ss_pred hhCceeC-CcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHc
Confidence 5567665 45699999 9999998 443 9999999999999999999999999877
|
Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A .... |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.3e-07 Score=100.92 Aligned_cols=255 Identities=14% Similarity=0.045 Sum_probs=132.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
++.|+..|.++++.+|..|+..|..+.. .++++.|+..|+++++.++..|+.+|..+..... .
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-~----- 685 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-P----- 685 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-c-----
Confidence 6677788888888888888877776542 2346777777777777777777777766632211 0
Q ss_pred hcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC---------Ccc--------ccccCCcHHHHHHhhhcCCcHHHHH
Q 014196 154 EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN---------THI--------PLSSSEILPFLVGILESGSSVETKE 216 (429)
Q Consensus 154 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~---------~~~--------~i~~~g~i~~Lv~lL~~~~~~~~~~ 216 (429)
.+.|...|.+.+..+|..++.+|..+...+. ... .++.-+..+.|..++.+.+. .++.
T Consensus 686 ----~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~-~VR~ 760 (897)
T PRK13800 686 ----APALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENR-EVRI 760 (897)
T ss_pred ----hHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCH-HHHH
Confidence 1123334444445555544444443321000 000 00000112334444444443 4455
Q ss_pred HHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCCh
Q 014196 217 LCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKP 295 (429)
Q Consensus 217 ~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~ 295 (429)
.++.+|..+... +.+.++.|..++.|.+ .++..|+..|..+-..+ .++..++..|. +.++
T Consensus 761 ~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~-d~d~ 821 (897)
T PRK13800 761 AVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALR-ASAW 821 (897)
T ss_pred HHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhc-CCCh
Confidence 555555444321 1122555666666554 55555555555442210 11123555555 4556
Q ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccccccCCCC
Q 014196 296 KCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRRVSIGSPV 375 (429)
Q Consensus 296 ~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (429)
.++..|+.+|..+.. ..+++.|+.++.+.+..++..|++.|..+..+++. .+.+. ....++
T Consensus 822 ~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a------~~~L~--~al~D~ 882 (897)
T PRK13800 822 QVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAA------RDALT--TALTDS 882 (897)
T ss_pred HHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHH------HHHHH--HHHhCC
Confidence 666666666654421 12457888888888888888888887776322210 00010 122244
Q ss_pred ChhhhHHHHHHHH
Q 014196 376 SPREAQEGKKMMK 388 (429)
Q Consensus 376 ~~~~~~~~k~~l~ 388 (429)
+.+.+..+.+||.
T Consensus 883 d~~Vr~~A~~aL~ 895 (897)
T PRK13800 883 DADVRAYARRALA 895 (897)
T ss_pred CHHHHHHHHHHHh
Confidence 6667777777764
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-07 Score=96.72 Aligned_cols=258 Identities=13% Similarity=0.082 Sum_probs=191.7
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhh-hchHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCCCc
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAK-EDVKIKKLMAELGVIQMLVSMVSTE-VIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~ 147 (429)
...+.+|++.|+.. ++..|.+|+.+|..+-. .+++.-.-+--.-.||.||.+|+.. +.++...|+.||.+|+.--++
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34688999999866 88899999999987543 2333222333345699999999875 689999999999999977666
Q ss_pred hHHHHHhcCccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 148 NKAIMVEAGILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
....+|+.++||.|+.-|..-+ .++-+.+..+|..||. .+-..|-.+|++-..+..|.--+. .+++.|+.+-.|.|
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR--~H~~AiL~AG~l~a~LsylDFFSi-~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR--RHPKAILQAGALSAVLSYLDFFSI-HAQRVALAIAANCC 322 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh--hccHHHHhcccHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 7788889999999987665433 6667778888999885 344566689999999999988776 68999999999999
Q ss_pred c--CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC----ChhcHHHHhcCCCChHHHHHhcccCC---Chh
Q 014196 227 A--VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV----TSTGKKAMEDSPLVPESLIEILTWEE---KPK 296 (429)
Q Consensus 227 ~--~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~----~~e~~~~i~~~~~i~~~Lv~~L~~~~---s~~ 296 (429)
. .++.-..++ +++|.|-.+|...+ ...|.++-++..++. .++--+.+..++-+ ....++|.... +..
T Consensus 323 ksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi-~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 323 KSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLI-TNIQQLLSVTPTILSNG 399 (1051)
T ss_pred hcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHH-HHHHHHHhcCccccccc
Confidence 7 344445555 47999999998665 777887777776664 35556677776655 46777775211 112
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc
Q 014196 297 CQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL 334 (429)
Q Consensus 297 ~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~ 334 (429)
..---+..|..+|.+++-....+.+.|+...|..++..
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 23344556667777888888889999999999998875
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.7e-07 Score=90.04 Aligned_cols=275 Identities=18% Similarity=0.156 Sum_probs=191.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHH-------HHHHHHHHHHHhcc
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIG-------RRRAAIKALIQLAN 143 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~-------~~~~A~~aL~nLa~ 143 (429)
...-.+++.|.+.-.+...+.++++-.-+.+++..+-.+++.|.++.++++++. .+.. .-..++....-|..
T Consensus 223 sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt 302 (604)
T KOG4500|consen 223 SLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT 302 (604)
T ss_pred hHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc
Confidence 344556666665533444556666666556677889999999999999999976 2211 11222222333455
Q ss_pred CCCchHHHHHhcC-ccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhc-----CCcHHHHHH
Q 014196 144 GTYTNKAIMVEAG-ILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILES-----GSSVETKEL 217 (429)
Q Consensus 144 ~~~~nk~~iv~~G-~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~~ 217 (429)
+++ .-+.+...| .+..++..+.+.+....-..+.++.|++..|+++..+.+.|.+..|+.+|.. |+. +.+.+
T Consensus 303 GDe-SMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV-~~qhA 380 (604)
T KOG4500|consen 303 GDE-SMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNV-ERQHA 380 (604)
T ss_pred Cch-HHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccc-hhHHH
Confidence 653 555565555 7888888888888777777788999999999999999999999999998864 444 67888
Q ss_pred HHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC-cchHHHHHHHHHHhhCChh-cHHHHhcCCCChHHHHHhcccCCCh
Q 014196 218 CIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK-ERLSEKSLATLGNLVVTST-GKKAMEDSPLVPESLIEILTWEEKP 295 (429)
Q Consensus 218 A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~a~~~L~~La~~~e-~~~~i~~~~~i~~~Lv~~L~~~~s~ 295 (429)
++.||.||...-.|+..++.+|++..++..++-. ++++-+-+++|.-+....+ ..-...++...+..||+ |+.++
T Consensus 381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~---Wsks~ 457 (604)
T KOG4500|consen 381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD---WSKSP 457 (604)
T ss_pred HHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH---hhhCC
Confidence 9999999999999999999999999999998754 3888888888887665433 33344444333334444 43333
Q ss_pred h---HHHHHHHHHHHHhhC--CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 296 K---CQELSAYILMILAHQ--SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 296 ~---~~e~A~~~L~~L~~~--~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
+ ..-..-..|..+-.+ ..+....+.+.|+|..++.++....-..+..|.-.|..+.
T Consensus 458 D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 458 DFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred ccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 2 223334445555554 3456777888899999999888776666777766554444
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.2e-07 Score=91.87 Aligned_cols=273 Identities=14% Similarity=0.137 Sum_probs=195.9
Q ss_pred CChhhHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhc
Q 014196 66 IEEDDCVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST--EVIGRRRAAIKALIQLA 142 (429)
Q Consensus 66 ~~~~~~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa 142 (429)
......+.|+.|+.++.+. -.+.|+.|+..|..+++ +.|..+... |+++|+..|.. .|+++...++.++.++.
T Consensus 16 k~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 16 KQQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred ccccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 3344667899999999876 46899999999999997 466666555 58999999986 48999999999999998
Q ss_pred cCCC-----ch-H------HHHH-----hcCccchhhhhccCCCHHHHHHHHHHHHHhhccC--CCcccc-ccCCcHHHH
Q 014196 143 NGTY-----TN-K------AIMV-----EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA--NTHIPL-SSSEILPFL 202 (429)
Q Consensus 143 ~~~~-----~n-k------~~iv-----~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i-~~~g~i~~L 202 (429)
.+++ ++ + ..|. ..+-|..++..+..-+..+|..+..+|.+|-..- +.+..+ ...-+|..|
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 7763 11 2 1222 3577888888887777888888888888776443 333333 367789999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh-cCcHHHHHHhccCC-----cchHHHHHHHHHHhhC-ChhcHHHH
Q 014196 203 VGILESGSSVETKELCIGALYNLSAVLDNARPMVS-NGVVHTLLKLCSMK-----ERLSEKSLATLGNLVV-TSTGKKAM 275 (429)
Q Consensus 203 v~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-~G~v~~Lv~lL~~~-----~~~~~~a~~~L~~La~-~~e~~~~i 275 (429)
+.+|.+.-. .+|..++-.|..|.....+..++|. .++|..|..++... +-+++.|+..|-||-+ +..++..+
T Consensus 172 mdlL~DsrE-~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 172 MDLLRDSRE-PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred HHHHhhhhh-hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence 999988765 5889999999999998888877776 59999999999743 2689999999999998 45566666
Q ss_pred hcCCCChHHHHHhcccC--CChh------HH----HHHHHHHHHHhh-C-C----HHHHHHHHhCCchHHHHHHhhcC--
Q 014196 276 EDSPLVPESLIEILTWE--EKPK------CQ----ELSAYILMILAH-Q-S----SEQRDKMAKSGIVHVSLQLALLG-- 335 (429)
Q Consensus 276 ~~~~~i~~~Lv~~L~~~--~s~~------~~----e~A~~~L~~L~~-~-~----~~~~~~i~~~G~v~~L~~ll~~~-- 335 (429)
.+ |+-+|.|.++|.+. ++.. -+ -.+..++..+.. + . ..+.++|...+++..|+.++-+.
T Consensus 251 rE-~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~v 329 (970)
T KOG0946|consen 251 RE-GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGV 329 (970)
T ss_pred hc-cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCC
Confidence 66 44456899888752 2210 11 123333333332 1 1 13456788889999999887764
Q ss_pred CHHHHHHHH
Q 014196 336 SPLAQRRAS 344 (429)
Q Consensus 336 ~~~~k~~A~ 344 (429)
..+++..+.
T Consensus 330 p~dIltesi 338 (970)
T KOG0946|consen 330 PADILTESI 338 (970)
T ss_pred cHhHHHHHH
Confidence 344554444
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-08 Score=95.37 Aligned_cols=176 Identities=17% Similarity=0.118 Sum_probs=134.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC----CCHHHHHHHHHHHHHhccCCCch
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST----EVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s----~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
.+..+++.+..+|...+..|+..|..+...++....... .+.++.+++.|.+ ++.+.+..|+.+|.+|.... ..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hh
Confidence 577888888888999999999999998876654333322 5567888888775 45667899999999999886 69
Q ss_pred HHHHHhcCccchhhhhc-----cC--CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHH
Q 014196 149 KAIMVEAGILTKLPKNV-----DA--VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGA 221 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL-----~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 221 (429)
|..+++.|+++.++.++ .. .....+.++..++|-||..++....+...+.||.|+.+++....+++.+-++.+
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~ 263 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAI 263 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999999999999 22 225667788889999999888877888888999999999988777899999999
Q ss_pred HHHhccCCC--ChhHHHhcCcHHHHHHhccC
Q 014196 222 LYNLSAVLD--NARPMVSNGVVHTLLKLCSM 250 (429)
Q Consensus 222 L~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~ 250 (429)
|.||..... +...|+..|+.+.+-.+...
T Consensus 264 l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 999998766 77889988877766666543
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-06 Score=96.84 Aligned_cols=225 Identities=14% Similarity=0.086 Sum_probs=132.1
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 114 G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
+.++.|+.+|.++|+.+|..|+.+|..+. ..++++.|+..|...+..+|..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 45789999999999999999999998764 2345677888898888999998888888774211
Q ss_pred ccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-----
Q 014196 194 SSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV----- 267 (429)
Q Consensus 194 ~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~----- 267 (429)
...+.|...|.+.++ .++..|+.+|..+.. +-...++..|.|.+ .++..|+.+|..+-.
T Consensus 684 ---~~~~~L~~~L~~~d~-~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~ 748 (897)
T PRK13800 684 ---PPAPALRDHLGSPDP-VVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVDDVESVA 748 (897)
T ss_pred ---CchHHHHHHhcCCCH-HHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHH
Confidence 123567777777665 677777777766542 11234455555554 455555555543210
Q ss_pred ------ChhcHHHHhc--------CCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh
Q 014196 268 ------TSTGKKAMED--------SPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL 333 (429)
Q Consensus 268 ------~~e~~~~i~~--------~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~ 333 (429)
+++.|..... .....+.|..++. +.++.++..|+.+|..+... + .+++.|+..+.
T Consensus 749 ~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~-D~d~~VR~aA~~aLg~~g~~-~---------~~~~~l~~aL~ 817 (897)
T PRK13800 749 GAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG-DPDPLVRAAALAALAELGCP-P---------DDVAAATAALR 817 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc-CCCHHHHHHHHHHHHhcCCc-c---------hhHHHHHHHhc
Confidence 0111111100 0011235555555 45566666666666554221 0 11245666677
Q ss_pred cCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccccccCCCCChhhhHHHHHHHHHH
Q 014196 334 LGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRRVSIGSPVSPREAQEGKKMMKNL 390 (429)
Q Consensus 334 ~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~ 390 (429)
+.+..++..|++.|..+.... +.+.+ +....+.+.+.+..+-++|-.+
T Consensus 818 d~d~~VR~~Aa~aL~~l~~~~-------a~~~L--~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 818 ASAWQVRQGAARALAGAAADV-------AVPAL--VEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred CCChHHHHHHHHHHHhccccc-------hHHHH--HHHhcCCCHHHHHHHHHHHhcc
Confidence 777777888887776654311 00001 1222344677788888877664
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-06 Score=81.81 Aligned_cols=184 Identities=21% Similarity=0.171 Sum_probs=138.8
Q ss_pred CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhh
Q 014196 83 FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLP 162 (429)
Q Consensus 83 ~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv 162 (429)
+.+.+.+..|...|..++. +-+|...+...|+..+|+..|++.+..+|+.|+++|..++.+++...+.+.+.|+++.|.
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4478999999999999985 668999999999999999999999999999999999999999987788999999999999
Q ss_pred hhccCCC-HHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcC-CcHHHHHHHHHHHHHhccCC-CChhHHHhc
Q 014196 163 KNVDAVD-ESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESG-SSVETKELCIGALYNLSAVL-DNARPMVSN 238 (429)
Q Consensus 163 ~lL~~~~-~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~ 238 (429)
..+.+.+ ...+..|..++..|-.+. .....+-..++...|..++.++ .....++.++..+.+|.... .+...+-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 9997554 445566666777666443 2334444667799999999985 33368888888888887643 344434444
Q ss_pred CcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 239 GVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 239 G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
|....+..+...-+ ++.+.++.++..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 55555555554333 777777776654443
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-06 Score=72.35 Aligned_cols=116 Identities=21% Similarity=0.117 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 70 DCVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
-.+.++.||...+.. +.+.|.+...-|.++|- ||-|-..+.+..+++..|+.|..+|..+.+.++..|+|++.+. .|
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-~n 91 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-TN 91 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-HH
Confidence 467789999988754 78888888888999985 7899999999999999999999999999999999999999997 79
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA 187 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~ 187 (429)
+..|++++++|.++.++.++...+...++.++..|+.-.
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999888888888888999888544
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-05 Score=82.37 Aligned_cols=276 Identities=16% Similarity=0.169 Sum_probs=175.2
Q ss_pred ccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHH
Q 014196 38 EKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQ 117 (429)
Q Consensus 38 ~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~ 117 (429)
.+|+.+|++..-...... ... .+.-.-.+..+.+.|.++++..+..|+..|.++. +++....+ ++
T Consensus 53 s~~~~~Krl~yl~l~~~~------~~~--~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l-----~~ 117 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYL------HED--PELLILIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPL-----IP 117 (526)
T ss_dssp SSSHHHHHHHHHHHHHHT------TTS--HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHH-----HH
T ss_pred CCCHHHHHHHHHHHHHHh------hcc--hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHH-----HH
Confidence 699999999999887551 000 1122345678888899999999999999999987 44444443 78
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCC
Q 014196 118 MLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE 197 (429)
Q Consensus 118 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g 197 (429)
.+..+|.++++.+|..|+.++..+...+++ .+-.. .++.+..++.+.+..++..|..++..+...+ +... .
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~--~~~~---~ 188 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCND--DSYK---S 188 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTH--HHHT---T
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCc--chhh---h
Confidence 899999999999999999999999876532 22233 6788899998888888888888888881111 1100 3
Q ss_pred cHHHHHHh----hhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcH
Q 014196 198 ILPFLVGI----LESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGK 272 (429)
Q Consensus 198 ~i~~Lv~l----L~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~ 272 (429)
.++.+++. +...++ -.+..++..|..++........ ....++.+..++.+.. .++-.|+.++..+...+...
T Consensus 189 ~~~~~~~~L~~~l~~~~~-~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~ 265 (526)
T PF01602_consen 189 LIPKLIRILCQLLSDPDP-WLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELL 265 (526)
T ss_dssp HHHHHHHHHHHHHTCCSH-HHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHH
T ss_pred hHHHHHHHhhhcccccch-HHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHH
Confidence 34444444 445555 4666777777777654322210 0445666777666543 66667777777766655422
Q ss_pred HHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh-cCCHHHHHHHHHHHHHHH
Q 014196 273 KAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL-LGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 273 ~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~-~~~~~~k~~A~~lL~~l~ 351 (429)
..+ + +.|++++. +.++..+-.++..|..++...+ ..+. . ....+..+. +.+..+|.+|..+|..+.
T Consensus 266 ~~~-----~-~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~----~~v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 266 QKA-----I-NPLIKLLS-SSDPNVRYIALDSLSQLAQSNP----PAVF-N-QSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp HHH-----H-HHHHHHHT-SSSHHHHHHHHHHHHHHCCHCH----HHHG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred Hhh-----H-HHHHHHhh-cccchhehhHHHHHHHhhcccc----hhhh-h-hhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 222 2 36777776 6666677777777777765431 1222 2 122233333 556677777777766666
Q ss_pred hc
Q 014196 352 DE 353 (429)
Q Consensus 352 ~~ 353 (429)
+.
T Consensus 333 ~~ 334 (526)
T PF01602_consen 333 NE 334 (526)
T ss_dssp -H
T ss_pred cc
Confidence 53
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.5e-07 Score=61.74 Aligned_cols=41 Identities=27% Similarity=0.197 Sum_probs=38.5
Q ss_pred chHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 014196 103 DVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 103 ~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 143 (429)
++++++.+++.|+||+|+.+|.++++++++.|+|+|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-06 Score=79.79 Aligned_cols=183 Identities=19% Similarity=0.196 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHH
Q 014196 168 VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLK 246 (429)
Q Consensus 168 ~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~ 246 (429)
.+.+.++.|..-|..+..+-+|...+...|+..+|+..+++.++ .+|+.|+++|...+.+ +.....+.+.|+.+.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~-~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA-ELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH-HHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 34667777777777787776888888899999999999999888 8999999999998874 556688999999999999
Q ss_pred hccCCc--chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccC-CChhHHHHHHHHHHHHhhCCHHHHHHHHhC
Q 014196 247 LCSMKE--RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWE-EKPKCQELSAYILMILAHQSSEQRDKMAKS 322 (429)
Q Consensus 247 lL~~~~--~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~-~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~ 322 (429)
.|...+ ..+.+|+.++..|.. ++.+...+...+|.. .|.++|... .+...+..++..+..+..........+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~-~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQ-VLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHH-HHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 998543 777899999998887 688999999999976 999999821 567788888888888887665666666667
Q ss_pred CchHHHHHHhhcCCHHHHHHHHH-HHHHHHh
Q 014196 323 GIVHVSLQLALLGSPLAQRRASK-LLQWFKD 352 (429)
Q Consensus 323 G~v~~L~~ll~~~~~~~k~~A~~-lL~~l~~ 352 (429)
|....+..+.......+++.|.. +|..+.+
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 76666677777777888888886 5666655
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.3e-06 Score=88.46 Aligned_cols=213 Identities=14% Similarity=0.149 Sum_probs=164.0
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCch
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
...+|.||..|+.. +.+....|+++|..|+.--|..-..+++.|+||.|+.-|.. .-.++-|.++.||-.|+....
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-- 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-- 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--
Confidence 45689999999866 78999999999999998888888999999999999987654 567899999999999998753
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC--CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA--NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
..|.++|++...+..|.......++.|.++..|+|..- +.-..+ ..++|.|..+|+..+. +..+.++.++..++
T Consensus 288 -~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~-k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 288 -KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDK-KPIESVCICLTRIA 363 (1051)
T ss_pred -HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccc-hhHHHHHHHHHHHH
Confidence 67889999988888887767788888888888888542 111222 3579999999999887 78888999998887
Q ss_pred c---CCCCh-hHHHhcCcHHHHHHhccCCc-----chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcc
Q 014196 227 A---VLDNA-RPMVSNGVVHTLLKLCSMKE-----RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 227 ~---~~~n~-~~iv~~G~v~~Lv~lL~~~~-----~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
. +..++ ..+...|.|.....||.-.+ .+--..+..|..+|. ++..+....+.+ |...|..+|.
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~-I~~~L~~il~ 436 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLD-IADTLKRILQ 436 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhh-HHHHHHHHHh
Confidence 4 34444 77888899999999886431 444445566667776 477777666633 4346666654
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-05 Score=77.84 Aligned_cols=261 Identities=14% Similarity=0.132 Sum_probs=175.3
Q ss_pred HHHHHHHHHhcCCCHHH--HHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCch
Q 014196 72 VLLQKSVKRLHFGSWEE--KEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~--~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
+.+..|++++..++.+. +.+|+..|..+.. .+||..++.-| ...++.+-+. ..++.+...+..|.++-.|+++.
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet 256 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEET 256 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHH
Confidence 45778999999987654 7889999988764 46888888866 4444444333 45788888999999999998777
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC--CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA--NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
.+.++++|+++.++.-....++...+++|.+|.|++.+. ..+..|.+..+-+-|..+-.+.+. -++-+||.+.+-|+
T Consensus 257 ~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDe-l~R~~AClAV~vla 335 (832)
T KOG3678|consen 257 CQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDE-LLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHH-HHHHHHHHHHhhhh
Confidence 889999999998877777777889999999999998765 455566665566666666666654 57889999999999
Q ss_pred cCCCChhHHHhcCcH---HHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 227 AVLDNARPMVSNGVV---HTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 227 ~~~~n~~~iv~~G~v---~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
.+.+.-..+...|-+ .+++..+. +..+.+.+- ....|+. -..+ ..||.+|. +. .....+++
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~D-P~~FARD~h-------d~aQG~~----~d~L-qRLvPlLd-S~--R~EAq~i~ 399 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLD-PGRFARDAH-------DYAQGRG----PDDL-QRLVPLLD-SN--RLEAQCIG 399 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccC-cchhhhhhh-------hhhccCC----hHHH-HHhhhhhh-cc--hhhhhhhH
Confidence 877666666666654 34444332 223333211 0111110 0112 25666775 22 22333455
Q ss_pred HHHHHhh----CCHHHH-HHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 304 ILMILAH----QSSEQR-DKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 304 ~L~~L~~----~~~~~~-~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
+.+ +|. .+.+.. +..-+-|+|+.|-++..+.+..+-+-|...|..+++.
T Consensus 400 AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 400 AFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 543 453 223333 3444469999999999876666667788899999874
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6e-06 Score=68.66 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=110.8
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHH
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKK 273 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~ 273 (429)
..+.+..||.-.......++|+....-|.|.+-++-|-..+.+..++...++.|...+ .+++.+++.|+|+|-.+.+.+
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence 3456777777776655558999999999999999999999999999999999998775 889999999999999999999
Q ss_pred HHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHH
Q 014196 274 AMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQ 330 (429)
Q Consensus 274 ~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ 330 (429)
.|++++|+| .++..++ +......-.|+..|+.||-.....+..+..--++..+.+
T Consensus 94 ~I~ea~g~p-lii~~ls-sp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 94 FIREALGLP-LIIFVLS-SPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred HHHHhcCCc-eEEeecC-CChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 999999997 7888887 566667778889999998777778888876444444433
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.5e-05 Score=76.82 Aligned_cols=315 Identities=14% Similarity=0.121 Sum_probs=195.1
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 72 VLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAEL-----GVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~-----G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
..+..++..|... +.+...-.+.-+-.+...++..-..+.+. ....+++.+|..+|.-++..|...|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4456666666643 44555556666666776676655566653 46778888999999999999999999987553
Q ss_pred CchHHHHHhcCccchhhhhccCC-CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCC-cHHHHHHHHHHHH
Q 014196 146 YTNKAIMVEAGILTKLPKNVDAV-DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGS-SVETKELCIGALY 223 (429)
Q Consensus 146 ~~nk~~iv~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~~A~~aL~ 223 (429)
..+.......-.++-|...+.++ +...+..++..|..|-..+..|..+.+.++++.|+.+|+... ..+..-.++-++|
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 22211111001222334444443 255566677888898888889988888889999999998754 3478899999999
Q ss_pred HhccCCCChhHHHhcCcHHHHHHhccCC--cchHHHHHHHHHHhhCCh-------hcHHHHhcCCCChHHHHHhcccC--
Q 014196 224 NLSAVLDNARPMVSNGVVHTLLKLCSMK--ERLSEKSLATLGNLVVTS-------TGKKAMEDSPLVPESLIEILTWE-- 292 (429)
Q Consensus 224 nLs~~~~n~~~iv~~G~v~~Lv~lL~~~--~~~~~~a~~~L~~La~~~-------e~~~~i~~~~~i~~~Lv~~L~~~-- 292 (429)
-|+..++....+.+.|.|+.|++++++. +.+++-++++|.||...+ .....++.. +++ .+++.|...
T Consensus 213 lLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~-~l~-~~l~~L~~rk~ 290 (429)
T cd00256 213 LLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQC-KVL-KTLQSLEQRKY 290 (429)
T ss_pred HHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHc-ChH-HHHHHHhcCCC
Confidence 9999888777778889999999999876 489999999999999843 122345554 454 577766511
Q ss_pred CChhHHH---------------------HHHHHHH-----HHhhCC----HHHHHHHHhCC--chHHHHHHhhc-CCHHH
Q 014196 293 EKPKCQE---------------------LSAYILM-----ILAHQS----SEQRDKMAKSG--IVHVSLQLALL-GSPLA 339 (429)
Q Consensus 293 ~s~~~~e---------------------~A~~~L~-----~L~~~~----~~~~~~i~~~G--~v~~L~~ll~~-~~~~~ 339 (429)
++++..+ +...+.. .-.+.+ .++...+.+.+ ++..|+.++.. .++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 2333221 1111110 111222 24555555543 56777777753 35555
Q ss_pred HHHHHH-HHHHHHhccccCCCCCCCCCcc---cc-ccCCCCChhhhHHHHHHHHHHH
Q 014196 340 QRRASK-LLQWFKDERQAKMGPHSGPQTR---RV-SIGSPVSPREAQEGKKMMKNLV 391 (429)
Q Consensus 340 k~~A~~-lL~~l~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~k~~l~~~~ 391 (429)
..-|+. +-+..+..|.+|... -.++ .+ .......++.+.+|=++++.|+
T Consensus 371 laVAc~Dige~vr~~P~gr~i~---~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVV---EQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHH---HHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 666664 555555544432110 0111 11 2223336667777766666553
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-05 Score=80.71 Aligned_cols=253 Identities=17% Similarity=0.188 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
...++.+.+.|.++++.+|+.|+..+..+.+.+++. +... .++.|..+|.+.|+.++.+|+.++..+ ..+ .+.
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~--~~~ 185 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCN--DDS 185 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT--HHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccC--cch
Confidence 345677888888999999999999999999877652 3333 689999999999999999999999999 222 111
Q ss_pred HH-HhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 151 IM-VEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 151 ~i-v~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
.. .-...++.|..++...++-.+..+..+|..++........ ....++.+..++.+.+. .+.-.|+.++.++....
T Consensus 186 ~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~--~~~~i~~l~~~l~s~~~-~V~~e~~~~i~~l~~~~ 262 (526)
T PF01602_consen 186 YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD--KNRIIEPLLNLLQSSSP-SVVYEAIRLIIKLSPSP 262 (526)
T ss_dssp HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSSH
T ss_pred hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh--HHHHHHHHHHHhhcccc-HHHHHHHHHHHHhhcch
Confidence 11 1112333444444556666666666666655532211110 03456777777776555 56666777777666543
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMIL 308 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L 308 (429)
. .-..++++|+.+|.+++ .++--++..|..++... ...+. .. ...+..+..+.+...+..++.+|..+
T Consensus 263 ~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~-~~---~~~~~~l~~~~d~~Ir~~~l~lL~~l 331 (526)
T PF01602_consen 263 E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF-NQ---SLILFFLLYDDDPSIRKKALDLLYKL 331 (526)
T ss_dssp H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG-TH---HHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh-hh---hhhhheecCCCChhHHHHHHHHHhhc
Confidence 3 33456777777777665 56667777777776632 22222 11 12233333246667777777777777
Q ss_pred hhCCHHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHH
Q 014196 309 AHQSSEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFK 351 (429)
Q Consensus 309 ~~~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~ 351 (429)
+. +++... +++.|...+.. +++..++.+...+..+.
T Consensus 332 ~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la 368 (526)
T PF01602_consen 332 AN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLA 368 (526)
T ss_dssp ----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHH
T ss_pred cc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 64 333333 35555555533 35556666665444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >smart00504 Ubox Modified RING finger domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-06 Score=63.52 Aligned_cols=49 Identities=18% Similarity=0.102 Sum_probs=41.5
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhccc--cccCCCCCCCcccchhhHHHHHHH
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKSA--RRRQNEPNHNHEKSRTLKNINCQE 50 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~~--~T~~~L~~~~L~PN~~Lr~lI~~W 50 (429)
|..|+.. --|++|+| |++|+..+.. .|++++...+++||..||+.|++|
T Consensus 11 ~~~Pv~~-~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 11 MKDPVIL-PSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CCCCEEC-CCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 4456654 45899999 9999987544 999999888999999999999998
|
Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00052 Score=68.51 Aligned_cols=253 Identities=16% Similarity=0.133 Sum_probs=170.6
Q ss_pred HHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC--HH
Q 014196 94 KEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD--ES 171 (429)
Q Consensus 94 ~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~--~~ 171 (429)
..|-.+-++.+..|..+.-.-..+.+..++-+++.+++.+|..+++.+..+. ..-..+.+.+.--.++..|.... ..
T Consensus 5 N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ 83 (371)
T PF14664_consen 5 NDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDV 83 (371)
T ss_pred HHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChH
Confidence 3455555666666666655555666665666666999999999999999886 56777777765545566665332 44
Q ss_pred HHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC
Q 014196 172 TRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 172 ~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~ 251 (429)
.|++|...+..+....+....+ ..|.+..+|.+..+.+. ..+..|+.+|+.|+.. |-..++++|++..|++.+.++
T Consensus 84 ER~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D-~lr~~cletL~El~l~--~P~lv~~~gG~~~L~~~l~d~ 159 (371)
T PF14664_consen 84 EREQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDD-RLRRICLETLCELALL--NPELVAECGGIRVLLRALIDG 159 (371)
T ss_pred HHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHhh--CHHHHHHcCCHHHHHHHHHhc
Confidence 5778888777776554333333 56788999999998776 7999999999999974 345678899999999998876
Q ss_pred c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccC------CCh--hHHHHHHHHHHHHhhCCHHHHHHHHhC
Q 014196 252 E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWE------EKP--KCQELSAYILMILAHQSSEQRDKMAKS 322 (429)
Q Consensus 252 ~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~------~s~--~~~e~A~~~L~~L~~~~~~~~~~i~~~ 322 (429)
. ++.+..+.++..+..+|..|+.+...-.+. .++.-+... ++. .--..+..++..+-..-+...-.-...
T Consensus 160 ~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~-~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~ 238 (371)
T PF14664_consen 160 SFSISESLLDTLLYLLDSPRTRKYLRPGFDLE-SLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND 238 (371)
T ss_pred cHhHHHHHHHHHHHHhCCcchhhhhcCCccHH-HHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence 4 788888889999999999999887644443 555544311 111 122334444444433222222111121
Q ss_pred -CchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 323 -GIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 323 -G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.++..|+..+...++++++.-..++..+=+
T Consensus 239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 468889999998888888887776544443
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00081 Score=63.66 Aligned_cols=271 Identities=15% Similarity=0.163 Sum_probs=169.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
.+..+|..|++.++.++..|+.-+-.++.. ..+..... .-.++.|.+++...++ -+.|+.+|.|++.+. .-+..
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~ 78 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKK 78 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHH
Confidence 356789999999999999999888888765 22322222 3457888999987766 677899999999986 46666
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc-------cCCcHHHHHHhhhcCCcH-HHHHHHHHHHH
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS-------SSEILPFLVGILESGSSV-ETKELCIGALY 223 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-------~~g~i~~Lv~lL~~~~~~-~~~~~A~~aL~ 223 (429)
+.+. .+..++..+-.+....-..++.+|.||+..++....+- +.|.+...+.....+-.. .--...+-.+.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 6665 66666777666655555667788999998775433321 244444444444433210 12345567788
Q ss_pred HhccCCCChhHHHhcCcHHH--HHHhccCCc-chHH-HHHHHHHHhhCChhcHHHHhcC---------------------
Q 014196 224 NLSAVLDNARPMVSNGVVHT--LLKLCSMKE-RLSE-KSLATLGNLVVTSTGKKAMEDS--------------------- 278 (429)
Q Consensus 224 nLs~~~~n~~~iv~~G~v~~--Lv~lL~~~~-~~~~-~a~~~L~~La~~~e~~~~i~~~--------------------- 278 (429)
||+.....+..+.+-..+|. ++.+-. .+ .+++ ..+++|.|.|-.......+...
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEE 236 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEE 236 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence 88888777766665543332 222212 22 2222 2355666655433333322221
Q ss_pred --CCChHHHHHhcc----cCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHHHHHH
Q 014196 279 --PLVPESLIEILT----WEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG-SPLAQRRASKLLQWFK 351 (429)
Q Consensus 279 --~~i~~~Lv~~L~----~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~-~~~~k~~A~~lL~~l~ 351 (429)
...|.-| ++|. +..++..+..-+.+|+-||.. ...|+.+...|+.|.|-++-... ++++.+.+-.+.+.+-
T Consensus 237 dm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv 314 (353)
T KOG2973|consen 237 DMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLV 314 (353)
T ss_pred HHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 2233223 5554 135677888889999999974 56788888889766666655543 5667776667888877
Q ss_pred h
Q 014196 352 D 352 (429)
Q Consensus 352 ~ 352 (429)
+
T Consensus 315 ~ 315 (353)
T KOG2973|consen 315 R 315 (353)
T ss_pred h
Confidence 5
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00021 Score=70.13 Aligned_cols=275 Identities=15% Similarity=0.049 Sum_probs=183.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcC-cHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELG-VIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G-~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
....+..|..++......+...+..++..... +-...+.. ....|-..+++ .+++...-|+.+|..+...+ +.|-.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~ 193 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYA 193 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhhe
Confidence 45677778877777776677777777754321 11111110 01223344444 56677777888999999997 59999
Q ss_pred HHhcCccchhhhhccC--CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 152 MVEAGILTKLPKNVDA--VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
++.+.++..++..+.+ .+...+.+..-.+|-|+.++.....+...+.|+.|+.++++...+++.+-++.++.|+....
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999998842 33667777888999999887666666678899999999998876678889999999998765
Q ss_pred C-------ChhHHHhcCcHHHHHHhccCC---c-chHHHH---HHHH----HHhhCChhcHHHHhc--------------
Q 014196 230 D-------NARPMVSNGVVHTLLKLCSMK---E-RLSEKS---LATL----GNLVVTSTGKKAMED-------------- 277 (429)
Q Consensus 230 ~-------n~~~iv~~G~v~~Lv~lL~~~---~-~~~~~a---~~~L----~~La~~~e~~~~i~~-------------- 277 (429)
+ ....|+..+ ++.-++.|... | ++++.. ...| ..|+..++...++..
T Consensus 274 ~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 274 PDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred chhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 3 234556555 45555555421 2 222211 1111 223333332222221
Q ss_pred -----------CCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHH
Q 014196 278 -----------SPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKL 346 (429)
Q Consensus 278 -----------~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~l 346 (429)
.-.+...|+++|..+.+|..-.-|+.=+...-.+.|+.+..+.+-|+=..+..++...+++++-.|...
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 112345788888744445555556666666666678899999999999999999999999999999987
Q ss_pred HHHHH
Q 014196 347 LQWFK 351 (429)
Q Consensus 347 L~~l~ 351 (429)
++.|-
T Consensus 433 vQ~lm 437 (442)
T KOG2759|consen 433 VQKLM 437 (442)
T ss_pred HHHHH
Confidence 76553
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00018 Score=74.15 Aligned_cols=152 Identities=11% Similarity=0.041 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc-CCCccccccCCcHHHHH
Q 014196 125 TEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLSSSEILPFLV 203 (429)
Q Consensus 125 s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv 203 (429)
..|.....+|+..+.+.+..-..-+...-...+..+|++++..++..++..+.++|.||... .+.+..+...|+|..|.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 34667777777777777654322344444567888999999888877777788899999754 46788888999999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHHhccCCCChhHHH-hcC-cHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhc
Q 014196 204 GILESGSSVETKELCIGALYNLSAVLDNARPMV-SNG-VVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMED 277 (429)
Q Consensus 204 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv-~~G-~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~ 277 (429)
.++.+.+. ..+..++++|+++..+.++..... .+. .-..++.+..|++ +++|.|..+|+|+... .+.-..+.+
T Consensus 468 s~~~~~~~-n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 468 SMLTDPDF-NSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHhcCCCc-hHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 99999887 689999999999998776653322 222 2345677788888 9999999999999874 444444444
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00035 Score=73.23 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=117.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch---HHHHHhcCccchhhhhccCCC-------HHHHHHHHHHHHHhhc
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN---KAIMVEAGILTKLPKNVDAVD-------ESTRHEFGELLLSLSS 185 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n---k~~iv~~G~i~~Lv~lL~~~~-------~~~~~~aa~~L~~Ls~ 185 (429)
+..-+.+|+..+.+-+-.++..+.++..+++.+ ++.|.++=+.+.|-++|.++. ...+.-+..+|..++.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~ 86 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCR 86 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcC
Confidence 445578898888666777788888887776533 446788877888999998733 3445556778888887
Q ss_pred cCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHh
Q 014196 186 LANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNL 265 (429)
Q Consensus 186 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~L 265 (429)
.++....-.-.+-||.|++++.+++...+...|+.+|..++.+++.+..+++.|+|+.|.+.+.+.....+.++.+|.++
T Consensus 87 ~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~L 166 (543)
T PF05536_consen 87 DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNL 166 (543)
T ss_pred ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 55432211113569999999988765467889999999999999999999999999999999988667889999999988
Q ss_pred hCC
Q 014196 266 VVT 268 (429)
Q Consensus 266 a~~ 268 (429)
+..
T Consensus 167 ls~ 169 (543)
T PF05536_consen 167 LSR 169 (543)
T ss_pred HHh
Confidence 763
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0052 Score=66.59 Aligned_cols=257 Identities=14% Similarity=0.055 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
....+..++.+.+.+.+.|+-....+.+.++.+++..-. +|..|..=+.++|+.+|-.|+.+|.++-... .-.
T Consensus 67 S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~--i~e 139 (746)
T PTZ00429 67 SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS--VLE 139 (746)
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH--HHH
Confidence 345677888888889888888888888888877664322 2667788888999999999999998775432 222
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD 230 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 230 (429)
.+ ++++.+++...++-+|..|+.++..+-..+. ..+.+.|.++.|.++|.+.++ .+..+|+.+|..+.....
T Consensus 140 ~l-----~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp-~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 140 YT-----LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNP-VVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HH-----HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCc-cHHHHHHHHHHHHHHhCc
Confidence 22 3446777888889999999998888864332 334467889999999998887 789999999999986543
Q ss_pred ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 231 NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 231 n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
+.. -...+.+..|+..|.+.+ -.+-..+.+|.. ..|....... .+...+...|. +.++.+.-.|+.+++.+.
T Consensus 212 ~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~--y~P~~~~e~~---~il~~l~~~Lq-~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 212 EKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAA--QRPSDKESAE---TLLTRVLPRMS-HQNPAVVMGAIKVVANLA 284 (746)
T ss_pred hhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHh--cCCCCcHHHH---HHHHHHHHHhc-CCCHHHHHHHHHHHHHhc
Confidence 321 223455677777776553 233333444422 1233222221 23346667777 778888888888888877
Q ss_pred hC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 310 HQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 310 ~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
.. +++..+.+.. .+.++|+.|+ ++++.+|--+..-+..+.
T Consensus 285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 285 SRCSQELIERCTV-RVNTALLTLS-RRDAETQYIVCKNIHALL 325 (746)
T ss_pred CcCCHHHHHHHHH-HHHHHHHHhh-CCCccHHHHHHHHHHHHH
Confidence 54 2333222221 2336677764 456777777775444443
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0036 Score=67.82 Aligned_cols=245 Identities=11% Similarity=0.058 Sum_probs=147.2
Q ss_pred cchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHH
Q 014196 39 KSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQM 118 (429)
Q Consensus 39 PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~ 118 (429)
+|..+|+++.-+..... . ...+...-.+..+.+.+.++|+..|.-|++.+..+-. ++.-.. .+++
T Consensus 80 ~d~elKKLvYLYL~~ya-----~---~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~ 144 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTA-----R---LQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEP 144 (746)
T ss_pred CCHHHHHHHHHHHHHHc-----c---cChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHH
Confidence 45566666655554330 0 0011123457788888888888888777776666542 222222 2667
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCc
Q 014196 119 LVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEI 198 (429)
Q Consensus 119 Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~ 198 (429)
+..+|.+.++-||..|+.++.++-..+. ..+.+.|.++.|..+|...+..+..+|..+|..+...+..... ...+.
T Consensus 145 lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~ 220 (746)
T PTZ00429 145 LRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEW 220 (746)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHH
Confidence 8888999999999999999999976542 4455678888999999988888999999999999754322111 12344
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC--hhcHHHH
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT--STGKKAM 275 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~--~e~~~~i 275 (429)
+..|...|...+. =.+...+.+|.... +.+.... ...+..+...|.... .++-.|+.++.++... ++....+
T Consensus 221 ~~~Ll~~L~e~~E-W~Qi~IL~lL~~y~--P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~ 295 (746)
T PTZ00429 221 VNRLVYHLPECNE-WGQLYILELLAAQR--PSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC 295 (746)
T ss_pred HHHHHHHhhcCCh-HHHHHHHHHHHhcC--CCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence 5556666655454 24555666664422 2222211 244555666666543 7777777777777653 3332222
Q ss_pred hcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC
Q 014196 276 EDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ 311 (429)
Q Consensus 276 ~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~ 311 (429)
... +...|+.+++ +++..|-.++..+..+...
T Consensus 296 ~~r--l~~pLv~L~s--s~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 296 TVR--VNTALLTLSR--RDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HHH--HHHHHHHhhC--CCccHHHHHHHHHHHHHHH
Confidence 211 1124666643 5566666666555555543
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.1e-05 Score=51.12 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=36.9
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 014196 104 VKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 104 ~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 143 (429)
++++..+++.|++++|+.+|.++++++++.|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3588999999999999999999999999999999999973
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.7e-05 Score=51.09 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=38.0
Q ss_pred CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 312 SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 312 ~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
++++++.+++.|++|.|+.++.++++.+++.|+|.|++|.+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46889999999999999999999999999999999999863
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00023 Score=74.59 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=146.1
Q ss_pred CccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC-CcHHHHHHHHHHHHHhccCCC---
Q 014196 156 GILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESG-SSVETKELCIGALYNLSAVLD--- 230 (429)
Q Consensus 156 G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~~--- 230 (429)
..|+.|+.-+.+.. .+.|+.|+..|..+|. ++|..++..| +++|++.|..+ ..+++...++.+++++-.+++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 34666776665544 7789999999999884 5666666555 78999999864 334788899999999988763
Q ss_pred ---Chh-----------H-HHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC--ChhcHHHHhcCCCChHHHHHhcccC
Q 014196 231 ---NAR-----------P-MVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV--TSTGKKAMEDSPLVPESLIEILTWE 292 (429)
Q Consensus 231 ---n~~-----------~-iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~--~~e~~~~i~~~~~i~~~Lv~~L~~~ 292 (429)
+-. . +-..|-|..|+..+...+ .++..++..|.++-. .++.+.++...+..+..|+++|. +
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~-D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR-D 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh-h
Confidence 211 1 223477888888887767 899999999987765 57899999888877789999998 6
Q ss_pred CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-C-CH--HHHHHHHHHHHHHH
Q 014196 293 EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL-G-SP--LAQRRASKLLQWFK 351 (429)
Q Consensus 293 ~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-~-~~--~~k~~A~~lL~~l~ 351 (429)
..+..|-.++..|..+...++..++.+.=++++..|+.++.. | .+ -+..-+..+|.+|-
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL 240 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL 240 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 677788889999999998888888888889999999999986 4 22 34566666554443
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.9e-05 Score=75.93 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=116.7
Q ss_pred CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhh
Q 014196 85 SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKN 164 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~l 164 (429)
+......|+..++.+++.-...|.-+....++.+||.+|..++..++..++.+|.|+...-...|..+...|+|+.+...
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~ 469 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM 469 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence 45566667777777776444566666678899999999999999999999999999998865569999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 165 VDAVDESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 165 L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
+...+...+..+.++|+++..+++...... ..=....++.+..+++. .+++.++..|.||....
T Consensus 470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~-~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDW-AVQEQCFQLLRNLTCNS 535 (678)
T ss_pred hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCH-HHHHHHHHHHHHhhcCc
Confidence 999999999999999999998887655443 22233466777777776 89999999999997653
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0019 Score=63.88 Aligned_cols=240 Identities=15% Similarity=0.108 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch---------HHHHHHHhcCcHHHHHHhhcCCCHHHH------HHH
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV---------KIKKLMAELGVIQMLVSMVSTEVIGRR------RAA 134 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~---------~~r~~i~~~G~i~~Lv~lL~s~~~~~~------~~A 134 (429)
+...++.++..|.+.|.+.-...+.-++.|+..+. ..-..+++.++++.||+.++.-|..+. ..+
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 34567889999999999998889999999986442 345677888999999999987655444 445
Q ss_pred HHHHHHhccCCCchHHHHHhcCccchhhh-hccC-CCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhc---
Q 014196 135 IKALIQLANGTYTNKAIMVEAGILTKLPK-NVDA-VDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILES--- 208 (429)
Q Consensus 135 ~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~-lL~~-~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~--- 208 (429)
+..+-|+..-.+.....+++.|.+.-|.. +... .-...+..|..+|.-+-.+. .++...+.-.+|..|++-+.-
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 67777777665456778888887755544 2222 22456777777777666554 477778888888888776631
Q ss_pred -----CCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhc---HHHHhcCCC
Q 014196 209 -----GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTG---KKAMEDSPL 280 (429)
Q Consensus 209 -----~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~---~~~i~~~~~ 280 (429)
.+..+..++...+|+.+-..++|+..++...++....-+++......-.++.+|-....++++ ...+++..|
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 223456778889999999999999999999999877777765435566778888866665554 455666666
Q ss_pred ChHHHHHhcccCCC---------hhHHHHHHHHHHHHhh
Q 014196 281 VPESLIEILTWEEK---------PKCQELSAYILMILAH 310 (429)
Q Consensus 281 i~~~Lv~~L~~~~s---------~~~~e~A~~~L~~L~~ 310 (429)
.- ++.....+.++ ....|+.+.+|+.+-.
T Consensus 363 Lr-tiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 363 LR-TIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HH-HHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 54 44443221222 2345788888887654
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0023 Score=64.72 Aligned_cols=223 Identities=13% Similarity=-0.035 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLH-FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~-~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
...++.++..|. .++.++...++..+. ..+++. ++..|+..|.+.++.++..++.+|..+-.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALL--AQEDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWLGG------ 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHh--ccCChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcCCc------
Confidence 345777888885 345555554444332 111211 26777777777777777777777753321
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
.++.+.|+.++.+.++..+..+..++... .....+.|..+|++.++ .++..|+.+|..+..
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~-~Vra~A~raLG~l~~-- 176 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDA-LVRAAALRALGELPR-- 176 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCH-HHHHHHHHHHHhhcc--
Confidence 12334455666666665555444333331 11234667777766665 567777777765542
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhc---CCC------------------ChHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMED---SPL------------------VPESLIE 287 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~---~~~------------------i~~~Lv~ 287 (429)
...++.|...+.+.+ .++..|+..|..+- .++....+.. ..| +.+.|..
T Consensus 177 --------~~a~~~L~~al~d~~~~VR~aA~~al~~lG-~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ 247 (410)
T TIGR02270 177 --------RLSESTLRLYLRDSDPEVRFAALEAGLLAG-SRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE 247 (410)
T ss_pred --------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHH
Confidence 234555555565554 55556665554442 2221111110 011 1123333
Q ss_pred hcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 288 ILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 288 ~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
++. .+..++.++.+|..+- ...+++.|+..+.+. ..++.|.+.++.+..-+
T Consensus 248 ll~---d~~vr~~a~~AlG~lg-----------~p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 248 LLQ---AAATRREALRAVGLVG-----------DVEAAPWCLEAMREP--PWARLAGEAFSLITGMD 298 (410)
T ss_pred Hhc---ChhhHHHHHHHHHHcC-----------CcchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence 332 1224444444443321 123677777777543 48888889888888643
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00041 Score=72.74 Aligned_cols=181 Identities=20% Similarity=0.193 Sum_probs=120.9
Q ss_pred hhhhhccCCCHHHHHHHH-HHHHHhhccCC----CccccccCCcHHHHHHhhhcCC------cHHHHHHHHHHHHHhccC
Q 014196 160 KLPKNVDAVDESTRHEFG-ELLLSLSSLAN----THIPLSSSEILPFLVGILESGS------SVETKELCIGALYNLSAV 228 (429)
Q Consensus 160 ~Lv~lL~~~~~~~~~~aa-~~L~~Ls~~~~----~~~~i~~~g~i~~Lv~lL~~~~------~~~~~~~A~~aL~nLs~~ 228 (429)
.-+.+|+..+ +..+-++ ..+-.+...++ .+..|.++=+..+|-++|+++. ....+.-|+..|..+|..
T Consensus 9 ~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~ 87 (543)
T PF05536_consen 9 KCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD 87 (543)
T ss_pred HHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 3455666555 3333333 34445544332 1223445556799999998832 235677788899999986
Q ss_pred CCCh--hHHHhcCcHHHHHHhccCC-c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 229 LDNA--RPMVSNGVVHTLLKLCSMK-E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 229 ~~n~--~~iv~~G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
++.. ..++ +.||.|++++... + .++..|+.+|..++.+++|++++.+.|+++ .|++.+. ..+...+.|..+
T Consensus 88 ~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~-~L~ei~~--~~~~~~E~Al~l 162 (543)
T PF05536_consen 88 PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVP-ALCEIIP--NQSFQMEIALNL 162 (543)
T ss_pred hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHH-HHHHHHH--hCcchHHHHHHH
Confidence 6544 4444 6899999999765 4 889999999999999999999999998886 9999997 377789999999
Q ss_pred HHHHhhCCH-HH----HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 305 LMILAHQSS-EQ----RDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 305 L~~L~~~~~-~~----~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
|.++++... +. ...+. .+++.|...........|-.+..+|.
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~--~il~~La~~fs~~~~~~kfell~~L~ 209 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLH--SILPSLARDFSSFHGEDKFELLEFLS 209 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHH--HHHHHHHHHHHhhccchHHHHHHHHH
Confidence 999887422 11 11111 24555555555433344444444443
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=70.71 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=126.2
Q ss_pred HHHHHhcCccchhhhhccCCCHHH--HHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 149 KAIMVEAGILTKLPKNVDAVDEST--RHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~--~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
...|...|+++.|+++++.++.+. +.+++.+|..+... +|+..++.-| +..++.+-+...+.+..+..+..|-|+-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 456777899999999999888655 78888888877543 5666666443 3333333344444477888999999999
Q ss_pred cCCC-ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC--ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHH
Q 014196 227 AVLD-NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV--TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSA 302 (429)
Q Consensus 227 ~~~~-n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~--~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~ 302 (429)
+|++ .+..++++|++..++.-.+..+ .+.++|+-+|.|++- +.+++..|++... ++.|.-+-. ..++..+-+|+
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~-~EWLF~LA~-skDel~R~~AC 328 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRA-AEWLFPLAF-SKDELLRLHAC 328 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhh-hhhhhhhhc-chHHHHHHHHH
Confidence 8765 5689999999999988777554 889999999999886 5678888887444 346766655 45667788999
Q ss_pred HHHHHHhhCCHHHHHHHHhCCc
Q 014196 303 YILMILAHQSSEQRDKMAKSGI 324 (429)
Q Consensus 303 ~~L~~L~~~~~~~~~~i~~~G~ 324 (429)
.+...|+.. .++-..+.+.|.
T Consensus 329 lAV~vlat~-KE~E~~VrkS~T 349 (832)
T KOG3678|consen 329 LAVAVLATN-KEVEREVRKSGT 349 (832)
T ss_pred HHHhhhhhh-hhhhHHHhhccc
Confidence 888887754 566666777774
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0065 Score=66.59 Aligned_cols=272 Identities=15% Similarity=0.176 Sum_probs=158.8
Q ss_pred HHHHHHHHh----cCCCHHHHHHHHHHHHHHhhhchH-HHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCC
Q 014196 73 LLQKSVKRL----HFGSWEEKEMAAKEIEKLAKEDVK-IKKLMAELGVIQMLVSMVST--EVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 73 ~l~~lv~~L----~~~~~~~~~~Aa~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~ 145 (429)
.+|.++.-+ ..++.+.-..+...+-.++...+. .+..+.+ +|..-...-.+ -+..+|..|+..|..++..-
T Consensus 203 llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 203 LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence 344444443 334444445566666666654443 2222222 12222333333 35788999999988887652
Q ss_pred CchHHHH--HhcCccchhhhhccCCCH----------------HHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhh
Q 014196 146 YTNKAIM--VEAGILTKLPKNVDAVDE----------------STRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILE 207 (429)
Q Consensus 146 ~~nk~~i--v~~G~i~~Lv~lL~~~~~----------------~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~ 207 (429)
..-.+.. .-.-.++.+..++..... .....|..+|-.++..=..+.. -.-.++.+-.+|.
T Consensus 281 p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v--~p~~~~~l~~~l~ 358 (1075)
T KOG2171|consen 281 PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV--LPPLFEALEAMLQ 358 (1075)
T ss_pred HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe--hHHHHHHHHHHhc
Confidence 1111111 111233344444332210 0122344566666644322221 1223556666777
Q ss_pred cCCcHHHHHHHHHHHHHhccCCCChhHHHh---cCcHHHHHHhccCCc-chHHHHHHHHHHhhCC--hhcHHHHhcCCCC
Q 014196 208 SGSSVETKELCIGALYNLSAVLDNARPMVS---NGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT--STGKKAMEDSPLV 281 (429)
Q Consensus 208 ~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~---~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~--~e~~~~i~~~~~i 281 (429)
+.+. .-|.+++.+|..++.. +...++ ..+++.++..|.|++ .++-.|+.+++.++.+ |+..+..-+ .+
T Consensus 359 S~~w-~~R~AaL~Als~i~EG---c~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e--~l 432 (1075)
T KOG2171|consen 359 STEW-KERHAALLALSVIAEG---CSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE--RL 432 (1075)
T ss_pred CCCH-HHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH--hc
Confidence 7776 6788888888887753 322222 256777778888987 7777888899999873 555555443 46
Q ss_pred hHHHHHhcccCCChhHHHHHHHHHHHHhhCCH-HHHHHHHhCCchH-HHHHHhhcCCHHHHHHHHHHHHHHHhccc
Q 014196 282 PESLIEILTWEEKPKCQELSAYILMILAHQSS-EQRDKMAKSGIVH-VSLQLALLGSPLAQRRASKLLQWFKDERQ 355 (429)
Q Consensus 282 ~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~-~~~~~i~~~G~v~-~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 355 (429)
++.|+..+....+++++.||+.+|.+...... +.-..-. .+.+. .|..+++++++.+|+.|+..+.-..+.-+
T Consensus 433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 67899999856888999999999998875432 2111111 24455 55556677899999999999988887543
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.001 Score=72.70 Aligned_cols=174 Identities=12% Similarity=0.099 Sum_probs=114.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE--LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
++.+-..|++.++..|..|+.+|..++....+ .|.. ..+++..+..|++++|.||-+|+.+++.++.+-...-+.
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~---~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSD---VMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHH---HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 45566778899999999999999998865433 3322 346777788899999999999999999999875322222
Q ss_pred HHhcCccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 152 MVEAGILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
-...-.+|.|+..+.+.. ..++.+||.++.|++..... ..|. =.+.+..++.+|...++..+++.++.+|...+..
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 223445667888887665 57788889999999854332 2222 1233443344444444448999999999988864
Q ss_pred CCChhHHHhcCcHHHHHHhccCC
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~ 251 (429)
-+..-.=--.-.+|.|...|...
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~ 528 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNA 528 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCC
Confidence 33321111123456666666543
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0035 Score=59.48 Aligned_cols=224 Identities=17% Similarity=0.203 Sum_probs=144.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
...++.+.+.+....+ -..|+.+|-+++. ++..|..+.+. .+..++.++..+....-+..+..|.||+..++....
T Consensus 43 ~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ 118 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAA 118 (353)
T ss_pred hhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHH
Confidence 4456677777766544 4468899999986 45778777777 888899999887666777788999999998743333
Q ss_pred HHHh------cCccchhhhhccCCCH--HHHHHHHHHHHHhhccCCCccccccCCcHH--HHHHhhhcCCcHHHH-HHHH
Q 014196 151 IMVE------AGILTKLPKNVDAVDE--STRHEFGELLLSLSSLANTHIPLSSSEILP--FLVGILESGSSVETK-ELCI 219 (429)
Q Consensus 151 ~iv~------~G~i~~Lv~lL~~~~~--~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~~~~-~~A~ 219 (429)
.+.. .|.+.........+.. ..-.+.|.++.||+.....+..+.....+| .|+.+-. .++ .++ ...+
T Consensus 119 ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s-~vRr~Gva 196 (353)
T KOG2973|consen 119 LLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDS-QVRRGGVA 196 (353)
T ss_pred HHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cch-hhhccchH
Confidence 3321 3333333333333222 223456778999998887777766544222 2333323 333 344 4567
Q ss_pred HHHHHhccCCCChhHHHhc--CcHHHHHH---------------------hcc-----CCc-chHHHHHHHHHHhhCChh
Q 014196 220 GALYNLSAVLDNARPMVSN--GVVHTLLK---------------------LCS-----MKE-RLSEKSLATLGNLVVTST 270 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv~~--G~v~~Lv~---------------------lL~-----~~~-~~~~~a~~~L~~La~~~e 270 (429)
++|.|.|....+...+... ..+|.++- +|. +++ .++..-+.+|..||.+..
T Consensus 197 gtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~ 276 (353)
T KOG2973|consen 197 GTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA 276 (353)
T ss_pred HHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH
Confidence 8999999988888766653 33444432 121 123 677788899999999999
Q ss_pred cHHHHhcCCCChHHHHHhcccCCChhHHHHH
Q 014196 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A 301 (429)
||+.+...|+-+ .+=++=.|..++++.+.+
T Consensus 277 GRe~lR~kgvYp-ilRElhk~e~ded~~~ac 306 (353)
T KOG2973|consen 277 GREVLRSKGVYP-ILRELHKWEEDEDIREAC 306 (353)
T ss_pred hHHHHHhcCchH-HHHHHhcCCCcHHHHHHH
Confidence 999999977653 444443445556655543
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.014 Score=58.30 Aligned_cols=269 Identities=15% Similarity=0.109 Sum_probs=171.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 76 KSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE--VIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 76 ~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
.+...+-+++.+++..+.+.+|.+.. ++..-+.+.+.+.--.++..|..+ +..-+++|+..++.+..-. .+.. -.
T Consensus 29 ~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~-~~ 105 (371)
T PF14664_consen 29 RIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK-EI 105 (371)
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc-cC
Confidence 33334445557777777777777765 556778888888666677777654 3455788988887775542 1211 12
Q ss_pred hcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChh
Q 014196 154 EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNAR 233 (429)
Q Consensus 154 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~ 233 (429)
-.|.+..++.+.+..+...+..|..+|.+++..+ -..+..+|++..|++.+.++.. +..+..+.++..+-.++..+.
T Consensus 106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~-~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF-SISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH-hHHHHHHHHHHHHhCCcchhh
Confidence 4566777899998888888888889999999643 2344589999999999988776 577888899999999998887
Q ss_pred HHHhcCcHHHHHHhccCC--------c--chHHHHHHHHHHhhCChhcHHHHhcCC-CChHHHHHhcccCCChhHHHHHH
Q 014196 234 PMVSNGVVHTLLKLCSMK--------E--RLSEKSLATLGNLVVTSTGKKAMEDSP-LVPESLIEILTWEEKPKCQELSA 302 (429)
Q Consensus 234 ~iv~~G~v~~Lv~lL~~~--------~--~~~~~a~~~L~~La~~~e~~~~i~~~~-~i~~~Lv~~L~~~~s~~~~e~A~ 302 (429)
.+...--+..++.-+.|. . +....+..++..+-++..|--.+...+ .....||+.|. .+++..++.-.
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~-~p~~~ir~~Il 261 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLR-LPNPEIRKAIL 261 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHc-CCCHHHHHHHH
Confidence 665543344444443322 1 123344445555545554444443332 22346777776 56666666665
Q ss_pred HHHHHHhh---------------------C-------------------------C------HHHHHHHHhCCchHHHHH
Q 014196 303 YILMILAH---------------------Q-------------------------S------SEQRDKMAKSGIVHVSLQ 330 (429)
Q Consensus 303 ~~L~~L~~---------------------~-------------------------~------~~~~~~i~~~G~v~~L~~ 330 (429)
.++..+-. . + .-....++++|.++.|++
T Consensus 262 dll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~ 341 (371)
T PF14664_consen 262 DLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVE 341 (371)
T ss_pred HHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHH
Confidence 55544321 0 0 001234566788888888
Q ss_pred HhhcC-CHHHHHHHHHHHHHHH
Q 014196 331 LALLG-SPLAQRRASKLLQWFK 351 (429)
Q Consensus 331 ll~~~-~~~~k~~A~~lL~~l~ 351 (429)
+..+. ++....+|.-+|..+-
T Consensus 342 li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 342 LIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHhcCCCchHHHHHHHHHHHHH
Confidence 88775 6667777777665443
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00018 Score=55.98 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=68.5
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc
Q 014196 116 IQMLVSMV-STEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS 194 (429)
Q Consensus 116 i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 194 (429)
||.|+..| .++++.++..|+.+|.++. .. .+++.|..++++.+..+|..++.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----~~------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----DP------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----HH------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CH------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 68899999 8889999999999998442 11 34788899998888999999988888763
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
+..+++.|.+++.+++...++..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 44579999999988766456888888773
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.01 Score=62.05 Aligned_cols=257 Identities=14% Similarity=0.094 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchH-HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVK-IKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
++.-+.++..|.+.-+..+++|+..+..+.-.-|+ .|.+ +|.|+.-|+++|+.++.+|+..++.||..++.|-
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~------FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPC------FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhh------HHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 34456778888888899999999998887754443 3333 8999999999999999999999999998776431
Q ss_pred HH--------HHh-------------------------cCccchhhhhccCCC-HHHHHHHHHHHH--HhhccC-CCccc
Q 014196 150 AI--------MVE-------------------------AGILTKLPKNVDAVD-ESTRHEFGELLL--SLSSLA-NTHIP 192 (429)
Q Consensus 150 ~~--------iv~-------------------------~G~i~~Lv~lL~~~~-~~~~~~aa~~L~--~Ls~~~-~~~~~ 192 (429)
-. ++. ...+++|..++++.. .+...++..++- +++... ++...
T Consensus 217 L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~as 296 (877)
T KOG1059|consen 217 LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSAS 296 (877)
T ss_pred ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHH
Confidence 11 110 112333333333221 222223332221 111110 11111
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChh
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTST 270 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e 270 (429)
+ .-++.-|-.++.+.++ .+|.-++.|++.+.. |+..... --..++.+|.|.+ .++-+|+..|+.++. .+
T Consensus 297 i--qLCvqKLr~fiedsDq-NLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs-kk 367 (877)
T KOG1059|consen 297 I--QLCVQKLRIFIEDSDQ-NLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS-KK 367 (877)
T ss_pred H--HHHHHHHhhhhhcCCc-cHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh-hh
Confidence 1 1134555566667776 689889999988886 3332221 1245788999887 899999999998875 33
Q ss_pred cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHh-CCchHHHHHHhhc-CCHHHHHHHHHHHH
Q 014196 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAK-SGIVHVSLQLALL-GSPLAQRRASKLLQ 348 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~-~G~v~~L~~ll~~-~~~~~k~~A~~lL~ 348 (429)
+-.+|++ .|+..+.......-+..-+.-+..+|+.+ +-+-+.+ +=-+..|+++..- |+.+...-|..++.
T Consensus 368 Nl~eIVk------~LM~~~~~ae~t~yrdell~~II~iCS~s--nY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~D 439 (877)
T KOG1059|consen 368 NLMEIVK------TLMKHVEKAEGTNYRDELLTRIISICSQS--NYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIID 439 (877)
T ss_pred hHHHHHH------HHHHHHHhccchhHHHHHHHHHHHHhhhh--hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 4444544 45544432222233434444445567643 2222333 2245666666654 45555555554443
Q ss_pred HH
Q 014196 349 WF 350 (429)
Q Consensus 349 ~l 350 (429)
..
T Consensus 440 v~ 441 (877)
T KOG1059|consen 440 VA 441 (877)
T ss_pred Hh
Confidence 33
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0071 Score=65.53 Aligned_cols=135 Identities=15% Similarity=0.176 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhhchHHHHHHHh----cCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhh
Q 014196 90 EMAAKEIEKLAKEDVKIKKLMAE----LGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKN 164 (429)
Q Consensus 90 ~~Aa~~L~~La~~~~~~r~~i~~----~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~l 164 (429)
.-++.+|+++.+.+|+....+.. .|-.+.+...|.. .++.++.-|+..+..+.... +.-..+++.|.+..|+.+
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANK-ECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhccc-HHHHHHHhhhHHHHHHHH
Confidence 34788999999888865554443 4667778888875 57899999999987777665 578889999998888888
Q ss_pred ccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 165 VDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 165 L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
|.+. ++.|+.+..+|+.|++..+....-...|++..+..++-..+..+.+.+++..|..|.
T Consensus 1822 LHS~-PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1822 LHSQ-PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HhcC-hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 8654 567888888999998776554444466666666655544333344444444444443
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=60.95 Aligned_cols=179 Identities=18% Similarity=0.170 Sum_probs=108.2
Q ss_pred cCCCHHHHHHHHHHHHHHhhhc--hHHHHHHHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCc
Q 014196 82 HFGSWEEKEMAAKEIEKLAKED--VKIKKLMAE--LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGI 157 (429)
Q Consensus 82 ~~~~~~~~~~Aa~~L~~La~~~--~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~ 157 (429)
.+.+++.+.+|+..|+.+.+.+ ......+.+ ...+..++..+.+....+...|+.++..++.... +.-.-.-...
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~-~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG-SHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG-GGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-HhHHHHHHHH
Confidence 4568999999999999998876 333444433 1456777778877777888899999999887642 2221112356
Q ss_pred cchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCc-HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC-ChhHH
Q 014196 158 LTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEI-LPFLVGILESGSSVETKELCIGALYNLSAVLD-NARPM 235 (429)
Q Consensus 158 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~i 235 (429)
+|.|+..+.+.....++.|..+|..+........ .. ++.+...+.+.++ .++..++..|..+..... +...+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~-----~~~~~~l~~~~~~Kn~-~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSP-----KILLEILSQGLKSKNP-QVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-H-HHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH-----HHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHccchHhhh
Confidence 7888888887777777878888888885433111 12 5666666777776 789999988888765332 22222
Q ss_pred Hh----cCcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 236 VS----NGVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 236 v~----~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
-. ...++.+..++.|.+ ++++.|-.++..+..
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 22 346777788888886 888888888877755
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00076 Score=54.08 Aligned_cols=68 Identities=24% Similarity=0.270 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHhccCCCchHHHHHhc
Q 014196 88 EKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS--TEVIGRRRAAIKALIQLANGTYTNKAIMVEA 155 (429)
Q Consensus 88 ~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~ 155 (429)
.|...+..|.+++.+++.+...+++.|+||.++++-. ..+|-++|.|++++.||+.++++|+..|.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3566788899999999999999999999999999764 4579999999999999999998898888763
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0087 Score=59.34 Aligned_cols=237 Identities=16% Similarity=0.192 Sum_probs=164.1
Q ss_pred HHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC-----Cch----HHHHHhcCccchhh
Q 014196 92 AAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT-----YTN----KAIMVEAGILTKLP 162 (429)
Q Consensus 92 Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-----~~n----k~~iv~~G~i~~Lv 162 (429)
.+..+.-+|. -|..--.+++.++++.|+.+|...+.++-.+.+..|..|.-.+ ++. -..+++.+.++.|+
T Consensus 104 ~IQ~mhvlAt-~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 104 IIQEMHVLAT-MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHHhhhc-ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 3444444553 5667678999999999999999999999999898888886332 111 34556778999999
Q ss_pred hhccCCCHHHHHHH------HHHHHHhhccC-CCccccccCCcHHHHHHhhhc-CCcHHHHHHHHHHHHHhccC-CCChh
Q 014196 163 KNVDAVDESTRHEF------GELLLSLSSLA-NTHIPLSSSEILPFLVGILES-GSSVETKELCIGALYNLSAV-LDNAR 233 (429)
Q Consensus 163 ~lL~~~~~~~~~~a------a~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~-~~n~~ 233 (429)
..++..+...++++ ...+.|+.... .....+++.|.+.-|+.-+.. .....-+..|...|.-+-.+ .+|+.
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 99987776666554 34556665443 344445566776666653332 22224577788888776654 44888
Q ss_pred HHHhcCcHHHHHHhcc-----CC---c--chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 234 PMVSNGVVHTLLKLCS-----MK---E--RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 234 ~iv~~G~v~~Lv~lL~-----~~---~--~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
....-.++..++.-+. |+ + ++.++-...|+.+...+++|..+....|+ .|..++.+ .....+..+..
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGl--qLm~Lmlr-~Kk~sr~Salk 339 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGL--QLMNLMLR-EKKVSRGSALK 339 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccH--HHHHHHHH-HHHHhhhhHHH
Confidence 8888899999988764 32 1 56667777777777789999999997776 47776653 35556777888
Q ss_pred HHHHHhhCCH--HHHHHHHhCCchHHHHHHh
Q 014196 304 ILMILAHQSS--EQRDKMAKSGIVHVSLQLA 332 (429)
Q Consensus 304 ~L~~L~~~~~--~~~~~i~~~G~v~~L~~ll 332 (429)
+|-....+.+ .++...++.++...+..+.
T Consensus 340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred HHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 8887666543 6888888876666665543
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00047 Score=53.62 Aligned_cols=85 Identities=24% Similarity=0.245 Sum_probs=64.8
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 74 LQKSVKRL-HFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 74 l~~lv~~L-~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
|+.|++.| .++++.+|..|+..|..+.. + .+++.|+.+++++|+.++..|+++|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889999 77789999999988885432 1 34899999999999999999999998773
Q ss_pred HhcCccchhhhhccCCC-HHHHHHHHHHH
Q 014196 153 VEAGILTKLPKNVDAVD-ESTRHEFGELL 180 (429)
Q Consensus 153 v~~G~i~~Lv~lL~~~~-~~~~~~aa~~L 180 (429)
+..+++.|..++.+.+ ...+..|+.+|
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 2236777888887655 44466666665
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0043 Score=61.16 Aligned_cols=227 Identities=15% Similarity=0.146 Sum_probs=154.1
Q ss_pred HHhcC-CCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCCchHHHHHhc
Q 014196 79 KRLHF-GSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST--EVIGRRRAAIKALIQLANGTYTNKAIMVEA 155 (429)
Q Consensus 79 ~~L~~-~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~ 155 (429)
..+++ .+.++..-|+..|..+.+.+ +.|..++.+.++..|+..|.+ .+..+|-..+-+++-|+++. .-.+.+..-
T Consensus 163 ~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~-~~ae~~~~~ 240 (442)
T KOG2759|consen 163 EQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNP-HAAEKLKRF 240 (442)
T ss_pred HHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCH-HHHHHHhhc
Confidence 33444 35667777888999998865 789999999999999999954 35788888999999999986 456666667
Q ss_pred CccchhhhhccCCC-HHHHHHHHHHHHHhhccCC---Cccccc---cCCcHHHHHHhhhcC--CcHHHHHHH-------H
Q 014196 156 GILTKLPKNVDAVD-ESTRHEFGELLLSLSSLAN---THIPLS---SSEILPFLVGILESG--SSVETKELC-------I 219 (429)
Q Consensus 156 G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~---~~~~i~---~~g~i~~Lv~lL~~~--~~~~~~~~A-------~ 219 (429)
+.|+.|..++.... ..+.+.+.+++.|+....+ .+..+. -.+.++.-++.|... +.+++..+. -
T Consensus 241 ~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 241 DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK 320 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 88999999986443 4455667788888875542 222221 234455566666542 111222111 1
Q ss_pred HHHHHhccCC------------------------CChhHHHhc--CcHHHHHHhccCC-c-chHHHHHHHHHHhhC-Chh
Q 014196 220 GALYNLSAVL------------------------DNARPMVSN--GVVHTLLKLCSMK-E-RLSEKSLATLGNLVV-TST 270 (429)
Q Consensus 220 ~aL~nLs~~~------------------------~n~~~iv~~--G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La~-~~e 270 (429)
.-...||+.+ +|..++-+. ..+..|+.+|..+ + .+..-|+.=+..... .|+
T Consensus 321 ~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~ 400 (442)
T KOG2759|consen 321 NSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE 400 (442)
T ss_pred HHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch
Confidence 1112222221 455555554 6788899999754 2 444455555666666 799
Q ss_pred cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
|+..+.+.||=. .++++|+ +.+++++-+|+.++-.+-
T Consensus 401 gk~vv~k~ggKe-~vM~Lln-h~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 401 GKAVVEKYGGKE-RVMNLLN-HEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HhHHHHHhchHH-HHHHHhc-CCCchHHHHHHHHHHHHH
Confidence 999999988874 8999999 899999999988876654
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0093 Score=61.91 Aligned_cols=270 Identities=16% Similarity=0.095 Sum_probs=172.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHH--HHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCC
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKL--MAE--LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTY 146 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~--i~~--~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~ 146 (429)
+..+|.|...|.+++...+..|..+|..++.++++.-+. .-+ .-.+|.++.+.+++++.+|..|+.++-..-...
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~- 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ- 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-
Confidence 456899999999988888889999999999876542211 101 235889999999999999999999886655542
Q ss_pred chHHHHHh-cCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 147 TNKAIMVE-AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 147 ~nk~~iv~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
+...++. ...++.+..+-...++++|.+.+.+|..|-.... ..+. -.+.|..++...++.+. .+--.|+.-..
T Consensus 206 -~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~--dkl~phl~~IveyML~~tqd~dE-~VALEACEFwl 281 (885)
T KOG2023|consen 206 -TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP--DKLVPHLDNIVEYMLQRTQDVDE-NVALEACEFWL 281 (885)
T ss_pred -cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH--HhcccchHHHHHHHHHHccCcch-hHHHHHHHHHH
Confidence 3444443 2355556666667779999998887776653221 1222 24567777777777665 56667888888
Q ss_pred HhccCCCChhHHHh--cCcHHHHHHhcc----------CCc---------------------------------------
Q 014196 224 NLSAVLDNARPMVS--NGVVHTLLKLCS----------MKE--------------------------------------- 252 (429)
Q Consensus 224 nLs~~~~n~~~iv~--~G~v~~Lv~lL~----------~~~--------------------------------------- 252 (429)
.++..+--+..+.. ...||.|+.=+. +.+
T Consensus 282 a~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D 361 (885)
T KOG2023|consen 282 ALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD 361 (885)
T ss_pred HHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence 88887733333332 256677664332 000
Q ss_pred --------chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhC--
Q 014196 253 --------RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKS-- 322 (429)
Q Consensus 253 --------~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~-- 322 (429)
.+++-.+++|.-|+.. -+..+.. .+.|.|-+.|. +..=..+|.++-+|+.++.+ ..+-++..
T Consensus 362 DdD~~~dWNLRkCSAAaLDVLanv--f~~elL~--~l~PlLk~~L~-~~~W~vrEagvLAlGAIAEG---cM~g~~p~Lp 433 (885)
T KOG2023|consen 362 DDDAFSDWNLRKCSAAALDVLANV--FGDELLP--ILLPLLKEHLS-SEEWKVREAGVLALGAIAEG---CMQGFVPHLP 433 (885)
T ss_pred cccccccccHhhccHHHHHHHHHh--hHHHHHH--HHHHHHHHHcC-cchhhhhhhhHHHHHHHHHH---HhhhcccchH
Confidence 1122223333333220 0111211 12234445555 45556899999999999864 33333332
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 323 GIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 323 G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
..+|.|+.++.+..+.+|.-.+|.|..++..
T Consensus 434 eLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 434 ELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred HHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 3789999999999999999999999888863
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.023 Score=57.47 Aligned_cols=190 Identities=16% Similarity=0.111 Sum_probs=125.1
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 115 VIQMLVSMVS-TEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 115 ~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
+++.|+..|. .++.++...++.+|. ...+. . ++..|+..+...+..++..++.+|.. +
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~~-~--------~~~~L~~~L~d~~~~vr~aaa~ALg~----------i 113 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALL--AQEDA-L--------DLRSVLAVLQAGPEGLCAGIQAALGW----------L 113 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHh--ccCCh-H--------HHHHHHHHhcCCCHHHHHHHHHHHhc----------C
Confidence 4788899994 566777776665553 22221 1 25667888888777788888887763 4
Q ss_pred ccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcH
Q 014196 194 SSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGK 272 (429)
Q Consensus 194 ~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~ 272 (429)
...++.+.|+.+|.+.++ .++..++.++.. ......+.++.+|++.+ .+...|+.+|..+-..
T Consensus 114 ~~~~a~~~L~~~L~~~~p-~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---- 177 (410)
T TIGR02270 114 GGRQAEPWLEPLLAASEP-PGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR---- 177 (410)
T ss_pred CchHHHHHHHHHhcCCCh-HHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----
Confidence 456678999999988887 688777766655 11335678999998876 8888999999876431
Q ss_pred HHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHH------------------HHHhC----CchHHHHH
Q 014196 273 KAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRD------------------KMAKS----GIVHVSLQ 330 (429)
Q Consensus 273 ~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~------------------~i~~~----G~v~~L~~ 330 (429)
..+ +.|...+. +.++.++..|+..|..+.. ++... .+... .+++.|..
T Consensus 178 ------~a~-~~L~~al~-d~~~~VR~aA~~al~~lG~--~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ 247 (410)
T TIGR02270 178 ------LSE-STLRLYLR-DSDPEVRFAALEAGLLAGS--RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRE 247 (410)
T ss_pred ------cch-HHHHHHHc-CCCHHHHHHHHHHHHHcCC--HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHH
Confidence 233 36777777 7888899888888765521 21111 11111 24445555
Q ss_pred HhhcCCHHHHHHHHHHHHHHHhc
Q 014196 331 LALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 331 ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
++++. .++..+.+.|..+.+.
T Consensus 248 ll~d~--~vr~~a~~AlG~lg~p 268 (410)
T TIGR02270 248 LLQAA--ATRREALRAVGLVGDV 268 (410)
T ss_pred HhcCh--hhHHHHHHHHHHcCCc
Confidence 55543 3677777777766653
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.037 Score=56.85 Aligned_cols=229 Identities=18% Similarity=0.195 Sum_probs=150.6
Q ss_pred CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCCCchHHHHH-hcC
Q 014196 83 FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE-----VIGRRRAAIKALIQLANGTYTNKAIMV-EAG 156 (429)
Q Consensus 83 ~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~-----~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G 156 (429)
..+.....+|++.|.|+...++..|+.+++.|..+.++..|+.. +.++.-.....|.-+.......+..++ +.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 34678889999999999999999999999999999999999886 677887788888777665444565555 557
Q ss_pred ccchhhhhccC----C-------------CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC--------Cc
Q 014196 157 ILTKLPKNVDA----V-------------DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESG--------SS 211 (429)
Q Consensus 157 ~i~~Lv~lL~~----~-------------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--------~~ 211 (429)
++..+...|.. . +.....++..+++|+..+......-...+.++.|+.++..- ..
