Citrus Sinensis ID: 014215

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MVDDDGWEDNAAGTWAEESCWSQKREQEEELSKEFEKNVALTEESYNPDGNGDSQGTKHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSPDIISRKTVPNLDNHSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCTW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHEccccccccccccccccccccccccccccccccccccccccccccccccccHEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvdddgwednaagtwaeescwsQKREQEEELSKEFEKNVAlteesynpdgngdsqgtkheypsrpfaedcpfylrtgyckfgfcckfnhpvrgdfqglkenerggfvgqhLGQIQCKfyqstggckhgeacrfkhsieksEVSKSVLNAFNLpikleskgeglmEKTVQIQCKFYqrtegckhgeacrfshsteksenplpfsgangmkeskggslVEMTGLIGckyhlsaggckygnsckfshskekpqtyikksekaspelnflglpirvheiecpfymrngscaygvdcrfnhpdpvadegsdpfneasdpasrswspdiisrktvpnldnhsfhphwmlkskfnslqgsvypqakaelplsspalgnltktadtstyhqfnefperpgeplcdyfmktgnckyrsackfhhpkngdgkspvctw
Flexible Loop (DISEMBL)
mvdddgwednaagtwaeescwsQKREQEEELSKEFEKNVALTeesynpdgngdsqgtkheypsrpFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKleskgeglmEKTVQIQCKFYQRTEGCKHGEACRfshsteksenplpfsgANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTyikksekaspelnFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEASdpasrswspdiiSRKTVPNLDNHSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACkfhhpkngdgkspvctw
Low Complexity Region (SEG)
MVDDDGWEDNAAGTWAEESCWSQkreqeeelskefekNVALTEESYNPDGNGDSQGTKHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSPDIISRKTVPNLDNHSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCTW
Disordered region (IsUnstruct)
*****************************************************************FAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEAC****************************LVEMTGLIGCKYHLSAGGCKYGNSCKF********************LNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFN***************************************HSFHPHWMLKSKFN********************************************EPLCDYFMKTGNCKYRSACKFH**************
Disordered Region (DISOPRED)
MVDDDG******************************************************************YLRTGYCKFGFCCKFNHP***************************FYQSTGGCKHGEACR******************************************************************************************IGCKYHLSAGGCKYGNSCKF*******************************EIECPFYMRNGSCAYGVD*******************************************************************KAELPLSSPALG************************LCDYFMKTGNCKYRSACKFH**************
Disordered Region (DISEMBL)
MVDDDGWEDNAAGTWAE*******************KNVALTEESYNPDGNGDSQGTKHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADE***************WSPDIISRKTVPNLDNHSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPK***********
Disordered Region (DISPRO)
****DGW*D******************************************************RPFAEDCPFYLRTGYCKFGFCCKFNHPVR***********GGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK**VSKS****FNLPI*****GEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHS****************************GLIGCKYHLSAGGCKYGNSCKFSHSK*************SPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVAD***********PASRSWSPDIISRKTVPNLDNHSFHPHWMLKSKFNSLQGSVYPQAKAELPLSS***********************RPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSP*C**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDDDGWEDNAAGTWAEESCWSQxxxxxxxxxxxxxxxxxxxxxxYNPDGNGDSQGTKHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSPDIISRKTVPNLDNHSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCTW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	428	2.2.26 [Sep-21-2011]
Q9STM4	448	Zinc finger CCCH domain-c	no	no	0.558	0.533	0.397	3e-43
Q5RJC5	435	Zinc finger CCCH domain-c	yes	no	0.549	0.540	0.421	1e-42
Q941Q3	524	Zinc finger CCCH domain-c	no	no	0.598	0.488	0.296	1e-31
Q5ZDJ6	462	Zinc finger CCCH domain-c	yes	no	0.635	0.588	0.277	1e-28
Q5JLB5	439	Zinc finger CCCH domain-c	no	no	0.605	0.589	0.299	4e-28
Q2R4J4	444	Zinc finger CCCH domain-c	no	no	0.572	0.551	0.274	8e-28
Q8GXX7	397	Zinc finger CCCH domain-c	no	no	0.537	0.579	0.289	9e-28
Q2QT65	454	Zinc finger CCCH domain-c	no	no	0.572	0.539	0.268	2e-27
Q5NAW2	476	Zinc finger CCCH domain-c	no	no	0.558	0.502	0.274	1e-26
Q84W91	468	Zinc finger CCCH domain-c	no	no	0.560	0.512	0.270	2e-26

>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=1 SV=1

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/279 (39%), Positives = 146/279 (52%), Gaps = 40/279 (14%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGM--KESKGGSLVEMTGLIGCKYHL 229
           C FY RT  CK G +C+F+H   +       +  N +  KE  GG L    GLI CKY+ 
Sbjct: 116 CSFYMRTGSCKFGSSCKFNHPLARK---FQIARDNKVREKEDDGGKL----GLIDCKYYF 168

Query: 230 SAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYG 289
             GGCKYG +C+F+H      T  K    ++PELNFLGLP+R  E+ECP+YMRNGSC YG
Sbjct: 169 RTGGCKYGETCRFNH------TIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYG 222

Query: 290 VDCRFNHPDPVADEGSD-------------PFNEAS--DPASRSWSPDIISRKTVPNLDN 334
            +C+FNHPDP    G+D              F+  +    +S SWS       T P +  
Sbjct: 223 AECKFNHPDPTTIGGTDSPSFRGNNGVSIGTFSPKATFQASSTSWSSPRHVNGTSPFIPV 282

Query: 335 HSFHPHWMLKS--KFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTY-----HQF--N 385
                H +     ++N  Q SVY   +     S+  L N   +A+TS       HQ    
Sbjct: 283 MLSQTHGVTSQNPEWNGYQASVYSSERGVFSPSTTYLMN-NSSAETSMLLSQYRHQMPAE 341

Query: 386 EFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSP 424
           EFPERP +P C Y+MKTG+CK++  CK+HHPKN   K P
Sbjct: 342 EFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLP 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/268 (42%), Positives = 144/268 (53%), Gaps = 33/268 (12%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
           C FY RT  CK+G +C+F+H   +        G   ++E      VE   L+ CKY+   
Sbjct: 107 CSFYMRTGSCKYGSSCKFNHPVRRKLQ----IGRERVRERDED--VENPKLMECKYYFRT 160

Query: 232 GGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVD 291
           GGCKYG SC+FSH KE        S  + PELNFLGLPIR  E ECPFYMRNGSC +G D
Sbjct: 161 GGCKYGESCRFSHMKEH------NSPASVPELNFLGLPIRPGEKECPFYMRNGSCKFGSD 214

Query: 292 CRFNHPDPVADEGSD-PFNEASDPASRSWSPDIISRKTVPNLDNH-----------SFHP 339
           C+FNHPDP A  G D P    ++  S S      +  T  +   H           S  P
Sbjct: 215 CKFNHPDPTAIGGVDSPLYRGNNGGSFSPKAPSQASSTSWSSTRHMNGTGTAPFIPSMFP 274

Query: 340 HWM----LKSKFNSLQG-SVYPQAKAELPLSSPALGN-LTKTADTSTY-HQFN--EFPER 390
           H        S +N  Q  S YP  ++ L  SS  + N L +T+  S Y HQ +  EFPER
Sbjct: 275 HSRGVTPQASDWNGYQASSAYPPERSPLAPSSYQVNNSLAETSSFSQYQHQMSVEEFPER 334

Query: 391 PGEPLCDYFMKTGNCKYRSACKFHHPKN 418
           P +P C Y++KTG+CK++  CK+HHPKN
Sbjct: 335 PDQPECTYYLKTGDCKFKYKCKYHHPKN 362

Arabidopsis thaliana (taxid: 3702)

>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE=1 SV=1

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 142/330 (43%), Gaps = 74/330 (22%)

Query: 109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTV 168
           Q  G+  C  Y  T  CK GE+CRF H I   E    + +    P+      E   E+  
Sbjct: 173 QRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPE--GGIPDWKEAPV---VPNEEYPERPG 227

Query: 169 QIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYH 228
           +  C +Y +T+ CK+G  C+F+H  E++           +      SL E      C ++
Sbjct: 228 EPDCPYYIKTQRCKYGSKCKFNHPREEA----------AVSVETQDSLPERPSEPMCTFY 277

Query: 229 LSAGGCKYGNSCKFSHSKE------------------KPQTYIKKSEKASPEL--NFLGL 268
           +  G CK+G SCKF H K+                  +P          +P L  N  GL
Sbjct: 278 MKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHNSKGL 337

Query: 269 PIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSPDIISRKT 328
           P+R  E++CPFY++ GSC YG  CR+NHP+            A  P +   +  ++S  T
Sbjct: 338 PVRSGEVDCPFYLKTGSCKYGATCRYNHPE----------RTAFIPQAAGVNYSLVSSNT 387

Query: 329 VPNLDNHSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQFNEFP 388
             NL+                  G V P       L+ P LG ++ T           +P
Sbjct: 388 A-NLN-----------------LGLVTPATSFYQTLTQPTLGVISAT-----------YP 418

Query: 389 ERPGEPLCDYFMKTGNCKYRSACKFHHPKN 418
           +RPG+  CDY+MKTG CK+   CKFHHP +
Sbjct: 419 QRPGQSECDYYMKTGECKFGERCKFHHPAD 448

Involved in flower development. Functions in floral reproductive organ identity by binding AGAMOUS pre-mRNA and promoting its processing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=Os01g0616400 PE=2 SV=2

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 144/350 (41%), Gaps = 78/350 (22%)

Query: 109 QHLGQIQCKFYQSTGGCKHGEACRFKHS--IEKSEVSKSVLNAFNLPIKLESKGEGLMEK 166
           Q  G+  C FY  T  CK G +C+F H   + +  +      A N+        E   E+
Sbjct: 104 QRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEQAANV-------EESYPEQ 156

Query: 167 TVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEM-TGLIGC 225
             +  C F+ +T  CK G  C+F+H  EK  N L     N        S++ +      C
Sbjct: 157 EGEPDCPFFMKTGKCKFGSKCKFNHPKEKV-NALASGNTNDKHLIADSSILPVRPSEPLC 215

Query: 226 KYHLSAGGCKYGNSCKFSHSKE--------KPQTYI-------------------KKSEK 258
            ++   G CK+   CKF+H K+        +P++ +                   +    
Sbjct: 216 SFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVA 275

Query: 259 ASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRS 318
           A+ E N  GLP+R  E++CPFYM+ GSC +G  CRFNHPD +      P  +   P   S
Sbjct: 276 AAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPES 335

Query: 319 WSPDIISRKTVPNLDNHSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADT 378
                                  +L S  N +QG  +    A +P+     G +T     
Sbjct: 336 ----------------------MLLNSSANFMQGFDF--HAAHMPVGP---GPVT----- 363

Query: 379 STYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCTW 428
                   +P+RPG  +CD++MKTG CK+   CKFHHP +     P   W
Sbjct: 364 --------YPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANW 405

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 145/321 (45%), Gaps = 62/321 (19%)

Query: 155 KLESKGEGLM------EKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGM 208
           ++   G G M      E++ +  C +Y RT  C+ G +CRF+H  +++   L  + A  M
Sbjct: 63  QMTMSGSGAMQPGPYPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRN---LAIASAR-M 118

Query: 209 KESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGL 268
           K    G   E  G   C+Y+L  G CK+G +CKF H +EK             +LN LG 
Sbjct: 119 K----GEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREK------AGIAGRVQLNTLGY 168

Query: 269 PIRVHEIECPFYMRNGSCAYGVDCRFNHPD----PVADEGSDPFNEASDPASR------- 317
           P+R  E EC +Y++ G C YG  C+F+HP+      +  GS  +      A+        
Sbjct: 169 PLRPSEKECAYYLKTGQCKYGNTCKFHHPELFNAMASSRGSPIYPSVHSSATAGPPYTGT 228

Query: 318 --SWSPDIISRKTVPNLDNHSFH-----PHWMLK-SKFNSLQGSVYPQAKAELPLSSPAL 369
             SW+    S    P   N S +     P  +++   +NS  G + P + +E  L SP  
Sbjct: 229 MASWAFPRGSFIPSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSPGA 288

Query: 370 GNLTKTAD----------------TSTY-------HQFNEFPERPGEPLCDYFMKTGNCK 406
                T+                 +S+Y        + N FPERP +P C Y+MKTG+CK
Sbjct: 289 QQTYGTSQQVDASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCK 348

Query: 407 YRSACKFHHPKNGDGKSPVCT 427
           + + CKFHHP+     +P C 
Sbjct: 349 FGAVCKFHHPRVRSMPTPDCV 369

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2

 Score =  125 bits (313), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 134/310 (43%), Gaps = 65/310 (20%)

Query: 165 EKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG 224
           E+  +  C +Y RT  C+ G  C+F+H  ++         A  MK    G   +  G   
Sbjct: 55  ERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMA----VAAARMK----GEYPQRIGQPE 106

Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
           C+Y+L  G CK+G +CKF H +EK     +       +LN LG P+R +E EC +Y+R G
Sbjct: 107 CQYYLKTGTCKFGATCKFHHPREKAAIATRV------QLNALGYPLRPNEKECAYYLRTG 160

Query: 285 SCAYGVDCRFNHPDP----VADEGS--DPFNEASDPASRSWSPDIISRKTVPNLDNHSFH 338
            C +G  C+F+HP P    VA  GS   P    + P+  ++ P  ++   +    +    
Sbjct: 161 QCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTY-PGAVTNWPLSRSASFIAS 219

Query: 339 PHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNL--------TKTADTSTYHQFNE---- 386
           P W   S +  +   + P    ++P  +P    +         +TA  + Y+  +     
Sbjct: 220 PRWPGHSSYAQV---IVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTGSRHSET 276

Query: 387 -----------------------------FPERPGEPLCDYFMKTGNCKYRSACKFHHPK 417
                                        FPERP +P C ++MKTG+CK+ + CKFHHPK
Sbjct: 277 PNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPK 336

Query: 418 NGDGKSPVCT 427
                +P C 
Sbjct: 337 ERIIPTPNCA 346

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1

 Score =  125 bits (313), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 131/304 (43%), Gaps = 74/304 (24%)

Query: 165 EKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG 224
           E+  +  C +Y RT  C+ G  CRF+H  ++    L  + A  M+    G   E  G   
Sbjct: 39  ERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRE---LVIATAR-MR----GEYPERIGQPE 90

Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
           C+Y+L  G CK+G +CKF H + K     + S      LN LG P+R +E++C +++R G
Sbjct: 91  CEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVS------LNMLGYPLRSNEVDCAYFLRTG 144

Query: 285 SCAYGVDCRFNHPDPVADEGSDPFN-EASDPASRSWSPDIISRKTVPNLDNHSFHPHWML 343
            C +G  C+FNHP P       P + + S P SR+               +    P W  
Sbjct: 145 HCKFGGTCKFNHPQPQPTNMMVPTSGQQSYPWSRA---------------SFIASPRWQD 189

Query: 344 KSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTST----------------------- 380
            S + SL   + PQ    +   +P  G L   + + T                       
Sbjct: 190 PSSYASL---IMPQGVVPVQGWNPYSGQLGSVSPSGTGNDQNYRNLQQNETIESGSQSQG 246

Query: 381 ---------------YHQF---NEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGK 422
                          Y+     N FPERPG+P C ++MKTG+CK+ + CKFHHP++    
Sbjct: 247 SFSGYNPGSSVPLGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAP 306