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 77777665531 0 11223345568888876543322212456677777776532 11
Q ss_pred HHHHHHHHHHHHHhccCC-CC-------h----hHHHhcCcHHHHHHhccCC---------cchHHHHHHHHHHhhCC-h
Q 014196 212 VETKELCIGALYNLSAVL-DN-------A----RPMVSNGVVHTLLKLCSMK---------ERLSEKSLATLGNLVVT-S 269 (429)
Q Consensus 212 ~~~~~~A~~aL~nLs~~~-~n-------~----~~iv~~G~v~~Lv~lL~~~---------~~~~~~a~~~L~~La~~-~ 269 (429)
.....+++.+|.|+-... .. . ..-.....+..|+.+|... ++...-.+.+|.+++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 246677888888873210 00 0 1112234566777776521 13444556666677663 4
Q ss_pred hcHHHHhc---------------CCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCC
Q 014196 270 TGKKAMED---------------SPLVPESLIEILTWEEKPKCQELSAYILMILAHQS 312 (429)
Q Consensus 270 e~~~~i~~---------------~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~ 312 (429)
..|+.+.. .+.+...|++++. +..+..+..+...|+.||..+
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt-~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT-SPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC-CCCchHHHHHHHHHHHHHhhh
Confidence 55555443 3566678999998 555889999999999999654
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.016 Score=59.53 Aligned_cols=259 Identities=17% Similarity=0.148 Sum_probs=160.8
Q ss_pred HHHHHHHhhhchHHHHHHHhcCcHHHHHHhh----------cCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhh
Q 014196 93 AKEIEKLAKEDVKIKKLMAELGVIQMLVSMV----------STEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLP 162 (429)
Q Consensus 93 a~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL----------~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv 162 (429)
+.+||.+++ ++.+...+....++..|...- ...+..+...|+.+|.|+-+.++..|+..++.|..+.++
T Consensus 2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 456676765 344555555555566665543 345788999999999999999877798999999999999
Q ss_pred hhccCC-----CHHHHHHHHHHHHHhhccC-CCccccc-cCCcHHHHHHhhhc---------C-------CcHHHHHHHH
Q 014196 163 KNVDAV-----DESTRHEFGELLLSLSSLA-NTHIPLS-SSEILPFLVGILES---------G-------SSVETKELCI 219 (429)
Q Consensus 163 ~lL~~~-----~~~~~~~aa~~L~~Ls~~~-~~~~~i~-~~g~i~~Lv~lL~~---------~-------~~~~~~~~A~ 219 (429)
..|... ..+..-....+|+-++... +.+..+. +.+++..++..|.. . ........++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999765 4555555667777666543 4444444 56778877776642 0 1223456789
Q ss_pred HHHHHhccCCCChhHHHhcCcHHHHHHhccC-------C---cchHHHHHHHHHHhhC-Chhc-------HHHHh---cC
Q 014196 220 GALYNLSAVLDNARPMVSNGVVHTLLKLCSM-------K---ERLSEKSLATLGNLVV-TSTG-------KKAME---DS 278 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-------~---~~~~~~a~~~L~~La~-~~e~-------~~~i~---~~ 278 (429)
.+++|+..+......--+.+.++.|+.++.+ . +...-.++.+|.|+-. +.+. ...+. ..
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998765444322345666666665431 1 2566677777777632 1111 00010 11
Q ss_pred CCChHHHHHhccc----CC---ChhHHHHHHHHHHHHhhCCHHHHHHHHh----------------CCchHHHHHHhhcC
Q 014196 279 PLVPESLIEILTW----EE---KPKCQELSAYILMILAHQSSEQRDKMAK----------------SGIVHVSLQLALLG 335 (429)
Q Consensus 279 ~~i~~~Lv~~L~~----~~---s~~~~e~A~~~L~~L~~~~~~~~~~i~~----------------~G~v~~L~~ll~~~ 335 (429)
...+..|+++|.. .. -...-..-+.+|..+|..+...|+.+.. ...-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 1123356666542 11 1123345566777777766666666654 23566788888887
Q ss_pred CHHHHHHHHHHHHHHHh
Q 014196 336 SPLAQRRASKLLQWFKD 352 (429)
Q Consensus 336 ~~~~k~~A~~lL~~l~~ 352 (429)
.+..|..++.+|-.+.+
T Consensus 321 ~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCK 337 (446)
T ss_pred CchHHHHHHHHHHHHHh
Confidence 78889888887755553
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.01 Score=60.59 Aligned_cols=256 Identities=16% Similarity=0.120 Sum_probs=158.8
Q ss_pred chhhHHHHHHHHHhh-cccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhh---hchHHHHHHHhcCc
Q 014196 40 SRTLKNINCQEEKQV-IIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAK---EDVKIKKLMAELGV 115 (429)
Q Consensus 40 N~~Lr~lI~~W~~~~-~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~---~~~~~r~~i~~~G~ 115 (429)
|-.-|..+-.|-.-. +++++..- .--...+..|...|..++.+++.-+=..+..+-. .+|.. +--...
T Consensus 180 n~~tR~flv~Wl~~Lds~P~~~m~-----~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~ 251 (675)
T KOG0212|consen 180 NPMTRQFLVSWLYVLDSVPDLEMI-----SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDM 251 (675)
T ss_pred CchHHHHHHHHHHHHhcCCcHHHH-----hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccc
Confidence 445677778887543 11111000 0113456778888888888777444333333221 12221 122356
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCH-HHHHHHHH---HHHHhhccCCCcc
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDE-STRHEFGE---LLLSLSSLANTHI 191 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~-~~~~~aa~---~L~~Ls~~~~~~~ 191 (429)
++.||.-+.++++.+|..|+.-+.....-.. +.....-.|.+..+..++...+. ..++.+.. .|..+......+.
T Consensus 252 i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g-~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~ 330 (675)
T KOG0212|consen 252 INVLVPHLQSSEPEIQLKALTWIQEFVKIPG-RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKE 330 (675)
T ss_pred hhhccccccCCcHHHHHHHHHHHHHHhcCCC-cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcc
Confidence 8899999999999999999877776655431 22333345666666777765443 34443332 3555554444444
Q ss_pred ccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChh
Q 014196 192 PLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTST 270 (429)
Q Consensus 192 ~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e 270 (429)
.|.-...+..|.+.+.++.. +.|-.++..+..|-....|.........++.|+.-|+|++ +++..++.+|.++|.+++
T Consensus 331 ~id~~~ii~vl~~~l~~~~~-~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 331 EIDYGSIIEVLTKYLSDDRE-ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred ccchHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 44334467788888877775 7898899888888776667766677799999999999885 999999999999999765
Q ss_pred cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
....+ + .. ..|+++.. ....-....+.-++..+|.
T Consensus 410 ~~~~~-~--fl-~sLL~~f~-e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 410 SPNLR-K--FL-LSLLEMFK-EDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred cccHH-H--HH-HHHHHHHh-hhhHHHHhhhhHHHHHHHH
Confidence 44211 0 01 13444444 3444455667777777775
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0029 Score=65.41 Aligned_cols=254 Identities=13% Similarity=0.068 Sum_probs=155.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC------
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT------ 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~------ 145 (429)
..+..+......++..++..|+..|-.|.... +.-+.+ ....+..+.+++.+++.+|+.++.-++...
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~~-----Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKAC-----YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHHH-----HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34445777777888888999999888887522 322332 345688999999999999966655543221
Q ss_pred CchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCC--cHHHHHHHHHHHH
Q 014196 146 YTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGS--SVETKELCIGALY 223 (429)
Q Consensus 146 ~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~~A~~aL~ 223 (429)
+.+...+.+ .++..+...++..+..+|-.|+.+|..+.... ..|. -..|-+-+.+.. .....+.......
T Consensus 272 e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS---ee~i----~QTLdKKlms~lRRkr~ahkrpk~l~s 343 (823)
T KOG2259|consen 272 ESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS---EEII----QQTLDKKLMSRLRRKRTAHKRPKALYS 343 (823)
T ss_pred hhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhH---HHHH----HHHHHHHHhhhhhhhhhcccchHHHHh
Confidence 112222222 35566677777777777777877776665322 1110 011111000000 0001111111111
Q ss_pred Hh--cc------------CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHH
Q 014196 224 NL--SA------------VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIE 287 (429)
Q Consensus 224 nL--s~------------~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~ 287 (429)
+. +. .++.-.-++..|+..+++.=|.|.= ++++.|++.++.|+.+ |.-...-. .-||+
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~al------dfLvD 417 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRAL------DFLVD 417 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHH------HHHHH
Confidence 11 00 1122345788899999998887753 8999999999999874 44333222 37999
Q ss_pred hcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 288 ILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 288 ~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
+++ +.-..++..|+.+|..|+.+ ..+++.-++.++..+.+.+.++++....+|++.+-
T Consensus 418 MfN-DE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 418 MFN-DEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNARV 475 (823)
T ss_pred Hhc-cHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 998 77888999999999988764 33344457777888888888888888877777664
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.06 Score=53.02 Aligned_cols=185 Identities=19% Similarity=0.178 Sum_probs=126.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
..+..+++.+.+.+...+..|+..+..+.. .-+++.|..+|.+.++.++..|+.+|..+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGDP------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-------
Confidence 457788888888888888888887555432 22489999999999999999999988665322
Q ss_pred HHhcCccchhhhhcc-CCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcH-----------HHHHHHH
Q 014196 152 MVEAGILTKLPKNVD-AVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSV-----------ETKELCI 219 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-----------~~~~~A~ 219 (429)
.+++.|+.++. +.+..+|..++.+|..+-. ..++.+|+.++.+.... ..+..+.
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 23566778787 4777888888888887662 23477888888775521 1233333
Q ss_pred HHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHH
Q 014196 220 GALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQ 298 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~ 298 (429)
.+|..+ -+...++.+...+.+.. .++..+...|..+.... ..+.+.+...+. +.+...+
T Consensus 171 ~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~-~~~~~vr 230 (335)
T COG1413 171 EALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALS-DESLEVR 230 (335)
T ss_pred HHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhc-CCCHHHH
Confidence 333322 22346778888888775 78888888888776543 223336777776 6777777
Q ss_pred HHHHHHHHHH
Q 014196 299 ELSAYILMIL 308 (429)
Q Consensus 299 e~A~~~L~~L 308 (429)
..++.+|..+
T Consensus 231 ~~~~~~l~~~ 240 (335)
T COG1413 231 KAALLALGEI 240 (335)
T ss_pred HHHHHHhccc
Confidence 7776666554
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0081 Score=55.71 Aligned_cols=179 Identities=17% Similarity=0.103 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHHHhhccC---CCcccccc--CCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcH
Q 014196 167 AVDESTRHEFGELLLSLSSLA---NTHIPLSS--SEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVV 241 (429)
Q Consensus 167 ~~~~~~~~~aa~~L~~Ls~~~---~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v 241 (429)
+.+.+.|.++..-|..+.... +....+.. ...+..+...+.+..+ .+...|+.++..|+..-.+.-.-.-...+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs-~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS-KVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 445667777777777776544 12222211 1344556666655554 57778999999998754443222234678
Q ss_pred HHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCH---H-HH
Q 014196 242 HTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSS---E-QR 316 (429)
Q Consensus 242 ~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~---~-~~ 316 (429)
|.|+..+.+.. -+.+.|..+|..++.+-..-..+. .+.+...+. +.++..+..++..|..+....+ . ..
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~-~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLK-SKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHh-CCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 99999998875 778888888988887433111111 224555566 7889999999988887765433 1 11
Q ss_pred HHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 317 DKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 317 ~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
....-..+++.+..++.++++.+|+.|..++..+..
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 111113467888889999999999999998877765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.017 Score=50.19 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=96.7
Q ss_pred ccccCCcHHHHHHhhhcCCc-----HHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC--c-chHHHHHHHHH
Q 014196 192 PLSSSEILPFLVGILESGSS-----VETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK--E-RLSEKSLATLG 263 (429)
Q Consensus 192 ~i~~~g~i~~Lv~lL~~~~~-----~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~--~-~~~~~a~~~L~ 263 (429)
.+.+.|++..|++++.++.. ......++.++..|-.|.-.-...++.-.|..++..+... + .+.+.|+++|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 34467899999999999873 2456778899999988876667788888888888887643 3 88999999999
Q ss_pred HhhCChhc-HHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC-CHHHHHHHH
Q 014196 264 NLVVTSTG-KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ-SSEQRDKMA 320 (429)
Q Consensus 264 ~La~~~e~-~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~ 320 (429)
+++.+... ...+.+ +--.+.|+..|. ..++..|.+|+..+..|..+ ++.-|+.+.
T Consensus 86 s~Vl~S~~ly~~V~~-evt~~~Li~hLq-~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQ-EVTLESLIRHLQ-VSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHhCCHHHHHHHhc-cCCHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 99986544 555555 444568999998 68889999999988888764 344555443
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0022 Score=41.99 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 313 SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 313 ~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
++.+..+++.|+++.|+.++.++++++++.|.|.|+++.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347888999999999999999889999999999999875
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.038 Score=54.37 Aligned_cols=186 Identities=22% Similarity=0.212 Sum_probs=126.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 114 G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
-.++.++..+.+.+..++..|+..|..+.. .-+++.+..++...+...|..++.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 458889999999999999999888544321 224667788888888888888777555433
Q ss_pred ccCCcHHHHHHhhhc-CCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-c------------hHHHHH
Q 014196 194 SSSEILPFLVGILES-GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-R------------LSEKSL 259 (429)
Q Consensus 194 ~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~------------~~~~a~ 259 (429)
...+++.|++++.. .+. .++..|..+|..+-.. .++.+++..+.+.. . ++..+.
T Consensus 103 -~~~a~~~li~~l~~d~~~-~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 103 -DPEAVPPLVELLENDENE-GVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred -ChhHHHHHHHHHHcCCcH-hHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 34578999999995 555 7899999998876532 23778888887653 1 122222
Q ss_pred HHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHH
Q 014196 260 ATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLA 339 (429)
Q Consensus 260 ~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~ 339 (429)
..|..+ .. +..++.+.+.+. .....++..|..+|..+...+ ..+.+.+...+...+..+
T Consensus 171 ~~l~~~----------~~-~~~~~~l~~~l~-~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 171 EALGEL----------GD-PEAIPLLIELLE-DEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHc----------CC-hhhhHHHHHHHh-CchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 222221 11 223347888887 677788999999888876543 345567777777777777
Q ss_pred HHHHHHHHHHHHh
Q 014196 340 QRRASKLLQWFKD 352 (429)
Q Consensus 340 k~~A~~lL~~l~~ 352 (429)
+.++...|..+..
T Consensus 230 r~~~~~~l~~~~~ 242 (335)
T COG1413 230 RKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHhcccCc
Confidence 7777776666554
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.15 Score=54.37 Aligned_cols=253 Identities=15% Similarity=0.150 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.++..|...+.|++.++..+++|+....++-+..|+.-..+ +++-..+|.+.+..+...++..+..++..+.++-
T Consensus 140 ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 140 ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH
Confidence 45566777777888888888888777776666555433322 2222333333333333333333333332211110
Q ss_pred HHHHh-----------------------cCccc--------hhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCc
Q 014196 150 AIMVE-----------------------AGILT--------KLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEI 198 (429)
Q Consensus 150 ~~iv~-----------------------~G~i~--------~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~ 198 (429)
...-+ +|.-+ .+.++|...+.+..+....+|..++.+.+...-++.+-.
T Consensus 215 ~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAIL 294 (866)
T KOG1062|consen 215 SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAIL 294 (866)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHH
Confidence 00000 11111 122333444444444444555555544433333332211
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC-ChhHHH----------hcCcH----HHHHHhccCCc-chHHHHHHHH
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSAVLD-NARPMV----------SNGVV----HTLLKLCSMKE-RLSEKSLATL 262 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv----------~~G~v----~~Lv~lL~~~~-~~~~~a~~~L 262 (429)
.+..-.++.-.+...++.-|+.+|...-.+++ |...+. +..+| ..++++|+|+| .++++|+..+
T Consensus 295 YE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs 374 (866)
T KOG1062|consen 295 YECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS 374 (866)
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 12222222212222566677777776554433 322221 11223 24788999998 8999999999
Q ss_pred HHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh-CCHHH------H-HHHHhCC------chHHH
Q 014196 263 GNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH-QSSEQ------R-DKMAKSG------IVHVS 328 (429)
Q Consensus 263 ~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~-~~~~~------~-~~i~~~G------~v~~L 328 (429)
..|.... +-..|++ -|+++|. ..++..+...++-+..++. +.|+. . ..+..+| ++..|
T Consensus 375 ~~lvn~~-Nv~~mv~------eLl~fL~-~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nl 446 (866)
T KOG1062|consen 375 YALVNES-NVRVMVK------ELLEFLE-SSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNL 446 (866)
T ss_pred HHHhccc-cHHHHHH------HHHHHHH-hccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHH
Confidence 9887643 3344443 4778887 4567777777666666664 33321 1 2222234 77778
Q ss_pred HHHhhcC
Q 014196 329 LQLALLG 335 (429)
Q Consensus 329 ~~ll~~~ 335 (429)
+.++.++
T Consensus 447 l~LIa~~ 453 (866)
T KOG1062|consen 447 LRLIANA 453 (866)
T ss_pred HHHHhcC
Confidence 8887776
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=59.52 Aligned_cols=197 Identities=13% Similarity=0.070 Sum_probs=135.3
Q ss_pred HHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc-CCCccccccCCcHHHHHHhhhcCCcHH
Q 014196 135 IKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLSSSEILPFLVGILESGSSVE 213 (429)
Q Consensus 135 ~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~ 213 (429)
+..|..++..-.--|..+.+...+++|+++|..++.-..-.+...++|+-.- ...+..+...|.|..|+.++.+.+. .
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd-a 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD-A 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh-h
Confidence 3344444444322367777888899999999876644433445566666532 2445566689999999999998876 7
Q ss_pred HHHHHHHHHHHhccCCC-C-hhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC----hhcHHHHhcC---CCChH
Q 014196 214 TKELCIGALYNLSAVLD-N-ARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT----STGKKAMEDS---PLVPE 283 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~-n-~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~----~e~~~~i~~~---~~i~~ 283 (429)
++.+..|.|+++--+.. + +-..+..-++..++++..|+. .+++.++.+|.|+..+ ++.+...... .-...
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk 568 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFK 568 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHH
Confidence 89999999999986443 3 345566677899999999987 9999999999999762 1122211111 11123
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHh-CCchHHHHHHhh
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAK-SGIVHVSLQLAL 333 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~-~G~v~~L~~ll~ 333 (429)
.|++.++ ..+|-..+..+++|.++++.+++.+..+.+ ...+..+.+.+.
T Consensus 569 ~l~~k~e-~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 569 RLIDKYE-ENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred HHHHHHH-hcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 4666666 677777788899999999887777777776 345555555543
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.058 Score=57.01 Aligned_cols=296 Identities=11% Similarity=0.128 Sum_probs=167.1
Q ss_pred CHHHHHHHHHHHHHHh---h---hchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCcc
Q 014196 85 SWEEKEMAAKEIEKLA---K---EDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGIL 158 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La---~---~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i 158 (429)
+..+|..|..+|.+-. + .++..|..| ....+..-.++|.+++.+|..+|..|..-..+.-..-.+...+
T Consensus 187 s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i-----MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alf 261 (859)
T KOG1241|consen 187 SAAVRLAALNALYNSLEFTKANFNNEMERNYI-----MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALF 261 (859)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhccHhhhcee-----eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777776532 1 112233332 3445666678899999999999988875432222222222233
Q ss_pred chhhhhccCCCHHHHHHHHHHHHHhhcc------------CCCccc----cc---cCCcHHHHHHhhhcC------CcHH
Q 014196 159 TKLPKNVDAVDESTRHEFGELLLSLSSL------------ANTHIP----LS---SSEILPFLVGILESG------SSVE 213 (429)
Q Consensus 159 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~------------~~~~~~----i~---~~g~i~~Lv~lL~~~------~~~~ 213 (429)
..-+.-+.+.+.++.-.+...-.+++.- +.+.++ +. -.+.+|.|+++|... |...
T Consensus 262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn 341 (859)
T KOG1241|consen 262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN 341 (859)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence 3333444555555544444333334321 112221 11 246788899988752 1112
Q ss_pred HHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhc----cCCc-chHHHHHHHHHHhhCCh--hcHHHHhcCCCChHHHH
Q 014196 214 TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC----SMKE-RLSEKSLATLGNLVVTS--TGKKAMEDSPLVPESLI 286 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL----~~~~-~~~~~a~~~L~~La~~~--e~~~~i~~~~~i~~~Lv 286 (429)
.-+.|-.+|.-++.. +...+||+++.++ +.++ ..++.++.+++.+-..| .....++. ++++ .++
T Consensus 342 p~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~-qalp-~ii 412 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVI-QALP-SII 412 (859)
T ss_pred HHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHh-hhhH-HHH
Confidence 334455555544432 3334555655554 4556 77888888888776644 44555665 5664 999
Q ss_pred HhcccCCChhHHHHHHHHHHHHhhCCHHHHH-HHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-c-cCCCCCC-
Q 014196 287 EILTWEEKPKCQELSAYILMILAHQSSEQRD-KMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER-Q-AKMGPHS- 362 (429)
Q Consensus 287 ~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~-~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~-~-~~~~~~~- 362 (429)
.++. +.+-.+++.+.+.|+.+|.+-++.+. .....+.++.|+.=+. ..|++-.+++|.+-.|.+.- + .++. +.
T Consensus 413 ~lm~-D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~-~qt 489 (859)
T KOG1241|consen 413 NLMS-DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSN-GQT 489 (859)
T ss_pred HHhc-CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCC-CCC
Confidence 9998 78888999999999999986553221 1111233333333222 37889999999988888642 2 1111 11
Q ss_pred ---CCCcccc-c-----cCCCC--ChhhhHHHHHHHHHHHHHHHHH
Q 014196 363 ---GPQTRRV-S-----IGSPV--SPREAQEGKKMMKNLVQQSLHK 397 (429)
Q Consensus 363 ---~~~~~~~-~-----~~~~~--~~~~~~~~k~~l~~~~~~~~~~ 397 (429)
-|.++.+ . .+..+ .-.+|..+=.||-+||+.|++-
T Consensus 490 ~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 490 DPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred CccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 1223322 1 11222 4567788888888888766654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.17 Score=55.45 Aligned_cols=193 Identities=11% Similarity=0.042 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHH-hccCCCchHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQ-LANGTYTNKA 150 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~n-La~~~~~nk~ 150 (429)
+.+|-.++-|-+ .--+..|+.-|.++..-.+=.-..-..-|+.|-.+.+|+++-.+++---+-+=.. ||.+. ..+.
T Consensus 472 eQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~-SCQ~ 548 (1387)
T KOG1517|consen 472 EQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDP-SCQA 548 (1387)
T ss_pred HhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCc-hhHH
Confidence 445555555544 2334456666665554444333444567999999999999988876543333222 56664 5788
Q ss_pred HHHhcCccchhhhhccCCC---HHHHHHHHHHHHHhhccCC-CccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 151 IMVEAGILTKLPKNVDAVD---ESTRHEFGELLLSLSSLAN-THIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~---~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
.+++.++-...+..|.... .+-|..+|-+|..+..+-. .+...-+.+.|..-...|.++..+-++.-++-+|..|=
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 8888877777777776522 4556666677887774421 22233356777777778877533357888888888885
Q ss_pred c-CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 227 A-VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 227 ~-~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
. .++++..=++.++...|+.+|+|+- +++..|+.+|..+..
T Consensus 629 ~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 629 EDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred hhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 4 6777777788999999999999985 888889999987665
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.028 Score=58.09 Aligned_cols=227 Identities=18% Similarity=0.196 Sum_probs=135.3
Q ss_pred cCcHHHHHHhhc---CCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCC
Q 014196 113 LGVIQMLVSMVS---TEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANT 189 (429)
Q Consensus 113 ~G~i~~Lv~lL~---s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~ 189 (429)
.+.+|.|..+|. +..+.+|++|..+...+...-...... -.+|.++.-+.......+..++..|..++...+.
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~ 287 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPK 287 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchH
Confidence 344555555544 345677777766554443221111111 1122222222222345666777788877755444
Q ss_pred ccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCCh
Q 014196 190 HIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTS 269 (429)
Q Consensus 190 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~ 269 (429)
.-...-...||.|.+.|.+..+ ++++.+..+|.+++..-+|.... -.+|.|++.+.++.....+|+..|..-.--
T Consensus 288 qLs~~lp~iiP~lsevl~DT~~-evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV- 362 (569)
T KOG1242|consen 288 QLSLCLPDLIPVLSEVLWDTKP-EVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSCYTPECLDSLGATTFV- 362 (569)
T ss_pred HHHHHHhHhhHHHHHHHccCCH-HHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCcccchHHHHHhhcceeee-
Confidence 3344457789999999998887 89999999999999877776522 257889999998864666666655432110
Q ss_pred hcHHHHhcCCCChHHHHHhccc---CCChhHHHHHHHHHHHHhhC--CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHH
Q 014196 270 TGKKAMEDSPLVPESLIEILTW---EEKPKCQELSAYILMILAHQ--SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRAS 344 (429)
Q Consensus 270 e~~~~i~~~~~i~~~Lv~~L~~---~~s~~~~e~A~~~L~~L~~~--~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~ 344 (429)
+.+....+ ..+|.+|.+ ..+...+..++.+.+|+|.- ++......+. -.+|.|-..+...-|++|.-|+
T Consensus 363 ----~~V~~psL-almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaa 436 (569)
T KOG1242|consen 363 ----AEVDAPSL-ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAA 436 (569)
T ss_pred ----eeecchhH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHH
Confidence 11222332 244444432 35566678899999999973 3332222221 2567777777766789999999
Q ss_pred HHH-HHHHhcc
Q 014196 345 KLL-QWFKDER 354 (429)
Q Consensus 345 ~lL-~~l~~~~ 354 (429)
+.| ..+.+-+
T Consensus 437 rAL~~l~e~~g 447 (569)
T KOG1242|consen 437 RALGALLERLG 447 (569)
T ss_pred HHHHHHHHHHH
Confidence 887 4444433
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.003 Score=44.63 Aligned_cols=55 Identities=20% Similarity=0.113 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 014196 86 WEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQL 141 (429)
Q Consensus 86 ~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nL 141 (429)
+.+|..|+..|..++...++.-.. ....+++.|+.+|.++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 467889999999988655443222 3356799999999999999999999999875
|
... |
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.12 Score=49.62 Aligned_cols=274 Identities=16% Similarity=0.210 Sum_probs=167.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHH----HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKI----KKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~----r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.|-..|..++..+|.-++..+..+..+.+.| -..++.+|..+.++.+.-..|.++..+|...+..++... ..-
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp-aal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP-AAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH-HHH
Confidence 445555566667888888998888877655422 345668999999999999999999999999999999886 467
Q ss_pred HHHHhcCccchhhhh--ccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhc-CCcHHHHHHHHHHHHHh
Q 014196 150 AIMVEAGILTKLPKN--VDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILES-GSSVETKELCIGALYNL 225 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~l--L~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~nL 225 (429)
..|.+....+.+-.. --..+.-.|.....++..+++.. ......-.+|.+..|..-|+- .+. -++.+++...+.|
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDt-LVianciElvteL 241 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDT-LVIANCIELVTEL 241 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcce-eehhhHHHHHHHH
Confidence 777777766655221 11111223333444444554322 222233356777766665554 444 4677888888999
Q ss_pred ccCCCChhHHHhcCcHHHHHHhccCC--cchHH-HHHHHH----HHhhCChhcHHHHhcCC-CChHHHHHhcccCCChhH
Q 014196 226 SAVLDNARPMVSNGVVHTLLKLCSMK--ERLSE-KSLATL----GNLVVTSTGKKAMEDSP-LVPESLIEILTWEEKPKC 297 (429)
Q Consensus 226 s~~~~n~~~iv~~G~v~~Lv~lL~~~--~~~~~-~a~~~L----~~La~~~e~~~~i~~~~-~i~~~Lv~~L~~~~s~~~ 297 (429)
+.....++.+.+.|.+..+..++... ++.-. +++... .+.+-.+-.-+++++.- -.+....+++. ..++..
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE-mnDpda 320 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE-MNDPDA 320 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh-cCCchH
Confidence 98888888888999999999988633 22222 133222 22222111222332210 00112234455 567889
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhh---cCCHHHHHHHH-HHHHHHHh
Q 014196 298 QELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLAL---LGSPLAQRRAS-KLLQWFKD 352 (429)
Q Consensus 298 ~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~---~~~~~~k~~A~-~lL~~l~~ 352 (429)
++.|+.+++.+.+. .+..+.+..-| -|..-.++- +.+.+++..|+ ..|..+..
T Consensus 321 ieaAiDalGilGSn-teGadlllkTg-ppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 321 IEAAIDALGILGSN-TEGADLLLKTG-PPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHhccCC-cchhHHHhccC-ChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 99999999988654 45666676666 333333332 23555554444 56666654
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.011 Score=47.49 Aligned_cols=68 Identities=12% Similarity=0.206 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcc-cCCChhHHHHHHHHHHHHhhCCHHHHHHHHhC
Q 014196 254 LSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILT-WEEKPKCQELSAYILMILAHQSSEQRDKMAKS 322 (429)
Q Consensus 254 ~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~-~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~ 322 (429)
++...+.+|+||+. +++.+..+.+.||++ .++..-. ...+|-.+|+|+.++.+||.+++++++.+.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~-liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIP-LILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChH-HHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 45677889999997 799999999999986 6777543 24789999999999999999999998887763
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.16 Score=52.68 Aligned_cols=300 Identities=13% Similarity=0.085 Sum_probs=175.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHH-HHHHHHHHHHhccCCCchHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGR-RRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~-~~~A~~aL~nLa~~~~~nk~~ 151 (429)
..+.+.+.+...+...+..|+..+..+.+.. .-..+.+.+.+..|-....+..... ++.+.-+.-....+-. .
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~ 208 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----P 208 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----C
Confidence 4456666677767778888888888887644 3456777788888888877654333 3323333222222211 2
Q ss_pred HHhcCccchhhhhccC---CCHHHHHHHHHHHHHhh-ccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 152 MVEAGILTKLPKNVDA---VDESTRHEFGELLLSLS-SLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~---~~~~~~~~aa~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
-.+.+.++.++.++.+ ....+|+.+..+...+- ..+.+. -.-.+|+++.-+.... .+.+..++..|..++.
T Consensus 209 ~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~k-WrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 209 PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAK-WRTKMASLELLGAMAD 283 (569)
T ss_pred CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHh-hhhHHHHHHHHHHHHH
Confidence 2344556666666643 33566665554443332 112221 1223565555444443 3678899999999988
Q ss_pred CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHH
Q 014196 228 VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306 (429)
Q Consensus 228 ~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~ 306 (429)
+....-......+||.+.+.|-|.. ++++.+..+|..++..-++-. |.. ++|.|++.+. +.+.... .++..|.
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~---~ip~Lld~l~-dp~~~~~-e~~~~L~ 357 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK---IIPTLLDALA-DPSCYTP-ECLDSLG 357 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH---HHHHHHHHhc-CcccchH-HHHHhhc
Confidence 8777777777899999999999876 889999999988876433333 332 2358999887 4443332 3334343
Q ss_pred HHh--hC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCCCCCCCccc----cc--cCCCCCh
Q 014196 307 ILA--HQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRR----VS--IGSPVSP 377 (429)
Q Consensus 307 ~L~--~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~----~~--~~~~~~~ 377 (429)
.-. +. ++..... .+|.|-.-+...+...+++++.+..++...-+ .+....|-++. +. +..+ -.
T Consensus 358 ~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr~t~~IidNm~~Lve--Dp~~lapfl~~Llp~lk~~~~d~-~P 429 (569)
T KOG1242|consen 358 ATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKRKTAIIIDNMCKLVE--DPKDLAPFLPSLLPGLKENLDDA-VP 429 (569)
T ss_pred ceeeeeeecchhHHH-----HHHHHHHHHhhccchhhhhHHHHHHHHHHhhc--CHHHHhhhHHHHhhHHHHHhcCC-Ch
Confidence 211 00 1111111 24555555556677788999999988886431 01111233332 22 2222 56
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 014196 378 REAQEGKKMMKNLVQQSLHK 397 (429)
Q Consensus 378 ~~~~~~k~~l~~~~~~~~~~ 397 (429)
+-|.-+-|||-.+++.--..
T Consensus 430 EvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 430 EVRAVAARALGALLERLGEV 449 (569)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 77888888887777754333
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.1 Score=50.23 Aligned_cols=235 Identities=13% Similarity=0.107 Sum_probs=152.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch----HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcc
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN----KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHI 191 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n----k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~ 191 (429)
.|.|-.=|..+|..++.-++..++.+..+.+.| -..++++|.++.++.++...+.++-..|...+..++..++.-.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 334444455677888888888888887777655 3456689999999999987777766666678888887765544
Q ss_pred ccccCCcHH--HHHHhhhcCCcHHHHHHHHHHHHHhcc-CCCChhHHHhcCcHHHHHHhccCC-c-chHHHHHHHHHHhh
Q 014196 192 PLSSSEILP--FLVGILESGSSVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLCSMK-E-RLSEKSLATLGNLV 266 (429)
Q Consensus 192 ~i~~~g~i~--~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La 266 (429)
.|-.+.... .++.+-...+. -++...+..+..+.+ .++.....-..|.+..|..=|+.. + -+...++.....|+
T Consensus 164 aiFeSellDdlhlrnlaakcnd-iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCND-IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred HhcccccCChHHHhHHHhhhhh-HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 454433333 33443333333 356667777777665 444556666788888887777653 4 56677888888999
Q ss_pred CChhcHHHHhcCCCChHHHHHhccc-CCChhHHHHHHHHHHHHhhC------CH-HHHHHHHhCCchHHHHHHhhcCCHH
Q 014196 267 VTSTGKKAMEDSPLVPESLIEILTW-EEKPKCQELSAYILMILAHQ------SS-EQRDKMAKSGIVHVSLQLALLGSPL 338 (429)
Q Consensus 267 ~~~e~~~~i~~~~~i~~~Lv~~L~~-~~s~~~~e~A~~~L~~L~~~------~~-~~~~~i~~~G~v~~L~~ll~~~~~~ 338 (429)
....+|+.+.+.|- +..+..++.. +..|-.+-.+......+-.. ++ ..++..+- ++..-++.....++.
T Consensus 243 eteHgreflaQegl-IdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealii--aidgsfEmiEmnDpd 319 (524)
T KOG4413|consen 243 ETEHGREFLAQEGL-IDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIEMNDPD 319 (524)
T ss_pred HHhhhhhhcchhhH-HHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhhcCCch
Confidence 99999998888554 4467777652 23343444444444333221 22 12222222 456667778888899
Q ss_pred HHHHHHHHHHHHHhcc
Q 014196 339 AQRRASKLLQWFKDER 354 (429)
Q Consensus 339 ~k~~A~~lL~~l~~~~ 354 (429)
++..|...|+.++..-
T Consensus 320 aieaAiDalGilGSnt 335 (524)
T KOG4413|consen 320 AIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHHhccCCc
Confidence 9999999999988643
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.017 Score=58.74 Aligned_cols=191 Identities=8% Similarity=0.010 Sum_probs=132.0
Q ss_pred HHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCH
Q 014196 91 MAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDE 170 (429)
Q Consensus 91 ~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~ 170 (429)
.++..|..+++.-.-.|.-+.+..++++|++.|..++..+.--+..+++|....-+.-+..+.+.|.|+.|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 34455666776555688888999999999999999887777778889999887764448889999999999999988888
Q ss_pred HHHHHHHHHHHHhhccCCCcc--ccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCC---hhHHHhc---C-c
Q 014196 171 STRHEFGELLLSLSSLANTHI--PLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV-LDN---ARPMVSN---G-V 240 (429)
Q Consensus 171 ~~~~~aa~~L~~Ls~~~~~~~--~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n---~~~iv~~---G-~ 240 (429)
..+.+..+.|+.+-.++++.. .....-++..++.+..++.- .++..++..|.|+..+ ..| +...... . .
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~-~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCF-KVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCccc-ccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 888888899998887775543 23345567888898888776 7889999999998753 333 2111111 1 2
Q ss_pred HHHHHHhccCC-cchHHHHHHHHHHhhCChhc-HHHHhcCCCCh
Q 014196 241 VHTLLKLCSMK-ERLSEKSLATLGNLVVTSTG-KKAMEDSPLVP 282 (429)
Q Consensus 241 v~~Lv~lL~~~-~~~~~~a~~~L~~La~~~e~-~~~i~~~~~i~ 282 (429)
+..|++-+... +-..+..+.+|.+++.+++. +..+.+...+.
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L 610 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDML 610 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHH
Confidence 33444444332 32334446677766665544 44444444433
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.018 Score=47.49 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 014196 70 DCVLLQKSVKRLHF-GSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 70 ~~~~l~~lv~~L~~-~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 143 (429)
+-..+..|++.|.. .++....-|+..|..++++.|..|..+.+.|+-+.+..++.++|++++..|+.++..+-.
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46678999999954 366666779999999999999999999899999999999999999999999999877654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.13 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=16.9
Q ss_pred HHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 243 TLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 243 ~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
-++.+|..++ +++++++.+...|+.
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhhh
Confidence 3445555666 888888887776665
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.24 Score=50.87 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=133.1
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHH-hcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccc-ccCCcHHHHH
Q 014196 126 EVIGRRRAAIKALIQLANGTYTNKAIMV-EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL-SSSEILPFLV 203 (429)
Q Consensus 126 ~~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv 203 (429)
-++..+..-+.-|..|-.-.+ ...+- -...++-|...|.....+++..+-.+|.++-..=.+++.. --...++.|+
T Consensus 179 ~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv 256 (675)
T KOG0212|consen 179 INPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLV 256 (675)
T ss_pred CCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhcc
Confidence 355555555544444433321 12111 1123344566666666777755544444332111122222 2345678888
Q ss_pred HhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcc--hHHHHH---HHHHHhhCChhcHHHHhcC
Q 014196 204 GILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKER--LSEKSL---ATLGNLVVTSTGKKAMEDS 278 (429)
Q Consensus 204 ~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~--~~~~a~---~~L~~La~~~e~~~~i~~~ 278 (429)
.-+.+..+ .++..|+..+.....-..+....--.|++..++.++.+.+. ..+.+. ..|..++..+...+. .+.
T Consensus 257 ~~l~ss~~-~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~ 334 (675)
T KOG0212|consen 257 PHLQSSEP-EIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDY 334 (675)
T ss_pred ccccCCcH-HHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cch
Confidence 88888877 78888999998888766555555557888899999987642 333322 234455555555544 566
Q ss_pred CCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 279 PLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 279 ~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
|.++..|-+++. ++....+-.+..-+..+-+.-+. .-......+.+.|+.-+.+.++.+...+..+|..+..+.
T Consensus 335 ~~ii~vl~~~l~-~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 335 GSIIEVLTKYLS-DDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHHHHHHHHhh-cchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 777778888887 67777776666555544443221 212333467888888888888888888888777776544
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0085 Score=42.23 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=44.1
Q ss_pred hhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 014196 295 PKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWF 350 (429)
Q Consensus 295 ~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l 350 (429)
+..|+.|+.+|.+++...++..+. ....++|.|+.++.+.++.++..|+|.|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 357889999999988766655544 3346799999999999999999999998754
|
... |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.6 Score=49.71 Aligned_cols=230 Identities=15% Similarity=0.207 Sum_probs=131.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
++.+=..++++|+..+..|+.+...+-..-...+..-...+++|.++.++.+++.-++..++|+|+.++.+.. ..+.
T Consensus 366 l~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~---e~~~ 442 (859)
T KOG1241|consen 366 LPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP---EAII 442 (859)
T ss_pred HHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch---hhcc
Confidence 3444457889999999999999998876544455444556789999999998888889999999999987653 2222
Q ss_pred hcCccc-hhhhhccCCC--HHHHHHHHHHHHHhhccC-----CC-ccccccCCcHHHHHHhh-h-----cCCcHHHHHHH
Q 014196 154 EAGILT-KLPKNVDAVD--ESTRHEFGELLLSLSSLA-----NT-HIPLSSSEILPFLVGIL-E-----SGSSVETKELC 218 (429)
Q Consensus 154 ~~G~i~-~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~-----~~-~~~i~~~g~i~~Lv~lL-~-----~~~~~~~~~~A 218 (429)
..--.+ .+.-+++... +..-.++++++.+|+... .+ ...... ...+.++.-| . +++...+|..|
T Consensus 443 n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred cHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHH
Confidence 111111 1222233222 445567888999998321 11 111212 2333333322 2 23334688889
Q ss_pred HHHHHHhccCC-CChhHHHhcCcHHHHHH---------hcc--CC---cchHHHHHHHHHHhhC-ChhcHHHHhcCCCCh
Q 014196 219 IGALYNLSAVL-DNARPMVSNGVVHTLLK---------LCS--MK---ERLSEKSLATLGNLVV-TSTGKKAMEDSPLVP 282 (429)
Q Consensus 219 ~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~---------lL~--~~---~~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~ 282 (429)
..+|..|-.+. ..+..++ .+....++. .+. |. .+++..-+.+|..+-. ....+..+.+ .+.
T Consensus 522 YeALmElIk~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d--~iM 598 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD--QIM 598 (859)
T ss_pred HHHHHHHHHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH--HHH
Confidence 99999988754 4444443 233333333 222 11 1455555666664433 2223333333 233
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 283 ESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 283 ~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
..+++++....+..+.|.|..++..++.
T Consensus 599 ~lflri~~s~~s~~v~e~a~laV~tl~~ 626 (859)
T KOG1241|consen 599 GLFLRIFESKRSAVVHEEAFLAVSTLAE 626 (859)
T ss_pred HHHHHHHcCCccccchHHHHHHHHHHHH
Confidence 3677777733566667776666665553
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.13 Score=56.32 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=105.6
Q ss_pred HHHHHHHHhh-ccCCCcccccc----CCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc
Q 014196 175 EFGELLLSLS-SLANTHIPLSS----SEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 175 ~aa~~L~~Ls-~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 249 (429)
.+..+|.|+- .+++....+++ -|-.+.+...|......+++.-|+.++.-+..+.+-...+++.|.+..|+.+|.
T Consensus 1744 m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1744 MTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred HHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHh
Confidence 3456788875 34455555553 466777888887654337888899988888888877899999999999999997
Q ss_pred CCcchHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 250 MKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 250 ~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
.....++.++.+|+.|+.+++...+..++||+. -+.+++-.+.+++.+..++..|..+.+
T Consensus 1824 S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~-yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1824 SQPSMRARVLDVLYALSSNGQIGKEALEHGGLM-YILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchh-hhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 766899999999999999999888888989987 677777545677777778888877764
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.0057 Score=56.13 Aligned_cols=53 Identities=17% Similarity=0.068 Sum_probs=45.0
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHh-ccc--cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQS-KSA--RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~-g~~--~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|-+|++.=.+ +|||| |++-+++ ||. +|+-+|.-..++||.+|+..|..+...|
T Consensus 221 ~~~pvi~psg-Ity~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n 278 (284)
T KOG4642|consen 221 MREPVITPSG-ITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKEN 278 (284)
T ss_pred hcCCccCccc-cchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhc
Confidence 3456665554 99999 9998876 777 9999999889999999999999998877
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.025 Score=58.81 Aligned_cols=167 Identities=11% Similarity=0.098 Sum_probs=112.4
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhc--------CccchhhhhccCCCHHHHHHHHHHHHHhhcc
Q 014196 115 VIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEA--------GILTKLPKNVDAVDESTRHEFGELLLSLSSL 186 (429)
Q Consensus 115 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~--------G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~ 186 (429)
++|.|+.+|.++|...+|.|..||..++.++. .+.+. -.+|.++...+++++..|..|...+-..-..
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa----~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSA----QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhH----HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 57899999999999999999999999997753 22222 2467777778888888888776654333221
Q ss_pred CCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHH
Q 014196 187 ANTHIPLS-SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGN 264 (429)
Q Consensus 187 ~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~ 264 (429)
.....+. -..++..|..+-.+.++ +++++.|.+|..|-.....+..=.=.++|..++..-.|.+ .+.-+|+.....
T Consensus 205 -~~qal~~~iD~Fle~lFalanD~~~-eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla 282 (885)
T KOG2023|consen 205 -QTQALYVHIDKFLEILFALANDEDP-EVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA 282 (885)
T ss_pred -CcHHHHHHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 1112221 23456677777656665 8999999999988754433322122467777777777775 788889999999
Q ss_pred hhCChhcHHHHhcC-CCChHHHHH
Q 014196 265 LVVTSTGKKAMEDS-PLVPESLIE 287 (429)
Q Consensus 265 La~~~e~~~~i~~~-~~i~~~Lv~ 287 (429)
+|..+..+..+..+ ..++|.|++
T Consensus 283 ~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 283 LAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HhcCcCcHHHHHHHHHHHHHHHHc
Confidence 99877655555432 223345555
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.98 E-value=2.5 Score=44.84 Aligned_cols=181 Identities=16% Similarity=0.125 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc-CC
Q 014196 90 EMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD-AV 168 (429)
Q Consensus 90 ~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~-~~ 168 (429)
...+++.-+++.+-+.....+..+ +..|-++|.+....+|--|+..+..|+... .....+-.. .+.++..|. ..
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~~--~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkter 381 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSRA--VNQLGQFLSHRETNIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTER 381 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHH--HHHHHHHhhcccccchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhcccc
Confidence 334555555665544444555544 677788888877888888888888887764 233444333 555677777 67
Q ss_pred CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-C-CC-C------------hh
Q 014196 169 DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA-V-LD-N------------AR 233 (429)
Q Consensus 169 ~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~-~~-n------------~~ 233 (429)
+.+.|+.++.+|+.+|.. .|...| +.-|++.|.+.+. .+++.-..-..=|+. . .+ + ..
T Consensus 382 DvSirrravDLLY~mcD~-~Nak~I-----V~elLqYL~tAd~-sireeivlKvAILaEKyAtDy~WyVdviLqLiriag 454 (938)
T KOG1077|consen 382 DVSIRRRAVDLLYAMCDV-SNAKQI-----VAELLQYLETADY-SIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG 454 (938)
T ss_pred chHHHHHHHHHHHHHhch-hhHHHH-----HHHHHHHHhhcch-HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 788999999999999844 344444 5678888877665 455543322222221 0 00 0 01
Q ss_pred HHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCCh
Q 014196 234 PMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVP 282 (429)
Q Consensus 234 ~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~ 282 (429)
..++.++-..++.+.-..++++..|+..+...-..+...+.|++.||.+
T Consensus 455 d~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyi 503 (938)
T KOG1077|consen 455 DYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYI 503 (938)
T ss_pred ccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhh
Confidence 2344566666777776667899999999987777777888888877753
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.7 Score=46.63 Aligned_cols=223 Identities=14% Similarity=0.129 Sum_probs=140.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC---------------CCHHHHHHHHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST---------------EVIGRRRAAIKA 137 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s---------------~~~~~~~~A~~a 137 (429)
.++..-+.|++.+..+-..++.-+..+++.+++.-..+.+ .++-||..|+. +||.+|...+..
T Consensus 180 f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrl 257 (866)
T KOG1062|consen 180 FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRL 257 (866)
T ss_pred hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHH
Confidence 3455556677666666677788888899888877666666 57777777752 268999999999
Q ss_pred HHHhccCCCchHHHHHh--------------cC-ccchhhhhcc-----CCCHHHHHHHHHHHHHhhccC-CCccccc--
Q 014196 138 LIQLANGTYTNKAIMVE--------------AG-ILTKLPKNVD-----AVDESTRHEFGELLLSLSSLA-NTHIPLS-- 194 (429)
Q Consensus 138 L~nLa~~~~~nk~~iv~--------------~G-~i~~Lv~lL~-----~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~-- 194 (429)
|.-|..++.+..+.+-+ +| +| |-.++. .++...|..|+.+|..+-.+. .|-..++
T Consensus 258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAI--LYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn 335 (866)
T KOG1062|consen 258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAI--LYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALN 335 (866)
T ss_pred HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHH--HHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence 99998887544444432 11 11 222221 233567778888888665554 3444443
Q ss_pred --------cCCcH----HHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHH
Q 014196 195 --------SSEIL----PFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLAT 261 (429)
Q Consensus 195 --------~~g~i----~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~ 261 (429)
+..++ ..+++.|++.|. .+|+.|+..++.|.. ..|...| +..|++.|...+ +++..++.-
T Consensus 336 ~L~r~V~~d~~avqrHr~tIleCL~DpD~-SIkrralELs~~lvn-~~Nv~~m-----v~eLl~fL~~~d~~~k~~~as~ 408 (866)
T KOG1062|consen 336 MLLRVVQQDPTAVQRHRSTILECLKDPDV-SIKRRALELSYALVN-ESNVRVM-----VKELLEFLESSDEDFKADIASK 408 (866)
T ss_pred hHHhhhcCCcHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHhc-cccHHHH-----HHHHHHHHHhccHHHHHHHHHH
Confidence 12222 245666666776 688889888887764 3455544 456788777655 788888888
Q ss_pred HHHhhC--ChhcHHHHh------c-C-----CCChHHHHHhcccCCChhHHHHHHHHHHH
Q 014196 262 LGNLVV--TSTGKKAME------D-S-----PLVPESLIEILTWEEKPKCQELSAYILMI 307 (429)
Q Consensus 262 L~~La~--~~e~~~~i~------~-~-----~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~ 307 (429)
+..++. .|+.+..|- . + ..++..++.++. ++.+...++++..|+.
T Consensus 409 I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa-~~~~e~~~y~~~rLy~ 467 (866)
T KOG1062|consen 409 IAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIA-NAFQELHEYAVLRLYL 467 (866)
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHh-cCCcchhhHHHHHHHH
Confidence 888886 466655331 1 1 223457788877 4545555555555553
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.4 Score=51.69 Aligned_cols=158 Identities=14% Similarity=0.127 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHH
Q 014196 42 TLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVS 121 (429)
Q Consensus 42 ~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~ 121 (429)
++|++|.+-..++ ......+.+++...+.|.+.|+-.-..|...++..|+- ++. ++..+..
T Consensus 39 AmK~iIa~M~~G~--------------dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avNti~k 99 (757)
T COG5096 39 AMKKIIAQMSLGE--------------DMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVNTIQK 99 (757)
T ss_pred HHHHHHHHHhcCC--------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHHHHHh
Confidence 5677776644333 13455778888888778888888888888888877632 211 2667777
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHH
Q 014196 122 MVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPF 201 (429)
Q Consensus 122 lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~ 201 (429)
=|+++|+.+|..|+.+|..+-.. ..+ ..+++++.+++..+...+|+.|+-++..+=..+ +..+.+.|.+..
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~-----el~--~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~ 170 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK-----ELL--GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDI 170 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH-----HHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHH
Confidence 88889999999988888655322 111 135678888999888999999998888876443 234446788888
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 202 LVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 202 Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
+..++.+.++ .+..+|+.+|..+...
T Consensus 171 l~~l~~D~dP-~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 171 LKELVADSDP-IVIANALASLAEIDPE 196 (757)
T ss_pred HHHHhhCCCc-hHHHHHHHHHHHhchh
Confidence 8888888887 7888898888877644
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.73 Score=49.01 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=93.8
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh---hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHh
Q 014196 201 FLVGILESGSSVETKELCIGALYNLSAVLDNA---RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAME 276 (429)
Q Consensus 201 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~---~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~ 276 (429)
..+..|++.++ .++..|+..+..|+.--.++ ..|...|+| |.+.|.... ++.-..+.+|..++..-...+..-
T Consensus 803 tiL~rLnnksa-~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km~p 879 (1172)
T KOG0213|consen 803 TILWRLNNKSA-KVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTP 879 (1172)
T ss_pred HHHHHhcCCCh-hHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhccccccCC
Confidence 34455667776 78999999988888654444 233444543 566776442 554444444444443222222222
Q ss_pred cCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHH---HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 277 DSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSE---QRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 277 ~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~---~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
-..++.|.|..+|. +...+++++++..+..+|..+++ .|+-|. +-=-|+++|.......++.|...++.+.+
T Consensus 880 Pi~dllPrltPILk-nrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILK-NRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred ChhhhcccchHhhh-hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 22445568999998 78899999999999999986654 343332 34567888888888888888877766664
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.93 Score=46.91 Aligned_cols=253 Identities=17% Similarity=0.108 Sum_probs=122.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH-------
Q 014196 79 KRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI------- 151 (429)
Q Consensus 79 ~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~------- 151 (429)
..|++.-..+..++|+.+..++.++. -..+++ -.|..|-.+|.+.....|-.|+.+|..|+...+ .+..
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P-~kv~vcN~evE 346 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEENV--GSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP-QKVSVCNKEVE 346 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhcc--CHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC-ceeeecChhHH
Confidence 34444456788899999988886552 112222 236778888889988999999999999986542 1111
Q ss_pred -HH-hcC-cc--chhhhhccCCCHHHHHHHHHHHHHhhccC-CC-cccccc-------------CCcHHHHHHhhhc-CC
Q 014196 152 -MV-EAG-IL--TKLPKNVDAVDESTRHEFGELLLSLSSLA-NT-HIPLSS-------------SEILPFLVGILES-GS 210 (429)
Q Consensus 152 -iv-~~G-~i--~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~-~~~i~~-------------~g~i~~Lv~lL~~-~~ 210 (429)
++ +.+ -| -.+..+|..+..+........+-++-.+- ++ +..+.+ ...+..|...|.+ |.
T Consensus 347 sLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg 426 (898)
T COG5240 347 SLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGG 426 (898)
T ss_pred HHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhccc
Confidence 11 111 01 12234454444333333222222221110 11 111110 0122333333322 22
Q ss_pred cHHHHHHHHHHHHHhcc-CCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhC-ChhcHHHHhcCCC-ChHHHH-
Q 014196 211 SVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVV-TSTGKKAMEDSPL-VPESLI- 286 (429)
Q Consensus 211 ~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~-~~e~~~~i~~~~~-i~~~Lv- 286 (429)
- +-|+.+..++...-. .++.++++ +..|.+.+.|+ +.-+-++.+|..|-. .|... .++ .+..+.
T Consensus 427 ~-eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc-ey~~I~vrIL~iLG~EgP~a~-----~P~~yvrhIyN 494 (898)
T COG5240 427 L-EFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC-EYHQITVRILGILGREGPRAK-----TPGKYVRHIYN 494 (898)
T ss_pred c-hHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc-chhHHHHHHHHHhcccCCCCC-----CcchHHHHHHH
Confidence 2 445555555554433 22333332 22344444444 222333333333322 11100 011 000111
Q ss_pred HhcccCCChhHHHHHHHHHHHHhhC--CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 287 EILTWEEKPKCQELSAYILMILAHQ--SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 287 ~~L~~~~s~~~~e~A~~~L~~L~~~--~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
.++ -.+...+..|+.+|...+-. ++-. ..-+...|-.++.+.++.++++|..+|+.++..+
T Consensus 495 R~i--LEN~ivRsaAv~aLskf~ln~~d~~~-----~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 495 RLI--LENNIVRSAAVQALSKFALNISDVVS-----PQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred HHH--HhhhHHHHHHHHHHHHhccCcccccc-----HHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 111 13445677777777554432 2211 2224567778888899999999999999999644
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.038 Score=44.15 Aligned_cols=68 Identities=25% Similarity=0.359 Sum_probs=53.9
Q ss_pred CcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh--cCcHHHHHHhccCCcchHHHHHHHHHHhhC
Q 014196 197 EILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS--NGVVHTLLKLCSMKERLSEKSLATLGNLVV 267 (429)
Q Consensus 197 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~--~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~ 267 (429)
..+|+++..+.+.+. .++..|+.+|+|++..... .++. ..++..|..++.|+++-++.++..|-+|-+
T Consensus 27 ~Il~pVL~~~~D~d~-rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDS-RVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 458899999988887 8999999999999975433 3332 478888999999988777888888877643
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.18 Score=45.53 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhccCCCChhHHHhc----------------CcHHHHHHhccC---C----cchHHHHHHHHHHhhCChh
Q 014196 214 TKELCIGALYNLSAVLDNARPMVSN----------------GVVHTLLKLCSM---K----ERLSEKSLATLGNLVVTST 270 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~n~~~iv~~----------------G~v~~Lv~lL~~---~----~~~~~~a~~~L~~La~~~e 270 (429)
....++..|.||+..++.+..+++. ..+..|++++.. . ..-....+.+|.|++..++
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~ 90 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE 90 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence 4456788888998887777655443 356667776654 1 2567788999999999999
Q ss_pred cHHHHhcCCCC---hHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhC---CchHHHHHHhh
Q 014196 271 GKKAMEDSPLV---PESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKS---GIVHVSLQLAL 333 (429)
Q Consensus 271 ~~~~i~~~~~i---~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~---G~v~~L~~ll~ 333 (429)
||+.+.+.... +..|+..+. +.+..-+.-+++++.|.| ++.+....+... +++|.|+.-+-
T Consensus 91 gR~~~l~~~~~~~~l~kLl~ft~-~~s~iRR~Gva~~IrNcc-Fd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 91 GRQFFLDPQRYDGPLQKLLPFTE-HKSVIRRGGVAGTIRNCC-FDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHhCchhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHhh-ccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999865422 235666666 567777888899999965 555555566653 57777766555
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.3 Score=41.65 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=122.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHH-------hhcCCC-----HHHHHHHHHHHHHhcc
Q 014196 77 SVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVS-------MVSTEV-----IGRRRAAIKALIQLAN 143 (429)
Q Consensus 77 lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~-------lL~s~~-----~~~~~~A~~aL~nLa~ 143 (429)
+|..|.. ++.+..|+.+|..--...++..-.+-. -|.+..|++ .|..+. ..-..+|+..|..+|.
T Consensus 2 ~i~~L~~--~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs 79 (262)
T PF04078_consen 2 LILDLCN--PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS 79 (262)
T ss_dssp HHHHTSS--HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhcC--cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 3444543 677888887777655444555555554 577766654 333322 2334567777888899
Q ss_pred CCCchHHHHHhcCccchhhhhccCCC-----HHHHHHHHHHHHHhhccCCCcccc---ccCCcHHHHHHhhhcCCcHHHH
Q 014196 144 GTYTNKAIMVEAGILTKLPKNVDAVD-----ESTRHEFGELLLSLSSLANTHIPL---SSSEILPFLVGILESGSSVETK 215 (429)
Q Consensus 144 ~~~~nk~~iv~~G~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i---~~~g~i~~Lv~lL~~~~~~~~~ 215 (429)
|+ +.|....++...-.|...|+..+ ...|-...+++..|...++ ...| -..+.+|..++.++.|+. -.|
T Consensus 80 hp-etr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~-~evi~fLl~tEiiplcLr~me~Gse-lSK 156 (262)
T PF04078_consen 80 HP-ETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDD-PEVISFLLQTEIIPLCLRIMEFGSE-LSK 156 (262)
T ss_dssp -T-TTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT---HHHHHHHHCTTHHHHHHHHHHHS-H-HHH
T ss_pred Ch-HHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCc-HHHHHHHHhhchHHHHHHHHHhccH-HHH
Confidence 87 58999999998777777776443 2234455677777775432 2233 378999999999999986 567
Q ss_pred HHHHHHHHHhccCCCChhHHHhc-Cc-------HHHHHHhc-cCCc-chHHHHHHHHHHhhCChhcHHHHhc
Q 014196 216 ELCIGALYNLSAVLDNARPMVSN-GV-------VHTLLKLC-SMKE-RLSEKSLATLGNLVVTSTGKKAMED 277 (429)
Q Consensus 216 ~~A~~aL~nLs~~~~n~~~iv~~-G~-------v~~Lv~lL-~~~~-~~~~~a~~~L~~La~~~e~~~~i~~ 277 (429)
.-|.-.+..+-.++.....+... +- +..++.-+ .+++ .+.+..+.+-..|+.++..|.++.+
T Consensus 157 tvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 157 TVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777776665544444332 22 23333322 2444 7888888888899999988888875
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.92 Score=48.29 Aligned_cols=257 Identities=15% Similarity=0.129 Sum_probs=145.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch--HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV--KIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~--~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+...+..|.+.++.++.+|+..+..++.--. .--+.+..+|.| |..-|...++++.-..+.||..+.....-.|.
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 45566788888899999999999998875211 112356667754 67788888898876666666555422111111
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccC---CcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSS---EILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
.==-.|.+|.|..+|.+....+++++..++..++....- .+... -.--.|+.+|.+... +++++|..++..++.
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE--~v~aREWMRIcfeLlelLkahkK-~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPE--YVSAREWMRICFELLELLKAHKK-EIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHHHH
Confidence 111247899999999888888899999999998854322 22211 122357888888776 789999999988875
Q ss_pred CCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCCh---HHHHHhcccCCChhHHHHHHHH
Q 014196 228 VLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVP---ESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 228 ~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~---~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
.-. -.+++..|+.-|+.. +-+.+.+.+++ ...+.+..|-. |+|+.=-+ .....+|.-.+.+
T Consensus 955 aIG------PqdVLatLlnnLkvq-eRq~RvcTtva--------IaIVaE~c~pFtVLPalmneYr-tPe~nVQnGVLka 1018 (1172)
T KOG0213|consen 955 AIG------PQDVLATLLNNLKVQ-ERQNRVCTTVA--------IAIVAETCGPFTVLPALMNEYR-TPEANVQNGVLKA 1018 (1172)
T ss_pred hcC------HHHHHHHHHhcchHH-HHHhchhhhhh--------hhhhhhhcCchhhhHHHHhhcc-CchhHHHHhHHHH
Confidence 311 122333333333322 11112222221 11112222222 23333222 3444555544444
Q ss_pred HHHHhhCC-HHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 305 LMILAHQS-SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 305 L~~L~~~~-~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
|..+...- +....-+- -+.|.|-+.+-+.+...++-|+.+++.+.=
T Consensus 1019 lsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 44333221 11122222 245666677777788888888888887774
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.19 Score=53.31 Aligned_cols=70 Identities=20% Similarity=0.138 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
....+.+.++..++.+++.|+..+..+-.. +.+...+.|.++.|-+++.+.++.+..+|+.+|..+...+
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 456788888888999999988888887654 3567788999999999999999999999999999997665
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.45 Score=49.90 Aligned_cols=180 Identities=16% Similarity=0.141 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc------hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED------VKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~------~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
......++.+...+..++..|+..+.-+++.. ..+...+.+ .+...+..++.+.+..++..|+.+|+.+-.-+
T Consensus 234 ~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS 312 (823)
T KOG2259|consen 234 ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS 312 (823)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhH
Confidence 35678888888877888888876666554322 112222222 23566677777666566666666555432111
Q ss_pred C--------------------------------------------------chHHHHHhcCccchhhhhccCCCHHHHHH
Q 014196 146 Y--------------------------------------------------TNKAIMVEAGILTKLPKNVDAVDESTRHE 175 (429)
Q Consensus 146 ~--------------------------------------------------~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~ 175 (429)
+ +...-|+..|+-..++.=++.--.++|+.
T Consensus 313 ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~A 392 (823)
T KOG2259|consen 313 EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRA 392 (823)
T ss_pred HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHH
Confidence 0 11222334444444555554333678888
Q ss_pred HHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-ch
Q 014196 176 FGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RL 254 (429)
Q Consensus 176 aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~ 254 (429)
|+..++.|+. +++.++ ..++..|+.++.+... .++..|..+|..++.+-. +...-++.+++.|.|.. ++
T Consensus 393 AV~Sl~~La~---ssP~FA-~~aldfLvDMfNDE~~-~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dv 462 (823)
T KOG2259|consen 393 AVASLCSLAT---SSPGFA-VRALDFLVDMFNDEIE-VVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDV 462 (823)
T ss_pred HHHHHHHHHc---CCCCcH-HHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHH
Confidence 8888999884 334443 2368899999988776 789999999999887632 23344566666666554 44
Q ss_pred HHHHHHHH
Q 014196 255 SEKSLATL 262 (429)
Q Consensus 255 ~~~a~~~L 262 (429)
++..-..|
T Consensus 463 Re~l~elL 470 (823)
T KOG2259|consen 463 REALRELL 470 (823)
T ss_pred HHHHHHHH
Confidence 44333333
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.2 Score=41.49 Aligned_cols=177 Identities=15% Similarity=0.144 Sum_probs=111.6
Q ss_pred HHHHHHHHHhhccCCCccccccCCcHHHHHHhhhc----CCcHHHHHHHHHHHHHhccCCCC--hhHHHhcCcHHHHHHh
Q 014196 174 HEFGELLLSLSSLANTHIPLSSSEILPFLVGILES----GSSVETKELCIGALYNLSAVLDN--ARPMVSNGVVHTLLKL 247 (429)
Q Consensus 174 ~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~~A~~aL~nLs~~~~n--~~~iv~~G~v~~Lv~l 247 (429)
-++..+|-.++++++.+..+..+-.--.|..+|.. ...+-++-.+++++..|...++. ...+...++||..+..
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 34556667778888888877765544455555543 33345788899999999986543 3667889999999999
Q ss_pred ccCCc-chHHHHHHHHHHhhCChhcHHHHhcC-------CCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHH
Q 014196 248 CSMKE-RLSEKSLATLGNLVVTSTGKKAMEDS-------PLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKM 319 (429)
Q Consensus 248 L~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~-------~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i 319 (429)
+..++ ..+.-|..++..+-.++.|-..+... +-+...+|..+...+++..-.+.+.+..+|+.. +..|..+
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn-prar~aL 255 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN-PRARAAL 255 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence 98765 44455666777776777766555432 111112233333268888899999999999864 6666665
Q ss_pred HhC---CchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 320 AKS---GIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 320 ~~~---G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
... +.-..-...+...++..|+.-..++.++.
T Consensus 256 ~~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l~ 290 (293)
T KOG3036|consen 256 RSCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNLC 290 (293)
T ss_pred HhhCcchhccchHHHHHhcChhHHHHHHHHHHHhc
Confidence 542 22222222333345555655555666554
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.77 E-value=2.4 Score=46.41 Aligned_cols=263 Identities=14% Similarity=0.091 Sum_probs=140.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch-HHHHHh
Q 014196 76 KSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN-KAIMVE 154 (429)
Q Consensus 76 ~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n-k~~iv~ 154 (429)
.+++...+.|.+.+.-|...|..-...+..+-+.=-+...+..|+++|++.+.++|..|+.+|+-|+..-.+. -+.+++
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve 88 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE 88 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 6788888888888888877776433222111111112346888999999999999999999999998543222 223333
Q ss_pred cCccchhhhhccCCCHHHHHHHHHHHH-HhhccCCCccccccCCcHHHHHHhhhc-----CCcHHHHHHHHHHHHHhc-c
Q 014196 155 AGILTKLPKNVDAVDESTRHEFGELLL-SLSSLANTHIPLSSSEILPFLVGILES-----GSSVETKELCIGALYNLS-A 227 (429)
Q Consensus 155 ~G~i~~Lv~lL~~~~~~~~~~aa~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~~A~~aL~nLs-~ 227 (429)
.|..-+-++....+...+-.|. .++..+............+.+...+.. ++...++-.++..+...- .
T Consensus 89 -----~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 89 -----NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred -----HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 1222222333333333332222 223222111111123344444444433 222235656666555432 2
Q ss_pred CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC--hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 228 VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT--STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 228 ~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~--~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
...-... ...+....++.-+..+. .++++++.+|+.|+.. .+.-..+. ..|++-|....++....--+.+
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li------~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELI------EHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHH------HHHHhccCCCCchHHHHHHHHH
Confidence 2221111 23344555555555543 8899999999988762 22222222 2566656533444445556677
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHh---hcCCHHHHHHHHHHHHHHH
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLA---LLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll---~~~~~~~k~~A~~lL~~l~ 351 (429)
|..+|..+ ..|-----..++|.+..-. ....++.++.....+..|-
T Consensus 237 l~~i~r~a-g~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 237 LAAICRQA-GHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred HHHHHHHh-cchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 77887632 1221111234778888877 5567788888877766554
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.73 Score=49.78 Aligned_cols=138 Identities=15% Similarity=0.085 Sum_probs=101.2
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHH
Q 014196 29 RQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKK 108 (429)
Q Consensus 29 ~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~ 108 (429)
+-.+.... +-|.-+|+|+.-+-... +...| +...-.+..+.+.|+++|+..|..|+..+..+- .++.-.
T Consensus 58 ~dViK~~~-trd~ElKrL~ylYl~~y-----ak~~P---~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~ 126 (757)
T COG5096 58 PDVIKNVA-TRDVELKRLLYLYLERY-----AKLKP---ELALLAVNTIQKDLQDPNEEIRGFALRTLSLLR--VKELLG 126 (757)
T ss_pred HHHHHHHH-hcCHHHHHHHHHHHHHH-----hccCH---HHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHH
Confidence 33334433 78899999999887765 11111 334556788889999999999987777776553 122222
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhc
Q 014196 109 LMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSS 185 (429)
Q Consensus 109 ~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~ 185 (429)
.+++++.+++.++++.+|..|+-++.++=.-+ +....+.|.+..+..++...++.+..+|..+|..+..
T Consensus 127 -----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 127 -----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred -----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 24889999999999999999999999986543 5677788999888888988888888888877777763
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.78 Score=50.56 Aligned_cols=156 Identities=17% Similarity=0.135 Sum_probs=116.6
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHH-H-hccCCCChhHHHhcCcHHHHHHhccCC---c-chHHHHHHHHHHhhC-
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALY-N-LSAVLDNARPMVSNGVVHTLLKLCSMK---E-RLSEKSLATLGNLVV- 267 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~-n-Ls~~~~n~~~iv~~G~v~~Lv~lL~~~---~-~~~~~a~~~L~~La~- 267 (429)
.-|+.|..++||++... ++|- .+--++ . |+.++.-...++..++-.-.+..|.+. + +.+..|+.+|..++.
T Consensus 510 sVGIFPYVLKLLQS~a~-ELrp-iLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 510 SVGIFPYVLKLLQSSAR-ELRP-ILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred ccchHHHHHHHhccchH-hhhh-hHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 67999999999999876 6665 444444 2 455554456677776666666667662 2 566777888888887
Q ss_pred ChhcHHHHhcCCCChHHHHHhcccCC-ChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHH
Q 014196 268 TSTGKKAMEDSPLVPESLIEILTWEE-KPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKL 346 (429)
Q Consensus 268 ~~e~~~~i~~~~~i~~~Lv~~L~~~~-s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~l 346 (429)
.+-|+++..+ ++++..-.+.|+ ++ .+-.+..++-+|..|-..-++.|=.=++.++...|..++.+..++++..|...
T Consensus 588 f~lGQ~acl~-~~li~iCle~ln-d~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA 665 (1387)
T KOG1517|consen 588 FKLGQKACLN-GNLIGICLEHLN-DDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA 665 (1387)
T ss_pred cchhHHHhcc-ccHHHHHHHHhc-CCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence 5888888888 444446667776 43 46778888888988887656666666778999999999999999999999998
Q ss_pred HHHHHhcc
Q 014196 347 LQWFKDER 354 (429)
Q Consensus 347 L~~l~~~~ 354 (429)
|+-|-+..
T Consensus 666 Lgtfl~~~ 673 (1387)
T KOG1517|consen 666 LGTFLSNG 673 (1387)
T ss_pred HHHHhccc
Confidence 88877644
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.7 Score=45.61 Aligned_cols=134 Identities=22% Similarity=0.213 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
......++..-+ ++...|.-|+..|....++-|+..... |..++++.+++|..+|..|+..|-.++.++.+.-.
T Consensus 22 ~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 22 EEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 344555555544 578899999999999999888876654 77899999999999999999999999998654555
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhh---cCCcHHHHHHHHHHHH
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILE---SGSSVETKELCIGALY 223 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~~~~~A~~aL~ 223 (429)
.|++ .|+++|++.+......+-.+|..|-..+. .+.+..|..-+. +++. .+++.++.-|.
T Consensus 96 kvaD-----vL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de-~~Re~~lkFl~ 158 (556)
T PF05918_consen 96 KVAD-----VLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDE-QVRERALKFLR 158 (556)
T ss_dssp HHHH-----HHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-H-HHHHHHHHHHH
T ss_pred HHHH-----HHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCch-HHHHHHHHHHH
Confidence 5543 47888986664433333334544442221 122333444333 4444 56777666554
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.41 E-value=2.7 Score=44.00 Aligned_cols=255 Identities=15% Similarity=0.076 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch--HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV--KIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~--~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
.-.+...++.|.+..+.++..|+.....+++-=. .--..+..+|.| |..-|...++++.-..+.|+..+-.... .
T Consensus 603 ~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~-~ 679 (975)
T COG5181 603 SMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHR-F 679 (975)
T ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhc-c
Confidence 3457788899999999999999988887774211 112445566654 5667777888888777777766643321 1
Q ss_pred H-HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccC---CcHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 014196 149 K-AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSS---EILPFLVGILESGSSVETKELCIGALYN 224 (429)
Q Consensus 149 k-~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 224 (429)
+ ..=--.|.+|.|..+|++....+..+....+..++.+... .++-. ..--.|+.+|.+-+. +++++|..++..
T Consensus 680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe--yi~~rEWMRIcfeLvd~Lks~nK-eiRR~A~~tfG~ 756 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE--YIGVREWMRICFELVDSLKSWNK-EIRRNATETFGC 756 (975)
T ss_pred cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc--cCCHHHHHHHHHHHHHHHHHhhH-HHHHhhhhhhhh
Confidence 1 1001258899999999887777777777788888855432 22211 122357888888776 799999888887
Q ss_pred hccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCCh---HHHHHhcccCCChhHHHHH
Q 014196 225 LSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVP---ESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 225 Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~---~~Lv~~L~~~~s~~~~e~A 301 (429)
++..- --.+++..|+.-|+. +++-..+...++ ...+.+..|-. |+|+.=-. .....+|.
T Consensus 757 Is~ai------GPqdvL~~LlnnLkv----qeRq~Rvctsva-----I~iVae~cgpfsVlP~lm~dY~-TPe~nVQn-- 818 (975)
T COG5181 757 ISRAI------GPQDVLDILLNNLKV----QERQQRVCTSVA-----ISIVAEYCGPFSVLPTLMSDYE-TPEANVQN-- 818 (975)
T ss_pred HHhhc------CHHHHHHHHHhcchH----HHHHhhhhhhhh-----hhhhHhhcCchhhHHHHHhccc-CchhHHHH--
Confidence 77421 112233334443332 222221111111 11122222322 23332222 23444554
Q ss_pred HHHHHHHhhCCH----HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 302 AYILMILAHQSS----EQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 302 ~~~L~~L~~~~~----~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
++|-.+|..-+ ..+.-+- -+.|.|-+.+.+.++..++-|..+++.+.=
T Consensus 819 -GvLkam~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 819 -GVLKAMCFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 44555554211 1122222 245666667777788888888888887763
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=4.3 Score=37.83 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC-----HHHHHHHHHHHHHhhccCCCc--cccccCCcHHH
Q 014196 129 GRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD-----ESTRHEFGELLLSLSSLANTH--IPLSSSEILPF 201 (429)
Q Consensus 129 ~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~--~~i~~~g~i~~ 201 (429)
.-.-+|+..|..++.|. +.|...+++-.--.|-..|...+ .-.|-.+.+.+..|...++.- ..+...++||.
T Consensus 94 nRVcnaL~LlQcvASHp-dTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHP-DTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcCc-chHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 44567788888888887 58888888765434444554322 345666777888888665422 22337899999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhc-CcHHHHHHhc--------cCCc-chHHHHHHHHHHhhCChhc
Q 014196 202 LVGILESGSSVETKELCIGALYNLSAVLDNARPMVSN-GVVHTLLKLC--------SMKE-RLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 202 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~-G~v~~Lv~lL--------~~~~-~~~~~a~~~L~~La~~~e~ 271 (429)
.++.+..|+. ..|.-|.-.+..+-.++.....+... +-+..+..+| +.++ .+.+.++.+..+|+.++..
T Consensus 173 CLrime~GSe-lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 173 CLRIMESGSE-LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHHHHhcccH-HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 9999999997 57777777777777777666555442 4444333333 2334 7788888888999999988
Q ss_pred HHHHhc
Q 014196 272 KKAMED 277 (429)
Q Consensus 272 ~~~i~~ 277 (429)
|.+...
T Consensus 252 r~aL~~ 257 (293)
T KOG3036|consen 252 RAALRS 257 (293)
T ss_pred HHHHHh
Confidence 887765
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.057 Score=33.22 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=25.9
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 014196 115 VIQMLVSMVSTEVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 115 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~ 144 (429)
.+|.+++++.++++++|..|+.+|..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999998753
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.28 E-value=3.6 Score=42.74 Aligned_cols=264 Identities=14% Similarity=0.067 Sum_probs=145.7
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHhh-hchHHHHHHHhcCcHH-HHH-HhhcC-CCHHHHHHHHHHHHH-hcc-----
Q 014196 75 QKSVKRLHFG-SWEEKEMAAKEIEKLAK-EDVKIKKLMAELGVIQ-MLV-SMVST-EVIGRRRAAIKALIQ-LAN----- 143 (429)
Q Consensus 75 ~~lv~~L~~~-~~~~~~~Aa~~L~~La~-~~~~~r~~i~~~G~i~-~Lv-~lL~s-~~~~~~~~A~~aL~n-La~----- 143 (429)
..+|.....+ ....+.+++..+...+. .+| ...+...++|- .+| .-++. ++..++-+|+.+|.+ |-+
T Consensus 136 ~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf 213 (858)
T COG5215 136 EEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNF 213 (858)
T ss_pred HHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555544 34677888888888774 344 23333444332 222 23333 467889999999988 321
Q ss_pred CCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHH
Q 014196 144 GTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGAL 222 (429)
Q Consensus 144 ~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 222 (429)
..|.++..+.+. ....-+..+.+.+..+...|..+-... +.-..+.+.-....+.+.+++.+. ++...|..--
T Consensus 214 ~~E~erNy~mqv-----vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd-~va~qavEfW 287 (858)
T COG5215 214 CYEEERNYFMQV-----VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQND-EVAIQAVEFW 287 (858)
T ss_pred cchhhhchhhee-----eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-HHHHHHHHHH
Confidence 112233333321 233345556666666666666554322 211122232223344455566655 5555555433
Q ss_pred HHhccCC---------------CCh--hHHHhcCcHHHHHHhccC----C---c-chHHHHHHHHHHhhCChhcHHHHhc
Q 014196 223 YNLSAVL---------------DNA--RPMVSNGVVHTLLKLCSM----K---E-RLSEKSLATLGNLVVTSTGKKAMED 277 (429)
Q Consensus 223 ~nLs~~~---------------~n~--~~iv~~G~v~~Lv~lL~~----~---~-~~~~~a~~~L~~La~~~e~~~~i~~ 277 (429)
.-+|... .|. .+..-++++|.|+.||.. . + .....|.++|.-.+... ...|++
T Consensus 288 sticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--gd~i~~ 365 (858)
T COG5215 288 STICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--GDKIMR 365 (858)
T ss_pred HHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--hhHhHH
Confidence 3333221 111 222235689999999963 1 2 34444555554333211 123333
Q ss_pred CCCChHHHHH-hcccCCChhHHHHHHHHHHHHhhCCH-HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 278 SPLVPESLIE-ILTWEEKPKCQELSAYILMILAHQSS-EQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 278 ~~~i~~~Lv~-~L~~~~s~~~~e~A~~~L~~L~~~~~-~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
+ +. ..|+ -++ +.+-..+|.|+.+++.+.++.. ..+..++ ..++|.+...+.+..--+|..++|.++.+.++
T Consensus 366 -p-Vl-~FvEqni~-~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 366 -P-VL-GFVEQNIR-SESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred -H-HH-HHHHHhcc-CchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 1 22 2332 344 5777889999999999988643 3444444 45689998888877778999999999999883
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.16 Score=38.12 Aligned_cols=65 Identities=11% Similarity=0.186 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc--chHHHHHHHHHHhhCChhcHHHHhcCC
Q 014196 215 KELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE--RLSEKSLATLGNLVVTSTGKKAMEDSP 279 (429)
Q Consensus 215 ~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~--~~~~~a~~~L~~La~~~e~~~~i~~~~ 279 (429)
.+.|++|+.+++..+.....+-+.++|+.++++....+ .++--|..+|.-++.+.+|.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 35699999999998888887878899999999988765 788888999999999999998887654
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.15 Score=46.09 Aligned_cols=122 Identities=16% Similarity=0.035 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHhccCCCchHHHHHhc----------------CccchhhhhccCC------CHHHHHHHHHHHHHhh
Q 014196 127 VIGRRRAAIKALIQLANGTYTNKAIMVEA----------------GILTKLPKNVDAV------DESTRHEFGELLLSLS 184 (429)
Q Consensus 127 ~~~~~~~A~~aL~nLa~~~~~nk~~iv~~----------------G~i~~Lv~lL~~~------~~~~~~~aa~~L~~Ls 184 (429)
+......++..|.||+..+ .....+.+. .++..|+.++..+ ....-...|.+|.|+|
T Consensus 8 ~~~~adl~~MLLsNlT~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSD-SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CcchHHHHHHHHHHhccch-HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3345566778888888876 344434321 2456666666441 1334556788999999
Q ss_pred ccCCCcccccc--CCc--HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh---cCcHHHHHHhccC
Q 014196 185 SLANTHIPLSS--SEI--LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS---NGVVHTLLKLCSM 250 (429)
Q Consensus 185 ~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~---~G~v~~Lv~lL~~ 250 (429)
.....|..+.+ .+. +..|+.++.+.+. .-+.-++.+|.|+|...+....+.. .+++|.|+--|..
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~-iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSV-IRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcH-HHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence 99888887763 334 6777777777754 4466788999999998888877766 3566666655543
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.98 E-value=2.4 Score=44.01 Aligned_cols=250 Identities=11% Similarity=0.127 Sum_probs=145.9
Q ss_pred CHHHHHHHHHHHHHHh---h---hchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCcc
Q 014196 85 SWEEKEMAAKEIEKLA---K---EDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGIL 158 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La---~---~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i 158 (429)
+..++..|+.+|..-. + ..++.|..+ ....+..-+.+|.++|.+|..+|..+..-....-+.+.+.-..
T Consensus 191 ~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~ 265 (858)
T COG5215 191 TSAVRLAALKALMDSLMFVQGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALA 265 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666665411 1 112233332 3344566677889999999999988765433333344444333
Q ss_pred chhhhhccCCCHHHHHHHHHHHHHhhccC-C------Cccc-------cc---cCCcHHHHHHhhhcC------CcHHHH
Q 014196 159 TKLPKNVDAVDESTRHEFGELLLSLSSLA-N------THIP-------LS---SSEILPFLVGILESG------SSVETK 215 (429)
Q Consensus 159 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~------~~~~-------i~---~~g~i~~Lv~lL~~~------~~~~~~ 215 (429)
......+.+...++...+...-..++... + .-+. ++ -.+.+|.|+++|... +.....
T Consensus 266 alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~s 345 (858)
T COG5215 266 ALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPS 345 (858)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchh
Confidence 33445556666665555544332443221 0 0000 01 245789999999762 222344
Q ss_pred HHHHHHHHHhccCCCChhHHHhcCcHHHHHHhc----cCCc-chHHHHHHHHHHhhC--ChhcHHHHhcCCCChHHHHHh
Q 014196 216 ELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC----SMKE-RLSEKSLATLGNLVV--TSTGKKAMEDSPLVPESLIEI 288 (429)
Q Consensus 216 ~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL----~~~~-~~~~~a~~~L~~La~--~~e~~~~i~~~~~i~~~Lv~~ 288 (429)
..|..+|.-.+....++ .+.+++... ..++ .-++.++.+++.+-. +.+.+..++. ..+| .+...
T Consensus 346 maA~sCLqlfaq~~gd~-------i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~-qalp-~i~n~ 416 (858)
T COG5215 346 MAASSCLQLFAQLKGDK-------IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVP-QALP-GIENE 416 (858)
T ss_pred hhHHHHHHHHHHHhhhH-------hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHH-hhhH-HHHHh
Confidence 55556665444322222 233444443 3344 677888888887766 4566777776 4554 78877
Q ss_pred cccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC---CHHHHHHHHHHHHHHHh
Q 014196 289 LTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG---SPLAQRRASKLLQWFKD 352 (429)
Q Consensus 289 L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~---~~~~k~~A~~lL~~l~~ 352 (429)
+. +..-.+++.++++++.++.+ +...+--.|-++..+.-+..| .+..-.+.+|...+|.+
T Consensus 417 m~-D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~ 479 (858)
T COG5215 417 MS-DSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVD 479 (858)
T ss_pred cc-cceeehhhHHHHHHHHHHHH---HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHH
Confidence 77 67888899999999998753 333344467677776655544 56777788887777776
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=93.81 E-value=1 Score=39.26 Aligned_cols=118 Identities=10% Similarity=0.056 Sum_probs=85.6
Q ss_pred hHHHhcCcHHHHHHhccCCc-------chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCC-ChhHHHHHHHH
Q 014196 233 RPMVSNGVVHTLLKLCSMKE-------RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEE-KPKCQELSAYI 304 (429)
Q Consensus 233 ~~iv~~G~v~~Lv~lL~~~~-------~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~-s~~~~e~A~~~ 304 (429)
..++..||+..|+.++.+.. .....++.++.+|-.+.-.........- +..++.+++... +....+.|..+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~F-I~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSF-IKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHH-HHHHHHHHccccccchHHHHHHHH
Confidence 45677889999999987642 4455566666676665332333333222 235666665222 46788899999
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
|-++...++...+.+.++=-++.|+..++..++..+.+|..++-.|-
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99999988888888888888999999999999999999998765554
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.51 Score=44.50 Aligned_cols=96 Identities=15% Similarity=0.127 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc
Q 014196 88 EKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD 166 (429)
Q Consensus 88 ~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~ 166 (429)
....|+..|.-++--+|..|..+.+..++..|+++|.. .++.++.+++.+|..+-.++..|....-+.+|+..++.++.
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567888888888788999999999999999999954 57899999999999998888788888888999999999997
Q ss_pred CCC--HHHHHHHHHHHHHh
Q 014196 167 AVD--ESTRHEFGELLLSL 183 (429)
Q Consensus 167 ~~~--~~~~~~aa~~L~~L 183 (429)
..+ .+++-.+...|+-.
T Consensus 187 ~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred cccccHHHhHHHHHHHHHH
Confidence 654 56666677654433
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=93.71 E-value=8.1 Score=42.56 Aligned_cols=179 Identities=18% Similarity=0.152 Sum_probs=98.7
Q ss_pred HHHHhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc----CCC----HHHHH
Q 014196 108 KLMAELGVIQMLVSMVSTE-----VIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD----AVD----ESTRH 174 (429)
Q Consensus 108 ~~i~~~G~i~~Lv~lL~s~-----~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~----~~~----~~~~~ 174 (429)
..+.++|++..|+++|.+- +.+.....+..|..++.-. .||+.+.+.|+++.|+..+. ... .+.-+
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 4566799999999999762 3445556677777777775 79999999999999988774 222 23333
Q ss_pred HHHHHHHHhhccC---CCccccc----------cCCcHHHHHHhhhcC---CcHHHHHHHHHHHHHhccCCCChhH-HHh
Q 014196 175 EFGELLLSLSSLA---NTHIPLS----------SSEILPFLVGILESG---SSVETKELCIGALYNLSAVLDNARP-MVS 237 (429)
Q Consensus 175 ~aa~~L~~Ls~~~---~~~~~i~----------~~g~i~~Lv~lL~~~---~~~~~~~~A~~aL~nLs~~~~n~~~-iv~ 237 (429)
....++..|.... +...... +..-+..|++.+.+. +...+....++.|-+|+...+.... +++
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 3333333332211 1111111 111256666666553 2236777788899999987666533 332
Q ss_pred cCcHHHHHHhcc-CCc--chHHHHHHHHHHhhC----C---hhcHHHHhcCCCChHHHHHhcc
Q 014196 238 NGVVHTLLKLCS-MKE--RLSEKSLATLGNLVV----T---STGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 238 ~G~v~~Lv~lL~-~~~--~~~~~a~~~L~~La~----~---~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
-|.+.+++=. |.+ .--...+..+..++. + ...|..|.+.| ++...+++|.
T Consensus 270 --~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~G-Iv~~a~~YL~ 329 (802)
T PF13764_consen 270 --HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESG-IVQDAIDYLL 329 (802)
T ss_pred --HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhh-HHHHHHHHHH
Confidence 2333333211 111 111222334444433 2 23467777754 4456777775
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.2 Score=45.18 Aligned_cols=128 Identities=14% Similarity=0.217 Sum_probs=89.5
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCCC---chHHHHHhcCccchhhhhccCCC-----HH--HHHHHHHHHHHhhccCCC
Q 014196 120 VSMVSTEVIGRRRAAIKALIQLANGTY---TNKAIMVEAGILTKLPKNVDAVD-----ES--TRHEFGELLLSLSSLANT 189 (429)
Q Consensus 120 v~lL~s~~~~~~~~A~~aL~nLa~~~~---~nk~~iv~~G~i~~Lv~lL~~~~-----~~--~~~~aa~~L~~Ls~~~~~ 189 (429)
..+++..+.+-|-+|+.....+..+++ .||..+.++=+++.+-+++.+.+ ++ .+..+..+|.-+|..++.
T Consensus 17 ~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pEl 96 (698)
T KOG2611|consen 17 LKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPEL 96 (698)
T ss_pred HHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhh
Confidence 344444455556666666666766653 36888999989999988887543 22 244455567667765532
Q ss_pred --ccccccCCcHHHHHHhhhcCCcHH------HHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc
Q 014196 190 --HIPLSSSEILPFLVGILESGSSVE------TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 190 --~~~i~~~g~i~~Lv~lL~~~~~~~------~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~ 249 (429)
...+. ..||.|..++..+...+ +..++-.+|+.++.++.....++..|+++.+.+.-.
T Consensus 97 Ash~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 97 ASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred ccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 22222 46999999998753323 677899999999999989999999999999987644
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.60 E-value=2.4 Score=46.54 Aligned_cols=138 Identities=20% Similarity=0.156 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc-hH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT-NK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~-nk 149 (429)
+..++.++++|+. ...+..|++++..++...-..-..-+-..+++.|++.|.......+...+.++..|..+-.. ..
T Consensus 610 ~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~ 687 (1233)
T KOG1824|consen 610 PRTLPILLERLGN--EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIP 687 (1233)
T ss_pred HHHHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3456777777765 56777888888888753221110111123578888888876666677777777666543211 12
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCc
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSS 211 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 211 (429)
...+++ ++.-+..++...+...-+.+...|..+.........-...-.++.++.+++++--
T Consensus 688 ~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spll 748 (1233)
T KOG1824|consen 688 AELLEA-VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLL 748 (1233)
T ss_pred HHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccc
Confidence 222221 2233445565555555666777777776443222222245678899999988643
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.75 Score=44.30 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=137.9
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCCCchHHHHH-hcCccchhhhhccC--CCHHHHHHHHHHHHHhhccCCCccccc-cCC
Q 014196 122 MVSTEVIGRRRAAIKALIQLANGTYTNKAIMV-EAGILTKLPKNVDA--VDESTRHEFGELLLSLSSLANTHIPLS-SSE 197 (429)
Q Consensus 122 lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~i~~Lv~lL~~--~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g 197 (429)
+++.=++-.+--|+.+|.++....+ .|..+. +...-..++.+++. +..+.+.+..-++|-|+........|- --.
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~d 235 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3344456678888999999999874 555544 43334445666653 235667777778888886654443232 234
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-CC-CChhHHHhcCcHHHHHHhccCC---c-chH---HHHHHHHHH----
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYNLSA-VL-DNARPMVSNGVVHTLLKLCSMK---E-RLS---EKSLATLGN---- 264 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~-~n~~~iv~~G~v~~Lv~lL~~~---~-~~~---~~a~~~L~~---- 264 (429)
.|.-|+++++.....++-+-+++.+.|++. .+ .....+.-.|-+.+-++.|... + +++ +..-..|.+
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 577788888876555677789999999987 32 3334444455455555555421 1 222 122222211
Q ss_pred hhCCh------------------------hcHHHHh-cCCCChHHHHHhcccCCChh-HHHHHHHHHHHHhhCCHHHHHH
Q 014196 265 LVVTS------------------------TGKKAME-DSPLVPESLIEILTWEEKPK-CQELSAYILMILAHQSSEQRDK 318 (429)
Q Consensus 265 La~~~------------------------e~~~~i~-~~~~i~~~Lv~~L~~~~s~~-~~e~A~~~L~~L~~~~~~~~~~ 318 (429)
++..+ .+...+. +.-.+...|.+++. ...+. .-..|+.=+..+....|+.+..
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq-~n~~nt~i~vAc~Di~~~Vr~~PE~~~v 394 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQ-SNNPNTWICVACSDIFQLVRASPEINAV 394 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHh-cCCCCceEeeeHhhHHHHHHhCchHHHH
Confidence 11111 1222222 22234446666776 33333 1223455555556667899999
Q ss_pred HHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 319 MAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 319 i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
+.+-|+=..+.+++...++++|-.|...++.+-
T Consensus 395 l~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 395 LSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 999999999999999999999999999887664
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=93.49 E-value=1 Score=42.41 Aligned_cols=194 Identities=14% Similarity=0.174 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHHhccCCCchHHHHHh-cCccchhhh-------hccCCC--H--HH-HHHHHHHHHHhhccCCCcccc
Q 014196 127 VIGRRRAAIKALIQLANGTYTNKAIMVE-AGILTKLPK-------NVDAVD--E--ST-RHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 127 ~~~~~~~A~~aL~nLa~~~~~nk~~iv~-~G~i~~Lv~-------lL~~~~--~--~~-~~~aa~~L~~Ls~~~~~~~~i 193 (429)
+++.++.|+.-|..--...++-.-.+.. -|.+..|.+ .+..+. . .. .-+|.++|-.++++++.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677887766555433222222333443 354433321 122222 1 11 223455677888899999888
Q ss_pred ccCCcHHHHHHhhhcCCc----HHHHHHHHHHHHHhccCC--CChhHHHhcCcHHHHHHhccCCcch-HHHHHHHHHHhh
Q 014196 194 SSSEILPFLVGILESGSS----VETKELCIGALYNLSAVL--DNARPMVSNGVVHTLLKLCSMKERL-SEKSLATLGNLV 266 (429)
Q Consensus 194 ~~~g~i~~Lv~lL~~~~~----~~~~~~A~~aL~nLs~~~--~n~~~iv~~G~v~~Lv~lL~~~~~~-~~~a~~~L~~La 266 (429)
.++...-.|..+|...+. +.+|-.+++++..|.+.+ +-...+.+.+.||..+..+..+++. +--|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 888877777777765432 357778899999998743 3346678899999999999766543 444566666766
Q ss_pred CChhcHHHHhcCCC-------ChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHh
Q 014196 267 VTSTGKKAMEDSPL-------VPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAK 321 (429)
Q Consensus 267 ~~~e~~~~i~~~~~-------i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~ 321 (429)
.+++|-+.+..... +...+|..+....+++.-++.+.+-..|+.+ +..+..+..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHHH
Confidence 66666665544311 1123333333357788888888888888865 455555543
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.41 E-value=1.3 Score=47.52 Aligned_cols=220 Identities=12% Similarity=0.075 Sum_probs=132.2
Q ss_pred hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH-HhccCCCchHHHHHhcCccchhhhhccCCCHHHH--HHHHHHH
Q 014196 104 VKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALI-QLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR--HEFGELL 180 (429)
Q Consensus 104 ~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~-nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~--~~aa~~L 180 (429)
..-|...++.|+...|..|.....++.+-.+..+|. .+.+..+.. . ..++++...++.. .... -++..++
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~-~-----~v~~~~~s~~~~d-~~~~en~E~L~al 566 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS-Y-----EVVKPLDSALHND-EKGLENFEALEAL 566 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch-h-----hhhhhhcchhhhh-HHHHHHHHHHHHh
Confidence 345677788999999999998888888888888887 555544211 1 2333443333322 1222 2355677
Q ss_pred HHhhccCC-CccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh-hHHHh-cCcHHHHHHhccCCc-chHH
Q 014196 181 LSLSSLAN-THIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA-RPMVS-NGVVHTLLKLCSMKE-RLSE 256 (429)
Q Consensus 181 ~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~-~G~v~~Lv~lL~~~~-~~~~ 256 (429)
.||++.++ .+..|...-+++.+-.++...++ ..++.++..+.||..++.-- ..+++ ...++....++...+ .+..
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~-~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~l 645 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENP-ALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFEL 645 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccH-HHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhh
Confidence 77876653 34455544444444455555555 67888999999999887655 34555 355666666555432 4444
Q ss_pred HHHHHHHHhhCChhc-HHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHh
Q 014196 257 KSLATLGNLVVTSTG-KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLA 332 (429)
Q Consensus 257 ~a~~~L~~La~~~e~-~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll 332 (429)
.+++.+..++...++ ...+.+.-.....++.++. +.....|-..+++..++...+.+....+.....++.+..+-
T Consensus 646 A~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~-~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~ 721 (748)
T KOG4151|consen 646 AGAGALAAITSVVENHCSRILELLEWLEILVRAIQ-DEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQ 721 (748)
T ss_pred hccccccchhhcchhhhhhHHHhhcchHHHHHhhc-CchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence 444455434332221 1112222222346777887 78888998888888887766666777776666555554443
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.26 Score=43.99 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=74.3
Q ss_pred cHHHHHHhhhcCCcHHHHHHHHHHHHH-hccCCCC-hhHHHhcCcHHHHHHhccC---------Cc-chHHHHHHHHHHh
Q 014196 198 ILPFLVGILESGSSVETKELCIGALYN-LSAVLDN-ARPMVSNGVVHTLLKLCSM---------KE-RLSEKSLATLGNL 265 (429)
Q Consensus 198 ~i~~Lv~lL~~~~~~~~~~~A~~aL~n-Ls~~~~n-~~~iv~~G~v~~Lv~lL~~---------~~-~~~~~a~~~L~~L 265 (429)
....+++.+.++... . ..+.-|.- |-..+.. ...+++.||+..|+.+|.. .+ .....++.+|..|
T Consensus 67 ~p~~~i~~L~~~~~~-~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSRPST-S--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT--H-H--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCcc-H--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 345566666665441 1 12222221 1122222 3678889999999998852 12 5677889999999
Q ss_pred hCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 266 VVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 266 a~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
..+..|...+.+..+++..|+..|. +.+..++..+..+|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~-s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLD-SPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 9999999999998888889999998 788999999999999988
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=93.21 E-value=2.4 Score=42.41 Aligned_cols=239 Identities=15% Similarity=0.124 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCch
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
.+.+.-++..|.++ ....|+.++-.|..-+. ++..|..+...|.+..++..+.. ++..+--.++.++..+-..+..+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 34577788888844 45777888888887775 67899999999999999999944 33324444444444444333234
Q ss_pred HHHHHhcCccchhhhhcc--CC-C---HH----------HHHHHHHHHHHhhccCC---CccccccCCcHHHHHHhhhcC
Q 014196 149 KAIMVEAGILTKLPKNVD--AV-D---ES----------TRHEFGELLLSLSSLAN---THIPLSSSEILPFLVGILESG 209 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~--~~-~---~~----------~~~~aa~~L~~Ls~~~~---~~~~i~~~g~i~~Lv~lL~~~ 209 (429)
-..+.+.+.+..+..++. .. + .. ..+.....+..+-.... ..... .-
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~--------------~l 164 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPP--------------EL 164 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCc--------------cc
Confidence 444445666666677776 11 0 00 00000111111110000 00000 00
Q ss_pred CcHHHHHHHHHHHHHhc--------------c-CCCChhHHHhcCcHHHHHHhccC------------C----c-chHHH
Q 014196 210 SSVETKELCIGALYNLS--------------A-VLDNARPMVSNGVVHTLLKLCSM------------K----E-RLSEK 257 (429)
Q Consensus 210 ~~~~~~~~A~~aL~nLs--------------~-~~~n~~~iv~~G~v~~Lv~lL~~------------~----~-~~~~~ 257 (429)
+ -+.-|+.+|-.++ . .+..+..+.+.|++..+++++.+ . + ...+.
T Consensus 165 s---p~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~ 241 (361)
T PF07814_consen 165 S---PQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLER 241 (361)
T ss_pred c---cccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHH
Confidence 0 1112333333331 1 12245778888999999988741 0 1 45678
Q ss_pred HHHHHHHhhC-ChhcHHHHhcCCC--ChHHHHHhccc--CCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHH
Q 014196 258 SLATLGNLVV-TSTGKKAMEDSPL--VPESLIEILTW--EEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHV 327 (429)
Q Consensus 258 a~~~L~~La~-~~e~~~~i~~~~~--i~~~Lv~~L~~--~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~ 327 (429)
|+.+|.+.+. +.+++........ .+..+..++.. .........++.++.|+.+.+++.++.+...++...
T Consensus 242 cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~ 316 (361)
T PF07814_consen 242 CLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQ 316 (361)
T ss_pred HHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccc
Confidence 9999998776 5666666655432 22122222220 111223567888888998888777777766554433
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.6 Score=43.24 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCC
Q 014196 214 TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEE 293 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~ 293 (429)
-++.|+.+|+.||..+.|...++..+-++.+ |+- ...|+++|....
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRl-----------E~l-----------------------~~~L~r~l~~~e 185 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRL-----------ERL-----------------------FHTLVRLLGMRE 185 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHH-----------HHH-----------------------HHHHHHHhcccc
Confidence 4778999999999999998877766654332 111 125677776567
Q ss_pred ChhHHHHHHHHHHHHhhCCHHHH-HHHHhCCchHHHHHHhhcCCHHHHHH
Q 014196 294 KPKCQELSAYILMILAHQSSEQR-DKMAKSGIVHVSLQLALLGSPLAQRR 342 (429)
Q Consensus 294 s~~~~e~A~~~L~~L~~~~~~~~-~~i~~~G~v~~L~~ll~~~~~~~k~~ 342 (429)
++..+|.|+.+|.++|..++... ....+.+.|..|+..+..+...++..
T Consensus 186 ~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~~~~~ 235 (257)
T PF12031_consen 186 DQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQNAHQV 235 (257)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999877655 55556799999999998765444433
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.73 Score=48.02 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=128.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCC--chHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc---CCCc
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTY--TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL---ANTH 190 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~--~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~---~~~~ 190 (429)
|...+.+|++..+.+++.|+.....|+.--. ..-..+.+.|.| |..-|....+++.-....+++.+.+. +..+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 4445668888889999999887777653210 113455566765 55555555566655555555555433 3344
Q ss_pred cccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhc-CcHHHHHHhccCCc-chHHHHHHHHHHhhCC
Q 014196 191 IPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSN-GVVHTLLKLCSMKE-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 191 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~-G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~ 268 (429)
+.| .|.+|.|..+|++... ++..+....+..+|.......-..|= -+.--|+++|+... ++++.|..+++-++.-
T Consensus 684 pPi--~~ilP~ltPILrnkh~-Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 684 PPI--SGILPSLTPILRNKHQ-KVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred Cch--hhccccccHhhhhhhH-HHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 454 6899999999999886 78888888888888765443222221 22334677776554 8888888888877651
Q ss_pred hhcHHHHhcCCCChHHHHHhcccCC---ChhHHHHHHHHHHHHhh---------CCHHHHHHHHhCCchHHHHHHhhcCC
Q 014196 269 STGKKAMEDSPLVPESLIEILTWEE---KPKCQELSAYILMILAH---------QSSEQRDKMAKSGIVHVSLQLALLGS 336 (429)
Q Consensus 269 ~e~~~~i~~~~~i~~~Lv~~L~~~~---s~~~~e~A~~~L~~L~~---------~~~~~~~~i~~~G~v~~L~~ll~~~~ 336 (429)
|.-+. +...|+.-|. .. ...+...|+++....|. .+.+.-+.-++.|++..+.-+.+.-.
T Consensus 761 ------iGPqd-vL~~LlnnLk-vqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig 832 (975)
T COG5181 761 ------IGPQD-VLDILLNNLK-VQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIG 832 (975)
T ss_pred ------cCHHH-HHHHHHhcch-HHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHH
Confidence 11111 1113333332 11 11222344455544442 12233445667788887777776544
Q ss_pred HHHHHHHHHHHHHHHh
Q 014196 337 PLAQRRASKLLQWFKD 352 (429)
Q Consensus 337 ~~~k~~A~~lL~~l~~ 352 (429)
...++..-.++-++.|
T Consensus 833 ~~s~dYvy~itPlleD 848 (975)
T COG5181 833 QASLDYVYSITPLLED 848 (975)
T ss_pred HHHHHHHHHhhHHHHh
Confidence 4445555555555554
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.91 E-value=2.4 Score=45.47 Aligned_cols=251 Identities=14% Similarity=0.121 Sum_probs=139.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH--
Q 014196 75 QKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM-- 152 (429)
Q Consensus 75 ~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i-- 152 (429)
+.+=..|.+....+..+|+.++..+...++. .+.. ++..|-.+|.++.+.+|-+|..+|..+|...+ .+...
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P-~~v~~cN 321 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP-QAVTVCN 321 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC-ccccccc
Confidence 3444455555677888899999888765432 2222 67788888899999999999999999875542 21111
Q ss_pred ------H-hcC---ccchhhhhccCCCHHHH----HHHHHHHHHhhccCCCccccc-------------cCCcHHHHHHh
Q 014196 153 ------V-EAG---ILTKLPKNVDAVDESTR----HEFGELLLSLSSLANTHIPLS-------------SSEILPFLVGI 205 (429)
Q Consensus 153 ------v-~~G---~i~~Lv~lL~~~~~~~~----~~aa~~L~~Ls~~~~~~~~i~-------------~~g~i~~Lv~l 205 (429)
+ +.+ +-..+..+|..+..+.. ...+....+++ ++.+..+. ..+.+..|..+
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~~~ 399 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNM 399 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1 111 12223444544443322 22334444444 12222221 24556667777
Q ss_pred hhcCCcHHHHHHHHHHHHHhcc-CCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhC-Ch---hcHHHHhcCCC
Q 014196 206 LESGSSVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVV-TS---TGKKAMEDSPL 280 (429)
Q Consensus 206 L~~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~-~~---e~~~~i~~~~~ 280 (429)
|+....-+-|++...++..+.. .++.+.. ++..|.+.+.|+ +...-+..+|..|-. +| .--..|.
T Consensus 400 Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc-e~~~i~~rILhlLG~EgP~a~~Pskyir---- 469 (865)
T KOG1078|consen 400 LREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC-EFTQIAVRILHLLGKEGPKAPNPSKYIR---- 469 (865)
T ss_pred HHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc-cchHHHHHHHHHHhccCCCCCCcchhhH----
Confidence 7653322556666666665554 4444432 344566666666 555555666655433 11 1111111
Q ss_pred ChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 281 VPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 281 i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.+...+- -.+...+-.|+.+|..+..+++..+. -+.-.|..++.+..+.++++|...|..+.+
T Consensus 470 ---~iyNRvi-LEn~ivRaaAv~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 470 ---FIYNRVI-LENAIVRAAAVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred ---HHhhhhh-hhhhhhHHHHHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 1111110 13556677788888877755443333 234556677778889999999999998884
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.7 Score=36.85 Aligned_cols=89 Identities=19% Similarity=0.141 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhchHH-HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHh--cCccchhhhhc
Q 014196 89 KEMAAKEIEKLAKEDVKI-KKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVE--AGILTKLPKNV 165 (429)
Q Consensus 89 ~~~Aa~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~--~G~i~~Lv~lL 165 (429)
|..++..|...+..-+.. ...+ .-.+++++.++.+.|..+|..|+.+|.|++... +..+.. ...++.|.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLS 77 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 445555666554322221 1122 235899999999999999999999999998764 333332 35666777777
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 014196 166 DAVDESTRHEFGELLLSL 183 (429)
Q Consensus 166 ~~~~~~~~~~aa~~L~~L 183 (429)
..++..++ .+|..|-.|
T Consensus 78 ~D~d~~Vr-~~a~~Ld~l 94 (97)
T PF12755_consen 78 ADPDENVR-SAAELLDRL 94 (97)
T ss_pred cCCchhHH-HHHHHHHHH
Confidence 77776655 444555443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.88 E-value=4.5 Score=43.37 Aligned_cols=245 Identities=13% Similarity=0.065 Sum_probs=152.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
....+.+|+..+..|.+.|+-.-..+.+.++..|... .+++..++.=..++++.++..|+..+..+-.+. -..
T Consensus 48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~--i~e 120 (734)
T KOG1061|consen 48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDK--ITE 120 (734)
T ss_pred HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeehH--HHH
Confidence 4556788888888788887777778888887666421 245666666667788999888887776554432 122
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD 230 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 230 (429)
. ...+|..+++..++.+|..++.....+- +.+.....+.|.++.|..++.+.++ .+..+|+.+|..+...+.
T Consensus 121 y-----~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p-~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 121 Y-----LCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNP-MVVANALAALSEIHESHP 192 (734)
T ss_pred H-----HHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCc-hHHHHHHHHHHHHHHhCC
Confidence 2 3567888898888888887776655554 2344555588999999999997777 688899999999986544
Q ss_pred Ch-hHHHhcCcHHHHHHhccCCcchHHHH-HHHHHHhhCC-hh---cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 231 NA-RPMVSNGVVHTLLKLCSMKERLSEKS-LATLGNLVVT-ST---GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 231 n~-~~iv~~G~v~~Lv~lL~~~~~~~~~a-~~~L~~La~~-~e---~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
+. ..-...-.+..++..+. +..|.+ +.+|..++.. +. ....|.+ .+...|. +.++.+.-.++.+
T Consensus 193 ~~~~~~l~~~~~~~lL~al~---ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~------r~~p~Lq-h~n~avvlsavKv 262 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALN---ECTEWGQIFILDCLAEYVPKDSREAEDICE------RLTPRLQ-HANSAVVLSAVKV 262 (734)
T ss_pred CCCcccccHHHHHHHHHHHH---HhhhhhHHHHHHHHHhcCCCCchhHHHHHH------Hhhhhhc-cCCcceEeehHHH
Confidence 31 11111122333344343 333433 3344455541 21 2223332 3444555 6677777778888
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHH
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRR 342 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~ 342 (429)
++.+...-.. .....-...-++|+.++...+ ..+--
T Consensus 263 ~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyv 298 (734)
T KOG1061|consen 263 ILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES-EIQYV 298 (734)
T ss_pred HHHHHHHHHH-HHHHHHHHhcccceeeecccc-hhhHH
Confidence 8876653223 333344456788888887765 44433
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.2 Score=39.54 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch-HHHHHHHhcCcHHHHHHhhcC---------CCHHHHHHHHHHHHHh
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV-KIKKLMAELGVIQMLVSMVST---------EVIGRRRAAIKALIQL 141 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s---------~~~~~~~~A~~aL~nL 141 (429)
.....+++.|.++.... ..+..|+..-+..+ .--+.|++.||+..|+.+|.. .+...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 34566788887754332 45555554444333 334667788999999998863 3457888899999888
Q ss_pred ccCCCchHHHHH-hcCccchhhhhccCCCHHHHHHHHHHHHHhh
Q 014196 142 ANGTYTNKAIMV-EAGILTKLPKNVDAVDESTRHEFGELLLSLS 184 (429)
Q Consensus 142 a~~~~~nk~~iv-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls 184 (429)
.... .....++ ..+++..|+.+|.+.+..++..+..+|..+|
T Consensus 144 ~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8775 4566666 5789999999999988999988888887765
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.50 E-value=1.6 Score=44.95 Aligned_cols=147 Identities=20% Similarity=0.134 Sum_probs=100.7
Q ss_pred hhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCc---HHHHHHHHHHHHHhccCCCChhHHHhc
Q 014196 162 PKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSS---VETKELCIGALYNLSAVLDNARPMVSN 238 (429)
Q Consensus 162 v~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~---~~~~~~A~~aL~nLs~~~~n~~~iv~~ 238 (429)
..++.++....+..+...|..++.+......+....++..|.+++.+|+. ..+...+++++..+-.+.-.-...+..
T Consensus 89 ~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~~ 168 (713)
T KOG2999|consen 89 MEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVSN 168 (713)
T ss_pred HHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeeccc
Confidence 45566777777777666777777666555566677889999999998754 345666777777776665544555665
Q ss_pred CcHHHHHHhccCC--c-chHHHHHHHHHHhhCChh-cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 239 GVVHTLLKLCSMK--E-RLSEKSLATLGNLVVTST-GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 239 G~v~~Lv~lL~~~--~-~~~~~a~~~L~~La~~~e-~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
..|.....+..-. + .+-..|+..|.+++.+.. .++-+.++ .-+..|+..+. .++...+..|...+-.+-.
T Consensus 169 ~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~ee-v~i~~li~hlq-~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 169 DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEE-VPIETLIRHLQ-VSNQRIQTCAIALLNALFR 242 (713)
T ss_pred HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhc-CcHHHHHHHHH-hcchHHHHHHHHHHHHHHh
Confidence 5666666655422 3 778899999999988655 55555554 44457888887 5777777777766665554
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=92.37 E-value=5 Score=39.16 Aligned_cols=184 Identities=14% Similarity=0.108 Sum_probs=97.8
Q ss_pred ccCCCHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC---CCChhHHHhcC
Q 014196 165 VDAVDESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGALYNLSAV---LDNARPMVSNG 239 (429)
Q Consensus 165 L~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~---~~n~~~iv~~G 239 (429)
+.......|+.+...+.++-...-....+. ....+..+.+.++.|.. +-+.-|+.++.-|+.. ......+.+ .
T Consensus 52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~ 129 (309)
T PF05004_consen 52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSEEIFE-E 129 (309)
T ss_pred HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHHHHHH-H
Confidence 334446677777666555543221112222 23457778888888876 3455577777766654 234445543 6
Q ss_pred cHHHHHHhccCCc---chHHHHHHHHHHhh---C-ChhcHHHHhcC-CCChHHHHHhcccC---------CChhHHHHHH
Q 014196 240 VVHTLLKLCSMKE---RLSEKSLATLGNLV---V-TSTGKKAMEDS-PLVPESLIEILTWE---------EKPKCQELSA 302 (429)
Q Consensus 240 ~v~~Lv~lL~~~~---~~~~~a~~~L~~La---~-~~e~~~~i~~~-~~i~~~Lv~~L~~~---------~s~~~~e~A~ 302 (429)
..|+|...+.|.+ ..+..|+.+|.-++ . .++......+. .++ ....++... +++...-.|+
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~i--f~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESI--FLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH--HHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 7888888888764 33344554555433 2 22222211111 111 111122211 1233444444
Q ss_pred HHHHHHhhC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 303 YILMILAHQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 303 ~~L~~L~~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
.+-..|... +........ ...+|.|..+|.+.+..+|..|...|-.+-+.
T Consensus 208 ~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 208 SAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 443344432 222222222 34589999999999999999999988777653
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.73 E-value=19 Score=37.72 Aligned_cols=229 Identities=12% Similarity=0.097 Sum_probs=110.2
Q ss_pred HHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHH
Q 014196 94 KEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173 (429)
Q Consensus 94 ~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~ 173 (429)
+.+..+.+++++.+.++ .|.|-.-|++.-..++-.++.++..++..+ - ....++ .+|..|-.+|.++....|
T Consensus 249 r~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v-~~~~~~-~~vs~L~~fL~s~rv~~r 320 (898)
T COG5240 249 RATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEEN-V-GSQFVD-QTVSSLRTFLKSTRVVLR 320 (898)
T ss_pred HHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhc-c-CHHHHH-HHHHHHHHHHhcchHHHH
Confidence 33444555565555554 455556666655677888888887777553 1 122222 234455566777777778
Q ss_pred HHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcc
Q 014196 174 HEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKER 253 (429)
Q Consensus 174 ~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~ 253 (429)
-.|..+|-.|+.....+..... +-+-.++.+.+. .+...|..+|..-- .+++..+++. .|+..+.=++| .
T Consensus 321 FsA~Riln~lam~~P~kv~vcN----~evEsLIsd~Nr-~IstyAITtLLKTG-t~e~idrLv~--~I~sfvhD~SD--~ 390 (898)
T COG5240 321 FSAMRILNQLAMKYPQKVSVCN----KEVESLISDENR-TISTYAITTLLKTG-TEETIDRLVN--LIPSFVHDMSD--G 390 (898)
T ss_pred HHHHHHHHHHHhhCCceeeecC----hhHHHHhhcccc-cchHHHHHHHHHcC-chhhHHHHHH--HHHHHHHhhcc--C
Confidence 8888899999876544433322 122223333332 23344444443311 2333333321 22223222222 3
Q ss_pred hHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHh
Q 014196 254 LSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLA 332 (429)
Q Consensus 254 ~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll 332 (429)
...-+..++..|+. .|.-+..+.+ -|...|...|.-+-+..++.++..+..+.|+.++.+ +..|++..
T Consensus 391 FKiI~ida~rsLsl~Fp~k~~s~l~------FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fI 459 (898)
T COG5240 391 FKIIAIDALRSLSLLFPSKKLSYLD------FLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFI 459 (898)
T ss_pred ceEEeHHHHHHHHhhCcHHHHHHHH------HHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHH
Confidence 33344444555544 3443443333 222222223444555555555555555544444433 33444444
Q ss_pred hcCCHHHHHHHHHHHHHHHhc
Q 014196 333 LLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 333 ~~~~~~~k~~A~~lL~~l~~~ 353 (429)
.+..- -+-+.++|+.|++.
T Consensus 460 EDcey--~~I~vrIL~iLG~E 478 (898)
T COG5240 460 EDCEY--HQITVRILGILGRE 478 (898)
T ss_pred hhcch--hHHHHHHHHHhccc
Confidence 44321 23455566666653
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.64 E-value=23 Score=38.35 Aligned_cols=203 Identities=17% Similarity=0.156 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCH-----------------HHHHHHHHHHHHhccCCCc
Q 014196 85 SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVI-----------------GRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~-----------------~~~~~A~~aL~nLa~~~~~ 147 (429)
++..|..-+..|+..+..+|.-+... |.-+..+|.+.++ .+...|+.++..|.....+
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd 293 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD 293 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence 34455555566666665555444333 5556777776554 4444455555555433223
Q ss_pred hH-HHHHh--------------cCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhc----
Q 014196 148 NK-AIMVE--------------AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILES---- 208 (429)
Q Consensus 148 nk-~~iv~--------------~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~---- 208 (429)
|. ..|+. .|.+--++++|.+++.+.+..+..+...|... --+.-++.+|+.
T Consensus 294 nnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss----------rNvediv~~Lkke~~k 363 (948)
T KOG1058|consen 294 NNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS----------RNVEDIVQFLKKEVMK 363 (948)
T ss_pred cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh----------ccHHHHHHHHHHHHHh
Confidence 32 22221 12222223444445555555555544444422 224445555532
Q ss_pred ------CCcHHHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhh-CChhcHHHHhcCC
Q 014196 209 ------GSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLV-VTSTGKKAMEDSP 279 (429)
Q Consensus 209 ------~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La-~~~e~~~~i~~~~ 279 (429)
.+..+-++.-..++...+.. ++ +.+.+|+.|++.+.|.. ......+..+.+.- ..|..|..|..
T Consensus 364 T~~~e~d~~~~yRqlLiktih~cav~Fp~-----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~-- 436 (948)
T KOG1058|consen 364 THNEESDDNGKYRQLLIKTIHACAVKFPE-----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE-- 436 (948)
T ss_pred ccccccccchHHHHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH--
Confidence 11113355566777766642 22 23567899999998763 33333444444333 36777777665
Q ss_pred CChHHHHHhcccCCChhHHHHHHHHHHHHhhCCH
Q 014196 280 LVPESLIEILTWEEKPKCQELSAYILMILAHQSS 313 (429)
Q Consensus 280 ~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~ 313 (429)
.|++-+..-.+...-+.|+++++.-|....
T Consensus 437 ----~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 437 ----KLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred ----HHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 344443322455566677788877776544
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=91.47 E-value=1.9 Score=40.64 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=78.8
Q ss_pred chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHH
Q 014196 253 RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQL 331 (429)
Q Consensus 253 ~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~l 331 (429)
.....|+.+|.-++- +|..|..+.+..++- .|+++|.....+..+-.++.+|..+...++.+.+...+.|++..++.+
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~-lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNME-LLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHH-HHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 345567788887666 899999998877775 999999635678888889999988888888888899999999999999
Q ss_pred hhcC--CHHHHHHHHHH-HHHHHh
Q 014196 332 ALLG--SPLAQRRASKL-LQWFKD 352 (429)
Q Consensus 332 l~~~--~~~~k~~A~~l-L~~l~~ 352 (429)
+++. +..+|-+.... +-.+..
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHcc
Confidence 9985 56788888874 444443
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.45 E-value=11 Score=40.26 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHhccCCCchHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEV--IGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~--~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+..+-+.|.+.|+....-|+..+.++... +++..+... |+ .+|.+++ .-++..|+.+|..|-..+++
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~~D--I~---KlLvS~~~~~~vkqkaALclL~L~r~spD--- 181 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFADD--IP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD--- 181 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhhhh--hH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc---
Confidence 345555666677777777777777777542 345554432 44 5666654 45778888888887665432
Q ss_pred HHHhcCccchhhhhccCC
Q 014196 151 IMVEAGILTKLPKNVDAV 168 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~ 168 (429)
.+-..+....++.+|...
T Consensus 182 l~~~~~W~~riv~LL~D~ 199 (938)
T KOG1077|consen 182 LVNPGEWAQRIVHLLDDQ 199 (938)
T ss_pred ccChhhHHHHHHHHhCcc
Confidence 111123444455555443
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.08 E-value=26 Score=38.07 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=88.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhh
Q 014196 83 FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLP 162 (429)
Q Consensus 83 ~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv 162 (429)
...+.++..||.+|-.|-.-+++.+..+.+ .+=.+|.+.++-+.-.|+.|.-.++-+ +-.+. ++-...|.
T Consensus 154 D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e-----~I~~LLaD~splVvgsAv~AF~evCPe----rldLI-HknyrklC 223 (968)
T KOG1060|consen 154 DPSPYVRKTAAHAIPKLYSLDPEQKDQLEE-----VIKKLLADRSPLVVGSAVMAFEEVCPE----RLDLI-HKNYRKLC 223 (968)
T ss_pred CCcHHHHHHHHHhhHHHhcCChhhHHHHHH-----HHHHHhcCCCCcchhHHHHHHHHhchh----HHHHh-hHHHHHHH
Confidence 457889999999999887777776666544 344567777888888888877766633 22222 12233344
Q ss_pred hhccCCCHHHHHHHHHHHHHhhccC------------C-------------CccccccCCcHHHHH----HhhhcCCcHH
Q 014196 163 KNVDAVDESTRHEFGELLLSLSSLA------------N-------------THIPLSSSEILPFLV----GILESGSSVE 213 (429)
Q Consensus 163 ~lL~~~~~~~~~~aa~~L~~Ls~~~------------~-------------~~~~i~~~g~i~~Lv----~lL~~~~~~~ 213 (429)
.+|-..+.-.+......|..-+... + .+..+....-+..|+ .+|.+.++ .
T Consensus 224 ~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~-s 302 (968)
T KOG1060|consen 224 RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP-S 302 (968)
T ss_pred hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCc-H
Confidence 4443333222222222222111110 0 011111111122222 34455565 6
Q ss_pred HHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHH
Q 014196 214 TKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGN 264 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~ 264 (429)
+..+++.+.|.++...++ ..++.+|+.+|..+.+++.-.+..+..
T Consensus 303 VVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~~~vqyvvL~nIa~ 347 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSNREVQYVVLQNIAT 347 (968)
T ss_pred HHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcCCcchhhhHHHHHH
Confidence 778888999999854322 245778888888664444433333333
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=90.80 E-value=1.7 Score=38.64 Aligned_cols=93 Identities=14% Similarity=0.059 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhh
Q 014196 85 SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKN 164 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~l 164 (429)
++..|..++..+..++..-+.. ++ ..+|.+..+|.++++.+|..|+.+|..|...+- -|.. ...+..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~----ve-~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-ik~k---~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL----VE-PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-IKVK---GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH----HH-hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-eeeh---hhhhHHHHHH
Confidence 4678888999999988765532 22 238899999999999999999999999987642 2221 1122556777
Q ss_pred ccCCCHHHHHHHHHHHHHhhcc
Q 014196 165 VDAVDESTRHEFGELLLSLSSL 186 (429)
Q Consensus 165 L~~~~~~~~~~aa~~L~~Ls~~ 186 (429)
+...+++.+..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888744
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.30 E-value=8.3 Score=42.16 Aligned_cols=331 Identities=15% Similarity=0.104 Sum_probs=171.3
Q ss_pred cchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chHHHHHHHhcCcHH
Q 014196 39 KSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVKIKKLMAELGVIQ 117 (429)
Q Consensus 39 PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~~r~~i~~~G~i~ 117 (429)
|+...|.++..||.... .. ..+.. ....-++.....+.....+.+.+++.....++.. +...+..+....++|
T Consensus 328 ~~~~v~~~~~~~~~~L~--~~-~~~~~---~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp 401 (759)
T KOG0211|consen 328 GSWRVSYMVADKFSELS--SA-VGPSA---TRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP 401 (759)
T ss_pred hhHHHHHHHhhhhhhHH--HH-hcccc---CcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhH
Confidence 77888888888886431 10 11110 0111245556666665566666677666666642 223455666666688
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccch----hhhhccCCCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 118 MLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTK----LPKNVDAVDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 118 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~----Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
.+-.+..+.+..++.+.+....+++--.. ....++. +...++....+++.+... .++........+
T Consensus 402 ~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-------k~~ti~~llp~~~~~l~de~~~V~lnli~---~ls~~~~v~~v~ 471 (759)
T KOG0211|consen 402 EVQVLVLDNALHVRSALASVITGLSPILP-------KERTISELLPLLIGNLKDEDPIVRLNLID---KLSLLEEVNDVI 471 (759)
T ss_pred HHHHHHhcccchHHHHHhccccccCccCC-------cCcCccccChhhhhhcchhhHHHHHhhHH---HHHHHHhccCcc
Confidence 88888888888888877766666543321 2222222 222333333444444332 233222222333
Q ss_pred c----cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC
Q 014196 194 S----SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 194 ~----~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~ 268 (429)
+ ....+|.++.+-..... .++......+..++.... ..+.+.-.-+.+..-+.+.. .+++.|+..|..++..
T Consensus 472 g~~~~s~slLp~i~el~~d~~w-Rvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~ 548 (759)
T KOG0211|consen 472 GISTVSNSLLPAIVELAEDLLW-RVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVET 548 (759)
T ss_pred cchhhhhhhhhhhhhhccchhH-HHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHH
Confidence 3 45667777777665543 566666677766665432 22222222222223343433 7888888888777652
Q ss_pred hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 269 STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 269 ~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
-....... .-++ .+..... .++-..+...+.++..++. -.-+.+..+-.+|.+..+..+..+.+|-+++..|+
T Consensus 549 ~G~~w~~~--~~i~-k~L~~~~-q~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~ 621 (759)
T KOG0211|consen 549 FGSEWARL--EEIP-KLLAMDL-QDNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLP 621 (759)
T ss_pred hCcchhHH--HhhH-HHHHHhc-CcccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHH
Confidence 21111111 1233 3333333 2334444444444443332 12223444456899999999999999999999888
Q ss_pred HHHhccccCCCC-CCCCCccccccCCCCChhhhHHHHHHHHHHHHHHHHH
Q 014196 349 WFKDERQAKMGP-HSGPQTRRVSIGSPVSPREAQEGKKMMKNLVQQSLHK 397 (429)
Q Consensus 349 ~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~ 397 (429)
.+...-...... ...|... ....+.+-|.+-.+..|...+-.-.++.
T Consensus 622 ~i~~~L~~~~~~~~v~pll~--~L~~d~~~dvr~~a~~a~~~i~l~~~~~ 669 (759)
T KOG0211|consen 622 KILKLLDESVRDEEVLPLLE--TLSSDQELDVRYRAILAFGSIELSRLES 669 (759)
T ss_pred HHHhhcchHHHHHHHHHHHH--HhccCcccchhHHHHHHHHHHHHHHHhh
Confidence 777532100000 0011111 1122225556666666666555544444
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.29 E-value=5.4 Score=44.80 Aligned_cols=213 Identities=12% Similarity=0.126 Sum_probs=104.7
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHHhc--CccchhhhhccCCCHHHHHHHHH---HHHHhhccCCCccccccCCcHH
Q 014196 126 EVIGRRRAAIKALIQLANGTYTNKAIMVEA--GILTKLPKNVDAVDESTRHEFGE---LLLSLSSLANTHIPLSSSEILP 200 (429)
Q Consensus 126 ~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~--G~i~~Lv~lL~~~~~~~~~~aa~---~L~~Ls~~~~~~~~i~~~g~i~ 200 (429)
.+..+|..+-..|..++... .......+. .....|..-+++.....+..... .|..+.. .++...+ ...||
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~-~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS-AEHCDLI--PKLIP 741 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc-HHHHHHH--HHHHH
Confidence 46788999988888887773 222222111 11122233334434444444333 3333332 1222222 11233
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcC------cHHHHHHhccCC---cchHHHHHHHHHHhhCChhc
Q 014196 201 FLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNG------VVHTLLKLCSMK---ERLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 201 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G------~v~~Lv~lL~~~---~~~~~~a~~~L~~La~~~e~ 271 (429)
-++=.++..+. ..++.|..+|..++. .....+.| .|...+..+... +.....+.. |..+...-..
T Consensus 742 EvIL~~Ke~n~-~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e 815 (1176)
T KOG1248|consen 742 EVILSLKEVNV-KARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQE 815 (1176)
T ss_pred HHHHhcccccH-HHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHH
Confidence 33333344554 689999999999884 22222222 444444444322 222222222 2222111001
Q ss_pred HHHHhcCCC---ChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHH
Q 014196 272 KKAMEDSPL---VPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348 (429)
Q Consensus 272 ~~~i~~~~~---i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~ 348 (429)
...+.+.+- ++..+.-+|. ..++.....|++.+..++..-++..-.--..-++|.++.++++++-+.+.+..-+|.
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~-s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLA-SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLE 894 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111111111 2223344555 688889999999988877654433222222346788888888877777777665554
Q ss_pred H
Q 014196 349 W 349 (429)
Q Consensus 349 ~ 349 (429)
.
T Consensus 895 k 895 (1176)
T KOG1248|consen 895 K 895 (1176)
T ss_pred H
Confidence 3
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=90.25 E-value=15 Score=35.87 Aligned_cols=193 Identities=17% Similarity=0.127 Sum_probs=103.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC--CCch
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE--LGVIQMLVSMVSTEVIGRRRAAIKALIQLANG--TYTN 148 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~n 148 (429)
.+...+..|.......|..++..|..+..+... -..+.+ .-.++.+...++.+..+-+..|+.++.-++.. ....
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 477778888877788999999999987755432 222222 23567788888887766666666666555544 2234
Q ss_pred HHHHHhcCccchhhhhccCCC--HHHHHHHHHHHHHhhccCCC-ccccc-cCCcHH--HHHHhhhc-CC--------cHH
Q 014196 149 KAIMVEAGILTKLPKNVDAVD--ESTRHEFGELLLSLSSLANT-HIPLS-SSEILP--FLVGILES-GS--------SVE 213 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~--~~~~~~aa~~L~~Ls~~~~~-~~~i~-~~g~i~--~Lv~lL~~-~~--------~~~ 213 (429)
...+.+ ...|.|..++.... ...|..++.+|.-++..... -..+. -...+. .....++. +. ...
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 555655 46677788877554 34445555455544432211 11110 001122 11111221 11 124
Q ss_pred HHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCCc-chHHHHH---HHHHHhhC
Q 014196 214 TKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSL---ATLGNLVV 267 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~---~~L~~La~ 267 (429)
+...|+.+-.-|... +.....-.-...+|.|..+|...+ .++-.|- ++|+++..
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 566666555545443 322211122457899999998766 6655444 44444444
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=90.05 E-value=7.6 Score=33.12 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=74.4
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc-hHH
Q 014196 28 RRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED-VKI 106 (429)
Q Consensus 28 T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~-~~~ 106 (429)
|...+. .||.+ +|-+-|.... ..+ ......+..+.++|.++++.++..|+..|..+.+.. ...
T Consensus 10 T~~~l~----~~dw~---~ileicD~In-----~~~----~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~f 73 (139)
T cd03567 10 TNPSNR----EEDWE---AIQAFCEQIN-----KEP----EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERF 73 (139)
T ss_pred cCccCC----CCCHH---HHHHHHHHHH-----cCC----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHH
Confidence 444444 48887 5777776431 111 123567889999999999999999999999888743 457
Q ss_pred HHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHhcc
Q 014196 107 KKLMAELGVIQMLVSMVST------EVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 107 r~~i~~~G~i~~Lv~lL~s------~~~~~~~~A~~aL~nLa~ 143 (429)
...+...+++.-|+.++.. .++.+++..+..+...+.
T Consensus 74 h~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 74 HSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 7888888999999999963 468899998888877753
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.5 Score=28.89 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.4
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
+|.+++++.++++ ++|..|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~-~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSP-EVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCH-HHHHHHHHHHHHHHh
Confidence 7899999999987 899999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=89.36 E-value=10 Score=38.20 Aligned_cols=186 Identities=12% Similarity=0.134 Sum_probs=108.9
Q ss_pred HHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCC------------------------------HHHHHHHHHHHHH-
Q 014196 92 AAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEV------------------------------IGRRRAAIKALIQ- 140 (429)
Q Consensus 92 Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~------------------------------~~~~~~A~~aL~n- 140 (429)
|+..|..+....+..-..+.+.||+..+++.|+.+- +--|...+..|.+
T Consensus 4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~ 83 (379)
T PF06025_consen 4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF 83 (379)
T ss_pred HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence 555566666555555667777888888877664210 0112333333333
Q ss_pred ---hcc-CC--CchHHHHHh-cCccchhhhhccCCC---HHHHHHHHHHHHHhhccCCCc-cccccCCcHHHHHHhhh-c
Q 014196 141 ---LAN-GT--YTNKAIMVE-AGILTKLPKNVDAVD---ESTRHEFGELLLSLSSLANTH-IPLSSSEILPFLVGILE-S 208 (429)
Q Consensus 141 ---La~-~~--~~nk~~iv~-~G~i~~Lv~lL~~~~---~~~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~-~ 208 (429)
+.. +. .+.-..+++ ...+..|-.+++... ..+-..|+.++..+-.++... ..+.++|.++.+++-+. .
T Consensus 84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~ 163 (379)
T PF06025_consen 84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK 163 (379)
T ss_pred HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence 233 11 112223444 333444455555443 444555667777776665443 34558999999999888 4
Q ss_pred CC--cHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc--------chHHHHHHHHHHhhC-ChhcHHHHhc
Q 014196 209 GS--SVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE--------RLSEKSLATLGNLVV-TSTGKKAMED 277 (429)
Q Consensus 209 ~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~--------~~~~~a~~~L~~La~-~~e~~~~i~~ 277 (429)
+- +.++....-.+|..||-+....+.+.+.+.++.+++++.+++ +.....-..+.+|.. +|..|..+.+
T Consensus 164 ~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 164 GILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred CCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 42 224555455778888999999999999999999999987642 122222233445555 4666665554
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.21 E-value=11 Score=40.48 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=68.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCcccccc
Q 014196 117 QMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSS 195 (429)
Q Consensus 117 ~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~ 195 (429)
+-++.||.+.-+-++..|+.+|..+...- -+.+. -.+|.|+.-|..+++.++..|+..++.|+.-+ ++--.+
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkY---PeAlr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-- 219 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKY---PEALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-- 219 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhh---hHhHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc--
Confidence 45688899988999999999998876542 22332 35788999999999999999999999999643 444333
Q ss_pred CCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 196 SEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 196 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
-|.+.++|...+..=+.-..+....+|+-
T Consensus 220 ---AP~ffkllttSsNNWmLIKiiKLF~aLtp 248 (877)
T KOG1059|consen 220 ---APLFYKLLVTSSNNWVLIKLLKLFAALTP 248 (877)
T ss_pred ---cHHHHHHHhccCCCeehHHHHHHHhhccc
Confidence 47777777654321112224444445553
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.03 E-value=8.9 Score=43.37 Aligned_cols=228 Identities=15% Similarity=0.120 Sum_probs=127.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHh---hhc-hHHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHhccC---
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLA---KED-VKIKKLMAELGVIQMLVSMVSTEV-IGRRRAAIKALIQLANG--- 144 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La---~~~-~~~r~~i~~~G~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~--- 144 (429)
.+|-+|..+..+...+|..|+..|..+. ++- +.+...+.| =.+|.|-.++.+.+ ..++-.-+..|..||..
T Consensus 463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~e-YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r 541 (1431)
T KOG1240|consen 463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPE-YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR 541 (1431)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHh-hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence 4677888888888889988888887654 222 223333333 34677777777633 33333333333333311
Q ss_pred --------------CCchHHHHHh------cC----ccc-hhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCc
Q 014196 145 --------------TYTNKAIMVE------AG----ILT-KLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEI 198 (429)
Q Consensus 145 --------------~~~nk~~iv~------~G----~i~-~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~ 198 (429)
++.|-+...+ .+ .|. ....++...++-+|+.....|.-||.+- +-+ .+.=.
T Consensus 542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sND~i 618 (1431)
T KOG1240|consen 542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SNDVI 618 (1431)
T ss_pred HHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cccch
Confidence 1111100000 00 111 1223344444445554444555555321 100 02235
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhc
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMED 277 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~ 277 (429)
++.|...|.+.+. .++..=...+..+|..-. .+-++.+.+|.|..-|.|.+ .+..+|+..|..|++..-.++..+-
T Consensus 619 LshLiTfLNDkDw-~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~ 695 (1431)
T KOG1240|consen 619 LSHLITFLNDKDW-RLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK 695 (1431)
T ss_pred HHHHHHHhcCccH-HHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH
Confidence 7899999998875 666544445554444211 23367788999999999986 7899999999999886544443221
Q ss_pred CCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 278 SPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 278 ~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
. +.....-+|- +.+...+..+++++..+..
T Consensus 696 ~--i~~~v~PlL~-hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 696 D--ILQDVLPLLC-HPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred H--HHHhhhhhee-CchHHHHHHHHHHHHHHHh
Confidence 0 1223333555 7888999999999988765
|
|
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.99 E-value=1.3 Score=47.57 Aligned_cols=152 Identities=19% Similarity=0.158 Sum_probs=102.0
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 74 LQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 74 l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
++.+...++.. ..-..-+++.++++|+..+...|..+.+.-+++.+-.++-.+++-.|.+++..+.||..++.-....+
T Consensus 543 ~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si 622 (748)
T KOG4151|consen 543 VKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSI 622 (748)
T ss_pred hhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 44444444432 12334578999999999888888888887667766666777889999999999999998874446667
Q ss_pred Hh-cCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCcc-ccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 153 VE-AGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHI-PLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 153 v~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~-~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
++ ...++....++..........+++++.-+.... +++. ..........++.++.+++. +++...+....|+.
T Consensus 623 ~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~-~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 623 VEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDD-EIQHRGLVIILNLF 698 (748)
T ss_pred hccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchh-hhhhhhhhhhhhHH
Confidence 76 456666666665533444444455555444333 3444 23345567788888988887 78887777777644
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=88.86 E-value=6.7 Score=38.69 Aligned_cols=191 Identities=14% Similarity=0.089 Sum_probs=129.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHH-----HHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKK-----LMAEL--GVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~-----~i~~~--G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
.+..++..|..-+-+.++.++....++.+.....+. .+... .++..|+..-+ ++++--.+-..|+.+..+.
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k~e 154 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIKHE 154 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHhhH
Confidence 467788888888889999988888888776544432 33332 34455555444 4555566667788888774
Q ss_pred CchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc------cCCcHHHHHHhhhcCCcHHHHHHHH
Q 014196 146 YTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS------SSEILPFLVGILESGSSVETKELCI 219 (429)
Q Consensus 146 ~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~------~~g~i~~Lv~lL~~~~~~~~~~~A~ 219 (429)
.....|.....+..+...++.+.-++-..|..++..+-. .++...+ -...+.....+|.+++. -+++.++
T Consensus 155 -~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt--~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY-vtkrqsl 230 (335)
T PF08569_consen 155 -SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLT--RHKKLVAEFLSNNYDRFFQKYNKLLESSNY-VTKRQSL 230 (335)
T ss_dssp -HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHH--SSHHHHHHHHHHTHHHHHHHHHHHCT-SSH-HHHHHHH
T ss_pred -HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHccCCCe-EeehhhH
Confidence 456677788888889999988887777777777776532 2332222 13456788889999998 6899999
Q ss_pred HHHHHhccCCCChhHHH----hcCcHHHHHHhccCCc-chHHHHHHHHHHhhCCh
Q 014196 220 GALYNLSAVLDNARPMV----SNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTS 269 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv----~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~ 269 (429)
..|..|-....|...|. +..-+..++.+|+|.+ .++-.|.-+.--.+.+|
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 99999999888865443 3466778888999886 78888888876555443
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.83 E-value=4.8 Score=41.65 Aligned_cols=151 Identities=17% Similarity=0.102 Sum_probs=102.5
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-----chHHHHHHHHHHhhCChhcHH
Q 014196 199 LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-----RLSEKSLATLGNLVVTSTGKK 273 (429)
Q Consensus 199 i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-----~~~~~a~~~L~~La~~~e~~~ 273 (429)
...+.+++.+++. ..+..|+..|..++........++...++..|..++.|.+ .+...++.++..+-.+.-..-
T Consensus 85 a~~i~e~l~~~~~-~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNN-ISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCc-HHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4567788888887 6777788999999988888888999999999999988753 333444444444332211111
Q ss_pred HHhcCCCChHHHHHhccc-CCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 274 AMEDSPLVPESLIEILTW-EEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 274 ~i~~~~~i~~~Lv~~L~~-~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
..+....+. ..+.+... .-...+-..|+..|-.+..++...++.+.++--+..|+..++.++...+..|-.++..+-
T Consensus 164 ~~~~~~fV~-~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVV-SMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHH-HHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 111112222 23333321 123345677888888888778888999999999999999999999998888887765443
|
|
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=88.42 E-value=21 Score=36.64 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=82.8
Q ss_pred CccccccCCcHHHHHHhhhcCCc------HHHHHHHHHHHHHhccCCCC--hhHHHhcCcHHHHHHhccCC---c-----
Q 014196 189 THIPLSSSEILPFLVGILESGSS------VETKELCIGALYNLSAVLDN--ARPMVSNGVVHTLLKLCSMK---E----- 252 (429)
Q Consensus 189 ~~~~i~~~g~i~~Lv~lL~~~~~------~~~~~~A~~aL~nLs~~~~n--~~~iv~~G~v~~Lv~lL~~~---~----- 252 (429)
++..+-++-+.+++-++|.+++. .-.+.-++..|.-.|..++- ...|+ ..||.|++.+... +
T Consensus 48 ~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~ 125 (698)
T KOG2611|consen 48 NKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNL 125 (698)
T ss_pred hhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhH
Confidence 55556677778999999986421 23456677788888887763 35565 4789999998632 1
Q ss_pred chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 253 RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 253 ~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
.+.+.+-.+|..++.++.|.......|+++ .+.++-.-.+-...+..|..++.-..
T Consensus 126 ~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~-~~~Q~y~~~~~~~d~alal~Vlll~~ 181 (698)
T KOG2611|consen 126 IMLEDCYECLYLVATAEAGLMTLIASGGLR-VIAQMYELPDGSHDMALALKVLLLLV 181 (698)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHhcCchH-HHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 478999999999999999999999988885 77776442343444555655555443
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.19 E-value=24 Score=33.43 Aligned_cols=199 Identities=16% Similarity=0.110 Sum_probs=108.5
Q ss_pred hcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC-
Q 014196 112 ELGVIQMLVSMVSTE--VIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN- 188 (429)
Q Consensus 112 ~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~- 188 (429)
...++|.|+..|... .+.++..|..+|.++. +. .... .+-+..+.+..++++.+-.++..+-..+.
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~-~~~~---------~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP-ESLE---------ILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch-hhHH---------HHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 356799999998765 4788999999999887 33 2222 22333444444455544444444432211
Q ss_pred -----Cccccc-------cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chH
Q 014196 189 -----THIPLS-------SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLS 255 (429)
Q Consensus 189 -----~~~~i~-------~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~ 255 (429)
..+.+. ..+-+.-|-..|.+.+.+-..+. .+++.|-... -..+|..+++-+.+.+ -++
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry--~amF~LRn~g-------~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY--RAMFYLRNIG-------TEEAINALIDGLADDSALFR 204 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH--hhhhHhhccC-------cHHHHHHHHHhcccchHHHH
Confidence 111111 22335555555544433222222 3333332211 0134556666666555 566
Q ss_pred HHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhccc-CCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc
Q 014196 256 EKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTW-EEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL 334 (429)
Q Consensus 256 ~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~-~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~ 334 (429)
..++.+++.|-. ...++.|.+.|.. ...+-++-.|+.+|+.++. ++. ++.|.+.+.+
T Consensus 205 hEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~~---------~~vL~e~~~D 262 (289)
T KOG0567|consen 205 HEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--EDC---------VEVLKEYLGD 262 (289)
T ss_pred HHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HHH---------HHHHHHHcCC
Confidence 677777776532 2233478887762 2566778888889988763 444 3445555555
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 014196 335 GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 335 ~~~~~k~~A~~lL~~l~~ 352 (429)
..+-+++.+.-.|.++-.
T Consensus 263 ~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 263 EERVVRESCEVALDMLEY 280 (289)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 556666666666766553
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.94 E-value=5.6 Score=44.87 Aligned_cols=254 Identities=15% Similarity=0.089 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHhhhc-hHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc---CCCchHHHHHhcCccchh
Q 014196 86 WEEKEMAAKEIEKLAKED-VKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLAN---GTYTNKAIMVEAGILTKL 161 (429)
Q Consensus 86 ~~~~~~Aa~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~---~~~~nk~~iv~~G~i~~L 161 (429)
.+.|.+|+.-|+.++... .+++ =.-++|-+|.++.++...+|..|+.+|..+-. +-..+-..|.-.=.+|-|
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 678889999999888632 2222 12458999999999999999999888877632 111122334434456777
Q ss_pred hhhccCC-CHHHHHHHHHHHHHhhccC------------------CCc---cccccCCcHHHH--------HHhhhcCCc
Q 014196 162 PKNVDAV-DESTRHEFGELLLSLSSLA------------------NTH---IPLSSSEILPFL--------VGILESGSS 211 (429)
Q Consensus 162 v~lL~~~-~~~~~~~aa~~L~~Ls~~~------------------~~~---~~i~~~g~i~~L--------v~lL~~~~~ 211 (429)
-.++.+. ...+|...|..|..|+... .+. ..-........| +.+|...++
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 7777653 3334444444444444210 000 000000001111 111111111
Q ss_pred HHHHHHHHHHHHHhccCCCChhHHHh-cCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHH-hcCCCChHHHHHhc
Q 014196 212 VETKELCIGALYNLSAVLDNARPMVS-NGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAM-EDSPLVPESLIEIL 289 (429)
Q Consensus 212 ~~~~~~A~~aL~nLs~~~~n~~~iv~-~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i-~~~~~i~~~Lv~~L 289 (429)
-+|+.-+..|.-||..= .+.-. .=.++.|+..|.|.+...+. +....++.-.-.-.-- ++ ..+.|.|.+-|
T Consensus 593 -~Vkr~Lle~i~~LC~FF---Gk~ksND~iLshLiTfLNDkDw~LR~--aFfdsI~gvsi~VG~rs~s-eyllPLl~Q~l 665 (1431)
T KOG1240|consen 593 -IVKRALLESIIPLCVFF---GKEKSNDVILSHLITFLNDKDWRLRG--AFFDSIVGVSIFVGWRSVS-EYLLPLLQQGL 665 (1431)
T ss_pred -HHHHHHHHHHHHHHHHh---hhcccccchHHHHHHHhcCccHHHHH--HHHhhccceEEEEeeeeHH-HHHHHHHHHhc
Confidence 23333333333333210 00001 12234444444444311111 1122222211000001 12 33444666666
Q ss_pred ccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 290 TWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 290 ~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
. ++.+.+-..|+++|..||.. ..-+...--.++.-..-++-..+.=++..++.++--..+.
T Consensus 666 t-D~EE~Viv~aL~~ls~Lik~--~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 666 T-DGEEAVIVSALGSLSILIKL--GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred c-CcchhhHHHHHHHHHHHHHh--cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 6 67777778888888877753 2444433333333334444556777888888888887764
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=87.44 E-value=4.1 Score=34.88 Aligned_cols=74 Identities=15% Similarity=0.065 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhcc
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~ 143 (429)
....+..+.++|.++++.++..|+..|..+.+. .......+...+.+..|+.++.. .++.+++.++..+...+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 467799999999999999999999999999886 35577888889999999999974 678899999998888764
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.19 E-value=15 Score=41.19 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=88.6
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCcc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHI 191 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~ 191 (429)
.++++.|.+.|++.|..++-.|+..++.++...+ .. +++ .+|...+.++...+ ...=..++.+|..|+...-..+
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~-Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PE-LAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HH-HHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 3678889999999999999999999999998874 22 222 23334455555444 3334456678888874331111
Q ss_pred ccccCCcHHHHHHhhhc-------CCcHHHHHHHHHHHHHhccCCC--ChhHHHhcCcHHH-HHHhccCCc-chHHHHHH
Q 014196 192 PLSSSEILPFLVGILES-------GSSVETKELCIGALYNLSAVLD--NARPMVSNGVVHT-LLKLCSMKE-RLSEKSLA 260 (429)
Q Consensus 192 ~i~~~g~i~~Lv~lL~~-------~~~~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~-Lv~lL~~~~-~~~~~a~~ 260 (429)
.. -...+|.+++-|.- .....++..|+-+.|.++..-+ ....++.. ..+. |...+-|++ ..++.|.+
T Consensus 416 s~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHHH
Confidence 10 12345555554431 1112478888888888886432 22333322 2222 333456777 77888888
Q ss_pred HHHHhhC
Q 014196 261 TLGNLVV 267 (429)
Q Consensus 261 ~L~~La~ 267 (429)
++.+..+
T Consensus 494 AlqE~VG 500 (1133)
T KOG1943|consen 494 ALQENVG 500 (1133)
T ss_pred HHHHHhc
Confidence 8876654
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.12 E-value=40 Score=40.82 Aligned_cols=182 Identities=17% Similarity=0.199 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHH-HHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHH-HhccCCCChhHHHhcCcHHHHH
Q 014196 168 VDESTRHEFGELL-LSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALY-NLSAVLDNARPMVSNGVVHTLL 245 (429)
Q Consensus 168 ~~~~~~~~aa~~L-~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~-nLs~~~~n~~~iv~~G~v~~Lv 245 (429)
++...-..++.+| ..|..+++.+..+.-.|.-..|-.+-+-++...++ .|+.+|. .|..+.+-+..+ +.-.|..++
T Consensus 344 pd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~-~aa~~LA~~l~~d~~l~~~~-~~Q~van~l 421 (2710)
T PRK14707 344 PDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCA-AAASALAEHVVDDLELRKGL-DPQGVSNAL 421 (2710)
T ss_pred CCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHH-HHHHHHHHHhccChhhhhhc-chhhHHHHH
Confidence 3333444444433 34554445555553333323333333334443344 3444444 455444444444 444455555
Q ss_pred Hhcc-CCc-chHHHHHHHHH-HhhCChhcHHHHhcCCCChHHHHHhc-ccCCChhHHHHHHHHHHHHhhCCHHHHHHHHh
Q 014196 246 KLCS-MKE-RLSEKSLATLG-NLVVTSTGKKAMEDSPLVPESLIEIL-TWEEKPKCQELSAYILMILAHQSSEQRDKMAK 321 (429)
Q Consensus 246 ~lL~-~~~-~~~~~a~~~L~-~La~~~e~~~~i~~~~~i~~~Lv~~L-~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~ 321 (429)
.-|+ -++ .+...++..|. .++...+.++++--.+ +. ..+..+ .|.+++.+.+.+-.....|++ +++.++.+--
T Consensus 422 nalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va-~~LnalSKWPd~p~c~~aa~~La~~l~~-~~~l~~a~~~ 498 (2710)
T PRK14707 422 NALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VT-QALDALSKWPDTPICGQTASALAARLAH-ERRLRKALKP 498 (2710)
T ss_pred HHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HH-HHHHHhhcCCCChhHHHHHHHHHHHhcc-cHHHHhhcCH
Confidence 5554 455 77788888886 7778888888886543 33 344433 567888887776666666664 4667777766
Q ss_pred CCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhcc
Q 014196 322 SGIVHVSLQLALLG-SPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 322 ~G~v~~L~~ll~~~-~~~~k~~A~~lL~~l~~~~ 354 (429)
.++...|-.|.+-. .+...+.+.|+-+.+...+
T Consensus 499 q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~ 532 (2710)
T PRK14707 499 QEVVIALHSLSKWPDTPICAEAASALAERVVDEL 532 (2710)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch
Confidence 67666666666654 3455566667766666543
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.00 E-value=59 Score=36.69 Aligned_cols=240 Identities=16% Similarity=0.097 Sum_probs=133.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
..+..|+..|.+.+..++-.||+-+..++.+.|. .+++ -+|...++++.- ++...-..|+.+|..|+...= -.-
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl-Llp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGL-LLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC-cch
Confidence 4556677777777888889999999999998872 2332 235566665543 346677788888888876531 111
Q ss_pred HHHhcCccchhhhhccC--------CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhh-----hcCCcHHHHHH
Q 014196 151 IMVEAGILTKLPKNVDA--------VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGIL-----ESGSSVETKEL 217 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~--------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL-----~~~~~~~~~~~ 217 (429)
...+ ..+|.+++-+.- ....+|..|+-++|.++..-.... + .+.+..|...| -+.+- .+++.
T Consensus 416 s~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~-l--~p~l~~L~s~LL~~AlFDrev-ncRRA 490 (1133)
T KOG1943|consen 416 SLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD-L--KPVLQSLASALLIVALFDREV-NCRRA 490 (1133)
T ss_pred HHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh-h--hHHHHHHHHHHHHHHhcCchh-hHhHH
Confidence 1111 233334333321 113455566668888875432211 1 11222222211 12233 58888
Q ss_pred HHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC---c-chHHHHHHHHH-HhhCChhcHHHHhcCCCChHHHHHhcccC
Q 014196 218 CIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK---E-RLSEKSLATLG-NLVVTSTGKKAMEDSPLVPESLIEILTWE 292 (429)
Q Consensus 218 A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~---~-~~~~~a~~~L~-~La~~~e~~~~i~~~~~i~~~Lv~~L~~~ 292 (429)
|..|+........|. |.=++++..- . ..+.+|-..|. -++..+..+.-+.++ .+.+-+. +
T Consensus 491 AsAAlqE~VGR~~n~---------p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~-----L~t~Kv~-H 555 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNF---------PHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH-----LLTKKVC-H 555 (1133)
T ss_pred HHHHHHHHhccCCCC---------CCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH-----HHhcccc-c
Confidence 888887655433333 2222233211 1 33444443333 555566666666652 2222233 4
Q ss_pred CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHH
Q 014196 293 EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQ 340 (429)
Q Consensus 293 ~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k 340 (429)
=+...+|.+..+|..|+...+ .-...+.+|+|+.-...++...+
T Consensus 556 Wd~~irelaa~aL~~Ls~~~p----k~~a~~~L~~lld~~ls~~~~~r 599 (1133)
T KOG1943|consen 556 WDVKIRELAAYALHKLSLTEP----KYLADYVLPPLLDSTLSKDASMR 599 (1133)
T ss_pred ccHHHHHHHHHHHHHHHHhhH----HhhcccchhhhhhhhcCCChHHh
Confidence 477899999999999875433 33445678888888777765443
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=86.63 E-value=0.99 Score=37.31 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=53.2
Q ss_pred hHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 282 PESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 282 ~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
+..|+++|..+.++....-|+.=|+.++..-|..+..+-+.|+-..+.+++.+.++.+|..|...++.+-
T Consensus 45 lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3478888853345555666777777888766788888888899999999999999999999998877654
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.54 E-value=40 Score=37.01 Aligned_cols=175 Identities=14% Similarity=0.098 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 70 DCVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
-...++..++.|... .+.++..++..+..+++--+ ...+..+.++.++++..++...+++.|...+.++..--+
T Consensus 234 vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~-- 308 (759)
T KOG0211|consen 234 VKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD-- 308 (759)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC--
Confidence 345567777777755 67888889998998887443 377778999999999998888999999888877753321
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
...=+..-..+.++...+.+....+...+...+.|+..-. ...+...-+++...+++.... +.+..+..-...++..
T Consensus 309 ~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~~l~~~~~~-e~r~a~a~~~~~l~~~ 385 (759)
T KOG0211|consen 309 DDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG--PSATRTQLVPPVSNLLKDEEW-EVRYAIAKKVQKLACY 385 (759)
T ss_pred CchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc--cccCcccchhhHHHHhcchhh-hhhHHhhcchHHHhhh
Confidence 1101223455667777777777777777777777764321 133334456777777665443 3333333333333332
Q ss_pred --CCChhHHHhcCcHHHHHHhccCCc
Q 014196 229 --LDNARPMVSNGVVHTLLKLCSMKE 252 (429)
Q Consensus 229 --~~n~~~iv~~G~v~~Lv~lL~~~~ 252 (429)
.+....+...-++|.+-.+..+..
T Consensus 386 l~~~~~~~i~~~~ilp~~~~lv~d~~ 411 (759)
T KOG0211|consen 386 LNASCYPNIPDSSILPEVQVLVLDNA 411 (759)
T ss_pred cCcccccccchhhhhHHHHHHHhccc
Confidence 222344444555666666666654
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=85.22 E-value=13 Score=32.95 Aligned_cols=68 Identities=18% Similarity=0.099 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcH-HHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVI-QMLVSMVSTEVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i-~~Lv~lL~s~~~~~~~~A~~aL~nLa~~ 144 (429)
..++.+...|.++++.+|..|+..|..|...+. +--.|-+ ..++.+|.++|++++..|..++..+...
T Consensus 25 ~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 25 PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 357889999999999999999999999886542 1112333 6778899999999999999999999877
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.10 E-value=0.97 Score=45.83 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=82.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccC--C-Cch----HHHHHhcCccchhhhhccC---CCHHHHHHHHHHHHHhhc
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANG--T-YTN----KAIMVEAGILTKLPKNVDA---VDESTRHEFGELLLSLSS 185 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~-~~n----k~~iv~~G~i~~Lv~lL~~---~~~~~~~~aa~~L~~Ls~ 185 (429)
.......|.+.....|+.++|++.|++.. + -.+ ...+. .-.+..+...-.. ....++.++..+|.|+..
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 44455556665677899999999998521 0 011 11111 1112222222111 124567778888888875
Q ss_pred cCCCcccc--c--cCCcHHHHHHhh-hcCCcHHHHHHHHHHHHHhccCCCCh-hHHH-hcCcHHHHHHhccCCc--chHH
Q 014196 186 LANTHIPL--S--SSEILPFLVGIL-ESGSSVETKELCIGALYNLSAVLDNA-RPMV-SNGVVHTLLKLCSMKE--RLSE 256 (429)
Q Consensus 186 ~~~~~~~i--~--~~g~i~~Lv~lL-~~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv-~~G~v~~Lv~lL~~~~--~~~~ 256 (429)
.-+.-... + ..|.+..+..-. ..+.. +++-+||-++.||-+++.-. ..+- ..-+++.|..++.+.. +++-
T Consensus 514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~-kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi 592 (728)
T KOG4535|consen 514 FLQPIEKPTFAEIIEESIQALISTVLTEAAM-KVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI 592 (728)
T ss_pred HHHHhhhccHHHHHHHHHHhcccceeccccc-ccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Confidence 43211111 1 122222222221 12333 68999999999999887653 2222 2346788888888764 8888
Q ss_pred HHHHHHHHhhC
Q 014196 257 KSLATLGNLVV 267 (429)
Q Consensus 257 ~a~~~L~~La~ 267 (429)
+|+++|..-..
T Consensus 593 ~AA~aL~vp~~ 603 (728)
T KOG4535|consen 593 RAAAALSVPGK 603 (728)
T ss_pred hhhhhhcCCCC
Confidence 88888865444
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.60 E-value=3 Score=41.68 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=32.8
Q ss_pred CCcchhhhhhhhHH--HHHHHHh-ccc-cccCCCCCCCcccchh
Q 014196 3 IPSSSYMRLQFFSR--IRQFIQS-KSA-RRRQNEPNHNHEKSRT 42 (429)
Q Consensus 3 ~~~~~~~~~~TydR--Ie~W~~~-g~~-~T~~~L~~~~L~PN~~ 42 (429)
+|+-|---|.-||| ||+++.+ |++ +|++||.--+|+|=.+
T Consensus 12 ~PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~ 55 (506)
T KOG0289|consen 12 EPVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKV 55 (506)
T ss_pred CccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccc
Confidence 57777777899999 9999965 666 9999998778887555
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.48 E-value=67 Score=37.67 Aligned_cols=306 Identities=15% Similarity=0.115 Sum_probs=151.2
Q ss_pred CHHHHHHHHHHHHHHhhhch-HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHh---cCccch
Q 014196 85 SWEEKEMAAKEIEKLAKEDV-KIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVE---AGILTK 160 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~---~G~i~~ 160 (429)
.+..|+.||+-+..+++... +.+..+.+ .||.|.+.=.++|+.+|.+ ..-++|.-..+. ..+++ ...++-
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~k--LIPrLyRY~yDP~~~Vq~a-M~sIW~~Li~D~---k~~vd~y~neIl~e 1043 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKK--LIPRLYRYQYDPDKKVQDA-MTSIWNALITDS---KKVVDEYLNEILDE 1043 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHH--hhHHHhhhccCCcHHHHHH-HHHHHHHhccCh---HHHHHHHHHHHHHH
Confidence 57888999999999887542 22223322 4888888878888888775 455566544432 22222 233333
Q ss_pred hhhhccCCCHHHHHHHHHHHHHhhccCCCcccccc-CCcHHHHHHhhhcCCcHHHHH---HHHHHHHHhccC---CCCh-
Q 014196 161 LPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSS-SEILPFLVGILESGSSVETKE---LCIGALYNLSAV---LDNA- 232 (429)
Q Consensus 161 Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~---~A~~aL~nLs~~---~~n~- 232 (429)
|+.-+.+....+|+.++.+|..|-...+.....-. ......+.+...+=. +.+|+ -++.+|..||.. ..|-
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIK-EsVR~aa~~~~~~lsKl~vr~~d~~~~~ 1122 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIK-ESVREAADKAARALSKLCVRICDVTNGA 1122 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhcccCCcc
Confidence 44444444577888888899998754433221111 112222333332211 12333 456677776642 2221
Q ss_pred -hHHHhcCcHHHHHH--hccCCcchHHHHHHHHHHhhCChhcHHHHh-cCCCChHHHHHhcccCCCh-----------hH
Q 014196 233 -RPMVSNGVVHTLLK--LCSMKERLSEKSLATLGNLVVTSTGKKAME-DSPLVPESLIEILTWEEKP-----------KC 297 (429)
Q Consensus 233 -~~iv~~G~v~~Lv~--lL~~~~~~~~~a~~~L~~La~~~e~~~~i~-~~~~i~~~Lv~~L~~~~s~-----------~~ 297 (429)
..-+-+-++|.|++ .+++-.++++-++.++..|+++... ++. -.+.++|.|++... .-.+ ..
T Consensus 1123 ~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~--~lkP~~~~LIp~ll~~~s-~lE~~vLnYls~r~~~~ 1199 (1702)
T KOG0915|consen 1123 KGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK--ELKPHFPKLIPLLLNAYS-ELEPQVLNYLSLRLINI 1199 (1702)
T ss_pred cHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchh--hhcchhhHHHHHHHHHcc-ccchHHHHHHHHhhhhh
Confidence 11122344555554 3322238888999999999985322 111 11223334554443 1111 11
Q ss_pred HHHHHHHHH-HHhhCCH--HHHHHH-------HhCCchHHHHHHhhcC-CHHHHHHHHHHHHHHH-hccccCCCCCCCCC
Q 014196 298 QELSAYILM-ILAHQSS--EQRDKM-------AKSGIVHVSLQLALLG-SPLAQRRASKLLQWFK-DERQAKMGPHSGPQ 365 (429)
Q Consensus 298 ~e~A~~~L~-~L~~~~~--~~~~~i-------~~~G~v~~L~~ll~~~-~~~~k~~A~~lL~~l~-~~~~~~~~~~~~~~ 365 (429)
...|+..+. +.+..++ +..... +-+..+|.++++++.+ .-.+|-.++..+..|. +.+ .++ .|.
T Consensus 1200 e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~----~em-tP~ 1274 (1702)
T KOG0915|consen 1200 ETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLG----SEM-TPY 1274 (1702)
T ss_pred HHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhc----ccc-Ccc
Confidence 222333332 1122232 111111 1124789999999876 4455666665544444 222 122 344
Q ss_pred cccc----ccCCCC-ChhhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014196 366 TRRV----SIGSPV-SPREAQEGKKMMKNLVQQSLHKNLEMITRR 405 (429)
Q Consensus 366 ~~~~----~~~~~~-~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~ 405 (429)
++.. -.+..+ ++-.+.-..-||--+++-+-+..++.+++.
T Consensus 1275 sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~ 1319 (1702)
T KOG0915|consen 1275 SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIET 1319 (1702)
T ss_pred hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4421 112222 444444455566666665555555555554
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=84.46 E-value=8 Score=32.59 Aligned_cols=75 Identities=16% Similarity=0.142 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchH-HHHHHHhcCcHHHHHHhhcC---CCHHHHHHHHHHHHHhccC
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVK-IKKLMAELGVIQMLVSMVST---EVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s---~~~~~~~~A~~aL~nLa~~ 144 (429)
....++.+-++|+++++.++..|+..|..+.+.... ....+.....+..|+.++.. .++.++..++..+.+.+..
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999886644 67777777778889999975 4788999999998887644
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=84.13 E-value=20 Score=35.35 Aligned_cols=203 Identities=14% Similarity=0.115 Sum_probs=133.8
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCcc--c---cc-c-CCcHHHHHHhhhcCCcHHHHHHHHH
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHI--P---LS-S-SEILPFLVGILESGSSVETKELCIG 220 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~--~---i~-~-~g~i~~Lv~lL~~~~~~~~~~~A~~ 220 (429)
...+...|.+..|+..|...+-+.|..++.+..++-... +.+. . +. . ...+..|+.--.+. ++--.+-.