Query: 423 SPVC 426
            P C
Sbjct: 307 PPDC 310

Arabidopsis thaliana (taxid: 3702)

>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 130/309 (42%), Gaps = 64/309 (20%)

Query: 165 EKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG 224
           E+  +  C +Y RT  C+ G  C+F+H   +    L  + A        G      G   
Sbjct: 65  ERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRK---LAVAAAR-----MNGEYPYRVGQPE 116

Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
           C+Y+L  G CK+G +CKF H +EK     +       +LN LG P+R +E EC +Y+R G
Sbjct: 117 CQYYLKTGTCKFGATCKFHHPREKAALANRV------QLNVLGYPMRPNEKECAYYLRTG 170

Query: 285 SCAYGVDCRFNHPDP------VADEGSDPFNEASDPASRSWSPDIISRKTVPNLDNHSFH 338
            C +   C+F+HP P      V +    P   A+ P   ++ P  ++  T+    +    
Sbjct: 171 QCKFASTCKFHHPQPSNTMVAVRNSMYSPGQSATSPGQHTY-PGAVTNWTLSRSASFIAS 229

Query: 339 PHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTA---------------------- 376
           P W   S +  +   + PQ   ++P  +P    +  ++                      
Sbjct: 230 PRWPGHSGYAQV---IVPQGLVQVPGWNPYAAQMGSSSPDDQQRTPVTTQYYGSRQSETG 286

Query: 377 ---DTSTYHQF---------------NEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKN 418
              D   Y  +               N FPERP +P C ++MKTG+CK+ + CKFHHPK 
Sbjct: 287 GMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKE 346

Query: 419 GDGKSPVCT 427
               +P C 
Sbjct: 347 RLVPAPNCA 355

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2

 Score =  121 bits (303), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 128/295 (43%), Gaps = 56/295 (18%)

Query: 163 LMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGL 222
           L E+  +  C +Y RT  C  G+ CR++H  ++           G + +      E  G 
Sbjct: 56  LPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEF----GGGARNAAALDYPERAGQ 111

Query: 223 IGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMR 282
             C+Y++  G CK+G +CK+ H K+               LN  G PIR+ E EC +YM+
Sbjct: 112 PICEYYMKTGTCKFGTNCKYHHPKQD-------GAVLPVMLNNSGFPIRLGEKECSYYMK 164

Query: 283 NGSCAYGVDCRFNHPD----PVADEGSDPFNEASDPASRSWS---------PDIISRKTV 329
            G C +G  C+F+HP+    P+      P    S  +   ++         P ++    +
Sbjct: 165 TGQCKFGTTCKFHHPEFGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYI 224

Query: 330 PNLDNHSFHPHWMLKSKFNSLQG-SVYPQA--------------------------KAEL 362
           P     S+ P  ML S    LQG S YP +                           + +
Sbjct: 225 PG----SYTP-MMLSSGMIPLQGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTI 279

Query: 363 PLSSPALGNLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPK 417
               P +   + T  +S   Q + FPERPG+P C Y+M+TG+CK+ + CK+HHP+
Sbjct: 280 AYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPR 334

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2

 Score =  120 bits (302), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 129/288 (44%), Gaps = 48/288 (16%)

Query: 165 EKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG 224
           E+     C +Y RT  C +G  CR++H  +++        +        G   E  G   
Sbjct: 44  ERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRA--------SVEATVRATGQYPERFGEPP 95

Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
           C+++L  G CK+G SCKF H K            +   LN  G P+R  + EC +Y++ G
Sbjct: 96  CQFYLKTGTCKFGASCKFHHPKNA------GGSMSHVPLNIYGYPVREGDNECSYYLKTG 149

Query: 285 SCAYGVDCRFNHPDPVADEGSDPFNEASD--PASRSWSPD---------IISRKTVPNLD 333
            C +G+ C+F+HP P       P   A    P+ +S  PD          ++R  +P   
Sbjct: 150 QCKFGITCKFHHPQPAGTTVPPPPASAPQFYPSVQSLMPDQYGGPSSSLRVARTLLPGSY 209

Query: 334 NHSFHPHWMLKSKFNSLQG----------SVYPQAK-----------AELPLSSPALGNL 372
               +   +L      + G          ++ P A+            +L  ++P+L  +
Sbjct: 210 MQGAYGPMLLTPGVVPIPGWSPYSAPVSPALSPGAQHAVGATSLYGVTQLTSTTPSLPGV 269

Query: 373 --TKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKN 418
             + ++ T    +   FPERPGEP C Y++KTG+CK+ ++CKFHHP++
Sbjct: 270 YPSLSSPTGVIQKEQAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRD 317

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
225452232	417	PREDICTED: zinc finger CCCH domain-conta	0.549	0.563	0.418	2e-49
307136126	475	nucleic acid binding protein [Cucumis me	0.551	0.496	0.398	3e-45
449469596	473	PREDICTED: zinc finger CCCH domain-conta	0.544	0.492	0.397	5e-45
449487726	473	PREDICTED: zinc finger CCCH domain-conta	0.544	0.492	0.394	3e-44
225456787	484	PREDICTED: zinc finger CCCH domain-conta	0.579	0.512	0.393	1e-43
255540399	495	nucleic acid binding protein, putative [	0.614	0.531	0.371	2e-43
359491687	481	PREDICTED: zinc finger CCCH domain-conta	0.579	0.515	0.387	1e-42
297816042	447	zinc finger (CCCH-type) family protein [	0.591	0.565	0.382	2e-42
356507323	570	PREDICTED: zinc finger CCCH domain-conta	0.565	0.424	0.386	6e-42
334188594	451	zinc finger CCCH domain-containing prote	0.563	0.534	0.413	6e-42

>gi|225452232|ref|XP_002268612.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 1 [Vitis vinifera] gi|296081325|emb|CBI17707.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 124/296 (41%), Positives = 160/296 (54%), Gaps = 61/296 (20%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGM-KESKGGSLVEMTGLIGCKYHLS 230
           C +Y RT  CK G  C+F+H       P+  +G  G  +E++G  L E    I CKY+L+
Sbjct: 65  CPYYVRTGSCKFGLNCKFNH-------PVTRTGQVGKERENEGEGLSEK---IECKYYLT 114

Query: 231 AGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGV 290
            GGCKYGNSC++SHSKE        +E A+ E NFLGLP+RV E ECP+YMR GSC YG 
Sbjct: 115 GGGCKYGNSCRYSHSKET-------NELATLEYNFLGLPMRVGEKECPYYMRTGSCGYGA 167

Query: 291 DCRFNHPDPVADEGSDP------------------------FNEASDPASRSWSPDIISR 326
           +CRF+HPDP +  GS+P                         + AS P+  SWS  ++S 
Sbjct: 168 NCRFHHPDPTSVGGSEPNGNGESVGGFDSLGNHNGESTILNLSGASQPSMPSWSSHMLSN 227

Query: 327 KTVPNLDNHS------------FHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTK 374
           K VP  DN S             HP+  L    N  Q  ++ Q       S   L  L K
Sbjct: 228 KRVPYSDNRSSYVPAMHSVAQGIHPNLDL----NGYQAPIHSQGMPRHLHSGLTLNKLMK 283

Query: 375 TADTSTYH---QFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCT 427
            +D S ++   Q  EFPERPG+P CDYFMKTG+CKY+SAC++HHPK+     PVC 
Sbjct: 284 KSDVSQHYEQTQVEEFPERPGKPECDYFMKTGDCKYKSACRYHHPKSRVPGLPVCA 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136126|gb|ADN33972.1| nucleic acid binding protein [Cucumis melo subsp. melo]

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/271 (39%), Positives = 149/271 (54%), Gaps = 35/271 (12%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
           C FY +T  CK G  C+F+H   K    +  S      +   G+  +      CK++L  
Sbjct: 147 CAFYLKTGTCKFGSFCKFNHPVRKKNQVV--SEKLKYDDDSAGTANKTE----CKFYLRT 200

Query: 232 GGCKYGNSCKFSHSKEKPQTYIKKSEKASP--ELNFLGLPIRVHEIECPFYMRNGSCAYG 289
           GGCK+GN+C+++H++ +  T        SP  ELNFLGLPIR  E ECP+YMR GSC YG
Sbjct: 201 GGCKFGNACRYNHTRSRALT--------SPILELNFLGLPIRPDEKECPYYMRTGSCKYG 252

Query: 290 VDCRFNHPDPVADEGSD---------PFNEASDPASRSW-SPDIISRKT--VPNLDNHSF 337
            +C+FNHPDP    GS+         P   AS     SW SP +++  T  VP + + S 
Sbjct: 253 ANCKFNHPDPTTVAGSESLSGYNNGVPLQGASQSQITSWTSPRVLNEATTFVPAMISPSQ 312

Query: 338 HPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADT-STYHQFNEFPERPGEPLC 396
              W      N  Q  +YP   + LP     + N+   AD  S++ Q +E+PERPG+P C
Sbjct: 313 DSEW------NGYQAPIYPSEISVLPPPPYVVNNIAPEADLYSSHQQVDEYPERPGQPEC 366

Query: 397 DYFMKTGNCKYRSACKFHHPKNGDGKSPVCT 427
            YF+KTG+CK++S CK+HHPKN + K P CT
Sbjct: 367 SYFLKTGDCKFKSLCKYHHPKNRNPKLPTCT 397

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469596|ref|XP_004152505.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like [Cucumis sativus]

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 109/274 (39%), Positives = 149/274 (54%), Gaps = 41/274 (14%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG---CKYH 228
           C FY +T  CK G  C+F+H         P    N +   K     + TG      CK++
Sbjct: 145 CAFYLKTGTCKFGSFCKFNH---------PVRKKNQVVSEKLKYEDDSTGTANRTECKFY 195

Query: 229 LSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASP--ELNFLGLPIRVHEIECPFYMRNGSC 286
           L  GGCK+GN+C+++H++ +  T        SP  ELNFLGLPIR  E ECP+YMR GSC
Sbjct: 196 LRTGGCKFGNACRYNHTRPRALT--------SPILELNFLGLPIRPDEKECPYYMRTGSC 247

Query: 287 AYGVDCRFNHPDPVADEGSD---------PFNEASDPASRSW-SPDIISRKT--VPNLDN 334
            YG +C+FNHPDP    GS+         P   AS     SW SP +++  T  VP + +
Sbjct: 248 KYGANCKFNHPDPTTVAGSESLSGYNNGVPLQGASQSQITSWTSPRVLNEATTFVPAMIS 307

Query: 335 HSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADT-STYHQFNEFPERPGE 393
            S    W      N  Q  +YP   + LP  +  + N+    D  S++ Q +E+PERPG+
Sbjct: 308 PSQDQDW------NGYQAPIYPSEISVLPPPAYVVNNIAPETDLYSSHQQVDEYPERPGQ 361

Query: 394 PLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCT 427
           P C YF+KTG+CK++S CK+HHPKN + K P CT
Sbjct: 362 PECSYFLKTGDCKFKSLCKYHHPKNRNPKLPTCT 395

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487726|ref|XP_004157770.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like [Cucumis sativus]

 Score =  186 bits (471), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 108/274 (39%), Positives = 148/274 (54%), Gaps = 41/274 (14%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG---CKYH 228
           C FY +T  CK G  C+F+H         P    N +   K     + TG      CK++
Sbjct: 145 CAFYLKTGTCKFGSFCKFNH---------PVRKKNQVVSEKLKYEDDSTGTANRTECKFY 195

Query: 229 LSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASP--ELNFLGLPIRVHEIECPFYMRNGSC 286
           L  GGCK+GN+C+++H++ +  T        SP  ELNFLGLPIR  E ECP+YMR GSC
Sbjct: 196 LRTGGCKFGNACRYNHTRPRALT--------SPILELNFLGLPIRPDEKECPYYMRTGSC 247

Query: 287 AYGVDCRFNHPDPVADEGSD---------PFNEASDPASRSW-SPDIISRKT--VPNLDN 334
            YG +C+FNHPDP    GS+         P   AS     SW SP +++  T  VP + +
Sbjct: 248 KYGANCKFNHPDPTTVAGSESLSGYNNGVPLQGASQSQITSWTSPRVLNEATTFVPAMIS 307

Query: 335 HSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADT-STYHQFNEFPERPGE 393
            S    W      N  Q  +YP     LP  +  + ++    D  S++ Q +E+PERPG+
Sbjct: 308 PSQDQDW------NGYQAPIYPSEIGVLPPPAYVVNSIAPETDLYSSHQQVDEYPERPGQ 361

Query: 394 PLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCT 427
           P C YF+KTG+CK++S CK+HHPKN + K P CT
Sbjct: 362 PECSYFLKTGDCKFKSLCKYHHPKNRNPKLPTCT 395

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456787|ref|XP_002277300.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 1 [Vitis vinifera] gi|297733636|emb|CBI14883.3| unnamed protein product [Vitis vinifera]

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/282 (39%), Positives = 145/282 (51%), Gaps = 34/282 (12%)

Query: 170 IQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHL 229
           + C FY RT  CK G  C+F+H   +            +KE +     E  G   CKY+L
Sbjct: 133 VDCSFYLRTGTCKFGSNCKFNHPIRRKNQ----VAKEKVKEKEKEEFPERPGQTECKYYL 188

Query: 230 SAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYG 289
             GGCK+G +C+++H+K KP      S     ELNFLGLPIR+ E ECP+YMR GSC YG
Sbjct: 189 RTGGCKFGKACRYNHTKAKP------SAVPVLELNFLGLPIRMGEKECPYYMRTGSCKYG 242

Query: 290 VDCRFNHPDPVA-----------DEGSDPFNEASDPASRSWSPDIISRKTVPNLDNHSFH 338
            +CRFNHPDP A           + GS P   AS     SWS      +  P +    F 
Sbjct: 243 ANCRFNHPDPTAAGGYESPSGYGNGGSVPLQGASQSNMASWSSPRALNEPAPFVP-IMFS 301

Query: 339 PHWML---KSKFNSLQGSVYPQAKAELPLSSP---ALGNLTKTADTSTYHQ------FNE 386
           P   +     ++N  Q  +YP    E  +  P    + N    A+   +HQ        +
Sbjct: 302 PTQGVPPPNPEWNGYQAPLYPPPPPERSMHPPPAFVINNTATDANVYGHHQQQQQSLIED 361

Query: 387 FPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCTW 428
           FPERPG+P C YF+KTG+CK+R+ACK+HHPKN   KSP CT 
Sbjct: 362 FPERPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCTL 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540399|ref|XP_002511264.1| nucleic acid binding protein, putative [Ricinus communis] gi|223550379|gb|EEF51866.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 111/299 (37%), Positives = 152/299 (50%), Gaps = 36/299 (12%)

Query: 148 NAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANG 207
           N +  P++ E++            C +Y +T  CK G  C+F+H  ++          + 
Sbjct: 137 NQYQYPVRPEAE-----------DCSYYMKTGTCKFGSNCKFNHPVKRKMQ------VSK 179

Query: 208 MKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEK-ASPELNFL 266
            K  +     +  G   CKY+L  GGCKYG +C+++HS+ KP     K+    + +LNFL
Sbjct: 180 EKVKEREEATDRPGQTECKYYLRTGGCKYGKACRYNHSRAKPLLLQAKTAVFPALDLNFL 239

Query: 267 GLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPF---NEASDPASRSWSPDI 323
           GLPIR  E ECP+YMRNGSC YG +CRFNHPDP    GSDP    N  S     S   +I
Sbjct: 240 GLPIRPGERECPYYMRNGSCKYGANCRFNHPDPTTVGGSDPLAFSNGGSASLQNSLQSNI 299