T Consensus 69 a~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~---dial~~g~ 145 (335)
T PF08569_consen 69 AQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP---DIALNCGD 145 (335)
T ss_dssp HHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST---TTHHHHHH
T ss_pred HHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc---cccchHHH
Confidence 345666788888999999999999999888877776443 2222 1 11 2 23333333333333 23344556
Q ss_pred HHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHH-hhCChhcHHHHhcC--CCChHHHHHhcccCCChh
Q 014196 221 ALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGN-LVVTSTGKKAMEDS--PLVPESLIEILTWEEKPK 296 (429)
Q Consensus 221 aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~-La~~~e~~~~i~~~--~~i~~~Lv~~L~~~~s~~ 296 (429)
.|.....++.-...+.....+-.+.+.+..+. ++...|..++.. |..+......+... .........+|. +++-.
T Consensus 146 mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~-s~NYv 224 (335)
T PF08569_consen 146 MLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE-SSNYV 224 (335)
T ss_dssp HHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT--SSHH
T ss_pred HHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc-CCCeE
Confidence 66666667666678888888888989888777 999999999985 55566655555432 233335667777 78999
Q ss_pred HHHHHHHHHHHHhhC--CHHHHHHHHhC-CchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Q 014196 297 CQELSAYILMILAHQ--SSEQRDKMAKS-GIVHVSLQLALLGSPLAQRRASKLLQWFKDERQ 355 (429)
Q Consensus 297 ~~e~A~~~L~~L~~~--~~~~~~~i~~~-G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 355 (429)
++..++..|..+-.. +...+..-+.. .-+..++.++++.+..+|-.|-.+.+.+-..|+
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 999999999988753 22333334432 346677788888899999999999999998665
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.42 E-value=4.2 Score=37.40 Aligned_cols=99 Identities=21% Similarity=0.150 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCC----hhHHHHHHHHHHHHhhC-CHHHHHHHHhCCchHH
Q 014196 253 RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEK----PKCQELSAYILMILAHQ-SSEQRDKMAKSGIVHV 327 (429)
Q Consensus 253 ~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s----~~~~e~A~~~L~~L~~~-~~~~~~~i~~~G~v~~ 327 (429)
.-+-.++.+|.-++.+|+.+..++++ .++--|-.+|...++ +-.+-.+.+++..+... ++.+..-+..-.+||.
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 34557788888999999999999885 344345556652222 23456788888888875 5677777888899999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 328 SLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 328 L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
++.++..|++..|.-|..+++.+-.
T Consensus 194 cLrIme~gSElSktvaifI~qkil~ 218 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKILG 218 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 9999999999999999998876653
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=83.40 E-value=8.7 Score=32.98 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=76.5
Q ss_pred ccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch-HH
Q 014196 28 RRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV-KI 106 (429)
Q Consensus 28 T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~~ 106 (429)
|-..+.. ||.. +|-+-|.... .. .......+..+.++|.+.++.++..|+..|..+.+... ..
T Consensus 9 Tse~l~~----~dw~---~il~icD~I~-----~~----~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~f 72 (144)
T cd03568 9 TDEKLTS----ENWG---LILDVCDKVK-----SD----ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRF 72 (144)
T ss_pred cCccCCC----cCHH---HHHHHHHHHh-----cC----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 4444443 6765 5777776431 11 11246778999999999999999999999999987543 46
Q ss_pred HHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccC
Q 014196 107 KKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 107 r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~ 144 (429)
...+....++..|+.++.. .++.+++..+..+..++..
T Consensus 73 h~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 73 HQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 7788888999999999988 7889999999998888643
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.29 E-value=65 Score=34.63 Aligned_cols=296 Identities=13% Similarity=0.113 Sum_probs=156.6
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCC------------hhhHHHHHHHHHHhcCCCHHHHHHHHH
Q 014196 27 RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIE------------EDDCVLLQKSVKRLHFGSWEEKEMAAK 94 (429)
Q Consensus 27 ~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~------------~~~~~~l~~lv~~L~~~~~~~~~~Aa~ 94 (429)
.|.-.+.++.++| +..|...|........-++. ... ..+...+-.++..|...+.+.|.+=-.
T Consensus 202 ~~~~~~~~~~~ip----k~~~~~~~k~~~~~~~~r~n-~~~~~~~~~~~~gff~n~fvd~~~fLeel~lks~~eK~~Ff~ 276 (690)
T KOG1243|consen 202 LTKTDLSNTGKIP----KALIELYCKKLGATELKRPN-KLRFILECRLLGGFFRNDFVDTLLFLEELRLKSVEEKQKFFS 276 (690)
T ss_pred CcchhhhccCccc----hhHHHHHHHHhccccccccc-hhhHHHHHHhccccccchHHHHHHHHHhcccCcHHHHHHHHH
Confidence 5677788888999 66677777654221111111 000 011222334444444445555544333
Q ss_pred HHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHH
Q 014196 95 EIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRH 174 (429)
Q Consensus 95 ~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~ 174 (429)
.|.... +..-..++..-.+|.|+..+..++ .-...+..|..+...-+ ... .+.+.+|.|+++....+..+|-
T Consensus 277 ~L~~~l---~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld-~~e--yq~~i~p~l~kLF~~~Dr~iR~ 348 (690)
T KOG1243|consen 277 GLIDRL---DNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLD-EEE--YQVRIIPVLLKLFKSPDRQIRL 348 (690)
T ss_pred HHHHHH---hhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhcc-ccc--cccchhhhHHHHhcCcchHHHH
Confidence 333211 112223444445666666666555 11222333333333221 111 5567899999999888766654
Q ss_pred HHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCCc
Q 014196 175 EFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMKE 252 (429)
Q Consensus 175 ~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~ 252 (429)
. +|.++-..- .....+.+...+|.+..-+.+.++ .+++..+.++.-|+.. ..+ .+....+..+-.+-.|..
T Consensus 349 ~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~-~Lre~Tlksm~~La~kL~~~---~Ln~Ellr~~ar~q~d~~ 421 (690)
T KOG1243|consen 349 L---LLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNA-TLREQTLKSMAVLAPKLSKR---NLNGELLRYLARLQPDEH 421 (690)
T ss_pred H---HHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCH-HHHHHHHHHHHHHHhhhchh---hhcHHHHHHHHhhCcccc
Confidence 3 333333221 223445567788999988888877 7899898888877642 222 222233333333333332
Q ss_pred -chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHH
Q 014196 253 -RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQL 331 (429)
Q Consensus 253 -~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~l 331 (429)
+++-+..-+|..++... .+.++.+..+.+....+. +.-...+..++.+++..+..- .+.. +...++|.++-+
T Consensus 422 ~~irtntticlgki~~~l---~~~~R~~vL~~aftralk-dpf~paR~a~v~~l~at~~~~-~~~~--va~kIlp~l~pl 494 (690)
T KOG1243|consen 422 GGIRTNTTICLGKIAPHL---AASVRKRVLASAFTRALK-DPFVPARKAGVLALAATQEYF-DQSE--VANKILPSLVPL 494 (690)
T ss_pred Ccccccceeeeccccccc---chhhhccccchhhhhhhc-CCCCCchhhhhHHHhhccccc-chhh--hhhhcccccccc
Confidence 66666665666655431 122243444434555555 455667888888887665431 1211 222467888888
Q ss_pred hhcCCHHHHHHHHHHHHH
Q 014196 332 ALLGSPLAQRRASKLLQW 349 (429)
Q Consensus 332 l~~~~~~~k~~A~~lL~~ 349 (429)
..+.+..++..|-..++.
T Consensus 495 ~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 495 TVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ccCcccchhhHHHHHHHH
Confidence 877777777777764433
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=83.06 E-value=4.1 Score=32.12 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 145 (429)
..+...+..|.++.+..|..++..|+.+..... ...+...+++..+...|+++|+-+--+|+..|..|+...
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 457788888999888999999999999987553 112222466778888999999999999999999998665
|
|
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=82.61 E-value=45 Score=31.68 Aligned_cols=66 Identities=29% Similarity=0.438 Sum_probs=48.4
Q ss_pred CcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhh
Q 014196 197 EILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLV 266 (429)
Q Consensus 197 g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La 266 (429)
..+-.|.++|.++.. -.+...+..|+.+-.+-+.... ...+.+.+++++|.. +....|+.+|.+..
T Consensus 188 ~~l~~Ll~lL~n~~~-w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t--~~~~eAL~VLd~~v 253 (262)
T PF14225_consen 188 QILTFLLGLLENGPP-WLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQT--DLWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHHhCCcH-HHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCC--ccHHHHHHHHHHHH
Confidence 345667888888776 6888888888888776554444 556789999999965 57778888886544
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=82.31 E-value=6.2 Score=29.62 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCC
Q 014196 255 SEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSG 323 (429)
Q Consensus 255 ~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G 323 (429)
.+.|+.++.+++.++.|...+.+.+ +++.++++...++....|--|.++|.-++. +.+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~-iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESD-IVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcC-HHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 4678899999999999998888654 556999998756777888899999988875 466676666655
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.14 E-value=19 Score=40.65 Aligned_cols=182 Identities=18% Similarity=0.205 Sum_probs=94.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhch-HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-----CCCchH
Q 014196 76 KSVKRLHFGSWEEKEMAAKEIEKLAKEDV-KIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLAN-----GTYTNK 149 (429)
Q Consensus 76 ~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~-----~~~~nk 149 (429)
.+....++.+...+..++..|..+-+..+ ++...+... ||-++-+++..|...++.|..+|.++.. ++..++
T Consensus 701 ~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~--I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~ 778 (1176)
T KOG1248|consen 701 SLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL--IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP 778 (1176)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH--HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc
Confidence 33444444455666677777777665443 343333332 4444444487888889988888887762 111112
Q ss_pred -HHHHhcCccchhhhhccCC--CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhh----hcCCcHHHHHHHHHHH
Q 014196 150 -AIMVEAGILTKLPKNVDAV--DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGIL----ESGSSVETKELCIGAL 222 (429)
Q Consensus 150 -~~iv~~G~i~~Lv~lL~~~--~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~~A~~aL 222 (429)
.. .|...+..|..+ ..+.+..+.. |..+...-.....+.+.+.++.++.++ .+++. ++...|++.+
T Consensus 779 ~~~-----~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sr-eI~kaAI~fi 851 (1176)
T KOG1248|consen 779 ASA-----ILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSR-EIAKAAIGFI 851 (1176)
T ss_pred hHH-----HHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Confidence 11 333344444333 2233322322 222221111222233444555555544 44554 7888888888
Q ss_pred HHhcc-CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhh
Q 014196 223 YNLSA-VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLV 266 (429)
Q Consensus 223 ~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La 266 (429)
.-++. .++-+..-.....+|.++.++.+.. .++.+.-..|..|+
T Consensus 852 kvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 852 KVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred HHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 87765 4544433333456777777777654 45555555555554
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.09 E-value=2.1 Score=39.72 Aligned_cols=124 Identities=16% Similarity=0.100 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhccCCC------chHHHHHh----------cCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcc
Q 014196 128 IGRRRAAIKALIQLANGTY------TNKAIMVE----------AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHI 191 (429)
Q Consensus 128 ~~~~~~A~~aL~nLa~~~~------~nk~~iv~----------~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~ 191 (429)
..++|+|+-.|.|++..-+ .-..-|.+ +.+.++++..=......-++.+..+|..|+..+.|-.
T Consensus 80 ~~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVD 159 (257)
T PF12031_consen 80 EQLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVD 159 (257)
T ss_pred HHHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcc
Confidence 3578888888888874321 12222332 2233333221111124457888899999999998888
Q ss_pred ccccCCc-------HHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChh--HHHhcCcHHHHHHhccCC
Q 014196 192 PLSSSEI-------LPFLVGILESGSSVETKELCIGALYNLSAVLDNAR--PMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 192 ~i~~~g~-------i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~--~iv~~G~v~~Lv~lL~~~ 251 (429)
.|...+- +..|+++|......-.++-|+..|.||+..++... ...+.+.|..|+.++.+.
T Consensus 160 liLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 160 LILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred eeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 7765443 34555555544333689999999999998776543 345569999999998654
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=81.88 E-value=21 Score=34.44 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=103.1
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcc-
Q 014196 114 GVIQMLV-SMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHI- 191 (429)
Q Consensus 114 G~i~~Lv-~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~- 191 (429)
|.+..|| ..+++.++.+|+.|+.+|+-.+.-+.+. +. ..++.+...++..+.+.+..|..++..+........
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a~-~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----AK-EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----HH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 3454554 6778899999999999999998876322 11 124556677766678888888888888765422111
Q ss_pred --------ccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCC---c-chHHHHH
Q 014196 192 --------PLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK---E-RLSEKSL 259 (429)
Q Consensus 192 --------~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~---~-~~~~~a~ 259 (429)
.......+..+.+.+.+.++ +++..|+..++.|--+..... ...++..|+-+--++ + .-.+.++
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENP-ELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11224567778888888876 788889999988765543322 133445555444343 1 4566676
Q ss_pred HHHH-HhhC-ChhcHHHHhcCCCChHHHHHhcc
Q 014196 260 ATLG-NLVV-TSTGKKAMEDSPLVPESLIEILT 290 (429)
Q Consensus 260 ~~L~-~La~-~~e~~~~i~~~~~i~~~Lv~~L~ 290 (429)
.+.. ..+. +++.+..+.+ ..+ +++-.+..
T Consensus 177 ~~Ffp~y~~s~~~~Q~~l~~-~f~-~~l~~~~~ 207 (298)
T PF12719_consen 177 SVFFPVYASSSPENQERLAE-AFL-PTLRTLSN 207 (298)
T ss_pred HHHHHHHHcCCHHHHHHHHH-HHH-HHHHHHHh
Confidence 6655 6665 4555555554 333 36665554
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.27 E-value=1.1e+02 Score=37.46 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=81.3
Q ss_pred CCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc-CCc-chHHHHHHHHH-HhhCChhcHHHHhcCCCChHHH
Q 014196 209 GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS-MKE-RLSEKSLATLG-NLVVTSTGKKAMEDSPLVPESL 285 (429)
Q Consensus 209 ~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~-~~~-~~~~~a~~~L~-~La~~~e~~~~i~~~~~i~~~L 285 (429)
++...+...|...-..|+.+++-+..+- .-+|..++.-|+ -++ ...+.++..|. .|+..++.++.+-..| +- .+
T Consensus 344 pd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~-va-n~ 420 (2710)
T PRK14707 344 PDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQG-VS-NA 420 (2710)
T ss_pred CCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhh-HH-HH
Confidence 4433455544444445666665554443 334455555444 354 77777877886 8888899999987744 43 44
Q ss_pred HHhc-ccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHhcc
Q 014196 286 IEIL-TWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL--GSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 286 v~~L-~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~--~~~~~k~~A~~lL~~l~~~~ 354 (429)
+.-| +|.+.+.|...+ ..|..--.++.+.++.+--.++. ..+..+.. .++..+..|..+...+.+.+
T Consensus 421 lnalsKWPd~~~C~~aa-~~lA~~la~d~~l~~~~~p~~va-~~LnalSKWPd~p~c~~aa~~La~~l~~~~ 490 (2710)
T PRK14707 421 LNALAKWPDLPICGQAV-SALAGRLAHDTELCKALDPINVT-QALDALSKWPDTPICGQTASALAARLAHER 490 (2710)
T ss_pred HHHhhcCCcchhHHHHH-HHHHHHHhccHHHHhhcChHHHH-HHHHHhhcCCCChhHHHHHHHHHHHhcccH
Confidence 4444 565666565544 44443334567777777666644 44444443 35555566656777776543
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=81.22 E-value=54 Score=31.63 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=95.6
Q ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc-hH-H
Q 014196 74 LQKSV-KRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT-NK-A 150 (429)
Q Consensus 74 l~~lv-~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~-nk-~ 150 (429)
+..+| ..+++.++..|..|+..|...+--+.+.... .++.+...++.++..++..|+.++..+...... .- .
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 44444 4567778899999999999888766432222 267788888778899999999999987643210 00 0
Q ss_pred ------HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC---CcHHHHHHHHHH
Q 014196 151 ------IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESG---SSVETKELCIGA 221 (429)
Q Consensus 151 ------~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~~A~~a 221 (429)
.......+..+...+.+.+.+.+..++..+..|-..+.... ....+..|+-+--++ +...+++ ++..
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ-~L~~ 178 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQ-CLSV 178 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHH-HHHH
Confidence 01122345556666766677777777777777665443222 022334443332222 2123443 4443
Q ss_pred HH-HhccCCCChhHHHhcCcHHHHHHhccC
Q 014196 222 LY-NLSAVLDNARPMVSNGVVHTLLKLCSM 250 (429)
Q Consensus 222 L~-nLs~~~~n~~~iv~~G~v~~Lv~lL~~ 250 (429)
.. ..+..+...+..+....+|.+-.+...
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 33 445444433455555556666555543
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=81.12 E-value=12 Score=31.47 Aligned_cols=74 Identities=14% Similarity=0.087 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chHHHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHhcc
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVKIKKLMAELGVIQMLVSMVSTEV--IGRRRAAIKALIQLAN 143 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~~--~~~~~~A~~aL~nLa~ 143 (429)
....+..+-++|.++++.++..|+..|..+.+. .......+...+++..|+.++.... +.+++.++..+...+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999999999886 4557788888899999999998743 3488888888877654
|
Unpublished observations. Domain of unknown function. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.72 E-value=42 Score=36.91 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC
Q 014196 69 DDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 69 ~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~ 144 (429)
.+...++..+..++++-+..|-.++..|+.+.+.. +....+-..+++....++|++.|+-+--+|+..+..|+.-
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev 798 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV 798 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh
Confidence 34556888899999888889999999999999744 4456666789999999999999988888888766666543
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.03 E-value=10 Score=40.58 Aligned_cols=126 Identities=17% Similarity=0.127 Sum_probs=83.8
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP 192 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 192 (429)
.|.+..|++-..+.|..++-..+..|..+.-.. ......+-.+....|..-+....+.+|.+|+.+|..+=..+.. +
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-e- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-E- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-C-
Confidence 355667777788889999999998888776533 2233333345555555555555677888888888877643321 1
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh-----cCcHHHHHH
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS-----NGVVHTLLK 246 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~-----~G~v~~Lv~ 246 (429)
+..++..++.++++++++++++ .+|.|++.+......+++ .|++..++.
T Consensus 161 --e~~v~n~l~~liqnDpS~EVRR---aaLsnI~vdnsTlp~IveRarDV~~anRrlvY 214 (892)
T KOG2025|consen 161 --ECPVVNLLKDLIQNDPSDEVRR---AALSNISVDNSTLPCIVERARDVSGANRRLVY 214 (892)
T ss_pred --cccHHHHHHHHHhcCCcHHHHH---HHHHhhccCcccchhHHHHhhhhhHHHHHHHH
Confidence 2345678888999887768888 457788877777666665 366666553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 2e-21
Identities = 49/263 (18%), Positives = 89/263 (33%), Gaps = 13/263 (4%)
Query: 87 EEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTY 146
E A + L+ + + + G I LV M+ + V AI L L
Sbjct: 75 ETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133
Query: 147 TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH----IPLSSSEILPFL 202
K + AG L K+ ++ + L LA + + + +S L
Sbjct: 134 GAKMAVRLAGGLQKMVALLNKTNVKFLA---ITTDCLQILAYGNQESKLIILASGGPQAL 190
Query: 203 VGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKERLSEKSLAT 261
V I+ + + + L LS N +V G + L +RL + L T
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250
Query: 262 LGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAK 321
L NL + K L+ +L+++L + +A IL L + + + + +
Sbjct: 251 LRNL--SDAATKQEGMEGLLG-TLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306
Query: 322 SGIVHVSLQLALLGSPLAQRRAS 344
G + ++ L
Sbjct: 307 VGGIEALVRTVLRAGDREDITEP 329
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 3e-19
Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 12/275 (4%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVS-MVSTEVIGRRRAAIK 136
K L+ AA + +L+K++ +M ++ +V M +T + R
Sbjct: 23 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAG 82
Query: 137 ALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSS 196
L L++ + ++G + L K + + +S L +L
Sbjct: 83 TLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141
Query: 197 E-ILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSM--KE 252
L +V +L +V+ + L L+ ++ ++++G L+ + E
Sbjct: 142 AGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 200
Query: 253 RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS 312
+L + L L V S+ K A+ ++ + +L LT + + + + L L S
Sbjct: 201 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHLT-DPSQRLVQNCLWTLRNL---S 255
Query: 313 SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
+ G++ +QL A+ +L
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 49/276 (17%), Positives = 96/276 (34%), Gaps = 15/276 (5%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
VK L A + L K + G +Q +V++++ +
Sbjct: 107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGE----LLLSLSSLANTHIPL 193
L LA G +K I++ +G L V+ + T + +L LS ++ +
Sbjct: 167 LQILAYGNQESKLIILASGGPQAL---VNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 223
Query: 194 SSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKE 252
+ + L L S + C+ L NLS G++ TL++L S
Sbjct: 224 VEAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDI 280
Query: 253 RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWE-EKPKCQELSAYILMILA-- 309
+ + L NL + K M E+L+ + ++ E + L L
Sbjct: 281 NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340
Query: 310 -HQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRAS 344
++ ++ + + V ++L S +A+
Sbjct: 341 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 3e-17
Identities = 39/240 (16%), Positives = 84/240 (35%), Gaps = 5/240 (2%)
Query: 111 AELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDE 170
I L +++ E A + QL+ + AIM +++ + + + ++
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73
Query: 171 STRHEFG-ELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229
L +LS + + S +P LV +L S I L+NL
Sbjct: 74 VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQ 132
Query: 230 DNARPMV-SNGVVHTLLK-LCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIE 287
+ A+ V G + ++ L + + L L + K + + P++L+
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192
Query: 288 ILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
I+ K ++ +L +L+ S + + ++G + S + L
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 60/341 (17%), Positives = 106/341 (31%), Gaps = 55/341 (16%)
Query: 40 SRTLKNI-NCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEK 98
SR LK + C K I+E +Q L S + +
Sbjct: 207 SRVLKVLSVCSSNKPAIVEAG-------------GMQALGLHLTDPSQRLVQNCLWTLRN 253
Query: 99 LAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGIL 158
L+ K G++ LV ++ ++ I A L L Y NK ++ + G +
Sbjct: 254 LSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310
Query: 159 TKLPKNVDAVDESTRHE--FGELLLSLSSLANTHIPLS-------SSEILPFLVGILESG 209
L V V + E + +L L + H LP +V +L
Sbjct: 311 EAL---VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367
Query: 210 SSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK------------------ 251
S + +G + NL+ N P+ G + L++L
Sbjct: 368 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 427
Query: 252 -----ERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306
E + E L L + + +P +++L Q ++A +L
Sbjct: 428 EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP-LFVQLLY-SPIENIQRVAAGVLC 485
Query: 307 ILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
LA E + + G +L + A+ +L
Sbjct: 486 ELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 41/210 (19%), Positives = 93/210 (44%), Gaps = 8/210 (3%)
Query: 137 ALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLSS 195
A++ L N Y + A + + +L K ++ D+ ++ ++ LS A+ H + S
Sbjct: 1 AVVNLIN--YQDDAE-LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 196 SEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKERL 254
+++ +V +++ + VET G L+NLS + + +G + L+K+ S + +
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117
Query: 255 SEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSS 313
++ TL NL++ K A+ + + ++ +L + K ++ L ILA+ +
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQ-KMVALLN-KTNVKFLAITTDCLQILAYGNQ 175
Query: 314 EQRDKMAKSGIVHVSLQLALLGSPLAQRRA 343
E + + SG + + +
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWT 205
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 6/153 (3%)
Query: 199 LPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMV-SNGVVHTLLKLC--SMKERLS 255
+P L +L ++ LS + ++ S +V +++ + +
Sbjct: 19 IPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77
Query: 256 EKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQ 315
+ TL NL G A+ S +P L+++L + L L
Sbjct: 78 RCTAGTLHNLSHHREGLLAIFKSGGIPA-LVKMLG-SPVDSVLFYAITTLHNLLLHQEGA 135
Query: 316 RDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348
+ + +G + + L + + LQ
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 25/171 (14%), Positives = 49/171 (28%), Gaps = 24/171 (14%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRR----- 132
VK LH S A + + + E G I LV ++ +R
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420
Query: 133 -----------------AAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHE 175
AL LA + N+ ++ + + + + E+ +
Sbjct: 421 GTQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSPIENIQRV 479
Query: 176 FGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226
+L L+ + + L +L S + L+ +S
Sbjct: 480 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNE-GVATYAAAVLFRMS 529
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 3e-20
Identities = 46/275 (16%), Positives = 100/275 (36%), Gaps = 12/275 (4%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVS-MVSTEVIGRRRAAIK 136
K L+ AA + +L+K++ +M ++ +V M +T + R
Sbjct: 20 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAG 79
Query: 137 ALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSS 196
L L++ + ++G + L K + + +S L +L
Sbjct: 80 TLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 138
Query: 197 E-ILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKL--CSMKE 252
L +V +L +V+ + L L+ ++ ++++G L+ + E
Sbjct: 139 AGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 197
Query: 253 RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS 312
+L + L L V S+ K A+ ++ + +L LT + + + + L L S
Sbjct: 198 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHLT-DPSQRLVQNCLWTLRNL---S 252
Query: 313 SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
+ G++ +QL A+ +L
Sbjct: 253 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 5e-18
Identities = 60/341 (17%), Positives = 106/341 (31%), Gaps = 55/341 (16%)
Query: 40 SRTLKNI-NCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEK 98
SR LK + C K I+E +Q L S + +
Sbjct: 204 SRVLKVLSVCSSNKPAIVEAG-------------GMQALGLHLTDPSQRLVQNCLWTLRN 250
Query: 99 LAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGIL 158
L+ K G++ LV ++ ++ I A L L Y NK ++ + G +
Sbjct: 251 LSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307
Query: 159 TKLPKNVDAVDESTRHEF--GELLLSLSSLANTHIPLS-------SSEILPFLVGILESG 209
L V V + E + +L L + H LP +V +L
Sbjct: 308 EAL---VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 364
Query: 210 SSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK------------------ 251
S + +G + NL+ N P+ G + L++L
Sbjct: 365 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 424
Query: 252 -----ERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306
E + E L L + + +P +++L Q ++A +L
Sbjct: 425 EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP-LFVQLLY-SPIENIQRVAAGVLC 482
Query: 307 ILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
LA E + + G +L + A+ +L
Sbjct: 483 ELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 3e-17
Identities = 41/253 (16%), Positives = 88/253 (34%), Gaps = 5/253 (1%)
Query: 110 MAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVD 169
I L +++ E A + QL+ + AIM +++ + + + +
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN 69
Query: 170 ESTRHEFG-ELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228
+ L +LS + + S +P LV +L S I L+NL
Sbjct: 70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLHNLLLH 128
Query: 229 LDNARPMV-SNGVVHTLLK-LCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLI 286
+ A+ V G + ++ L + + L L + K + + P++L+
Sbjct: 129 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 188
Query: 287 EILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKL 346
I+ K ++ +L +L+ S + + ++G + S +
Sbjct: 189 NIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 247
Query: 347 LQWFKDERQAKMG 359
L+ D + G
Sbjct: 248 LRNLSDAATKQEG 260
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 8e-17
Identities = 43/268 (16%), Positives = 80/268 (29%), Gaps = 46/268 (17%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
VK L A + L K + G +Q +V++++ +
Sbjct: 104 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE 197
L LA G +K I++ +G
Sbjct: 164 LQILAYGNQESKLIILASG----------------------------------------- 182
Query: 198 ILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKERLSE 256
LV I+ + + + L LS N +V G + L +RL +
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242
Query: 257 KSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQR 316
L TL NL + K L+ +L+++L + +A IL L + + +
Sbjct: 243 NCLWTLRNL--SDAATKQEGMEGLLG-TLVQLLG-SDDINVVTCAAGILSNLTCNNYKNK 298
Query: 317 DKMAKSGIVHVSLQLALLGSPLAQRRAS 344
+ + G + ++ L
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEP 326
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 1e-13
Identities = 38/202 (18%), Positives = 88/202 (43%), Gaps = 6/202 (2%)
Query: 145 TYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLSSSEILPFLV 203
Y + A + + +L K ++ D+ ++ ++ LS A+ H + S +++ +V
Sbjct: 4 NYQDDAE-LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62
Query: 204 GILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKERLSEKSLATL 262
+++ + VET G L+NLS + + +G + L+K+ S + + ++ TL
Sbjct: 63 RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 263 GNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAK 321
NL++ K A+ + + ++ +L + K ++ L ILA+ + E + +
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQ-KMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILA 180
Query: 322 SGIVHVSLQLALLGSPLAQRRA 343
SG + + +
Sbjct: 181 SGGPQALVNIMRTYTYEKLLWT 202
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 9e-12
Identities = 43/246 (17%), Positives = 69/246 (28%), Gaps = 26/246 (10%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
VK LH S A + + + E G I LV ++ +R
Sbjct: 358 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 417
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE 197
Q +VE L L+ + I +
Sbjct: 418 GTQQQFVEGVRMEEIVEGCT--------------------GALHILARDVHNRIVIRGLN 457
Query: 198 ILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKERLSE 256
+P V +L S + + G L L+ + A + + G L +L S E ++
Sbjct: 458 TIPLFVQLLYSPIE-NIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT 516
Query: 257 KSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQR 316
+ A L + S K L E + E E + L I A
Sbjct: 517 YAAAVLFRM---SEDKPQDYKKRLSVELTSSLFR-TEPMAWNETADLGLDIGAQGEPLGY 572
Query: 317 DKMAKS 322
+ S
Sbjct: 573 RQDDPS 578
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 4e-20
Identities = 53/348 (15%), Positives = 111/348 (31%), Gaps = 19/348 (5%)
Query: 4 PSSSYMRLQFFSRIRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQ 63
P + Q Q + + + + + +R Q + + E E
Sbjct: 52 PEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRA------QRVRAAMFPETLDEG 105
Query: 64 SDIEEDDCVLLQKS-VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSM 122
I + V+RL S K I ++ I L +
Sbjct: 106 MQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAEL-------ATRAIPELTKL 158
Query: 123 VSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFG-ELLL 181
++ E A + QL+ + AIM +++ + + + ++ L
Sbjct: 159 LNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLH 218
Query: 182 SLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMV-SNGV 240
+LS + + S +P LV +L S I L+NL + A+ V G
Sbjct: 219 NLSHHREGLLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRLAGG 277
Query: 241 VHTLLK-LCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQE 299
+ ++ L + + L L + K + + P++L+ I+ K
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337
Query: 300 LSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
++ +L +L+ S + + ++G + S + L
Sbjct: 338 TTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 384
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 88.2 bits (218), Expect = 6e-19
Identities = 49/276 (17%), Positives = 102/276 (36%), Gaps = 15/276 (5%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMV-STEVIGRRRAAIK 136
V L+ + + + ++ LA + + K ++ G Q LV+++ + +
Sbjct: 282 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341
Query: 137 ALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSS 196
L L+ + +NK +VEAG + L ++ + L +LS A +
Sbjct: 342 VLKVLSVCS-SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--E 398
Query: 197 EILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLC---SMKE 252
+L LV +L S + G L NL+ N + G + L++ +E
Sbjct: 399 GLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 457
Query: 253 RLSEKSLATLGNLVVTSTGKK----AMEDSPLVPESLIEILTWEEKPKCQELSAYILMIL 308
++E ++ L +L + A+ +P ++++L + L+
Sbjct: 458 DITEPAICALRHLTSRHQDAEMAQNAVRLHYGLP-VVVKLLH-PPSHWPLIKATVGLIRN 515
Query: 309 AHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRAS 344
+ + G + +QL + QRR S
Sbjct: 516 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 6e-17
Identities = 42/268 (15%), Positives = 79/268 (29%), Gaps = 46/268 (17%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
V L A + L K + G +Q +V++++ +
Sbjct: 240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 299
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE 197
L LA G +K I++ +G
Sbjct: 300 LQILAYGNQESKLIILASG----------------------------------------- 318
Query: 198 ILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKERLSE 256
LV I+ + + + L LS N +V G + L +RL +
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 378
Query: 257 KSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQR 316
L TL NL + K L+ +L+++L + +A IL L + + +
Sbjct: 379 NCLWTLRNL--SDAATKQEGMEGLLG-TLVQLLG-SDDINVVTCAAGILSNLTCNNYKNK 434
Query: 317 DKMAKSGIVHVSLQLALLGSPLAQRRAS 344
+ + G + ++ L
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEP 462
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 7e-17
Identities = 60/341 (17%), Positives = 107/341 (31%), Gaps = 55/341 (16%)
Query: 40 SRTLKNI-NCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEK 98
SR LK + C K I+E +Q L S + +
Sbjct: 340 SRVLKVLSVCSSNKPAIVEAG-------------GMQALGLHLTDPSQRLVQNCLWTLRN 386
Query: 99 LAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGIL 158
L+ K G++ LV ++ ++ I A L L Y NK ++ + G +
Sbjct: 387 LSDAA---TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443
Query: 159 TKLPKNVDAVDESTRHEF--GELLLSLSSLANTHIP-------LSSSEILPFLVGILESG 209
L V V + E + +L L + H + LP +V +L
Sbjct: 444 EAL---VRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP 500
Query: 210 SSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMK------------------ 251
S + +G + NL+ N P+ G + L++L
Sbjct: 501 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 560
Query: 252 -----ERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306
E + E L L + + +P +++L Q ++A +L
Sbjct: 561 EGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIP-LFVQLLY-SPIENIQRVAAGVLC 618
Query: 307 ILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
LA E + + G +L + A+ +L
Sbjct: 619 ELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 2e-16
Identities = 46/275 (16%), Positives = 97/275 (35%), Gaps = 12/275 (4%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVS-MVSTEVIGRRRAAIK 136
K L+ AA + +L+K++ +M ++ +V M +T + R
Sbjct: 156 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSG 215
Query: 137 ALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSS 196
L L++ + ++G + L + + +S L +L
Sbjct: 216 TLHNLSHHR-EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL 274
Query: 197 E-ILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKL--CSMKE 252
L +V +L +V+ + L L+ ++ ++++G L+ + E
Sbjct: 275 AGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 333
Query: 253 RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS 312
+L + L L V S+ K A+ ++ + +L L Q L L L + S
Sbjct: 334 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHL----TDPSQRLVQNCLWTLRNLS 388
Query: 313 SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
+ G++ +QL A+ +L
Sbjct: 389 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 423
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 1e-19
Identities = 47/236 (19%), Positives = 113/236 (47%), Gaps = 7/236 (2%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
++L+ +E+ A ++ ++ + + + + + G + LV ++S+ + A+ A
Sbjct: 18 TQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 77
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL-SSS 196
L +A+G +++AG L L + + + +E E L +++S N I +
Sbjct: 78 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137
Query: 197 EILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLC-SMKERL 254
LP LV +L S + + + + AL N+++ + + ++ G + L++L S E++
Sbjct: 138 GALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 196
Query: 255 SEKSLATLGNLV-VTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309
+++L L N+ + K+A++++ + L ++ + E K Q+ + L L
Sbjct: 197 LQEALWALSNIASGGNEQKQAVKEAGALE-KLEQLQS-HENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 45/238 (18%), Positives = 109/238 (45%), Gaps = 7/238 (2%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
+ + ++++ + + +A + Q+ + +++AG L L + + + +E
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 174 HEFGELLLSLSSLANTHIPL-SSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA 232
E L +++S N I + LP LV +L S + + + + AL N+++ +
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQ 130
Query: 233 RPMV-SNGVVHTLLK-LCSMKERLSEKSLATLGNLVVTSTGKK-AMEDSPLVPESLIEIL 289
V G + L++ L S E++ +++L L N+ + A+ D+ +P +L+++L
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP-ALVQLL 189
Query: 290 TWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
+ + + + + L +A +EQ+ + ++G + QL + Q+ A + L
Sbjct: 190 S-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 26/108 (24%), Positives = 48/108 (44%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
V+ L + + + A + +A + + + + G + LV ++S+ + A+ A
Sbjct: 144 VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 203
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSS 185
L +A+G K + EAG L KL + +E + E E L L S
Sbjct: 204 LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 1e-17
Identities = 58/354 (16%), Positives = 125/354 (35%), Gaps = 32/354 (9%)
Query: 23 SKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVL----LQKSV 78
SK AR R + HN S+ +E + + + E+ + + + +
Sbjct: 95 SKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDK 154
Query: 79 KRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGR-------- 130
+ + A + KL+ ++ + + M ELG +Q + ++ +
Sbjct: 155 NPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS 213
Query: 131 ---RRAAIKALIQLANGTYTNKAIMV-EAGILTKLPKNVDAVDESTRHEFGELLLSLSSL 186
RR A AL L G NKA + G + L + + E + +L +LS
Sbjct: 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR 273
Query: 187 ANTHI--PLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD-NARPMVS-NGVVH 242
A+ + L + L+ T + + AL+NLSA N + + +G +
Sbjct: 274 ADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 333
Query: 243 TLLKL-----CSMKERLSEKSLATLGNLVVTSTG----KKAMEDSPLVPESLIEILTWEE 293
L+ + + E L N+ ++ + ++ + +L++ L
Sbjct: 334 FLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ-TLLQHLK-SH 391
Query: 294 KPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
+ L L+ ++ + ++ + G V + L + ++ L
Sbjct: 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-17
Identities = 50/317 (15%), Positives = 110/317 (34%), Gaps = 28/317 (8%)
Query: 56 IEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGV 115
I + +E + + + + A + KL+ ++ + + M ELG
Sbjct: 16 IRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGG 74
Query: 116 IQMLVSMVSTEVIGR-----------RRAAIKALIQLANGTYTNKA-IMVEAGILTKLPK 163
+Q + ++ + RR A AL L G NKA + G + L
Sbjct: 75 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 134
Query: 164 NVDAVDESTRHEFGELLLSLSSLANTH--IPLSSSEILPFLVGILESGSSVETKELCIGA 221
+ + E + +L +LS A+ + L + L+ T + + A
Sbjct: 135 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA 194
Query: 222 LYNLSAVLD-NARPMVS-NGVVHTLLKL-----CSMKERLSEKSLATLGNLVVTSTG--- 271
L+NLSA N + + +G + L+ + + E L N+
Sbjct: 195 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254
Query: 272 -KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQ 330
++ + ++ + +L++ L + L L+ ++ + ++ + G V +
Sbjct: 255 HRQILRENNCLQ-TLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKN 312
Query: 331 LALLGSPLAQRRASKLL 347
L + ++ L
Sbjct: 313 LIHSKHKMIAMGSAAAL 329
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-17
Identities = 39/191 (20%), Positives = 91/191 (47%), Gaps = 4/191 (2%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
V++L+ +E + A +++ ++A + + + + G + LV ++S+ + A+ A
Sbjct: 18 VQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 77
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP-LSSS 196
L +A+G +++AG L L + + + +E E L +++S N I + +
Sbjct: 78 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137
Query: 197 EILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLC-SMKERL 254
LP LV +L S + + + + AL N+++ + + + G + L +L E++
Sbjct: 138 GALPALVQLLSSPNE-QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Query: 255 SEKSLATLGNL 265
+++ L L
Sbjct: 197 QKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-09
Identities = 37/201 (18%), Positives = 92/201 (45%), Gaps = 9/201 (4%)
Query: 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTR 173
+ +V +++ ++A++ L Q+A+G +++AG L L + + + +E
Sbjct: 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 174 HEFGELLLSLS--SLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV-LD 230
E L +++ + + LP LV +L S + + + + AL N+++ +
Sbjct: 72 QEALWALSNIASGGNEQIQA-VIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNE 129
Query: 231 NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTG-KKAMEDSPLVPESLIEI 288
+ ++ G + L++L S ++ +++L L N+ K+A++++ + L ++
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE-KLEQL 188
Query: 289 LTWEEKPKCQELSAYILMILA 309
+ E K Q+ + L L
Sbjct: 189 QS-HENEKIQKEAQEALEKLQ 208
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 6e-08
Identities = 28/151 (18%), Positives = 67/151 (44%), Gaps = 6/151 (3%)
Query: 196 SEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSN-GVVHTLLK-LCSMKER 253
LP +V L S + + + L +++ + V + G + L++ L S E+
Sbjct: 11 GSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 69
Query: 254 LSEKSLATLGNLVVTSTGKK-AMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS 312
+ +++L L N+ + A+ D+ +P +L+++L+ + + + + L +A
Sbjct: 70 ILQEALWALSNIASGGNEQIQAVIDAGALP-ALVQLLS-SPNEQILQEALWALSNIASGG 127
Query: 313 SEQRDKMAKSGIVHVSLQLALLGSPLAQRRA 343
+EQ + +G + +QL + + A
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEA 158
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 15/147 (10%)
Query: 41 RTLKNI--NCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEK 98
L NI E+ Q +I D L V+ L + + + A +
Sbjct: 76 WALSNIASGGNEQIQAVI-------------DAGALPALVQLLSSPNEQILQEALWALSN 122
Query: 99 LAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGIL 158
+A + + + + G + LV ++S+ + A+ AL +A+G K + EAG L
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182
Query: 159 TKLPKNVDAVDESTRHEFGELLLSLSS 185
KL + +E + E E L L S
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 1e-14
Identities = 50/291 (17%), Positives = 113/291 (38%), Gaps = 14/291 (4%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
++ L+ GS E KE A + +A + + + + ++ ++ + ++ R A
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS-SS 196
L L G V + L L K + ++D T + + LS I
Sbjct: 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV 298
Query: 197 EILPFLVGILESGSSVETKELCIGALYNLSAVLD-NARPMVSNGVVHTLLKL-CSMKERL 254
I LV +L S+ + + A+ N+ D + +++ GV+ L L S KE +
Sbjct: 299 RIPKRLVELLSHEST-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI 357
Query: 255 SEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA---H 310
+++ T+ N+ + +A+ D+ L+P + L + K ++ + + + +
Sbjct: 358 KKEACWTISNITAGNTEQIQAVIDANLIP--PLVKLLEVAEYKTKKEACWAISNASSGGL 415
Query: 311 QSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRA----SKLLQWFKDERQAK 357
Q + + G + L + +L+ + +++A+
Sbjct: 416 QRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR 466
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 5e-12
Identities = 49/363 (13%), Positives = 113/363 (31%), Gaps = 15/363 (4%)
Query: 1 MSIPSSSYMRLQFFSRIRQFIQSKSARRRQNEP--------NHNHEKSRTLKNINCQEEK 52
+ R F +F + RRR + + K R +
Sbjct: 8 STSKFVPEYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADS 67
Query: 53 QVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVK-IKKLMA 111
E L + ++L+ +E+ A + ++ + + ++
Sbjct: 68 DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127
Query: 112 ELGVIQMLVSMVSTEV-IGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDE 170
+ GV+ LV + + A AL +A+GT ++V+A + + +
Sbjct: 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187
Query: 171 STRHEFGELLLSLSSLANTHIP-LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229
+ + L +++ + + + + ++G+ S + L NL
Sbjct: 188 EVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGK 246
Query: 230 DNARPM-VSNGVVHTLLKLC-SMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIE 287
V + + TL KL SM + + L +P+ L+E
Sbjct: 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 306
Query: 288 ILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
+L+ E Q + + + + Q + +G++ L ++ A +
Sbjct: 307 LLS-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365
Query: 348 QWF 350
Sbjct: 366 SNI 368
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 8e-06
Identities = 31/228 (13%), Positives = 76/228 (33%), Gaps = 11/228 (4%)
Query: 140 QLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN--THIPLSSSE 197
++ + + L ++ + +++ D + + S + + +
Sbjct: 71 DESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAG 130
Query: 198 ILPFLVGILESGSSVETKELCIGALYNLSAVLD-NARPMVSNGVVHTLLK-LCSMKERLS 255
++P LV + + AL N+++ + +V V ++ L + +
Sbjct: 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190
Query: 256 EKSLATLGNLVVTSTG-KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSE 314
E+++ LGN+ ST + + + ++ + KP + + L L
Sbjct: 191 EQAIWALGNVAGDSTDYRDYVLQCNAME-PILGLFN-SNKPSLIRTATWTLSNLCRGKKP 248
Query: 315 QRDKMAKSGIVHVSLQLALLGSPLAQRRA----SKLLQWFKDERQAKM 358
Q D S + +L A S L ++ QA +
Sbjct: 249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 4e-14
Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 26/218 (11%)
Query: 74 LQKSVKRLHFGSWEE--KEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRR 131
L+++V L AA I+ + + +K + +L I L+ ++ + +
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 132 RAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHI 191
RA AL L NK + E + +L + + + + LL S +
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 192 PLSSSEILPFLVGILESGSSVETKELCI---------------GALYNLSAVLDNARPMV 236
L +E L L + S + G L N+S+ + R +
Sbjct: 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAM 189
Query: 237 --SNGVVHTLLKLCS-------MKERLSEKSLATLGNL 265
+G++ +L+ ++ +E + L NL
Sbjct: 190 RRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 28/172 (16%), Positives = 57/172 (33%), Gaps = 22/172 (12%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMV-STEVIGRRRAAIK 136
++ L + + + + L ED K +AEL + L+ ++ T + ++
Sbjct: 58 LQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITG 117
Query: 137 ALIQLANGTYTNKAIMVEAGI--------------LTKLPKNVDAVDESTRHEFGELLLS 182
L L++ ++ EA + PK +D + L +
Sbjct: 118 LLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRN 177
Query: 183 LSSL--ANTHIPLSSSEILPFLVGILESGSSVE-----TKELCIGALYNLSA 227
+SS ++ LV + + E C+ L+NLS
Sbjct: 178 MSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 1e-13
Identities = 41/278 (14%), Positives = 97/278 (34%), Gaps = 11/278 (3%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAK--EDVKIKKLMAELGVIQMLVS-MVSTEVIGRRRAA 134
++ + S E++ A ++ KL + I ++++ GV+ V + E + +
Sbjct: 26 IEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFES 85
Query: 135 IKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELL--LSLSSLANTHIP 192
L +A+G I+++AG + + + + E + + L ++ S
Sbjct: 86 AWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY- 144
Query: 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS-NGVVHTLLKLCSMK 251
+ ILP L+ + + + + AL NL + ++ L L +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 252 -ERLSEKSLATLGNLV-VTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309
+ + L L + +A+ D+ + L+E+L K + + +
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCR-RLVELLM-HNDYKVVSPALRAVGNIV 262
Query: 310 HQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
Q + + L L ++ A +
Sbjct: 263 TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-10
Identities = 31/192 (16%), Positives = 77/192 (40%), Gaps = 5/192 (2%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
L + A + L+ + + + GV + LV ++ A++A
Sbjct: 198 SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRA 257
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP-LSSS 196
+ + G +++ L L + + ES + E + ++++ I + +
Sbjct: 258 VGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDA 317
Query: 197 EILPFLVGILESGSSVETKELCIGALYNLSAV--LDNARPMVSNGVVHTLLKLCSMKE-R 253
I P L+ IL++ T++ A+ N ++ + + +V G + L L ++ + +
Sbjct: 318 NIFPALISILQTAEF-RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSK 376
Query: 254 LSEKSLATLGNL 265
+ + +L L N+
Sbjct: 377 IVQVALNGLENI 388
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 41/264 (15%), Positives = 84/264 (31%), Gaps = 46/264 (17%)
Query: 87 EEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTY 146
A + L + + + +L ++ A AL L++G
Sbjct: 165 TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN 224
Query: 147 TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGIL 206
+++AG + LV +L
Sbjct: 225 DKIQAVIDAG-----------------------------------------VCRRLVELL 243
Query: 207 ESGSSVETKELCIGALYNLSAVLDNARPMVSN-GVVHTLLKL-CSMKERLSEKSLATLGN 264
+ + + A+ N+ D ++ N + +LL L S KE + +++ T+ N
Sbjct: 244 MH-NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302
Query: 265 LVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSG 323
+ + + D+ + P +LI IL E +E + I + S+EQ + + G
Sbjct: 303 ITAGNRAQIQTVIDANIFP-ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELG 361
Query: 324 IVHVSLQLALLGSPLAQRRASKLL 347
+ L + + A L
Sbjct: 362 CIKPLCDLLTVMDSKIVQVALNGL 385
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-08
Identities = 23/170 (13%), Positives = 63/170 (37%), Gaps = 3/170 (1%)
Query: 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRR 132
+ ++ V+ L ++ A + + + D +++ +Q L+ ++S+ ++
Sbjct: 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294
Query: 133 AAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP 192
A + + G +++A I L + + TR E + + +S +
Sbjct: 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354
Query: 193 --LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGV 240
L + L +L S + ++ + L N+ + + G+
Sbjct: 355 KYLVELGCIKPLCDLLTVMDS-KIVQVALNGLENILRLGEQEAKRNGTGI 403
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 9/167 (5%)
Query: 183 LSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARP---MVSNG 239
+ N I ++ ++ S S E + L + N + + G
Sbjct: 6 HEAQINNMEMAPGGVITSDMIEMIFSKS-PEQQLSATQKFRKLLSKEPNPPIDEVISTPG 64
Query: 240 VVHTLLKLCSMKE--RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPK 296
VV ++ KE L +S L N+ S + + + VP IE+L+ E
Sbjct: 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVP-IFIELLS-SEFED 122
Query: 297 CQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRA 343
QE + + L +A S+ RD + I+ LQL + L R
Sbjct: 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 1e-13
Identities = 59/377 (15%), Positives = 122/377 (32%), Gaps = 70/377 (18%)
Query: 24 KSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHF 83
+ RQ H S ++ ++ ++ + + ++ VK ++
Sbjct: 23 AAKFERQ------HMDSP---DLGTDDD-----DKAMADIGSNQGTVNWSVEDIVKGINS 68
Query: 84 GSWEEKEMAAKEIEKLA-KEDVKIKKLMAELGVIQMLVS-MVSTEVIGRRRAAIKALIQL 141
+ E + A + KL +E + G+I VS + T+ + + AL +
Sbjct: 69 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI 128
Query: 142 ANGTYTNKAIMVEAGILTKL--------------------------PKNVDAVDES---- 171
A+GT +V+ G + D V +
Sbjct: 129 ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAID 188
Query: 172 ------TRHEFGELLLSL--------SSLANTHIPLSSSEIL----PFLVGILESGSSVE 213
+ L S+L P + + P LV +L E
Sbjct: 189 PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-E 247
Query: 214 TKELCIGALYNLSAVLDNARPMVSN-GVVHTLLK-LCSMKERLSEKSLATLGNLVV-TST 270
A+ L+ + MV GVV L+K L + + + +L +GN+V T
Sbjct: 248 VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE 307
Query: 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQ 330
+ + D+ + +LT K Q+ + + + + +Q ++ G+V +
Sbjct: 308 QTQKVIDAGALA-VFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365
Query: 331 LALLGSPLAQRRASKLL 347
+ Q+ A+ +
Sbjct: 366 VLSKADFKTQKEAAWAI 382
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 7e-09
Identities = 37/192 (19%), Positives = 85/192 (44%), Gaps = 5/192 (2%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
V+ LH E + I L + +++ + GV+ LV ++ + A++A
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP-LSSS 196
+ + GT +++AG L P + + + E + ++++ I + +
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 357
Query: 197 EILPFLVGILESGSSVETKELCIGALYNLS--AVLDNARPMVSNGVVHTLLKLCSMKE-R 253
++PFLVG+L +T++ A+ N + ++ +V G++ L+ L S K+ +
Sbjct: 358 GLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 254 LSEKSLATLGNL 265
+ + L + N+
Sbjct: 417 IIQVILDAISNI 428
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 24/185 (12%), Positives = 68/185 (36%), Gaps = 4/185 (2%)
Query: 89 KEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148
+ L + L A ++ LV ++ + A+ L +G
Sbjct: 207 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER 266
Query: 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHI-PLSSSEILPFLVGILE 207
++V+ G++ +L K + A + + ++ + + + + L +L
Sbjct: 267 IEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT 326
Query: 208 SGSSVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLC-SMKERLSEKSLATLGNL 265
+ + ++ + N++A D + +V++G+V L+ + + +++ + N
Sbjct: 327 NPKT-NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY 385
Query: 266 VVTST 270
T
Sbjct: 386 TSGGT 390
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 70.0 bits (170), Expect = 5e-13
Identities = 55/331 (16%), Positives = 97/331 (29%), Gaps = 56/331 (16%)
Query: 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRA 133
L + + L F K AA ++ L + K+K + +L I +LV ++
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 134 AIKALIQLANGT-YTNKAIMVEAGILTKLPKNV-DAVDESTRHEFGELLLSLSSLANTHI 191
A AL ++ G NK + + L + + A D L +LSS + +
Sbjct: 110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169
Query: 192 PLSSSEILPFLVGILESGSSVETKEL----------------CIGALYNLSAVLDNARP- 234
+ + ++ S E + G L N+S+ AR
Sbjct: 170 EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRK 229
Query: 235 -MVSNGVVHTLLKL--------------------------------CSMKERLSEKSLAT 261
+G+V L+ + ER E +
Sbjct: 230 LRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNV 289
Query: 262 LGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA----HQSSEQRD 317
N + + P V I +L + P E SA + L R
Sbjct: 290 ANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS 349
Query: 318 KMAKSGIVHVSLQLALLGSPLAQRRASKLLQ 348
+ + + L + AS L+
Sbjct: 350 ALRQEKALSAIADLLTNEHERVVKAASGALR 380
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 56.9 bits (136), Expect = 6e-09
Identities = 24/176 (13%), Positives = 60/176 (34%), Gaps = 4/176 (2%)
Query: 88 EKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT 147
+ E + ++ + + +++M+ + + A L L
Sbjct: 23 QHERGSLASLDSLRKGGPPPPNWRQ-PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDK 81
Query: 148 NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE--ILPFLVGI 205
K + + + L +D + L ++S + ++ +P LV +
Sbjct: 82 VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRL 141
Query: 206 LESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLAT 261
L ++ E+ G L+NLS+ D+ + + + +H L + E+
Sbjct: 142 LRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNE 196
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 2e-12
Identities = 44/302 (14%), Positives = 90/302 (29%), Gaps = 30/302 (9%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKA 137
V+ L + + + A I+ +D K+ + +LG I LV ++ + ++AA A
Sbjct: 8 VQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGA 67
Query: 138 LIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE 197
L L + TNK + + + + + LL S + ++
Sbjct: 68 LRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIAD 127
Query: 198 ILPFLVGILESGSS---------------VETKELCIGALYNLSAVLDNARPMVS-NGVV 241
LP L + S E G L NLS+ + M + +G++
Sbjct: 128 ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLI 187
Query: 242 HTLLKLCSMKERLSEKSLATLGNLVVTSTGKK------------AMEDSPLVPESLIEIL 289
+L+ S ++ N + +E + +
Sbjct: 188 DSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSST 247
Query: 290 TWEEKPKCQELSAYILMILAHQ--SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
+ ++ L + + + + S + L L A A
Sbjct: 248 GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGA 307
Query: 348 QW 349
Sbjct: 308 LQ 309
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 4e-08
Identities = 34/262 (12%), Positives = 82/262 (31%), Gaps = 17/262 (6%)
Query: 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHE 175
I V +S++ + + + K + + G + KL + + +++ +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 176 FGELLLSLSSLANTH-IPLSSSEILPFLVGILESGSSVETKELCIGALYNLS-------A 227
L +L + T+ + + V +L + E ++ G L+NLS
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 228 VLDNARPMVSNGVVHTLLKLCSMKERLSEKSL---------ATLGNLVVTSTGKKAMEDS 278
++ +A P++++ V+ C +S + + L NL G++ M +
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 279 PLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPL 338
+ +SL+ + + + + + R A
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243
Query: 339 AQRRASKLLQWFKDERQAKMGP 360
+ K P
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCP 265
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 2e-11
Identities = 44/299 (14%), Positives = 99/299 (33%), Gaps = 16/299 (5%)
Query: 55 IIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLA---KEDVKIKKLMA 111
++ + + L ++ +R ++K++ + LA + +KL+
Sbjct: 359 SYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIE 418
Query: 112 ELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDES 171
+ I L+ + + + L N Y + ++ E L K K +
Sbjct: 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNA-YEKQEMLPEMIELAKFAKQHIPEEHE 477
Query: 172 TRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDN 231
L + + L++ I L + ++ S ++EL L + + +
Sbjct: 478 --------LDDVDFINKRITVLANEGITTALCALAKTESH-NSQELIARVLNAVCGLKEL 528
Query: 232 ARPMVSNGVVHTLLKLC-SMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVP--ESLIEI 288
+V G V LL++ E+ + L + +T + + + L+ +
Sbjct: 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNL 588
Query: 289 LTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347
L + S L LA + R ++ K V + R A++ L
Sbjct: 589 LQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 9e-10
Identities = 50/333 (15%), Positives = 103/333 (30%), Gaps = 81/333 (24%)
Query: 42 TLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVK-RLHFGSWEEKE---MAAKEIE 97
LKN N E ++E I+ + S +L S + + + +K E
Sbjct: 188 NLKNCNSPET---VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 98 K--LAKEDVKIKKLMAELGV-IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVE 154
L +V+ K + ++L++ T R + L+ T T+ ++
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLT---T-----RFKQVTD--FLSAATTTHISLDHH 294
Query: 155 AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVET 214
+ LT DE LLL +P P + I
Sbjct: 295 SMTLTP--------DEVK-----SLLLKYLDCRPQDLPREVLTTNPRRLSI--------- 332
Query: 215 KELCIGALY-NLSAVLDNARPMVSNGVVHTLLKLC-------SMKERLSEKSLATLGNLV 266
I + A DN + V+ + T+++ ++ L+
Sbjct: 333 ----IAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVF---- 381
Query: 267 VTSTGKKAMEDSPLVPESLIEILTWEEKPK-CQELSAYILMILAHQSS--EQRDKMAKSG 323
+ +P L+ ++ W + K + ++ H+ S E++ K +
Sbjct: 382 --------PPSAH-IPTILLSLI-WFDVIKSDVMV----VVNKLHKYSLVEKQPKESTIS 427
Query: 324 IVHVSLQLALLGSPLAQRRA-SKLLQWFKDERQ 355
I S+ L L + ++ + +
Sbjct: 428 I-P-SIYLELKVKLENEYALHRSIVDHYNIPKT 458
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 1e-08
Identities = 65/435 (14%), Positives = 133/435 (30%), Gaps = 146/435 (33%)
Query: 43 LKNINCQE----EKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSW----EEKEMAAK 94
+ N +C++ K ++ S E D ++ + +V W +++EM K
Sbjct: 30 VDNFDCKDVQDMPKSIL--------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 95 EIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVE 154
+E++ + + K L+S + TE + I+ + Y + +
Sbjct: 82 FVEEVLRINYK------------FLMSPIKTEQRQPSMMT-RMYIEQRDRLYNDNQVFA- 127
Query: 155 AGILTKLPKNVDAVDESTRHE-FGEL---LLSL----------------SSLANTHIPLS 194
NV +R + + +L LL L + +A
Sbjct: 128 -------KYNV------SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD--VCL 172
Query: 195 SSEIL---PFLVGI--LESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS 249
S ++ F I L + + E + L L +D S+ + L++ S
Sbjct: 173 SYKVQCKMDF--KIFWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 250 MKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEIL--TWEEK------PKCQELS 301
++ L ++ ++ P L+ +L K C+
Sbjct: 230 IQAEL-----------------RRLLKSKPY-ENCLL-VLLNVQNAKAWNAFNLSCK--- 267
Query: 302 AYILMILAHQSSEQRDK-----MAKSGIVHVSLQLALLGSPLAQRRASKLL-QWFKDERQ 355
IL+ R K ++ + H+SL + L LL ++
Sbjct: 268 --ILLT-------TRFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKY------ 310
Query: 356 AKMGPHSGPQTRRVSIGSPVS--PREAQEGKKMMKNLVQQSLHKNLEMITRRANAAADSS 413
+ PRE +++ +S+ L + D
Sbjct: 311 ---------------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-- 353
Query: 414 KLKSLVISTSCKSLP 428
KL + +I +S L
Sbjct: 354 KLTT-IIESSLNVLE 367
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 429 | |||
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.98 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.98 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.97 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.97 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.97 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.97 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.96 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.96 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.96 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.95 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.95 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.95 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.95 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.95 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.95 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.95 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.94 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.94 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.94 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.94 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.93 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.93 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.93 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.91 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.91 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.9 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.89 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.87 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.83 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.81 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.57 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.44 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.36 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.27 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.27 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.26 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.22 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.18 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.17 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.01 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 99.01 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.98 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.97 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.95 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 98.89 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.89 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.88 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.62 | |
| 2kr4_A | 85 | Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri | 98.6 | |
| 1wgm_A | 98 | Ubiquitin conjugation factor E4A; ubiquitinating e | 98.58 | |
| 3m62_A | 968 | Ubiquitin conjugation factor E4; armadillo-like re | 98.55 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.53 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.53 | |
| 2kre_A | 100 | Ubiquitin conjugation factor E4 B; U-box domain, E | 98.52 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.5 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.5 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.47 | |
| 2f42_A | 179 | STIP1 homology and U-box containing protein 1; cha | 98.44 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.4 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.39 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.38 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.23 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.19 | |
| 2yu4_A | 94 | E3 SUMO-protein ligase NSE2; SP-ring domain, struc | 98.14 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.1 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.1 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.05 | |
| 2bay_A | 61 | PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l | 98.04 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.99 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 97.94 | |
| 1t1h_A | 78 | Gspef-atpub14, armadillo repeat containing protein | 97.91 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.83 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 97.71 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.68 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.64 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.61 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.58 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.54 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 97.47 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.47 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.45 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 97.43 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.37 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.25 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.2 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.89 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.68 | |
| 3htk_C | 267 | E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- | 96.47 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 96.4 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.13 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 95.75 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 95.35 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 94.95 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 94.76 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 94.2 | |
| 3ztg_A | 92 | E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR | 93.37 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 93.21 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 93.15 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 92.05 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 91.77 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 91.39 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 91.26 | |
| 2y43_A | 99 | E3 ubiquitin-protein ligase RAD18; DNA repair, met | 91.16 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 90.77 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 90.64 | |
| 3fl2_A | 124 | E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA | 89.25 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 89.23 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 88.8 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 88.37 | |
| 1z6u_A | 150 | NP95-like ring finger protein isoform B; structura | 86.68 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 86.64 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 86.62 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 86.4 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 86.14 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 85.6 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 84.16 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 83.64 | |
| 2ckl_A | 108 | Polycomb group ring finger protein 4; BMI1, RING1B | 82.97 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 82.5 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 82.3 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 82.07 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 81.43 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 80.95 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 80.72 |
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=283.54 Aligned_cols=265 Identities=19% Similarity=0.202 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHhccCCCchHHHHHh
Q 014196 86 WEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-----------EVIGRRRAAIKALIQLANGTYTNKAIMVE 154 (429)
Q Consensus 86 ~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----------~~~~~~~~A~~aL~nLa~~~~~nk~~iv~ 154 (429)
...+..|+++|.+++.+ +++|..|++.|++++|+.+|.+ .++.+|+.|+++|.||+.+++.+|..|..
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34556899999999975 7999999999999999999953 24679999999999999998668888865
Q ss_pred -cCccchhhhhccCCCHHHHHHHHHHHHHhhcc--CCCccccccCCcHHHHHHhhh-cCCcHHHHHHHHHHHHHhcc-CC
Q 014196 155 -AGILTKLPKNVDAVDESTRHEFGELLLSLSSL--ANTHIPLSSSEILPFLVGILE-SGSSVETKELCIGALYNLSA-VL 229 (429)
Q Consensus 155 -~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~A~~aL~nLs~-~~ 229 (429)
.|+||+|+.+|.+++.+.++.++++|.+|+.. ++++..|.+.|+||+|+++|. +++. .+++.|+.+|+||+. ++
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~-~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSVLSALWNLSAHCT 203 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTCH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCH-HHHHHHHHHHHHHHccCh
Confidence 56699999999999999999999999999975 357888899999999999864 4555 789999999999999 56
Q ss_pred CChhHHH-hcCcHHHHHHhccCCc-----chHHHHHHHHHHhhC----ChhcHHHHhcCCCChHHHHHhcccCCChhHHH
Q 014196 230 DNARPMV-SNGVVHTLLKLCSMKE-----RLSEKSLATLGNLVV----TSTGKKAMEDSPLVPESLIEILTWEEKPKCQE 299 (429)
Q Consensus 230 ~n~~~iv-~~G~v~~Lv~lL~~~~-----~~~~~a~~~L~~La~----~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e 299 (429)
+|+..++ +.|++|+|+.+|...+ ++++.|+.+|.||+. ++++++.+.+.|+++ .|+++|. +++...++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~-~Lv~lL~-~~~~~v~~ 281 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ-TLLQHLK-SHSLTIVS 281 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHH-HHHHHTT-CSCHHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHH-HHHHHHc-CCChHHHH
Confidence 7888888 7899999999998652 389999999999995 899999999988875 8999998 78999999
Q ss_pred HHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 300 LSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 300 ~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
.|+++|++++.+++++++.+++.|++|+|++++.++++.+++.|+|.|.+|....
T Consensus 282 ~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999888999999999999999999999999999999999999999643
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=292.58 Aligned_cols=280 Identities=20% Similarity=0.165 Sum_probs=239.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
++.+|..|.+++++.|..|+..|++++.+++.++..+++.|+||.||.+|+++++.+++.|+++|.||+.++++||..|+
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 78999999999999999999999999988888899999999999999999999999999999999999998668999999
Q ss_pred hcCccchhhhhcc-CCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhh--------cCC-------cHHHHHH
Q 014196 154 EAGILTKLPKNVD-AVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILE--------SGS-------SVETKEL 217 (429)
Q Consensus 154 ~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~--------~~~-------~~~~~~~ 217 (429)
++|+||+|+.+|. +++.+.++.++++|++|+..++++..+.+ |++|+|+++|. ++. ...+.++
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 9999999999998 78899999999999999999888988888 99999999993 221 1246669
Q ss_pred HHHHHHHhccCCCChhHHHhc-CcHHHHHHhccC------C-cchHHHHHHHHHHhhCC---------------------
Q 014196 218 CIGALYNLSAVLDNARPMVSN-GVVHTLLKLCSM------K-ERLSEKSLATLGNLVVT--------------------- 268 (429)
Q Consensus 218 A~~aL~nLs~~~~n~~~iv~~-G~v~~Lv~lL~~------~-~~~~~~a~~~L~~La~~--------------------- 268 (429)
|+++|+|||.+++++..+++. |++++|+.+|.+ . +.+++.|+.+|.+|+..
T Consensus 163 a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~ 242 (457)
T 1xm9_A 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242 (457)
T ss_dssp HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred HHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccc
Confidence 999999999998888999998 999999999974 3 37899999999999732
Q ss_pred ------------------------------hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCH----H
Q 014196 269 ------------------------------STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSS----E 314 (429)
Q Consensus 269 ------------------------------~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~----~ 314 (429)
+++.+.+.+.+.+ +.|+.+|....++..++.|+++|+++|.++. .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l-~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAI-RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp -----------------------CCCCCSSCCGGGGGGSHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchH-HHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 1122233333333 4788888745678999999999999998542 2
Q ss_pred H-HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Q 014196 315 Q-RDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQ 355 (429)
Q Consensus 315 ~-~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 355 (429)
. +..+.++|++|.|+.++.+++.++++.|+|+|+++..+.+
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 3 3344468999999999999999999999999999997554
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=285.55 Aligned_cols=260 Identities=19% Similarity=0.209 Sum_probs=231.5
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHhccCCCchHHHHHh-cCc
Q 014196 90 EMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST-----------EVIGRRRAAIKALIQLANGTYTNKAIMVE-AGI 157 (429)
Q Consensus 90 ~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s-----------~~~~~~~~A~~aL~nLa~~~~~nk~~iv~-~G~ 157 (429)
..|+++|.+++. ++++|..|++.|++++|+.+|.. .++.+++.|+|+|.||+.+++.++..+.. .|+
T Consensus 166 ~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 166 CPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 389999999976 58999999999999999999952 24678999999999999998657877764 566
Q ss_pred cchhhhhccCCCHHHHHHHHHHHHHhhcc--CCCccccccCCcHHHHHHhhh-cCCcHHHHHHHHHHHHHhcc-CCCChh
Q 014196 158 LTKLPKNVDAVDESTRHEFGELLLSLSSL--ANTHIPLSSSEILPFLVGILE-SGSSVETKELCIGALYNLSA-VLDNAR 233 (429)
Q Consensus 158 i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~A~~aL~nLs~-~~~n~~ 233 (429)
||+|+.+|.+.+.+.++.++++|.+|+.. ++++..|.+.|+||+|+++|. +++. .+++.|+.+|+||+. +++|+.
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~-~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE-STLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSH-HHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCH-HHHHHHHHHHHHHccCCHHHHH
Confidence 99999999999999999999999999975 357888889999999999864 4554 789999999999999 668888
Q ss_pred HHH-hcCcHHHHHHhccCCc-----chHHHHHHHHHHhh----CChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 234 PMV-SNGVVHTLLKLCSMKE-----RLSEKSLATLGNLV----VTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 234 ~iv-~~G~v~~Lv~lL~~~~-----~~~~~a~~~L~~La----~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
.++ +.|++|+|+.+|.... .+++.|+.+|.||+ .++++++.|.+.|+++ .|+++|. +++...++.|++
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~-~Lv~LL~-~~~~~v~~~A~~ 401 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ-TLLQHLK-SHSLTIVSNACG 401 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH-HHHHHSS-CSCHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHH-HHHHHHc-CCChHHHHHHHH
Confidence 888 7899999999998653 38999999999999 4899999999988876 8999998 789999999999
Q ss_pred HHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 304 ILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 304 ~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
+|++++.+++++++.+++.|++|+|+.++.++++.+++.|+|.|.+|...
T Consensus 402 aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 402 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999988899999999999999999999999999999999999999863
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=288.11 Aligned_cols=284 Identities=19% Similarity=0.134 Sum_probs=237.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-CCchH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANG-TYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~nk 149 (429)
...++.+|..|.+++++.|..|+..|++++.+++++|..+++.|+||+||.+|.+++.++|+.|+++|.||+.+ +++||
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 34599999999999999999999999999998899999999999999999999999999999999999999985 45799
Q ss_pred HHHHhcCccchhhhhccC-CCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhh---c--------------CCc
Q 014196 150 AIMVEAGILTKLPKNVDA-VDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILE---S--------------GSS 211 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~--------------~~~ 211 (429)
..|+++|+||+|+.+|.+ .+.+.++.++.+|++||.+++++..|.. ++||+|++++. + .+.
T Consensus 127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 999999999999999987 5678899999999999999899999985 57999999872 1 112
Q ss_pred HHHHHHHHHHHHHhccCCCC-hhHHHhc-CcHHHHHHhccC------Cc-chHHHHHHHHHHhhCChhcH--------H-
Q 014196 212 VETKELCIGALYNLSAVLDN-ARPMVSN-GVVHTLLKLCSM------KE-RLSEKSLATLGNLVVTSTGK--------K- 273 (429)
Q Consensus 212 ~~~~~~A~~aL~nLs~~~~n-~~~iv~~-G~v~~Lv~lL~~------~~-~~~~~a~~~L~~La~~~e~~--------~- 273 (429)
..++++|.++|+|||.+.++ +..|++. |++++|+.+|.. .+ ..++.|+.+|.||+...+.. .
T Consensus 206 ~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~ 285 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285 (584)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC----
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence 37899999999999997754 8888885 667899999863 23 78999999999999752100 0
Q ss_pred --------HHhcCCCC--------hHHHHHhcccCCChhHHHHHHHHHHHHhhCC----HHHHHHHHhCCchHHHHHHhh
Q 014196 274 --------AMEDSPLV--------PESLIEILTWEEKPKCQELSAYILMILAHQS----SEQRDKMAKSGIVHVSLQLAL 333 (429)
Q Consensus 274 --------~i~~~~~i--------~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~----~~~~~~i~~~G~v~~L~~ll~ 333 (429)
.....+|+ ++.|+.+|....++..+|+|+++|.+||.+. ...+..+.++|++|.|+.|+.
T Consensus 286 ~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~ 365 (584)
T 3l6x_A 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT 365 (584)
T ss_dssp ----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG
T ss_pred cccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc
Confidence 01122333 2357888864568999999999999999764 234555666799999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccc
Q 014196 334 LGSPLAQRRASKLLQWFKDERQ 355 (429)
Q Consensus 334 ~~~~~~k~~A~~lL~~l~~~~~ 355 (429)
.+++.+++.|+|+|++|...++
T Consensus 366 s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 366 NEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHHHHHHHhCChh
Confidence 9999999999999999998653
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-31 Score=274.35 Aligned_cols=318 Identities=19% Similarity=0.187 Sum_probs=267.9
Q ss_pred hhHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc
Q 014196 69 DDCVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 69 ~~~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
.+.+.+|.||+.|+.. ++..|..|+++|.+++..++++++.+++.|+||.|+.+|.+++.++++.|+|+|+||+.+++.
T Consensus 97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 3567899999999754 689999999999999999999999999999999999999999999999999999999998877
Q ss_pred hHHHHHhcCccchhhhhccCCC-----HHHHHHHHHHHHHhhccCCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHH
Q 014196 148 NKAIMVEAGILTKLPKNVDAVD-----ESTRHEFGELLLSLSSLANTHIPLS-SSEILPFLVGILESGSSVETKELCIGA 221 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~a 221 (429)
++..+++.|++++|+.++...+ ....+.++++|.+++........+. ..|++|.|+++|.+++. +++..|+++
T Consensus 177 ~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~A~~a 255 (510)
T 3ul1_B 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWA 255 (510)
T ss_dssp HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCH-HHHHHHHHH
Confidence 7999999999999999998765 3456788899999997765554443 46899999999999887 799999999
Q ss_pred HHHhccCCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHH
Q 014196 222 LYNLSAVLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQ 298 (429)
Q Consensus 222 L~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~ 298 (429)
|.+|+.++.+. ..+++.|+++.|+.+|.+.+ .++..++.+|.+++. +++.+..+.+.|+++ .|+.+|. +.++..+
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~-~L~~LL~-~~~~~v~ 333 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA-VFPSLLT-NPKTNIQ 333 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG-GCC-CTT-CSSHHHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH-HHHHHhc-CCCHHHH
Confidence 99999877655 66788999999999998876 899999999999987 567788888988876 8999998 7889999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc---ccC-CCCCCCCCcccc----c
Q 014196 299 ELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER---QAK-MGPHSGPQTRRV----S 370 (429)
Q Consensus 299 e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~---~~~-~~~~~~~~~~~~----~ 370 (429)
+.|+++|.+|+.++++.++.+.+.|++|.|+.++.+++..+|+.|+|+|.++.... +.. .. ..+.+ .
T Consensus 334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~-----~~g~i~~L~~ 408 (510)
T 3ul1_B 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLV-----HCGIIEPLMN 408 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHH-----HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHH-----HCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987532 110 00 01111 2
Q ss_pred cCCCCChhhhHHHHHHHHHHHHHH
Q 014196 371 IGSPVSPREAQEGKKMMKNLVQQS 394 (429)
Q Consensus 371 ~~~~~~~~~~~~~k~~l~~~~~~~ 394 (429)
+....+.+....+-.+|.+|++..
T Consensus 409 LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 409 LLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHh
Confidence 222334566777777888888754
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-31 Score=283.94 Aligned_cols=317 Identities=15% Similarity=0.135 Sum_probs=264.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch-----------------------------HHH---HHHHhcCcHH
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV-----------------------------KIK---KLMAELGVIQ 117 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-----------------------------~~r---~~i~~~G~i~ 117 (429)
+.+.+|.||..|++++...+..|+..|.+++...+ .++ +.++++|++|
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 46789999999999998999999999999997431 233 7889999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc---
Q 014196 118 MLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS--- 194 (429)
Q Consensus 118 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--- 194 (429)
+||.+|.++++.+|+.|+|+|.||+.+. +++..|+++|++|+|+.+|.+++...++.|+++|.+|+...+....+.
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~ 577 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLK-ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQR 577 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchh
Confidence 9999999999999999999999999875 699999999999999999999999999999999999997654433332
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC-CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcH
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALYNLSAVL-DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGK 272 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~ 272 (429)
..|++|+|+.+|.++.....+..|+++|.||+.++ +++..++++|++|.|+.+|.+.+ .+++.|+.+|.||+.+++.+
T Consensus 578 ~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~ 657 (810)
T 3now_A 578 SLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI 657 (810)
T ss_dssp HHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH
T ss_pred hhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH
Confidence 24699999999987644344568999999999975 67889999999999999998765 89999999999999999999
Q ss_pred HHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHh-CCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 273 KAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAK-SGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 273 ~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~-~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
..+....+..+.|+.++. +.+...++.|+++|.+|+.+++...+.+++ +|++|+|+.++.+++.++|+.|+|+|.++.
T Consensus 658 ~~~v~~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 658 KMFEGNNDRVKFLALLCE-DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHSSSSHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888853344569999998 788999999999999999977888889998 899999999999999999999999999987
Q ss_pred hcc--ccC-CCCCCCCCcccc----ccC-CC--CChhhhHHHHHHHHHHHHH
Q 014196 352 DER--QAK-MGPHSGPQTRRV----SIG-SP--VSPREAQEGKKMMKNLVQQ 393 (429)
Q Consensus 352 ~~~--~~~-~~~~~~~~~~~~----~~~-~~--~~~~~~~~~k~~l~~~~~~ 393 (429)
... +.+ .. ..+.+ .+. .. .+.+..+.+.++|+.+++.
T Consensus 737 ~~s~e~~~~l~-----e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 737 NAGEEIAKKLF-----ETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp TTCHHHHHHHH-----TSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-----HCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 532 111 00 11112 221 12 2566778888899988874
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-31 Score=272.38 Aligned_cols=318 Identities=19% Similarity=0.186 Sum_probs=268.6
Q ss_pred hhHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc
Q 014196 69 DDCVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 69 ~~~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
.+.+.+|.||+.|... ++..|..|+++|.+++.++++++..+++.|+||.|+.+|.+++.++++.|+|+|+||+.+++.
T Consensus 116 i~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 116 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp HHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 3567899999999754 689999999999999999999999999999999999999999999999999999999998877
Q ss_pred hHHHHHhcCccchhhhhccCCC-----HHHHHHHHHHHHHhhccCCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHH
Q 014196 148 NKAIMVEAGILTKLPKNVDAVD-----ESTRHEFGELLLSLSSLANTHIPLS-SSEILPFLVGILESGSSVETKELCIGA 221 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~a 221 (429)
++..+++.|++++|+.+|...+ ....+.++++|.+++........+. ..|++|.|+++|.+++. +++.+|+++
T Consensus 196 ~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~-~v~~~a~~a 274 (529)
T 3tpo_A 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWA 274 (529)
T ss_dssp HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH-HHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH-HHHHHHHHH
Confidence 8999999999999999998655 3457788899999997765544443 47899999999999987 799999999
Q ss_pred HHHhccCCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHH
Q 014196 222 LYNLSAVLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQ 298 (429)
Q Consensus 222 L~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~ 298 (429)
|.+|+.++.+. ..+++.|++|.|+.+|.+.+ .++..++.+|.+++. +++.+..+.+.|+++ .|+.+|. ++++..+
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~-~L~~LL~-~~~~~i~ 352 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA-VFPSLLT-NPKTNIQ 352 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG-GHHHHTT-CSSHHHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHH-HHHHHHc-CCCHHHH
Confidence 99999877655 66788999999999999876 899999999999987 577788889988886 8999998 7899999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc---ccC-CCCCCCCCcccc----c
Q 014196 299 ELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER---QAK-MGPHSGPQTRRV----S 370 (429)
Q Consensus 299 e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~---~~~-~~~~~~~~~~~~----~ 370 (429)
+.|+++|.+|+.+++..+..+++.|++|.|+.++.+++..+++.|+|+|.++...+ +.+ .. ..+.+ .
T Consensus 353 ~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~-----~~g~i~~L~~ 427 (529)
T 3tpo_A 353 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLV-----HCGIIEPLMN 427 (529)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-----HTTCHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHH-----HCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987532 110 00 01111 2
Q ss_pred cCCCCChhhhHHHHHHHHHHHHHH
Q 014196 371 IGSPVSPREAQEGKKMMKNLVQQS 394 (429)
Q Consensus 371 ~~~~~~~~~~~~~k~~l~~~~~~~ 394 (429)
+....+.+...-+=.+|.+|++..
T Consensus 428 LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 428 LLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHh
Confidence 222334556666777888887643
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-31 Score=268.96 Aligned_cols=282 Identities=17% Similarity=0.131 Sum_probs=240.4
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCCc
Q 014196 69 DDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS-TEVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 69 ~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
.+.+.++.||+.|.++++..+..|+++|++++.+++++|..+++.|+||+|+.+|. ++++++++.|+|+|.||+.++ +
T Consensus 41 ~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~ 119 (457)
T 1xm9_A 41 YQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-E 119 (457)
T ss_dssp HHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-S
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-H
Confidence 34578999999999999999999999999999987899999999999999999999 889999999999999999995 6
Q ss_pred hHHHHHhcCccchhhhhcc--------CC--------CHHHHHHHHHHHHHhhccCCCccccccC-CcHHHHHHhhhcC-
Q 014196 148 NKAIMVEAGILTKLPKNVD--------AV--------DESTRHEFGELLLSLSSLANTHIPLSSS-EILPFLVGILESG- 209 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~--------~~--------~~~~~~~aa~~L~~Ls~~~~~~~~i~~~-g~i~~Lv~lL~~~- 209 (429)
+|..|++ |++|+|+.+|. +. +.+..+.|+++|++|+..++++..+.+. |++|+|+.+|.++
T Consensus 120 ~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 198 (457)
T 1xm9_A 120 LKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCV 198 (457)
T ss_dssp THHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred hHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 9999999 99999999992 22 2445569999999999887778888887 9999999888741
Q ss_pred -----C--------------------------------------------------------------------------
Q 014196 210 -----S-------------------------------------------------------------------------- 210 (429)
Q Consensus 210 -----~-------------------------------------------------------------------------- 210 (429)
+
T Consensus 199 ~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (457)
T 1xm9_A 199 AASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGW 278 (457)
T ss_dssp HHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGG
T ss_pred cccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHH
Confidence 1
Q ss_pred ------------------cHHHHHHHHHHHHHhccCCCCh-----h-HHHhcCcHHHHHHhccCCc-chHHHHHHHHHHh
Q 014196 211 ------------------SVETKELCIGALYNLSAVLDNA-----R-PMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNL 265 (429)
Q Consensus 211 ------------------~~~~~~~A~~aL~nLs~~~~n~-----~-~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~L 265 (429)
.+..++.|+++|+||+...... + .+.+.|++|.|+.+|.+.+ ++++.|+.+|.||
T Consensus 279 l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 279 LYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358 (457)
T ss_dssp GGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHH
Confidence 1245667889999999765432 2 2346899999999999876 8999999999999
Q ss_pred hCChhcHHHHhcCCCChHHHHHhcccCCC------hhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC-CHH
Q 014196 266 VVTSTGKKAMEDSPLVPESLIEILTWEEK------PKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG-SPL 338 (429)
Q Consensus 266 a~~~e~~~~i~~~~~i~~~Lv~~L~~~~s------~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~-~~~ 338 (429)
+.+++.+..|.. +++ +.|+++|. .++ +.....++++|.++..+++++...+.+.|++++|+.++.++ +++
T Consensus 359 s~~~~~~~~i~~-~~i-~~Lv~lL~-~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~ 435 (457)
T 1xm9_A 359 SRHPLLHRVMGN-QVF-PEVTRLLT-SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPK 435 (457)
T ss_dssp HTSGGGHHHHHH-HTH-HHHHHTTT-SCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHH
T ss_pred hcCHHHHHHHHH-hhh-HHHHHhcc-CCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHH
Confidence 999888888776 666 48999998 443 25677889999999888888999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhccc
Q 014196 339 AQRRASKLLQWFKDERQ 355 (429)
Q Consensus 339 ~k~~A~~lL~~l~~~~~ 355 (429)
++++|+|+|.++..+.+
T Consensus 436 i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 436 AAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHHcchh
Confidence 99999999999886543
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=268.81 Aligned_cols=316 Identities=17% Similarity=0.131 Sum_probs=256.4
Q ss_pred hHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcH----------HHHHHhhcCCC
Q 014196 70 DCVLLQKSVKRLHFG------------SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVI----------QMLVSMVSTEV 127 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~------------~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i----------~~Lv~lL~s~~ 127 (429)
..+.+|.||+.|+.. +++.+.+|+++|.+++...++......+.|++ +.+++++.+..
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 456789999999963 37999999999999999888888888888888 77788887652
Q ss_pred --HH-----HHH-------HHHHHHHHhccCCCchHHHHHhcCccchhhhhccC-----------CCHHHHHHHHHHHHH
Q 014196 128 --IG-----RRR-------AAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDA-----------VDESTRHEFGELLLS 182 (429)
Q Consensus 128 --~~-----~~~-------~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~-----------~~~~~~~~aa~~L~~ 182 (429)
.+ +++ .|+|+|.|++.+. +||..|++.|++++|+.+|.. .+.+.+++|+++|.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 22 444 8999999999885 799999999999999999942 125678999999999
Q ss_pred hhccCC-Cccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC--CCChhHHHhcCcHHHHHHhccC-Cc-chHH
Q 014196 183 LSSLAN-THIPLS-SSEILPFLVGILESGSSVETKELCIGALYNLSAV--LDNARPMVSNGVVHTLLKLCSM-KE-RLSE 256 (429)
Q Consensus 183 Ls~~~~-~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~--~~n~~~iv~~G~v~~Lv~lL~~-~~-~~~~ 256 (429)
|+..++ ++..+. ..|+||.|+++|.+++. +++..|+++|+||+.. ++|+..++++|+||+|+.+|.. .+ .+++
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~-~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~ 305 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLK 305 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCH-HHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHHhCCCH-HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHH
Confidence 998764 566665 45679999999999887 7999999999999985 4678999999999999997543 34 8899
Q ss_pred HHHHHHHHhhC-ChhcHHHHh-cCCCChHHHHHhcccCCCh----hHHHHHHHHHHHHhh---CCHHHHHHHHhCCchHH
Q 014196 257 KSLATLGNLVV-TSTGKKAME-DSPLVPESLIEILTWEEKP----KCQELSAYILMILAH---QSSEQRDKMAKSGIVHV 327 (429)
Q Consensus 257 ~a~~~L~~La~-~~e~~~~i~-~~~~i~~~Lv~~L~~~~s~----~~~e~A~~~L~~L~~---~~~~~~~~i~~~G~v~~ 327 (429)
.++.+|+||+. +++++..|+ ..|++ +.|+++|. ++++ ..++.|+++|.+|+. .++++++.+++.|++|.
T Consensus 306 ~A~~aL~nLs~~~~~nk~~I~~~~Gal-~~Lv~LL~-~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~ 383 (458)
T 3nmz_A 306 SVLSALWNLSAHCTENKADICAVDGAL-AFLVGTLT-YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 383 (458)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSTTHH-HHHHHHTT-CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHhcCcH-HHHHHHhc-CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHH
Confidence 99999999999 888999998 55665 59999998 4443 489999999999997 67899999999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHh-ccccCCCCCCCCCcccc----ccCCCCChhhhHHHHHHHHHHHH
Q 014196 328 SLQLALLGSPLAQRRASKLLQWFKD-ERQAKMGPHSGPQTRRV----SIGSPVSPREAQEGKKMMKNLVQ 392 (429)
Q Consensus 328 L~~ll~~~~~~~k~~A~~lL~~l~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~k~~l~~~~~ 392 (429)
|+.++.+++..+++.|+|+|.++.. .++.+.. .-..+.+ .+...++++.++.|..+|.+|..
T Consensus 384 Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~---i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 384 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA---LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHH---HHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHH---HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999983 3321100 0011122 33444577888899999998875
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=268.92 Aligned_cols=319 Identities=15% Similarity=0.116 Sum_probs=261.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHh-hhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLA-KEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La-~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
++.+|+.|.++|.+.|..|+..+|.+. ++.....+.+++.|+||+||.+|++ +++.+|..|+|+|.||+.++++++..
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 899999999999999999999999865 4333346889999999999999975 56899999999999999988778999
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCc----HHHHHHHHHHHHHhc
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSS----VETKELCIGALYNLS 226 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~~A~~aL~nLs 226 (429)
|+++|+||.|+.+|.+++.++++.|+++|++|+.+. .++..+.+.|++++|+.+|...+. ....+.++++|.|++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999764 567778899999999999987542 246778999999999
Q ss_pred cCCCChhH-HHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChh-cHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 227 AVLDNARP-MVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTST-GKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 227 ~~~~n~~~-iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e-~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
.+..+... ....|++|.|+.+|.+.+ +++..++.+|.+|+..++ ..+.+.+.|++ +.|+++|. +.+...+..++.
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i-~~Lv~lL~-~~~~~v~~~al~ 296 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV-PQLVKLLG-ATELPIVTPALR 296 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCH-HHHHHHHT-CSCHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccc-hhhhhhhc-CCChhhhhHHHH
Confidence 98766644 444689999999998776 899999999999998654 45556665555 59999998 789999999999
Q ss_pred HHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--ccCCCCCCCCCccc-cccCCCCChhhh
Q 014196 304 ILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER--QAKMGPHSGPQTRR-VSIGSPVSPREA 380 (429)
Q Consensus 304 ~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~ 380 (429)
+|++++.+++..+..+++.|+++.|+.++.++++.+++.|+|+|.++.... +.......+ .... +.....++.+.+
T Consensus 297 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g-~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT-HHHHHHHHHHSSCHHHH
T ss_pred HHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC-CHHHHHHHHcCCCHHHH
Confidence 999999999999999999999999999999999999999999999997532 110000000 0000 122234467888
Q ss_pred HHHHHHHHHHHHHHH
Q 014196 381 QEGKKMMKNLVQQSL 395 (429)
Q Consensus 381 ~~~k~~l~~~~~~~~ 395 (429)
.+|-.+|.++...+.
T Consensus 376 ~~Aa~aL~Nl~~~~~ 390 (510)
T 3ul1_B 376 KEAAWAITNYTSGGT 390 (510)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHccCC
Confidence 889999998876443
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-31 Score=258.66 Aligned_cols=243 Identities=22% Similarity=0.197 Sum_probs=213.9
Q ss_pred hHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHH
Q 014196 70 DCVLLQKSVKRLHF-----------GSWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVSMVSTEVIGRRRAAIKA 137 (429)
Q Consensus 70 ~~~~l~~lv~~L~~-----------~~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~A~~a 137 (429)
+.++++.|+..|.. .++..|..|+++|++++..++.+|..+.. .|+||+||.+|+++++++++.|+++
T Consensus 71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 150 (354)
T 3nmw_A 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150 (354)
T ss_dssp HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHH
Confidence 45678999999852 24678999999999999988889988875 5669999999999999999999999
Q ss_pred HHHhccC-CCchHHHHHhcCccchhhhhc-cCCCHHHHHHHHHHHHHhhc-cCCCccccc-cCCcHHHHHHhhhcCCcH-
Q 014196 138 LIQLANG-TYTNKAIMVEAGILTKLPKNV-DAVDESTRHEFGELLLSLSS-LANTHIPLS-SSEILPFLVGILESGSSV- 212 (429)
Q Consensus 138 L~nLa~~-~~~nk~~iv~~G~i~~Lv~lL-~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~-~~g~i~~Lv~lL~~~~~~- 212 (429)
|.||+.+ ++.||..|++.|+||+|+.+| .+.+.+.++.++.+|++|+. .++++..|. ..|+||.|+++|.+++..
T Consensus 151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~ 230 (354)
T 3nmw_A 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 230 (354)
T ss_dssp HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence 9999986 446899999999999999975 56778899999999999998 557888888 799999999999987542
Q ss_pred --HHHHHHHHHHHHhcc----CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHH
Q 014196 213 --ETKELCIGALYNLSA----VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPES 284 (429)
Q Consensus 213 --~~~~~A~~aL~nLs~----~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~ 284 (429)
++++.|+++|+||+. .++++..++++|++|+|+.+|.+.+ .+++.|+.+|.||+. +++.++.+.+.|+++ .
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~-~ 309 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS-M 309 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHH-H
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHH-H
Confidence 488999999999996 7788899999999999999999776 899999999999995 799999999988876 8
Q ss_pred HHHhcccCCChhHHHHHHHHHHHHhhCCHH
Q 014196 285 LIEILTWEEKPKCQELSAYILMILAHQSSE 314 (429)
Q Consensus 285 Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~ 314 (429)
|+++|. ++++..++.|+++|.+|+.+.+.
T Consensus 310 Lv~LL~-s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 310 LKNLIH-SKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHTTTT-CSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHh-CCCHHHHHHHHHHHHHHHcCCHH
Confidence 999998 78999999999999999987543
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=260.18 Aligned_cols=278 Identities=17% Similarity=0.121 Sum_probs=226.7
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCc
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
+.+.|+.||+.|.+++.+.|..|+.+|++|+.+ ++++|..|+++|+||+||.+|.+ .+.++++.|+++|+||+.++ .
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~ 166 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-S 166 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-G
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-h
Confidence 456899999999999999999999999999985 68999999999999999999997 67899999999999999976 7
Q ss_pred hHHHHHhcCccchhhhhcc------------------CCCHHHHHHHHHHHHHhhccCC-Ccccccc-CCcHHHHHHhhh
Q 014196 148 NKAIMVEAGILTKLPKNVD------------------AVDESTRHEFGELLLSLSSLAN-THIPLSS-SEILPFLVGILE 207 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~------------------~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~-~g~i~~Lv~lL~ 207 (429)
||..|++ |+||+|+.++. ..+.+++++|+++|.|||..++ ++..|.+ .|+++.||.+|+
T Consensus 167 ~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~ 245 (584)
T 3l6x_A 167 IKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQ 245 (584)
T ss_dssp GHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred hhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999996 57999999872 1235778889999999987653 3555554 455566666654
Q ss_pred c-------------------------------------------------------------------------CCcHHH
Q 014196 208 S-------------------------------------------------------------------------GSSVET 214 (429)
Q Consensus 208 ~-------------------------------------------------------------------------~~~~~~ 214 (429)
+ +....+
T Consensus 246 ~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v 325 (584)
T 3l6x_A 246 AEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325 (584)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHH
T ss_pred HhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHH
Confidence 2 212244
Q ss_pred HHHHHHHHHHhccCCC-----ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHh
Q 014196 215 KELCIGALYNLSAVLD-----NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEI 288 (429)
Q Consensus 215 ~~~A~~aL~nLs~~~~-----n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~ 288 (429)
+++|++||.|||.... ++..+.+.|++|.|+.||...+ .+++.|+.+|.||+.++..+..| ..|+++ .||++
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip-~LV~L 403 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIP-NLVKN 403 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHH-HHHHH
Confidence 5566666666655431 2224455799999999998775 99999999999999998888877 447665 89999
Q ss_pred cccCC--------ChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHHHh
Q 014196 289 LTWEE--------KPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG--SPLAQRRASKLLQWFKD 352 (429)
Q Consensus 289 L~~~~--------s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~--~~~~k~~A~~lL~~l~~ 352 (429)
|. ++ +......|+++|.+|+..++++++.+++.|++|.|+.++.++ ++.+++.|+|+|.++..
T Consensus 404 L~-~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 404 LP-GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SS-SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred hc-CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 98 44 356788999999999999999999999999999999999987 89999999999998864
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-29 Score=258.36 Aligned_cols=319 Identities=15% Similarity=0.114 Sum_probs=262.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHh-hhchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLA-KEDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La-~~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.++.+++.+.+++++.+..|+..+|.+. ++.....+.+++.|+||.||.+|.. +++.+|..|+|+|.||+.++..++.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4889999999999999999999999864 4443457889999999999999975 5689999999999999998866788
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCc----HHHHHHHHHHHHHh
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSS----VETKELCIGALYNL 225 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~~A~~aL~nL 225 (429)
.++++|+||.|+.++.+++.+.++.|+++|++|+.+. .++..+.+.|++++|+.+|...+. ....+.++++|.|+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999764 677888899999999999986542 24677899999999
Q ss_pred ccCCCChhH-HHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCCh-hcHHHHhcCCCChHHHHHhcccCCChhHHHHHH
Q 014196 226 SAVLDNARP-MVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTS-TGKKAMEDSPLVPESLIEILTWEEKPKCQELSA 302 (429)
Q Consensus 226 s~~~~n~~~-iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~-e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~ 302 (429)
+.+..+... ....|++|.|+.+|.+.+ +++..++.+|.+++..+ +..+.+...|++ +.|+++|. +.++..+..|+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i-~~Lv~lL~-~~~~~v~~~a~ 314 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVV-PQLVKLLG-ATELPIVTPAL 314 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCH-HHHHHHHT-CSCHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccch-HHHHHHhc-CCChhHHHHHH
Confidence 998766543 445789999999998776 89999999999999865 445566665555 59999998 78999999999
Q ss_pred HHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc--cCCCCCCCCCccc-cccCCCCChhh
Q 014196 303 YILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQ--AKMGPHSGPQTRR-VSIGSPVSPRE 379 (429)
Q Consensus 303 ~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 379 (429)
.+|++++.+++.....+++.|+++.|+.++.++++.+++.|+|+|.++..... .......+ .... +.+...++.+.
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g-~i~~Lv~lL~~~~~~v 393 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG-LVPFLVGVLSKADFKT 393 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT-HHHHHHHHHHSSCHHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC-cHHHHHHHhcCCCHHH
Confidence 99999999989999999999999999999999999999999999999986321 10000000 0000 12223446778
Q ss_pred hHHHHHHHHHHHHHH
Q 014196 380 AQEGKKMMKNLVQQS 394 (429)
Q Consensus 380 ~~~~k~~l~~~~~~~ 394 (429)
+..|-.+|.++...+
T Consensus 394 ~~~A~~aL~nl~~~~ 408 (529)
T 3tpo_A 394 QKAAAWAITNYTSGG 408 (529)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCC
Confidence 888888998887644
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-28 Score=251.81 Aligned_cols=319 Identities=16% Similarity=0.160 Sum_probs=271.4
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHFGS-WEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~-~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.++.|++.|.+++ +..+..|++.|.+++..+++++..+++.|++|+|+.+|.++++.+++.|+++|.||+.+++.++
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 457899999999886 9999999999999999888999999999999999999999999999999999999998876678
Q ss_pred HHHHhcCccchhhhhc-cCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 150 AIMVEAGILTKLPKNV-DAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL-~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
..+++.|++++|+.++ ...+...+..++++|.+|+............|++|.|+++|.+++. .++..|+++|.+|+..
T Consensus 196 ~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDE-EVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCH-HHHHHHHHHHHHHTSS
T ss_pred HHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHcC
Confidence 9999999999999999 5667889999999999999775444444568999999999999887 7999999999999987
Q ss_pred CCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCC-ChhHHHHHHHH
Q 014196 229 LDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEE-KPKCQELSAYI 304 (429)
Q Consensus 229 ~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~-s~~~~e~A~~~ 304 (429)
..+. ..+++.|+++.|+.+|.+++ .+++.|+.+|.+|+. +++.++.+.+.|+++ .|+++|. ++ ++..+..|+++
T Consensus 275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~-~L~~lL~-~~~~~~v~~~A~~~ 352 (528)
T 4b8j_A 275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALP-CLLSLLT-QNLKKSIKKEACWT 352 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHH-HHHHHHH-SCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHH-HHHHHHc-CCCcHHHHHHHHHH
Confidence 6655 67888999999999999876 899999999999998 577778888877665 9999998 67 89999999999
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--c-cC-C-CCCCCCCcccc-ccCCCCChh
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER--Q-AK-M-GPHSGPQTRRV-SIGSPVSPR 378 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~--~-~~-~-~~~~~~~~~~~-~~~~~~~~~ 378 (429)
|.+++.++++..+.+++.|++|.|+.++.++++.+++.|+|+|.++.... . .. . .... ...+ .+....+.+
T Consensus 353 L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~---i~~L~~lL~~~d~~ 429 (528)
T 4b8j_A 353 ISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGC---IKPLCDLLICPDIR 429 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTC---HHHHHHGGGCSCHH
T ss_pred HHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC---HHHHHHHHcCCCHH
Confidence 99999988888899999999999999999999999999999999998652 1 00 0 0000 1111 222334667
Q ss_pred hhHHHHHHHHHHHHHHH
Q 014196 379 EAQEGKKMMKNLVQQSL 395 (429)
Q Consensus 379 ~~~~~k~~l~~~~~~~~ 395 (429)
....+-.+|.+|++..-
T Consensus 430 v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 430 IVTVCLEGLENILKVGE 446 (528)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888889999987543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=246.21 Aligned_cols=317 Identities=12% Similarity=0.074 Sum_probs=264.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch-HHHHHHHhcCcHHHHHHhhcCCC-HHHHHHHHHHHHHhccCCCchH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV-KIKKLMAELGVIQMLVSMVSTEV-IGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~nk 149 (429)
..++.++..|.+++++.+..|+..|+.++.... ..+..+++.|++|.|+.+|.+++ +.++..|+++|.+++.++++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999976443 67888999999999999999987 9999999999999999876789
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
..+++.|++|.|+.+|.+.+.++++.|+++|.+|+... .++..+...|++++|+.+|.......++..|+++|.||+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999988999999999999999764 45677778999999999995443347999999999999998
Q ss_pred CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhc-HHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHH
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTG-KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~-~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~ 306 (429)
..+.......|++|.|+.+|.+.+ .++..++.+|.+|+..++. .+.+.+.|++ +.|+++|. ++++..++.|+.+|.
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v-~~Lv~lL~-~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVC-PRLVELLL-HPSPSVLIPALRTVG 311 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCH-HHHHHHTT-CSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHH-HHHHHHHc-CCChhHHHHHHHHHH
Confidence 666666677999999999998776 8999999999999986544 4677776666 59999998 788999999999999
Q ss_pred HHhhCCHHHHHHHHhCCchHHHHHHhhcC-CHHHHHHHHHHHHHHHhccc--cC--CCCCCCCCcccc-ccCCCCChhhh
Q 014196 307 ILAHQSSEQRDKMAKSGIVHVSLQLALLG-SPLAQRRASKLLQWFKDERQ--AK--MGPHSGPQTRRV-SIGSPVSPREA 380 (429)
Q Consensus 307 ~L~~~~~~~~~~i~~~G~v~~L~~ll~~~-~~~~k~~A~~lL~~l~~~~~--~~--~~~~~~~~~~~~-~~~~~~~~~~~ 380 (429)
+++.+++...+.+++.|++|.|+.++.++ ++.+++.|+|+|.++..... .. ..... ...+ .+...++.+.+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~---i~~L~~lL~~~~~~v~ 388 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGI---IGPLVNLLQTAEFDIK 388 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTC---HHHHHHHHHHSCHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC---HHHHHHHHhcCCHHHH
Confidence 99998888999999999999999999998 99999999999999985321 00 00000 1111 11122367788
Q ss_pred HHHHHHHHHHHHH
Q 014196 381 QEGKKMMKNLVQQ 393 (429)
Q Consensus 381 ~~~k~~l~~~~~~ 393 (429)
..+-.+|.++...
T Consensus 389 ~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 389 KEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 8888888888875
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=261.77 Aligned_cols=280 Identities=14% Similarity=0.111 Sum_probs=246.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+.++.||..|.++++..|..|+++|.+++. ++++|..+++.|++|+|+.+|.++++..++.|+++|.||+.+.+ ...
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~-p~~ 571 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN-PEV 571 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-HHH
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC-hhh
Confidence 3678999999999999999999999999996 56799999999999999999999999999999999999998652 222
Q ss_pred HH---HhcCccchhhhhccCCC-HHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHh
Q 014196 151 IM---VEAGILTKLPKNVDAVD-ESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNL 225 (429)
Q Consensus 151 ~i---v~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 225 (429)
.+ ...|+||+|+.+|.+.. ...+.+|+.+|.||+..+ +++..|.+.|++|.|+.+|.+++. .+++.|+++|+||
T Consensus 572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~-~Vq~~A~~~L~NL 650 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL-YLTRAAAQCLCNL 650 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCT-THHHHHHHHHHHH
T ss_pred hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHH
Confidence 21 12469999999998543 344567999999999874 667788899999999999999887 7999999999999
Q ss_pred ccCCCChhHHHh-cCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhc-CCCChHHHHHhcccCCChhHHHHH
Q 014196 226 SAVLDNARPMVS-NGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMED-SPLVPESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 226 s~~~~n~~~iv~-~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~-~~~i~~~Lv~~L~~~~s~~~~e~A 301 (429)
+.+++.+..+++ .|+++.|+.++...+ .+++.|+.+|.+|+. +++..+.+++ .|++ +.|+++|. +++...+..|
T Consensus 651 a~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I-~~Lv~LL~-s~d~~vq~~A 728 (810)
T 3now_A 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWL-DILHTLIA-NPSPAVQHRG 728 (810)
T ss_dssp TTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHH-HHHHHHHT-CSSHHHHHHH
T ss_pred hCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHC-CCCHHHHHHH
Confidence 999888888886 799999999998776 899999999999998 7888889988 6666 58999999 8999999999
Q ss_pred HHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC---CHHHHHHHHHHHHHHHhccc
Q 014196 302 AYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG---SPLAQRRASKLLQWFKDERQ 355 (429)
Q Consensus 302 ~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~---~~~~k~~A~~lL~~l~~~~~ 355 (429)
+++|.+++.++++++..+++.|++++|+.+++.. +.++.+.|...|+.+-+.+.
T Consensus 729 ~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 729 IVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp HHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 9999999988888999999999999999999754 68899999999999998765
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-27 Score=244.12 Aligned_cols=321 Identities=12% Similarity=0.097 Sum_probs=270.2
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.++.|+..|.++ ++..+..|++.|.+++..+++++..+++.|++|.|+.+|.++++.+++.|+++|.+|+.+++.++
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 45689999999987 89999999999999999888899999999999999999999999999999999999999876688
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
..+++.|+++.|+.++...+.+++..++++|.+|+... .........|++|.|+.+|.+++. .++..|+++|.+|+..
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~-~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHSS
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCH-HHHHHHHHHHHHHhCC
Confidence 99999999999999999888899999999999999765 444444568999999999999886 7999999999999976
Q ss_pred C-CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHH
Q 014196 229 L-DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYIL 305 (429)
Q Consensus 229 ~-~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L 305 (429)
. +....+++.|+++.|+.+|.+.+ .+++.|+.+|.+++. +++..+.+.+.|++ +.|+++|. ++++..++.|+++|
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l-~~L~~lL~-~~~~~vr~~A~~aL 365 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL-PALRLLLS-SPKENIKKEACWTI 365 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH-HHHHHHTT-CSCHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchH-HHHHHHHc-CCCHHHHHHHHHHH
Confidence 4 45677888999999999999776 899999999999997 56777778887666 49999998 77889999999999
Q ss_pred HHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCCCCCC--Ccccc----ccCCCCChhh
Q 014196 306 MILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGP--QTRRV----SIGSPVSPRE 379 (429)
Q Consensus 306 ~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~ 379 (429)
.+++.++++..+.+++.|++|.|+.++.++++.++..|+|+|.++...... .+.+... ..+.+ .+....+.+.
T Consensus 366 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v 444 (530)
T 1wa5_B 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQGCIKPLCDLLEIADNRI 444 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHTTCHHHHHHHTTTCCHHH
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 999988888888899999999999999999999999999999999763210 0000000 00111 2223336777
Q ss_pred hHHHHHHHHHHHHHHH
Q 014196 380 AQEGKKMMKNLVQQSL 395 (429)
Q Consensus 380 ~~~~k~~l~~~~~~~~ 395 (429)
+..+-.+|.++++.+-
T Consensus 445 ~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 445 IEVTLDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888889999988654
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=233.38 Aligned_cols=319 Identities=14% Similarity=0.144 Sum_probs=265.7
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 72 VLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 72 ~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
+.++.+++.|.++ ++..+..|+..|.+++..+++++..+++.|++|.|+.+|.++++.+++.|+++|.+++.+++.++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6799999999988 899999999999999998888888899999999999999999999999999999999998766788
Q ss_pred HHHhcCccchhhhhccC-CCHHHHHHHHHHHHHhhccC--CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 151 IMVEAGILTKLPKNVDA-VDESTRHEFGELLLSLSSLA--NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
.+++.|+++.|+.++.. .+.+.+..++.+|.+|+... ..+..+ ..+++|.|++++.+++. .++..++++|.+|+.
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~-~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDT-DVLADACWALSYLSD 221 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHTS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCH-HHHHHHHHHHHHHHC
Confidence 99999999999999985 67889999999999999664 222233 37899999999998887 799999999999998
Q ss_pred CC-CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 228 VL-DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 228 ~~-~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
+. ++...+++.|+++.|+.+|.+.+ .+++.|+.+|.+++.. ++.++.+.+.|++ +.|+++|. ++++..++.|+++
T Consensus 222 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l-~~L~~ll~-~~~~~vr~~a~~~ 299 (450)
T 2jdq_A 222 GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL-QSLLHLLS-SPKESIKKEACWT 299 (450)
T ss_dssp SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHH-HHHHHHTT-CSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccH-HHHHHHHc-CCCHHHHHHHHHH
Confidence 64 45677888999999999998776 8999999999999985 5556667776665 59999998 7889999999999
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc--c-ccCCCCCCCCCcccc-ccCCCCChhhh
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE--R-QAKMGPHSGPQTRRV-SIGSPVSPREA 380 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~~ 380 (429)
|.+++.++++..+.+++.|++|.|+.++.++++.+|..|+|+|.++... + +.+.-.+. .....+ .+....+.+.+
T Consensus 300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVEL-GCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-TCHHHHHHGGGSSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC-CCHHHHHHHhcCCCHHHH
Confidence 9999988888888899999999999999999999999999999999753 1 11000000 001111 22223367788
Q ss_pred HHHHHHHHHHHHHHH
Q 014196 381 QEGKKMMKNLVQQSL 395 (429)
Q Consensus 381 ~~~k~~l~~~~~~~~ 395 (429)
..+-.+|.+++..+-
T Consensus 379 ~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 379 QVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhch
Confidence 888889999888554
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=221.00 Aligned_cols=238 Identities=22% Similarity=0.272 Sum_probs=218.4
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc-CCCccc
Q 014196 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIP 192 (429)
Q Consensus 114 G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~ 192 (429)
|+||.|+.+|.+++++++..|+++|.+++.++++++..+++.|+++.|+.++.+.+.+.+..++.+|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 6799999999999999999999999999998766899999999999999999999999999999999999987 567788
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-CCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-Ch
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSA-VLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TS 269 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~ 269 (429)
+.+.|+++.|+.+|.+++. .++..|+++|.||+. .++++..+++.|+++.|+.+|.+.+ .++..++.+|.+|+. .+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 8899999999999998886 799999999999994 6677889999999999999999876 899999999999998 56
Q ss_pred hcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 014196 270 TGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQW 349 (429)
Q Consensus 270 e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~ 349 (429)
+.+..+.+.|++ +.|++++. ++++..++.|+++|.+++..+++.++.+.+.|+++.|+.++.++++.+++.|.|+|.+
T Consensus 161 ~~~~~~~~~~~i-~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 161 EAIKAIVDAGGV-EVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHTTHH-HHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCH-HHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 666788887766 49999998 7889999999999999999888999999999999999999999999999999999999
Q ss_pred HHhcc
Q 014196 350 FKDER 354 (429)
Q Consensus 350 l~~~~ 354 (429)
+....
T Consensus 239 l~~~~ 243 (252)
T 4hxt_A 239 IKSGG 243 (252)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 99854
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=222.09 Aligned_cols=235 Identities=20% Similarity=0.248 Sum_probs=213.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
..+.+++.|.+++++.+..|+..|+++...++.++..+.+.|++|.|+.+|.++++.++..|+++|.+++.++++++..+
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 38899999999999999999999987666677889999999999999999999999999999999999999776789999
Q ss_pred HhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCc-cccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC-C
Q 014196 153 VEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH-IPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL-D 230 (429)
Q Consensus 153 v~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~ 230 (429)
++.|+++.|+.++++.+.+.++.++.+|.+|+..+..+ ..+.+.|++|.|+++|.+++. .++..|+++|.||+... +
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999999999999999888777 677799999999999999887 79999999999999854 5
Q ss_pred ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHH
Q 014196 231 NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMIL 308 (429)
Q Consensus 231 n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L 308 (429)
+...+++.|+++.|+.+|.+++ .+++.|+.+|.+|+. +++.+..+.+.|+++ .|++++. ++++..++.|+++|.+|
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~-~L~~ll~-~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALE-KLEQLQS-HENEKIQKEAQEALEKL 249 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH-HHHTTTT-CSSSHHHHTHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH-HHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 5678889999999999999876 899999999999996 678888888877765 8999998 78999999999999998
Q ss_pred hh
Q 014196 309 AH 310 (429)
Q Consensus 309 ~~ 310 (429)
+.
T Consensus 250 ~~ 251 (252)
T 4db8_A 250 QS 251 (252)
T ss_dssp C-
T ss_pred hc
Confidence 74
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=238.79 Aligned_cols=316 Identities=14% Similarity=0.084 Sum_probs=264.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCCCchHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVKIKKLMAELGVIQMLVSMVSTE-VIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.++.++..|.+++++.+..|+..|+.+... +...+..+++.|++|.|+.+|.++ ++.++..|+++|.+++.+++.++.
T Consensus 88 ~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 88 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 489999999999999999999999998653 244667888999999999999997 899999999999999998766788
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
.+++.|+++.|+.+|.+.+.++++.|+++|.+|+... .++..+...|+++.|+.++.+.+. .++..|+++|.||+.+.
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH-HHHHHHHHHHHHHHCCS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCH-HHHHHHHHHHHHHhCCC
Confidence 8999999999999999989999999999999999764 566677788999999999998766 79999999999999876
Q ss_pred -CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHH
Q 014196 230 -DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306 (429)
Q Consensus 230 -~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~ 306 (429)
.+.......|++|.|+.+|.+.+ .++..++.+|.+|+.. ++....+.+.|++ +.|+++|. +.++..++.|+.+|.
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v-~~Lv~lL~-~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP-KRLVELLS-HESTLVQTPALRAVG 324 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH-HHHHHGGG-CSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcH-HHHHHHHC-CCChhhHHHHHHHHH
Confidence 56667777899999999998876 8999999999999974 6777888886666 59999998 788999999999999
Q ss_pred HHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--ccC--CCCCCCCCccccccCCCCChhhhHH
Q 014196 307 ILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER--QAK--MGPHSGPQTRRVSIGSPVSPREAQE 382 (429)
Q Consensus 307 ~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (429)
+++.+++...+.+++.|++|.|+.++.++++.+++.|+|+|.++.... +.+ ......|.+. .....++.+.+..
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~--~lL~~~~~~v~~~ 402 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV--KLLEVAEYKTKKE 402 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH--HHHHHSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH--HHHhcCCHHHHHH
Confidence 999988888889999999999999999999999999999999998522 110 0000101110 1122335677888
Q ss_pred HHHHHHHHHHH
Q 014196 383 GKKMMKNLVQQ 393 (429)
Q Consensus 383 ~k~~l~~~~~~ 393 (429)
+-.+|.++...
T Consensus 403 a~~aL~~l~~~ 413 (530)
T 1wa5_B 403 ACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 88888888764
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-27 Score=216.84 Aligned_cols=236 Identities=22% Similarity=0.279 Sum_probs=216.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
.++.+++.|.+++++.+..|+..|.+++..+++++..+.+.|+++.|+.+|.++++++++.|+++|.+|+.+++.++..+
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 58999999999999999999999999999888899999999999999999999999999999999999999966789999
Q ss_pred HhcCccchhhhhccCCCHHHHHHHHHHHHHhhc-cCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC-
Q 014196 153 VEAGILTKLPKNVDAVDESTRHEFGELLLSLSS-LANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD- 230 (429)
Q Consensus 153 v~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~- 230 (429)
++.|+++.|+.++.+.+.+.+..++.+|.+|+. .++++..+.+.|+++.|++++.+++. .++..|+++|.||+...+
T Consensus 83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCHH
Confidence 999999999999999889999999999999994 45677778889999999999999887 799999999999998654
Q ss_pred ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHH
Q 014196 231 NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMIL 308 (429)
Q Consensus 231 n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L 308 (429)
++..+++.|+++.|+.+|.+++ .+++.++.+|.+|+. +++.++.+.+.|+++ .|++++. ++++..++.|+++|.+|
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~-~L~~ll~-~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVE-VLQKLLT-STDSEVQKEAQRALENI 239 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHH-HHHHGGG-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH-HHHHHHC-CCcHHHHHHHHHHHHHH
Confidence 4478999999999999999776 899999999999998 677888888877765 9999998 78899999999999999
Q ss_pred hhC
Q 014196 309 AHQ 311 (429)
Q Consensus 309 ~~~ 311 (429)
+..
T Consensus 240 ~~~ 242 (252)
T 4hxt_A 240 KSG 242 (252)
T ss_dssp HHT
T ss_pred HcC
Confidence 974
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=218.30 Aligned_cols=236 Identities=17% Similarity=0.240 Sum_probs=213.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhc-cCCCccc
Q 014196 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSS-LANTHIP 192 (429)
Q Consensus 114 G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~-~~~~~~~ 192 (429)
...+.++.+|.++|++++..|+++|.++...++.++..+++.|+++.|+.+|++.+.+.+..++.+|.+|+. .++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 458999999999999999999999987655444688899999999999999999889999999999999997 4567788
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-Ch
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TS 269 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~ 269 (429)
+.+.|++|.|+++|.+++. .++..|+++|.||+.+++++ ..+++.|++|.|+.+|.+.+ .+++.++.+|.+|+. .+
T Consensus 92 i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCCCH-HHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 8899999999999999886 79999999999999998888 88999999999999998876 899999999999998 56
Q ss_pred hcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHH
Q 014196 270 TGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQW 349 (429)
Q Consensus 270 e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~ 349 (429)
+.+..+.+.|+++ .|+++|. ++++..++.|+++|.+++..+++.++.+.+.|+++.|+.++.++++.+++.|+|+|.+
T Consensus 171 ~~~~~~~~~~~i~-~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 171 EQIQAVIDAGALP-ALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHTTCHH-HHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred HHHHHHHHCCCHH-HHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7777888877665 9999998 7889999999999999998889999999999999999999999999999999999988
Q ss_pred HHh
Q 014196 350 FKD 352 (429)
Q Consensus 350 l~~ 352 (429)
+..
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 753
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=236.30 Aligned_cols=277 Identities=18% Similarity=0.094 Sum_probs=244.8
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.++.+++.|.++ +++.+..|+..|++++.+ ++++..+.+.|++|.|+.+|.++++.++..|+++|.||+.+++.++
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 46799999999865 899999999999999975 4699999999999999999999999999999999999999875678
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc-CCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
..+++.|++|.|+.++.+.+.+.+..++.+|.+++.. ++++..+.+.|+++.|+++|++++....+..++.+|.||+.+
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 8899999999999999998888888888999999975 467778888899999999999987766777889999999999
Q ss_pred CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHH
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMI 307 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~ 307 (429)
++++..+++.|+++.|+.++.+.+ .+++.++.+|.+|+........ . .++++.|++++. +.++..++.|+++|.+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~--~-~~~i~~L~~ll~-~~~~~v~~~a~~~L~~ 292 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG--M-EGLLGTLVQLLG-SDDINVVTCAAGILSN 292 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSC--C-HHHHHHHHHHTT-CSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHH--H-HhHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 999999999999999999998776 8899999999999985432211 1 234468999998 7899999999999999
Q ss_pred HhhCCHHHHHHHHhCCchHHHHHHhhcC--CHHHHHHHHHHHHHHHh
Q 014196 308 LAHQSSEQRDKMAKSGIVHVSLQLALLG--SPLAQRRASKLLQWFKD 352 (429)
Q Consensus 308 L~~~~~~~~~~i~~~G~v~~L~~ll~~~--~~~~k~~A~~lL~~l~~ 352 (429)
++.++++.++.+.+.|+++.|+.++... ++.++..|.++|+++..
T Consensus 293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 9998888999999999999999999863 37899999999999874
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-27 Score=217.18 Aligned_cols=195 Identities=22% Similarity=0.220 Sum_probs=173.8
Q ss_pred HHHHHHHHhcCCCH--HHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 73 LLQKSVKRLHFGSW--EEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 73 ~l~~lv~~L~~~~~--~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.++.+|+.|.++++ +.|..|+..|++++.+++.+|..+++.|+||+||.+|+++++++|+.|+++|.||+.++++||.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 38999999999987 8889999999999999999999999999999999999999999999999999999997667999
Q ss_pred HHHhcCccchhhhhcc-CCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhh---cCC------------cHHH
Q 014196 151 IMVEAGILTKLPKNVD-AVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILE---SGS------------SVET 214 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~---~~~------------~~~~ 214 (429)
.|+++|+||+|+.+|. +++.+.+++++.+||+||..+.++..|.+ ++||+|+.++. +|. ...+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 57889999999999999999999998886 47999999763 221 2378
Q ss_pred HHHHHHHHHHhccC-CCChhHHHhc-CcHHHHHHhccC------Cc-chHHHHHHHHHHhhCC
Q 014196 215 KELCIGALYNLSAV-LDNARPMVSN-GVVHTLLKLCSM------KE-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 215 ~~~A~~aL~nLs~~-~~n~~~iv~~-G~v~~Lv~lL~~------~~-~~~~~a~~~L~~La~~ 268 (429)
+++|..+|+||+.. ++++..|.+. |+|+.|+.+++. .+ ..+|.|+.+|+||+..
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999985 5889999986 778999999873 13 7899999999999864
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-26 Score=240.19 Aligned_cols=277 Identities=18% Similarity=0.101 Sum_probs=244.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.++.+++.|.++ +++.+..|+..|+.++.++ +++..+.+.|+++.|+.+|.++++.++..|+++|.||+.+++.++
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 46799999999876 8899999999999999864 699999999999999999999999999999999999998875678
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhc-cCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSS-LANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
..+++.|++|.|+.+|.+.+...+..++.+|.+|+. +++++..+.+.|+++.|+++|++++....+..++.+|+||+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 889999999999999998887777777889999996 5577888889999999999999887667888999999999999
Q ss_pred CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHH
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMI 307 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~ 307 (429)
++++..+++.|+++.|+.++.+.+ .+++.++.+|.+|+...... ... .++++.|+++|. +.++..++.|+++|.+
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~-~~~i~~Lv~lL~-~~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLG-SDDINVVTCAAGILSN 289 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSC-HHHHHHHHHHTT-CSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhh-hhHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 999999999999999999998765 89999999999999743221 111 134468999998 7889999999999999
Q ss_pred HhhCCHHHHHHHHhCCchHHHHHHhhc-CC-HHHHHHHHHHHHHHHh
Q 014196 308 LAHQSSEQRDKMAKSGIVHVSLQLALL-GS-PLAQRRASKLLQWFKD 352 (429)
Q Consensus 308 L~~~~~~~~~~i~~~G~v~~L~~ll~~-~~-~~~k~~A~~lL~~l~~ 352 (429)
|+..+++.++.+.+.|+++.|+.++.. ++ +.++..|.++|+++..
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 999888999999999999999999987 33 7999999999999964
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-24 Score=220.10 Aligned_cols=315 Identities=15% Similarity=0.113 Sum_probs=254.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhh--hchHHHHHHHhc-CcHHHHHHhhcCC-CHHHHHHHHHHHHHhccCCCch
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAK--EDVKIKKLMAEL-GVIQMLVSMVSTE-VIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~--~~~~~r~~i~~~-G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~~~~~n 148 (429)
.++.+++.|.++++..+..|+..|+.+.. .++.. ..+.+. |++|.|+.+|.++ ++.++..|+++|.+++.++.++
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 37889999999999999999999999754 34344 446666 9999999999998 8999999999999999976567
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
...+++.|++|.|+.++.+.+.+.++.++.+|.+++... .++..+.+.|+++.|++++.++....++..|+++|.||+.
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 778889999999999999988999999999999999765 4566677889999999999964334799999999999997
Q ss_pred CC--CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHH
Q 014196 228 VL--DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAY 303 (429)
Q Consensus 228 ~~--~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~ 303 (429)
.. .....++ .|++|.|+.++.+.+ .++..++.+|.+|+.. ++.+..+...|.+ +.|+++|. +.++..++.|+.
T Consensus 180 ~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i-~~L~~ll~-~~~~~v~~~a~~ 256 (450)
T 2jdq_A 180 GKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC-RRLVELLM-HNDYKVVSPALR 256 (450)
T ss_dssp CSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTH-HHHHHHTT-CSCHHHHHHHHH
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcH-HHHHHHHC-CCchhHHHHHHH
Confidence 64 3334444 899999999998776 8899999999999984 5677777776665 59999998 788999999999
Q ss_pred HHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-c-cC--CCCCCCCCccccccCCCCChhh
Q 014196 304 ILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER-Q-AK--MGPHSGPQTRRVSIGSPVSPRE 379 (429)
Q Consensus 304 ~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~-~-~~--~~~~~~~~~~~~~~~~~~~~~~ 379 (429)
+|.+++.+++...+.+++.|+++.|+.++.++++.+++.|+|+|.++.... . .. ......|.+ +.....++.+.
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L--~~~l~~~~~~v 334 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL--ISILQTAEFRT 334 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH--HHHHHHSCHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH--HHHHhcCCHHH
Confidence 999999988888888999999999999999999999999999999998521 1 10 000000000 01112235677
Q ss_pred hHHHHHHHHHHHHH
Q 014196 380 AQEGKKMMKNLVQQ 393 (429)
Q Consensus 380 ~~~~k~~l~~~~~~ 393 (429)
+..+-.+|.++...
T Consensus 335 ~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 335 RKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC
Confidence 78888888888754
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=230.04 Aligned_cols=279 Identities=16% Similarity=0.079 Sum_probs=243.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+.++.+++.|.++++..+..|+..|.+++.+++.++..+++.|++|.|+.+|.+++..++..++.+|.+++.++++++.
T Consensus 100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~ 179 (529)
T 1jdh_A 100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 46799999999999999999999999999998778899999999999999999999999999999999999998767899
Q ss_pred HHHhcCccchhhhhccCCCHH-HHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 151 IMVEAGILTKLPKNVDAVDES-TRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~-~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
.+++.|+++.|+.+++..+.+ .+..++.+|++|+..++++..+.+.|+++.|+.++.+++. .+++.++++|.||+...
T Consensus 180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCCh-HHHHHHHHHHHHHhcCC
Confidence 999999999999999876644 4555677999999888888888899999999999999876 78999999999999875
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccC-CChhHHHHHHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWE-EKPKCQELSAYILM 306 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~-~s~~~~e~A~~~L~ 306 (429)
.... ...|++|.|+.+|.+.+ ++++.++.+|.+|+.. ++.+..+.+.|+++ .|+++|... .++..++.|+.+|.
T Consensus 259 ~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~-~L~~ll~~~~~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 259 TKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE-ALVRTVLRAGDREDITEPAICALR 335 (529)
T ss_dssp TTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH-HHHHHHHccCCHHHHHHHHHHHHH
Confidence 4432 23589999999998765 8999999999999984 67999999988775 899999732 33789999999999
Q ss_pred HHhhCC---HHHHHHHHhCCchHHHHHHhhcCC-HHHHHHHHHHHHHHHhc
Q 014196 307 ILAHQS---SEQRDKMAKSGIVHVSLQLALLGS-PLAQRRASKLLQWFKDE 353 (429)
Q Consensus 307 ~L~~~~---~~~~~~i~~~G~v~~L~~ll~~~~-~~~k~~A~~lL~~l~~~ 353 (429)
+|+..+ +..+..+.+.|++|.|+.++.++. +.+++.|+|+|.++...
T Consensus 336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~ 386 (529)
T 1jdh_A 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386 (529)
T ss_dssp HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred HHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence 998754 336788999999999999999875 68999999999998854
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=211.07 Aligned_cols=195 Identities=20% Similarity=0.191 Sum_probs=173.0
Q ss_pred cHHHHHHhhcCCCH--HHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc-CCCcc
Q 014196 115 VIQMLVSMVSTEVI--GRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHI 191 (429)
Q Consensus 115 ~i~~Lv~lL~s~~~--~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~ 191 (429)
.+|.||.+|.++|+ ++|..|+++|.+|+.+++++|..|++.|+||+|+.+|.+++.+.++.|+++|.+|+.. ++++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 48999999999988 8999999999999988767999999999999999999999999999999999999974 57899
Q ss_pred ccccCCcHHHHHHhhhc-CCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccC----------------Cc-c
Q 014196 192 PLSSSEILPFLVGILES-GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSM----------------KE-R 253 (429)
Q Consensus 192 ~i~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~----------------~~-~ 253 (429)
.|.+.|+||+|+++|.+ ++. +++++|+.+|+||+.+++++..+++ +++|+|+.++.. .+ .
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~-~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDL-ETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCH-HHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999985 565 7999999999999999999998887 579999987630 12 7
Q ss_pred hHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccC-----CChhHHHHHHHHHHHHhhC
Q 014196 254 LSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWE-----EKPKCQELSAYILMILAHQ 311 (429)
Q Consensus 254 ~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~-----~s~~~~e~A~~~L~~L~~~ 311 (429)
+.++|..+|.||+. ++++|+.|.+++|+++.||.+++.. .+...+|+|+.+|.+||.+
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 88999999999998 6799999999988878999999721 2567899999999999864
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=230.86 Aligned_cols=280 Identities=16% Similarity=0.076 Sum_probs=243.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+.++.|++.|.++++..+..|+..|.+++..++..+..+++.|++|.|+.+|.++++.++..++.+|.+|+..+++++.
T Consensus 97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 176 (644)
T 2z6h_A 97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176 (644)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence 45789999999999999999999999999998778899999999999999999999999999999999999987667899
Q ss_pred HHHhcCccchhhhhccCCC-HHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 151 IMVEAGILTKLPKNVDAVD-ESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~-~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
.+++.|+++.|+.+++..+ ...+..++.+|++|+..+.++..+.+.|+++.|+.++.+++. .+++.++++|.||+...
T Consensus 177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~-~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCH-HHHHHHHHHHHHHGGGC
T ss_pred HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcc
Confidence 9999999999999998765 456677888999999888888889999999999999999876 79999999999999865
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCC-hhHHHHHHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEK-PKCQELSAYILM 306 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s-~~~~e~A~~~L~ 306 (429)
... ....|+++.|+.+|.+.+ .+++.++.+|.+|+.. ++.++.+.+.|+++ .|+++|...++ +..++.|+.+|.
T Consensus 256 ~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~-~Lv~lL~~~~~~~~v~~~a~~aL~ 332 (644)
T 2z6h_A 256 TKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE-ALVRTVLRAGDREDITEPAICALR 332 (644)
T ss_dssp TTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHH-HHHHHHHccCCcHHHHHHHHHHHH
Confidence 433 223489999999998766 8999999999999984 68899999988775 89999973233 789999999999
Q ss_pred HHhhCCH---HHHHHHHhCCchHHHHHHhhcCC-HHHHHHHHHHHHHHHhcc
Q 014196 307 ILAHQSS---EQRDKMAKSGIVHVSLQLALLGS-PLAQRRASKLLQWFKDER 354 (429)
Q Consensus 307 ~L~~~~~---~~~~~i~~~G~v~~L~~ll~~~~-~~~k~~A~~lL~~l~~~~ 354 (429)
+|+..++ ..+..+++.|+++.|+.++.+.+ +.+++.|+|+|.++...+
T Consensus 333 nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~ 384 (644)
T 2z6h_A 333 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384 (644)
T ss_dssp HHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSG
T ss_pred HHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCH
Confidence 9997532 35666888999999999999874 689999999999987543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=233.67 Aligned_cols=277 Identities=18% Similarity=0.098 Sum_probs=242.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.++.|++.|.++ +++.+..|+..|++++.. +.++..+.+.|+|+.|+.+|+++++.++..|+++|.||+.+.+.++
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 36789999999865 899999999999999875 5779999999999999999999999999999999999999876678
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc-CCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
..+++.|+++.|+.+|.+.+...+..++.+|.+|+.. ++++..+.+.|+++.|+++|++++....+..++.+|.+|+.+
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 8888999999999999988888888888899999864 467777888899999999999887756677899999999999
Q ss_pred CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHH
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMI 307 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~ 307 (429)
+.++..+++.|+++.|+.++.+.+ .+++.++.+|.+|+...... ... .++++.|+++|. +.++..++.|+++|.+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~-~~~i~~Lv~lL~-~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLG-SDDINVVTCAAGILSN 425 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCC-HHHHHHHHHHTT-CSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhh-hhHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 999999999999999999998775 89999999999999753221 111 234468999998 7889999999999999
Q ss_pred HhhCCHHHHHHHHhCCchHHHHHHhhc-CC-HHHHHHHHHHHHHHHh
Q 014196 308 LAHQSSEQRDKMAKSGIVHVSLQLALL-GS-PLAQRRASKLLQWFKD 352 (429)
Q Consensus 308 L~~~~~~~~~~i~~~G~v~~L~~ll~~-~~-~~~k~~A~~lL~~l~~ 352 (429)
|+..+++.++.+++.|+++.|+.++.. ++ +.++..|+++|+++..
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 999888899999999999999999987 43 4899999999999974
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=227.99 Aligned_cols=279 Identities=15% Similarity=0.065 Sum_probs=241.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.+.++.|+..|.++++..+..|+..|.+++..++..+..+++.|+++.|+.+|.+++..+++.++.+|.+|+..+++++.
T Consensus 233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~ 312 (780)
T 2z6g_A 233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312 (780)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 35789999999999999999999999999998888899999999999999999999999999999999999987767899
Q ss_pred HHHhcCccchhhhhccCCCHH-HHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 151 IMVEAGILTKLPKNVDAVDES-TRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~-~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
.+++.|+++.|+.+++..+.+ .++.++.+|++|+....++..+.+.|+++.|+.++.+++. ..++.|+++|.+|+...
T Consensus 313 ~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~-~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ-RLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp HHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCch-HHHHHHHHHHHHHhccc
Confidence 999999999999999877644 4456778999999888888888899999999999998876 78999999999999765
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCC-hhHHHHHHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEK-PKCQELSAYILM 306 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s-~~~~e~A~~~L~ 306 (429)
... ....++++.|+.+|.+.+ .+++.|+.+|.+|+.. ++.+..+.+.|+++ .|+++|...++ +..++.|+.+|.
T Consensus 392 ~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~-~Lv~lL~~~~~~~~v~~~Al~aL~ 468 (780)
T 2z6g_A 392 TKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE-ALVRTVLRAGDREDITEPAICALR 468 (780)
T ss_dssp TTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHH-HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHH-HHHHHHHccCCHHHHHHHHHHHHH
Confidence 432 223589999999998776 8999999999999985 67888899888775 89999973233 389999999999
Q ss_pred HHhhCCH---HHHHHHHhCCchHHHHHHhhcCC-HHHHHHHHHHHHHHHhc
Q 014196 307 ILAHQSS---EQRDKMAKSGIVHVSLQLALLGS-PLAQRRASKLLQWFKDE 353 (429)
Q Consensus 307 ~L~~~~~---~~~~~i~~~G~v~~L~~ll~~~~-~~~k~~A~~lL~~l~~~ 353 (429)
+|+..++ ..+..+...|+++.|+.++..++ +.+++.|+|+|.++...
T Consensus 469 nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~ 519 (780)
T 2z6g_A 469 HLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 519 (780)
T ss_dssp HTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS
T ss_pred HHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC
Confidence 9987543 24668888999999999999876 49999999999999853
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.7e-24 Score=191.96 Aligned_cols=195 Identities=19% Similarity=0.229 Sum_probs=178.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
+..+.++..|.+++++.+..|+..|.+++..+++++..+.+.|++|.|+.+|.++++.+++.|+++|.||+.+++.++..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34788999999999999999999999999888899999999999999999999999999999999999999877678999
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-C
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV-L 229 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~ 229 (429)
+++.|+++.|+.+|++.+...+..++.+|.+|+... +....+.+.|++|.|+++|.+++. .++..|+++|.||+.. +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTSCH
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999999999999999654 344566789999999999999887 7999999999999987 6
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
+++..+++.|+++.|+.++.+.+ .+++.|+.+|.+|+.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 67788999999999999999776 899999999999975
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-23 Score=216.75 Aligned_cols=280 Identities=11% Similarity=0.076 Sum_probs=230.9
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhch-------------------------------------H-HHHHH
Q 014196 70 DCVLLQKSVKRLHF-GSWEEKEMAAKEIEKLAKEDV-------------------------------------K-IKKLM 110 (429)
Q Consensus 70 ~~~~l~~lv~~L~~-~~~~~~~~Aa~~L~~La~~~~-------------------------------------~-~r~~i 110 (429)
+.+.++.|+..++. ++......++..|.+++...+ + ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 45568889999984 556677778888888875221 1 67788
Q ss_pred HhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHH---HHHHHHHHHHHhhccC
Q 014196 111 AELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDES---TRHEFGELLLSLSSLA 187 (429)
Q Consensus 111 ~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~---~~~~aa~~L~~Ls~~~ 187 (429)
.++|+||+|+.++.++++.+++.|+++|.||+.+. ++|..+++.|++++|+.++.+.... .++.|+.+|.+|....
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999999999886 7999999999999999999877543 7889999999998766
Q ss_pred CCccccc---cCCcHHHHHHhhhcC-Cc-----------H-HHHHHHHHHHHHhccCCCC-----hhHHHhc-CcHHHHH
Q 014196 188 NTHIPLS---SSEILPFLVGILESG-SS-----------V-ETKELCIGALYNLSAVLDN-----ARPMVSN-GVVHTLL 245 (429)
Q Consensus 188 ~~~~~i~---~~g~i~~Lv~lL~~~-~~-----------~-~~~~~A~~aL~nLs~~~~n-----~~~iv~~-G~v~~Lv 245 (429)
+....+. ..|+||+|+.+|..+ .. . -.+..|+.||.||+..++| +..++.. |++|.|.
T Consensus 533 np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 533 NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 5444443 149999999999832 11 0 1266899999999998744 6778885 9999999
Q ss_pred HhccCCc-chHHHHHHHHHHhhCChhcH-HHHhcCC------CChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHH
Q 014196 246 KLCSMKE-RLSEKSLATLGNLVVTSTGK-KAMEDSP------LVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRD 317 (429)
Q Consensus 246 ~lL~~~~-~~~~~a~~~L~~La~~~e~~-~~i~~~~------~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~ 317 (429)
.+|.+.. .+++.|+.++.||+.+++++ +.+.+.+ ++ +.||.++. .++...|+.|.++|.+++..++..++
T Consensus 613 ~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL-~lLV~Ll~-s~D~~~r~AAagALAnLts~~~~ia~ 690 (778)
T 3opb_A 613 NLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNF-NILVKLLQ-LSDVESQRAVAAIFANIATTIPLIAK 690 (778)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHH-HHHHHGGG-CSCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccH-HHHHHHHc-CCCHHHHHHHHHHHHHhcCCChHHHH
Confidence 9998654 88999999999999999886 4665433 13 37999998 79999999999999999877788888
Q ss_pred HHHhC-CchHHHHHHhhc--CCHHHHHHHHHHHHHHHh
Q 014196 318 KMAKS-GIVHVSLQLALL--GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 318 ~i~~~-G~v~~L~~ll~~--~~~~~k~~A~~lL~~l~~ 352 (429)
.+++. |+++.|+.+++. +++..+.+++.++.+|..
T Consensus 691 ~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 691 ELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 89997 799999999999 799999999999999996
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-23 Score=185.70 Aligned_cols=196 Identities=19% Similarity=0.234 Sum_probs=175.2
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc-CCCc
Q 014196 112 ELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTH 190 (429)
Q Consensus 112 ~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~ 190 (429)
..|+.+.|+.+|.++|++++..|+++|.+++.+++.++..+++.|+++.|+.+|.+.+.+.++.++.+|.+|+.. ++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 468899999999999999999999999999987767899999999999999999999999999999999999954 4667
Q ss_pred cccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC-ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC
Q 014196 191 IPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD-NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 191 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~ 268 (429)
..+.+.|++|.|+.+|.+++. .++..|+++|.||+.+.. ++..+++.|+++.|+.+|.+.+ .+++.|+.+|.+|+..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCH-HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHHcCCcH-HHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 778899999999999999987 799999999999997544 4578899999999999999776 8999999999999986
Q ss_pred -hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 269 -STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 269 -~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
++.+..+.+.|+++ .|++++. ++++..++.|+.+|.+++.
T Consensus 169 ~~~~~~~~~~~g~i~-~L~~ll~-~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALE-KLEQLQS-HENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHH-HHHHGGG-CSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHH-HHHHHHh-CCCHHHHHHHHHHHHHHhc
Confidence 88888898987765 8999998 7899999999999999875
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=187.40 Aligned_cols=199 Identities=17% Similarity=0.174 Sum_probs=173.6
Q ss_pred hhhHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHH-hhcCCCHHHHHHH
Q 014196 68 EDDCVLLQKSVKRLHFG------------SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVS-MVSTEVIGRRRAA 134 (429)
Q Consensus 68 ~~~~~~l~~lv~~L~~~------------~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~~~~~~A 134 (429)
+.+...++..+.-|.++ +.+.+..|+..|..++. +.+++..+++.|++|+||. +|.++++.+++.|
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHH
Confidence 34566678888888764 23678889999999997 5578999999999999999 9999999999999
Q ss_pred HHHHHHhccCCCchHHHHHhcCccchhhhhccC-CCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcH
Q 014196 135 IKALIQLANGTYTNKAIMVEAGILTKLPKNVDA-VDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSV 212 (429)
Q Consensus 135 ~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~ 212 (429)
+|+|.|++.+++.++..+++.|++|+|+.+|.+ .+...++.|+++|.+|+... .....+.+.|++|.|+.+|.+++.
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~- 181 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ- 181 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH-
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCH-
Confidence 999999999987789999999999999999985 47889999999999998654 334567788999999999999887
Q ss_pred HHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC
Q 014196 213 ETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 213 ~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~ 268 (429)
.++..|+++|.||+.. ++.+..+++.|++++|+.+|..++ .+++.++.+|.+|+..
T Consensus 182 ~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 182 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 8999999999999975 557789999999999999999776 9999999999999985
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=8e-20 Score=192.77 Aligned_cols=314 Identities=11% Similarity=0.111 Sum_probs=241.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCc-
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYT- 147 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~- 147 (429)
....+.+++.|..++.+.+..|+..|.-++. +++.|..+++ .|+++.|+.+++. ++..+.-.++.+|.||+...+.
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSL-KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT-SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhC-CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 3467788888888777778899999999987 5678988887 5779999999995 7788999999999999763321
Q ss_pred -------------------------------------hHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCc
Q 014196 148 -------------------------------------NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH 190 (429)
Q Consensus 148 -------------------------------------nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~ 190 (429)
++..+.++|+||+|+.++.+.+...++.++++|.+||.+.+++
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 4567778999999999999999999999999999999998999
Q ss_pred cccccCCcHHHHHHhhhcCCcH--HHHHHHHHHHHHhccCCCChhHHH--h-cCcHHHHHHhccC-Cc-c----------
Q 014196 191 IPLSSSEILPFLVGILESGSSV--ETKELCIGALYNLSAVLDNARPMV--S-NGVVHTLLKLCSM-KE-R---------- 253 (429)
Q Consensus 191 ~~i~~~g~i~~Lv~lL~~~~~~--~~~~~A~~aL~nLs~~~~n~~~iv--~-~G~v~~Lv~lL~~-~~-~---------- 253 (429)
..+...|++++|+++|.+++.. .++..|+.||.+|....+....+- + .|+||+|+.+|.. ++ .
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 9999999999999999988642 279999999999986554333221 1 3999999999983 22 1
Q ss_pred --h-HHHHHHHHHHhhCCh-----hcHHHHhcC-CCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHH-HHHHhCC
Q 014196 254 --L-SEKSLATLGNLVVTS-----TGKKAMEDS-PLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQR-DKMAKSG 323 (429)
Q Consensus 254 --~-~~~a~~~L~~La~~~-----e~~~~i~~~-~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~-~~i~~~G 323 (429)
. +..|+.+|.||+..+ +.|+.|+++ |++ +.|+++|. +++...|+.|+.++.+|+.. ++.+ +.+...+
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~-~~L~~LL~-s~n~~VrrAA~elI~NL~~~-~e~i~~k~~~~~ 648 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW-STIENLML-DENVPLQRSTLELISNMMSH-PLTIAAKFFNLE 648 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH-HHHHHGGG-CSSHHHHHHHHHHHHHHHTS-GGGTGGGTSCCS
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH-HHHHHHHh-CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHhhc
Confidence 1 668999999999975 458888886 665 59999998 78899999999999999974 4433 3443322
Q ss_pred ------chHHHHHHhhcCCHHHHHHHHHHHHHHH-hcccc-C-CCCCCCCCcccc----ccCC--CCChhhhHHHHHHHH
Q 014196 324 ------IVHVSLQLALLGSPLAQRRASKLLQWFK-DERQA-K-MGPHSGPQTRRV----SIGS--PVSPREAQEGKKMMK 388 (429)
Q Consensus 324 ------~v~~L~~ll~~~~~~~k~~A~~lL~~l~-~~~~~-~-~~~~~~~~~~~~----~~~~--~~~~~~~~~~k~~l~ 388 (429)
.++.|+.++..++..+|+.|+|+|.++. ..+.. + ... ..+.+ .+.. .++++++.++-..+.
T Consensus 649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~----~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT----KKELIENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT----CHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH----ccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 3789999999999999999999999995 43331 1 110 00111 1111 246677777777777
Q ss_pred HHHH
Q 014196 389 NLVQ 392 (429)
Q Consensus 389 ~~~~ 392 (429)
+|+.
T Consensus 725 NL~~ 728 (778)
T 3opb_A 725 GLFE 728 (778)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7764
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=170.24 Aligned_cols=222 Identities=17% Similarity=0.096 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhh-hccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHh
Q 014196 128 IGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPK-NVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGI 205 (429)
Q Consensus 128 ~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~-lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~l 205 (429)
.+.+..|+..|.+++.+. +|...+++.|++|+|+. +|.+++.++++.|+++|.+++.++ ..+..+.+.|++|+|+++
T Consensus 54 ~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 457888999999999886 58889999999999999 999999999999999999999765 466778899999999999
Q ss_pred hhcCCcHHHHHHHHHHHHHhccCCC-ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCCh
Q 014196 206 LESGSSVETKELCIGALYNLSAVLD-NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVP 282 (429)
Q Consensus 206 L~~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~ 282 (429)
|.++....+++.|+++|.||+.+.. ....++++|++|.|+.+|.+++ .++.+|+.+|.+|+. +++.+..+++.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 9975334799999999999998654 4568889999999999999876 899999999999987 688899999987775
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCC-chHHH----HHHhhcC--CHHHHHHHHHHHHHHHh
Q 014196 283 ESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSG-IVHVS----LQLALLG--SPLAQRRASKLLQWFKD 352 (429)
Q Consensus 283 ~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G-~v~~L----~~ll~~~--~~~~k~~A~~lL~~l~~ 352 (429)
.|+++|. +.++..+++|+.+|.+|+...+.........+ .+..+ .+-++.. .....++|..++..+-.
T Consensus 213 -~Lv~LL~-~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 213 -QLVALVR-TEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp -HHHHHHT-SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred -HHHHHHc-CCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 8999998 78899999999999999987655444333211 12222 2223322 35677788888876664
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-13 Score=141.36 Aligned_cols=276 Identities=13% Similarity=0.122 Sum_probs=213.5
Q ss_pred hhHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCC
Q 014196 69 DDCVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVST--EVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 69 ~~~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s--~~~~~~~~A~~aL~nLa~~~ 145 (429)
...+.|+.|+.+|.+. -.+.|+.|+..|+.++++- |..+ ..++++.|+..|+. .|.++...++.+|.++-..+
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y---~~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY---RLEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT---TTHH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh---HHHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence 4567899999999976 5799999999999999743 4444 45679999999987 47889999999999876544
Q ss_pred Cc-----------------hHHH-HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC--Cccccc-cCCcHHHHHH
Q 014196 146 YT-----------------NKAI-MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN--THIPLS-SSEILPFLVG 204 (429)
Q Consensus 146 ~~-----------------nk~~-iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~-~~g~i~~Lv~ 204 (429)
+. +... +.+.+.|+.|+.+|++.+...|.++..+|..|+.... ++..|. ..++|+.|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 22 1112 2356889999999999999999999999999986652 455566 5699999999
Q ss_pred hhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhc-CcHHHHHHhccCC-----cchHHHHHHHHHHhhC-ChhcHHHHhc
Q 014196 205 ILESGSSVETKELCIGALYNLSAVLDNARPMVSN-GVVHTLLKLCSMK-----ERLSEKSLATLGNLVV-TSTGKKAMED 277 (429)
Q Consensus 205 lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~-G~v~~Lv~lL~~~-----~~~~~~a~~~L~~La~-~~e~~~~i~~ 277 (429)
+|.+... .+|..++..|.+|+.+..+.++++.. |+|+.|+.++... +.+++.|+.+|.+|.. ++.++..+.+
T Consensus 174 lL~d~rE-~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE 252 (651)
T 3grl_A 174 LLADSRE-VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE 252 (651)
T ss_dssp GGGCSSH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCchH-HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9998775 78999999999999998888877776 9999999999742 2689999999999998 6778899999
Q ss_pred CCCChHHHHHhcccCCChh------HHHH---HHHHHHHHhhC------CHHHHHHHHhCCchHHHHHHhhcC--CHHHH
Q 014196 278 SPLVPESLIEILTWEEKPK------CQEL---SAYILMILAHQ------SSEQRDKMAKSGIVHVSLQLALLG--SPLAQ 340 (429)
Q Consensus 278 ~~~i~~~Lv~~L~~~~s~~------~~e~---A~~~L~~L~~~------~~~~~~~i~~~G~v~~L~~ll~~~--~~~~k 340 (429)
.++++ .|..++. .+.+. ...+ +..++.-++.. +..++..+.+.|+++.|++++... ...++
T Consensus 253 t~~i~-~L~~LL~-~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~ 330 (651)
T 3grl_A 253 GSYIQ-RMKPWFE-VGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330 (651)
T ss_dssp TTCGG-GGGGGGC-CCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred cCCHH-HHHHHhC-CCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence 88776 8999886 22211 1222 33444444443 246788999999999999998864 56777
Q ss_pred HHHHHHHHHHH
Q 014196 341 RRASKLLQWFK 351 (429)
Q Consensus 341 ~~A~~lL~~l~ 351 (429)
..|...+..+-
T Consensus 331 ~~Al~tla~~i 341 (651)
T 3grl_A 331 TETINTVSEVI 341 (651)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776655444
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-12 Score=128.40 Aligned_cols=286 Identities=15% Similarity=0.080 Sum_probs=211.7
Q ss_pred CCChhhHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhchH-----------------HHHHH-HhcCcHHHHHHhhc
Q 014196 65 DIEEDDCVLLQKSVKRLHFG--SWEEKEMAAKEIEKLAKEDVK-----------------IKKLM-AELGVIQMLVSMVS 124 (429)
Q Consensus 65 ~~~~~~~~~l~~lv~~L~~~--~~~~~~~Aa~~L~~La~~~~~-----------------~r~~i-~~~G~i~~Lv~lL~ 124 (429)
+.......+++.++..|+.. |.+.-+.++..|.++...++. +...+ .+.+.|+.|+.+|+
T Consensus 53 y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~ 132 (651)
T 3grl_A 53 YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE 132 (651)
T ss_dssp TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT
T ss_pred hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc
Confidence 33344456788999999865 666677788888765533221 22333 45788999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCCc-hHHHHHhc-CccchhhhhccCCCHHHHHHHHHHHHHhhccCC-CccccccCCcHHH
Q 014196 125 TEVIGRRRAAIKALIQLANGTYT-NKAIMVEA-GILTKLPKNVDAVDESTRHEFGELLLSLSSLAN-THIPLSSSEILPF 201 (429)
Q Consensus 125 s~~~~~~~~A~~aL~nLa~~~~~-nk~~iv~~-G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~ 201 (429)
++|..++.+++..|..|+.+... ++..|..+ ++|+.|+.+|.......|-++..+|.+|+.... .+..++-.|+++.
T Consensus 133 ~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~ 212 (651)
T 3grl_A 133 EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFER 212 (651)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHH
Confidence 99999999999999999877644 67888855 999999999998888888889999999997764 4555667899999
Q ss_pred HHHhhhcCCc---HHHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCCcc-------hHHH---HHHHHHHhhC
Q 014196 202 LVGILESGSS---VETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMKER-------LSEK---SLATLGNLVV 267 (429)
Q Consensus 202 Lv~lL~~~~~---~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~~~-------~~~~---a~~~L~~La~ 267 (429)
|+.++..... ..+..+|+..|.||..+ +.|+..+.|.|++|.|..+|...++ ...+ ++.++.-|+.
T Consensus 213 Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~ 292 (651)
T 3grl_A 213 LLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVS 292 (651)
T ss_dssp HHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhC
Confidence 9999986321 14778999999999985 4588999999999999999874321 2233 4555555554
Q ss_pred C-------hhcHHHHhcCCCChHHHHHhcccCC-ChhHHHHHHHHHHHHhhCCHHHHHHHHhCC-----chHHHHHH---
Q 014196 268 T-------STGKKAMEDSPLVPESLIEILTWEE-KPKCQELSAYILMILAHQSSEQRDKMAKSG-----IVHVSLQL--- 331 (429)
Q Consensus 268 ~-------~e~~~~i~~~~~i~~~Lv~~L~~~~-s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G-----~v~~L~~l--- 331 (429)
. +.++.++.+.|++. .|++++...+ ....+..|+.++..+.++++..++.+.+.. ..|.++.+
T Consensus 293 ~~~~~~~t~~nQ~~~~~~g~l~-~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~ 371 (651)
T 3grl_A 293 PNNPPGATSSCQKAMFQCGLLQ-QLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMS 371 (651)
T ss_dssp TTSCHHHHHHHHHHHHHTTHHH-HHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCHH-HHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHH
Confidence 2 24577888877765 8999887222 456788899999999998898888887753 23445544
Q ss_pred -hhc-CCHHHHHHHHHHHHHHH
Q 014196 332 -ALL-GSPLAQRRASKLLQWFK 351 (429)
Q Consensus 332 -l~~-~~~~~k~~A~~lL~~l~ 351 (429)
+.+ .....|-.|+..++++-
T Consensus 372 ~~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 372 MVNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp HTCTTSCHHHHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHHH
Confidence 433 35677777777877765
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-11 Score=114.91 Aligned_cols=225 Identities=9% Similarity=-0.001 Sum_probs=172.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
.++.++..|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+++|..+....+ ....
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~-~~~~- 90 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-CEDN- 90 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-THHH-
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-cchH-
Confidence 47899999999999999999999998762 2358999999999999999999999999875532 2111
Q ss_pred HhcCccchhh-hhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCC
Q 014196 153 VEAGILTKLP-KNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDN 231 (429)
Q Consensus 153 v~~G~i~~Lv-~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n 231 (429)
.++.|. .+++..+..++..++.+|..+..... .....+++.|+.++.+++. .++..|+.+|.++..
T Consensus 91 ----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~-~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKST-NVRRATAFAISVIND---- 157 (280)
T ss_dssp ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCH-HHHHHHHHHHHTC------
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCH-HHHHHHHHHHHhcCC----
Confidence 233333 24567778899999999999874321 1123468999999998887 799999999988753
Q ss_pred hhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 232 ARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 232 ~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
.++++.|+.++.+++ .++..++.+|..+.... ..+.+.|++++. +.++.++..|+.+|..+.
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~-d~~~~vR~~A~~aL~~~~- 220 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ-DKNEEVRIEAIIGLSYRK- 220 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTT-CSCHHHHHHHHHHHHHTT-
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhC-
Confidence 358999999999876 78889999998874321 112347899998 788999999999998875
Q ss_pred CCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 311 QSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 311 ~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
...+++.|+.++.+.+ ++..|.+.|..+++
T Consensus 221 ----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 221 ----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp ----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred ----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 2357899999998754 78888888888765
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=105.21 Aligned_cols=186 Identities=17% Similarity=0.129 Sum_probs=151.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
...++.++..|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4558999999999999999999999987653 3579999999999999999999999988752
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD 230 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 230 (429)
.++++.|+.++.+.+..+|..++.+|..+. ..++++.|+++|.+++. .++..|+.+|.++..
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~--- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDW-FVRIAAAFALGEIGD--- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCC---
Confidence 246677888899888999999999988875 23578999999988887 799999999998853
Q ss_pred ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 231 NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 231 n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
..+++.|+.++.+++ .++..++.+|..+.. ..+.+.|.+++. ++++.++..|..+|..+.
T Consensus 142 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 142 -------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAE-TGTGFARKVAVNYLETHK 202 (211)
T ss_dssp -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHH-HCCHHHHHHHHHHHHC--
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHh-CCCHHHHHHHHHHHHhcC
Confidence 357899999998876 888899999988743 112347888887 788999999999999876
Q ss_pred hC
Q 014196 310 HQ 311 (429)
Q Consensus 310 ~~ 311 (429)
..
T Consensus 203 ~~ 204 (211)
T 3ltm_A 203 SF 204 (211)
T ss_dssp --
T ss_pred CC
Confidence 54
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-10 Score=103.74 Aligned_cols=187 Identities=19% Similarity=0.166 Sum_probs=152.1
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP 192 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 192 (429)
.+.++.|+.+|.++++.++..|+.+|..+.. .++++.|+.++.+.+...+..++.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 5679999999999999999999999987643 356788889999888999999988888775
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhc
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~ 271 (429)
..++++.|+++|.+.+. .++..|+.+|.++.. .++++.|+.+|.+++ .++..++.+|..+.. +
T Consensus 79 --~~~~~~~L~~~l~~~~~-~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~-- 142 (211)
T 3ltm_A 79 --DERAVEPLIKALKDEDG-WVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-E-- 142 (211)
T ss_dssp --CGGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-G--
T ss_pred --CHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-H--
Confidence 24578999999998887 799999999998753 357899999998876 888999999988743 1
Q ss_pred HHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 272 KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 272 ~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
. ..+.|++++. +.++.++..|+.+|..+.. ..+++.|..++.++++.++..|.+.|..+.
T Consensus 143 -------~-~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 143 -------R-AVEPLIKALK-DEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp -------G-GHHHHHHHTT-CSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred -------H-HHHHHHHHHc-CCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 2 3358999997 7889999999999998742 235788999999999999999999999888
Q ss_pred hcc
Q 014196 352 DER 354 (429)
Q Consensus 352 ~~~ 354 (429)
...
T Consensus 203 ~~~ 205 (211)
T 3ltm_A 203 SFN 205 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 643
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-10 Score=101.78 Aligned_cols=185 Identities=17% Similarity=0.144 Sum_probs=152.2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.....+.+++.|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 46778999999999999999999999987653 2568999999999999999999999988742
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
.++++.|+.++.+.+..+|..++.+|..+. ...+++.|+.+|.+.+. .++..|+.+|.++..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDW-FVRIAAAFALGEIGD-- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSH-HHHHHHHHHHHHHTC--
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCC--
Confidence 245777888898888999999999988875 23578999999988886 799999999998853
Q ss_pred CChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMIL 308 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L 308 (429)
.+.++.|+.++.+.+ .++..|+.+|..+.. + ...+.|.+++. +.++.++..|..+|..+
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~----------~~~~~L~~~l~-d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-E----------RVRAAMEKLAE-TGTGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-H----------HHHHHHHHHHH-HCCHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-h----------hHHHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 468899999999876 788999999988732 1 12347888887 68899999999988775
Q ss_pred h
Q 014196 309 A 309 (429)
Q Consensus 309 ~ 309 (429)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-10 Score=101.24 Aligned_cols=185 Identities=19% Similarity=0.174 Sum_probs=151.1
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP 192 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 192 (429)
.+..+.++.+|.++|+.++..|+.+|..+.. .++++.|+.++.+.+...+..++.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence 3567899999999999999999999987653 246778888898888889999888888764
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhc
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~ 271 (429)
..++++.|+.+|.+.++ .++..|+.+|.++.. .++++.|+.+|.+++ .++..++.+|..+..
T Consensus 74 --~~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 74 --DERAVEPLIKALKDEDG-WVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp --CGGGHHHHHHHTTCSSH-HHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred --CHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 23578999999998887 799999999998753 357899999998876 788899999988743
Q ss_pred HHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 272 KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 272 ~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
....+.|++++. +.++.++..|+.+|..+. ++ .+++.|..++.++++.++..|.+.|..+.
T Consensus 137 -------~~~~~~L~~~l~-d~~~~vr~~A~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 -------ERAVEPLIKALK-DEDGWVRQSAADALGEIG--GE---------RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHC--SH---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC--ch---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 123358999998 788899999999999873 22 26788899999999999999999988765
Q ss_pred h
Q 014196 352 D 352 (429)
Q Consensus 352 ~ 352 (429)
.
T Consensus 198 ~ 198 (201)
T 3ltj_A 198 S 198 (201)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-10 Score=123.38 Aligned_cols=310 Identities=12% Similarity=0.055 Sum_probs=211.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHH--HH--hcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKL--MA--ELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~--i~--~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
..++.++..+.++++..+..|+..|..++++.+..-.. +. -.+.+|.|+.++.++++.+|..|+++|.++.....
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~- 206 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT- 206 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc-
Confidence 45888999999989999999999999998755432111 00 13468889999999999999999999998876542
Q ss_pred hHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCC--ccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHh
Q 014196 148 NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANT--HIPLSSSEILPFLVGILESGSSVETKELCIGALYNL 225 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 225 (429)
....-.-.+.++.+..++...+.++|..++.+|..++..... ...+ .+.++.+..++.+.+. .++..|+..+.++
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~-~vr~~a~e~l~~l 283 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDE-NVALEACEFWLTL 283 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcH-HHHHHHHHHHHHH
Confidence 211111124677788888888889999999999998854311 1111 2467888888887765 7899999999999
Q ss_pred ccCCCChhHHH--hcCcHHHHHHhc-----------cC-----------Cc-chHHHHHHHHHHhhCChhcHHHHhcCCC
Q 014196 226 SAVLDNARPMV--SNGVVHTLLKLC-----------SM-----------KE-RLSEKSLATLGNLVVTSTGKKAMEDSPL 280 (429)
Q Consensus 226 s~~~~n~~~iv--~~G~v~~Lv~lL-----------~~-----------~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~ 280 (429)
+.....+..+. -...+|.++..+ .| .+ .+++.+..+|..++.... ..+.. .
T Consensus 284 ~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~--~ 359 (852)
T 4fdd_A 284 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELLP--H 359 (852)
T ss_dssp TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGHH--H
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHHH--H
Confidence 87643222111 125677777777 23 11 357778888888876321 11222 2
Q ss_pred ChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCC
Q 014196 281 VPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGP 360 (429)
Q Consensus 281 i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~ 360 (429)
+.+.+.+.+. +.+...++.|+.+|..++.+..+.... .-.+++|.|+.++.+.++.++..|+|.|..+.+.-.. ..
T Consensus 360 l~~~l~~~l~-~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~ 435 (852)
T 4fdd_A 360 ILPLLKELLF-HHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS--QP 435 (852)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH--SC
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc--ch
Confidence 3346777777 678999999999999999876543222 2246789999999999999999999999988863210 01
Q ss_pred CCCCCcccc-----ccCCCCChhhhHHHHHHHHHHHHHH
Q 014196 361 HSGPQTRRV-----SIGSPVSPREAQEGKKMMKNLVQQS 394 (429)
Q Consensus 361 ~~~~~~~~~-----~~~~~~~~~~~~~~k~~l~~~~~~~ 394 (429)
+ .+....+ ....+.+.+.+..+-.++.++++.+
T Consensus 436 ~-~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 436 P-DTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA 473 (852)
T ss_dssp T-TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 1 1122221 1122346778888888998888765
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.17 E-value=8.8e-10 Score=104.07 Aligned_cols=201 Identities=11% Similarity=0.010 Sum_probs=150.4
Q ss_pred HHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCC
Q 014196 110 MAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANT 189 (429)
Q Consensus 110 i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~ 189 (429)
....+.++.|+..|.++++.++..|+++|.++.. .++++.|+.++.+.+...|..++.+|..+......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 3446789999999999999999999999998861 23567788999988888999999998887632211
Q ss_pred ccccccCCcHHHHHH-hhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 190 HIPLSSSEILPFLVG-ILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 190 ~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
.. ..++.|.. ++.+.+. .++..++.+|.++...... ....+++.|+.++.+++ .++..++.+|.++..
T Consensus 88 ~~-----~l~~~L~~~~~~d~~~-~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 ED-----NVFNILNNMALNDKSA-CVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred ch-----HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 00 12333432 3345555 7999999999998743211 12356889999999876 788888888887643
Q ss_pred ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHH
Q 014196 268 TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLL 347 (429)
Q Consensus 268 ~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL 347 (429)
...++.|++++. +.++.++..|+.+|..+...++ .+++.|+.++.+.++.++..|++.|
T Consensus 158 -----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLK-DPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHT-CSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 124458999998 7888999999999998854333 3578899999999999999999999
Q ss_pred HHHHh
Q 014196 348 QWFKD 352 (429)
Q Consensus 348 ~~l~~ 352 (429)
..+.+
T Consensus 217 ~~~~~ 221 (280)
T 1oyz_A 217 SYRKD 221 (280)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 88874
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.01 E-value=3.3e-08 Score=103.65 Aligned_cols=265 Identities=11% Similarity=0.134 Sum_probs=159.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch--
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN-- 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n-- 148 (429)
...++.+.+.|.+.++.+|+.|+.++..+.+.+++ .+.+.|.++.|..+|.++|+.++..|+.+|..++.++.+.