Query: 324 ISRKT------VPNLDNHSFHPHWMLKSK---FNSLQGSVYPQAKAELPLSSPALGNLTK 374
            S  +       P+  +  F P   + S+   +N  Q   +P  +  +    PA      
Sbjct: 300 ASWSSPGGLNETPSFMSIMFSPTQGVPSQNPEWNGYQVCYFPLYERSM-HQPPAYVISNP 358

Query: 375 TADTSTYH-----QFNEFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCTW 428
             DT+ Y      Q  EFPERPG+P C YFMKTG+CK++S CK+HHPKN   KSP C  
Sbjct: 359 ATDTNVYAHQQQIQVEEFPERPGQPECSYFMKTGDCKFKSNCKYHHPKNHISKSPPCVL 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491687|ref|XP_003634306.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 2 [Vitis vinifera]

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/279 (38%), Positives = 144/279 (51%), Gaps = 31/279 (11%)

Query: 170 IQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHL 229
           + C FY RT  CK G  C+F+H   +            +KE +     E  G   CKY+L
Sbjct: 133 VDCSFYLRTGTCKFGSNCKFNHPIRRKNQ----VAKEKVKEKEKEEFPERPGQTECKYYL 188

Query: 230 SAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYG 289
             GGCK+G +C+++H+K KP      S     ELNFLGLPIR+ E ECP+YMR GSC YG
Sbjct: 189 RTGGCKFGKACRYNHTKAKP------SAVPVLELNFLGLPIRMGEKECPYYMRTGSCKYG 242

Query: 290 VDCRFNHPDPVA-----------DEGSDPFNEASDPASRSWSPDIISRKTVPNLDNHSFH 338
            +CRFNHPDP A           + GS P   AS     SWS      +  P +    F 
Sbjct: 243 ANCRFNHPDPTAAGGYESPSGYGNGGSVPLQGASQSNMASWSSPRALNEPAPFVP-IMFS 301

Query: 339 PHWML---KSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQ------FNEFPE 389
           P   +     ++N  Q  +    ++  P  +  + N    A+   +HQ        +FPE
Sbjct: 302 PTQGVPPPNPEWNGYQVFMLLLKRSMHPPPAFVINNTATDANVYGHHQQQQQSLIEDFPE 361

Query: 390 RPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCTW 428
           RPG+P C YF+KTG+CK+R+ACK+HHPKN   KSP CT 
Sbjct: 362 RPGQPECSYFLKTGDCKFRAACKYHHPKNRIPKSPPCTL 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816042|ref|XP_002875904.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata] gi|297321742|gb|EFH52163.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/298 (38%), Positives = 153/298 (51%), Gaps = 45/298 (15%)

Query: 158 SKGEGLMEKTV------QIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGM--K 209
           S+ E  M +TV         C FY RT  CK G +C+F+H   +    +  +  N +  K
Sbjct: 96  SENESEMRETVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARK---IQIARDNKVREK 152

Query: 210 ESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLP 269
           E  GG L    GLI CKY+   GGCKYG +C+F+H      T  K    ++PELNFLGLP
Sbjct: 153 EEDGGKL----GLIDCKYYFRTGGCKYGETCRFNH------TLPKSCLASAPELNFLGLP 202

Query: 270 IRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPFN---------------EASDP 314
           IR  E+ECP+YMRNGSC +G +C+FNHPDP    G+D  +                A   
Sbjct: 203 IRPGEVECPYYMRNGSCKFGAECKFNHPDPTTIGGTDSLSFHGNNGVSIGTFSPKSAFQA 262

Query: 315 ASRSWSPDIISRKTVPNLDNHSFHPHWMLKS--KFNSLQGSVYPQAKAELPLSSPALGNL 372
           +S SW+       T P +       H +     ++N  Q SVY   +     S+  L N 
Sbjct: 263 SSTSWTSPRHVNGTSPFIPVMLSQTHGVPSQTPEWNGYQASVYSSERGLFSPSTTYLMN- 321

Query: 373 TKTADTSTYHQFN------EFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSP 424
             +A+TS   Q+       EFPERP +P C Y+MKTG+CK++  CK+HHPKN   K P
Sbjct: 322 NLSAETSMLSQYRHQMPAEEFPERPDQPDCSYYMKTGDCKFKFNCKYHHPKNRLPKLP 379

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507323|ref|XP_003522417.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like [Glycine max]

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 107/277 (38%), Positives = 146/277 (52%), Gaps = 35/277 (12%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSL---VEMTGLIGCKYH 228
           C FY +T  CK G  C+F+H         P    N  K+   G      E +G + CKY+
Sbjct: 239 CAFYLKTGTCKFGFNCKFNH---------PLRRKNQAKKENAGEREEQAERSGQMECKYY 289

Query: 229 LSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAY 288
           L +GGCK+G +CKF+H++ K       S  ++ ELNFLGLPIRV E EC +YMR GSC +
Sbjct: 290 LRSGGCKFGKACKFNHTRGK------SSSASATELNFLGLPIRVGEKECLYYMRTGSCKF 343

Query: 289 GVDCRFNHPDPVADEGSDPFNEASDPASRSW-----SPDIISRKTVPNLDNHSFHPHWM- 342
           G +CRFNHPDP    G D  +   + +S S      S       T P  ++  F P  + 
Sbjct: 344 GANCRFNHPDPTTVGGGDSPSGYGNGSSISLQGVSQSSISSWSSTRPLNESAPFVPVILS 403

Query: 343 -------LKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQ----FNEFPERP 391
                    S++N  Q  VY   ++  P S+  + N    ++   +HQ      EFPERP
Sbjct: 404 PNPGVSPQSSEWNGYQAPVYLSERSLHPPSTYVMNNPAMESNVYMHHQKQMLVEEFPERP 463

Query: 392 GEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCTW 428
           GEP C YF+KTG+CK++S CKFHHPKN   + P+C  
Sbjct: 464 GEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPLCNL 500

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188594|ref|NP_001190604.1| zinc finger CCCH domain-containing protein 67 [Arabidopsis thaliana] gi|332010342|gb|AED97725.1| zinc finger CCCH domain-containing protein 67 [Arabidopsis thaliana]

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 115/278 (41%), Positives = 146/278 (52%), Gaps = 37/278 (13%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESK----------GGSLVEMTG 221
           C FY RT  CK+G +C+F+H   +    L F G+   +  K              VE   
Sbjct: 107 CSFYMRTGSCKYGSSCKFNHPVRRKLQDLKFLGSMRTRNGKEYIGRERVRERDEDVENPK 166

Query: 222 LIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYM 281
           L+ CKY+   GGCKYG SC+FSH KE        S  + PELNFLGLPIR  E ECPFYM
Sbjct: 167 LMECKYYFRTGGCKYGESCRFSHMKEH------NSPASVPELNFLGLPIRPGEKECPFYM 220

Query: 282 RNGSCAYGVDCRFNHPDPVADEGSD-PFNEASDPASRSWSPDIISRKTVPNLDNH----- 335
           RNGSC +G DC+FNHPDP A  G D P    ++  S S      +  T  +   H     
Sbjct: 221 RNGSCKFGSDCKFNHPDPTAIGGVDSPLYRGNNGGSFSPKAPSQASSTSWSSTRHMNGTG 280

Query: 336 ------SFHPHWM----LKSKFNSLQG-SVYPQAKAELPLSSPALGN-LTKTADTSTY-H 382
                 S  PH        S +N  Q  S YP  ++ L  SS  + N L +T+  S Y H
Sbjct: 281 TAPFIPSMFPHSRGVTPQASDWNGYQASSAYPPERSPLAPSSYQVNNSLAETSSFSQYQH 340

Query: 383 QFN--EFPERPGEPLCDYFMKTGNCKYRSACKFHHPKN 418
           Q +  EFPERP +P C Y++KTG+CK++  CK+HHPKN
Sbjct: 341 QMSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKN 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	428
TAIR|locus:2101170	448	AT3G48440 [Arabidopsis thalian	0.287	0.274	0.5	1.3e-38
TAIR|locus:2171407	375	ZFN3 "zinc finger nuclease 3"	0.549	0.626	0.290	7.1e-34
TAIR|locus:2075477	397	ZFN1 "zinc finger protein 1" [	0.308	0.332	0.342	4.1e-31
TAIR|locus:2087775	524	HUA1 "ENHANCER OF AG-4 1" [Ara	0.485	0.396	0.296	4.8e-26
TAIR|locus:2081066	462	AT3G06410 [Arabidopsis thalian	0.443	0.411	0.306	2.5e-29
TAIR|locus:2043368	468	AT2G47850 [Arabidopsis thalian	0.275	0.252	0.353	2.2e-28
TAIR|locus:2182988	465	AT5G18550 [Arabidopsis thalian	0.371	0.341	0.312	6.6e-28
TAIR|locus:2010562	404	AT1G04990 [Arabidopsis thalian	0.443	0.470	0.320	3.3e-21
TAIR|locus:1006230718	82	AT1G48195 [Arabidopsis thalian	0.098	0.512	0.571	1.7e-10
ZFIN|ZDB-GENE-990806-20	319	cth1 "cth1" [Danio rerio (taxi	0.357	0.479	0.212	6e-06

TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 68/136 (50%), Positives = 84/136 (61%)

Query:   172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
             C FY RT  CK G +C+F+H   +    +        KE  GG L    GLI CKY+   
Sbjct:   116 CSFYMRTGSCKFGSSCKFNHPLARKFQ-IARDNKVREKEDDGGKL----GLIDCKYYFRT 170

Query:   232 GGCKYGNSCKFSHSKEKPQTYIKKSEKAS-PELNFLGLPIRVHEIECPFYMRNGSCAYGV 290
             GGCKYG +C+F+H+       I KS  AS PELNFLGLP+R  E+ECP+YMRNGSC YG 
Sbjct:   171 GGCKYGETCRFNHT-------IPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGA 223

Query:   291 DCRFNHPDPVADEGSD 306
             +C+FNHPDP    G+D
Sbjct:   224 ECKFNHPDPTTIGGTD 239

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 74/255 (29%), Positives = 108/255 (42%)

Query:    50 GNGDSQGTKHEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQ 109
             G+ D+ G    YP R    DC +Y+RTG C+FG  C+FNHP            +G +  +
Sbjct:    28 GSDDTMGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYP-E 86

Query:   110 HLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSV-LNAFNLPIKLESKGEGLMEKTV 168
              +GQ +C+FY  TG CK G  C+F H   K+ +  SV +N  + P++             
Sbjct:    87 RIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNED--------- 137

Query:   169 QIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYH 228
                C ++ R   CK G  C+F+H   +S N L  S       S   SL         +  
Sbjct:   138 --DCSYFLRIGQCKFGGTCKFNHPQTQSTN-LMVSVRGSPVYSALQSLTGQPSYSWSRTS 194

Query:   229 LSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPI------RVHEIECPFYMR 282
               A   +  +   F+   +            S  L F  LP       R  + EC FYM+
Sbjct:   195 FVANPPRLQDPSGFASGSQGGLFSSGFHSGNSVPLGFYALPRENVFPERPGQPECQFYMK 254

Query:   283 NGSCAYGVDCRFNHP 297
              G C +G  C+F+HP
Sbjct:   255 TGDCKFGTVCKFHHP 269

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 4.1e-31, Sum P(2) = 4.1e-31
 Identities = 50/146 (34%), Positives = 75/146 (51%)

Query:    61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQ 120
             YP RP   DC +Y+RTG C+FG  C+FNHP   +        RG +  + +GQ +C++Y 
Sbjct:    37 YPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRGEYP-ERIGQPECEYYL 95

Query:   121 STGGCKHGEACRFKHSIEKSEVSKSV-LNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTE 179
              TG CK G  C+F H   K+ ++  V LN    P++             ++ C ++ RT 
Sbjct:    96 KTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSN-----------EVDCAYFLRTG 144

Query:   180 GCKHGEACRFSHSTEKSENPL-PFSG 204
              CK G  C+F+H   +  N + P SG
Sbjct:   145 HCKFGGTCKFNHPQPQPTNMMVPTSG 170

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0010313 "phytochrome binding" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0048027 "mRNA 5'-UTR binding" evidence=IPI

TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 4.8e-26, Sum P(2) = 4.8e-26
 Identities = 76/256 (29%), Positives = 113/256 (44%)

Query:    60 EYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFY 119
             EYP RP   DCP+Y++T  CK+G  CKFNHP R +     E +    + +   +  C FY
Sbjct:   221 EYPERPGEPDCPYYIKTQRCKYGSKCKFNHP-REEAAVSVETQDS--LPERPSEPMCTFY 277

Query:   120 QSTGGCKHGEACRFKH--SIE----KSEVSKSV-L----NAFNLPI-----KLESKGEGL 163
               TG CK G +C+F H   I+      ++  SV L    +A N P       L    +GL
Sbjct:   278 MKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNPHVTFTPALYHNSKGL 337

Query:   164 MEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLI 223
               ++ ++ C FY +T  CK+G  CR++H    +  P   +G N        SLV      
Sbjct:   338 PVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQA-AGVNY-------SLVS----- 384

Query:   224 GCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGL--PIRVHEIECPFYM 281
                           N+   +     P T   ++    P L  +    P R  + EC +YM
Sbjct:   385 -------------SNTANLNLGLVTPATSFYQT-LTQPTLGVISATYPQRPGQSECDYYM 430

Query:   282 RNGSCAYGVDCRFNHP 297
             + G C +G  C+F+HP
Sbjct:   431 KTGECKFGERCKFHHP 446

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0003723 "RNA binding" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
 Identities = 65/212 (30%), Positives = 103/212 (48%)

Query:   160 GEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEM 219
             GE   E+  +  C +Y RT  C +G  CRF+H  ++        G  G    + G+L E 
Sbjct:    48 GESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGA---VIGGVRG----EAGALPER 100

Query:   220 TGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPF 279
              G   C++ +  G CK+G SCK+ H    P+        A   L++LG P+R  E EC +
Sbjct:   101 MGHPVCQHFMRTGTCKFGASCKYHH----PRQGGGGGSVAPVSLSYLGYPLRPGEKECSY 156

Query:   280 YMRNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSPDIISRKTV-PNLDNHSF- 337
             Y+R G C +G+ CRFNHP P+A +G     +   P  +   P +   +T+ P L + S  
Sbjct:   157 YLRTGQCKFGLTCRFNHPVPLAVQGPPQQPQQQQPQPQ---PQL---QTIYPTLQSQSIP 210

Query:   338 --HPHWMLKSKFNSLQGSVYPQAKAELPLSSP 367
                 + ++ ++ + L GS Y Q+    P+  P
Sbjct:   211 SSQQYGLVLTRPSFLTGS-YLQSPYGPPMVLP 241

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
 Identities = 47/133 (35%), Positives = 69/133 (51%)

Query:    61 YPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERG-GFVGQHLGQIQCKFY 119
             YP RP A DC +Y+RTG C +G  C++NHP R D   ++   R  G   +  G+  C+FY
Sbjct:    42 YPERPGAPDCAYYMRTGVCGYGNRCRYNHP-R-DRASVEATVRATGQYPERFGEPPCQFY 99

Query:   120 QSTGGCKHGEACRFKHSIEKS-EVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRT 178
               TG CK G +C+F H       +S   LN +  P++   +G+         +C +Y +T
Sbjct:   100 LKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVR---EGDN--------ECSYYLKT 148