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 34566788888888999999999999999987665 3334678999999999999999999999999998875321
Q ss_pred -------HHHHHh----------------------------cCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccc
Q 014196 149 -------KAIMVE----------------------------AGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIP 192 (429)
Q Consensus 149 -------k~~iv~----------------------------~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~ 192 (429)
-..++. ...++.+..++++.+..++.+|+.++..+...- .+...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBS
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHH
Confidence 111111 134556666677777888888999998886321 11111
Q ss_pred cc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-CCChhHH-------------------------Hhc----Cc
Q 014196 193 LS--SSEILPFLVGILESGSSVETKELCIGALYNLSAV-LDNARPM-------------------------VSN----GV 240 (429)
Q Consensus 193 i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~~n~~~i-------------------------v~~----G~ 240 (429)
+. ...+.++|+.++. +++ .++..|+.+|..+... ++-.... +.. .+
T Consensus 277 ~~~~~~~~~~~L~~L~~-~d~-~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~i 354 (591)
T 2vgl_B 277 YNMLLKKLAPPLVTLLS-GEP-EVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQV 354 (591)
T ss_dssp HHHHHHHTHHHHHHHTT-SCH-HHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CCc-cHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHH
Confidence 11 1245677777664 454 6888888888888753 2211100 001 12
Q ss_pred HHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHH
Q 014196 241 VHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDK 318 (429)
Q Consensus 241 v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~ 318 (429)
++.|..++.+.+ +++..++..+..++. .+..... +++.|++++. .........++.++..+....++.
T Consensus 355 v~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~------~v~~Ll~ll~-~~~~~v~~e~i~~l~~ii~~~p~~--- 424 (591)
T 2vgl_B 355 LAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER------CVSTLLDLIQ-TKVNYVVQEAIVVIRDIFRKYPNK--- 424 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH------HHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHSCSS---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH------HHHHHHHHHc-ccchHHHHHHHHHHHHHHHHCcch---
Confidence 223333333333 455555555555554 2211111 1235555555 334444444444444444322211
Q ss_pred HHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHh
Q 014196 319 MAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 319 i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~~ 352 (429)
...+++.|++.+.. ..+.++..+.|+|+.+++
T Consensus 425 --~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~ 457 (591)
T 2vgl_B 425 --YESIIATLCENLDSLDEPDARAAMIWIVGEYAE 457 (591)
T ss_dssp --CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred --HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccc
Confidence 24567777777764 467777778887776654
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=116.99 Aligned_cols=194 Identities=20% Similarity=0.183 Sum_probs=145.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHH-HhhcCCCHHHHHHHHHHHHHhccCCC-chH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLV-SMVSTEVIGRRRAAIKALIQLANGTY-TNK 149 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv-~lL~s~~~~~~~~A~~aL~nLa~~~~-~nk 149 (429)
..+..+++.|+++++..|..|+.+|.+++. ++.+|+.+...|+|.+++ .+|.+++.+++++|+++|.||+.+.. +..
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 356788999999999999999999999996 788999999999998765 57888999999999999999997742 357
Q ss_pred HHHHhcCccchhhhhccCCC--------------H-------HHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhh
Q 014196 150 AIMVEAGILTKLPKNVDAVD--------------E-------STRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILE 207 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~--------------~-------~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~ 207 (429)
..+++.|++++|..+++... . +..+++..+|++|+... +....+...+.++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 78899999999998875311 1 12234567888988654 33345667899999999986
Q ss_pred cC--CcHHHHHHHHHHHHHhccCCCCh-hHHHhcCcHH---HHHHhccCCcchHHHHHHHHHHhh
Q 014196 208 SG--SSVETKELCIGALYNLSAVLDNA-RPMVSNGVVH---TLLKLCSMKERLSEKSLATLGNLV 266 (429)
Q Consensus 208 ~~--~~~~~~~~A~~aL~nLs~~~~n~-~~iv~~G~v~---~Lv~lL~~~~~~~~~a~~~L~~La 266 (429)
+. .+.+++..|+.+|++|+...... ..+.+.|... .++.+..+.+..+..++++|.|+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 53 23468889999999999865443 5566655433 333333343466677888888874
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.8e-10 Score=120.44 Aligned_cols=270 Identities=17% Similarity=0.185 Sum_probs=184.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch-
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE--LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN- 148 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n- 148 (429)
..++.+++.+.+.++.+|..|+..|..+....+. .+.. .+.++.|+.++.+++++++..|+++|.+++......
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 3566677777778899999999999887754432 1211 256888999999999999999999999998764211
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhh----------cC-------
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILE----------SG------- 209 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~----------~~------- 209 (429)
+..+ .+.++.+..++.+.+.+++..|+..+..++.....+..+. -...+|.|+..+. .+
T Consensus 251 ~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 251 LPHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp GGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred HHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 1111 2467777888888888889999888888885432222111 1245677776662 11
Q ss_pred ----CcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcH-HHHhcCCCChH
Q 014196 210 ----SSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGK-KAMEDSPLVPE 283 (429)
Q Consensus 210 ----~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~-~~i~~~~~i~~ 283 (429)
....++..|..+|..|+..... .++ ..++|.+..++.+.+ .+++.|+.+|.+++...... .... ..+.+
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~ 403 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIP 403 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHH
Confidence 1113577888899888864321 222 246777777787766 88999999999998753211 1111 23445
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.|+..+. +.++.++..|+.+|..++...........-.++++.|+..+.+.++.++..|++.|..+.+
T Consensus 404 ~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 404 HLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHHHHTT-CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 8888888 7899999999999999886321110011112578889998888899999999999888875
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.97 E-value=7.3e-09 Score=104.04 Aligned_cols=273 Identities=12% Similarity=0.035 Sum_probs=183.4
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhc-hHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCC
Q 014196 72 VLLQKSVKRLHFG--SWEEKEMAAKEIEKLAKED-VKIKKLMAELGVIQMLVSMVSTE--VIGRRRAAIKALIQLANGTY 146 (429)
Q Consensus 72 ~~l~~lv~~L~~~--~~~~~~~Aa~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~ 146 (429)
..++.++..+.++ ++..+..|+..|..++++. ++.-.... ..+++.++.+|.++ ++.++..|+.++.++...-+
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4688899999888 8899999999999998753 21100011 23678889999887 79999999999998754321
Q ss_pred chH-HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCC--ccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 147 TNK-AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANT--HIPLSSSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 147 ~nk-~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
.+- ......-.++.+...+...+.+.+..++.+|..+...... ...+ ..+.++.++..+.+.+. .++..|+..+.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~-~v~~~a~~~l~ 284 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDID-EVALQGIEFWS 284 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSH-HHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCch-HHHHHHHHHHH
Confidence 110 0111111345556666777788888888888888754321 1111 11678888888877665 78899999988
Q ss_pred HhccCC------------------CChhHHHh---cCcHHHHHHhccCC-------c-chHHHHHHHHHHhhCChhcHHH
Q 014196 224 NLSAVL------------------DNARPMVS---NGVVHTLLKLCSMK-------E-RLSEKSLATLGNLVVTSTGKKA 274 (429)
Q Consensus 224 nLs~~~------------------~n~~~iv~---~G~v~~Lv~lL~~~-------~-~~~~~a~~~L~~La~~~e~~~~ 274 (429)
+++... .....+++ ...+|.++..|.+. + .++..|..+|..++..-. . .
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~-~ 362 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D-D 362 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T-T
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-H-H
Confidence 887542 01111222 34677777777531 2 577788888888876321 1 2
Q ss_pred HhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCH-HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 275 MEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSS-EQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 275 i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~-~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
+.. .+.+.+.+.+. +.+...++.|+.+|..++.+.. +.....+ ..++|.|+.++.+..+.+|..|+|.|..+.+.
T Consensus 363 ~~~--~~~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 363 IVP--HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 221 23346777777 6788999999999999987432 2111111 56899999999999999999999999988864
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-09 Score=116.33 Aligned_cols=193 Identities=11% Similarity=0.070 Sum_probs=146.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchh-hhhccCCCHHHHHHHHHHHHHhhccC--CCcc
Q 014196 115 VIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKL-PKNVDAVDESTRHEFGELLLSLSSLA--NTHI 191 (429)
Q Consensus 115 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~L-v~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~ 191 (429)
.|.|++..|+++|+..|..|+++|.||+.+. .++..+...|+|.++ ..+|...+.+++.+|+++|.||+... +.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4667889999999999999999999999865 688888899988775 55788888999999999999999764 4455
Q ss_pred ccccCCcHHHHHHhhhcCCc--------------------HHHHHHHHHHHHHhccCCC-ChhHHHhcCcHHHHHHhccC
Q 014196 192 PLSSSEILPFLVGILESGSS--------------------VETKELCIGALYNLSAVLD-NARPMVSNGVVHTLLKLCSM 250 (429)
Q Consensus 192 ~i~~~g~i~~Lv~lL~~~~~--------------------~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~ 250 (429)
.+...|++++|..+++.... .....+++.+|++||.... ....+...|+++.|+.+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 67789999999999864110 1233467889999997554 44678889999999998853
Q ss_pred C---c-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhccc-CCChhHHHHHHHHHHHHh
Q 014196 251 K---E-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTW-EEKPKCQELSAYILMILA 309 (429)
Q Consensus 251 ~---~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~-~~s~~~~e~A~~~L~~L~ 309 (429)
. . +++..++.+|+.++. +++..+.+.+.+... .+.-++.. ..+...+..++++|+++.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~-~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETH-VYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSC-HHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHH-HHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 2 2 788999999999998 577778888866542 22222210 234445677889999875
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-07 Score=99.38 Aligned_cols=255 Identities=13% Similarity=0.091 Sum_probs=181.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
.+.+++.+++.+...|+-+...+..+++.+++.. .-++..|..-|.++|+.++..|+.+|.++... +....+
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--~~~~~l- 122 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD--KITEYL- 122 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG--GGHHHH-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH--HHHHHH-
Confidence 6678888888899999989889999887665542 22467888899999999999999999998632 233333
Q ss_pred hcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCCh-
Q 014196 154 EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNA- 232 (429)
Q Consensus 154 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~- 232 (429)
++.+..++.+.++.+|..|+.++..+.... ...+.+.+.++.|.++|.+.++ .++..|+.+|..++......
T Consensus 123 ----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d~d~-~V~~~A~~aL~~i~~~~~~~~ 195 (591)
T 2vgl_B 123 ----CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIADSNP-MVVANAVAALSEISESHPNSN 195 (591)
T ss_dssp ----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSCSCH-HHHHHHHHHHHHHTTSCCSCC
T ss_pred ----HHHHHHHcCCCChHHHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCCCCh-hHHHHHHHHHHHHHhhCCCcc
Confidence 456788898888999999999999998633 2223345788999999988776 79999999999999765422
Q ss_pred hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 233 RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 233 ~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
......+.++.|+..+.+.+ -.+...+.+|..++.. ++.... +.+.+...+. +.++.++..|+.++..+..
T Consensus 196 ~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~------~l~~l~~~l~-~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 196 LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQS------ICERVTPRLS-HANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHH------HHHHHTTCSC-SSTTHHHHHHHHHHHHSCC
T ss_pred chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHH------HHHHHHHHHc-CCChHHHHHHHHHHHHHhh
Confidence 11122355777888777664 4555666677666542 222222 2336777777 7888899999999998864
Q ss_pred ---CCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 311 ---QSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 311 ---~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.+++..+.+. ..+.+.|+.++. +++.+|..|...|..+..
T Consensus 269 ~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 269 LLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp SCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 2333333333 245688887764 788899999887776664
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.9e-08 Score=102.89 Aligned_cols=264 Identities=13% Similarity=0.085 Sum_probs=182.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
..++.+...+..+++.++..|+..|..++..-+.. ......+|.|..++.+++..++..|+.+|..++.... . .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~-~- 237 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP-Q-E- 237 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC-H-H-
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC-H-H-
Confidence 34555566667778999999999999988654321 2234678899999999999999999999999886542 1 1
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCC
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDN 231 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n 231 (429)
......+|.+..+++..+..+|..++.+|..++..... .......+|.+.+++.+.+. .++..|+.+|..++..-..
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEA-EVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHhCh
Confidence 12234677777888877788899999888888743211 11123568999999988776 7999999999998864322
Q ss_pred h--hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHH
Q 014196 232 A--RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMIL 308 (429)
Q Consensus 232 ~--~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L 308 (429)
. ....-...+|.+..++.|++ .++..++.+|..++..-. ..... ..+.+.+..++. +.++.++..++.+|..+
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~~--~~l~p~l~~~l~-d~~~~Vr~~a~~~l~~l 390 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNTI--EHLLPLFLAQLK-DECPEVRLNIISNLDCV 390 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHHH--HHTHHHHHHHHT-CSCHHHHHHHHTTCHHH
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHHH--HHHHHHHHHHhC-CCchHHHHHHHHHHHHH
Confidence 1 11233467888888888876 788888888887765211 11111 124457888887 67788898888888877
Q ss_pred hhC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 309 AHQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 309 ~~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
+.. ..+. ....++|.|..++.+.+.+++..+...|..+.+
T Consensus 391 ~~~~~~~~----~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 391 NEVIGIRQ----LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp HHHSCHHH----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHH----HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 752 2211 112456777777777777777777777766654
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-08 Score=102.99 Aligned_cols=301 Identities=10% Similarity=0.055 Sum_probs=197.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch-HHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV-KIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
.++.++..+..++++++..|+..|..++..-+ ..+....-...+|.+..++.+.++.++..++++|..++..-. ...
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~ 359 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG--KDN 359 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--HhH
Confidence 35666667777777788888887777765332 111112224567888999999999999999999999875421 111
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCC
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDN 231 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n 231 (429)
.....+|.+..+++..+.++|..++.+|..+...-... ......+|.|..++.+.+. .++..++.+|..++..-..
T Consensus 360 -~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~ 435 (588)
T 1b3u_A 360 -TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAKW-RVRLAIIEYMPLLAGQLGV 435 (588)
T ss_dssp -HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHHHCG
T ss_pred -HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHcCH
Confidence 22346777888888877888888887777666332110 0123468888888877765 7899999999988752111
Q ss_pred hhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 232 ARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 232 ~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
.......+|.++.+|.|.+ .+++.|+.+|..++..-... .+. ..+.+.|++++. +.+...+..++.++..++.
T Consensus 436 --~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~--~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 436 --EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE-WAH--ATIIPKVLAMSG-DPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp --GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-HHH--HHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch-hHH--HHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHH
Confidence 1122346788899998876 78899999999887632111 111 234457888776 6788899999999998875
Q ss_pred CCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc-ccCCCCCCCCCccccccCCCCChhhhHHHHHHHHH
Q 014196 311 QSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER-QAKMGPHSGPQTRRVSIGSPVSPREAQEGKKMMKN 389 (429)
Q Consensus 311 ~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~ 389 (429)
.- ........++|.|+.++.+..+.+|..+.+.|..+...- ..-..+...|.+. ....+.+.+.+..+..|++.
T Consensus 510 ~~---~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~--~l~~d~d~~vr~~a~~al~~ 584 (588)
T 1b3u_A 510 VC---GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILE--KLTQDQDVDVKYFAQEALTV 584 (588)
T ss_dssp HH---HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHH--HHTTCSSHHHHHHHHHHHHH
T ss_pred hc---CHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHH--HHcCCCchhHHHHHHHHHHH
Confidence 31 111233457899999999889999999999998887521 1000000001111 12233366777777777765
Q ss_pred H
Q 014196 390 L 390 (429)
Q Consensus 390 ~ 390 (429)
+
T Consensus 585 l 585 (588)
T 1b3u_A 585 L 585 (588)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-06 Score=89.67 Aligned_cols=276 Identities=12% Similarity=0.058 Sum_probs=174.2
Q ss_pred ccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHH
Q 014196 38 EKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQ 117 (429)
Q Consensus 38 ~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~ 117 (429)
.+|+.+|++..-...... +.. .+...-.+..+.+.|.++|+..+..|+..|..+.. ++. . ...++
T Consensus 81 s~~~~~Krl~Yl~~~~~~------~~~--~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~----~-~~l~~ 145 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLL------DER--QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEM----C-RDLAG 145 (618)
T ss_dssp SSSHHHHHHHHHHHHHHC------CCC--HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHH----H-HHHHH
T ss_pred CCchHHHHHHHHHHHHHh------CCC--cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHH----H-HHHHH
Confidence 366677777666555441 000 11123467788889999999999999999998873 222 2 24578
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCC-ccccccC
Q 014196 118 MLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANT-HIPLSSS 196 (429)
Q Consensus 118 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~-~~~i~~~ 196 (429)
.+..+|.+.++.++..|+.++.++...+.+ +++ +.++.+..+|...+..++..|+.+|..++..+.. ... -.
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p~----~v~-~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~--~~ 218 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAVHVIRKVPE----LME-MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH--FR 218 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHCGG----GGG-GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH--HH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHChH----HHH-HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH--HH
Confidence 899999999999999999999999876532 222 6788888899888888888888999999854311 011 13
Q ss_pred CcHHHHHHhhhc---------------CCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccC------Cc-ch
Q 014196 197 EILPFLVGILES---------------GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSM------KE-RL 254 (429)
Q Consensus 197 g~i~~Lv~lL~~---------------~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~------~~-~~ 254 (429)
..+|.|+++|.+ .++ -.+...+.+|..++...... ....++.|..++.. .. .+
T Consensus 219 ~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 219 KLVPQLVRILKNLIMSGYSPEHDVSGISDP-FLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp TTHHHHHHHHHHHHHSCCCTTTCSSSSSCH-HHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccccccCCCCC-hHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHH
Confidence 568888888764 233 46777888888888653221 11233344444321 11 55
Q ss_pred HHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc
Q 014196 255 SEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL 334 (429)
Q Consensus 255 ~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~ 334 (429)
+-.|+.++..+...++.+.. + ...|..++. +.++..+..|+.+|..++...+. +++ ...+.++.++.+
T Consensus 294 ~~ea~~~i~~l~~~~~l~~~-----a-~~~L~~~L~-~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 294 LYETVLTIMDIKSESGLRVL-----A-INILGRFLL-NNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHHSCCCHHHHHH-----H-HHHHHHHHT-CSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHGGGS
T ss_pred HHHHHHHHHhcCCCHHHHHH-----H-HHHHHHHHh-CCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHHccC
Confidence 66666666665443322221 1 235666666 56667777777777776654322 121 134555666666
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 014196 335 GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 335 ~~~~~k~~A~~lL~~l~~ 352 (429)
.+..+|++|..+|..+..
T Consensus 362 ~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVN 379 (618)
T ss_dssp SCHHHHHHHHHHHHHHCC
T ss_pred CChhHHHHHHHHHHHHcc
Confidence 666666666666655554
|
| >2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-08 Score=78.30 Aligned_cols=53 Identities=17% Similarity=0.042 Sum_probs=45.9
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhccc--cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKSA--RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~~--~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|..|++.- -|+|||| |++|+..... +|++++....|+||++||++|+.|+..+
T Consensus 24 m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 24 MTDPVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp CSSEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred hcCCeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 56677655 5899999 9999985433 9999999889999999999999999877
|
| >1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-08 Score=80.04 Aligned_cols=54 Identities=15% Similarity=-0.008 Sum_probs=46.1
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhccc--cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKSA--RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~~--~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|..|+..--.|+|||| |++|+..... +|+++|...+|+||++||++|+.|+..+
T Consensus 32 m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 32 MCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred ccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 5667775444499999 9999986443 9999999889999999999999999987
|
| >3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-08 Score=108.18 Aligned_cols=54 Identities=19% Similarity=0.046 Sum_probs=49.0
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhccc--cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKSA--RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~~--~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|.-|+.-=.+|+|||| |++||.++.+ .|+++|...+++||++||+.|++||..+
T Consensus 901 M~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~ 958 (968)
T 3m62_A 901 MKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 958 (968)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred HhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence 6778887777799999 9999987655 9999999999999999999999999877
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.53 E-value=7.3e-06 Score=89.00 Aligned_cols=310 Identities=12% Similarity=0.024 Sum_probs=195.2
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhc-hHHHHHHHh--cCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccC
Q 014196 72 VLLQKSVKRLHFG--SWEEKEMAAKEIEKLAKED-VKIKKLMAE--LGVIQMLVSMVSTE--VIGRRRAAIKALIQLANG 144 (429)
Q Consensus 72 ~~l~~lv~~L~~~--~~~~~~~Aa~~L~~La~~~-~~~r~~i~~--~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~ 144 (429)
..++.++..+.++ ++..+..++..+..++..- ++ .+.. ...++.+...+.++ +..++..|+.+|.++...
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3578888889888 8889999999999998652 21 1222 34577788888876 689999999999998754
Q ss_pred CCch-HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCc-cccccCCcHHHHHHhhhcCCcHHHHHHHHHHH
Q 014196 145 TYTN-KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH-IPLSSSEILPFLVGILESGSSVETKELCIGAL 222 (429)
Q Consensus 145 ~~~n-k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 222 (429)
-..+ .........++.+...+...+.+.+..++.+|..+....... ........++.+...+.+.+. .++..|+..+
T Consensus 205 ~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~v~~~al~~l 283 (876)
T 1qgr_A 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID-EVALQGIEFW 283 (876)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH-HHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHH
Confidence 2111 111111124556666677777888888888888887532111 011123678888887766665 6888899888
Q ss_pred HHhccCCC-------------------ChhHH--HhcCcHHHHHHhccC-------Cc-chHHHHHHHHHHhhCChhcHH
Q 014196 223 YNLSAVLD-------------------NARPM--VSNGVVHTLLKLCSM-------KE-RLSEKSLATLGNLVVTSTGKK 273 (429)
Q Consensus 223 ~nLs~~~~-------------------n~~~i--v~~G~v~~Lv~lL~~-------~~-~~~~~a~~~L~~La~~~e~~~ 273 (429)
.+++.... ....+ .-...+|.++..|.. .+ .++..+..+|..++..-. .
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~ 361 (876)
T 1qgr_A 284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--G
T ss_pred HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--H
Confidence 88875310 00111 113467778887752 12 677778888888776321 1
Q ss_pred HHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCC-HHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 274 AMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS-SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 274 ~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~-~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.+.. .+.+.+.+.+. +.+...++.|+.+|..++.+. ++...... ..++|.|+..+.+.++.++..|+|.|..+.+
T Consensus 362 ~~~~--~~l~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 362 DIVP--HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp GGHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hhHH--HHHHHHHHHcc-CCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1221 23345667776 678899999999999998753 23222222 3479999999998899999999999988886
Q ss_pred ccccCCCCCCCCCcccc-----ccCCCCChhhhHHHHHHHHHHHHHH
Q 014196 353 ERQAKMGPHSGPQTRRV-----SIGSPVSPREAQEGKKMMKNLVQQS 394 (429)
Q Consensus 353 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~k~~l~~~~~~~ 394 (429)
.-.... . ..|....+ ..... ..+.+..+-+++..+++.+
T Consensus 438 ~~~~~~-~-~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 438 LLPEAA-I-NDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HCGGGT-S-STTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHH
T ss_pred hCchhc-c-cHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHh
Confidence 421100 0 01122221 11111 2555666667777776654
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-06 Score=94.44 Aligned_cols=272 Identities=11% Similarity=0.086 Sum_probs=175.8
Q ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhchHH-HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 73 LLQKSVKRLHFG--SWEEKEMAAKEIEKLAKEDVKI-KKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 73 ~l~~lv~~L~~~--~~~~~~~Aa~~L~~La~~~~~~-r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.++.++..+..+ +...+..|+..+..++..-..+ .........++.+...+.+.+.+++..++.+|..++......-
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 252 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM 252 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 455566677765 5788899999999877532211 0011111257778888888899999999999999886543221
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC------------C----ccc--cc---cCCcHHHHHHhhhc
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN------------T----HIP--LS---SSEILPFLVGILES 208 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~------------~----~~~--i~---~~g~i~~Lv~lL~~ 208 (429)
...+....++.+...+...+..++..+...+.+++.... . +.. +. -...+|.+++.+..
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 332 (876)
T 1qgr_A 253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332 (876)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence 222233567777777766677788888777777764310 0 000 00 12356777777753
Q ss_pred C------CcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCCh--hcHHHHhcCC
Q 014196 209 G------SSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTS--TGKKAMEDSP 279 (429)
Q Consensus 209 ~------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~--e~~~~i~~~~ 279 (429)
. +....+..|..+|..++..-. ..++ ..+++.+...+.+.+ .+++.++.+|..++... +.......
T Consensus 333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~-- 407 (876)
T 1qgr_A 333 QDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI-- 407 (876)
T ss_dssp CCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH--
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHH--
Confidence 1 122578888889988876322 1222 245666777777766 88899999999998742 32222222
Q ss_pred CChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHH---HHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 280 LVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQ---RDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 280 ~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~---~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
.+.+.|+..+. +.++..+..|+.+|..++...+.. ...+ ..+++.|+..+.+. ++++..|++.|..+.+.
T Consensus 408 ~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 24457888887 788999999999999998642211 0111 24677888888764 88999999988887754
|
| >2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-08 Score=79.28 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=45.8
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhccc--cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKSA--RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~~--~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|..|++.- -|+|||| |++|+..... +|+++|...+|+||++||++|+.|+..|
T Consensus 39 m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 39 MTDPVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREK 95 (100)
T ss_dssp CSSEEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTT
T ss_pred ccCCeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHHHh
Confidence 55677655 5899999 9999975433 9999999889999999999999999887
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=2.3e-06 Score=90.14 Aligned_cols=261 Identities=13% Similarity=0.083 Sum_probs=163.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
...++.+.+.|.+.++.+|+.|+..+..+.+.+++... +.++.|..+|.+.|+.++..|+.+|..++..+.+...
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 34578888889999999999999999999988775322 6788899999999999999999999999876421111
Q ss_pred HHHhcCccchhhhhccC---------------CCHHHHHHHHHHHHHhhccCC---------------------C-----
Q 014196 151 IMVEAGILTKLPKNVDA---------------VDESTRHEFGELLLSLSSLAN---------------------T----- 189 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~---------------~~~~~~~~aa~~L~~Ls~~~~---------------------~----- 189 (429)
.+ ...+|.++.+|.. .++-.+.....+|..++..+. +
T Consensus 216 ~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV 293 (618)
T 1w63_A 216 HF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAI 293 (618)
T ss_dssp HH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 11 1344545444431 122233333333333332110 0
Q ss_pred -------------ccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chH
Q 014196 190 -------------HIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLS 255 (429)
Q Consensus 190 -------------~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~ 255 (429)
...+ ...++..|..+|.+.++ .++..|+.+|..++... ..++ ....+.++.++.|++ .++
T Consensus 294 ~~ea~~~i~~l~~~~~l-~~~a~~~L~~~L~~~d~-~vr~~aL~~L~~i~~~~---p~~~-~~~~~~i~~~l~d~d~~Ir 367 (618)
T 1w63_A 294 LYETVLTIMDIKSESGL-RVLAINILGRFLLNNDK-NIRYVALTSLLKTVQTD---HNAV-QRHRSTIVDCLKDLDVSIK 367 (618)
T ss_dssp HHHHHHHHHHSCCCHHH-HHHHHHHHHHHHTCSST-TTHHHHHHHHHHHHHHH---HHHH-GGGHHHHHHGGGSSCHHHH
T ss_pred HHHHHHHHHhcCCCHHH-HHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHhhC---HHHH-HHHHHHHHHHccCCChhHH
Confidence 0000 01256677777777666 57777888887777532 1222 235667888888876 889
Q ss_pred HHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC---CH-HHHHHH----HhCC----
Q 014196 256 EKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ---SS-EQRDKM----AKSG---- 323 (429)
Q Consensus 256 ~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~---~~-~~~~~i----~~~G---- 323 (429)
..++.+|..++.... ...++ ..|.+++. +.+...+..++.++..+|.. +. .+...+ ...|
T Consensus 368 ~~alelL~~l~~~~n-v~~iv------~eL~~~l~-~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~ 439 (618)
T 1w63_A 368 RRAMELSFALVNGNN-IRGMM------KELLYFLD-SCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVR 439 (618)
T ss_dssp HHHHHHHHHHCCSSS-THHHH------HHHHHHHH-HCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHHHHHHHccccc-HHHHH------HHHHHHHH-hCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhH
Confidence 999999999887432 23333 35667776 56777888888888777752 10 111111 1111
Q ss_pred --------------------chHHHHHHhhc--CCHHHHHHHHHHHHHHHh
Q 014196 324 --------------------IVHVSLQLALL--GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 324 --------------------~v~~L~~ll~~--~~~~~k~~A~~lL~~l~~ 352 (429)
+++.|++.+.. ......+.+.|+|+.+++
T Consensus 440 ~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 440 DDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp SSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 56667777775 234444568899888886
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.4e-06 Score=75.34 Aligned_cols=208 Identities=14% Similarity=0.103 Sum_probs=152.0
Q ss_pred hhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc-hHHHHHHHhcCcHHHHH
Q 014196 42 TLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED-VKIKKLMAELGVIQMLV 120 (429)
Q Consensus 42 ~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~-~~~r~~i~~~G~i~~Lv 120 (429)
-+|..+..|.-.-.++-+ ......+..++..|+..|+..+.+++..|..+-+.- ...+...++ ..+|.++
T Consensus 11 ~lre~L~sWkiK~a~ela--------~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI 81 (265)
T 3b2a_A 11 ELRELVLSWQILDAVSLA--------LEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFI 81 (265)
T ss_dssp HHHHHHHTTCHHHHHHHH--------HHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHH--------HhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHH
Confidence 477778888753311111 113456888999999999999999999999998873 234444444 3599999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHH
Q 014196 121 SMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILP 200 (429)
Q Consensus 121 ~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~ 200 (429)
.++.+.|..+.-.|+.+|..|-.+.+-........ +..|..++.+++.-.+.+++..+..+..... ..+.+.
T Consensus 82 ~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl--~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~ 153 (265)
T 3b2a_A 82 NALSQENEKVTIKALRALGYLVKDVPMGSKTFLKA--AKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRT 153 (265)
T ss_dssp HTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHH--HHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHH
T ss_pred HHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHH
Confidence 99999999999999999999987764344444432 3446788888888889999999998832222 234577
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCCh
Q 014196 201 FLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTS 269 (429)
Q Consensus 201 ~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~ 269 (429)
.|.+++.+.+. ++|..++++|.|++..+++...+ .+++.-+-++|+..+ .+++.|+.+|..+...|
T Consensus 154 ~l~sLl~Skd~-~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 154 YINELVVSPDL-YTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHTCSSH-HHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhCCCh-hHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 88999977776 89999999999999866554322 234555666777666 89999999999888753
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.1e-06 Score=85.92 Aligned_cols=259 Identities=10% Similarity=0.044 Sum_probs=170.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCC-----
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE--VIGRRRAAIKALIQLANGTY----- 146 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~----- 146 (429)
+..++..+.+++.+.|..|-..|..+.+.+ ..|.+..|+.+|.+. ++.+|..|+..|.|+.....
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 456777777889999999999998866421 124567778888764 68999999999999864421
Q ss_pred -----------chHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcC--CcHH
Q 014196 147 -----------TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESG--SSVE 213 (429)
Q Consensus 147 -----------~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~ 213 (429)
+.+..|. ..|+..+.+.+... ..++.++..++..+.... .-.+.+|.|++.+.++ +. .
T Consensus 75 ~~~~~~~~l~~~~~~~ik-----~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~-~ 145 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVK-----NYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTE-H 145 (462)
T ss_dssp HHHHHHHTSCHHHHHHHH-----HHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCH-H
T ss_pred HHHhhhhcCCHHHHHHHH-----HHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCH-H
Confidence 1122221 22455565555555 567777888775431110 1256899999999987 65 7
Q ss_pred HHHHHHHHHHHhccCC--CChhHHHhcCcHHHHHHhccCC--c-chHHHHHHHHHHhhCC-hhcH--HHHhcCCCChHHH
Q 014196 214 TKELCIGALYNLSAVL--DNARPMVSNGVVHTLLKLCSMK--E-RLSEKSLATLGNLVVT-STGK--KAMEDSPLVPESL 285 (429)
Q Consensus 214 ~~~~A~~aL~nLs~~~--~n~~~iv~~G~v~~Lv~lL~~~--~-~~~~~a~~~L~~La~~-~e~~--~~i~~~~~i~~~L 285 (429)
.+..|+.+|..++..- +...... ..+++.++.+|.+. + .++..|+.++.++... .+.- ..+. ..+.+.|
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~l~~~l 222 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVV 222 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHHHHH
Confidence 8999999999998632 1111122 35778888888876 4 7888899999887642 1110 0010 1123355
Q ss_pred HHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 286 IEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 286 v~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
.+.+. +.++..+..++.+|..++...++.-...+..++++.++..+.+.++.++..|.+.+..+.+.
T Consensus 223 ~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 223 CEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHTT-CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 66666 67888999999999988864332111111126778888888888899999999877777653
|
| >2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C | Back alignment and structure |
|---|
Probab=98.44 E-value=7e-08 Score=84.57 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=46.5
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHh-cc-c-cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQS-KS-A-RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~-g~-~-~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|..|++. --|+|||| |++|+.. |. + +|+++|...+|+||++||++|+.|+..|
T Consensus 116 m~DPV~~-~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 116 MREPCIT-PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp CSSEEEC-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHC
T ss_pred CCCCeEC-CCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHC
Confidence 5667776 45899999 9999987 45 3 9999999889999999999999999988
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.4e-06 Score=89.25 Aligned_cols=307 Identities=8% Similarity=0.096 Sum_probs=188.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhch-H-HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc---
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDV-K-IKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT--- 147 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~-~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~--- 147 (429)
.++.+...+.+.++..+..|+..+..++.... + ....+ ..+++.|+..+.++++.++..++++|..++..-..
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 45556666777889999999999999986432 2 22222 24689999999999999999999999998754210
Q ss_pred hHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC--Cccccc--cCCcHHHHHHhhhcCCc-HHHHHHHHHHH
Q 014196 148 NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN--THIPLS--SSEILPFLVGILESGSS-VETKELCIGAL 222 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~--~~g~i~~Lv~lL~~~~~-~~~~~~A~~aL 222 (429)
.... -...++.++..+... ...+..++.+|.+++.... ....+. -...++.|++++.+.+. ..++..++.+|
T Consensus 448 ~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 448 PQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 0111 123466677777664 7788888888888875421 011221 13457788888875432 36888899999
Q ss_pred HHhccCCCC-hhHHHhcCcHHHHHHhccCC---------------c-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHH
Q 014196 223 YNLSAVLDN-ARPMVSNGVVHTLLKLCSMK---------------E-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPES 284 (429)
Q Consensus 223 ~nLs~~~~n-~~~iv~~G~v~~Lv~lL~~~---------------~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~ 284 (429)
..+...... ....+ ...+|.++..+.+. . .++..++.+|..++.. ...-.... +.+.+.
T Consensus 525 ~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~ 601 (861)
T 2bpt_A 525 TTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGL 601 (861)
T ss_dssp HHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHH
T ss_pred HHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHH
Confidence 998864332 22222 24677777766421 1 4566788888887752 22111111 123346
Q ss_pred HHHhcccCCCh-hHHHHHHHHHHHHhhCC-HHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCCCC
Q 014196 285 LIEILTWEEKP-KCQELSAYILMILAHQS-SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHS 362 (429)
Q Consensus 285 Lv~~L~~~~s~-~~~e~A~~~L~~L~~~~-~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 362 (429)
+++.+. ..+. ..++.+..++..++... ......+- .++|.|+..+...++.++..|..++..+.+.-. ...
T Consensus 602 l~~~l~-~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~ 674 (861)
T 2bpt_A 602 FFRLLE-KKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQVDSPVSITAVGFIADISNSLE----EDF 674 (861)
T ss_dssp HHHHHH-STTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG----GGG
T ss_pred HHHHHc-cCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc----hhc
Confidence 677776 4445 78888888888887531 22222222 378889988877778889888888877765321 111
Q ss_pred CCCcccc-----c-cCCC-CChhhhHHHHHHHHHHHHHH
Q 014196 363 GPQTRRV-----S-IGSP-VSPREAQEGKKMMKNLVQQS 394 (429)
Q Consensus 363 ~~~~~~~-----~-~~~~-~~~~~~~~~k~~l~~~~~~~ 394 (429)
.|.+..+ . .... ...+.+..+-.++..|++.+
T Consensus 675 ~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~ 713 (861)
T 2bpt_A 675 RRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNI 713 (861)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHh
Confidence 1122221 1 1112 13556777777777777654
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.39 E-value=6e-07 Score=101.84 Aligned_cols=268 Identities=11% Similarity=0.098 Sum_probs=177.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
..+..++..+.+++.+.|..|...|.+..+.+...-..-.....++.|+..|.+.++.+|..|+.+|.+++.... . ..
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~-~-~~ 83 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-E-YQ 83 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-H-HH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC-H-HH
Confidence 458889999999999999999999988664321100000012347889999999999999999999999987642 2 11
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCc----ccc--ccCCcHHHHHHhhhc-CCcHHHHHHHHHHHHH
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH----IPL--SSSEILPFLVGILES-GSSVETKELCIGALYN 224 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~----~~i--~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~n 224 (429)
+ ...++.|...+.+.+...|..++.+|..++..-... ... .....+|.|.+.+.+ ++. ..+..|+.+|.+
T Consensus 84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~-~~~~~al~~l~~ 160 (1230)
T 1u6g_C 84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDV-SVQLEALDIMAD 160 (1230)
T ss_dssp H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCH-HHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHH
Confidence 1 124556677777767777777777888877433211 000 124578899998884 555 789999999999
Q ss_pred hccC-CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHH
Q 014196 225 LSAV-LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSA 302 (429)
Q Consensus 225 Ls~~-~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~ 302 (429)
++.. +...... -...++.++..|.+++ .+++.|+.+|..++..... .+ ...+.+.+++.|....+...+..++
T Consensus 161 ~~~~~~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~--~~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 161 MLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV--FVDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHhHhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HH--HHHHHHHHHHHhccCCchhHHHHHH
Confidence 8853 2222111 1356777778887765 8899999999998874321 12 2334457777776322334566677
Q ss_pred HHHHHHhhCCHHHHHHHHh--CCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 303 YILMILAHQSSEQRDKMAK--SGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 303 ~~L~~L~~~~~~~~~~i~~--~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.++..++...+. .+.. ..++|.++..+.+.++.+++.|.+.+..+.+
T Consensus 236 ~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 236 QCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888877753221 1111 4688999999988888889988888777665
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.38 E-value=3.5e-05 Score=83.41 Aligned_cols=272 Identities=12% Similarity=0.045 Sum_probs=177.3
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhch-HHHHHHH--hcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccC
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDV-KIKKLMA--ELGVIQMLVSMVSTE--VIGRRRAAIKALIQLANG 144 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~-~~r~~i~--~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~ 144 (429)
...++.++..+.++ ++..+..++..+..++++-. +.+ .+. -...++.++..+.++ ++.++..|+.+|.++...
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~ 211 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF 211 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 45688888999888 88899999999998886421 111 000 123467778888876 899999999999987432
Q ss_pred CCch-HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccccc--C-CcHHHHHHhhhcCCcHHHHHHHHH
Q 014196 145 TYTN-KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSS--S-EILPFLVGILESGSSVETKELCIG 220 (429)
Q Consensus 145 ~~~n-k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~--~-g~i~~Lv~lL~~~~~~~~~~~A~~ 220 (429)
-+.+ .........++.|...+.+.+.+.|..++.+|..+..... ..+.. . ..++.+...+.+.+. .++..|+.
T Consensus 212 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~-~vr~~a~~ 288 (861)
T 2bpt_A 212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY--TFMKPYMEQALYALTIATMKSPND-KVASMTVE 288 (861)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG--GGCHHHHHHTHHHHHHHHTTCSSH-HHHHHHHH
T ss_pred HHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHH
Confidence 1111 0000011245556666777778888888888888874321 11211 1 456666667766665 78999999
Q ss_pred HHHHhccCCCC-----------------h-hHHHhcCcHHHHHHhccCC-------c-chHHHHHHHHHHhhCChhcHHH
Q 014196 221 ALYNLSAVLDN-----------------A-RPMVSNGVVHTLLKLCSMK-------E-RLSEKSLATLGNLVVTSTGKKA 274 (429)
Q Consensus 221 aL~nLs~~~~n-----------------~-~~iv~~G~v~~Lv~lL~~~-------~-~~~~~a~~~L~~La~~~e~~~~ 274 (429)
.+..++..... . ...+ ..++|.++..|.+. + .++..+..+|..++..-. ..
T Consensus 289 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~ 365 (861)
T 2bpt_A 289 FWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NH 365 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--Hh
Confidence 99888764210 1 1111 45778888888642 1 466778888888876311 11
Q ss_pred HhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCC-HHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 275 MEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS-SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 275 i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~-~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
+.. .+.+.+.+.+. +.+...++.|+.+|..++.+. ++.....+. .+++.|+..+.+.++.++..|+|+|..+.+.
T Consensus 366 ~~~--~l~~~l~~~l~-~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 366 ILE--PVLEFVEQNIT-ADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp GHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHcC-CCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 111 12345666776 677889999999999998753 232222222 4788899988888999999999998888764
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.8e-06 Score=76.67 Aligned_cols=180 Identities=13% Similarity=0.141 Sum_probs=131.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhchHHH-HHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCCch-HHHH
Q 014196 76 KSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIK-KLMAELGVIQMLVSMVS-TEVIGRRRAAIKALIQLANGTYTN-KAIM 152 (429)
Q Consensus 76 ~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~n-k~~i 152 (429)
.+.+.+.+.++..|..|+..|..+....+..- ..+ ...++.|...|. +.+..++..|+.+|..|+..-... ...+
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 36777888899999999999999987532210 001 134777888884 889999999999999998543111 1111
Q ss_pred HhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc-cCCCC
Q 014196 153 VEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS-AVLDN 231 (429)
Q Consensus 153 v~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs-~~~~n 231 (429)
...+|.|...+...+..+|+.+..+|.++...... ...+|.|...|.+.++ .+|..++..|..+. .+...
T Consensus 97 --~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~-~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 97 --SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNP-SVKSETALFIARALTRTQPT 167 (242)
T ss_dssp --HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTTCCGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHHcCCC
Confidence 23678888888888888999999999998754321 2357888899988876 89999999999954 43211
Q ss_pred --hhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 232 --ARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 232 --~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
-...+ ...+|.|+.+|.|.. +++..|..+|..++.
T Consensus 168 ~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 12222 267899999998876 889999999988775
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00021 Score=75.14 Aligned_cols=279 Identities=11% Similarity=0.028 Sum_probs=171.3
Q ss_pred cchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHH
Q 014196 39 KSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQM 118 (429)
Q Consensus 39 PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~ 118 (429)
+|..+|++..-...... .. ..+...-.+..+.+.|.++|+..+-.|+..|.++.. ++.-. ..++.
T Consensus 86 ~~~~~Krl~YL~l~~~~-----~~---~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~ 150 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLV-----NS---NSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGE 150 (621)
T ss_dssp SCHHHHHHHHHHHHHSC-----CC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTH
T ss_pred CCHHHHHHHHHHHHHHc-----cC---CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHH
Confidence 77778887777665441 00 011123346778888999999999889998888853 33322 24788
Q ss_pred HHHhh--cCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccC
Q 014196 119 LVSMV--STEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSS 196 (429)
Q Consensus 119 Lv~lL--~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~ 196 (429)
+..+| .+.++-++..|+.++.++...++ ..+-..+.++.+..+|...++.++..|+.+|..++..+.. . -.
T Consensus 151 v~~~l~~~d~~~~VRK~A~~al~kl~~~~p---~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~--~~ 223 (621)
T 2vgl_A 151 IPKILVAGDTMDSVKQSAALCLLRLYRTSP---DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--E--FK 223 (621)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHHHHHHHCG---GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--H--HT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhCh---hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--H--HH
Confidence 89999 88899999999999999987653 2222247888999999888888888888899998854321 1 12
Q ss_pred CcHHHHHHhhh----cC-------------CcHHHHHHHHHHHHHhccCCC--ChhHHHhcCcHHHHHHhccCC------
Q 014196 197 EILPFLVGILE----SG-------------SSVETKELCIGALYNLSAVLD--NARPMVSNGVVHTLLKLCSMK------ 251 (429)
Q Consensus 197 g~i~~Lv~lL~----~~-------------~~~~~~~~A~~aL~nLs~~~~--n~~~iv~~G~v~~Lv~lL~~~------ 251 (429)
..+|.+++.|. .+ ++ =++...+..|..++..++ ....+.+ .++.++..+.+.
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~-w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l 300 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP-WLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKV 300 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESH-HHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCc-hHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccc
Confidence 34566665443 22 23 366667777777764321 1222222 333344322111
Q ss_pred -----c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCch
Q 014196 252 -----E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIV 325 (429)
Q Consensus 252 -----~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v 325 (429)
. .+.-.|+.++..+...++.....+ ..|..+|. +.++..+-.|+..|..++...+. .. ++. ...
T Consensus 301 ~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~------~~L~~~L~-~~~~niry~aL~~l~~l~~~~~~-~~-~~~-~~~ 370 (621)
T 2vgl_A 301 QHSNAKNAVLFEAISLIIHHDSEPNLLVRAC------NQLGQFLQ-HRETNLRYLALESMCTLASSEFS-HE-AVK-THI 370 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHSS-CSCHHHHHHHHHHHHHHTTCTTT-HH-HHH-TTH
T ss_pred cccchHHHHHHHHHHHHHhcCCcHHHHHHHH------HHHHHHhc-CCCcchHHHHHHHHHHHHhccCc-HH-HHH-HHH
Confidence 1 455555666666554443333222 25777776 56777777777777777764321 11 222 245
Q ss_pred HHHHHHhh-cCCHHHHHHHHHHHHHHHh
Q 014196 326 HVSLQLAL-LGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 326 ~~L~~ll~-~~~~~~k~~A~~lL~~l~~ 352 (429)
+.++.++. +.+..++.+|..+|..+..
T Consensus 371 ~~i~~~L~~d~d~~Ir~~aL~lL~~l~~ 398 (621)
T 2vgl_A 371 ETVINALKTERDVSVRQRAVDLLYAMCD 398 (621)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence 66666666 6666777777776655554
|
| >2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.9e-07 Score=70.11 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=44.6
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhcc------c--cccCC---CCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKS------A--RRRQN---EPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~------~--~T~~~---L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|..|++.-.=|+||+| |++|+..++ . +|+++ +...+|+||..|+++|+.|+..+
T Consensus 17 ~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 17 MKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred hcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 5567765335899999 999998752 2 88887 88889999999999999999876
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.10 E-value=2.3e-07 Score=77.29 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
...++.++..|.++++..+..|+..|..+.. ..++.|+.+|.++++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3447788889988888888888777765532 126899999999999999999999988752
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHh
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNL 225 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 225 (429)
..+++.|..++.+.+..+|..++.+|..+. +..+++.|+.++.+.+. .++..|+.+|.++
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~-~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTG-FARKVAVNYLETH 131 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCT-HHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCH-HHHHHHHHHHHhC
Confidence 124777888888888889999999988875 23468999999988776 7898888888653
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.7e-05 Score=70.60 Aligned_cols=181 Identities=12% Similarity=0.093 Sum_probs=128.7
Q ss_pred hhhhhccCCCHHHHHHHHHHHHHhhcc-CCCccccccCCcHHHHHHhhh-cCCcHHHHHHHHHHHHHhccCCCChhHHHh
Q 014196 160 KLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLSSSEILPFLVGILE-SGSSVETKELCIGALYNLSAVLDNARPMVS 237 (429)
Q Consensus 160 ~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~ 237 (429)
.+...+++.+...|..++..|..+... ++....- -...++.|...+. +.+. .++..|+.+|..|+..-...-.-.-
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~-~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNV-VLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 356677778888899998888888754 2211100 1246788888885 6666 7899999999999964222111112
Q ss_pred cCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhh-CCHH-
Q 014196 238 NGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAH-QSSE- 314 (429)
Q Consensus 238 ~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~-~~~~- 314 (429)
...+|.|+..+.|.. .+++.+..+|.+++..... . .+.+.|...+. +.++..++.++..|..+.. .+++
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-~------~ll~~l~~~l~-~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-E------AQQESIVESLS-NKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-H------HHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-H------HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCCC
Confidence 357899999999876 8889999999998874321 1 13346788888 7889999999999998543 3332
Q ss_pred -HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 315 -QRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 315 -~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
....+- .++|.|+.++.+..+.+|..|...+..+..
T Consensus 169 ~~~~~l~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLK--LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHH--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 122222 478999999999999999999998877775
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.05 E-value=6.5e-07 Score=74.48 Aligned_cols=119 Identities=15% Similarity=0.095 Sum_probs=87.2
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP 192 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 192 (429)
.+.++.|+.+|+++++.++..|+++|.++... .++.|+.++.+.+..+|..++.+|..+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 45688899999999999999999888765311 25778889998889999999888887652
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHH
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGN 264 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~ 264 (429)
..+++.|+.+|.+.+. .++..|+.+|.++. +.++++.|+.++.+.+ .++..|+.+|..
T Consensus 72 ---~~a~~~L~~~L~d~~~-~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSG-FVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCT-HHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCH-HHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3468999999998887 79999999999886 2357899999998776 677777776653
|
| >2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A | Back alignment and structure |
|---|
Probab=98.04 E-value=6.1e-07 Score=64.33 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=34.7
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhcc-c-cccCCCCCCCcccchhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKS-A-RRRQNEPNHNHEKSRTL 43 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~-~-~T~~~L~~~~L~PN~~L 43 (429)
|..|+..---|+|||| |++||.++. + +|+++|...+|+||++-
T Consensus 13 m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 13 PRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp CSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred CCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 4556665345899999 999997654 3 99999999999999874
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=73.18 Aligned_cols=188 Identities=10% Similarity=0.148 Sum_probs=129.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HhhhchHHHHHHHh-cCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCCC--chH-H
Q 014196 77 SVKRLHFGSWEEKEMAAKEIEK-LAKEDVKIKKLMAE-LGVIQMLVSMV-STEVIGRRRAAIKALIQLANGTY--TNK-A 150 (429)
Q Consensus 77 lv~~L~~~~~~~~~~Aa~~L~~-La~~~~~~r~~i~~-~G~i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~~--~nk-~ 150 (429)
+-..+.+.++..|++|+..|.. +....++....-.+ ...+..|...+ ++.+..++..|+.+|..|+.+-. .-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4456788899999999999999 87543221100011 13467788888 68899999999999999985321 111 2
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS-SSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
... -.+|.++..+......++..+..+|..+...-+.-.... -...++.|...|.+.+. .+|..++.+|..+....
T Consensus 101 y~~--~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~-~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 YVS--LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTP-QIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHH--HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHC
T ss_pred HHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHHHc
Confidence 222 257778888887778888877778887775321100000 11367888889988876 89999999999888644
Q ss_pred CCh-h---HHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 230 DNA-R---PMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 230 ~n~-~---~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
... . ..+....+|.|..++.|.+ ++++.|..+|..++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 321 1 2223578999999999876 889999888888764
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00021 Score=80.90 Aligned_cols=228 Identities=14% Similarity=0.091 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
....++.+++.|.+.++.+|..|+..|..++..-+. ..+ ..+++.|+..|.++++.+|..|+.+|..++.......
T Consensus 46 ~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcc
Confidence 456788899999988999999999999999864433 111 2347888899988888999999999998875532110
Q ss_pred -----HHHHhcCccchhhhhcc-CCCHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHH
Q 014196 150 -----AIMVEAGILTKLPKNVD-AVDESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGA 221 (429)
Q Consensus 150 -----~~iv~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~a 221 (429)
..-.-...+|.|...+. +.+...+..+..+|..++..... .+. -...++.|...|.+.+. .++..|+.+
T Consensus 122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~--~l~~~~~~ll~~l~~~L~~~~~-~vR~~a~~a 198 (1230)
T 1u6g_C 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLPQLTSPRL-AVRKRTIIA 198 (1230)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGGGGGCSSH-HHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHH
Confidence 11112356788888887 46678888888888888743211 111 13456777777877776 799999999
Q ss_pred HHHhccCCCChhHHHhcCcHHHHHHhccCC-c-chHHHHHHHHHHhhCC-hhcHHHHh-cCCCChHHHHHhcccCCChhH
Q 014196 222 LYNLSAVLDNARPMVSNGVVHTLLKLCSMK-E-RLSEKSLATLGNLVVT-STGKKAME-DSPLVPESLIEILTWEEKPKC 297 (429)
Q Consensus 222 L~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~-~-~~~~~a~~~L~~La~~-~e~~~~i~-~~~~i~~~Lv~~L~~~~s~~~ 297 (429)
|..++....+. + -...++.++..|.+. + ..+..++.++..++.. +. .+. -...+.+.+++.+. +.++..
T Consensus 199 l~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~-d~~~~v 271 (1230)
T 1u6g_C 199 LGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCN-VDDDEL 271 (1230)
T ss_dssp HHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHS-SCCTTT
T ss_pred HHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhc-CCCHHH
Confidence 99998754332 1 234688888877643 2 5566677777777652 21 121 12345567888887 677888
Q ss_pred HHHHHHHHHHHhhC
Q 014196 298 QELSAYILMILAHQ 311 (429)
Q Consensus 298 ~e~A~~~L~~L~~~ 311 (429)
++.+..++..++..
T Consensus 272 R~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 272 REYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888764
|
| >1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 | Back alignment and structure |
|---|
Probab=97.91 E-value=4e-06 Score=63.08 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=44.3
Q ss_pred CCCcchhhhhhhhHH--HHHHHHhccc---cccCCCCCCCcccchhhHHHHHHHHHhhc
Q 014196 2 SIPSSSYMRLQFFSR--IRQFIQSKSA---RRRQNEPNHNHEKSRTLKNINCQEEKQVI 55 (429)
Q Consensus 2 ~~~~~~~~~~~TydR--Ie~W~~~g~~---~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~ 55 (429)
..|+.. -=|+||.| |++|++.|+. .+++++....++||+.|+++|+.|..++.
T Consensus 19 ~~Pv~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 19 KDPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp SSEEEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred cCCEEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcC
Confidence 345543 35899999 9999987543 89999988899999999999999999883
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.83 E-value=4.4e-06 Score=78.76 Aligned_cols=53 Identities=13% Similarity=0.054 Sum_probs=45.7
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhc-c-c-cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSK-S-A-RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g-~-~-~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|..|++.- -|+||+| |++|+..+ . + +|++++....|+||++||++|+.|+..+
T Consensus 218 ~~dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 218 MREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISEN 275 (281)
T ss_dssp CSSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTC
T ss_pred hcCCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHC
Confidence 45677655 4899999 99999875 3 3 9999999889999999999999999887
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0024 Score=67.00 Aligned_cols=249 Identities=12% Similarity=0.088 Sum_probs=163.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS-TEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
..+..|...|.+.+++.|.-|+..|..++...+. ...+. ...+.++.+|. ++|..++..++..|..++.. .|-.
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~ 403 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HEAVK--THIETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQ 403 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HHHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHH
Confidence 3466777777777889999999999999876542 12332 34778889999 89999999999999999854 4766
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-CC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA-VL 229 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~ 229 (429)
.|++ .|...+...+.+.+..++..+..++..-.. ...-.+..|++++..+.. .+...++..+.++.. .+
T Consensus 404 ~Iv~-----eL~~yl~~~d~~~~~~~v~~I~~la~k~~~----~~~~~v~~Ll~ll~~~~~-~v~~ev~~~l~~ii~~~~ 473 (621)
T 2vgl_A 404 QIVA-----EMLSYLETADYSIREEIVLKVAILAEKYAV----DYTWYVDTILNLIRIAGD-YVSEEVWYRVIQIVINRD 473 (621)
T ss_dssp HHHH-----HHHHHHHHCCHHHHHHHHHHHHHHHHHHCS----STHHHHHHHHHHHHHHGG-GSCSHHHHHHHHHHGGGC
T ss_pred HHHH-----HHHHHHHhcCHHHHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHhCCh
Confidence 6654 356666667888888888888888742111 012357889998886433 234446666666654 34
Q ss_pred CChhHHHhcCcHHHHHHhccCCc---chHHHHHHHHHHhhCChhcHHHHhcCCCC-h----HHHHHhcccCCChhHHHHH
Q 014196 230 DNARPMVSNGVVHTLLKLCSMKE---RLSEKSLATLGNLVVTSTGKKAMEDSPLV-P----ESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL~~~~---~~~~~a~~~L~~La~~~e~~~~i~~~~~i-~----~~Lv~~L~~~~s~~~~e~A 301 (429)
+-+.. ++..|++.+.++. .+...++.+|++-+. .+.+.+++ | ..+.+-+. ..++.++...
T Consensus 474 ~~~~~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy~~------~~~~~~~~~p~~~l~~l~~~~~-~~~~~v~~~~ 541 (621)
T 2vgl_A 474 DVQGY-----AAKTVFEALQAPACHENLVKVGGYILGEFGN------LIAGDPRSSPLIQFNLLHSKFH-LCSVPTRALL 541 (621)
T ss_dssp SCHHH-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTH------HHHSSTTSCHHHHHHHHHHHHT-TSCHHHHHHH
T ss_pred hHHHH-----HHHHHHHHHcCccchHHHHHHHHHHhcchHH------HhcccCCCCHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 43333 3567788887763 556667788877543 22222222 1 12333333 4677888888
Q ss_pred HHHHHHHhhCCHHHHHHHHhCCchHHHHH-Hhh--cCCHHHHHHHHHHHHHHHhc
Q 014196 302 AYILMILAHQSSEQRDKMAKSGIVHVSLQ-LAL--LGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 302 ~~~L~~L~~~~~~~~~~i~~~G~v~~L~~-ll~--~~~~~~k~~A~~lL~~l~~~ 353 (429)
+.++..+....++..+. +..++. ... +.++++|++|...++.++..
T Consensus 542 Lta~~Kl~~~~p~~~~~------i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 542 LSTYIKFVNLFPEVKAT------IQDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp HHHHHHHHHHCGGGHHH------HHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHChHHHHH------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 88888887655543332 222332 233 56889999999999999854
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00096 Score=61.70 Aligned_cols=185 Identities=13% Similarity=0.091 Sum_probs=123.6
Q ss_pred hhhccCCCHHHHHHHHHHHHH-hhccCCCcccc---cc-CCcHHHHHHhh-hcCCcHHHHHHHHHHHHHhccCCC--Chh
Q 014196 162 PKNVDAVDESTRHEFGELLLS-LSSLANTHIPL---SS-SEILPFLVGIL-ESGSSVETKELCIGALYNLSAVLD--NAR 233 (429)
Q Consensus 162 v~lL~~~~~~~~~~aa~~L~~-Ls~~~~~~~~i---~~-~g~i~~Lv~lL-~~~~~~~~~~~A~~aL~nLs~~~~--n~~ 233 (429)
...+++.+...|..+...|.. +... +...+ .+ ...+..|.+.+ .+.+. .++..|+.+|..|+..-. ...
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~--~~~i~~~~~~~~~~~~~L~~~l~~D~n~-~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQ--TKKLKSTSQNYSNLLGIYGHIIQKDANI-QAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGG--CCCBCCTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhc--CCccccCcccHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHhccccccc
Confidence 445677778888888888888 7632 11111 12 24577888888 45555 788899999999996322 222
Q ss_pred -HHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhc-CCCChHHHHHhcccCCChhHHHHHHHHHHHHhh
Q 014196 234 -PMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMED-SPLVPESLIEILTWEEKPKCQELSAYILMILAH 310 (429)
Q Consensus 234 -~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~-~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~ 310 (429)
... .-++|.+++.+++.. .+++.+..+|..++.+-+- ..... -..+.+.|...|. +.++..++.++.+|..++.
T Consensus 99 ~~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~-~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 99 KDYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMK-HKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHH
Confidence 111 237899999999875 7778888888877762110 00000 1123346777887 7789999999999998775
Q ss_pred CCH---HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 311 QSS---EQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 311 ~~~---~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
..+ ..-...+...++|.|..++.+..+.+|..|...|..+..
T Consensus 176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 332 221122325689999999999999999999998777665
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0045 Score=67.14 Aligned_cols=223 Identities=13% Similarity=0.031 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhc
Q 014196 86 WEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNV 165 (429)
Q Consensus 86 ~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL 165 (429)
+..+..|+..|....-.+. +. .+++.|..+|.+++..+++.|+.+|+-+-.+. .|...+ ..|+..+
T Consensus 451 ~~ir~gAaLGLGla~~GS~--~e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~ai------~~LL~~~ 516 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSA--NI-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPEAI------HDMFTYS 516 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCC--CH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC--CH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHHHH------HHHHHHH
Confidence 4455666666665432221 11 23677888998888777888888888776665 344333 2334433
Q ss_pred -cCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHH
Q 014196 166 -DAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTL 244 (429)
Q Consensus 166 -~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~L 244 (429)
...+...++.++..|..+.. ++...++.+++.|.....+-++..++.++.--.....|.. +|+.|
T Consensus 517 ~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~------aIq~L 582 (963)
T 4ady_A 517 QETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS------AVKRL 582 (963)
T ss_dssp HHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH------HHHHH
T ss_pred hccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH------HHHHH
Confidence 34456677777777776652 2234578999998865444567766666665455555543 46667
Q ss_pred HHhcc-CCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhC
Q 014196 245 LKLCS-MKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKS 322 (429)
Q Consensus 245 v~lL~-~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~ 322 (429)
+..+. +.+ .+++.|+..|+.+....+ ..+ +.+++.|..+.++.+|..|+.+|+.+|.+++. .
T Consensus 583 L~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v-~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~----- 646 (963)
T 4ady_A 583 LHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTV-PRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q----- 646 (963)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSH-HHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H-----
T ss_pred HHHhccCCcHHHHHHHHHHHHhhccCCH--------HHH-HHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H-----
Confidence 77654 433 777888888887654321 233 36777665468899999999999999986542 1
Q ss_pred CchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 323 GIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 323 G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.++..|..++.+.++.+++.|...|..+.-
T Consensus 647 ~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 647 SAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 145677777888889999999998888874
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00064 Score=74.32 Aligned_cols=301 Identities=12% Similarity=0.122 Sum_probs=183.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc--h-
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT--N- 148 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~--n- 148 (429)
..+..+++.+...+...+..|+..+..+...+... .....|+++.|...+...... |.|+.++..|+..... .
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 34566777777655556677888888776533211 112236677888888764333 9999999999865421 1
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
-..++ +.+|.+..........+|..|..++..+...- ...+-...+|.|+..|.+....+.|..|+.++..|+..
T Consensus 90 e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 90 EPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAV---NPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS---CGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 12222 45666655555555666666555555554221 11112456899999998775568999999999999975
Q ss_pred CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHH
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMI 307 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~ 307 (429)
....-...=-+.||.+-+.+-|.. ++...|..++..+|..-+++.- . + .+|.||+.+. +. .....++..|..
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-~--~-~~~~~~~~~~-~p--~~~~~~~~~l~~ 237 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-E--R-FIPSLIQCIA-DP--TEVPETVHLLGA 237 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-G--G-GHHHHHHHHH-CT--THHHHHHHHHTT
T ss_pred hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-h--h-hHHHHHHHhc-Ch--hhhHHHHHHhhc
Confidence 422211122378888888888764 8889999999988874333321 1 2 2458999987 33 223344444442
Q ss_pred Hh---hCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc-cCCCCCCCCCcc-ccc--cCCCCChhhh
Q 014196 308 LA---HQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQ-AKMGPHSGPQTR-RVS--IGSPVSPREA 380 (429)
Q Consensus 308 L~---~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~-~~~~~~~~~~~~-~~~--~~~~~~~~~~ 380 (429)
-. .-+.-.-. + .+|.|..-|...+...+++++-+..+|.+--+ .+....=.|.+. ++. .......+.+
T Consensus 238 ~tfv~~v~~~~l~-~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r 312 (986)
T 2iw3_A 238 TTFVAEVTPATLS-I----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAR 312 (986)
T ss_dssp CCCCSCCCHHHHH-H----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHH
T ss_pred CeeEeeecchhHH-H----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHH
Confidence 11 11111111 2 36888888888888899999999999986321 000000012222 221 3344478899
Q ss_pred HHHHHHHHHHHHH
Q 014196 381 QEGKKMMKNLVQQ 393 (429)
Q Consensus 381 ~~~k~~l~~~~~~ 393 (429)
+.+++|++.+.+.
T Consensus 313 ~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 313 EVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0005 Score=65.59 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=118.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
.....++..|.+++...++.+++.|+.+-.++......+++.||+..|+.+....+...+.+++.||.+|-.+. .....
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~g 196 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLG 196 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccc
Confidence 45778889999888999999999999955567788999999999999999999999999999999999999885 46666
Q ss_pred HHh-cCccchhhhhccCCCHHHHHHHHHHHHHhhccCC-Ccccccc----------CCcHHHHHHhhh---cCCcHHHHH
Q 014196 152 MVE-AGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN-THIPLSS----------SEILPFLVGILE---SGSSVETKE 216 (429)
Q Consensus 152 iv~-~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~----------~g~i~~Lv~lL~---~~~~~~~~~ 216 (429)
|++ ...|..+..++.+....+.+.|..+|..+....+ +...+.. .-.+..|+.+|. +++. +++.
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~-elq~ 275 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP-ELLV 275 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH-HHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH-HHHH
Confidence 764 4578888888887667777888888888876654 3322221 123678999997 5565 7888
Q ss_pred HHHHHHHHh
Q 014196 217 LCIGALYNL 225 (429)
Q Consensus 217 ~A~~aL~nL 225 (429)
+|...+-.+
T Consensus 276 ~amtLIN~l 284 (339)
T 3dad_A 276 YTVTLINKT 284 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776655443
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.028 Score=48.85 Aligned_cols=214 Identities=20% Similarity=0.184 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCCch
Q 014196 70 DCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS-TEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
+...+..++..|...-+.+|++|+..+..+++.-++...-+ +..|+.|++ +.....-..-+.+++.++.-.+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 45678899999999889999999999999998877765544 445677765 4455554555788888886542
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
.+++ +.+|.+..-..-+++..+.+.+-+|..++... +.+ -.+.+.-+..++.+.+. . +=+.+|.-++.-
T Consensus 103 --e~v~-~vVp~lfanyrigd~kikIn~~yaLeeIaran---P~l-~~~v~rdi~smltskd~-~---Dkl~aLnFi~al 171 (253)
T 2db0_A 103 --ELVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKAN---PML-MASIVRDFMSMLSSKNR-E---DKLTALNFIEAM 171 (253)
T ss_dssp --HHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC---HHH-HHHHHHHHHHHTSCSSH-H---HHHHHHHHHHTC
T ss_pred --HHHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhC---hHH-HHHHHHHHHHHhcCCCh-H---HHHHHHHHHHHH
Confidence 2222 45566666666778899999999999888432 111 12345667778887664 2 334566666666
Q ss_pred CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHH
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~ 306 (429)
.+|..+-+ .-.+|.|..+|.|.+ -++..++.+|.+++. +|..|..|.. -++-+. +.|...+......|.
T Consensus 172 Gen~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~-------kl~e~~-D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 172 GENSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK-------RLEELN-DTSSLVNKTVKEGIS 242 (253)
T ss_dssp CTTTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH-------HHHHCC-CSCHHHHHHHHHHHH
T ss_pred hccCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH-------HHHHhc-CcHHHHHHHHHHHHH
Confidence 67775544 456899999999887 567788999999998 6766665543 344455 567777777666776
Q ss_pred HHhh
Q 014196 307 ILAH 310 (429)
Q Consensus 307 ~L~~ 310 (429)
.+..
T Consensus 243 rl~l 246 (253)
T 2db0_A 243 RLLL 246 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00081 Score=67.26 Aligned_cols=231 Identities=13% Similarity=0.078 Sum_probs=145.8
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHhccCCCchHHHHHhcC--ccchhhhhccC---------------C--CHHHHHHHHH
Q 014196 119 LVSMVST-EVIGRRRAAIKALIQLANGTYTNKAIMVEAG--ILTKLPKNVDA---------------V--DESTRHEFGE 178 (429)
Q Consensus 119 Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G--~i~~Lv~lL~~---------------~--~~~~~~~aa~ 178 (429)
++..|.. .+...+.-++.+|..|...+ +.|..+++.+ .+|+++.++.. . ....+.++.-
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 4455554 24555677888888888886 5888888654 36666554431 1 1345677888
Q ss_pred HHHHhhccCCCccccccCCcH--HHHHHhhhcCCcHHHHHHHHHHHHHhccCCC-C----hh-HHHhcCcHHHHHHhccC
Q 014196 179 LLLSLSSLANTHIPLSSSEIL--PFLVGILESGSSVETKELCIGALYNLSAVLD-N----AR-PMVSNGVVHTLLKLCSM 250 (429)
Q Consensus 179 ~L~~Ls~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n----~~-~iv~~G~v~~Lv~lL~~ 250 (429)
++|-||..++....+...+.. +.|+.+++....+++.+-++.+|.||..... + .. .++..++ ++++..|..
T Consensus 251 ~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~ 329 (480)
T 1ho8_A 251 LIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSE 329 (480)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHS
T ss_pred HHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhh
Confidence 999999887655555555543 6788888887666888999999999987541 2 22 2333444 567776653
Q ss_pred C---c-chHHHH---HHHHH----HhhCChhcHHHHhc-------------------------CCCChHHHHHhcccC--
Q 014196 251 K---E-RLSEKS---LATLG----NLVVTSTGKKAMED-------------------------SPLVPESLIEILTWE-- 292 (429)
Q Consensus 251 ~---~-~~~~~a---~~~L~----~La~~~e~~~~i~~-------------------------~~~i~~~Lv~~L~~~-- 292 (429)
. | ++.+.. ...|. .++..++...++.. ...++..|+++|...
T Consensus 330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~ 409 (480)
T 1ho8_A 330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 409 (480)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence 2 2 333322 12221 11212232222221 123445778888621
Q ss_pred -------CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 293 -------EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 293 -------~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
.++....-|+.=++.++.+-|+.+..+-+.|+=..+.+++.+.++.+|..|...++-+-
T Consensus 410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 13444555666677777766788888888899899999999999999999998776553
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0013 Score=62.79 Aligned_cols=150 Identities=12% Similarity=0.072 Sum_probs=116.6
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHH-hccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhc
Q 014196 200 PFLVGILESGSSVETKELCIGALYN-LSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMED 277 (429)
Q Consensus 200 ~~Lv~lL~~~~~~~~~~~A~~aL~n-Ls~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~ 277 (429)
..+++-|.+++. +.++.++--|.. ++.+......++..|++..|+....+.+ .++..++.+|.+|-.+.+|-..+++
T Consensus 121 ~~iiekL~~~~~-~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 121 NAILEKLYSSSG-PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHCCH-HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHhcCCc-HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 345566666665 456668777877 6667777899999999999999998765 8999999999999999999999988
Q ss_pred CCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhC--------C--chHHHHHHhh---cCCHHHHHHHH
Q 014196 278 SPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKS--------G--IVHVSLQLAL---LGSPLAQRRAS 344 (429)
Q Consensus 278 ~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~--------G--~v~~L~~ll~---~~~~~~k~~A~ 344 (429)
+...+..|+.++. +....+...|..+|..++..++.....+.++ | -.+.|+.+++ .++...+.+|.
T Consensus 200 ~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 7767778888887 6677888999999999998765444444332 1 3678888997 56888899988
Q ss_pred HHHHHHH
Q 014196 345 KLLQWFK 351 (429)
Q Consensus 345 ~lL~~l~ 351 (429)
.++.-+-
T Consensus 279 tLIN~lL 285 (339)
T 3dad_A 279 TLINKTL 285 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.004 Score=60.47 Aligned_cols=265 Identities=10% Similarity=0.014 Sum_probs=139.2
Q ss_pred ccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHH
Q 014196 38 EKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQ 117 (429)
Q Consensus 38 ~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~ 117 (429)
.+|+.+|++..-...... .. + ++ .--.+..+.+.++++|+.++-.|++.|.++... +.-+. ..+
T Consensus 79 s~d~~lKrLvYLyl~~~~-----~~--~-~e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-----l~~ 142 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMS-----CI--A-ED-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-----IER 142 (355)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TT--S-SC-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH-----HHH
T ss_pred CCCHHHHHHHHHHHHHhC-----CC--H-HH-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH-----HHH
Confidence 489999999998776551 11 1 11 234578888999999999998899988888643 33233 366
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCC
Q 014196 118 MLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSE 197 (429)
Q Consensus 118 ~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g 197 (429)
.+.++|.+.++-++..|+.+...|....+ + +++ +.++.+-.++.+.+.-+..+|..+|..+...+. .
T Consensus 143 ~lk~~L~d~~pyVRk~A~l~~~kL~~~~p---e-~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~ 209 (355)
T 3tjz_B 143 YMKQAIVDKVPSVSSSALVSSLHLLKCSF---D-VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------L 209 (355)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTTTCH---H-HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------H
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhccCH---H-HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------H
Confidence 78889999999999999999998876642 3 333 678888888888777788888888999885431 1
Q ss_pred cHHHHHHhhhcCC--cHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHH
Q 014196 198 ILPFLVGILESGS--SVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKA 274 (429)
Q Consensus 198 ~i~~Lv~lL~~~~--~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~ 274 (429)
++..|+.-+..+. .+-.+..-++.+..++..++. -.....++.+..+|+..+ .++-.|+.++..+...+. .
T Consensus 210 a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~---~ 283 (355)
T 3tjz_B 210 AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA---K 283 (355)
T ss_dssp HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH---H
Confidence 4566666665532 112333333433333332200 011344556666676654 777788888877654221 1
Q ss_pred HhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHH
Q 014196 275 MEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASK 345 (429)
Q Consensus 275 i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~ 345 (429)
+.. .++. .|..++. +.++..|-.|+..|..+....|+..+. .-.-+.+++.+++..+...|..
T Consensus 284 ~~~-~a~~-~L~~fLs-s~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 284 ELA-PAVS-VLQLFCS-SPKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp -----CCC-THHHHHH-SSSSSSHHHHHHCC----------------------------------------
T ss_pred HHH-HHHH-HHHHHHc-CCCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHH
Confidence 222 2333 5666776 677788888887777777654433221 2244555666665555555553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0098 Score=64.52 Aligned_cols=234 Identities=9% Similarity=-0.078 Sum_probs=149.1
Q ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCC--------HHHHHHHHHHHHHhc
Q 014196 74 LQKSVKRLH---FGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEV--------IGRRRAAIKALIQLA 142 (429)
Q Consensus 74 l~~lv~~L~---~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~--------~~~~~~A~~aL~nLa 142 (429)
+..+-..|. ++++..+..|+..|..+..... .. ++..|...|.+++ +.++..|+..|+-..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~ 465 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA 465 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence 455555565 5578888889999998765332 11 4677888887655 668888888998877
Q ss_pred cCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHH
Q 014196 143 NGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGAL 222 (429)
Q Consensus 143 ~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 222 (429)
.+. .+..+ ++.|..+|...+...++.++.+|.-+-.-..+ ..++..|++.+.+.....+++.++.+|
T Consensus 466 ~GS--~~eev-----~e~L~~~L~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 466 MGS--ANIEV-----YEALKEVLYNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp TTC--CCHHH-----HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCC--CCHHH-----HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 665 22333 33466777655555555555555544221111 235677888766554447888888888
Q ss_pred HHhccCCCChhHHHhcCcHHHHHHhccC-CcchHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCChhHHHH
Q 014196 223 YNLSAVLDNARPMVSNGVVHTLLKLCSM-KERLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEKPKCQEL 300 (429)
Q Consensus 223 ~nLs~~~~n~~~iv~~G~v~~Lv~lL~~-~~~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~ 300 (429)
..+.... ...++.+++.|.. .+.+.+.+......++.. ..+..+| ..|++.+..+.+..++..
T Consensus 533 Gll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aI-------q~LL~~~~~d~~d~VRra 597 (963)
T 4ady_A 533 ALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV-------KRLLHVAVSDSNDDVRRA 597 (963)
T ss_dssp HHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHH-------HHHHHHHHHCSCHHHHHH
T ss_pred HhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHH-------HHHHHHhccCCcHHHHHH
Confidence 8776543 2457778887764 346666655444444442 2222222 135555443567788999
Q ss_pred HHHHHHHHhhCCHHHHHHHHhCCchHHHHHHh-hcCCHHHHHHHHHHHHHHHh
Q 014196 301 SAYILMILAHQSSEQRDKMAKSGIVHVSLQLA-LLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 301 A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll-~~~~~~~k~~A~~lL~~l~~ 352 (429)
|+.+|..++.+++ ..++.++.++ +++++.+|..|++.|..+.-
T Consensus 598 AViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 598 AVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp HHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999998876653 2466777644 45799999999999998863
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0051 Score=67.26 Aligned_cols=264 Identities=12% Similarity=0.125 Sum_probs=173.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchH---HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVK---IKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~---~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
..+..+.+.+...... ..|+..+..++.+... .--.++ +.+|.++..+.+.+..++++|..++..+...-..+
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 4455666666543222 7788889999865421 222333 56888888888888899999888877776543222
Q ss_pred HHHHHhcCccchhhhhccCC-CHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHh
Q 014196 149 KAIMVEAGILTKLPKNVDAV-DESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGALYNL 225 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nL 225 (429)
. + ...+|.|+..|.+. +...+..|..++..|+... ...++ -...||.+...+.+-.+ +++..|..++..+
T Consensus 130 a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~-~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 A--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKK-EVKAAATAAMTKA 202 (986)
T ss_dssp G--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSH-HHHHHHHHHHHHH
T ss_pred H--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcH-HHHHHHHHHHHHH
Confidence 2 2 35678888888654 4677777888888888543 23343 24567777777666665 7999999999999
Q ss_pred ccCCCChhHHHhcCcHHHHHHhccCCcchHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHH
Q 014196 226 SAVLDNARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYIL 305 (429)
Q Consensus 226 s~~~~n~~~iv~~G~v~~Lv~lL~~~~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L 305 (429)
|..-.|+.. ...+|.|++.+.++++ +.+|+..|..-.--.+.-.-... -+.|.|.+-|. ..+...+..++-+.
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~~p~~-~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~-~~~~~~~r~~~~~~ 275 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLN-ERETGIKRKSAVII 275 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHHCTTH-HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHT-SSSHHHHHHHHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhcChhh-hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhc-cCcchhheeeEEEE
Confidence 987777632 3468999999998844 45555444332221111111110 11246666666 56777788899999
Q ss_pred HHHhh--CCHHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhcc
Q 014196 306 MILAH--QSSEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 306 ~~L~~--~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~~~~ 354 (429)
-|||. .++......+ ...+|.|-..... ..|++++.|...+..|.+..
T Consensus 276 ~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 276 DNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp HHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhh
Confidence 99998 5665555444 3467777776665 57999999988888777643
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.013 Score=52.92 Aligned_cols=218 Identities=15% Similarity=0.114 Sum_probs=147.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCC-chHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCc-cc
Q 014196 115 VIQMLVSMVSTEVIGRRRAAIKALIQLANGTY-TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTH-IP 192 (429)
Q Consensus 115 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~-~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~-~~ 192 (429)
.+..|..+|.+.|+.++.+++.+|..+-..-+ .-+..+++ ..+|.++.++.+.+..+.-.|..+|..|-...+.. ..
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 57789999999999999999999999877632 23444444 46788899998888777778888888876443211 11
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCCh--
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTS-- 269 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~-- 269 (429)
+ .-.+..|..++.+++. -....|+..|..|......+ +++..+..++.+.+ .++..++.+|-+++...
T Consensus 113 y--~Kl~~aL~dlik~~~~-il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D 183 (265)
T 3b2a_A 113 F--LKAAKTLVSLLESPDD-MMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD 183 (265)
T ss_dssp H--HHHHHHHHHHTTSCCH-HHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS
T ss_pred H--HHHHHHHHHHhcCCCc-hHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC
Confidence 1 1246788888888887 68889999999883322221 34667888886555 88888999999998733
Q ss_pred -hcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCC--HHHHHHHHhCCchHHHHHHh-hcCCHHHHHHHHH
Q 014196 270 -TGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS--SEQRDKMAKSGIVHVSLQLA-LLGSPLAQRRASK 345 (429)
Q Consensus 270 -e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~--~~~~~~i~~~G~v~~L~~ll-~~~~~~~k~~A~~ 345 (429)
+.-..|.+ -+-++|. +.++..++.|..+|..+.+.. ++....+. ++....-.+. ..|.|..+.+|..
T Consensus 184 ~~i~~~I~~------eI~elL~-~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~--~~~~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 184 SGHLTLILD------EIPSLLQ-NDNEFIVELALDVLEKALSFPLLENVKIELL--KISRIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp CCCGGGTTT------THHHHHT-CSCHHHHHHHHHHHHHHTTSCCCSCCHHHHH--HHHHHHHHGGGCSSCHHHHHHHHH
T ss_pred HHHHHHHHH------HHHHHHc-CCCHHHHHHHHHHHHHHHcCcccHhHHHHHH--HHHHHHHHHHHhcCChhHHHHHHH
Confidence 33333333 3556777 679999999999999998752 11222221 1222222233 4588888888887
Q ss_pred HHHHHH
Q 014196 346 LLQWFK 351 (429)
Q Consensus 346 lL~~l~ 351 (429)
+-..+-
T Consensus 255 v~~~le 260 (265)
T 3b2a_A 255 VSDLID 260 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.052 Score=47.21 Aligned_cols=213 Identities=16% Similarity=0.188 Sum_probs=142.5
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCC-CHHHHHHHHHHHHHhhccCCCcc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAV-DESTRHEFGELLLSLSSLANTHI 191 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~-~~~~~~~aa~~L~~Ls~~~~~~~ 191 (429)
..++..++.+|.++--.+|.+|+..+.+++..-++....++ ..|.-+++.. .....++.+.++..++ ..++
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la---~i~P 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMA---KEKP 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHH---HHCH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHH---HhCH
Confidence 34678899999988788999999999999877544444333 3345555433 3555567788888888 4444
Q ss_pred ccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChh
Q 014196 192 PLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTST 270 (429)
Q Consensus 192 ~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e 270 (429)
.+. .+.+|.|..-..-|++ ++|-+-..+|-.++.... ..-.+++.-+..++.+++ .-+-.|+..+..+. +
T Consensus 103 e~v-~~vVp~lfanyrigd~-kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alG---e 173 (253)
T 2db0_A 103 ELV-KSMIPVLFANYRIGDE-KTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMG---E 173 (253)
T ss_dssp HHH-HHHHHHHHHHSCCCSH-HHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCC---T
T ss_pred HHH-HhhHHHHHHHHhcCCc-cceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh---c
Confidence 442 2346666666667877 899988889988886322 122456777888888765 22333444444432 2
Q ss_pred cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 014196 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWF 350 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l 350 (429)
+.-..+. +-.| .|..+|. +++.-++..|+.+|.+++..++..|..+.. -++=+.+.++.++++...-|..+
T Consensus 174 n~~~yv~-PfLp-rL~aLL~-D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 174 NSFKYVN-PFLP-RIINLLH-DGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp TTHHHHG-GGHH-HHHGGGG-CSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHH
T ss_pred cCccccC-cchH-HHHHHHc-CcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHH
Confidence 2223332 3454 8999998 789999999999999999988888875543 34445566788887777655444
Q ss_pred H
Q 014196 351 K 351 (429)
Q Consensus 351 ~ 351 (429)
-
T Consensus 245 ~ 245 (253)
T 2db0_A 245 L 245 (253)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0043 Score=62.01 Aligned_cols=227 Identities=13% Similarity=0.095 Sum_probs=141.1
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcC--cHHHHHHhhcC---------------C--CHHHHHHHHH
Q 014196 77 SVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELG--VIQMLVSMVST---------------E--VIGRRRAAIK 136 (429)
Q Consensus 77 lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G--~i~~Lv~lL~s---------------~--~~~~~~~A~~ 136 (429)
++..|... +.+.+--++..|..+.+. ++.|..+.+.+ .+|+++.++.. . ...++-+++.
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll 250 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLL 250 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHH
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHH
Confidence 44455542 344455678888888764 57899888653 47777655441 1 2456788999
Q ss_pred HHHHhccCCCchHHHHHhcCcc--chhhhhccC-CCHHHHHHHHHHHHHhhccCC-Ccc-----ccccCCcHHHHHHhhh
Q 014196 137 ALIQLANGTYTNKAIMVEAGIL--TKLPKNVDA-VDESTRHEFGELLLSLSSLAN-THI-----PLSSSEILPFLVGILE 207 (429)
Q Consensus 137 aL~nLa~~~~~nk~~iv~~G~i--~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~-~~~-----~i~~~g~i~~Lv~lL~ 207 (429)
+++-|++.. +....+.+.+.. +.|+.+++. ....+.+-+.++|.||..... ... .+...++ +.+++.|.
T Consensus 251 ~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 251 LIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 999999986 355566666543 455666653 446677788889999986541 111 1212333 55666665
Q ss_pred cC---CcHHHHHHHH-------HHHHHhc---------------cCC---------CChhHHHhc--CcHHHHHHhccC-
Q 014196 208 SG---SSVETKELCI-------GALYNLS---------------AVL---------DNARPMVSN--GVVHTLLKLCSM- 250 (429)
Q Consensus 208 ~~---~~~~~~~~A~-------~aL~nLs---------------~~~---------~n~~~iv~~--G~v~~Lv~lL~~- 250 (429)
.. |. ++.++-- .....++ -.+ +|..++-+. ..+..|+++|..
T Consensus 329 ~rk~~De-dl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 329 ERKYSDE-ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp SSCCSSH-HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hCCCCcH-HHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 42 32 3332111 1111122 111 344455443 567788999973
Q ss_pred --------C-c-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 251 --------K-E-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 251 --------~-~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
. + .+..-|+.=++.++. .|+||..+.+.|+= ..++++|. +.++.++.+|..++-.+-
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K-~~VM~Lm~-h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGK-ADIMELLN-HSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHH-HHHHHHTS-CSSHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcH-HHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 1 2 455566667778887 79999988887764 58999998 899999999988877654
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.041 Score=53.37 Aligned_cols=246 Identities=11% Similarity=-0.009 Sum_probs=148.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAI 151 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~ 151 (429)
......++.+++.|...|+-.-..+..+++..++. + =++..|..=+.++++-++-.|+.+|+++...+ --+.
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~--m~~~ 139 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDST--MLQA 139 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT--THHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH--HHHH
Confidence 34456677888888888888888888888763331 1 13667788888999999999999999997663 3333
Q ss_pred HHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCC
Q 014196 152 MVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDN 231 (429)
Q Consensus 152 iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n 231 (429)
+ .+.+...|.+.++-+|..|+.+...|... .+.+.. +++..+-+++.+.++ .+..+|+.+|+.++.++.
T Consensus 140 l-----~~~lk~~L~d~~pyVRk~A~l~~~kL~~~---~pe~v~-~~~~~l~~ll~d~n~-~V~~~Al~lL~ei~~~d~- 208 (355)
T 3tjz_B 140 I-----ERYMKQAIVDKVPSVSSSALVSSLHLLKC---SFDVVK-RWVNEAQEAASSDNI-MVQYHALGLLYHVRKNDR- 208 (355)
T ss_dssp H-----HHHHHHHHTCSSHHHHHHHHHHHHHHTTT---CHHHHH-TTHHHHHHHTTCSSH-HHHHHHHHHHHHHHTTCH-
T ss_pred H-----HHHHHHHcCCCCHHHHHHHHHHHHHHhcc---CHHHHH-HHHHHHHHHhcCCCc-cHHHHHHHHHHHHHhhch-
Confidence 3 34467788888899999988887777632 233333 688999999988886 678899999999987541
Q ss_pred hhHHHhcCcHHHHHHhccCCcchHHHH-HHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 232 ARPMVSNGVVHTLLKLCSMKERLSEKS-LATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 232 ~~~iv~~G~v~~Lv~lL~~~~~~~~~a-~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
.++..|+.-+.+..-.-+.+ +.+|..+.. .++.- -.....+.+.|...|+ +.++.+.-.|+.++..+.
T Consensus 209 -------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~--~~~~~~~~~~l~~~L~-~~~~aVvyEa~k~I~~l~ 278 (355)
T 3tjz_B 209 -------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED--GSRDSPLFDFIESCLR-NKHEMVVYEAASAIVNLP 278 (355)
T ss_dssp -------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------CCCC-CSSHHHHHHHHHHHTC--
T ss_pred -------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHHc-CCChHHHHHHHHHHHhcc
Confidence 13445555554421001112 223333333 12110 0011233345666777 788888888888887765
Q ss_pred hCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 310 HQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 310 ~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
..+.. .. ..++..|..++.+.++.+|-.|...|..+.
T Consensus 279 ~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 279 GCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp --------------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred CCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 42211 22 234677778888888888888887555554
|
| >3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00054 Score=62.98 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=43.5
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhc-cc---ccc--CCCCCCCcccchhhHHHHHHHHHh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSK-SA---RRR--QNEPNHNHEKSRTLKNINCQEEKQ 53 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g-~~---~T~--~~L~~~~L~PN~~Lr~lI~~W~~~ 53 (429)
|..|+++--=|+||+| |++|+..+ .. +|| +++...+|+||+.|+++|+.|..+
T Consensus 191 f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 191 YEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp CSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred ccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 5678886455899999 99999764 22 855 888888999999999999999874
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.029 Score=52.25 Aligned_cols=184 Identities=15% Similarity=0.216 Sum_probs=115.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhchHH--HH-HHHhcC-cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCC----ch
Q 014196 77 SVKRLHFGSWEEKEMAAKEIEKLAKEDVKI--KK-LMAELG-VIQMLVSMVSTEVIGRRRAAIKALIQLANGTY----TN 148 (429)
Q Consensus 77 lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~--r~-~i~~~G-~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~----~n 148 (429)
+-.+|.+.++..|.+|+..|..+....+.. .. .+...+ .++.+-.++.+.+..+++.++.+|..++.... .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 557899999999999999999876543221 11 111223 34556678888899999999999988764321 11
Q ss_pred H-HHHHhcCccchhhh-hccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 149 K-AIMVEAGILTKLPK-NVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 149 k-~~iv~~G~i~~Lv~-lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
. ....-...+|.|+. ++.+....++..+..++..+......... .++.+...+.+.++ .++..++..|.++-
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knp-kv~~~~l~~l~~~l 167 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLP-KLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCH-HHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCH-HHHHHHHHHHHHHH
Confidence 1 11122345665654 46677777888777777766533322121 35666777777777 78888888888765
Q ss_pred cC--CCC--hhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC
Q 014196 227 AV--LDN--ARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV 267 (429)
Q Consensus 227 ~~--~~n--~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~ 267 (429)
.. ... ....+ ..+++.+..+|.+.+ .+++.|..++..+-.
T Consensus 168 ~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 168 AAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 32 111 11111 134456667778876 888888888877655
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.06 Score=54.69 Aligned_cols=240 Identities=15% Similarity=0.082 Sum_probs=146.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhc--CcHHHHHHh--hcCC-----C---HHHHHHHHHHHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAEL--GVIQMLVSM--VSTE-----V---IGRRRAAIKALIQ 140 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~--G~i~~Lv~l--L~s~-----~---~~~~~~A~~aL~n 140 (429)
....|+..|-++.++.|..|+..||.+.+............ ...-.|+.+ |+.. | .-|||.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 56788888889999999999999999876543110000111 212222222 2221 2 4689999999999
Q ss_pred hccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHH
Q 014196 141 LANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS-SSEILPFLVGILESGSSVETKELCI 219 (429)
Q Consensus 141 La~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~ 219 (429)
+ .+-+.. ..++..|+..+.....+++......|..+ +..+. -.+.++.++.-|.+.+. +++..|+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DD-DVRAVAA 320 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDE-DIKLLSA 320 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSH-HHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCccc-HHHHHHH
Confidence 9 665322 33444444445666688888777777777 12221 24567777777777776 7999999
Q ss_pred HHHHHhccCCCChhHHHhcCcHHHHHHhccCC---cchHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChh
Q 014196 220 GALYNLSAVLDNARPMVSNGVVHTLLKLCSMK---ERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPK 296 (429)
Q Consensus 220 ~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~---~~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~ 296 (429)
.+|.-++ .++... .++..+-++|.+- +......+..|..|+..+.. .......+|.|...++ +....
T Consensus 321 etLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLR-HtITS 390 (800)
T 3oc3_A 321 ELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFT-SPVPE 390 (800)
T ss_dssp HHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGT-CSSHH
T ss_pred HHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhc-CCcHH
Confidence 9999888 222221 2233444444432 25566667788888775531 1112244457888888 89999
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhCCchHHH-HHHhhcCCHHHHHHHHHHH
Q 014196 297 CQELSAYILMILAHQSSEQRDKMAKSGIVHVS-LQLALLGSPLAQRRASKLL 347 (429)
Q Consensus 297 ~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L-~~ll~~~~~~~k~~A~~lL 347 (429)
+|...+.+|..+. +.. ++..+ ..++...++.+++.+..+.
T Consensus 391 VR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 391 VRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9998888887665 111 22222 2355566777776666544
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.52 Score=43.56 Aligned_cols=196 Identities=10% Similarity=0.111 Sum_probs=119.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcC-cHHHHHHhhcCCCHHHHHHHHHHHHHhc----cCCCchHH
Q 014196 76 KSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELG-VIQMLVSMVSTEVIGRRRAAIKALIQLA----NGTYTNKA 150 (429)
Q Consensus 76 ~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G-~i~~Lv~lL~s~~~~~~~~A~~aL~nLa----~~~~~nk~ 150 (429)
.+...|-+.+...+.+|+..|......+++ ..+...+ .++.+.--+.+.++.+...++.+|..+. ..+.....
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~ 127 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ 127 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 445666677888888888888886654432 2232222 2333333445678888888887776653 21111111
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-CC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA-VL 229 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~ 229 (429)
.-+ .-.+|.|+.-+.......|+.+-.++..+.... .-....+.++.-+.+.+. ..+..++..+.++-. +.
T Consensus 128 ~ea-~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~------~~~~v~~~l~~g~ksKN~-R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 128 EEV-SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV------GPLKMTPMLLDALKSKNA-RQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHH-HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHGGGCSCH-HHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHccCCH-HHHHHHHHHHHHHHHhcC
Confidence 111 125677777777777777777766666665321 112346778887888876 788888888877653 22
Q ss_pred CChhHHHhcCcH---HHHHHhccCCc-chHHHHHHHHHHhhC--ChhcHHHHhcCCCChHHHHHhc
Q 014196 230 DNARPMVSNGVV---HTLLKLCSMKE-RLSEKSLATLGNLVV--TSTGKKAMEDSPLVPESLIEIL 289 (429)
Q Consensus 230 ~n~~~iv~~G~v---~~Lv~lL~~~~-~~~~~a~~~L~~La~--~~e~~~~i~~~~~i~~~Lv~~L 289 (429)
-. ...++ |.+..++.|++ .++..|+.++..+-. .+..++.+ |.+++.-.+++
T Consensus 200 ~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l---g~L~~~~~~~l 257 (266)
T 2of3_A 200 IS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA---GRMADKDKSLV 257 (266)
T ss_dssp SG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH---CCCCHHHHHHH
T ss_pred CC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH---hcCCHHHHHHH
Confidence 22 23478 99999999987 888888888875543 23333333 33554444444
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.027 Score=51.64 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=18.2
Q ss_pred hhhHH-HHHHHHhccccccCCCCCCCcccchhhHHH
Q 014196 12 QFFSR-IRQFIQSKSARRRQNEPNHNHEKSRTLKNI 46 (429)
Q Consensus 12 ~TydR-Ie~W~~~g~~~T~~~L~~~~L~PN~~Lr~l 46 (429)
-+|.| |+++|........+-+.+ |+-..|..
T Consensus 38 ~~~~~ri~~~~~~~p~l~~~ll~d----~~~~VR~~ 69 (244)
T 1lrv_A 38 VESGRQIDRFFRNNPHLAVQYLAD----PFWERRAI 69 (244)
T ss_dssp SSCHHHHHHHHHHCGGGGGGGTTC----SSHHHHHH
T ss_pred cCcHHHHHHHHcCCHHHHHHHhcC----CCHHHHHH
Confidence 57888 999996643333344444 55554443
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.95 E-value=1.3 Score=40.45 Aligned_cols=199 Identities=17% Similarity=0.175 Sum_probs=122.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHH-------hhcCCC-----HHHHHHHHHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVS-------MVSTEV-----IGRRRAAIKALIQ 140 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~-------lL~s~~-----~~~~~~A~~aL~n 140 (429)
+..++..|..+ +.+..|+.+|..--..-++..-.+=. .|.+..|++ .|..+. ..-..+|+..|..
T Consensus 5 i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQc 82 (268)
T 2fv2_A 5 IYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQC 82 (268)
T ss_dssp HHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHH
Confidence 45556656553 34556665555432222333333433 466666644 232222 2234567777888
Q ss_pred hccCCCchHHHHHhcCccchhhhhccCCC-----HHHHHHHHHHHHHhhccCCCccccc---cCCcHHHHHHhhhcCCcH
Q 014196 141 LANGTYTNKAIMVEAGILTKLPKNVDAVD-----ESTRHEFGELLLSLSSLANTHIPLS---SSEILPFLVGILESGSSV 212 (429)
Q Consensus 141 La~~~~~nk~~iv~~G~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~ 212 (429)
+|.|+ +.|..+.++...-.|-..|+..+ .-.|-.+.+++..|...++ ...|. +.+.||..++.++.|+.
T Consensus 83 vAshp-etr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd-~eVi~fLL~tEiiplCLrime~Gse- 159 (268)
T 2fv2_A 83 VASHP-ETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDE-QEVINFLLTTEIIPLCLRIMESGSE- 159 (268)
T ss_dssp HHHCT-TTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCC-HHHHHHHHHTTHHHHHHHHHHHSCH-
T ss_pred HHcCc-chhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCc-HHHHHHHHhhhHHHHHHHHHhhccH-
Confidence 89887 58999999988766777776544 2345556678888886543 33333 68899999999999997
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHhc-C-------cHHHHHHhc-cCCc-chHHHHHHHHHHhhCChhcHHHHhc
Q 014196 213 ETKELCIGALYNLSAVLDNARPMVSN-G-------VVHTLLKLC-SMKE-RLSEKSLATLGNLVVTSTGKKAMED 277 (429)
Q Consensus 213 ~~~~~A~~aL~nLs~~~~n~~~iv~~-G-------~v~~Lv~lL-~~~~-~~~~~a~~~L~~La~~~e~~~~i~~ 277 (429)
-.|.-|.-.+..+-.++.....+... + ++..++.-+ .+++ .+.++.+.+-..|+.++..|.++.+
T Consensus 160 lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 160 LSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 56777777777776655544444331 2 222233322 2344 7778888887888888888887765
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.046 Score=50.14 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=48.4
Q ss_pred hcCCCHHHHHHHHHH-----HHHHhh-hchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHh
Q 014196 81 LHFGSWEEKEMAAKE-----IEKLAK-EDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVE 154 (429)
Q Consensus 81 L~~~~~~~~~~Aa~~-----L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~ 154 (429)
+.++++.++..|+.. +..++. .++..|...++.-..+.|..++.+++..++..++..| .
T Consensus 59 l~d~~~~VR~~AA~~l~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d~~VR~~aA~~l---~------------ 123 (244)
T 1lrv_A 59 LADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRL---P------------ 123 (244)
T ss_dssp TTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS---C------------
T ss_pred hcCCCHHHHHHHHHhCCHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCCHHHHHHHHHhC---C------------
Confidence 356677788777743 233332 3445666666544446777777888888887776632 1
Q ss_pred cCccchhhhhccCCCHHHHHHHHH
Q 014196 155 AGILTKLPKNVDAVDESTRHEFGE 178 (429)
Q Consensus 155 ~G~i~~Lv~lL~~~~~~~~~~aa~ 178 (429)
.+.|..+++..+..+|..++.
T Consensus 124 ---~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 124 ---LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp ---TGGGGGGTTCSSHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCHHHHHHHHH
Confidence 123455566666777766665
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.68 Score=50.78 Aligned_cols=253 Identities=9% Similarity=0.096 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhc------CCCHHHHHHHHHHHHHhccCCCchHHHHHh----cCc
Q 014196 88 EKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVS------TEVIGRRRAAIKALIQLANGTYTNKAIMVE----AGI 157 (429)
Q Consensus 88 ~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~------s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~----~G~ 157 (429)
.+..|...|..++...+ ..+.. -.++.+-.++. +.+...+++|+.+++.++.+.......+.. ...
T Consensus 377 ~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp HHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred cHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 45566777777776542 12211 12334444454 456678999999999997542100000000 011
Q ss_pred cch----hhhhccCC---CHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC
Q 014196 158 LTK----LPKNVDAV---DESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLD 230 (429)
Q Consensus 158 i~~----Lv~lL~~~---~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 230 (429)
.+. ++..++++ .+-+|..++++|..++..- . ... -...++.+++.|.+.+. .++..|+.||.+++....
T Consensus 453 ~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~-~~~-l~~~l~~l~~~L~d~~~-~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 453 VDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-T-KAQ-LIELMPILATFLQTDEY-VVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-C-HHH-HHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-C-HHH-HHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHhccc
Confidence 111 22234444 5777888888988887542 1 111 23457778888877665 789999999999987422
Q ss_pred ---------ChhHHHh--cCcHHHHHHhccCC----c--chHHHHHHHHHHhhCC--hhcHHHHhcCCCChHHHHHhccc
Q 014196 231 ---------NARPMVS--NGVVHTLLKLCSMK----E--RLSEKSLATLGNLVVT--STGKKAMEDSPLVPESLIEILTW 291 (429)
Q Consensus 231 ---------n~~~iv~--~G~v~~Lv~lL~~~----~--~~~~~a~~~L~~La~~--~e~~~~i~~~~~i~~~Lv~~L~~ 291 (429)
.+..+.. ...++.|+.++... . ...+.++.+|..++.. ++....+. .+.+.|+..+..
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~---~l~~~L~~~l~~ 605 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP---QLLAQFIEIVTI 605 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH---HHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHH
Confidence 1222221 23445555565543 0 1335566666655431 11111110 011234443321
Q ss_pred ----CCChhHHHHHHHHHHHHhhC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 292 ----EEKPKCQELSAYILMILAHQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 292 ----~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
..++.....+..+|..++.. +++....+ ...++|.+..++..........+..++..+-.
T Consensus 606 ~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 606 MAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 23445555677777777664 33333222 33467888888887655555556666555544
|
| >3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.053 Score=41.40 Aligned_cols=52 Identities=10% Similarity=0.005 Sum_probs=39.2
Q ss_pred CCcchhhhhhhhHH--HHHHHHhcc--c--cccCCC-CCCCcccchhhHHHHHHHHHhh
Q 014196 3 IPSSSYMRLQFFSR--IRQFIQSKS--A--RRRQNE-PNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 3 ~~~~~~~~~~TydR--Ie~W~~~g~--~--~T~~~L-~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
.|++---=|+||-+ |++|+.... . ..++++ ....+.||..|+++|+.|...+
T Consensus 25 ~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~ 83 (92)
T 3ztg_A 25 DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNET 83 (92)
T ss_dssp SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHH
T ss_pred CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHH
Confidence 45443113899999 999997543 2 777776 4458999999999999999866
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.64 Score=42.45 Aligned_cols=98 Identities=19% Similarity=0.137 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCC----hhHHHHHHHHHHHHhh-CCHHHHHHHHhCCchHHH
Q 014196 254 LSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEK----PKCQELSAYILMILAH-QSSEQRDKMAKSGIVHVS 328 (429)
Q Consensus 254 ~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s----~~~~e~A~~~L~~L~~-~~~~~~~~i~~~G~v~~L 328 (429)
-+.+|++.|.-+|.+|+.|..+.++. +|--|-.+|+.... +..+-.+.++++.+.. .++++..-+.+.+++|..
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl~a~-iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFLAAH-IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHTT-GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHcc-chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHH
Confidence 45678888889999999999999964 44467777763222 2346677888888776 467888888999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 329 LQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 329 ~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
+..++.|++..|.-|..+++.+=.
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhc
Confidence 999999999999999998876653
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=93.15 E-value=4 Score=40.71 Aligned_cols=183 Identities=21% Similarity=0.173 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
....++.. ..++...|+-|+..|....++-|+..... |..++++.+++|..+|..|+..|..+|.+ ++-..|
T Consensus 30 ~y~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki 101 (507)
T 3u0r_A 30 AYQVILDG-VKGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV 101 (507)
T ss_dssp HHHHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH
Confidence 34445543 45578999999999999999988876653 77899999999999999999999999988 354444
Q ss_pred HhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc-cCCCC
Q 014196 153 VEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLS-AVLDN 231 (429)
Q Consensus 153 v~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs-~~~~n 231 (429)
++ .|+++|+..+.......-.+|..|-..+. .+.+..|..-+.+++. .+++.++.-|..=- .-+.+
T Consensus 102 aD-----vL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e-~~Rer~lkFi~~kl~~l~~~ 168 (507)
T 3u0r_A 102 AD-----ILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGED-IVRERAIKFLSTKLKTLPDE 168 (507)
T ss_dssp HH-----HHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCH-HHHHHHHHHHHHHGGGSCTT
T ss_pred HH-----HHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccch-HHHHHHHHHHHHHHhhcchh
Confidence 43 47899987665444444445555543321 1234455555555654 67877776665322 22222
Q ss_pred -hhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHH--hhCChhcHHHHh
Q 014196 232 -ARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGN--LVVTSTGKKAME 276 (429)
Q Consensus 232 -~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~--La~~~e~~~~i~ 276 (429)
...=++.-++..+..+|.|-. .--...+.+|.. +..++.+++.++
T Consensus 169 ~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv 217 (507)
T 3u0r_A 169 VLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLV 217 (507)
T ss_dssp TSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 223333344455555565432 222334444432 223444554443
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.32 Score=49.46 Aligned_cols=211 Identities=14% Similarity=0.086 Sum_probs=125.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhcc------CCC-------HHHHHHHHHHHHH
Q 014196 116 IQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVD------AVD-------ESTRHEFGELLLS 182 (429)
Q Consensus 116 i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~------~~~-------~~~~~~aa~~L~~ 182 (429)
.+.|+.-|-++.-++|..|+.+|+.+................ +..++++. .++ ..+|+.+|-+|..
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 456777778888999999999999986443110000000111 22333321 111 4578888888888
Q ss_pred hhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHH
Q 014196 183 LSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLAT 261 (429)
Q Consensus 183 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~ 261 (429)
+ ..-+.. ..++..|+..+.... .+++..++-.|.++.. -... =.++++.++..|.|.+ +++.-|+++
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~-WEVRHGGLLGLKYL~D---LL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGD-WQVQFSGLIALGYLKE---FVED--KDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSC-HHHHHHHHHHHHHTGG---GCCC--HHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCC-eeehhhhHHHHHHHHH---HHHH--HHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 7 432222 344555555444444 4899999999999911 1111 1467888888898886 899999999
Q ss_pred HHHhhCChhcHHHHhcCCCChHHHHHhcccC-CChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHH
Q 014196 262 LGNLVVTSTGKKAMEDSPLVPESLIEILTWE-EKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQ 340 (429)
Q Consensus 262 L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~-~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k 340 (429)
|.-++ .++.-..+.+ .+.+.|... +-..........|..||..... .-.....+|.|.-.+...-..+|
T Consensus 323 LiPIA-~p~~l~~LL~------iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR 392 (800)
T 3oc3_A 323 LCHFP-ITDSLDLVLE------KCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR 392 (800)
T ss_dssp HTTSC-CSSTHHHHHH------HHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred hhhhc-chhhHHHHHH------HHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence 98887 3333333332 455555421 1112233445566677765421 11123678888888888888888
Q ss_pred HHHHHHHHH
Q 014196 341 RRASKLLQW 349 (429)
Q Consensus 341 ~~A~~lL~~ 349 (429)
..+..+|..
T Consensus 393 ~AVL~TL~t 401 (800)
T 3oc3_A 393 TSILNMVKN 401 (800)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHH
Confidence 877766543
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.77 E-value=2.7 Score=38.52 Aligned_cols=187 Identities=14% Similarity=0.034 Sum_probs=108.8
Q ss_pred CccchhhhhccCCCHHHHHHHHHHHHHhhccCC---Cccc-cc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCC
Q 014196 156 GILTKLPKNVDAVDESTRHEFGELLLSLSSLAN---THIP-LS-SSEILPFLVGILESGSSVETKELCIGALYNLSAVLD 230 (429)
Q Consensus 156 G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~---~~~~-i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 230 (429)
.-+| |-.-|.+.....|.++...|..+-.... .... +. -...++.+-+.+.+.+. .+...++.+|..++..-.
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~-~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV-VAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH-HHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHhh
Confidence 3455 4455667778888888776655432211 1111 11 12345566677776666 688888888888765311
Q ss_pred ---C-h--hHHHhcCcHHHHHH-hccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHH
Q 014196 231 ---N-A--RPMVSNGVVHTLLK-LCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSA 302 (429)
Q Consensus 231 ---n-~--~~iv~~G~v~~Lv~-lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~ 302 (429)
. . ....-...+|.|++ .|.+.. .+++.+..+|..++........+. ..++..+. +.++..+..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~------e~l~~~l~-~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSV------ELVIPFFE-KKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHH------HHHGGGGG-CSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHH------HHHHHHHh-ccCHHHHHHHH
Confidence 1 1 12223466788886 476654 677888887776654221112221 24555666 68899988888
Q ss_pred HHHHHHhh-CCHH--HHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 303 YILMILAH-QSSE--QRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 303 ~~L~~L~~-~~~~--~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
..|..+-. +... .....+. .+++.+..++.+.++.+|..|..++.-+..
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 88876543 1111 0111111 245567777888899999999987766654
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.39 E-value=2.6 Score=39.64 Aligned_cols=163 Identities=13% Similarity=0.086 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHH----HhhcC-CCHHHHHHHHHHHHHhccCCCc
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLV----SMVST-EVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv----~lL~s-~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
.+..+.+.++ =..+.+.-++..+|.++. ++.....+.+.+.-..++ ..+.+ ..+..+.-++.++.|+-.+. .
T Consensus 104 ~l~~l~kil~-WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~ 180 (304)
T 3ebb_A 104 QLQILWKAIN-CPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-A 180 (304)
T ss_dssp HHHHHHHHHT-SCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-H
T ss_pred HHHHHHHHHc-CCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-h
Confidence 3444445442 223445566777776665 455555665543333333 33332 34666888999999998886 5
Q ss_pred hHHHHHhc--CccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 014196 148 NKAIMVEA--GILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS-SSEILPFLVGILESGSSVETKELCIGALYN 224 (429)
Q Consensus 148 nk~~iv~~--G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 224 (429)
.+..+... ..++.+..++...+...+..++.+++|++........+. ....+..+..++......++...++.||.+
T Consensus 181 g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 77777642 244445555444556677777889999986531111111 111344455555544334677789999999
Q ss_pred hccCCCChhHHHhc
Q 014196 225 LSAVLDNARPMVSN 238 (429)
Q Consensus 225 Ls~~~~n~~~iv~~ 238 (429)
|...+.....+.+.
T Consensus 261 L~~~~~~~~~lak~ 274 (304)
T 3ebb_A 261 LISDDSNAVQLAKS 274 (304)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHhCChhHHHHHHH
Confidence 98765544444443
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=91.26 E-value=1.3 Score=48.57 Aligned_cols=185 Identities=11% Similarity=0.087 Sum_probs=106.7
Q ss_pred HHHHHhcCC---CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCC------
Q 014196 76 KSVKRLHFG---SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTY------ 146 (429)
Q Consensus 76 ~lv~~L~~~---~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~------ 146 (429)
.++..|.++ ++..|..|++.|..++..- ....+ ..+++.++..|.++++.++.+|+++|.+++...+
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~ 534 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPA 534 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCC
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccccccccc
Confidence 345556666 7899999999999998642 12222 2357888999988889999999999999886421
Q ss_pred -c-hHHHHHh--cCccchhhhhccCCC---H--HHHHHHHHHHHHhhccC--CCccccccCCcHHHHHHhhhc----CCc
Q 014196 147 -T-NKAIMVE--AGILTKLPKNVDAVD---E--STRHEFGELLLSLSSLA--NTHIPLSSSEILPFLVGILES----GSS 211 (429)
Q Consensus 147 -~-nk~~iv~--~G~i~~Lv~lL~~~~---~--~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~----~~~ 211 (429)
. .+..+.. ...++.|..+++... . ...+.+..+|..+.... +..+ . -...++.|...+.. ++.
T Consensus 535 ~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~-~~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 535 FIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-L-FPQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp BSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-G-HHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-H-HHHHHHHHHHHHHHHHhCCCC
Confidence 1 1222221 123444555555531 1 12233444555443221 1111 1 11245555555543 333
Q ss_pred HHHHHHHHHHHHHhccC-CCChhHHHhcCcHHHHHHhccCC-cchHHHHHHHHHHhh
Q 014196 212 VETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMK-ERLSEKSLATLGNLV 266 (429)
Q Consensus 212 ~~~~~~A~~aL~nLs~~-~~n~~~iv~~G~v~~Lv~lL~~~-~~~~~~a~~~L~~La 266 (429)
......++.+|..+... ......-.+...+|.+...|... .++.+.+..++..+.
T Consensus 613 ~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 35566678888877764 22233334456778888877654 266666666665544
|
| >2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.16 E-value=0.089 Score=40.73 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=38.5
Q ss_pred hhhhhhHH--HHHHHHhccc--cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 9 MRLQFFSR--IRQFIQSKSA--RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 9 ~~~~TydR--Ie~W~~~g~~--~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
-=|++|-+ |++|+..+.. ..++++....+.||..|+++|+.|....
T Consensus 40 ~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 40 QCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 35799988 9999987655 7777777778999999999999998754
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.54 Score=44.43 Aligned_cols=131 Identities=13% Similarity=0.044 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHhc--CcHHHHHHhccCCc-chHHHHHHHHHHhhCC------hhcHHHHhcCCCChH
Q 014196 213 ETKELCIGALYNLSAVLDNARPMVSN--GVVHTLLKLCSMKE-RLSEKSLATLGNLVVT------STGKKAMEDSPLVPE 283 (429)
Q Consensus 213 ~~~~~A~~aL~nLs~~~~n~~~iv~~--G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~------~e~~~~i~~~~~i~~ 283 (429)
..+.-++++++|+-.++..+..+... .+++.+...+.+.. .++-.++.++.|++.. .+.+.. +..
T Consensus 163 ~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~------ll~ 236 (304)
T 3ebb_A 163 ANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ------CLS 236 (304)
T ss_dssp HHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH------HHH
T ss_pred HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH------HHH
Confidence 45677899999999888777666542 33444444444333 4555555566698862 111111 222
Q ss_pred HHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHH
Q 014196 284 SLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQW 349 (429)
Q Consensus 284 ~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~ 349 (429)
.+..++....+.+..-.++.+|+++...+.+..+....-|+-..+-.+... .++++.+.|..+|+.
T Consensus 237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 344455434567777888889999887777777766667765555555554 367777877777654
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=2.4 Score=40.23 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=131.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHH----HHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIK----KLMAE-LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r----~~i~~-~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
.+..++..|..-+.+.++.++....++.+.....| ..+.. ..++..|+..-+ ++++--.+-..|+.+..+. .
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir~e-~ 155 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHE-P 155 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSH-H
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHHhH-H
Confidence 45677777777788999999888888877654433 22222 233444444443 3445555556677777774 5
Q ss_pred hHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc------cCCcHHHHHHhhhcCCcHHHHHHHHHH
Q 014196 148 NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS------SSEILPFLVGILESGSSVETKELCIGA 221 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~------~~g~i~~Lv~lL~~~~~~~~~~~A~~a 221 (429)
....|...+.+-.+...++.+.-++-..|..++..|-. .++...+ -.......-++|.+++. -+++.++..
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt--~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NY-VTkRQSlKL 232 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLT--RHKLLSAEFLEQHYDRFFSEYEKLLHSENY-VTKRQSLKL 232 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHH--SSHHHHHHHHHHTHHHHHHHHHHHTTCSSH-HHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHh--ccHHHHHHHHHHhHHHHHHHHHHHhcCCcc-hhHHHHHHH
Confidence 66777788888889999988888777777777776643 2333322 12356677789999998 689999999
Q ss_pred HHHhccCCCChhHHH----hcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC
Q 014196 222 LYNLSAVLDNARPMV----SNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 222 L~nLs~~~~n~~~iv----~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~ 268 (429)
|..|-....|...|. +..-+..++.+|+|.+ .++-.|.-+.--.+.+
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 999998888875543 3466778888999886 7788888777654444
|
| >3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.21 Score=40.42 Aligned_cols=45 Identities=7% Similarity=0.009 Sum_probs=36.6
Q ss_pred hhhhhhHH--HHHHHHhcc-c--cccCCCCC-CCcccchhhHHHHHHHHHh
Q 014196 9 MRLQFFSR--IRQFIQSKS-A--RRRQNEPN-HNHEKSRTLKNINCQEEKQ 53 (429)
Q Consensus 9 ~~~~TydR--Ie~W~~~g~-~--~T~~~L~~-~~L~PN~~Lr~lI~~W~~~ 53 (429)
-=|+||-+ |++|+..+. . ..++++.. ..+.||..|+++|+.|...
T Consensus 69 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 69 VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred eCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 34799999 999998654 3 77777765 6899999999999998754
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=89.23 E-value=4.4 Score=33.34 Aligned_cols=100 Identities=4% Similarity=-0.054 Sum_probs=73.1
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc-hH
Q 014196 27 RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED-VK 105 (429)
Q Consensus 27 ~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~-~~ 105 (429)
.|...+.. ||.. +|.+-|... ...+ ......+..+.++|.++++.++..|+..|..+.+.. ..
T Consensus 13 AT~~~l~~----~dw~---~ileicD~I-----~~~~----~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~ 76 (140)
T 3ldz_A 13 ATSEMNTA----EDWG---LILDICDKV-----GQSR----TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI 76 (140)
T ss_dssp HTCTTSSS----CCHH---HHHHHHHHH-----TTST----THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH
T ss_pred HcCCCCCC----cCHH---HHHHHHHHH-----HCCC----cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH
Confidence 45555544 7777 567777643 1111 234667888999999999999999999998888754 34
Q ss_pred HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 014196 106 IKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLA 142 (429)
Q Consensus 106 ~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa 142 (429)
....+.....+.-|+.++...++.+++..+..+...+
T Consensus 77 f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 77 FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 5566666677888888887788999999988887765
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=88.80 E-value=1.9 Score=36.62 Aligned_cols=109 Identities=6% Similarity=-0.015 Sum_probs=77.3
Q ss_pred hhhhHH-HHHHHHhccccccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHH
Q 014196 11 LQFFSR-IRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEK 89 (429)
Q Consensus 11 ~~TydR-Ie~W~~~g~~~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~ 89 (429)
...||+ |++ .|...+.. ||.++ |.+-|.... ..+ ......+..+.++|.++++.++
T Consensus 13 ~~p~~~~Iek-------ATs~~~~~----~Dw~~---~leicD~I~-----~~~----~~~keA~ral~krl~~~n~~vq 69 (163)
T 1x5b_A 13 ANPFEQDVEK-------ATNEYNTT----EDWSL---IMDICDKVG-----STP----NGAKDCLKAIMKRVNHKVPHVA 69 (163)
T ss_dssp CCTTHHHHHH-------HTCTTCSS----CCHHH---HHHHHHHHH-----HSS----SHHHHHHHHHHHHHTCSSHHHH
T ss_pred CChHHHHHHH-------HcCCCCCC----cCHHH---HHHHHHHHh-----CCC----ccHHHHHHHHHHHHcCCCHHHH
Confidence 355776 653 35544444 77774 556665320 011 1346678889999999999999
Q ss_pred HHHHHHHHHHhhh-chHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 014196 90 EMAAKEIEKLAKE-DVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLA 142 (429)
Q Consensus 90 ~~Aa~~L~~La~~-~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa 142 (429)
..|+..|-.+.+. .......+.....+.-|+.++.. .++.+++.++..+...+
T Consensus 70 l~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 70 LQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 9999999988876 35566777777788888888875 67899999988887765
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=88.37 E-value=9.2 Score=34.20 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=77.6
Q ss_pred HHHHhcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHhccCCCchHHHHH-hcCccchhhhhccCCCHHHHHH
Q 014196 108 KLMAELGVIQMLVSMVST-----------EVIGRRRAAIKALIQLANGTYTNKAIMV-EAGILTKLPKNVDAVDESTRHE 175 (429)
Q Consensus 108 ~~i~~~G~i~~Lv~lL~s-----------~~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~i~~Lv~lL~~~~~~~~~~ 175 (429)
+.+ ..||+..|+.+|.. .+...+..++.+|..+.... .....+. ..+++..|...|.+....++..
T Consensus 38 ~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~-~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~ 115 (233)
T 2f31_A 38 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMID 115 (233)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSH-HHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred HHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCCh-HHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence 344 46788888888753 13566778888888887654 3455555 4568888899898888888888
Q ss_pred HHHHHHHhhccCC--C-cccc----------ccCCcHHHHHHhhhcCCcHHHHHHHHHHHHH-hccCCCC
Q 014196 176 FGELLLSLSSLAN--T-HIPL----------SSSEILPFLVGILESGSSVETKELCIGALYN-LSAVLDN 231 (429)
Q Consensus 176 aa~~L~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n-Ls~~~~n 231 (429)
+..+|..+|..++ + ...+ .+..-...+++.+.+.+..+.+. ++..+.| +...+++
T Consensus 116 ~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~-~~m~lIN~li~~~~d 184 (233)
T 2f31_A 116 AAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEE 184 (233)
T ss_dssp HHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHH-HHHHHHHHHHCCCCC
Confidence 8888888886653 2 2222 12334566777777544435554 4444444 4444443
|
| >1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.68 E-value=0.36 Score=40.54 Aligned_cols=44 Identities=5% Similarity=-0.030 Sum_probs=36.9
Q ss_pred hhhhhhHH--HHHHHHhcc-c--cccCCCCCC-CcccchhhHHHHHHHHH
Q 014196 9 MRLQFFSR--IRQFIQSKS-A--RRRQNEPNH-NHEKSRTLKNINCQEEK 52 (429)
Q Consensus 9 ~~~~TydR--Ie~W~~~g~-~--~T~~~L~~~-~L~PN~~Lr~lI~~W~~ 52 (429)
-=|+||-+ |++|+..+. . +.++++... .+.||..|+++|..|..
T Consensus 95 ~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 95 ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 34799999 999998765 3 788888766 89999999999998874
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=86.64 E-value=16 Score=35.43 Aligned_cols=202 Identities=14% Similarity=0.098 Sum_probs=114.9
Q ss_pred ccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHhhhch-HHHHHHHhcCc
Q 014196 38 EKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEK-EMAAKEIEKLAKEDV-KIKKLMAELGV 115 (429)
Q Consensus 38 ~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~-~~Aa~~L~~La~~~~-~~r~~i~~~G~ 115 (429)
.|...=+.+|.+|.... ..+-........ -...|..|.++....+ ...+..|+---+..+ .--+.++ .+|
T Consensus 39 ~~~e~Kw~mi~~~~~~~-~~~~~~~~~~~s------P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~G 110 (383)
T 3eg5_B 39 KDIVIKREMVSQYLHTS-KAGMNQKESSRS------AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEG 110 (383)
T ss_dssp SCHHHHHHHHHHHHHHC----------CCC------HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHh-hhccccccCCCC------HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-Hcc
Confidence 37777788998887542 111000000111 1234566665532222 234555554333332 2224445 678
Q ss_pred HHHHHHhhcC-----------CCHHHHHHHHHHHHHhccCCCchHHHHH-hcCccchhhhhccCCCHHHHHHHHHHHHHh
Q 014196 116 IQMLVSMVST-----------EVIGRRRAAIKALIQLANGTYTNKAIMV-EAGILTKLPKNVDAVDESTRHEFGELLLSL 183 (429)
Q Consensus 116 i~~Lv~lL~s-----------~~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~L 183 (429)
+..|+.+|.. .+...+..++.+|..+.... .....+. ...+|..|+.+|.+....++..+..+|..+
T Consensus 111 l~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~-~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~l 189 (383)
T 3eg5_B 111 LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSAL 189 (383)
T ss_dssp HHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSH-HHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcch-hhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 9999998852 24577888889998887654 3555555 456888899999888888888888888888
Q ss_pred hccCC--C-cccc----------ccCCcHHHHHHhhhcCCcHHHHHHHHHHHHH-hccCCCCh-------hHHHhcCcHH
Q 014196 184 SSLAN--T-HIPL----------SSSEILPFLVGILESGSSVETKELCIGALYN-LSAVLDNA-------RPMVSNGVVH 242 (429)
Q Consensus 184 s~~~~--~-~~~i----------~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n-Ls~~~~n~-------~~iv~~G~v~ 242 (429)
|..++ + ...+ ++..-...++..|.++...+.+. ++..|.| +...+++. ..+...|..+
T Consensus 190 c~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~-~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~ 268 (383)
T 3eg5_B 190 CILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEELDFRVHIRSELMRLGLHQ 268 (383)
T ss_dssp HTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHH
T ss_pred HhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHH
Confidence 86653 2 2221 13445677888888754435655 4444544 44444432 2334556555
Q ss_pred HHHHhccC
Q 014196 243 TLLKLCSM 250 (429)
Q Consensus 243 ~Lv~lL~~ 250 (429)
.+-. |+.
T Consensus 269 il~~-lr~ 275 (383)
T 3eg5_B 269 VLQE-LRE 275 (383)
T ss_dssp HHHH-HTT
T ss_pred HHHH-Hhc
Confidence 4443 553
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=86.62 E-value=2.5 Score=36.18 Aligned_cols=109 Identities=11% Similarity=0.070 Sum_probs=77.7
Q ss_pred HHHHHHhccccccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014196 17 IRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEI 96 (429)
Q Consensus 17 Ie~W~~~g~~~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L 96 (429)
+++|++. .|...+.. ||.+ +|.+-|..... .+ ......+..+.++|+++++.++..|+..|
T Consensus 14 ~~~~Iek---ATs~~l~~----~Dw~---~ileicD~I~~-----~~----~~~k~A~ral~krl~~~n~~vql~AL~LL 74 (171)
T 1juq_A 14 LESWLNK---ATNPSNRQ----EDWE---YIIGFCDQINK-----EL----EGPQIAVRLLAHKIQSPQEWEALQALTVL 74 (171)
T ss_dssp HHHHHHH---HTCTTCSS----CCHH---HHHHHHHHHHH-----ST----THHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHH---HcCCCCCC----cCHH---HHHHHHHHHHc-----CC----ccHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4444433 35555543 7876 46677763310 11 12466788899999999999999999999
Q ss_pred HHHhhhc-hHHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHhccC
Q 014196 97 EKLAKED-VKIKKLMAELGVIQMLVSMVST------EVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 97 ~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s------~~~~~~~~A~~aL~nLa~~ 144 (429)
-.+.+.. ......+.....+.-|+.++.. .+..+++.++..+...+..
T Consensus 75 d~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 75 EACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9998863 4567778888889999999863 3588999998888877643
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=86.40 E-value=6.9 Score=37.44 Aligned_cols=110 Identities=19% Similarity=0.163 Sum_probs=82.7
Q ss_pred HHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccc--ccCCcHHHHHHhhhcCCcHHH
Q 014196 137 ALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL--SSSEILPFLVGILESGSSVET 214 (429)
Q Consensus 137 aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i--~~~g~i~~Lv~lL~~~~~~~~ 214 (429)
-|.||-.++...-...|++++|..+..+++-+..+..+.-..+|...| +.+..- --...+|.+++.+.-....++
T Consensus 265 DLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVS---DaksL~~t~L~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 265 DLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVS---DAKALAKTPLENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHT---TCGGGGTSCCTTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeec---chHHHhhccccccchHHHHHhccCCCcce
Confidence 356777776333678899999999999999888888777777888887 333221 135678999998875433478
Q ss_pred HHHHHHHHHHhccCCCCh-hHHHhcCcHHHHHHhcc
Q 014196 215 KELCIGALYNLSAVLDNA-RPMVSNGVVHTLLKLCS 249 (429)
Q Consensus 215 ~~~A~~aL~nLs~~~~n~-~~iv~~G~v~~Lv~lL~ 249 (429)
....-+-|.|...|.... ...+..|+++.|-..+.
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 888899999999887665 55677899999888654
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=10 Score=31.57 Aligned_cols=101 Identities=10% Similarity=-0.004 Sum_probs=74.9
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc-hH
Q 014196 27 RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED-VK 105 (429)
Q Consensus 27 ~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~-~~ 105 (429)
.|...+.. ||.. +|.+.|.... ..+ ......+..+.++|.+.++.++..|+..|-.+.+.. ..
T Consensus 19 ATs~~l~~----~dw~---~ileicD~I~-----~~~----~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~ 82 (149)
T 3g2s_A 19 ATNPLNKE----LDWA---SINGFCEQLN-----EDF----EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR 82 (149)
T ss_dssp HSCTTCSS----CCHH---HHHHHHHHGG-----GSS----SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH
T ss_pred HcCCCCCC----cCHH---HHHHHHHHHH-----CCC----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH
Confidence 46665554 7777 5777787431 111 134667889999999999999999999999888754 34
Q ss_pred HHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHhcc
Q 014196 106 IKKLMAELGVIQMLVSMVST------EVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 106 ~r~~i~~~G~i~~Lv~lL~s------~~~~~~~~A~~aL~nLa~ 143 (429)
....+....++.-|+.++.. .++.+++..+..+...+.
T Consensus 83 fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 83 FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 56777777888889999863 578999999888887753
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=85.60 E-value=16 Score=32.59 Aligned_cols=126 Identities=11% Similarity=0.081 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhccCCCChhHHHhc-CcHHHHHHhccCCc-chHHHHHHHHHHhhCCh--hc-HHHHhcC---------
Q 014196 213 ETKELCIGALYNLSAVLDNARPMVSN-GVVHTLLKLCSMKE-RLSEKSLATLGNLVVTS--TG-KKAMEDS--------- 278 (429)
Q Consensus 213 ~~~~~A~~aL~nLs~~~~n~~~iv~~-G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~--e~-~~~i~~~--------- 278 (429)
.....++.+|..+.........++.. +++..|...|..+. .++..++.+|..+|..+ +| ...+.++
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e 148 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE 148 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC
Confidence 45667888999888776666666654 78888888886554 77888888998888754 37 5544322
Q ss_pred CCChHHHHHhcccCCChhHHHHHHHHHHH-HhhC--CH----HHHHHHHhCCchHHHHHHhhcCCHHH
Q 014196 279 PLVPESLIEILTWEEKPKCQELSAYILMI-LAHQ--SS----EQRDKMAKSGIVHVSLQLALLGSPLA 339 (429)
Q Consensus 279 ~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~-L~~~--~~----~~~~~i~~~G~v~~L~~ll~~~~~~~ 339 (429)
..-...+|+.+........+ .++..+.| +... +. ..|..+...|..+.+-.+-..+++..
T Consensus 149 ~~RF~~lv~~l~~~~~~e~~-~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 149 VERFQPLLDGLKSGTSIALK-VGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 215 (233)
T ss_dssp SCTTHHHHHTTSTTSCHHHH-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred cchHHHHHHHHhcCChHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHH
Confidence 22234688888622222222 23333333 3332 22 46677778896665554444455543
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=84.16 E-value=15 Score=39.95 Aligned_cols=212 Identities=11% Similarity=0.056 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhc---c--CCCHHHHHHHHHHHHHhhccCC-CccccccCCcH
Q 014196 126 EVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNV---D--AVDESTRHEFGELLLSLSSLAN-THIPLSSSEIL 199 (429)
Q Consensus 126 ~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL---~--~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i 199 (429)
.+...++.|+.+|..++....... ...++.++.++ . ...+.++..++.++..++..-. +...+ ..++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 456789999999999986642211 12233333322 2 2356778888888888874322 21111 2356
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh--cCcHHHHHHhccCC--c-chHHHHHHHHHHhhCC--hhcH
Q 014196 200 PFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVS--NGVVHTLLKLCSMK--E-RLSEKSLATLGNLVVT--STGK 272 (429)
Q Consensus 200 ~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~--~G~v~~Lv~lL~~~--~-~~~~~a~~~L~~La~~--~e~~ 272 (429)
+.|+..| + + .++..|+.++.+++..- ...+.. .+.+..+..++... + ..+..+..++..++.. ++..
T Consensus 549 ~~l~~~l-~--~-~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 549 NLLVRGL-N--S-SMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHHH-H--S-SCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHh-C--h-HHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 6677666 3 3 57888999999999532 222221 23444455555542 2 6667777777766542 2333
Q ss_pred HHHhcCCCChHHHHHhccc---CC--ChhHHHHHHHHHHHHhh-----CCH--HH------HH--HHHhCCchHHHHHHh
Q 014196 273 KAMEDSPLVPESLIEILTW---EE--KPKCQELSAYILMILAH-----QSS--EQ------RD--KMAKSGIVHVSLQLA 332 (429)
Q Consensus 273 ~~i~~~~~i~~~Lv~~L~~---~~--s~~~~e~A~~~L~~L~~-----~~~--~~------~~--~i~~~G~v~~L~~ll 332 (429)
..... .+.+.+++.+.. .. ++..+......+..|+. .+. +. .. .-....++|.+..++
T Consensus 623 ~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l 700 (971)
T 2x1g_F 623 PKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIA 700 (971)
T ss_dssp HHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHH
Confidence 33222 111123332210 11 23233444444444432 110 00 00 011234777777777
Q ss_pred hcC--CHHHHHHHHHHHHHHHh
Q 014196 333 LLG--SPLAQRRASKLLQWFKD 352 (429)
Q Consensus 333 ~~~--~~~~k~~A~~lL~~l~~ 352 (429)
... ++.+.+.++++++.+-.
T Consensus 701 ~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 701 EMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHH
T ss_pred HhccccHHHHHHHHHHHHHHHH
Confidence 653 67888999988777554
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=83.64 E-value=15 Score=39.69 Aligned_cols=134 Identities=11% Similarity=0.114 Sum_probs=78.7
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCch-HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHH
Q 014196 124 STEVIGRRRAAIKALIQLANGTYTN-KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPF 201 (429)
Q Consensus 124 ~s~~~~~~~~A~~aL~nLa~~~~~n-k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~ 201 (429)
.+.+...++.++++++.++...... ...+.. .++.+..+. ...+.++..++.++..++..- .+... -...++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~--l~~~l~~l~-~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPG--LIGLIPRIS-ISNVQLADTVMFTIGALSEWLADHPVM--INSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHH--HHHHGGGSC-CCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHH--HHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHH
Confidence 4567788999999999998664221 111111 222222222 234667777778888777432 22211 2467888
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHh--cCcHHHHHHhccCC--c-chHHHHHHHHHHhhC
Q 014196 202 LVGILESGSSVETKELCIGALYNLSAVLDNARPMVS--NGVVHTLLKLCSMK--E-RLSEKSLATLGNLVV 267 (429)
Q Consensus 202 Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~--~G~v~~Lv~lL~~~--~-~~~~~a~~~L~~La~ 267 (429)
|+..|.+ + .++..|+.+|.+++..-. ..+.. .+.+..+..++... + ..+.....++..++.
T Consensus 534 l~~~l~~--~-~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 534 VLHALGN--P-ELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHTTC--G-GGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCC--c-hHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 8888855 4 678899999999995321 12221 23344444555532 2 567777777877765
|
| >2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A | Back alignment and structure |
|---|
Probab=82.97 E-value=0.5 Score=37.00 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=37.0
Q ss_pred CcchhhhhhhhHH--HHHHHHhccc--cccCCCCCC----CcccchhhHHHHHHHHH
Q 014196 4 PSSSYMRLQFFSR--IRQFIQSKSA--RRRQNEPNH----NHEKSRTLKNINCQEEK 52 (429)
Q Consensus 4 ~~~~~~~~~TydR--Ie~W~~~g~~--~T~~~L~~~----~L~PN~~Lr~lI~~W~~ 52 (429)
|+..--=|++|-+ |++|+..+.. ..++++... .+.+|..|+++|..|..
T Consensus 28 p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 28 ATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp EEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred cCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 3333245799988 9999987655 666666654 78999999999988764
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=82.50 E-value=12 Score=40.58 Aligned_cols=155 Identities=11% Similarity=0.083 Sum_probs=91.0
Q ss_pred cCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhh---cCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCcc
Q 014196 82 HFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMV---STEVIGRRRAAIKALIQLANGTYTNKAIMVEAGIL 158 (429)
Q Consensus 82 ~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL---~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i 158 (429)
...++..+..++..+..++..-... +...++.++..| .++++.++..++++|...+..-..+... . ...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM-I-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH-H-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH-H-HHHH
Confidence 3457888888999999988542210 012233444333 3357889999999999887542112222 2 3567
Q ss_pred chhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCC-cHHHHHHHHHHHHHhccCC--CChh
Q 014196 159 TKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGS-SVETKELCIGALYNLSAVL--DNAR 233 (429)
Q Consensus 159 ~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~--~n~~ 233 (429)
+.++..++. +.++..|+.+|.+++.. .+..+. -...+..|..++..++ ....+..+..++..++... +...
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 777776754 67788889999999853 233332 1234445555666532 2367777888888887543 2222
Q ss_pred HHHhcCcHHHHHHhc
Q 014196 234 PMVSNGVVHTLLKLC 248 (429)
Q Consensus 234 ~iv~~G~v~~Lv~lL 248 (429)
..+ ...++++...+
T Consensus 608 ~~~-~~l~~~l~~~l 621 (963)
T 2x19_B 608 KNL-HSLISPYIQQL 621 (963)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHH
Confidence 222 24455555544
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=82.30 E-value=6.2 Score=32.77 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=74.9
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chH
Q 014196 27 RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVK 105 (429)
Q Consensus 27 ~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~ 105 (429)
.|...+. .||.+ +|.+-|..... . .......+..+.++|+++++.++..|+..|-.+.+. +..
T Consensus 9 ATs~~l~----~~dw~---~~leicD~I~~-----~----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~ 72 (148)
T 1mhq_A 9 ATDPSMS----EQDWS---AIQNFCEQVNT-----D----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK 72 (148)
T ss_dssp HHCTTCS----SCCHH---HHHHHHHHHHH-----S----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH
T ss_pred HcCCCCC----CcCHH---HHHHHHHHHHc-----C----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH
Confidence 3555444 37876 46677763310 0 123466788999999999999999999999998876 355
Q ss_pred HHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHhcc
Q 014196 106 IKKLMAELGVIQMLVSMVST------EVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 106 ~r~~i~~~G~i~~Lv~lL~s------~~~~~~~~A~~aL~nLa~ 143 (429)
....+....++.-|+.++.. .++.+++.++..+...+.
T Consensus 73 fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 73 FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 67788888889999999874 468999999888877764
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=82.07 E-value=7.7 Score=34.66 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=76.0
Q ss_pred hhhHH-HHHHHHhccccccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHH
Q 014196 12 QFFSR-IRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKE 90 (429)
Q Consensus 12 ~TydR-Ie~W~~~g~~~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~ 90 (429)
-+||. |++ .|...+.. ||.+ +|.+-|... . ..+ ......+..+.++|.+.++.++.
T Consensus 7 ~~~~~~i~k-------AT~~~~~~----~dw~---~ileicD~I---~--~~~----~~~k~a~ral~krl~~~n~~v~l 63 (226)
T 3zyq_A 7 GTFERLLDK-------ATSQLLLE----TDWE---SILQICDLI---R--QGD----TQAKYAVNSIKKKVNDKNPHVAL 63 (226)
T ss_dssp CHHHHHHHH-------HTCTTCSS----CCHH---HHHHHHHHH---H--TTS----SCHHHHHHHHHHHHTCSSHHHHH
T ss_pred chHHHHHHH-------HcCCCCCC----cCHH---HHHHHHHHH---h--CCC----ccHHHHHHHHHHHHcCCCHHHHH
Confidence 46666 543 46665554 7776 466666543 0 111 12367788999999999999999
Q ss_pred HHHHHHHHHhhhc-hHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhc
Q 014196 91 MAAKEIEKLAKED-VKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLA 142 (429)
Q Consensus 91 ~Aa~~L~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa 142 (429)
.|+..|-.+.+.. ......+.....+..|+.++.. .++.+++.++..+...+
T Consensus 64 ~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 64 YALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 9999999888754 3356677777777888888864 56889999988888775
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=81.43 E-value=40 Score=32.54 Aligned_cols=135 Identities=17% Similarity=0.150 Sum_probs=85.0
Q ss_pred cCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHhccCCCchHHHHH-hcCccchhhhhccCCCHHHHHHHHHHH
Q 014196 113 LGVIQMLVSMVST-----------EVIGRRRAAIKALIQLANGTYTNKAIMV-EAGILTKLPKNVDAVDESTRHEFGELL 180 (429)
Q Consensus 113 ~G~i~~Lv~lL~s-----------~~~~~~~~A~~aL~nLa~~~~~nk~~iv-~~G~i~~Lv~lL~~~~~~~~~~aa~~L 180 (429)
.||+..|+.+|.. .+...+..++.+|..|.... .....+. ..+++..|+..+.+....++..+..+|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~-~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL 124 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSH-HHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCH-HHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 6788888888752 14567788888888887664 3455555 457888888888877788888888788
Q ss_pred HHhhccCC--C-cccc----------ccCCcHHHHHHhhhcCCcHHHHHHHHHHHHH-hccCCCC-------hhHHHhcC
Q 014196 181 LSLSSLAN--T-HIPL----------SSSEILPFLVGILESGSSVETKELCIGALYN-LSAVLDN-------ARPMVSNG 239 (429)
Q Consensus 181 ~~Ls~~~~--~-~~~i----------~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n-Ls~~~~n-------~~~iv~~G 239 (429)
..+|..+. . ...+ .+..-...||..+.+++..+.+. ++..+.| |...+++ +..+...|
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~-a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G 203 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEELDFRVHIRSELMRLG 203 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 88886653 2 2222 13345567888887655545655 4444555 4444544 23445556
Q ss_pred cHHHHHHhccC
Q 014196 240 VVHTLLKLCSM 250 (429)
Q Consensus 240 ~v~~Lv~lL~~ 250 (429)
..+. +.-|+.
T Consensus 204 L~~i-l~~Lr~ 213 (386)
T 2bnx_A 204 LHQV-LQELRE 213 (386)
T ss_dssp HHHH-HHHHTT
T ss_pred hHHH-HHHHhc
Confidence 5544 455554
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=80.95 E-value=38 Score=32.03 Aligned_cols=202 Identities=14% Similarity=0.107 Sum_probs=136.2
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccc-----cCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLS-----SSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~-----~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
+.+...+.+..|+..|...+-+.|..++.+..++-... +.+.... ....+..|+.--.+.+ +--.+-..|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~d---iAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE---IALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT---THHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccch---hHhHHHHHHH
Confidence 45666788888999999999999999988877776433 2222111 1222233332222222 2333444555
Q ss_pred HhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHh-hCChhcHHHHhcC--CCChHHHHHhcccCCChhHHH
Q 014196 224 NLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNL-VVTSTGKKAMEDS--PLVPESLIEILTWEEKPKCQE 299 (429)
Q Consensus 224 nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~L-a~~~e~~~~i~~~--~~i~~~Lv~~L~~~~s~~~~e 299 (429)
....+..-...+...+.+-.+.+.+..+. ++...|..++..| ..+......+... ..+....-++|. +++-..+.
T Consensus 149 ecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~-S~NYVTkR 227 (341)
T 1upk_A 149 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH-SENYVTKR 227 (341)
T ss_dssp HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT-CSSHHHHH
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhc-CCcchhHH
Confidence 55566666677888888888888888777 8999999999854 4455444444332 233335666777 78999999
Q ss_pred HHHHHHHHHhhC--CHHHHHHHHhC-CchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Q 014196 300 LSAYILMILAHQ--SSEQRDKMAKS-GIVHVSLQLALLGSPLAQRRASKLLQWFKDERQ 355 (429)
Q Consensus 300 ~A~~~L~~L~~~--~~~~~~~i~~~-G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 355 (429)
.++..|+.+--. +......-+.. .-+..++.+|++.+..+|-.|-.+.+.+-..|+
T Consensus 228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence 999999988653 34444444443 356777888899999999999999999998664
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=80.72 E-value=7.8 Score=35.58 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHH
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
...+|.++..+..+...++..+-..++.+..-.+. ..+.+.++.-+++.+..+++.++..+..+-......
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-- 201 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS-- 201 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--
Confidence 56789999999887777777666666666542211 224667888889999999999998888874332111
Q ss_pred HHHhcCcc---chhhhhccCCCHHHHHHHHHHHHHhh
Q 014196 151 IMVEAGIL---TKLPKNVDAVDESTRHEFGELLLSLS 184 (429)
Q Consensus 151 ~iv~~G~i---~~Lv~lL~~~~~~~~~~aa~~L~~Ls 184 (429)
...++ |.+..++...+..+|..|..++..+-
T Consensus 202 ---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 202 ---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp ---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred ---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 24578 88999999999999988877766554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 429 | ||||
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-10 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 0.001 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 0.004 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-07 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-05 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 4e-04 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 5e-04 |
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 5e-10
Identities = 46/351 (13%), Positives = 97/351 (27%), Gaps = 15/351 (4%)
Query: 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRA 133
+ K+V+ L + + + A I+ +D K+ + +LG I LV ++ + ++A
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 134 AIKALIQLANGTYTNKAIMVEAGILTKLPK-NVDAVDESTRHEFGELLLSLSSLANTHIP 192
A AL L + TNK + + + + + LL +LSS
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 193 LSSSEILPFLVGILESGSSV--------------ETKELCIGALYNLSAVLDNARPMVSN 238
L + + ++ S E G L NLS+ + M +
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 239 GVVHTLLKLCSMKERLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQ 298
+ L + + + + VP ++ +
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243
Query: 299 ELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKM 358
+ S + + L A R L+ K + +
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303
Query: 359 GPHSGPQTRRVSIGSPVSPREAQEGKKMMKNLVQQSLHKNLEMITRRANAA 409
+ + K+ + + L + R +
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASL 354
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.7 bits (88), Expect = 0.001
Identities = 27/254 (10%), Positives = 82/254 (32%), Gaps = 19/254 (7%)
Query: 30 QNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEK 89
QN + ++++N C + + + + K +
Sbjct: 195 QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKS 254
Query: 90 EMAAKE----IEKLAKEDVKIKKLMAELGVIQMLVSMV------STEVIGRRRAAIKALI 139
+ + + K + I+ ++++ +T
Sbjct: 255 DKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314
Query: 140 QLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEIL 199
+ + ++ I ++ L ++ + + + + LL ++S H + + ++
Sbjct: 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVF 373
Query: 200 PFLVGILESG-----SSVETKELCIGALYNLSAV-LDNARPMVSNGVVHTLLKLCSMK-- 251
P + +L S +S + + NL A A+ S+ +++ ++ LC
Sbjct: 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSAS 433
Query: 252 ERLSEKSLATLGNL 265
+ +E + L ++
Sbjct: 434 PKAAEAARLLLSDM 447
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.004
Identities = 14/127 (11%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 107 KKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGI------LTK 160
+ + + + + ++ + R+ L ++ +M LT
Sbjct: 324 QLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LLHRVMGNQVFPEVTRLLTS 382
Query: 161 LPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIG 220
N ++ + ++S SS +L ++ + S +S + E
Sbjct: 383 HTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL 442
Query: 221 ALYNLSA 227
L ++ +
Sbjct: 443 LLSDMWS 449
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.0 bits (125), Expect = 4e-08
Identities = 39/215 (18%), Positives = 90/215 (41%), Gaps = 6/215 (2%)
Query: 137 ALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIPLSS 195
A++ L N Y + A + + +L K ++ D+ ++ ++ LS A+ H + S
Sbjct: 1 AVVNLIN--YQDDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 196 SEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLK-LCSMKERL 254
+++ +V +++ + VET G L+NLS + + +G + L+K L S + +
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117
Query: 255 SEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSE 314
++ TL NL++ G K + ++ +L + + + LA+ + E
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI-LAYGNQE 176
Query: 315 QRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQW 349
+ + SG + + + + +
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 5e-07
Identities = 35/232 (15%), Positives = 63/232 (27%), Gaps = 22/232 (9%)
Query: 35 HNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAK 94
+ + + + E + L VK LH S A
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377
Query: 95 EIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVE 154
+ + + E G I LV ++ +R Q +VE
Sbjct: 378 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 437
Query: 155 AGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVET 214
L L+ + I + +P V +L S
Sbjct: 438 GCTGA--------------------LHILARDVHNRIVIRGLNTIPLFVQLLYSPIE-NI 476
Query: 215 KELCIGALYNLSAVLDNARPMVSNGVVHTLLKLC-SMKERLSEKSLATLGNL 265
+ + G L L+ + A + + G L +L S E ++ + A L +
Sbjct: 477 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 2e-05
Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
Query: 78 VKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMV-STEVIGRRRAAIK 136
K L+ AA + +L+K++ +M ++ +V + +T + R
Sbjct: 23 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAG 82
Query: 137 ALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHE 175
L L++ + ++G + L K + + +S
Sbjct: 83 TLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFY 120
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 44/374 (11%), Positives = 110/374 (29%), Gaps = 5/374 (1%)
Query: 29 RQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEE 88
R+ + + K R + E L + ++L+ +E
Sbjct: 33 RKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQE 92
Query: 89 KEMAAKEIEK-LAKEDVKIKKLMAELGVIQMLVSMVSTEVIGR-RRAAIKALIQLANGTY 146
+ A + + L++E ++ + GV+ LV + + A AL +A+GT
Sbjct: 93 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 152
Query: 147 TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGIL 206
++V+A + + + + + L +++ + + + L
Sbjct: 153 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 212
Query: 207 ESGSSVETKELCIGALYNLSAVLDN-ARPMVSNGVVHTLLKLCSMKERLSEKSLATLGNL 265
+ + L NL V + + TL KL + + +
Sbjct: 213 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY 272
Query: 266 VVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIV 325
+ + + + L E Q + + + + Q + +G++
Sbjct: 273 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 332
Query: 326 HVSLQLALLGSPLAQRRASKLLQWF--KDERQAKMGPHSGPQTRRVSIGSPVSPREAQEG 383
L ++ A + + Q + + V + + +E
Sbjct: 333 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 392
Query: 384 KKMMKNLVQQSLHK 397
+ N L +
Sbjct: 393 CWAISNASSGGLQR 406
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 30/181 (16%), Positives = 61/181 (33%), Gaps = 4/181 (2%)
Query: 74 LQKSVKRLHFGSWEEKEMAAKEIEKLA-KEDVKIKKLMAELGVIQMLVSMVS-TEVIGRR 131
++ VK ++ + E + A + KL +E + G+I VS + T+ +
Sbjct: 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74
Query: 132 RAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHE--FGELLLSLSSLANT 189
+ AL +A+GT +V+ G + + + + + ++ A
Sbjct: 75 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134
Query: 190 HIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS 249
+ + I P L + S + LS + N P V +L
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194
Query: 250 M 250
Sbjct: 195 R 195
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.1 bits (92), Expect = 5e-04
Identities = 32/274 (11%), Positives = 100/274 (36%), Gaps = 8/274 (2%)
Query: 91 MAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKA 150
MA ++ ++D +E V++M++ ++ + + A+K L L + +
Sbjct: 22 MATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 81
Query: 151 IMVEAGILTKLPKNVDAVDESTRHEFGELL--LSLSSLANTHIPLSSSEILPFLVGILES 208
+ + T + + + + + + ++ L +S + +I L +
Sbjct: 82 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK 141
Query: 209 GSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLK-LCSMKERLSEKSLATLGNLVV 267
V + + + ++ + ++ LL L S + + ++++ LG+LV+
Sbjct: 142 QEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM 201
Query: 268 TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHV 327
+ L+ L+ L+ + + ++ Q+ + + + I+ +
Sbjct: 202 SCGNIVF---VDLIEH-LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEK-IIPL 256
Query: 328 SLQLALLGSPLAQRRASKLLQWFKDERQAKMGPH 361
++ + + + + F ++ PH
Sbjct: 257 VVKFCNVDDDELREYCIQAFESFVRRCPKEVYPH 290
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 429 | |||
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.93 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.93 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.93 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.92 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.92 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.91 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.82 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.78 | |
| d1wgma_ | 98 | Ubiquitin conjugation factor E4A {Human (Homo sapi | 98.72 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.67 | |
| d1t1ha_ | 78 | E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi | 98.63 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.6 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.58 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.56 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 98.46 | |
| d2c2la2 | 80 | STIP1 homology and U box-containing protein 1, STU | 98.34 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.25 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.09 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.04 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.01 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.96 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.95 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.92 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.7 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.68 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.63 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.6 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.39 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.23 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.07 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.02 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.91 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 96.85 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 96.78 | |
| d2baya1 | 56 | Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac | 96.35 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 95.55 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 91.57 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 90.38 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 90.19 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 88.14 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 86.74 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 86.38 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 85.7 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 83.35 | |
| d1rmda2 | 86 | V(D)J recombination activating protein 1 (RAG1), d | 82.89 | |
| d1jm7b_ | 97 | bard1 RING domain {Human (Homo sapiens) [TaxId: 96 | 82.67 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3e-25 Score=227.03 Aligned_cols=277 Identities=18% Similarity=0.102 Sum_probs=242.2
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHF-GSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~-~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.++.+++.|.. ++.+.+..|+..|..++. +++++..+++.|++|+|+.+|+++++++++.|+++|.||+.+++..+
T Consensus 58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 136 (529)
T d1jdha_ 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh
Confidence 4568999999975 478899999999999996 66889999999999999999999999999999999999999986678
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAV 228 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 228 (429)
..+.+.|+||+|+.++++.+.+.+..++.+|.+++..+ +.+..+...|+++.|+.++...+....+..++.++.|++.+
T Consensus 137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~ 216 (529)
T d1jdha_ 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence 88889999999999999999999999999999999765 45566678999999999998877657888999999999999
Q ss_pred CCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHH
Q 014196 229 LDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMI 307 (429)
Q Consensus 229 ~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~ 307 (429)
++++..+++.|++++|+.++.+.+ .+...++.+|.+++...... ....|++ +.|++++. ++++..++.|+.+|++
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~--~~~~~~i-~~Lv~ll~-~~~~~~~~~a~~~L~~ 292 (529)
T d1jdha_ 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLL-GTLVQLLG-SDDINVVTCAAGILSN 292 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHH-HHHHHHTT-CSCHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch--hhhhhcc-hhhhhhcc-cccHHHHHHHHHHHHh
Confidence 999999999999999999998776 88999999999998643322 2222344 58999998 7889999999999999
Q ss_pred HhhCCHHHHHHHHhCCchHHHHHHhhc--CCHHHHHHHHHHHHHHHh
Q 014196 308 LAHQSSEQRDKMAKSGIVHVSLQLALL--GSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 308 L~~~~~~~~~~i~~~G~v~~L~~ll~~--~~~~~k~~A~~lL~~l~~ 352 (429)
++..+++.+..+.+.|+++.|+.++.. +.+..++.|.+.|+++..
T Consensus 293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~ 339 (529)
T d1jdha_ 293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence 999889999999999999999998864 567889999999998874
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.3e-24 Score=221.10 Aligned_cols=280 Identities=14% Similarity=0.134 Sum_probs=246.9
Q ss_pred hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch
Q 014196 70 DCVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 70 ~~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
+.+.++.|+..|+.. +...+..|++.|.+++..++.....+.+.|+++.|+.+|.+++.++++.|+++|.||+.+++.+
T Consensus 117 ~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~ 196 (503)
T d1wa5b_ 117 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 196 (503)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHH
Confidence 345689999999865 6789999999999999888888889999999999999999999999999999999999987678
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccc-cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP-LSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
+..+.+.|++++|+.++.....+.++.++++|.+++........ ....+++|.|+.++.+.+. +.+..++++|.+|+.
T Consensus 197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~-~~~~~~~~~l~~l~~ 275 (503)
T d1wa5b_ 197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT-ETLVDACWAISYLSD 275 (503)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCH-HHHHHHHHHHHHHHS
T ss_pred HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHhhcc
Confidence 99999999999999999998889999999999999976544333 3357899999999999887 789999999999998
Q ss_pred CCCC-hhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 228 VLDN-ARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 228 ~~~n-~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
...+ ...+++.|+++.++.++...+ .+...++.+|.+++.. ++....+.+.|.+ +.|..++. +.++..++.++++
T Consensus 276 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l-~~l~~ll~-~~~~~i~~~~~~~ 353 (503)
T d1wa5b_ 276 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL-PALRLLLS-SPKENIKKEACWT 353 (503)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH-HHHHHHTT-CSCHHHHHHHHHH
T ss_pred CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchH-HHHHHHhc-CCCHHHHHHHHHH
Confidence 6655 477899999999999998775 8899999999999985 4455566676655 58999998 7888999999999
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
|.+++.+++.....+++.|+++.++.++..++.+++..|+|+|.++..
T Consensus 354 l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~ 401 (503)
T d1wa5b_ 354 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 401 (503)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence 999999889999999999999999999999999999999999988875
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=2.2e-24 Score=213.79 Aligned_cols=319 Identities=18% Similarity=0.194 Sum_probs=258.6
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchH
Q 014196 71 CVLLQKSVKRLHFG-SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 71 ~~~l~~lv~~L~~~-~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
.+.++.|++.|++. +++.|..|++.|.+++..+++.+..+++.|++|.|+.+|.+++.++++.|+++|.|++.+++..+
T Consensus 55 ~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~ 134 (434)
T d1q1sc_ 55 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134 (434)
T ss_dssp TTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHH
Confidence 45689999999754 67889999999999999888899999999999999999999999999999999999999876678
Q ss_pred HHHHhcCccchhhhhccCCC-----HHHHHHHHHHHHHhhccCCCcccc-ccCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 150 AIMVEAGILTKLPKNVDAVD-----ESTRHEFGELLLSLSSLANTHIPL-SSSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~-----~~~~~~aa~~L~~Ls~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
..+.+.|+++.|+.++.... ......++..+.+++........+ ...+++|.|+.++.+++. +++..++++|.
T Consensus 135 ~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~~~~~a~~~l~ 213 (434)
T d1q1sc_ 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP-EVLADSCWAIS 213 (434)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcccc-chhhhHHhhhc
Confidence 88999999999999997654 234456677788887655433333 356789999999999887 78999999999
Q ss_pred HhccCCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHH
Q 014196 224 NLSAVLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQEL 300 (429)
Q Consensus 224 nLs~~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~ 300 (429)
+|+.++... ..+.+.|+++.|+.++.+.+ .++..++.+|.+++. +++.+..+.+.|++. .|++++. +.++..++.
T Consensus 214 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~-~l~~ll~-~~~~~v~~~ 291 (434)
T d1q1sc_ 214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA-VFPSLLT-NPKTNIQKE 291 (434)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG-GHHHHTT-CSSHHHHHH
T ss_pred ccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccc-hHHHhhc-ccchhhhHH
Confidence 999876544 66778899999999998775 899999999999988 566778888878775 8999998 788899999
Q ss_pred HHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--c-c-CCCCCCCCCcccc-ccCCCC
Q 014196 301 SAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER--Q-A-KMGPHSGPQTRRV-SIGSPV 375 (429)
Q Consensus 301 A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~--~-~-~~~~~~~~~~~~~-~~~~~~ 375 (429)
|+++|.+++..+++....+.+.|+++.++.++.+++..++..|+|+|.++.... + . .... .+ ...-+ ......
T Consensus 292 a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~-~~-~i~~L~~ll~~~ 369 (434)
T d1q1sc_ 292 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH-CG-IIEPLMNLLSAK 369 (434)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-TT-CHHHHHHHTTSS
T ss_pred HHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHH-CC-cHHHHHHHhcCC
Confidence 999999999988889999999999999999999999999999999999887532 1 0 0000 00 01111 222333
Q ss_pred ChhhhHHHHHHHHHHHHHH
Q 014196 376 SPREAQEGKKMMKNLVQQS 394 (429)
Q Consensus 376 ~~~~~~~~k~~l~~~~~~~ 394 (429)
+.+....+=+++.+|++.+
T Consensus 370 d~~~~~~~l~~l~~ll~~~ 388 (434)
T d1q1sc_ 370 DTKIIQVILDAISNIFQAA 388 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 5666777777888887643
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.9e-24 Score=209.77 Aligned_cols=280 Identities=19% Similarity=0.179 Sum_probs=226.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
||.||+.|.++++++|..|+..|.+++.+++++|..+.+.|+||+|+.+|+++++++++.|+++|.||+.++++++..+.
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~ 83 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999999999999999999998889999999999999999999999999999999999999988777899999
Q ss_pred hcCccchhhhhccC-CCHHHHHHHHHHHHHhhccCCCc------------------------------------------
Q 014196 154 EAGILTKLPKNVDA-VDESTRHEFGELLLSLSSLANTH------------------------------------------ 190 (429)
Q Consensus 154 ~~G~i~~Lv~lL~~-~~~~~~~~aa~~L~~Ls~~~~~~------------------------------------------ 190 (429)
+.|+++.|+.++.. .+.+.+..++.+|.+++..+..+
T Consensus 84 ~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a 163 (457)
T d1xm9a1 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA 163 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHH
T ss_pred HCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHH
Confidence 99999999998864 44667777777777776533211
Q ss_pred --------------cc-cccCCcHHHHHHhhhc-----------------------------------------------
Q 014196 191 --------------IP-LSSSEILPFLVGILES----------------------------------------------- 208 (429)
Q Consensus 191 --------------~~-i~~~g~i~~Lv~lL~~----------------------------------------------- 208 (429)
.. +...|+++.|+.++.+
T Consensus 164 ~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (457)
T d1xm9a1 164 TGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243 (457)
T ss_dssp HHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------
T ss_pred HHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhH
Confidence 00 1134666776665531
Q ss_pred ---------------------------------------------------CCcHHHHHHHHHHHHHhccCCCC------
Q 014196 209 ---------------------------------------------------GSSVETKELCIGALYNLSAVLDN------ 231 (429)
Q Consensus 209 ---------------------------------------------------~~~~~~~~~A~~aL~nLs~~~~n------ 231 (429)
......+..+..++.+++.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 323 (457)
T d1xm9a1 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS 323 (457)
T ss_dssp ----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHH
T ss_pred HHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHH
Confidence 11113445667777777765432
Q ss_pred hhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccC-----CChhHHHHHHHHH
Q 014196 232 ARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWE-----EKPKCQELSAYIL 305 (429)
Q Consensus 232 ~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~-----~s~~~~e~A~~~L 305 (429)
+..+.+.|+++.|+.++.+.+ .+++.++.+|.+|+.+++++..+.+ ++++ .|+++|... .++..++.|+++|
T Consensus 324 ~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~-~li~~L~~~~~~~~~~~~v~~~a~~~L 401 (457)
T d1xm9a1 324 QLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFP-EVTRLLTSHTGNTSNSEDILSSACYTV 401 (457)
T ss_dssp HHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHH-HHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHH-HHHHHHhccccCcCCcHHHHHHHHHHH
Confidence 344566899999999998776 8999999999999999999998876 5564 899988621 2346788999999
Q ss_pred HHHhhCCHHHHHHHHhCCchHHHHHHhhc-CCHHHHHHHHHHHHHHHhccc
Q 014196 306 MILAHQSSEQRDKMAKSGIVHVSLQLALL-GSPLAQRRASKLLQWFKDERQ 355 (429)
Q Consensus 306 ~~L~~~~~~~~~~i~~~G~v~~L~~ll~~-~~~~~k~~A~~lL~~l~~~~~ 355 (429)
.+++..+++.++.+.+.|+++.|+.++.+ +++.+++.|+.+|..|..+++
T Consensus 402 ~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~ 452 (457)
T d1xm9a1 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence 99998888999999999999999999987 578999999999999976554
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=1.4e-23 Score=208.03 Aligned_cols=327 Identities=14% Similarity=0.098 Sum_probs=259.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchH-HHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchH
Q 014196 72 VLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVK-IKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNK 149 (429)
Q Consensus 72 ~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk 149 (429)
..+..+|+.|.+++++.+..|+..++++...+.. ....+.+.|++|+|+++|.+ +++++|..|+++|.+++.+++.++
T Consensus 13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~ 92 (434)
T d1q1sc_ 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 92 (434)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence 3489999999999999999999999988653322 35788999999999999975 568899999999999998876678
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCc----HHHHHHHHHHHHH
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSS----VETKELCIGALYN 224 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~~A~~aL~n 224 (429)
..+++.|++|.|+.++++.+.+.++.++.+|.+++... ..+..+.+.|+++.|+.++...+. ......++.++.+
T Consensus 93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 172 (434)
T d1q1sc_ 93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 172 (434)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999765 456667789999999999987543 1345667888999
Q ss_pred hccCCCCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChh-cHHHHhcCCCChHHHHHhcccCCChhHHHHH
Q 014196 225 LSAVLDNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTST-GKKAMEDSPLVPESLIEILTWEEKPKCQELS 301 (429)
Q Consensus 225 Ls~~~~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e-~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A 301 (429)
++...... ......++++.++.++.+.+ +++..++.+|.+++.++. ....+...| +.+.|++++. ++++..+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~~~Lv~ll~-~~~~~~~~~a 250 (434)
T d1q1sc_ 173 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG-VVPQLVKLLG-ATELPIVTPA 250 (434)
T ss_dssp HTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT-CHHHHHHHHT-CSCHHHHHHH
T ss_pred HhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcc-cchhcccccc-cchhhhhhch
Confidence 98865544 44456789999999998765 889999999999998654 445555544 4569999998 7889999999
Q ss_pred HHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc-cC-C-CCCCCCCcccc-ccCCCCCh
Q 014196 302 AYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQ-AK-M-GPHSGPQTRRV-SIGSPVSP 377 (429)
Q Consensus 302 ~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~-~~-~-~~~~~~~~~~~-~~~~~~~~ 377 (429)
+.+|.+++..+++.+..+++.|+++.|+.++.+.++.+++.|.++|.++....+ .+ . ..+ + ....+ .....++.