Query:   179 EGCKHGEACRFSH 191
               CK G  C+F H
Sbjct:   149 GQCKFGITCKFHH 161

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 54/173 (31%), Positives = 86/173 (49%)

Query:   160 GEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEM 219
             GE   E+  +  C +Y RT  C +G  CRF+H      N  P  G  G++ ++ G   E 
Sbjct:    45 GETFPERPDEPDCIYYLRTGVCGYGSRCRFNHP----RNRAPVLG--GLR-TEAGEFPER 97

Query:   220 TGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASP-ELNFLGLPIRVHEIECP 278
              G   C++ +  G CK+G SCK+ H ++         +  +P  LN++G P+R  E EC 
Sbjct:    98 MGQPVCQHFMRTGTCKFGASCKYHHPRQGGG-----GDSVTPVSLNYMGFPLRPGEKECS 152

Query:   279 FYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSPDIISRKTVPN 331
             ++MR G C +G  CR++HP P   +      +    A  +  P + S+ TVP+
Sbjct:   153 YFMRTGQCKFGSTCRYHHPVPPGVQAPSQQQQQQLSAGPTMYPSLQSQ-TVPS 204

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 3.3e-21, P = 3.3e-21
 Identities = 68/212 (32%), Positives = 101/212 (47%)

Query:   216 LVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPEL-NFLGLPIRVHE 274
             L E  G   C+Y L  G CKYG +CK+ H K++          A P + N +GLP+R+ E
Sbjct:    87 LPERIGQPDCEYFLKTGACKYGPTCKYHHPKDR--------NGAQPVMFNVIGLPMRLGE 138

Query:   275 IECPFYMRNGSCAYGVDCRFNHPDPVADEG-SDPFNEASDPASR-SWSPDIISRKTVPNL 332
               CP+Y+R G+C +GV C+F+HP P  D G S  +  +S PA+   ++  +    T   L
Sbjct:   139 KPCPYYLRTGTCRFGVACKFHHPQP--DNGHSTAYGMSSFPAADLRYASGLTMMSTYGTL 196

Query:   333 DNHSFHPHWMLKSKFNSLQGSVYPQAKAELPLSSPALGNLTK-------TADTSTYHQFN 385
                   P   +    +  QG + PQ  A    +S ++ N+         +A  +     N
Sbjct:   197 PRPQV-PQSYVPILVSPSQGFLPPQGWAPYMAASNSMYNVKNQPYYSGSSASMAMAVALN 255

Query:   386 E-FPERPGEPLCDYFMKTGNCKYRSACKFHHP 416
                 E   +P C +FM TG CKY   CK+ HP
Sbjct:   256 RGLSESSDQPECRFFMNTGTCKYGDDCKYSHP 287

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 24/42 (57%), Positives = 30/42 (71%)

Query:   386 EFPERPGEPLCDYFMKTGNCKYRSACKFHHPKNGDGKSPVCT 427
             +FPERPGEP C Y+++TGNC  +  CK+HHPKN     P CT
Sbjct:     5 KFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCT 46

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-990806-20 cth1 "cth1" [Danio rerio (taxid:7955)]

 Score = 97 (39.2 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
 Identities = 35/165 (21%), Positives = 64/165 (38%)

Query:   223 IGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKA-SPELNFLGLPIRVHEIECPFYM 281
             + C+   + G C +GN C F H +   ++   + E+   P         +     C  + 
Sbjct:   137 VPCRTFRAFGVCPFGNRCHFLHVEGGSESDGAEEEQTWQPPSQ--SQEWKPRGALCRTFS 194

Query:   282 RNGSCAYGVDCRFNHPDPVADEGSDPFNEASDPASRSWSPDIISRKTVPNLDNHSFHPHW 341
               G C YG  CRF H  P   +G +  N  S      W   + +  ++  + +    P  
Sbjct:   195 AFGFCLYGTRCRFQHGLPNTIKGHNA-NHTS------WPQQMTNGGSISPISDTCTSPSP 247

Query:   342 MLKSKFNSLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQFNE 386
                S  ++L   VYP +    P++ P++  +   A T +    N+
Sbjct:   248 PSSSPTSALPSPVYPDSSG--PITPPSVEAVANNAFTFSSQHLND 290

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015900001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (478 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	428
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	1e-06
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	6e-05
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	1e-04
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	0.002
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	0.003
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.003
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	0.004

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 391 PGEPLCDYFMKTGNCKYRSACKFHHPK 417
               LC +F +TG CKY   CKF H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 68 EDCPFYLRTGYCKFGFCCKFNHPV 91
          E C F+ RTG CK+G  CKF H  
Sbjct: 4  ELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 276 ECPFYMRNGSCAYGVDCRFNHPD 298
            C F+ R G+C YG  C+F H  
Sbjct: 5   LCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 35.2 bits (82), Expect = 0.002
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 116 CKFYQSTGGCKHGEACRFKHS 136
           C+F+  TG CK+G+ C+F H 
Sbjct: 6   CRFFSRTGTCKYGDRCKFAHG 26

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 225 CKYHLSAGGCKYGNSCKFSHSK 246
           C++    G CKYG+ CKF+H +
Sbjct: 6   CRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 34.5 bits (80), Expect = 0.003
 Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 390 RPGEPLCDYFMKTGNCKYRSACKFHHPK 417
           +    LC +F K G C     CKF HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 10/21 (47%), Positives = 16/21 (76%)

Query: 172 CKFYQRTEGCKHGEACRFSHS 192
           C+F+ RT  CK+G+ C+F+H 
Sbjct: 6   CRFFSRTGTCKYGDRCKFAHG 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	428
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.63
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.55
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.44
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.42
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.4
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	99.18
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.0
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.81
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.75
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.64
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.58
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.56
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.42
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.2
KOG4791	667	consensus Uncharacterized conserved protein [Funct	98.18
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.12
KOG4791	667	consensus Uncharacterized conserved protein [Funct	98.04
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	97.72
smart00356	27	ZnF_C3H1 zinc finger.	97.48
smart00356	27	ZnF_C3H1 zinc finger.	97.39
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	97.33
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	97.1
KOG1763	343	consensus Uncharacterized conserved protein, conta	96.91
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.89
KOG1763	343	consensus Uncharacterized conserved protein, conta	96.89
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	96.58
KOG2333	614	consensus Uncharacterized conserved protein [Gener	96.43
KOG2185	486	consensus Predicted RNA-processing protein, contai	95.99
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.87
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.81
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	95.34
KOG2333	614	consensus Uncharacterized conserved protein [Gener	95.18
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	95.04
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	92.94
COG5152	259	Uncharacterized conserved protein, contains RING a	91.96
COG5152	259	Uncharacterized conserved protein, contains RING a	91.69
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	84.39
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	84.13
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	83.14
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	82.88

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.63  E-value=4.1e-15  Score=149.87  Aligned_cols=117  Identities=32%  Similarity=0.649  Sum_probs=93.3

Q ss_pred             ccCcccccCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCC-CCCCCcCCCCC
Q 014215          170 IQCKFYQRTEGCKHGEACRFSHST-EKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKY-GNSCKFSHSKE  247 (428)
Q Consensus       170 ~~C~~f~~~g~C~~G~~C~f~H~~-~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~-G~~C~f~H~~~  247 (428)
                      ..|.+|.+.+.|.+++.|++.|+. ........        .......+++.++++|++|.+.|.|++ |..|+|+|...
T Consensus        87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~--------~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~  158 (332)
T KOG1677|consen   87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVR--------RSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLE  158 (332)
T ss_pred             cccccccccCCCCCCCCCCccCcccccccCCcc--------ccccccCcccccCCcceeeecCccccccCchhhhcCCcc
Confidence            689999999999999999999996 22111100        012234567789999999999999999 99999999987


Q ss_pred             CcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCCcc
Q 014215          248 KPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVAD  302 (428)
Q Consensus       248 ~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~~  302 (428)
                      .....        ..++..+.+.+.++++|.+|+++|.|+||.+|+|.|+.....
T Consensus       159 e~r~~--------~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~  205 (332)
T KOG1677|consen  159 ELRLP--------SSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR  205 (332)
T ss_pred             ccccc--------ccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence            64320        035678889999999999999999999999999999988543

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.55  E-value=5.7e-14  Score=141.58  Aligned_cols=125  Identities=33%  Similarity=0.626  Sum_probs=96.4

Q ss_pred             CCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCC-CCCCCcccCC
Q 014215           59 HEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKH-GEACRFKHSI  137 (428)
Q Consensus        59 ~~~p~r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~-G~~C~f~H~~  137 (428)
                      ..|+++.....|.++.+++.|.++..|+|.|+..+.+............++++++.+|++|.+.|.|++ |++|+|.|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~  157 (332)
T KOG1677|consen   78 SPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGL  157 (332)
T ss_pred             CcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCc
Confidence            448888877899999999999999999999997444332211112335567899999999999999999 9999999988


Q ss_pred             CcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCC
Q 014215          138 EKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEK  195 (428)
Q Consensus       138 ~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~  195 (428)
                      .......            .......+.+.++.+|.+|+++|.|+||.+|+|.|....
T Consensus       158 ~e~r~~~------------~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~  203 (332)
T KOG1677|consen  158 EELRLPS------------SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPE  203 (332)
T ss_pred             ccccccc------------cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcc
Confidence            8753210            001123344567899999999999999999999999863

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.44  E-value=5.3e-14  Score=131.29  Aligned_cols=134  Identities=28%  Similarity=0.607  Sum_probs=113.7

Q ss_pred             CCCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccccc
Q 014215           65 PFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSK  144 (428)
Q Consensus        65 ~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~  144 (428)
                      |....|+||...|.|.+|..|+|.|...+                   +.+|..|+ .|.|...+.|.++|.....    
T Consensus       204 psavycryynangicgkgaacrfvheptr-------------------kticpkfl-ngrcnkaedcnlsheldpr----  259 (377)
T KOG1492|consen  204 PSAVYCRYYNANGICGKGAACRFVHEPTR-------------------KTICPKFL-NGRCNKAEDCNLSHELDPR----  259 (377)
T ss_pred             CceeEEEEecCCCcccCCceeeeeccccc-------------------cccChHHh-cCccCchhcCCcccccCcc----
Confidence            44567999999999999999999996654                   57899998 9999999999999998763    


Q ss_pred             cccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccc
Q 014215          145 SVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG  224 (428)
Q Consensus       145 ~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~  224 (428)
                                             ..+.|+||+-| .|.. .+|+|.|..-..                        ..++
T Consensus       260 -----------------------ripacryfllg-kcnn-pncryvhihyse------------------------napi  290 (377)
T KOG1492|consen  260 -----------------------RIPACRYFLLG-KCNN-PNCRYVHIHYSE------------------------NAPI  290 (377)
T ss_pred             -----------------------ccchhhhhhhc-cCCC-CCceEEEEeecC------------------------CCce
Confidence                                   24689999998 8975 899999996432                        2378


Q ss_pred             cccccCCCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCCc
Q 014215          225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVA  301 (428)
Q Consensus       225 C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~  301 (428)
                      |.-|.+.|+|..|..|+-.|..                             .|..|..+|+|. ...|...|+....
T Consensus       291 cfefakygfcelgtscknqhil-----------------------------qctdyamfgscn-npqcslyhgavsa  337 (377)
T KOG1492|consen  291 CFEFAKYGFCELGTSCKNQHIL-----------------------------QCTDYAMFGSCN-NPQCSLYHGAVSA  337 (377)
T ss_pred             eeeehhcceeccccccccceee-----------------------------eecchhhhcCCC-CCcceeecceecc
Confidence            9999999999999999999965                             488898899998 7899999996543

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.42  E-value=1.3e-13  Score=137.60  Aligned_cols=151  Identities=23%  Similarity=0.413  Sum_probs=119.2

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCccccccc
Q 014215           66 FAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKS  145 (428)
Q Consensus        66 ~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~  145 (428)
                      ++.+|+||++ |.|+.||.|.|+|..+.                 .+++.|.||...|.|.+|..|.|.|.....     
T Consensus        76 ~~~vcK~~l~-glC~kgD~C~Flhe~~~-----------------~k~rec~ff~~~g~c~~~~~c~y~h~dpqt-----  132 (325)
T KOG1040|consen   76 GKVVCKHWLR-GLCKKGDQCEFLHEYDL-----------------TKMRECKFFSLFGECTNGKDCPYLHGDPQT-----  132 (325)
T ss_pred             Cceeehhhhh-hhhhccCcCcchhhhhh-----------------cccccccccccccccccccCCcccCCChhh-----
Confidence            5678999995 99999999999998843                 357789999999999999999999987531     


Q ss_pred             ccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCcccc
Q 014215          146 VLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGC  225 (428)
Q Consensus       146 ~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C  225 (428)
                                            ....|.+|.++ .|..|..|++.|...                            ++|
T Consensus       133 ----------------------~~k~c~~~~~g-~c~~g~~c~~~h~~~----------------------------~~c  161 (325)
T KOG1040|consen  133 ----------------------AIKKCKWYKEG-FCRGGPSCKKRHERK----------------------------VLC  161 (325)
T ss_pred             ----------------------hhhccchhhhc-cCCCcchhhhhhhcc----------------------------cCC
Confidence                                  23589999998 999999999999964                            578


Q ss_pred             ccccCCCCCCCCCC-CCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCC
Q 014215          226 KYHLSAGGCKYGNS-CKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPV  300 (428)
Q Consensus       226 ~~f~~~G~C~~G~~-C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~  300 (428)
                      ..|+ .|+|..|.. |.+.|........        ........+-+.+.+++.++.. ..+.....|.+.+....
T Consensus       162 ~~y~-~gfC~~g~q~c~~~hp~~~~~~~--------~~~~~q~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~  227 (325)
T KOG1040|consen  162 PPYN-AGFCPKGPQRCDMLHPEFQQPPF--------HQGSVQHPPQRQSQQPGKISGE-EKIHKLLQDKQLPQQHE  227 (325)
T ss_pred             Cchh-hhhccCCCCcccccCCCCCCChh--------hccccCCCCCCCCcCccccccc-cccchhhhhhhhhHHHH
Confidence            8888 499999988 9999988653211        1111223444566788888866 88888999999877654

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.40  E-value=4.2e-13  Score=133.92  Aligned_cols=140  Identities=31%  Similarity=0.669  Sum_probs=114.8

Q ss_pred             CCCCCcccccc-CCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccccc
Q 014215           66 FAEDCPFYLRT-GYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSK  144 (428)
Q Consensus        66 ~~~~C~~~~r~-G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~  144 (428)
                      +...|.++.+. -.|.+|..|...|...+.               ..++++||||+ .|.|+.|+.|.|+|++..     
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~vcK~~l-~glC~kgD~C~Flhe~~~-----  102 (325)
T KOG1040|consen   44 GRATCEFNESREKPCERGPICPKSHNDVSD---------------SRGKVVCKHWL-RGLCKKGDQCEFLHEYDL-----  102 (325)
T ss_pred             ccchhcccccCCCCccCCCCCccccCCccc---------------cCCceeehhhh-hhhhhccCcCcchhhhhh-----
Confidence            34568877632 578889999999977531               23578999999 999999999999999843     


Q ss_pred             cccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccc
Q 014215          145 SVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIG  224 (428)
Q Consensus       145 ~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~  224 (428)
                                            ++++.|.||...|.|..|.+|.|.|.....                        ....
T Consensus       103 ----------------------~k~rec~ff~~~g~c~~~~~c~y~h~dpqt------------------------~~k~  136 (325)
T KOG1040|consen  103 ----------------------TKMRECKFFSLFGECTNGKDCPYLHGDPQT------------------------AIKK  136 (325)
T ss_pred             ----------------------cccccccccccccccccccCCcccCCChhh------------------------hhhc
Confidence                                  235699999999999999999999997532                        2368