T Consensus 251 l~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~-~i~~li~~l~~~~~ 328 (434)
T d1q1sc_ 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH-G-LVPFLVGVLSKADF 328 (434)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-T-CHHHHHHHHHSSCH
T ss_pred hhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhh-h-hHHHHHHHHhccCh
Confidence 999999999888899999999999999999999999999999999999986432 10 0 000 0 01111 22223356
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHH
Q 014196 378 REAQEGKKMMKNLVQQSLHKNLEMI 402 (429)
Q Consensus 378 ~~~~~~k~~l~~~~~~~~~~~~~~~ 402 (429)
+.+..+-.++.++++.+.......+
T Consensus 329 ~v~~~a~~~l~nl~~~~~~~~~~~l 353 (434)
T d1q1sc_ 329 KTQKEAAWAITNYTSGGTVEQIVYL 353 (434)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 7888888899888876544443333
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9e-25 Score=223.42 Aligned_cols=274 Identities=15% Similarity=0.105 Sum_probs=237.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHH-hcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCch
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMA-ELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTN 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~-~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~n 148 (429)
...+|.|++.|.+++...+..|+..+..+++++. .|..++ ..|+++.|+.+|.. .++++++.|+.+|.+|+.++ ++
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~-~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~-~~ 93 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR-EG 93 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH-HH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccH-HHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hh
Confidence 4569999999999999999999999999998664 455555 46789999999975 67899999999999999876 68
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC-CccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN-THIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
+..+++.|++|.|+.+|.+++.+.+..++.+|.+|+...+ .+..+.+.|+||.|+.+|.+++. +++..++.+|.+++.
T Consensus 94 ~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~l~~ 172 (529)
T d1jdha_ 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccCh-HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998765 45567789999999999999887 799999999999997
Q ss_pred CC-CChhHHHhcCcHHHHHHhccCCc--chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 228 VL-DNARPMVSNGVVHTLLKLCSMKE--RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 228 ~~-~n~~~iv~~G~v~~Lv~lL~~~~--~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
.. +++..+++.|++++|+.++...+ .+.+.++.+|.+++.+++.+..+.+.|++. .|+.++. +++...+++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~-~L~~ll~-~~~~~~~~~a~~~ 250 (529)
T d1jdha_ 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHLT-DPSQRLVQNCLWT 250 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHH-HHHTTTT-SSCHHHHHHHHHH
T ss_pred hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhh-hHHHHhc-ccchhhhhhhhhH
Confidence 54 45577888999999999997553 788899999999999999999999988875 8999998 7889999999999
Q ss_pred HHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 305 LMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
|.+++.... ......|+++.|+.++.++++.++..|+++|.++..
T Consensus 251 l~~ls~~~~---~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~ 295 (529)
T d1jdha_ 251 LRNLSDAAT---KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp HHHHHTTCT---TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHhcccccc---chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence 999875432 122234789999999999999999999999999874
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=4.4e-23 Score=209.54 Aligned_cols=277 Identities=14% Similarity=0.098 Sum_probs=242.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhh-hchHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCchHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAK-EDVKIKKLMAELGVIQMLVSMVST-EVIGRRRAAIKALIQLANGTYTNKA 150 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~-~~~~~r~~i~~~G~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~nk~ 150 (429)
.++.+++.+.+++.+.+..|+..++.+.. ........+.+.|++|.|+.+|.. .+..++..|+++|.||+.+++....
T Consensus 77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~ 156 (503)
T d1wa5b_ 77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 156 (503)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 48899999999999999999999998763 333456789999999999999986 4688999999999999988755677
Q ss_pred HHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC
Q 014196 151 IMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL 229 (429)
Q Consensus 151 ~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 229 (429)
.+.+.|+++.++.++++.+.+.++.++++|.+|+... .++..+...|+++.|+.++.+.+. .+++.++++|.|++.+.
T Consensus 157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~-~~~~~~~~~l~nl~~~~ 235 (503)
T d1wa5b_ 157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGK 235 (503)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCH-HHHHHHHHHHHHHHCCS
T ss_pred HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCH-HHHHHHHHHHHHHhcCC
Confidence 7889999999999999999999999999999999764 567778899999999999998887 78899999999999876
Q ss_pred CCh-hHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHH
Q 014196 230 DNA-RPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILM 306 (429)
Q Consensus 230 ~n~-~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~ 306 (429)
.+. ......|++|.++.++...+ ++...++.+|.+++. .++....+.+.|.+ +.++.++. ++++..+..|+.+|.
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~l~~ll~-~~~~~v~~~al~~l~ 313 (503)
T d1wa5b_ 236 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP-KRLVELLS-HESTLVQTPALRAVG 313 (503)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCH-HHHHHGGG-CSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhh-hhhhhccc-CCchhhhhhHHHHHH
Confidence 554 44566799999999998776 889999999999997 56667788886665 58999998 789999999999999
Q ss_pred HHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 307 ILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 307 ~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
+++.++......+.+.|+++.|..++.++++.+++.++|+|.++..
T Consensus 314 nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~ 359 (503)
T d1wa5b_ 314 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 359 (503)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 9999888888899999999999999999999999999999998875
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.1e-19 Score=166.46 Aligned_cols=192 Identities=17% Similarity=0.186 Sum_probs=167.9
Q ss_pred CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhh
Q 014196 85 SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVS-MVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPK 163 (429)
Q Consensus 85 ~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~-lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~ 163 (429)
+.+.+..|+..|..++. +.+++..+...|++++|+. +|.+++++++..|+++|.+++.+++.++..+++.|++|.|+.
T Consensus 30 ~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~ 108 (264)
T d1xqra1 30 DQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 108 (264)
T ss_dssp HHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 56778889999999995 6689999999999999985 788999999999999999999988667888999999999999
Q ss_pred hccC-CCHHHHHHHHHHHHHhhccC-CCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc-CCCChhHHHhcCc
Q 014196 164 NVDA-VDESTRHEFGELLLSLSSLA-NTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA-VLDNARPMVSNGV 240 (429)
Q Consensus 164 lL~~-~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~-~~~n~~~iv~~G~ 240 (429)
++.+ .+.+.+..++.+|.+++... .++..+...|+++.|++++.+++. .++..++.+|.||+. .++++..+++.|+
T Consensus 109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 187 (264)
T d1xqra1 109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ-KLKVKSAFLLQNLLVGHPEHKGTLCSMGM 187 (264)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCch-HHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence 9964 56788999999999999665 456677789999999999999987 799999999999986 5678899999999
Q ss_pred HHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHhcC
Q 014196 241 VHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAMEDS 278 (429)
Q Consensus 241 v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~~~ 278 (429)
+|.|+.+|.+++ .+++.++.+|.+|+. +++.+..+...
T Consensus 188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~ 227 (264)
T d1xqra1 188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP 227 (264)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 999999998776 899999999999998 56666666543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=9.7e-19 Score=170.79 Aligned_cols=240 Identities=15% Similarity=0.107 Sum_probs=190.9
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhcc-CCCccc
Q 014196 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSL-ANTHIP 192 (429)
Q Consensus 114 G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~-~~~~~~ 192 (429)
+.||.||.+|+++|+++|..|+++|.||+.+++++|..|++.|+||+|+.+|++.+.+.+..|+.+|.+|+.. ++++..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4699999999999999999999999999998878999999999999999999999999999999999999954 467788
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhcc---------------C-Cc-chH
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCS---------------M-KE-RLS 255 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~---------------~-~~-~~~ 255 (429)
+.+.|+++.|+.++.+.....++..|+++|.+++....+.......|. +.++..+. + .+ .++
T Consensus 82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence 889999999999998765557899999999999998888777766554 44444331 1 12 678
Q ss_pred HHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcc---------------------------------------------
Q 014196 256 EKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILT--------------------------------------------- 290 (429)
Q Consensus 256 ~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~--------------------------------------------- 290 (429)
+.++.+|.+++.+++.+..+...+|+++.|++++.
T Consensus 161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T d1xm9a1 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence 88899999988888877777665555555655432
Q ss_pred -----------------------------------------------------cCCChhHHHHHHHHHHHHhhCC----H
Q 014196 291 -----------------------------------------------------WEEKPKCQELSAYILMILAHQS----S 313 (429)
Q Consensus 291 -----------------------------------------------------~~~s~~~~e~A~~~L~~L~~~~----~ 313 (429)
...++..++.+..++..++... .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 320 (457)
T d1xm9a1 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence 0112233456667777766532 1
Q ss_pred -HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Q 014196 314 -EQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDER 354 (429)
Q Consensus 314 -~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~ 354 (429)
..+..+.+.|+++.|+.++.++++.++..|+++|.++..++
T Consensus 321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~ 362 (457)
T d1xm9a1 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence 23455666899999999999999999999999999998755
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.1e-18 Score=162.55 Aligned_cols=199 Identities=16% Similarity=0.114 Sum_probs=170.7
Q ss_pred hhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhh-hccCCCHHHHHHHHHHHHHhhccC-CCccccccCCcH
Q 014196 122 MVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPK-NVDAVDESTRHEFGELLLSLSSLA-NTHIPLSSSEIL 199 (429)
Q Consensus 122 lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~-lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~i~~~g~i 199 (429)
+..+.|.+.++.|+.+|.+|+.+. +|+..+++.|++++++. ++++.+.+++..|+.+|.+++.+. ..+..+.+.|++
T Consensus 25 ~~~~~~~~~~~~Al~~L~~L~~~~-d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i 103 (264)
T d1xqra1 25 AEQAADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGAL 103 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 334556788999999999999775 68999999999999875 778888999999999999999754 566677789999
Q ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHhccCCC-ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC-ChhcHHHHh
Q 014196 200 PFLVGILESGSSVETKELCIGALYNLSAVLD-NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV-TSTGKKAME 276 (429)
Q Consensus 200 ~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~-n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~-~~e~~~~i~ 276 (429)
|.|+++|.++....++..|+.+|.+++.+.. +...+.+.|+++.|+.+|.+.+ .++.+++.+|.+++. +++.+..+.
T Consensus 104 ~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 183 (264)
T d1xqra1 104 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 183 (264)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999876555789999999999997654 5678899999999999998876 899999999999886 788999999
Q ss_pred cCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCC
Q 014196 277 DSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSG 323 (429)
Q Consensus 277 ~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G 323 (429)
+.|+++ .|+++|. ++++..++.|+.+|++|+..+++....+...+
T Consensus 184 ~~~~v~-~L~~lL~-~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~ 228 (264)
T d1xqra1 184 SMGMVQ-QLVALVR-TEHSPFHEHVLGALCSLVTDFPQGVRECREPE 228 (264)
T ss_dssp HTTHHH-HHHHHHT-SCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred HhhhHH-HHHHHHc-CCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 988775 8999998 78999999999999999988887777766543
|
| >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Ubiquitin conjugation factor E4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=1.6e-09 Score=84.04 Aligned_cols=54 Identities=15% Similarity=-0.008 Sum_probs=48.5
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhccc--cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKSA--RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~~--~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|..|+..--.|+|||| |++||..++. .|+++|...+|+||++||+.|+.|+...
T Consensus 32 m~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~ 89 (98)
T d1wgma_ 32 MCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp CSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred HHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhhcchHHHHHHHHHHHHHH
Confidence 6678877777799999 9999988766 9999999889999999999999999876
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.2e-06 Score=88.21 Aligned_cols=219 Identities=14% Similarity=0.131 Sum_probs=146.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc
Q 014196 115 VIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS 194 (429)
Q Consensus 115 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~ 194 (429)
.+++|..++..+++.+|+.|+.+|..++.... ... ++.-.+|.+..+..+.....|..++.++..+...... ..
T Consensus 88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~--~~~-~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~--~~- 161 (588)
T d1b3ua_ 88 LLPPLESLATVEETVVRDKAVESLRAISHEHS--PSD-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--AV- 161 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC--HHH-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--HH-
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCC--HHH-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH--HH-
Confidence 35666677777888888988888888876642 122 2333445444555544444555555555555432111 11
Q ss_pred cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhC--Chhc
Q 014196 195 SSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVV--TSTG 271 (429)
Q Consensus 195 ~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~--~~e~ 271 (429)
....++.+.+++.+.++ .+|+.++.++..++..-.. .......+|.+..++.|.+ .++..++.+|..++. .++.
T Consensus 162 ~~~l~~~~~~l~~D~~~-~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~ 238 (588)
T d1b3ua_ 162 KAELRQYFRNLCSDDTP-MVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238 (588)
T ss_dssp HHHHHHHHHHHHTCSCH-HHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH
Confidence 12346778888887776 7999999999999875332 2334567788888888875 778888888888765 2332
Q ss_pred HHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 014196 272 KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWF 350 (429)
Q Consensus 272 ~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l 350 (429)
.... +.+.+..++. +.+..++..++.+|..++.. +.+ .....++|.+..++.+.++.++..|...|..+
T Consensus 239 ~~~~-----i~~~l~~~~~-D~~~~Vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~ 308 (588)
T d1b3ua_ 239 LEAL-----VMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPE----ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308 (588)
T ss_dssp HHHH-----THHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHH----HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHhcc-cccHHHHHHHHHhHHHHHHHhhhh----hhhhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 2222 3457777777 78889999999999998752 222 23345789999999999999999999877665
Q ss_pred Hh
Q 014196 351 KD 352 (429)
Q Consensus 351 ~~ 352 (429)
..
T Consensus 309 ~~ 310 (588)
T d1b3ua_ 309 CE 310 (588)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: E3 ubiquitin ligase PUB14 species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.63 E-value=4.7e-09 Score=77.79 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=46.4
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhccc---cccCCCCCCCcccchhhHHHHHHHHHhhc
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKSA---RRRQNEPNHNHEKSRTLKNINCQEEKQVI 55 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~~---~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~ 55 (429)
|-.|++.- =|+||+| |++|++.++. .|++++...+++||++||++|++|+.+|+
T Consensus 18 m~dPV~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~ 76 (78)
T d1t1ha_ 18 MKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CSSEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred hhCceEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhC
Confidence 55677653 6799999 9999987643 89999998899999999999999999883
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.60 E-value=2.1e-06 Score=77.22 Aligned_cols=225 Identities=9% Similarity=-0.015 Sum_probs=153.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 74 LQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 74 l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
...|++.|.++++.++..|+..|..+.. ..+++.|+.+|+++|+.++..|+.+|..+.... .....+.
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~-~~~~~~~ 88 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-KCEDNVF 88 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-TTHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-ccccchH
Confidence 5678899999999999999999987753 134899999999999999999999999997654 2333322
Q ss_pred hcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChh
Q 014196 154 EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNAR 233 (429)
Q Consensus 154 ~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~ 233 (429)
. ..+..++...+..++..++.+|..+...... .....++.+...+.+.+. .++..++.++....
T Consensus 89 ~----~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~-~vr~~a~~~l~~~~------- 152 (276)
T d1oyza_ 89 N----ILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKST-NVRRATAFAISVIN------- 152 (276)
T ss_dssp H----HHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCH-HHHHHHHHHHHTC--------
T ss_pred H----HHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcch-HHHHHHHHHHhhcc-------
Confidence 2 1123346677788899999999988754321 122356777777777776 67777777776543
Q ss_pred HHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCC
Q 014196 234 PMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS 312 (429)
Q Consensus 234 ~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~ 312 (429)
+...++.++.++.+.. .....+...+..+..... ...+.++..+. +.+...+..+..++..+.
T Consensus 153 ---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~al~~~~--- 216 (276)
T d1oyza_ 153 ---DKATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQ-DKNEEVRIEAIIGLSYRK--- 216 (276)
T ss_dssp -----CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTT-CSCHHHHHHHHHHHHHTT---
T ss_pred ---hHHHHHHHHHhcccccchhhhhHHHHHHhhhcccc---------ccchhhhhhhh-hhhhhhhhhhccccchhh---
Confidence 2456778888887665 555555555555443211 11224566666 677777777777766542
Q ss_pred HHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 313 SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 313 ~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
...+++.|+..+.+. .++..|.+.|..+++
T Consensus 217 --------~~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~ 246 (276)
T d1oyza_ 217 --------DKRVLSVLCDELKKN--TVYDDIIEAAGELGD 246 (276)
T ss_dssp --------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC
T ss_pred --------hhhhHHHHHHHhCCh--HHHHHHHHHHHHcCC
Confidence 234688888888753 467788888887764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=5.3e-07 Score=90.96 Aligned_cols=301 Identities=12% Similarity=0.087 Sum_probs=194.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
.++.+.+.+.+.++.+|..|+..+..+++.-.. .......+|.|..++.+++..++..|+.+|..++...+ .. -
T Consensus 165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~-~~--~ 238 (588)
T d1b3ua_ 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP-QE--D 238 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC-HH--H
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCC-HH--H
Confidence 345555566677889999999999988864321 12234567888888888999999999999998875432 11 1
Q ss_pred HhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCC--C
Q 014196 153 VEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSAVL--D 230 (429)
Q Consensus 153 v~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~--~ 230 (429)
...-.+|.+..+++..+..+|..++.+|..+...-. ..+.....+|.+..++.+.+. +++..|+.+|..++..- .
T Consensus 239 ~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~-~vr~~a~~~l~~~~~~l~~~ 315 (588)
T d1b3ua_ 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEA-EVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSH-HHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhh
Confidence 122356777778887788889888888888864321 112234578999999998887 79999999999888642 2
Q ss_pred ChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 231 NARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 231 n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
......-...+|.+..++.+.. .++..++..+..++.. -+.....+ .+.+.+...+. +.++..+..++..+..++
T Consensus 316 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~-~~~~~~~~--~l~p~l~~~l~-d~~~~v~~~~~~~l~~~~ 391 (588)
T d1b3ua_ 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI-LGKDNTIE--HLLPLFLAQLK-DECPEVRLNIISNLDCVN 391 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHH-HCHHHHHH--HTHHHHHHHHT-CSCHHHHHHHHTTCHHHH
T ss_pred hhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhc-cchhHHHH--HHHHHHHHHHH-hhhhhhhhHHHHHHHHHH
Confidence 2333334567888888888775 6666666666555431 11222222 23457888887 678888888877777665
Q ss_pred hC-CH-HHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccc--ccCCCCChhhhHHHHH
Q 014196 310 HQ-SS-EQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDERQAKMGPHSGPQTRRV--SIGSPVSPREAQEGKK 385 (429)
Q Consensus 310 ~~-~~-~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~k~ 385 (429)
.. +. ... ...+|.+..++.+.+.+.+..+...+..+...-.... -.+..... ....+.....+..+-+
T Consensus 392 ~~~~~~~~~-----~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~D~~~~VR~~A~~ 463 (588)
T d1b3ua_ 392 EVIGIRQLS-----QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREAATS 463 (588)
T ss_dssp HHSCHHHHH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred hhcchhhhh-----hHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh---HHHHHHHHHHhhccCCchhHHHHHHH
Confidence 42 22 122 2357888888888888999988888877765311000 00111111 1222335666777777
Q ss_pred HHHHHHHHH
Q 014196 386 MMKNLVQQS 394 (429)
Q Consensus 386 ~l~~~~~~~ 394 (429)
+|..+++..
T Consensus 464 ~L~~l~~~~ 472 (588)
T d1b3ua_ 464 NLKKLVEKF 472 (588)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777654
|
| >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.34 E-value=4.8e-08 Score=72.53 Aligned_cols=53 Identities=13% Similarity=0.059 Sum_probs=45.4
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhccc---cccCCCCCCCcccchhhHHHHHHHHHhh
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKSA---RRRQNEPNHNHEKSRTLKNINCQEEKQV 54 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~~---~T~~~L~~~~L~PN~~Lr~lI~~W~~~~ 54 (429)
|-.|++. .=|+||+| |++|+..++. .+++++...++.||.+||++|++|+..|
T Consensus 17 ~~dPv~~-~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~ 74 (80)
T d2c2la2 17 MREPCIT-PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISEN 74 (80)
T ss_dssp CSSEEEC-SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTC
T ss_pred hhhhccc-CCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHC
Confidence 4567654 46899999 9999987643 8899998889999999999999999887
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=2.7e-05 Score=69.59 Aligned_cols=199 Identities=12% Similarity=0.013 Sum_probs=136.1
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccc
Q 014196 113 LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP 192 (429)
Q Consensus 113 ~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 192 (429)
....+.|+.+|+++|+.++..|+.+|..+.. ..+++.|+.++++.+..++..|+.+|..+.........
T Consensus 18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~ 86 (276)
T d1oyza_ 18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 86 (276)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc
Confidence 3457789999999999999999999987642 13468889999999999999999999888643332222
Q ss_pred cccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhc
Q 014196 193 LSSSEILPFLVGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTG 271 (429)
Q Consensus 193 i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~ 271 (429)
.++.|...+.++....++..|+.+|.+++...... ....++.+...+.|.. .++..++.++..+.
T Consensus 87 -----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~----- 152 (276)
T d1oyza_ 87 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIN----- 152 (276)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred -----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchh----hHHHHHHHHHHhcCcchHHHHHHHHHHhhcc-----
Confidence 34556665544433479999999999988654322 1245677888887765 56655655554422
Q ss_pred HHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 272 KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 272 ~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
. ....+.+..++. ..+...+..+..++..+...... .++.++..+...+..++..+.+.+..++
T Consensus 153 -----~-~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~~ 216 (276)
T d1oyza_ 153 -----D-KATIPLLINLLK-DPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYRK 216 (276)
T ss_dssp --------CCHHHHHHHHT-CSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -----h-HHHHHHHHHhcc-cccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchhh
Confidence 1 223347778777 56777777777777766554433 3445666677778888888888887765
Q ss_pred h
Q 014196 352 D 352 (429)
Q Consensus 352 ~ 352 (429)
+
T Consensus 217 ~ 217 (276)
T d1oyza_ 217 D 217 (276)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=9.3e-05 Score=70.43 Aligned_cols=272 Identities=12% Similarity=0.013 Sum_probs=162.2
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCCc
Q 014196 72 VLLQKSVKRLHFG--SWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE--VIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 72 ~~l~~lv~~L~~~--~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~ 147 (429)
..++.++..+.++ +...+..++..+..+..........-.-...++.++..+.++ +.+++..|+.++.++......
T Consensus 127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~ 206 (458)
T d1ibrb_ 127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 206 (458)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 3467777877754 455666677777766543221111111123467788888764 578999999999988765421
Q ss_pred h-HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC--CccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 014196 148 N-KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN--THIPLSSSEILPFLVGILESGSSVETKELCIGALYN 224 (429)
Q Consensus 148 n-k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~n 224 (429)
+ ..........+.+..+++..+.+.+..+..+|..+..... ....+ .....+.+...+.+.+. .++..|+..+..
T Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~-~~~~~a~~~l~~ 284 (458)
T d1ibrb_ 207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDID-EVALQGIEFWSN 284 (458)
T ss_dssp HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSH-HHHHHHHHHHHH
T ss_pred hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhccccH-HHHHHHHHHHHH
Confidence 1 1111222345556677777788888888888888764321 11111 22233444455555554 677788888877
Q ss_pred hccCC-----------------C----ChhHHHhcCcHHHHHHhccCC-------c-chHHHHHHHHHHhhCC-h-hcHH
Q 014196 225 LSAVL-----------------D----NARPMVSNGVVHTLLKLCSMK-------E-RLSEKSLATLGNLVVT-S-TGKK 273 (429)
Q Consensus 225 Ls~~~-----------------~----n~~~iv~~G~v~~Lv~lL~~~-------~-~~~~~a~~~L~~La~~-~-e~~~ 273 (429)
++... . ..........++.+...+.+. + .++..+..++..++.. + +...
T Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 364 (458)
T d1ibrb_ 285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP 364 (458)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhh
Confidence 75321 0 001111123345555554321 1 4566677777776652 2 2111
Q ss_pred HHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCC-HHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 274 AMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS-SEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 274 ~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~-~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
. +.+.+.+.+. +++...++.|+.+|..++.+. ++..... -..++|.|+..+.+.++.+|..|+|.|+.+.+
T Consensus 365 ~------l~~~i~~~l~-s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~ 436 (458)
T d1ibrb_ 365 H------VLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 436 (458)
T ss_dssp H------HHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 1 2335667777 678889999999999988542 2211111 13578999999999999999999999988876
Q ss_pred c
Q 014196 353 E 353 (429)
Q Consensus 353 ~ 353 (429)
.
T Consensus 437 ~ 437 (458)
T d1ibrb_ 437 L 437 (458)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=4.2e-06 Score=91.18 Aligned_cols=268 Identities=12% Similarity=0.119 Sum_probs=165.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIM 152 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~i 152 (429)
.+..+++.+.+.|++.|..|+..|......+.-.-..=....+++.|+.+|.+.++++|..|+.+|..++..-. +. .
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~-~~--~ 80 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EY--Q 80 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HH--H
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc-Hh--h
Confidence 47788999999999999999998887543221000000011257889999999999999999999999987642 21 1
Q ss_pred HhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC----CCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhc
Q 014196 153 VEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA----NTHIPLS--SSEILPFLVGILESGSSVETKELCIGALYNLS 226 (429)
Q Consensus 153 v~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~----~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs 226 (429)
+ ...++.|...+.+.+...+..++.+|..+...- ....... ....++.|...+.......++..|+.+|..+.
T Consensus 81 ~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~ 159 (1207)
T d1u6gc_ 81 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 159 (1207)
T ss_dssp H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence 1 124555666666666666777666666554211 1111110 11223344444444444467888899998886
Q ss_pred cCCCC-hhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHH
Q 014196 227 AVLDN-ARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYI 304 (429)
Q Consensus 227 ~~~~n-~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~ 304 (429)
..-.+ .... ...+++.++..+.++. .+++.|+.+|..++..-.. ... ..+.+.+++.+..+.+...+..++.+
T Consensus 160 ~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~--~~~~~~ll~~l~~~~~~~~~~~~~~~ 234 (1207)
T d1u6gc_ 160 SRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTYIQC 234 (1207)
T ss_dssp HHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHHH
T ss_pred HHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHH--HHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 53322 2111 1346677777787765 8889999999998863211 111 12234566655434455556667777
Q ss_pred HHHHhhCCHHHHHHHHh--CCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 305 LMILAHQSSEQRDKMAK--SGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 305 L~~L~~~~~~~~~~i~~--~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
+..++...+. .+.. ..++|.++..+...++..++.|...+..+..
T Consensus 235 l~~l~~~~~~---~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~ 281 (1207)
T d1u6gc_ 235 IAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 281 (1207)
T ss_dssp HHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcch---hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 8887763221 1112 4578999999988888889888887766654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=4.5e-05 Score=80.59 Aligned_cols=269 Identities=13% Similarity=0.041 Sum_probs=150.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCC-chH
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE--LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTY-TNK 149 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~-~nk 149 (429)
.++.+...+.++++..|..|+.++..++....+ .+.. ...++.|+.+|.++++.+|..|+|+|..++.... ...
T Consensus 396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~---~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~ 472 (888)
T d1qbkb_ 396 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP 472 (888)
T ss_dssp HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHH---HHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCH
T ss_pred HHHHHHHhhccchhHHHHHHHHHhhhhhhhHHH---HhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence 445555667788899999999999988864322 2221 2357889999999999999999999998874210 111
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCC--ccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhcc
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANT--HIPLSSSEILPFLVGILESGSSVETKELCIGALYNLSA 227 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 227 (429)
... -...++.++..+.+.+..++..|+.+|.++...... .+. -...++.|+..+..... ..+..+..++..++.
T Consensus 473 ~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~--~~~il~~l~~~l~~~~~-~~~~~~~~al~~l~~ 548 (888)
T d1qbkb_ 473 DTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY--LAYILDTLVFAFSKYQH-KNLLILYDAIGTLAD 548 (888)
T ss_dssp HHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG--HHHHHHHHHHHTTTCCH-HHHHHHHHHHHHHHH
T ss_pred hhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH--HHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHH
Confidence 212 234666677777777788888899999988744321 111 12345566666655443 333334444444332
Q ss_pred ---CCCChhHHHhcCcHHHHHHh------------------------ccC------------------------------
Q 014196 228 ---VLDNARPMVSNGVVHTLLKL------------------------CSM------------------------------ 250 (429)
Q Consensus 228 ---~~~n~~~iv~~G~v~~Lv~l------------------------L~~------------------------------ 250 (429)
..-+.....+ ..++.++.. +..
T Consensus 549 ~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 627 (888)
T d1qbkb_ 549 SVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ 627 (888)
T ss_dssp HHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1111111100 011111111 000
Q ss_pred ------Cc-chHHHHHHHHHHhhCC-hhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHH-HHHHHHh
Q 014196 251 ------KE-RLSEKSLATLGNLVVT-STGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSE-QRDKMAK 321 (429)
Q Consensus 251 ------~~-~~~~~a~~~L~~La~~-~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~-~~~~i~~ 321 (429)
.+ .+...++.++..++.. .+.-..++....+.+.+...+. +.++..++.|..++..++..... ....+-
T Consensus 628 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~-~~~~~vr~~a~~llgdl~~~~~~~~~~~l~- 705 (888)
T d1qbkb_ 628 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ-DKMPEVRQSSFALLGDLTKACFQHVKPCIA- 705 (888)
T ss_dssp TTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhC-CCChHHHHHHHHHHHHHHHhhhHHHHHHHH-
Confidence 01 2223333333333321 1111122222233445666666 67788899999999888764322 111111
Q ss_pred CCchHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 322 SGIVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 322 ~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.+++.|..-+.+....++..|+|.++.+..
T Consensus 706 -~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~ 735 (888)
T d1qbkb_ 706 -DFMPILGTNLNPEFISVCNNATWAIGEISI 735 (888)
T ss_dssp -HHHHHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence 256666666666777899999998887765
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=6.5e-05 Score=72.70 Aligned_cols=274 Identities=14% Similarity=0.071 Sum_probs=171.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 75 QKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE-LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 75 ~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~-~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
..+...|..++......+...+..++..+.......-. ......+-.+..+.+.+.+.-|+..|..+...+ +.|..+.
T Consensus 125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~-~~R~~fw 203 (477)
T d1ho8a_ 125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIW 203 (477)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHH
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCc-cHHHHHH
Confidence 34455565656666666666677776544332221111 111233334446678888888888898888886 5788776
Q ss_pred h--cCccchhhhhccC-----------------CCHHHHHHHHHHHHHhhccCCCccccccC--CcHHHHHHhhhcCCcH
Q 014196 154 E--AGILTKLPKNVDA-----------------VDESTRHEFGELLLSLSSLANTHIPLSSS--EILPFLVGILESGSSV 212 (429)
Q Consensus 154 ~--~G~i~~Lv~lL~~-----------------~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~ 212 (429)
+ ...+++|+.+|+. .......++.-++|-||..++....+... +.|+.|+++++....+
T Consensus 204 ~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KE 283 (477)
T d1ho8a_ 204 LHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKE 283 (477)
T ss_dssp TTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSH
T ss_pred HcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 4 3456666666642 11345677888999999876655555444 4599999999887777
Q ss_pred HHHHHHHHHHHHhccCCC--C----hhHHHhcCcHHHHHHhccC-C--c-chHHHHHHHHHH--------hhCChhcHHH
Q 014196 213 ETKELCIGALYNLSAVLD--N----ARPMVSNGVVHTLLKLCSM-K--E-RLSEKSLATLGN--------LVVTSTGKKA 274 (429)
Q Consensus 213 ~~~~~A~~aL~nLs~~~~--n----~~~iv~~G~v~~Lv~lL~~-~--~-~~~~~a~~~L~~--------La~~~e~~~~ 274 (429)
++.+-++.+|.|+..... + ...|+..++.+. +..|.. . | ++.+ .+..|.. ++..++...+
T Consensus 284 KvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~e-dl~~L~~~L~~~~k~lTsfd~Y~~E 361 (477)
T d1ho8a_ 284 KVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQ-DISNLKEILENEYQELTSFDEYVAE 361 (477)
T ss_dssp HHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHH-HHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 888999999999987533 2 234566666554 555542 1 2 3322 2222221 2212222222
Q ss_pred Hh-------------------------cCCCChHHHHHhccc---------CCChhHHHHHHHHHHHHhhCCHHHHHHHH
Q 014196 275 ME-------------------------DSPLVPESLIEILTW---------EEKPKCQELSAYILMILAHQSSEQRDKMA 320 (429)
Q Consensus 275 i~-------------------------~~~~i~~~Lv~~L~~---------~~s~~~~e~A~~~L~~L~~~~~~~~~~i~ 320 (429)
+. +...++..|+++|.. +.++....-|+.=++.++.+-|..+..+.
T Consensus 362 v~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~ 441 (477)
T d1ho8a_ 362 LDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD 441 (477)
T ss_dssp HHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHH
Confidence 21 112345578888741 12344445566667788877777888888
Q ss_pred hCCchHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 014196 321 KSGIVHVSLQLALLGSPLAQRRASKLLQWFK 351 (429)
Q Consensus 321 ~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~ 351 (429)
+-|+=..+++++.+.++.+|..|...++-+-
T Consensus 442 ~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 442 KTGGKADIMELLNHSDSRVKYEALKATQAII 472 (477)
T ss_dssp HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8899888999999999999999998776553
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.00012 Score=77.07 Aligned_cols=310 Identities=13% Similarity=0.081 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchH-HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCch-
Q 014196 71 CVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVK-IKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTN- 148 (429)
Q Consensus 71 ~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~-~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~n- 148 (429)
...++.++..|.++++.+|..|++.|..++..... ..... -...++.|+..+.++++.+++.|+++|.++.......
T Consensus 435 ~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l 513 (888)
T d1qbkb_ 435 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 513 (888)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 34567888889888999999999999988753211 11111 2357889999999999999999999999986432111
Q ss_pred HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC---CCccccc-------------------------------
Q 014196 149 KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA---NTHIPLS------------------------------- 194 (429)
Q Consensus 149 k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~---~~~~~i~------------------------------- 194 (429)
...+ ...++.++.++.......+..+..++..++... -.+..+.
T Consensus 514 ~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i 591 (888)
T d1qbkb_ 514 VPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSV 591 (888)
T ss_dssp GGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHH
T ss_pred hhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1100 123344455555544444333333333332110 0000000
Q ss_pred ----cCCcHHH-------HHHhhhc-----------------CCcHHHHHHHHHHHHHhcc-CCCChhH-HHhcCcHHHH
Q 014196 195 ----SSEILPF-------LVGILES-----------------GSSVETKELCIGALYNLSA-VLDNARP-MVSNGVVHTL 244 (429)
Q Consensus 195 ----~~g~i~~-------Lv~lL~~-----------------~~~~~~~~~A~~aL~nLs~-~~~n~~~-iv~~G~v~~L 244 (429)
..+..|. +++++.. .+. +....++.++..+.. ....... +.....++.+
T Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l 670 (888)
T d1qbkb_ 592 ATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK-DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLM 670 (888)
T ss_dssp HHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT-HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHH
T ss_pred HHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhH-HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHH
Confidence 0111111 1111100 011 223334444444443 1222222 2234566677
Q ss_pred HHhccCCc-chHHHHHHHHHHhhC-Chhc-HHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCH-HHHHHHH
Q 014196 245 LKLCSMKE-RLSEKSLATLGNLVV-TSTG-KKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSS-EQRDKMA 320 (429)
Q Consensus 245 v~lL~~~~-~~~~~a~~~L~~La~-~~e~-~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~-~~~~~i~ 320 (429)
+.++.+.. .+++.|..++..++. .+.. +..+. .+.+.|++.|. +.....+..|+++++.|+.... +...-+
T Consensus 671 ~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~---~~~~~l~~~L~-~~~~~v~~~a~~~ig~ia~~~~~~~~py~- 745 (888)
T d1qbkb_ 671 YQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA---DFMPILGTNLN-PEFISVCNNATWAIGEISIQMGIEMQPYI- 745 (888)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH---HHHHHHHHTCC-GGGHHHHHHHHHHHHHHHHHTGGGGGGGS-
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHhC-cCCHHHHHHHHHHHHHHHHHHHHHhhhhH-
Confidence 77777765 788889999988875 3222 22111 13346777777 6677888999999999886422 222211
Q ss_pred hCCchHHHHHHhhcC--CHHHHHHHHHHHHHHHh-ccccCCCCCCCCCccc--c-ccCCCCChhhhHHHHHHHHHHHH
Q 014196 321 KSGIVHVSLQLALLG--SPLAQRRASKLLQWFKD-ERQAKMGPHSGPQTRR--V-SIGSPVSPREAQEGKKMMKNLVQ 392 (429)
Q Consensus 321 ~~G~v~~L~~ll~~~--~~~~k~~A~~lL~~l~~-~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~k~~l~~~~~ 392 (429)
..+++.|+.+++.. ...++++++-.|+.+.. .|+. ..+| .|++.. . .+...++++.+..+=+.+-.+|+
T Consensus 746 -~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~-~~~~-l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~ 820 (888)
T d1qbkb_ 746 -PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQE-VAPM-LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMIS 820 (888)
T ss_dssp -HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHH-HGGG-GGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHH-HHhh-HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHH
Confidence 24778888988874 34578888888777764 2321 1222 233321 1 12222234445555556666665
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.70 E-value=3.6e-06 Score=65.80 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=82.0
Q ss_pred hcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHH
Q 014196 123 VSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFL 202 (429)
Q Consensus 123 L~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~L 202 (429)
|.++|+.+|..|+++|..+. ..+++.|+..+.+.+..+|..++.+|.++. ..+++|.|
T Consensus 1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L 58 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPL 58 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHH
Confidence 45667777777777776542 124677888899888999998888876543 23468999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHH
Q 014196 203 VGILESGSSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLG 263 (429)
Q Consensus 203 v~lL~~~~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~ 263 (429)
..+|.+.++ .++..|+.+|..+.. .++++.|..++.+++ .+++.|+.+|.
T Consensus 59 ~~~l~d~~~-~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 59 IKLLEDDSG-FVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHCCT-HHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred Hhhhccchh-HHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999887 799999999987742 356888889998876 77777776663
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.00048 Score=65.24 Aligned_cols=255 Identities=12% Similarity=0.091 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhchHHH-HHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc
Q 014196 71 CVLLQKSVKRLHFG--SWEEKEMAAKEIEKLAKEDVKIK-KLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 71 ~~~l~~lv~~L~~~--~~~~~~~Aa~~L~~La~~~~~~r-~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
...++.++..+.+. +...+..|+..+..+.......- .........+.+..++.+++++++..++.+|..++.....
T Consensus 170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 249 (458)
T d1ibrb_ 170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249 (458)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34567778888754 56788889988888775432211 1112223466778888889999999999999998754321
Q ss_pred h-HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC------------CCcc--ccc-------cCCcHHHHHHh
Q 014196 148 N-KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA------------NTHI--PLS-------SSEILPFLVGI 205 (429)
Q Consensus 148 n-k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~------------~~~~--~i~-------~~g~i~~Lv~l 205 (429)
. ...+ .....+.+...+.+...+.+..+...+..++... .... .+. ....+|.+...
T Consensus 250 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 328 (458)
T d1ibrb_ 250 YMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 328 (458)
T ss_dssp GCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 1 1111 1111222333445555666766766666664321 0000 000 11223444444
Q ss_pred hhcC------CcHHHHHHHHHHHHHhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHHhhCCh--hcHHHHh
Q 014196 206 LESG------SSVETKELCIGALYNLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVTS--TGKKAME 276 (429)
Q Consensus 206 L~~~------~~~~~~~~A~~aL~nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~~--e~~~~i~ 276 (429)
+... +....+..|..++..++....+. +. ...++.+...+.+++ ..++.++.+|..++... +......
T Consensus 329 ~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l 405 (458)
T d1ibrb_ 329 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 405 (458)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred hhcchhhhccccccHHHHHHHHHHHHHHhccHh--hh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH
Confidence 4321 11135677888888877533221 11 134566667777766 78888888999988643 2212222
Q ss_pred cCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcC
Q 014196 277 DSPLVPESLIEILTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLG 335 (429)
Q Consensus 277 ~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~ 335 (429)
..+.+.|+..+. +.++.+|..|+.+|..++..-+ +.....-.+++++..+..|
T Consensus 406 --~~i~~~l~~~l~-d~~~~VR~~a~~~l~~i~~~~~---~~~~~~~~l~~ll~~ll~g 458 (458)
T d1ibrb_ 406 --IQAMPTLIELMK-DPSVVVRDTAAWTVGRICELLP---EAAINDVYLAPLLQCLIEG 458 (458)
T ss_dssp --TTHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHGG---GGCCSTTTHHHHHHHHHCC
T ss_pred --HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhh---cccchhhHHHHHHHHHhCc
Confidence 335568999998 7899999999999998875211 1111223577777766654
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.63 E-value=0.00078 Score=69.06 Aligned_cols=258 Identities=10% Similarity=0.096 Sum_probs=157.0
Q ss_pred HHHHHHH-HhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCCc--
Q 014196 73 LLQKSVK-RLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE--VIGRRRAAIKALIQLANGTYT-- 147 (429)
Q Consensus 73 ~l~~lv~-~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~-- 147 (429)
.+..++. .+.++|+..+..|-..|..+..+++ .+.+..|...+.+. +..+|..|+..|.|.......
T Consensus 5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~ 76 (861)
T d2bpta1 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK 76 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence 3445554 4678899999999999988876542 13467788888653 578888888888887543321
Q ss_pred ---------------hHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC--CCccccccCCcHHHHHHhhhcCC
Q 014196 148 ---------------NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA--NTHIPLSSSEILPFLVGILESGS 210 (429)
Q Consensus 148 ---------------nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~ 210 (429)
.|..| -..++..+.+.+...+..++.++..++..+ .+.. ...++.|++.+.+.+
T Consensus 77 ~~~~~~~~~~~i~~~~~~~i-----k~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~ 147 (861)
T d2bpta1 77 TQQFAQRWITQVSPEAKNQI-----KTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQ 147 (861)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-----HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTS
T ss_pred hhhHHhhhHhcCCHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCC
Confidence 12222 223455666777778888888888887543 1111 235788888888776
Q ss_pred cHHHHHHHHHHHHHhccCCCCh-hHHHh--cCcHHHHHHhccC--Cc-chHHHHHHHHHHhhCC-hhcH--HHHhcCCCC
Q 014196 211 SVETKELCIGALYNLSAVLDNA-RPMVS--NGVVHTLLKLCSM--KE-RLSEKSLATLGNLVVT-STGK--KAMEDSPLV 281 (429)
Q Consensus 211 ~~~~~~~A~~aL~nLs~~~~n~-~~iv~--~G~v~~Lv~lL~~--~~-~~~~~a~~~L~~La~~-~e~~--~~i~~~~~i 281 (429)
+...+..|+.+|..++....+. ..+.. ...++.++..+.. .+ .++..++.+|.++... +..- .... ..+
T Consensus 148 ~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~--~~~ 225 (861)
T d2bpta1 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGER--NYL 225 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHH--HHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhh--hHH
Confidence 6567778899999988643332 11211 1233444443332 23 7788888888877653 2111 1111 112
Q ss_pred hHHHHHhcccCCChhHHHHHHHHHHHHhhCCHH-HHHHHHhCCchHHH-HHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 282 PESLIEILTWEEKPKCQELSAYILMILAHQSSE-QRDKMAKSGIVHVS-LQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 282 ~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~~~-~~~~i~~~G~v~~L-~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
.+.|.+.+. +.++..+..+..+|..++...++ ....+.+ .+..+ .....+.++.++..|..++..+.+
T Consensus 226 ~~~l~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~--~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~ 295 (861)
T d2bpta1 226 MQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ--ALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH--THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 346667776 67888899999999988763222 1211211 23333 334445678888888877665543
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.60 E-value=4e-05 Score=59.49 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=71.8
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCcccc
Q 014196 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPL 193 (429)
Q Consensus 114 G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i 193 (429)
.++++|+.+|.++++.++..|+++|.++.. .++++.|..++++.+..+|..++.+|..+.
T Consensus 22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~--------- 81 (111)
T d1te4a_ 22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--------- 81 (111)
T ss_dssp TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHhC---------
Confidence 368899999999999999999999976532 124677889999888999999999988764
Q ss_pred ccCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 194 SSSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 194 ~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
..++++.|..++++++. .++..|+.+|.
T Consensus 82 -~~~~~~~L~~ll~d~~~-~vr~~A~~aL~ 109 (111)
T d1te4a_ 82 -GERVRAAMEKLAETGTG-FARKVAVNYLE 109 (111)
T ss_dssp -SHHHHHHHHHHTTSCCT-HHHHHHHHHGG
T ss_pred -ccchHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 34568999999998887 78988888763
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.0042 Score=66.70 Aligned_cols=266 Identities=13% Similarity=0.136 Sum_probs=157.6
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHH
Q 014196 75 QKSVKRLHF-GSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMV 153 (429)
Q Consensus 75 ~~lv~~L~~-~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv 153 (429)
+.+...+.. .+...+..|+..|..+....+..-... ...+++.|+..|.++++.++..|+.+|..++...... . .
T Consensus 133 ~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~--~-~ 208 (1207)
T d1u6gc_ 133 GRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-F 208 (1207)
T ss_dssp HHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH--H-H
Confidence 333443433 367788888888888765433110000 1235778899999999999999999999998664211 1 1
Q ss_pred hcCccchhhhhcc-CCCHHHHHHHHHHHHHhhccCCCccccc--cCCcHHHHHHhhhcCCcHHHHHHHHHHHHHhccC-C
Q 014196 154 EAGILTKLPKNVD-AVDESTRHEFGELLLSLSSLANTHIPLS--SSEILPFLVGILESGSSVETKELCIGALYNLSAV-L 229 (429)
Q Consensus 154 ~~G~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~nLs~~-~ 229 (429)
...++.++..+. ......++.+..++..++..... .+. -...+|.+.+.+...+. ++++.++.++..+... +
T Consensus 209 -~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~~~-~~r~~al~~l~~l~~~~~ 284 (1207)
T d1u6gc_ 209 -VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDD-ELREYCIQAFESFVRRCP 284 (1207)
T ss_dssp -TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCT-TTHHHHHHHHHHHHHCTT
T ss_pred -HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHHHHhCh
Confidence 123444444443 33344455566667777643322 122 25678999999988877 6889899888888653 2
Q ss_pred CChhHHHhcCcHHHHHHhc-------------------------------------cCCc-chHHHHHHHHHHhhC-Chh
Q 014196 230 DNARPMVSNGVVHTLLKLC-------------------------------------SMKE-RLSEKSLATLGNLVV-TST 270 (429)
Q Consensus 230 ~n~~~iv~~G~v~~Lv~lL-------------------------------------~~~~-~~~~~a~~~L~~La~-~~e 270 (429)
...... -...++.++..+ .+.. .++..++.+|..+.. .++
T Consensus 285 ~~~~~~-~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~ 363 (1207)
T d1u6gc_ 285 KEVYPH-VSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 363 (1207)
T ss_dssp CCCHHH-HHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCT
T ss_pred hhhhhh-HHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 221111 011122221111 1112 567778888887776 344
Q ss_pred cHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC---CH-------------HHHHHHHh--CCchHHHHHHh
Q 014196 271 GKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ---SS-------------EQRDKMAK--SGIVHVSLQLA 332 (429)
Q Consensus 271 ~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~---~~-------------~~~~~i~~--~G~v~~L~~ll 332 (429)
.-..+.. .+.+.|+..+. +.++.++..+..++..+... .. .....+.+ ..+++.+...+
T Consensus 364 ~l~~~~~--~~~~~L~~~l~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l 440 (1207)
T d1u6gc_ 364 MLPEFYK--TVSPALISRFK-EREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQM 440 (1207)
T ss_dssp THHHHHT--TTHHHHHSTTS-CSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHHH--HHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHh
Confidence 4444443 34568999887 77888888888888766531 00 00111111 24566777777
Q ss_pred hcCCHHHHHHHHHHHHHHHh
Q 014196 333 LLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 333 ~~~~~~~k~~A~~lL~~l~~ 352 (429)
.+.+...+..+..++..+..
T Consensus 441 ~~~~~~~r~~~~~~l~~l~~ 460 (1207)
T d1u6gc_ 441 KEKSVKTRQCCFNMLTELVN 460 (1207)
T ss_dssp TCSCHHHHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHH
Confidence 78888999888888877765
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.07 E-value=0.0006 Score=60.21 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=53.6
Q ss_pred hhhHH-HHHHHHhccccccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHH
Q 014196 12 QFFSR-IRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKE 90 (429)
Q Consensus 12 ~TydR-Ie~W~~~g~~~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~ 90 (429)
.-|-| |+|||..+-.....-|.+ |+.-.|-... ++ .+ +..|...++.+++.++.
T Consensus 30 ~~~~~~~drf~~~~p~l~~~~l~~----p~~e~Ra~Aa----~~----a~-------------~~~L~~Ll~D~d~~VR~ 84 (233)
T d1lrva_ 30 VESGRQIDRFFRNNPHLAVQYLAD----PFWERRAIAV----RY----SP-------------VEALTPLIRDSDEVVRR 84 (233)
T ss_dssp SSCHHHHHHHHHHCGGGGGGGTTC----SSHHHHHHHH----TT----SC-------------GGGGGGGTTCSSHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHhcC----CcHHHHHHHH----hc----CC-------------HHHHHHHhcCCCHHHHH
Confidence 34777 999986654444555555 7666553331 11 00 22344556677778887
Q ss_pred HHHHHH-----HHHh-hhchHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHH
Q 014196 91 MAAKEI-----EKLA-KEDVKIKKLMAELGVIQMLVSMVSTEVIGRRRAAIK 136 (429)
Q Consensus 91 ~Aa~~L-----~~La-~~~~~~r~~i~~~G~i~~Lv~lL~s~~~~~~~~A~~ 136 (429)
.|+..| ..+. ..+...|..+++.=..+.|..++.++|..++..++.
T Consensus 85 ~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~ 136 (233)
T d1lrva_ 85 AVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQ 136 (233)
T ss_dssp HHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHh
Confidence 777543 1222 122334444444333455666666666666665543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.029 Score=57.06 Aligned_cols=273 Identities=12% Similarity=0.027 Sum_probs=156.2
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhhhchHHHHHHHh--cCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCC
Q 014196 72 VLLQKSVKRLHFG--SWEEKEMAAKEIEKLAKEDVKIKKLMAE--LGVIQMLVSMVSTE--VIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 72 ~~l~~lv~~L~~~--~~~~~~~Aa~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~ 145 (429)
+.++.+++.+.++ +...+..++..+..++++-.. ..+.. ...++.++..+.+. +..++..|+.++.+.....
T Consensus 128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~ 205 (876)
T d1qgra_ 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHh
Confidence 3578888888765 356777788888888753211 12222 34578888888654 4678999999988876443
Q ss_pred Cch-HHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC-CccccccCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 146 YTN-KAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN-THIPLSSSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 146 ~~n-k~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
..+ .......-.++.+...++.++.+.+..+...|..+..... .-.........+.+...+.+... .++..++..+.
T Consensus 206 ~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 284 (876)
T d1qgra_ 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDID-EVALQGIEFWS 284 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSH-HHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHH
Confidence 111 0011111134445666777778888888888888774321 11111122334445555555554 56666666665
Q ss_pred HhccCC---------------------CChhHHHhcCcHHHHHHhccCC-------c-chHHHHHHHHHHhhCChhcHHH
Q 014196 224 NLSAVL---------------------DNARPMVSNGVVHTLLKLCSMK-------E-RLSEKSLATLGNLVVTSTGKKA 274 (429)
Q Consensus 224 nLs~~~---------------------~n~~~iv~~G~v~~Lv~lL~~~-------~-~~~~~a~~~L~~La~~~e~~~~ 274 (429)
.++... .+.........++.+...+... + .....+..+|..++..... .
T Consensus 285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~ 362 (876)
T d1qgra_ 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D 362 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred HHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--h
Confidence 555311 0111112223444555544321 1 4566666677666542111 1
Q ss_pred HhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhC-CHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Q 014196 275 MEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQ-SSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWFKDE 353 (429)
Q Consensus 275 i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~-~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~ 353 (429)
+.. .+.+.+.+.+. +.+...++.++.++..+... ......... ..+++.++..+.+.++.++..|.|.+..+.+.
T Consensus 363 ~~~--~~~~~i~~~l~-~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 363 IVP--HVLPFIKEHIK-NPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hhh--hhHHHHHHhhc-cchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence 111 11224455555 57777888888888877654 333322222 23688999999999999999999998887753
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.012 Score=60.07 Aligned_cols=257 Identities=11% Similarity=0.044 Sum_probs=155.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCC------
Q 014196 75 QKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIKKLMAELGVIQMLVSMVSTE--VIGRRRAAIKALIQLANGTY------ 146 (429)
Q Consensus 75 ~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~~G~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~------ 146 (429)
-.++....++|.+.+..|=..|..+.+.++. |.+..|...+.+. +..+|..|+-.|.|.-....
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~--------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~ 75 (876)
T d1qgra_ 4 ITILEKTVSPDRLELEAAQKFLERAAVENLP--------TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 75 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcChh--------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhh
Confidence 3455555678889999999999988765421 3567778877554 46789999988888653321
Q ss_pred ----------chHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccccCCcHHHHHHhhhcCCc-HHHH
Q 014196 147 ----------TNKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLSSSEILPFLVGILESGSS-VETK 215 (429)
Q Consensus 147 ----------~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~ 215 (429)
+.|..|. ..++..+.+.+ ..+..++.++..++..+-.... =.+.+|.|.+.+.+++. ...+
T Consensus 76 ~~~~~~~i~~~~k~~ik-----~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~--Wpeli~~L~~~l~~~~~~~~~~ 147 (876)
T d1qgra_ 76 YQQRWLAIDANARREVK-----NYVLHTLGTET-YRPSSASQCVAGIACAEIPVNQ--WPELIPQLVANVTNPNSTEHMK 147 (876)
T ss_dssp HHHHHHTSCHHHHHHHH-----HHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGTC--CTTHHHHHHHHHHCTTCCHHHH
T ss_pred hhcccccCCHHHHHHHH-----HHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCccc--cHHHHHHHHHHhcCCCCcHHHH
Confidence 1222222 23556665544 2344566677777644310000 14679999999876542 3577
Q ss_pred HHHHHHHHHhccCCCC-hhHHHhcCcHHHHHHhccCC--c-chHHHHHHHHHHhhCC-hhc--HHHHhcCCCChHHHHHh
Q 014196 216 ELCIGALYNLSAVLDN-ARPMVSNGVVHTLLKLCSMK--E-RLSEKSLATLGNLVVT-STG--KKAMEDSPLVPESLIEI 288 (429)
Q Consensus 216 ~~A~~aL~nLs~~~~n-~~~iv~~G~v~~Lv~lL~~~--~-~~~~~a~~~L~~La~~-~e~--~~~i~~~~~i~~~Lv~~ 288 (429)
..++.+|..++..-.. ...-.-...++.++..+.+. + .++..++.++.+.... ... ...+. .-+...+...
T Consensus 148 ~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~--~~i~~~l~~~ 225 (876)
T d1qgra_ 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVCEA 225 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHH--HHHHHHHHHH
Confidence 7889999988753221 11111135677788877643 2 6777888888766542 111 11111 1123356666
Q ss_pred cccCCChhHHHHHHHHHHHHhhCCHHHHHHHHhCCchHHHHHHhhcCCHHHHHHHHHHHHHH
Q 014196 289 LTWEEKPKCQELSAYILMILAHQSSEQRDKMAKSGIVHVSLQLALLGSPLAQRRASKLLQWF 350 (429)
Q Consensus 289 L~~~~s~~~~e~A~~~L~~L~~~~~~~~~~i~~~G~v~~L~~ll~~~~~~~k~~A~~lL~~l 350 (429)
+. +.++..+..+..+|..++...++....-+...+.+.+........+..+..+...+..+
T Consensus 226 ~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 286 (876)
T d1qgra_ 226 TQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNV 286 (876)
T ss_dssp TT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred hc-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 66 67888899999999988864443333334444556666666677777777776554444
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.051 Score=54.90 Aligned_cols=299 Identities=13% Similarity=0.020 Sum_probs=163.1
Q ss_pred cchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhhhchHHHHHHHh--cCc
Q 014196 39 KSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGS-WEEKEMAAKEIEKLAKEDVKIKKLMAE--LGV 115 (429)
Q Consensus 39 PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~-~~~~~~Aa~~L~~La~~~~~~r~~i~~--~G~ 115 (429)
||..+|+.+......-.....|.. . =+..++.++..+.+.+ ...+..|+..+..++......-..+.. ...
T Consensus 107 ~~~~vr~~~a~~i~~i~~~~~p~~-~-----wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i 180 (861)
T d2bpta1 107 IEPRIANAAAQLIAAIADIELPHG-A-----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHHGGGT-C-----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCcC-c-----hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666677666554432211122211 1 1356788888887664 556677888888887543211111111 122
Q ss_pred HHHHHHhhc--CCCHHHHHHHHHHHHHhccCCCchH-HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccc
Q 014196 116 IQMLVSMVS--TEVIGRRRAAIKALIQLANGTYTNK-AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIP 192 (429)
Q Consensus 116 i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~nk-~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~ 192 (429)
++.++..+. ..+..++..|+.+|.++...-..+- ........++.+...++..+.+.+..+..++..+..... ..
T Consensus 181 l~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~--~~ 258 (861)
T d2bpta1 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY--TF 258 (861)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHH--HH
Confidence 334444443 3467899999999999876542221 111122345566777888888888888888888764321 11
Q ss_pred ccc--CCcHHHHH-HhhhcCCcHHHHHHHHHHHHHhccCCC-----------------ChhHHHhcCcHHHHHHhccCC-
Q 014196 193 LSS--SEILPFLV-GILESGSSVETKELCIGALYNLSAVLD-----------------NARPMVSNGVVHTLLKLCSMK- 251 (429)
Q Consensus 193 i~~--~g~i~~Lv-~lL~~~~~~~~~~~A~~aL~nLs~~~~-----------------n~~~iv~~G~v~~Lv~lL~~~- 251 (429)
+.. ...+..+. ....+.+. .++..++..+..++.... +...-.-...++.+...+.+.
T Consensus 259 ~~~~l~~~l~~l~~~~~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~ 337 (861)
T d2bpta1 259 MKPYMEQALYALTIATMKSPND-KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp CHHHHHHTHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhcCccH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 110 11233332 23334444 677778777776653211 000111123456666665421
Q ss_pred ------c-chHHHHHHHHHHhhCChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHhhCC-HHHHHHHHhCC
Q 014196 252 ------E-RLSEKSLATLGNLVVTSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILAHQS-SEQRDKMAKSG 323 (429)
Q Consensus 252 ------~-~~~~~a~~~L~~La~~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~~~~-~~~~~~i~~~G 323 (429)
+ .....+..+|..++..... .+.. .+.+.+...+. +.+...++.++.++..++... ......... .
T Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~--~~~~~~~~~~~-~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~-~ 411 (861)
T d2bpta1 338 EDPEDDDWNVSMSAGACLQLFAQNCGN--HILE--PVLEFVEQNIT-ADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-Q 411 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGG--GGHH--HHHHHHHHHTT-CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-H
T ss_pred ccccchhHHHHHHHHHHHHHHHhhcch--hhhh--hhcchhhhhhh-hHHHHHHHHHHHHHHHHHhhcchhhHHHHHH-H
Confidence 1 3445555566555542111 0110 01112333444 567788888989888887643 333333322 3
Q ss_pred chHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 014196 324 IVHVSLQLALLGSPLAQRRASKLLQWFKD 352 (429)
Q Consensus 324 ~v~~L~~ll~~~~~~~k~~A~~lL~~l~~ 352 (429)
+++.++..+.+.++.++..|.|.++.+.+
T Consensus 412 ~l~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T d2bpta1 412 ALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence 68888999998999999999998887765
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.78 E-value=0.0046 Score=59.40 Aligned_cols=221 Identities=13% Similarity=0.122 Sum_probs=142.8
Q ss_pred cCCCHHHHHHHHHHHHHHhhhchHHHHHHHh--cCcHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhc
Q 014196 82 HFGSWEEKEMAAKEIEKLAKEDVKIKKLMAE--LGVIQMLVSMVST-----------------EVIGRRRAAIKALIQLA 142 (429)
Q Consensus 82 ~~~~~~~~~~Aa~~L~~La~~~~~~r~~i~~--~G~i~~Lv~lL~s-----------------~~~~~~~~A~~aL~nLa 142 (429)
.+++.+.+.-++..+..+.+. ++.|..+.. ...+++|+..|.. .+..++-+++.+++-|+
T Consensus 175 ~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS 253 (477)
T d1ho8a_ 175 NIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT 253 (477)
T ss_dssp CTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence 345667777777888887764 578888754 4567888887753 12467888999999999
Q ss_pred cCCCchHHHHHhc--Cccchhhhhcc-CCCHHHHHHHHHHHHHhhccCC--C----ccccccCCcHHHHHHhhhcC---C
Q 014196 143 NGTYTNKAIMVEA--GILTKLPKNVD-AVDESTRHEFGELLLSLSSLAN--T----HIPLSSSEILPFLVGILESG---S 210 (429)
Q Consensus 143 ~~~~~nk~~iv~~--G~i~~Lv~lL~-~~~~~~~~~aa~~L~~Ls~~~~--~----~~~i~~~g~i~~Lv~lL~~~---~ 210 (429)
++. .....+.+. +.|+.|+.++. +....+.+.+..+|.|+..... + ...+...+++ +++..|... |
T Consensus 254 F~~-~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~D 331 (477)
T d1ho8a_ 254 FNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSD 331 (477)
T ss_dssp TSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSS
T ss_pred cCH-HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCC
Confidence 975 455566654 34888888886 4456777788889999986532 1 1122244444 455556542 3
Q ss_pred cHHHHHHHHHHH--------HHhccCC------------------------CChhHHHhc--CcHHHHHHhccC------
Q 014196 211 SVETKELCIGAL--------YNLSAVL------------------------DNARPMVSN--GVVHTLLKLCSM------ 250 (429)
Q Consensus 211 ~~~~~~~A~~aL--------~nLs~~~------------------------~n~~~iv~~--G~v~~Lv~lL~~------ 250 (429)
+ ++.. -+..| ..+++.+ +|..++-+. ..+..|+++|..
T Consensus 332 e-dl~e-dl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~ 409 (477)
T d1ho8a_ 332 E-ELRQ-DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGD 409 (477)
T ss_dssp H-HHHH-HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTC
T ss_pred H-HHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccc
Confidence 2 3332 12222 1122111 234343332 457788999852
Q ss_pred --C--c-chHHHHHHHHHHhhC-ChhcHHHHhcCCCChHHHHHhcccCCChhHHHHHHHHHHHHh
Q 014196 251 --K--E-RLSEKSLATLGNLVV-TSTGKKAMEDSPLVPESLIEILTWEEKPKCQELSAYILMILA 309 (429)
Q Consensus 251 --~--~-~~~~~a~~~L~~La~-~~e~~~~i~~~~~i~~~Lv~~L~~~~s~~~~e~A~~~L~~L~ 309 (429)
. + .+..-|+.=++.++. .|+||..+.+-|+= ..++++|. +.++.++.+|..++-.+.
T Consensus 410 ~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K-~~vM~Lm~-h~d~~Vr~eAL~avQklm 472 (477)
T d1ho8a_ 410 VNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGK-ADIMELLN-HSDSRVKYEALKATQAII 472 (477)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHH-HHHHHHTS-CSSHHHHHHHHHHHHHHH
T ss_pred cccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcH-HHHHHHhc-CCCHHHHHHHHHHHHHHH
Confidence 1 2 445556666788887 79999999887664 58999998 899999999998887654
|
| >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: U-box domain: Pre-mRNA splicing factor Prp19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.35 E-value=0.00033 Score=47.27 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=31.5
Q ss_pred CCCCcchhhhhhhhHH--HHHHHHhccc--cccCCCCCCCcccc
Q 014196 1 MSIPSSSYMRLQFFSR--IRQFIQSKSA--RRRQNEPNHNHEKS 40 (429)
Q Consensus 1 ~~~~~~~~~~~~TydR--Ie~W~~~g~~--~T~~~L~~~~L~PN 40 (429)
|-.|+..=.=|++|+| |++|+++.+. +|+++|...+|+|.
T Consensus 10 ~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLipi 53 (56)
T d2baya1 10 PRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI 53 (56)
T ss_dssp CSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred HHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhceeC
Confidence 3456655445899999 9999987555 99999998888885
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=95.55 E-value=0.018 Score=50.37 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=31.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCchHHHHHhcCccchhhhhccCCCHHHHHHHHH
Q 014196 114 GVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYTNKAIMVEAGILTKLPKNVDAVDESTRHEFGE 178 (429)
Q Consensus 114 G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~ 178 (429)
-.++.|..+++++|+.|+..|+..| . .+.|..++...+.+++..++.
T Consensus 66 a~~~~L~~Ll~D~d~~VR~~AA~~L---p---------------~~~L~~L~~D~d~~VR~~aa~ 112 (233)
T d1lrva_ 66 SPVEALTPLIRDSDEVVRRAVAYRL---P---------------REQLSALMFDEDREVRITVAD 112 (233)
T ss_dssp SCGGGGGGGTTCSSHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHc---C---------------HHHHHHHhcCCChhHHHHHHh
Confidence 3467788888999999998887543 1 234566666666666665554
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.57 E-value=2.2 Score=38.04 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=134.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhhhchHHH----HHHHh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc
Q 014196 73 LLQKSVKRLHFGSWEEKEMAAKEIEKLAKEDVKIK----KLMAE-LGVIQMLVSMVSTEVIGRRRAAIKALIQLANGTYT 147 (429)
Q Consensus 73 ~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~~~~r----~~i~~-~G~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~ 147 (429)
.+..++..|..-+.+.|+.++.....+.+.....| ..+.. ..++..|+..-+ ++++--.+-..|+.+..+. .
T Consensus 70 ~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREcik~e-~ 146 (330)
T d1upka_ 70 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIRHE-P 146 (330)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHTSH-H
T ss_pred hHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHHhhH-H
Confidence 36778888888888999999988888877655444 33443 345555555544 4455555666777777774 5
Q ss_pred hHHHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccCCCccccc----c--CCcHHHHHHhhhcCCcHHHHHHHHHH
Q 014196 148 NKAIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLANTHIPLS----S--SEILPFLVGILESGSSVETKELCIGA 221 (429)
Q Consensus 148 nk~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~~~~~i~----~--~g~i~~Lv~lL~~~~~~~~~~~A~~a 221 (429)
-...|.....+..+...++.+.-+.-..|..++..|-... +...+ . ...+....++|.+++. -+++.++..
T Consensus 147 lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h--k~~~aefl~~Nyd~Ff~~~~~LL~s~NY-VtrRqSlKL 223 (330)
T d1upka_ 147 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH--KLLSAEFLEQHYDRFFSEYEKLLHSENY-VTKRQSLKL 223 (330)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHTHHHHHHHHHHHTTCSSH-HHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC--HHHHHHHHHHhHHHHHHHHHHHhcCCch-HHHHHHHHH
Confidence 6777778888889999998888887777877777665322 22111 1 2356667889999998 689999999
Q ss_pred HHHhccCCCChhHHH----hcCcHHHHHHhccCCc-chHHHHHHHHHHhhCC
Q 014196 222 LYNLSAVLDNARPMV----SNGVVHTLLKLCSMKE-RLSEKSLATLGNLVVT 268 (429)
Q Consensus 222 L~nLs~~~~n~~~iv----~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~La~~ 268 (429)
|..+-....|...|. +..-+..++.+|+|.+ .++-.|.-+.--.+.+
T Consensus 224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN 275 (330)
T d1upka_ 224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 275 (330)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence 999998888875543 3466778888999876 7787887777655444
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=1.3 Score=34.66 Aligned_cols=109 Identities=10% Similarity=0.032 Sum_probs=78.8
Q ss_pred HHHHHHhccccccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 014196 17 IRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEI 96 (429)
Q Consensus 17 Ie~W~~~g~~~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L 96 (429)
|++|++.. |...+.. ||.. +|-+-|.... .. .......+..+.++|+++++.++..|+..|
T Consensus 2 le~liekA---T~~~~~~----~dw~---~il~icD~I~-----~~----~~~~k~a~ral~krl~~~n~~~~l~aL~LL 62 (143)
T d1mhqa_ 2 LELWLNKA---TDPSMSE----QDWS---AIQNFCEQVN-----TD----PNGPTHAPWLLAHKIQSPQEKEALYALTVL 62 (143)
T ss_dssp HHHHHHHH---HCTTCSS----CCHH---HHHHHHHHHH-----HS----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHH---cCCCCCC----cCHH---HHHHHHHHHH-----cC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35555443 4544443 7775 5667776430 00 112356788899999999999999999999
Q ss_pred HHHhhhc-hHHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHhccC
Q 014196 97 EKLAKED-VKIKKLMAELGVIQMLVSMVST------EVIGRRRAAIKALIQLANG 144 (429)
Q Consensus 97 ~~La~~~-~~~r~~i~~~G~i~~Lv~lL~s------~~~~~~~~A~~aL~nLa~~ 144 (429)
..+.+.. +.....+....++..|+.++.. .++.+++.++..+..++..
T Consensus 63 e~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~ 117 (143)
T d1mhqa_ 63 EMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (143)
T ss_dssp HHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9988764 6778888888899999999863 4678999999888777644
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=2.3 Score=33.24 Aligned_cols=103 Identities=12% Similarity=0.039 Sum_probs=77.5
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhh-chH
Q 014196 27 RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKE-DVK 105 (429)
Q Consensus 27 ~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~-~~~ 105 (429)
.|...+.. ||.. +|-+.|... ... + ......+..+.++|.++++.++..|+..|..+.+. ++.
T Consensus 16 AT~~~l~~----~dw~---~ileicD~I-----~~~--~--~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~ 79 (145)
T d1ujka_ 16 ATNPLNKE----LDWA---SINGFCEQL-----NED--F--EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR 79 (145)
T ss_dssp HTCTTCSS----CCHH---HHHHHHHHH-----TSS--T--THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHH
T ss_pred HcCCCCCC----cCHH---HHHHHHHHH-----hCC--C--ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHH
Confidence 35554443 7775 677778744 111 1 12356788899999999999999999999999886 477
Q ss_pred HHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHhccCC
Q 014196 106 IKKLMAELGVIQMLVSMVST------EVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 106 ~r~~i~~~G~i~~Lv~lL~s------~~~~~~~~A~~aL~nLa~~~ 145 (429)
.+..+...+++..|+.++.. .+..+++..+..|...+...
T Consensus 80 f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f 125 (145)
T d1ujka_ 80 FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 125 (145)
T ss_dssp HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence 88899999999999999963 46789999988887776443
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.14 E-value=8.2 Score=34.12 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=140.0
Q ss_pred HHHHhcCccchhhhhccCCCHHHHHHHHHHHHHhhccC-CCccc----cc-cCCcHHHHHHhhhcCCcHHHHHHHHHHHH
Q 014196 150 AIMVEAGILTKLPKNVDAVDESTRHEFGELLLSLSSLA-NTHIP----LS-SSEILPFLVGILESGSSVETKELCIGALY 223 (429)
Q Consensus 150 ~~iv~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~-~~~~~----i~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 223 (429)
..+...+.+..|+..|...+-+.|..++.+..++-... +.+.. +. ....+..|+.--.+.+ +--.+-..|.
T Consensus 63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~e---iAl~~G~mLR 139 (330)
T d1upka_ 63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE---IALNCGIMLR 139 (330)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT---THHHHHHHHH
T ss_pred HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcc---hhhhhhHHHH
Confidence 45666788888889999899999999988888776433 22222 11 2334444444433333 3334555566
Q ss_pred HhccCCCChhHHHhcCcHHHHHHhccCCc-chHHHHHHHHHH-hhCChhcHHHHhcC--CCChHHHHHhcccCCChhHHH
Q 014196 224 NLSAVLDNARPMVSNGVVHTLLKLCSMKE-RLSEKSLATLGN-LVVTSTGKKAMEDS--PLVPESLIEILTWEEKPKCQE 299 (429)
Q Consensus 224 nLs~~~~n~~~iv~~G~v~~Lv~lL~~~~-~~~~~a~~~L~~-La~~~e~~~~i~~~--~~i~~~Lv~~L~~~~s~~~~e 299 (429)
....+..-...+....-+..+.+.+..+. ++...|.+++.. |..++.....+... ........++|. +++-..+.
T Consensus 140 Ecik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~-s~NYVtrR 218 (330)
T d1upka_ 140 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH-SENYVTKR 218 (330)
T ss_dssp HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT-CSSHHHHH
T ss_pred HHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhc-CCchHHHH
Confidence 66667767788888888999999888777 899999999984 45576655555432 233345667787 78999999
Q ss_pred HHHHHHHHHhhC--CHHHHHHHHhC-CchHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Q 014196 300 LSAYILMILAHQ--SSEQRDKMAKS-GIVHVSLQLALLGSPLAQRRASKLLQWFKDERQ 355 (429)
Q Consensus 300 ~A~~~L~~L~~~--~~~~~~~i~~~-G~v~~L~~ll~~~~~~~k~~A~~lL~~l~~~~~ 355 (429)
.++..|..+-.. +......-+.. .-+..++.++++.+..+|-.|=.+.+.+-..|+
T Consensus 219 qSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpn 277 (330)
T d1upka_ 219 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN 277 (330)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCC
Confidence 999999988743 23344444443 346777888899999999999999999998664
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.74 E-value=10 Score=33.78 Aligned_cols=172 Identities=14% Similarity=0.124 Sum_probs=101.8
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHHhhhch-HHHHHHHhcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHhcc
Q 014196 77 SVKRLHFGS-WEEKEMAAKEIEKLAKEDV-KIKKLMAELGVIQMLVSMVST-----------EVIGRRRAAIKALIQLAN 143 (429)
Q Consensus 77 lv~~L~~~~-~~~~~~Aa~~L~~La~~~~-~~r~~i~~~G~i~~Lv~lL~s-----------~~~~~~~~A~~aL~nLa~ 143 (429)
.|..|+++- .+.....+..|+---+..+ .--+.+ ..+|+..|+.+|.. .|...+..++.+|..|..
T Consensus 7 yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn 85 (343)
T d2bnxa1 7 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 85 (343)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc
Confidence 455555542 2222233444442222232 222334 46678888887741 135567788888888877
Q ss_pred CCCchHHHHH-hcCccchhhhhccCCCHHHHHHHHHHHHHhhccCC----Cccc---------cccCCcHHHHHHhhhcC
Q 014196 144 GTYTNKAIMV-EAGILTKLPKNVDAVDESTRHEFGELLLSLSSLAN----THIP---------LSSSEILPFLVGILESG 209 (429)
Q Consensus 144 ~~~~nk~~iv-~~G~i~~Lv~lL~~~~~~~~~~aa~~L~~Ls~~~~----~~~~---------i~~~g~i~~Lv~lL~~~ 209 (429)
.. .....++ ..+++..++..+.++...++..+..+|..+|.... +... ..+.+-..+++..+.++
T Consensus 86 ~~-~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~ 164 (343)
T d2bnxa1 86 NK-FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 164 (343)
T ss_dssp SH-HHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred cH-HHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence 65 3445554 56789999999988888899989888888875432 1111 12456678888888877
Q ss_pred CcHHHHHHHHHHHHHhccCCCC-------hhHHHhcCcHHHHHHhccCC
Q 014196 210 SSVETKELCIGALYNLSAVLDN-------ARPMVSNGVVHTLLKLCSMK 251 (429)
Q Consensus 210 ~~~~~~~~A~~aL~nLs~~~~n-------~~~iv~~G~v~~Lv~lL~~~ 251 (429)
+..+.+..++..+-.|....++ +..+..+|.. .++.-|.+.
T Consensus 165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~-~il~~l~~~ 212 (343)
T d2bnxa1 165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH-QVLQELREI 212 (343)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH-HHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChH-HHHHHHHcc
Confidence 6545665444444445555444 2345556654 455555543
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.38 E-value=3.2 Score=32.66 Aligned_cols=103 Identities=12% Similarity=0.044 Sum_probs=75.8
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc-hH
Q 014196 27 RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED-VK 105 (429)
Q Consensus 27 ~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~-~~ 105 (429)
+|...+.. ||.. +|-+-|.... ..+ ......+..+-++|.++++.++..|+..|..+.+.. +.
T Consensus 10 AT~~~l~~----~dw~---~ileicD~In-----~~~----~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~ 73 (151)
T d1juqa_ 10 ATNPSNRQ----EDWE---YIIGFCDQIN-----KEL----EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR 73 (151)
T ss_dssp HTCTTCSS----CCHH---HHHHHHHHHH-----HST----THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH
T ss_pred HcCCCCCC----cCHH---HHHHHHHHHh-----cCC----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHH
Confidence 35555554 7775 5777776431 011 124667888999999999999999999999988763 55
Q ss_pred HHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHhccCC
Q 014196 106 IKKLMAELGVIQMLVSMVST------EVIGRRRAAIKALIQLANGT 145 (429)
Q Consensus 106 ~r~~i~~~G~i~~Lv~lL~s------~~~~~~~~A~~aL~nLa~~~ 145 (429)
.+..+....++..|+.++.. .+..+++..+..+...+...
T Consensus 74 F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f 119 (151)
T d1juqa_ 74 FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence 67888888889999999964 35689998888888876543
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.70 E-value=2.6 Score=32.87 Aligned_cols=101 Identities=7% Similarity=-0.012 Sum_probs=74.5
Q ss_pred cccCCCCCCCcccchhhHHHHHHHHHhhcccccCCCCCCCChhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhc-hH
Q 014196 27 RRRQNEPNHNHEKSRTLKNINCQEEKQVIIEEKNHEQSDIEEDDCVLLQKSVKRLHFGSWEEKEMAAKEIEKLAKED-VK 105 (429)
Q Consensus 27 ~T~~~L~~~~L~PN~~Lr~lI~~W~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~L~~~~~~~~~~Aa~~L~~La~~~-~~ 105 (429)
.|...+.. ||.. +|.+-|... . ..+ ......+..+.++|+++++.++..|+..|..+.+.. ..
T Consensus 13 AT~~~~~~----~dw~---~il~icD~I---~--~~~----~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~ 76 (145)
T d1dvpa1 13 ATSHLRLE----PDWP---SILLICDEI---N--QKD----VTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP 76 (145)
T ss_dssp HHCTTCSS----CCHH---HHHHHHHHH---H--TTS----SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH
T ss_pred HcCcCCCC----CCHH---HHHHHHHHH---h--CCC----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchH
Confidence 46665554 8877 567777643 0 111 123567888999999999999999999999998864 45
Q ss_pred HHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhcc
Q 014196 106 IKKLMAELGVIQMLVSMVSTE-VIGRRRAAIKALIQLAN 143 (429)
Q Consensus 106 ~r~~i~~~G~i~~Lv~lL~s~-~~~~~~~A~~aL~nLa~ 143 (429)
....+...+.+..|+.++.+. +..+++..+..+...+.
T Consensus 77 f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (145)
T d1dvpa1 77 VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (145)
T ss_dssp HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 677777788888898888654 67899999888877653
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.35 E-value=0.2 Score=37.31 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=38.2
Q ss_pred CCcchhhhhhhhHH--HHHHHHhcc---c--cccCCCCCCCcccchhhHHHHHHHHH
Q 014196 3 IPSSSYMRLQFFSR--IRQFIQSKS---A--RRRQNEPNHNHEKSRTLKNINCQEEK 52 (429)
Q Consensus 3 ~~~~~~~~~~TydR--Ie~W~~~g~---~--~T~~~L~~~~L~PN~~Lr~lI~~W~~ 52 (429)
.|++. -=|+||=| |.+|++... . ..++++...++.||..++++++++..
T Consensus 33 ~pv~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~ 88 (103)
T d1jm7a_ 33 EPVST-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (103)
T ss_dssp SCCBC-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred CeEEc-CCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 45553 35899999 999997643 2 77778877789999999999988864
|
| >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.89 E-value=0.27 Score=35.28 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=28.9
Q ss_pred hhhhhHH--HHHHHHhcc-c--cccCCCCCCCcc-cchhhHHHH
Q 014196 10 RLQFFSR--IRQFIQSKS-A--RRRQNEPNHNHE-KSRTLKNIN 47 (429)
Q Consensus 10 ~~~TydR--Ie~W~~~g~-~--~T~~~L~~~~L~-PN~~Lr~lI 47 (429)
=|+||-| |++|++.++ . ..++++...++. |.+++++.+
T Consensus 41 CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l 84 (86)
T d1rmda2 41 CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL 84 (86)
T ss_dssp TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred CCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence 4799999 999998664 3 778888766665 777777655
|
| >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: bard1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.67 E-value=0.17 Score=37.24 Aligned_cols=50 Identities=12% Similarity=-0.009 Sum_probs=37.3
Q ss_pred CCcchhhhhhhhHH--HHHHHHhccccccCCCCCCCcccchhhHHHHHHHHH
Q 014196 3 IPSSSYMRLQFFSR--IRQFIQSKSARRRQNEPNHNHEKSRTLKNINCQEEK 52 (429)
Q Consensus 3 ~~~~~~~~~~TydR--Ie~W~~~g~~~T~~~L~~~~L~PN~~Lr~lI~~W~~ 52 (429)
.|+.-.-=|+||-+ |++|+...--..+.++...++.||..|+.+|+.+..
T Consensus 34 ~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~ 85 (97)
T d1jm7b_ 34 EPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (97)
T ss_dssp SCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred cCceeCCCCCchhHHHHHHHHhccccccCCcCchhhCcccHHHHHHHHHHHH
Confidence 45433234899999 999994321177777777789999999999988763
|