Q ss_pred             cccccCCCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCC-CccCCCCCCc
Q 014215          225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVD-CRFNHPDPVA  301 (428)
Q Consensus       225 C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~-C~F~H~~~~~  301 (428)
                      |.+|.. |+|..|..|++.|...                           +.|+.|+. |.|..|.. |.+.|+..-.
T Consensus       137 c~~~~~-g~c~~g~~c~~~h~~~---------------------------~~c~~y~~-gfC~~g~q~c~~~hp~~~~  185 (325)
T KOG1040|consen  137 CKWYKE-GFCRGGPSCKKRHERK---------------------------VLCPPYNA-GFCPKGPQRCDMLHPEFQQ  185 (325)
T ss_pred             cchhhh-ccCCCcchhhhhhhcc---------------------------cCCCchhh-hhccCCCCcccccCCCCCC
Confidence            999885 9999999999999762                           47999966 99999998 9999998654

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=2.1e-11  Score=122.61  Aligned_cols=134  Identities=17%  Similarity=0.258  Sum_probs=96.7

Q ss_pred             CCCCccccccccCCCCCCCccCCCCCCccCCCCCCCCCC--------CCc--------c-cCCCcccccCCCCCCCCCCC
Q 014215          274 EIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPFNEAS--------DPA--------S-RSWSPDIISRKTVPNLDNHS  336 (428)
Q Consensus       274 e~~C~~y~~~G~C~~G~~C~F~H~~~~~~~g~~p~~~~~--------~~~--------~-~~w~~~~~s~~~~p~~~~~~  336 (428)
                      ..+|+|. +.|.|.+|..|.+.|..-+.+++..-+.+..        ..+        + .+.+.++ +...++|+++..
T Consensus        93 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~~~~~~e~~~a~~~-s~~k~CGICme~  170 (344)
T KOG1039|consen   93 TQENPYS-NHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCALSSAMERSFALQK-SSEKECGICMET  170 (344)
T ss_pred             cccCccc-cccccccCCcccccccccccccccccccchhHHHHhhhhcccccccchHhhhhccCcCc-cccccceehhhh
Confidence            4689988 4699999999999998888887765332111        001        1 1122233 345677777653


Q ss_pred             CC-------Cccccc-----------CCCC---------cCCccccCCCCCCCCCCccccCCCCccCCCccccc-cccCC
Q 014215          337 FH-------PHWMLK-----------SKFN---------SLQGSVYPQAKAELPLSSPALGNLTKTADTSTYHQ-FNEFP  388 (428)
Q Consensus       337 ~~-------~~~~~~-----------~~~~---------~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~q-~~~~p  388 (428)
                      -+       ..+||+           .+|+         ...||+||+.+.+++||.+|+....      ++++ +..|.
T Consensus       171 i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t~~------~k~~li~e~~  244 (344)
T KOG1039|consen  171 INEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVETKE------EKQKLIEEYE  244 (344)
T ss_pred             ccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeeecc------cccccHHHHH
Confidence            22       234554           6888         5579999999999999999987642      2233 67888


Q ss_pred             CCCCCccchhh-hccCCCCCCCCCcCCC
Q 014215          389 ERPGEPLCDYF-MKTGNCKYRSACKFHH  415 (428)
Q Consensus       389 ~r~~~~~C~~~-~~~g~C~fg~~C~y~H  415 (428)
                      +.++...|+|| ...|.||||..|.|.|
T Consensus       245 ~~~s~~~c~yf~~~~g~cPf~s~~~y~h  272 (344)
T KOG1039|consen  245 AEMSAKDCKYFSQGLGSCPFGSKCFYKH  272 (344)
T ss_pred             HHhhccchhhhcCCCCCCCCCCcccccc
Confidence            89999999999 6679999999999999

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.00  E-value=2.2e-10  Score=107.22  Aligned_cols=114  Identities=25%  Similarity=0.664  Sum_probs=95.6

Q ss_pred             CccccccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCC
Q 014215          109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACR  188 (428)
Q Consensus       109 ~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~  188 (428)
                      ..+....||||...|.|-.|..|+|.|....                             ..+|.-|+.| .|...++|.
T Consensus       202 nspsavycryynangicgkgaacrfvheptr-----------------------------kticpkflng-rcnkaedcn  251 (377)
T KOG1492|consen  202 NSPSAVYCRYYNANGICGKGAACRFVHEPTR-----------------------------KTICPKFLNG-RCNKAEDCN  251 (377)
T ss_pred             CCCceeEEEEecCCCcccCCceeeeeccccc-----------------------------cccChHHhcC-ccCchhcCC
Confidence            3456788999999999999999999998764                             2489999998 999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCC
Q 014215          189 FSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGL  268 (428)
Q Consensus       189 f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~  268 (428)
                      .+|..+.                        ...+.|+||+ .|.|.. .+|+|.|.-...                   
T Consensus       252 lsheldp------------------------rripacryfl-lgkcnn-pncryvhihyse-------------------  286 (377)
T KOG1492|consen  252 LSHELDP------------------------RRIPACRYFL-LGKCNN-PNCRYVHIHYSE-------------------  286 (377)
T ss_pred             cccccCc------------------------cccchhhhhh-hccCCC-CCceEEEEeecC-------------------
Confidence            9999753                        2357899999 599986 689999975422                   


Q ss_pred             CCCCCCCCCccccccccCCCCCCCccCCCCCCc
Q 014215          269 PIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVA  301 (428)
Q Consensus       269 P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~  301 (428)
                          ..++|.-|.+.|+|..|..|+-.|...|.
T Consensus       287 ----napicfefakygfcelgtscknqhilqct  315 (377)
T KOG1492|consen  287 ----NAPICFEFAKYGFCELGTSCKNQHILQCT  315 (377)
T ss_pred             ----CCceeeeehhcceeccccccccceeeeec
Confidence                23589999999999999999999998875

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.81  E-value=2.5e-08  Score=97.85  Aligned_cols=147  Identities=24%  Similarity=0.408  Sum_probs=111.3

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccccccc
Q 014215           67 AEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSV  146 (428)
Q Consensus        67 ~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~  146 (428)
                      +..|.+++..+.+....+|++.|.....                ...++|++|+ .|.|+.|..|.|+|...-..     
T Consensus        74 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~----------------~s~V~c~~~~-~g~c~s~~~c~~lh~~d~~~-----  131 (285)
T COG5084          74 TVACISRNFNSIRGSRLSTPNNHVNPVL----------------SSSVVCKFFL-RGLCKSGFSCEFLHEYDLRS-----  131 (285)
T ss_pred             ccccccccccCCccccccCCccccCccc----------------cCCcccchhc-cccCcCCCccccccCCCccc-----
Confidence            4558888866666666689999976542                3467999998 99999999999999887531     


Q ss_pred             cccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccc
Q 014215          147 LNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCK  226 (428)
Q Consensus       147 ~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~  226 (428)
                                          ..+..|++|...|.|..|..|.|.|.++..                        ....|.
T Consensus       132 --------------------s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~------------------------~~~~~~  167 (285)
T COG5084         132 --------------------SQGPPCRSFSLKGSCSSGPSCGYSHIDPDS------------------------FAGNCD  167 (285)
T ss_pred             --------------------ccCCCcccccccceeccCCCCCccccCccc------------------------cccccc
Confidence                                124689999777799999999999998532                        124577


Q ss_pred             cccC--CCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCC-------------
Q 014215          227 YHLS--AGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVD-------------  291 (428)
Q Consensus       227 ~f~~--~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~-------------  291 (428)
                      +|..  .+.|..|..|++.|.......              .       ...|..|+. ++|..|..             
T Consensus       168 ~~~~~~~~f~p~g~~c~~~H~~~~~~~--------------~-------~~p~~~y~~-~fsP~g~~~~~~~~~~~~~~~  225 (285)
T COG5084         168 QYSGATYGFCPLGASCKFSHTLKRVSY--------------G-------SSPCGNYTP-PFSPPGTPSESVSSWGYGKGT  225 (285)
T ss_pred             ccCcccccccCCCCccccccccccccc--------------c-------ccccccCcC-CcCCCCCCccccccccccccc
Confidence            6664  699999999999998753211              0       116888844 88888888             


Q ss_pred             -CccCCCCCCc
Q 014215          292 -CRFNHPDPVA  301 (428)
Q Consensus       292 -C~F~H~~~~~  301 (428)
                       |.+.|+..-.
T Consensus       226 ~~~~~~ps~~~  236 (285)
T COG5084         226 SCSLSHPSLNI  236 (285)
T ss_pred             cccCCCccccC
Confidence             9999997654

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.75  E-value=4.6e-08  Score=95.34  Aligned_cols=200  Identities=18%  Similarity=0.201  Sum_probs=129.3

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccc-cc
Q 014215           66 FAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEV-SK  144 (428)
Q Consensus        66 ~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~-s~  144 (428)
                      .++.|.--...+.|.+++.|.|+|.......        .....+.+++-|..|+..|.|.++.+|-|.|-...... .+
T Consensus       114 kt~~l~ss~~~~~~~~p~~n~fahs~~issl--------~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~  185 (351)
T COG5063         114 KTEMLRSSTEIPYCRYPDKNPFAHSKAISSL--------AQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQP  185 (351)
T ss_pred             cchhhhccccccccccCCCCcCCCccccccc--------cccCccccccceeEEecCCccccccccccccccccccCcch
Confidence            3556665544599999999999998876532        23445778889999999999999999999885543221 00


Q ss_pred             ---ccc----ccCCCCcccccc--------------ccCccccccCccCcccccCCCCCC---CCCCCCC---CCCCCCC
Q 014215          145 ---SVL----NAFNLPIKLESK--------------GEGLMEKTVQIQCKFYQRTEGCKH---GEACRFS---HSTEKSE  197 (428)
Q Consensus       145 ---~~~----~~~~~p~~~~~~--------------~~~~~e~~~~~~C~~f~~~g~C~~---G~~C~f~---H~~~~~~  197 (428)
                         ...    +...+++.+++.              ...+ -+....+|.-|.+.|.|.+   |+.|.|+   |-.... 
T Consensus       186 l~~rkpks~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L-~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l-  263 (351)
T COG5063         186 LSQRKPKSGKNCTSYTLGKESDAHPHDELIYQKQEQNKPL-YKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNEL-  263 (351)
T ss_pred             hhccCcccCcCccccccccccccCchhhhhhhhhhccchh-hcCCHHHhhccCcCCCCccccccccccccccccccccc-
Confidence               000    011111111100              0001 1112367999999999999   9999999   763211 


Q ss_pred             CCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCC
Q 014215          198 NPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIEC  277 (428)
Q Consensus       198 ~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C  277 (428)
                                 +.   ...-...++.+|..|.+.|+|++|.+|.|.|..+..-.      ..  +....|+    ..-.|
T Consensus       264 -----------~~---k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie------~~--~~~~~~y----~~~~c  317 (351)
T COG5063         264 -----------KS---KKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDIE------MY--EEASLGY----LDGPC  317 (351)
T ss_pred             -----------cc---cccccccccCCccchhhcccCccccccccccCChhhcc------cc--ccccccc----ccccc
Confidence                       00   00011235678999999999999999999998764311      00  0001111    13479


Q ss_pred             ccccccccCCCCCCCccCCCCCCc
Q 014215          278 PFYMRNGSCAYGVDCRFNHPDPVA  301 (428)
Q Consensus       278 ~~y~~~G~C~~G~~C~F~H~~~~~  301 (428)
                      +-++++|.|.+|.+|.|.|.+...
T Consensus       318 rt~~~~g~~p~g~~~c~~~dkkn~  341 (351)
T COG5063         318 RTRAKGGAFPSGGAVCKSFDKKNL  341 (351)
T ss_pred             ccccccCccCCCCchhhccccchh
Confidence            999999999999999999987643

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.64  E-value=7.5e-08  Score=94.57  Aligned_cols=117  Identities=28%  Similarity=0.572  Sum_probs=90.4

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCccccccc
Q 014215           66 FAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKS  145 (428)
Q Consensus        66 ~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~  145 (428)
                      ...+|++|++ |+|+.|..|.|+|..+...              . .+..|++|...|.|..|..|.+.|.+...     
T Consensus       103 s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~--------------s-~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~-----  161 (285)
T COG5084         103 SSVVCKFFLR-GLCKSGFSCEFLHEYDLRS--------------S-QGPPCRSFSLKGSCSSGPSCGYSHIDPDS-----  161 (285)
T ss_pred             CCcccchhcc-ccCcCCCccccccCCCccc--------------c-cCCCcccccccceeccCCCCCccccCccc-----
Confidence            4568999995 9999999999999987652              1 36789999779999999999999987432     


Q ss_pred             ccccCCCCccccccccCccccccCccCccccc--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCcc
Q 014215          146 VLNAFNLPIKLESKGEGLMEKTVQIQCKFYQR--TEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLI  223 (428)
Q Consensus       146 ~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~--~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~  223 (428)
                                            ....|.+|.+  .+.|..|..|++.|...+..                      .+..
T Consensus       162 ----------------------~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~~~----------------------~~~~  197 (285)
T COG5084         162 ----------------------FAGNCDQYSGATYGFCPLGASCKFSHTLKRVS----------------------YGSS  197 (285)
T ss_pred             ----------------------ccccccccCcccccccCCCCcccccccccccc----------------------cccc
Confidence                                  2357888885  45999999999999976421                      1112


Q ss_pred             ccccccCCCCCCCCCC--------------CCcCCCCCC
Q 014215          224 GCKYHLSAGGCKYGNS--------------CKFSHSKEK  248 (428)
Q Consensus       224 ~C~~f~~~G~C~~G~~--------------C~f~H~~~~  248 (428)
                      .|..++ .+.|..|..              |.+.|+...
T Consensus       198 p~~~y~-~~fsP~g~~~~~~~~~~~~~~~~~~~~~ps~~  235 (285)
T COG5084         198 PCGNYT-PPFSPPGTPSESVSSWGYGKGTSCSLSHPSLN  235 (285)
T ss_pred             ccccCc-CCcCCCCCCccccccccccccccccCCCcccc
Confidence            677776 477777776              888887653

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.58  E-value=5.4e-08  Score=96.04  Aligned_cols=197  Identities=23%  Similarity=0.418  Sum_probs=112.5

Q ss_pred             CCCccccccCCCCCCCC-CCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccccccc
Q 014215           68 EDCPFYLRTGYCKFGFC-CKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSV  146 (428)
Q Consensus        68 ~~C~~~~r~G~C~~G~~-C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~  146 (428)
                      ++|+-|+| +.|++|+. |||+|+.....+            +.-+-..|..|+ .|.|.+ ++|+|.|.....+.....
T Consensus        38 eVCReF~r-n~C~R~d~~CkfaHP~~~~~V------------~~g~v~aC~Ds~-kgrCsR-~nCkylHpp~hlkdql~i  102 (331)
T KOG2494|consen   38 EVCREFLR-NTCSRGDRECKFAHPPKNCQV------------SNGRVIACFDSQ-KGRCSR-ENCKYLHPPQHLKDQLKI  102 (331)
T ss_pred             HHHHHHHh-ccccCCCccccccCCCCCCCc------------cCCeEEEEeccc-cCccCc-ccceecCCChhhhhhhhh
Confidence            68999996 99999999 999999874421            112346799998 899998 679999998765432111


Q ss_pred             cccCCCCcccc--ccccCccccccCccCc--ccccCCCCCCCC-CCCCCCCCCCC---CCCC------C--CCCCCCCc-
Q 014215          147 LNAFNLPIKLE--SKGEGLMEKTVQIQCK--FYQRTEGCKHGE-ACRFSHSTEKS---ENPL------P--FSGANGMK-  209 (428)
Q Consensus       147 ~~~~~~p~~~~--~~~~~~~e~~~~~~C~--~f~~~g~C~~G~-~C~f~H~~~~~---~~p~------~--~~~~~~~~-  209 (428)
                      -..+.+-+.+.  +...........++|.  .|..+ .|.-|. .|+|.|.....   ..++      +  +.+..++. 
T Consensus       103 ngrn~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~~~-~~~~g~~~~s~~~y~~~~Pg~~vp~~~~p~~~~~~~g~p~v~~  181 (331)
T KOG2494|consen  103 NGRNNLILQKTAAAMLAQQMQGPGTPICSVPMFATG-PCLGGNTACSYWPYLPPVPGGLVPADGLPTTPVFVPGGPGVPG  181 (331)
T ss_pred             cccccHHHHHHHHhhhcccccCCCcccccccccccc-ccccCCCccccccccCCCCCCCCCCcCCCCCccccCCCCcccc
Confidence            11111111110  0000000002457888  67766 777664 59999987621   0000      0  00111110 


Q ss_pred             --ccCCCCcccccCccccccccCCCCCCCC-CCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccC
Q 014215          210 --ESKGGSLVEMTGLIGCKYHLSAGGCKYG-NSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSC  286 (428)
Q Consensus       210 --~s~~~~~per~~~~~C~~f~~~G~C~~G-~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C  286 (428)
                        ...........+.++|+. . .|.|.++ ..|.|+|........     +.        .+   -...|..+.+ |.|
T Consensus       182 ~~~~~~~k~~r~~~~e~~~~-~-~gn~~r~e~d~~f~~~~k~~~~~-----s~--------~~---t~~~~~~~t~-~~~  242 (331)
T KOG2494|consen  182 PGLVGGQKLLRSDRLEVCRE-Q-RGNCRRGEQDAQFAHPAKSIMID-----SN--------DN---TVEVCLRYTK-GRC  242 (331)
T ss_pred             cccccccccccCCCCCCCcc-c-ccccccchhHHHHhhhhhhhhcc-----cC--------CC---cchhcccccc-cee
Confidence              001111222345678888 3 5888888 669999987532210     00        00   1135888844 888


Q ss_pred             CCCCCCccCCCCCC
Q 014215          287 AYGVDCRFNHPDPV  300 (428)
Q Consensus       287 ~~G~~C~F~H~~~~  300 (428)
                      - -++|++-|..-.
T Consensus       243 ~-~en~~~~~~~~h  255 (331)
T KOG2494|consen  243 E-TENCKYFHAPAH  255 (331)
T ss_pred             c-hhcccccCchHH
Confidence            7 788988887643

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.56  E-value=6.1e-08  Score=95.66  Aligned_cols=174  Identities=17%  Similarity=0.215  Sum_probs=93.8

Q ss_pred             ccccccccCCCCCCCCCC-CCcCCCCCCcchhhhcccCCCcccccCCCCCCCC-CCCCccccccccCCCCCCCccCCCCC
Q 014215          222 LIGCKYHLSAGGCKYGNS-CKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVH-EIECPFYMRNGSCAYGVDCRFNHPDP  299 (428)
Q Consensus       222 ~~~C~~f~~~G~C~~G~~-C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~-e~~C~~y~~~G~C~~G~~C~F~H~~~  299 (428)
                      ..+||.|++ |.|.+|+. |||.|+......                   .-+ -..|.+|++ |.|. .++|||.|+..
T Consensus        37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~V-------------------~~g~v~aC~Ds~k-grCs-R~nCkylHpp~   94 (331)
T KOG2494|consen   37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQV-------------------SNGRVIACFDSQK-GRCS-RENCKYLHPPQ   94 (331)
T ss_pred             HHHHHHHHh-ccccCCCccccccCCCCCCCc-------------------cCCeEEEEecccc-CccC-cccceecCCCh
Confidence            368999997 99999999 999999864321                   111 246999977 9999 57799999987


Q ss_pred             Cc-----cCCCCCCCCCCCC-cccCCCcccccCCCCCCCCCC--CCCCcccccCCCCcCCcccc-CCCCCCCCCCccccC
Q 014215          300 VA-----DEGSDPFNEASDP-ASRSWSPDIISRKTVPNLDNH--SFHPHWMLKSKFNSLQGSVY-PQAKAELPLSSPALG  370 (428)
Q Consensus       300 ~~-----~~g~~p~~~~~~~-~~~~w~~~~~s~~~~p~~~~~--~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~s~~~~~  370 (428)
                      .+     +.|..+++-+... ++...+. ..+-..+.++.+-  ..+...+--=.+++|..++- +-....++|++..+.
T Consensus        95 hlkdql~ingrn~l~lq~~~aA~~~q~~-~~~g~Pi~~v~~f~~~~~~~g~~~~s~~~y~~~~Pg~~vp~~~~p~~~~~~  173 (331)
T KOG2494|consen   95 HLKDQLKINGRNNLILQKTAAAMLAQQM-QGPGTPICSVPMFATGPCLGGNTACSYWPYLPPVPGGLVPADGLPTTPVFV  173 (331)
T ss_pred             hhhhhhhhcccccHHHHHHHHhhhcccc-cCCCccccccccccccccccCCCccccccccCCCCCCCCCCcCCCCCcccc
Confidence            54     4565554311100 0000000 0000000000000  00011111113455665330 222334445444333


Q ss_pred             CCCccCCCccccccccCCCCCCCccchhhhccCCCCCCCC-CcCCCCCCCC
Q 014215          371 NLTKTADTSTYHQFNEFPERPGEPLCDYFMKTGNCKYRSA-CKFHHPKNGD  420 (428)
Q Consensus       371 ~~~~~~~~~~~~q~~~~p~r~~~~~C~~~~~~g~C~fg~~-C~y~Hp~~~~  420 (428)
                      .+..........-.+.....+..+.|+-  .+|.|-.++. |.|.||.+.+
T Consensus       174 ~g~p~v~~~~~~~~~k~~r~~~~e~~~~--~~gn~~r~e~d~~f~~~~k~~  222 (331)
T KOG2494|consen  174 PGGPGVPGPGLVGGQKLLRSDRLEVCRE--QRGNCRRGEQDAQFAHPAKSI  222 (331)
T ss_pred             CCCCcccccccccccccccCCCCCCCcc--cccccccchhHHHHhhhhhhh
Confidence            3222211111122466777778888888  6788888876 9999998665

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.42  E-value=2.8e-07  Score=89.98  Aligned_cols=104  Identities=22%  Similarity=0.348  Sum_probs=80.5

Q ss_pred             CCCccccccCCCCC---CCCCCCC---CCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCccc
Q 014215           68 EDCPFYLRTGYCKF---GFCCKFN---HPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSE  141 (428)
Q Consensus        68 ~~C~~~~r~G~C~~---G~~C~F~---H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~  141 (428)
                      .+|.-|.+.|+|++   |+.|.|+   |+..+.....        ....++++.|..|.+.|.|++|.+|.|.|......
T Consensus       231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~--------k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~i  302 (351)
T COG5063         231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK--------KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDI  302 (351)
T ss_pred             HHhhccCcCCCCccccccccccccccccccccccccc--------cccccccCCccchhhcccCccccccccccCChhhc
Confidence            68999999999999   9999999   9977654311        11247889999999999999999999999876532


Q ss_pred             ccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCC
Q 014215          142 VSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEK  195 (428)
Q Consensus       142 ~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~  195 (428)
                      .-           .+.     ..-.+....|+-++.+|.|..|.+|.++|....
T Consensus       303 e~-----------~~~-----~~~~y~~~~crt~~~~g~~p~g~~~c~~~dkkn  340 (351)
T COG5063         303 EM-----------YEE-----ASLGYLDGPCRTRAKGGAFPSGGAVCKSFDKKN  340 (351)
T ss_pred             cc-----------ccc-----ccccccccccccccccCccCCCCchhhccccch
Confidence            10           000     001234568999999999999999999998754

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.20  E-value=4.8e-07  Score=58.00  Aligned_cols=26  Identities=38%  Similarity=1.065  Sum_probs=20.8

Q ss_pred             CCccchhhhccCCCCCCCCCcCCCCC
Q 014215          392 GEPLCDYFMKTGNCKYRSACKFHHPK  417 (428)
Q Consensus       392 ~~~~C~~~~~~g~C~fg~~C~y~Hp~  417 (428)
                      +.++|++|+++|.|+||++|+|.|+.
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             ccccChhhccCCccCCCCCcCccCCC
Confidence            56789999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=1.1e-06  Score=90.29  Aligned_cols=134  Identities=20%  Similarity=0.386  Sum_probs=90.1

Q ss_pred             cccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCC
Q 014215          113 QIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHS  192 (428)
Q Consensus       113 ~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~  192 (428)
                      +..|-||+ ...|++++.|.|+|.....                          -...+|++|+.+-.|..  .|+|+|.
T Consensus         3 ~~dcyff~-ys~cKk~d~c~~rh~E~al--------------------------~n~t~C~~w~~~~~C~k--~C~YRHS   53 (667)
T KOG4791|consen    3 GEDCYFFF-YSTCKKGDSCPFRHCEAAL--------------------------GNETVCTLWQEGRCCRK--VCRYRHS   53 (667)
T ss_pred             cccchhhh-hhhhhccCcCcchhhHHHh--------------------------cCcchhhhhhhcCcccc--cccchhh
Confidence            45798998 8999999999999976542                          12468999999955664  9999999


Q ss_pred             CCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCC--CCcchhhhc-ccCCCcccccCC--
Q 014215          193 TEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSK--EKPQTYIKK-SEKASPELNFLG--  267 (428)
Q Consensus       193 ~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~--~~~~~~~~~-~~~~~~~~n~~g--  267 (428)
                      .-..                      .....+|.++.+...|.. .+|-|.|..  .+..  +.. ...+.++.....  
T Consensus        54 e~~~----------------------kr~e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg~--l~~~p~~pe~ev~~~~~S  108 (667)
T KOG4791|consen   54 EIDK----------------------KRSEIPCYWENQPTGCQK-LNCGFRHNRPPLKGV--LPTVPESPEEEVKASQLS  108 (667)
T ss_pred             HHhh----------------------hcCcccceeecCCCccCC-CccccccCCCchhhh--ccCCCCCccccccccccc
Confidence            6421                      123478999998666986 789999933  2211  100 001111110000  


Q ss_pred             -CC--CCCCCCCCccccccccCCCCCCCccCCCCCCc
Q 014215          268 -LP--IRVHEIECPFYMRNGSCAYGVDCRFNHPDPVA  301 (428)
Q Consensus       268 -~P--~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~  301 (428)
                       .+  +...-.+|-++++ |.|..++.|-|.|+.++.
T Consensus       109 Aq~~sV~~~p~P~l~~~K-~~e~~~D~~s~Lh~P~A~  144 (667)
T KOG4791|consen  109 AQQNSVQSNPSPQLRSVK-KVESSEDVPSPLHPPVAI  144 (667)
T ss_pred             CCCcccccCCchHHHHhh-hhhhhccccccCCCCccc
Confidence             00  1112357999988 999999999999998665

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.12  E-value=5.3e-07  Score=57.81  Aligned_cols=26  Identities=42%  Similarity=0.929  Sum_probs=20.8

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCC
Q 014215           66 FAEDCPFYLRTGYCKFGFCCKFNHPV   91 (428)
Q Consensus        66 ~~~~C~~~~r~G~C~~G~~C~F~H~~   91 (428)
                      ++++|++|+++|.|++|++|+|+|+.
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             ccccChhhccCCccCCCCCcCccCCC
Confidence            57889999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.04  E-value=2.5e-06  Score=87.61  Aligned_cols=134  Identities=22%  Similarity=0.394  Sum_probs=87.8

Q ss_pred             CCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccC-CCCCCCCCcccCCCcccccccc
Q 014215           68 EDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGG-CKHGEACRFKHSIEKSEVSKSV  146 (428)
Q Consensus        68 ~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~-C~~G~~C~f~H~~~~~~~s~~~  146 (428)
                      .+|.||+ ...||+++.|.|.|--.-..                .-..|++|+ .+. |+.  .|.|.|..-..      
T Consensus         4 ~dcyff~-ys~cKk~d~c~~rh~E~al~----------------n~t~C~~w~-~~~~C~k--~C~YRHSe~~~------   57 (667)
T KOG4791|consen    4 EDCYFFF-YSTCKKGDSCPFRHCEAALG----------------NETVCTLWQ-EGRCCRK--VCRYRHSEIDK------   57 (667)
T ss_pred             ccchhhh-hhhhhccCcCcchhhHHHhc----------------Ccchhhhhh-hcCcccc--cccchhhHHhh------
Confidence            4698888 69999999999999654431                246899999 555 554  99999975432      


Q ss_pred             cccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCc---ccCCCCcccc-cC
Q 014215          147 LNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFS-GANGMK---ESKGGSLVEM-TG  221 (428)
Q Consensus       147 ~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~-~~~~~~---~s~~~~~per-~~  221 (428)
                                         ++....|.++.++..|.. .+|-|+|..+......+.. ++.-+.   .+.+...+.- ..
T Consensus        58 -------------------kr~e~~CYwe~~p~gC~k-~~CgfRH~~pPLkg~l~~~p~~pe~ev~~~~~SAq~~sV~~~  117 (667)
T KOG4791|consen   58 -------------------KRSEIPCYWENQPTGCQK-LNCGFRHNRPPLKGVLPTVPESPEEEVKASQLSAQQNSVQSN  117 (667)
T ss_pred             -------------------hcCcccceeecCCCccCC-CccccccCCCchhhhccCCCCCcccccccccccCCCcccccC
Confidence                               123568999999966997 8999999764322111100 000000   0000011101 12


Q ss_pred             ccccccccCCCCCCCCCCCCcCCCCCC
Q 014215          222 LIGCKYHLSAGGCKYGNSCKFSHSKEK  248 (428)
Q Consensus       222 ~~~C~~f~~~G~C~~G~~C~f~H~~~~  248 (428)
                      ..+|-+|++ +.|..++.|-|.|++..
T Consensus       118 p~P~l~~~K-~~e~~~D~~s~Lh~P~A  143 (667)
T KOG4791|consen  118 PSPQLRSVK-KVESSEDVPSPLHPPVA  143 (667)
T ss_pred             CchHHHHhh-hhhhhccccccCCCCcc
Confidence            256888986 99999999999999854

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.72  E-value=0.0001  Score=77.41  Aligned_cols=186  Identities=23%  Similarity=0.353  Sum_probs=106.9

Q ss_pred             CCccccc-cCCCCCCCC-CCCCCCCCCccCCcccccCCCcccCccccccccccccccCCC-CCCCCCcccCCCccccccc
Q 014215           69 DCPFYLR-TGYCKFGFC-CKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCK-HGEACRFKHSIEKSEVSKS  145 (428)
Q Consensus        69 ~C~~~~r-~G~C~~G~~-C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~-~G~~C~f~H~~~~~~~s~~  145 (428)
                      +|.-|.. +|.|..|+. |-+.|-.......+      .+ -...++-.|-.=. .|.|- .+..|-|.|.....+..-.
T Consensus        78 ~~~~~~e~~~~C~~~~~~C~~~g~s~~~~e~~------~h-L~~~k~~~~~tda-~g~~~~~v~~~~~~~~~~~~r~~~~  149 (528)
T KOG1595|consen   78 YCTKYDEVTGICPDGDEHCAVLGRSVGDTERT------YH-LRYYKTLPCVTDA-RGNCVKNVLHCAFAHGPNDLRPPVE  149 (528)
T ss_pred             eecchhhccccCCCCcccchhcccccCCccee------Ee-ccccccccCcccc-CCCcccCcccccccCCccccccHHH
Confidence            4555543 599999998 99999753322110      01 1123445554333 67776 4678999998886543211


Q ss_pred             ccccCC----CCcc---cc--------ccccCccc-------------cccCccCcccccCCCCCCCCCCCCCCCCCCCC
Q 014215          146 VLNAFN----LPIK---LE--------SKGEGLME-------------KTVQIQCKFYQRTEGCKHGEACRFSHSTEKSE  197 (428)
Q Consensus       146 ~~~~~~----~p~~---~~--------~~~~~~~e-------------~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~  197 (428)
                      .+..++    ++..   ..        ..++.++.             ..++..|.   |. .|--+-.|+|.|+-....
T Consensus       150 ~l~e~~~~~~~~~~e~~~~~~~~~~~y~~Dp~~pdi~~~ys~DeFrMy~fKir~C~---R~-~shDwteCPf~HpgEkAR  225 (528)
T KOG1595|consen  150 DLLELQGGSGLPDDEPEVESKLDVTEYPEDPSWPDINGIYSSDEFRMYSFKIRRCS---RP-RSHDWTECPFAHPGEKAR  225 (528)
T ss_pred             HHHhcccccCccCCCcccccccccccccCCCCcccccccccccceEEEeeeecccC---Cc-cCCCcccCCccCCCcccc
Confidence            111111    1100   00        01112221             00223332   22 566678999999754221


Q ss_pred             CCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCC
Q 014215          198 NPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIEC  277 (428)
Q Consensus       198 ~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C  277 (428)
                      .            .....|.  +.-.+|..|.+ |.|.+|+.|.|.|...+.-            +    .|.+=....|
T Consensus       226 R------------RDPRkyh--Ys~tpCPefrk-G~C~rGD~CEyaHgvfEcw------------L----HPa~YRT~~C  274 (528)
T KOG1595|consen  226 R------------RDPRKYH--YSSTPCPEFRK-GSCERGDSCEYAHGVFECW------------L----HPARYRTRKC  274 (528)
T ss_pred             c------------CCccccc--ccCccCccccc-CCCCCCCccccccceehhh------------c----CHHHhccccc
Confidence            0            0001111  34578999986 9999999999999886532            1    2233345689


Q ss_pred             ccccccccCCCCCCCccCCCCCCc
Q 014215          278 PFYMRNGSCAYGVDCRFNHPDPVA  301 (428)
Q Consensus       278 ~~y~~~G~C~~G~~C~F~H~~~~~  301 (428)
                      ..-   |.|++ .-|.|+|.....
T Consensus       275 kDg---~~C~R-rvCfFAH~~eqL  294 (528)
T KOG1595|consen  275 KDG---GYCPR-RVCFFAHSPEQL  294 (528)
T ss_pred             cCC---CCCcc-ceEeeecChHHh
Confidence            997   89997 999999988754

>smart00356 ZnF_C3H1 zinc finger

Probab=97.48  E-value=7.1e-05  Score=47.32  Aligned_cols=25  Identities=36%  Similarity=0.950  Sum_probs=22.1

Q ss_pred             ccccccccccccCCCCCCCCCcccCC
Q 014215          112 GQIQCKFYQSTGGCKHGEACRFKHSI  137 (428)
Q Consensus       112 ~~~~C~~f~~~G~C~~G~~C~f~H~~  137 (428)
                      +..+|++| +.|.|.+|++|+|+|+.
T Consensus         3 k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        3 KTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            56789999 59999999999999973

>smart00356 ZnF_C3H1 zinc finger

Probab=97.39  E-value=0.00012  Score=46.21  Aligned_cols=24  Identities=42%  Similarity=1.090  Sum_probs=21.2

Q ss_pred             CCCCccccccccCCCCCCCccCCCC
Q 014215          274 EIECPFYMRNGSCAYGVDCRFNHPD  298 (428)
Q Consensus       274 e~~C~~y~~~G~C~~G~~C~F~H~~  298 (428)
                      +.+|++| ++|.|.+|++|+|.|..
T Consensus         4 ~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        4 TELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            4589999 77999999999999973

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=97.33  E-value=0.00046  Score=73.97  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=28.1

Q ss_pred             CCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCc
Q 014215           83 FCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK  139 (428)
Q Consensus        83 ~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~  139 (428)
                      ..|.+.|+........           ..--..|+|+.   .|. +..|.|.|+...
T Consensus       525 ~~s~s~~s~~~~~ltk-----------~k~l~~Cky~~---~Ct-~a~Ce~~HPtaa  566 (681)
T KOG3702|consen  525 PDSLSRHSEKKNELTK-----------AKILTRCKYGP---ACT-SAECEFAHPTAA  566 (681)
T ss_pred             CcchhhCccccccccc-----------ceeeccccCCC---cCC-chhhhhcCCcch
Confidence            3577888765542211           11134699998   788 799999998765

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.10  E-value=0.0005  Score=72.32  Aligned_cols=96  Identities=21%  Similarity=0.402  Sum_probs=72.0

Q ss_pred             cccccccccccccCCCCCCCCCcccCCCccccc-ccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCC
Q 014215          111 LGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVS-KSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRF  189 (428)
Q Consensus       111 ~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s-~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f  189 (428)
                      +|.+.|.    .+.|.-+-.|.|.|+....+-. +...                  ......|.-|-+| .|..|+.|-|
T Consensus       199 fKir~C~----R~~shDwteCPf~HpgEkARRRDPRky------------------hYs~tpCPefrkG-~C~rGD~CEy  255 (528)
T KOG1595|consen  199 FKIRRCS----RPRSHDWTECPFAHPGEKARRRDPRKY------------------HYSSTPCPEFRKG-SCERGDSCEY  255 (528)
T ss_pred             eeecccC----CccCCCcccCCccCCCcccccCCcccc------------------cccCccCcccccC-CCCCCCcccc
Confidence            6777887    5689999999999977654321 1100                  1245689999996 9999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCCcc
Q 014215          190 SHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQ  250 (428)
Q Consensus       190 ~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~  250 (428)
                      .|..-..                 ...|+++++..|+.-   |.|++ .-|-|+|.....+
T Consensus       256 aHgvfEc-----------------wLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR  295 (528)
T KOG1595|consen  256 AHGVFEC-----------------WLHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLR  295 (528)
T ss_pred             ccceehh-----------------hcCHHHhccccccCC---CCCcc-ceEeeecChHHhc
Confidence            9996431                 224678888999984   89999 8899999987543

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=96.91  E-value=0.00017  Score=70.44  Aligned_cols=82  Identities=24%  Similarity=0.625  Sum_probs=51.5

Q ss_pred             ccccccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccc------------cccCccccccCccCccccc
Q 014215          110 HLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLES------------KGEGLMEKTVQIQCKFYQR  177 (428)
Q Consensus       110 ~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~------------~~~~~~e~~~~~~C~~f~~  177 (428)
                      -++..+|.||. .|.|..|+.|+|+|+....+-......   ++..+..            .-.+-+-.....+|+||+.
T Consensus        89 DPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dl---y~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLe  164 (343)
T KOG1763|consen   89 DPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDL---YPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLE  164 (343)
T ss_pred             CchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhc---cccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence            46788999996 999999999999999876542211000   0000000            0000111124568999974


Q ss_pred             C------C---CCCCCC-CCCCCCCCCC
Q 014215          178 T------E---GCKHGE-ACRFSHSTEK  195 (428)
Q Consensus       178 ~------g---~C~~G~-~C~f~H~~~~  195 (428)
                      .      |   .|++|. .|.|.|-.+.
T Consensus       165 AvE~~kYGWfW~CPnGg~~C~YrHaLP~  192 (343)
T KOG1763|consen  165 AVENGKYGWFWECPNGGDKCIYRHALPE  192 (343)
T ss_pred             HHhcCCccceeECCCCCCeeeeeecCCc
Confidence            3      3   399976 7999999864

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.89  E-value=0.00054  Score=69.74  Aligned_cols=40  Identities=28%  Similarity=0.675  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCccccccccCCCCCCCccCCCCCCccCCCCCC
Q 014215          268 LPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGSDPF  308 (428)
Q Consensus       268 ~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~~~g~~p~  308 (428)
                      +|....-.+|+||+. |.|+||.+|||.|+....+....++
T Consensus       134 ~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V~lsslr~y  173 (486)
T KOG2185|consen  134 TPTHESMKPCKFFLE-GRCRFGENCRFSHGLDVPLSSLRNY  173 (486)
T ss_pred             cCcchhhccchHhhc-cccccCcccccccCcccchhhcccC
Confidence            444445678999988 9999999999999998777666555

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=96.89  E-value=0.00022  Score=69.71  Aligned_cols=78  Identities=26%  Similarity=0.546  Sum_probs=51.3

Q ss_pred             CCCCCCCCccccccCCCCCCCCCCCCCCCCCccCCc------ccccC-CC-----cc-------cCcccccccccccc--
Q 014215           63 SRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGL------KENER-GG-----FV-------GQHLGQIQCKFYQS--  121 (428)
Q Consensus        63 ~r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~------~~~~~-~~-----~~-------~~~~~~~~C~~f~~--  121 (428)
                      +.|...+|.||. .|+|..|+.|+|+|+....+-..      ..+.. |-     .+       +....-.+|+||+-  
T Consensus        88 vDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAv  166 (343)
T KOG1763|consen   88 VDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAV  166 (343)
T ss_pred             CCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHH
Confidence            456778999998 69999999999999876544211      11111 10     00       11123458999972  


Q ss_pred             ----cc---CCCCCC-CCCcccCCCccc
Q 014215          122 ----TG---GCKHGE-ACRFKHSIEKSE  141 (428)
Q Consensus       122 ----~G---~C~~G~-~C~f~H~~~~~~  141 (428)
                          .|   .|.+|. .|.|.|-....-
T Consensus       167 E~~kYGWfW~CPnGg~~C~YrHaLP~Gy  194 (343)
T KOG1763|consen  167 ENGKYGWFWECPNGGDKCIYRHALPEGY  194 (343)
T ss_pred             hcCCccceeECCCCCCeeeeeecCCcch
Confidence                33   399875 899999887643

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=96.58  E-value=0.005  Score=66.27  Aligned_cols=163  Identities=21%  Similarity=0.411  Sum_probs=87.1

Q ss_pred             CCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccc-ccccc-CCCCCCCCCcccCCCcccccccccccCCCCcc
Q 014215           78 YCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKF-YQSTG-GCKHGEACRFKHSIEKSEVSKSVLNAFNLPIK  155 (428)
Q Consensus        78 ~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-f~~~G-~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~  155 (428)
                      .|+++..|.|.|+.-+...             ..+.+.|+. |...| .|.+ ..|.+.|......+..           
T Consensus       486 ~~~estrEe~~~~~~r~~~-------------~~rk~s~p~i~~~~~~~~s~-~~s~s~~s~~~~~ltk-----------  540 (681)
T KOG3702|consen  486 PVTESTREEFVPPTLRTGR-------------PLRKASQPTIFVANGHGGSN-PDSLSRHSEKKNELTK-----------  540 (681)
T ss_pred             cccccccccccCcccccCC-------------cccccCCCceecccccccCC-CcchhhCccccccccc-----------
Confidence            6777889999998766532             223334441 11122 2333 5778888765432210           


Q ss_pred             ccccccCccccccCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccc--cCccccccccCCCC
Q 014215          156 LESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEM--TGLIGCKYHLSAGG  233 (428)
Q Consensus       156 ~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per--~~~~~C~~f~~~G~  233 (428)
                               .+ ....|+|+.   .|. +..|.|.|+...... .++.         .-.++++  ...+.|.+-   -.
T Consensus       541 ---------~k-~l~~Cky~~---~Ct-~a~Ce~~HPtaa~~~-~s~p---------~k~fa~~~~ks~p~Ck~~---~k  593 (681)
T KOG3702|consen  541 ---------AK-ILTRCKYGP---ACT-SAECEFAHPTAAENA-KSLP---------NKKFASKCLKSHPGCKFG---KK  593 (681)
T ss_pred             ---------ce-eeccccCCC---cCC-chhhhhcCCcchhhh-hccc---------cccccccceecccccccc---cc
Confidence                     01 134799888   687 899999999754100 0000         0011111  122345442   23


Q ss_pred             CCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCCccCCC
Q 014215          234 CKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVADEGS  305 (428)
Q Consensus       234 C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~~~g~  305 (428)
                      |.. .+|.|.|........ .   .+... -..|.+   -..+|+|+   |.|+ ...|+|.||+.+-.+-.
T Consensus       594 Cta-sDC~~sH~~~~~pvq-~---t~ip~-~~~~~t---i~~~CrY~---pnCr-nm~C~F~HPk~cRf~~~  652 (681)
T KOG3702|consen  594 CTA-SDCNYSHAGRRIPVQ-P---TRIPP-PFPGGT---IRGLCRYR---PNCR-NMQCKFYHPKTCRFNTN  652 (681)
T ss_pred             ccc-ccCcccccCCCCCCc-c---ccCCC-CCCCCC---ccccceec---cCcC-CccccccCCcccccccc
Confidence            543 568899987642000 0   00000 011122   24689999   8898 78999999999876533

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=96.43  E-value=0.0011  Score=69.01  Aligned_cols=59  Identities=27%  Similarity=0.572  Sum_probs=46.1

Q ss_pred             CCCCcccccc--CCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCccc
Q 014215           67 AEDCPFYLRT--GYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKH  135 (428)
Q Consensus        67 ~~~C~~~~r~--G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H  135 (428)
                      ..+|.-..+.  ..|.||++|+|.|+.........+.          -.+.|..|.+.|.|.+|-.|+|+-
T Consensus        76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~D----------ig~~Cp~f~s~G~Cp~G~~CRFl~  136 (614)
T KOG2333|consen   76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPD----------IGPSCPVFESLGFCPYGFKCRFLG  136 (614)
T ss_pred             hccChHhhcCCCccCcccccccccccHHHHHhccCcc----------cCCccceeeccccCCccceeehhh
Confidence            4579998876  5899999999999987654322111          125799999999999999999963

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=95.99  E-value=0.0037  Score=63.80  Aligned_cols=60  Identities=27%  Similarity=0.523  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCCCCccC-------Cccccc---CCCcccCccccccccccccccCCCCCCCCCcccCCCccc
Q 014215           81 FGFCCKFNHPVRGDFQ-------GLKENE---RGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSE  141 (428)
Q Consensus        81 ~G~~C~F~H~~~~~~~-------~~~~~~---~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~  141 (428)
                      -|++|.+-|......-       ++....   +....|....+.+|+||+ .|.|+++++|+|+|...-..
T Consensus        98 ~GsKcsaph~ss~gl~yHna~I~g~E~sarvRVlfl~PTh~sMkpC~ffL-eg~CRF~enCRfSHG~~V~l  167 (486)
T KOG2185|consen   98 DGSKCSAPHTSSRGLYYHNARIIGFEGSARVRVLFLTPTHESMKPCKFFL-EGRCRFGENCRFSHGLDVPL  167 (486)
T ss_pred             cCCcccccccCCccceecceeEEeeccccceEEEeecCcchhhccchHhh-ccccccCcccccccCcccch
Confidence            3778887776554321       111111   122345667899999999 99999999999999876543

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.87  E-value=0.0059  Score=35.85  Aligned_cols=19  Identities=42%  Similarity=0.889  Sum_probs=16.5

Q ss_pred             CCccccccCCCCCCCCCCCCCC
Q 014215           69 DCPFYLRTGYCKFGFCCKFNHP   90 (428)
Q Consensus        69 ~C~~~~r~G~C~~G~~C~F~H~   90 (428)
                      .|+||.   .|+++++|.|.|+
T Consensus         1 ~Ck~~~---~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGP---NCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcC---CCCCCCcCccCCc
Confidence            489885   5999999999996

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.81  E-value=0.0055  Score=35.99  Aligned_cols=19  Identities=42%  Similarity=1.115  Sum_probs=16.6

Q ss_pred             cccccccccCCCCCCCCCcccC
Q 014215          115 QCKFYQSTGGCKHGEACRFKHS  136 (428)
Q Consensus       115 ~C~~f~~~G~C~~G~~C~f~H~  136 (428)
                      +||||.   .|++++.|.|+|+
T Consensus         1 ~Ck~~~---~C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGP---NCTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcC---CCCCCCcCccCCc
Confidence            499886   4999999999995

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=95.34  E-value=0.0041  Score=59.28  Aligned_cols=76  Identities=24%  Similarity=0.523  Sum_probs=50.3

Q ss_pred             CCCCCCCCccccccCCCCCCCCCCCCCCCCCccCC--c---c-cccCCCc--ccC--c-ccccccccccc---cc-----
Q 014215           63 SRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQG--L---K-ENERGGF--VGQ--H-LGQIQCKFYQS---TG-----  123 (428)
Q Consensus        63 ~r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~--~---~-~~~~~~~--~~~--~-~~~~~C~~f~~---~G-----  123 (428)
                      +.|.+.+|..|+ .+.|..|+.|+|+|+..+.+..  .   . -+....+  +..  | .-..+|+||+.   +|     
T Consensus        81 vdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~  159 (299)
T COG5252          81 VDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWG  159 (299)
T ss_pred             cCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccce
Confidence            346678999998 7999999999999996654421  0   0 0111111  111  2 23468999972   22     


Q ss_pred             -CCCCC-CCCCcccCCCc
Q 014215          124 -GCKHG-EACRFKHSIEK  139 (428)
Q Consensus       124 -~C~~G-~~C~f~H~~~~  139 (428)
                       .|.+| .+|-|.|....
T Consensus       160 W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         160 WTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             eeCCCCCceeeeeeccCc
Confidence             39987 59999998876

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=95.18  E-value=0.0085  Score=62.71  Aligned_cols=62  Identities=31%  Similarity=0.645  Sum_probs=44.6

Q ss_pred             ccccccccCC--CCCCCCCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccC--CC
Q 014215          222 LIGCKYHLSA--GGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFN--HP  297 (428)
Q Consensus       222 ~~~C~~f~~~--G~C~~G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~--H~  297 (428)
                      ...|.-....  ..|.+|++|+|.|....-..             .++..+   ++.|++|...|.|.||-.|||.  |-
T Consensus        76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLa-------------tK~~Di---g~~Cp~f~s~G~Cp~G~~CRFl~aHl  139 (614)
T KOG2333|consen   76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLA-------------TKAPDI---GPSCPVFESLGFCPYGFKCRFLGAHL  139 (614)
T ss_pred             hccChHhhcCCCccCcccccccccccHHHHHh-------------ccCccc---CCccceeeccccCCccceeehhhccc
Confidence            4678876654  48999999999998754211             011111   2579999999999999999996  54


Q ss_pred             CC
Q 014215          298 DP  299 (428)
Q Consensus       298 ~~  299 (428)
                      +.
T Consensus       140 d~  141 (614)
T KOG2333|consen  140 DI  141 (614)
T ss_pred             Cc
Confidence            43

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=95.04  E-value=0.0061  Score=58.17  Aligned_cols=80  Identities=20%  Similarity=0.490  Sum_probs=52.1

Q ss_pred             CccccccccccccccCCCCCCCCCcccCCCcccccc-------cccccCCCCccccccccCccccccCccCcccccC---
Q 014215          109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSK-------SVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRT---  178 (428)
Q Consensus       109 ~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~-------~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~---  178 (428)
                      ..++..+|..|+ .+.|..|+.|.|+|+....+.+.       ......++|+...      |--....+|+||...   
T Consensus        81 vdpK~~vcalF~-~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~kr------P~intd~VCkffieA~e~  153 (299)
T COG5252          81 VDPKTVVCALFL-NKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKR------PWINTDRVCKFFIEAMES  153 (299)
T ss_pred             cCchhHHHHHhc-cCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccC------CCCChhHHHHHHHHHHhc
Confidence            346788999998 99999999999999976644221       0111123333211      000134689999742   


Q ss_pred             ---C---CCCCC-CCCCCCCCCCC
Q 014215          179 ---E---GCKHG-EACRFSHSTEK  195 (428)
Q Consensus       179 ---g---~C~~G-~~C~f~H~~~~  195 (428)
                         |   .|++| .+|.|.|..+.
T Consensus       154 GkYgw~W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         154 GKYGWGWTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             CCccceeeCCCCCceeeeeeccCc
Confidence               2   49997 57999999764

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=92.94  E-value=0.032  Score=54.09  Aligned_cols=31  Identities=26%  Similarity=0.473  Sum_probs=25.8

Q ss_pred             CCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 014215           65 PFAEDCPFYLRTGYCKFGFCCKFNHPVRGDF   95 (428)
Q Consensus        65 ~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~   95 (428)
                      ..+..|.||+++|.|..|+.|.-.|......
T Consensus        13 kdKv~c~fy~k~gacR~gdrcsR~h~kpt~s   43 (260)
T KOG2202|consen   13 KDKVNCSFYFKIGACRHGDRCSRLHEKPTFS   43 (260)
T ss_pred             ccccccchHHhhcccccccHHHHhhcccccc
Confidence            3456799999999999999998888766544

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=91.96  E-value=0.064  Score=50.14  Aligned_cols=28  Identities=32%  Similarity=0.650  Sum_probs=24.7

Q ss_pred             CCCCccccccccCCCCCCCccCCCCCCc
Q 014215          274 EIECPFYMRNGSCAYGVDCRFNHPDPVA  301 (428)
Q Consensus       274 e~~C~~y~~~G~C~~G~~C~F~H~~~~~  301 (428)
                      ..+|..|..||+|-||+.|+|.|....-
T Consensus       141 pdVCKdyk~TGYCGYGDsCKflH~R~D~  168 (259)
T COG5152         141 PDVCKDYKETGYCGYGDSCKFLHDRSDF  168 (259)
T ss_pred             cccccchhhcccccCCchhhhhhhhhhh
Confidence            4589999999999999999999987643

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=91.69  E-value=0.064  Score=50.14  Aligned_cols=31  Identities=39%  Similarity=0.719  Sum_probs=27.0

Q ss_pred             CCCccccccCCCCCCCCCCCCCCCCCccCCc
Q 014215           68 EDCPFYLRTGYCKFGFCCKFNHPVRGDFQGL   98 (428)
Q Consensus        68 ~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~   98 (428)
                      -+|+-|-.+|.|-||++|+|+|.......++
T Consensus       142 dVCKdyk~TGYCGYGDsCKflH~R~D~KtGW  172 (259)
T COG5152         142 DVCKDYKETGYCGYGDSCKFLHDRSDFKTGW  172 (259)
T ss_pred             ccccchhhcccccCCchhhhhhhhhhhhccc
Confidence            4799999999999999999999987665554

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.39  E-value=0.38  Score=49.18  Aligned_cols=25  Identities=48%  Similarity=1.157  Sum_probs=23.5

Q ss_pred             ccccccccccCCCCCCCCCcccCCCc
Q 014215          114 IQCKFYQSTGGCKHGEACRFKHSIEK  139 (428)
Q Consensus       114 ~~C~~f~~~G~C~~G~~C~f~H~~~~  139 (428)
                      .+|+||+ .|.|++|+.|+|+|+...
T Consensus         9 tic~~~~-~g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQ-KGNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhcc-cccccccceeeeeccCch
Confidence            7999998 899999999999999884

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=84.13  E-value=0.73  Score=28.42  Aligned_cols=22  Identities=23%  Similarity=0.587  Sum_probs=19.1

Q ss_pred             cCcccccCCCCCCCCCCCCCCCC
Q 014215          171 QCKFYQRTEGCKHGEACRFSHST  193 (428)
Q Consensus       171 ~C~~f~~~g~C~~G~~C~f~H~~  193 (428)
                      +|.|-++||.|.- +.|.|.|.+
T Consensus         2 lC~yEl~Gg~Cnd-~~C~~QHfr   23 (23)
T PF10650_consen    2 LCPYELTGGVCND-PDCEFQHFR   23 (23)
T ss_pred             CCccccCCCeeCC-CCCCccccC
Confidence            7999999999974 899999963

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=83.14  E-value=0.37  Score=47.80  Aligned_cols=32  Identities=31%  Similarity=0.616  Sum_probs=27.2

Q ss_pred             CCCccccccccCCCCCCCccCCCCCCccCCCC
Q 014215          275 IECPFYMRNGSCAYGVDCRFNHPDPVADEGSD  306 (428)
Q Consensus       275 ~~C~~y~~~G~C~~G~~C~F~H~~~~~~~g~~  306 (428)
                      -+|..|..||+|-||+.|+|.|-...--.|.+
T Consensus       187 DicKdykeTgycg~gdSckFlh~r~DyK~GWq  218 (313)
T KOG1813|consen  187 DICKDYKETGYCGYGDSCKFLHDRSDYKAGWQ  218 (313)
T ss_pred             hhhhhhHhhCcccccchhhhhhhhhhccccce
Confidence            58999999999999999999999876544443

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=82.88  E-value=0.24  Score=48.14  Aligned_cols=28  Identities=29%  Similarity=0.820  Sum_probs=24.6

Q ss_pred             CccCcccccCCCCCCCCCCCCCCCCCCC
Q 014215          169 QIQCKFYQRTEGCKHGEACRFSHSTEKS  196 (428)
Q Consensus       169 ~~~C~~f~~~g~C~~G~~C~f~H~~~~~  196 (428)
                      ..-|.||.+.|.|.+|+.|.-.|.++..
T Consensus        15 Kv~c~fy~k~gacR~gdrcsR~h~kpt~   42 (260)
T KOG2202|consen   15 KVNCSFYFKIGACRHGDRCSRLHEKPTF   42 (260)
T ss_pred             ccccchHHhhcccccccHHHHhhccccc
Confidence            3579999999999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	428
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-09
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-09
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	3e-08
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	4e-08
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	9e-06
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	3e-05
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	3e-05
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	9e-05
2rhk_C	72	Cleavage and polyadenylation specificity factor su	2e-05
2rhk_C	72	Cleavage and polyadenylation specificity factor su	2e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	3e-04
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	9e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
           C+ +  +G C+YG  C+F+H   + +   +  +  +                C  +   G
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTE--------------LCHKFKLQG 60

Query: 285 SCAYGVDCRFNHPD 298
            C YG  C F H  
Sbjct: 61  RCPYGSRCHFIHNP 74

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 70  CPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGE 129
           C  Y  +G C++G  C+F H +           R            C  ++  G C +G 
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGL--------GELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 130 ACRFKHSIE 138
            C F H+  
Sbjct: 67  RCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 49.6 bits (118), Expect = 3e-08
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 18/79 (22%)

Query: 116 CKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFY 175
           C+ Y  +G C++G  C+F H + +   +                            C  +
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTEL------------------CHKF 56

Query: 176 QRTEGCKHGEACRFSHSTE 194
           +    C +G  C F H+  
Sbjct: 57  KLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 49.2 bits (117), Expect = 4e-08
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 15/76 (19%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
           C+ Y  +  C++G  C+F+H   +                             C      
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTEL---------------CHKFKLQ 59

Query: 232 GGCKYGNSCKFSHSKE 247
           G C YG+ C F H+  
Sbjct: 60  GRCPYGSRCHFIHNPT 75

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 43.1 bits (101), Expect = 9e-06
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 24/81 (29%)

Query: 56  GTKHEYPSRPF-AEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQI 114
           G+       P   E C FY+  G+C     C + H                         
Sbjct: 1   GSSGSSGELPKKRELCKFYIT-GFCARAENCPYMHG----------------------DF 37

Query: 115 QCKFYQSTGGCKHGEACRFKH 135
            CK Y +TG C +G+ C F H
Sbjct: 38  PCKLYHTTGNCINGDDCMFSH 58

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 21/84 (25%), Positives = 24/84 (28%), Gaps = 33/84 (39%)

Query: 116 CKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFY 175
           CKFY  TG C   E C + H                                    CK Y
Sbjct: 16  CKFY-ITGFCARAENCPYMHGDFP--------------------------------CKLY 42

Query: 176 QRTEGCKHGEACRFSHSTEKSENP 199
             T  C +G+ C FSH     E  
Sbjct: 43  HTTGNCINGDDCMFSHDPLTEETR 66

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 18/80 (22%), Positives = 23/80 (28%), Gaps = 30/80 (37%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
           CKFY     C   E C + H                                 CK + + 
Sbjct: 16  CKFYITGF-CARAENCPYMHGDFP-----------------------------CKLYHTT 45

Query: 232 GGCKYGNSCKFSHSKEKPQT 251
           G C  G+ C FSH     +T
Sbjct: 46  GNCINGDDCMFSHDPLTEET 65

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 40.5 bits (94), Expect = 9e-05
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 30/79 (37%)

Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
           CK++++ G C    +C + H                                C  Y   G
Sbjct: 16  CKFYIT-GFCARAENCPYMHGDF----------------------------PCKLYHTTG 46

Query: 285 SCAYGVDCRFNHPDPVADE 303
           +C  G DC F+H DP+ +E
Sbjct: 47  NCINGDDCMFSH-DPLTEE 64

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 25/75 (33%)

Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
           CK+ L  G CK G+ C+F H  +  +                         EC FY + G
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHEYDMTKM-----------------------SECYFYSKFG 54

Query: 285 SCAYGVDCRFNHPDP 299
            C+   +C F H DP
Sbjct: 55  ECS-NKECPFLHIDP 68

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 26/76 (34%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
           CK + R   CK G+ C F H  + ++                           C ++   
Sbjct: 19  CKHWLRGL-CKKGDQCEFLHEYDMTKMSE------------------------CYFYSKF 53

Query: 232 GGCKYGNSCKFSHSKE 247
           G C     C F H   
Sbjct: 54  GECS-NKECPFLHIDP 68

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 25/75 (33%)

Query: 225 CKYHLSAGGCKYGNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNG 284
           CK+ L  G CK G+ C+F H  +  +                          C FY + G
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHEYDMTKMPE-----------------------CYFYSKFG 48

Query: 285 SCAYGVDCRFNHPDP 299
            C    +C F H DP
Sbjct: 49  EC-SNKECPFLHIDP 62

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 36.8 bits (85), Expect = 9e-04
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 26/80 (32%)

Query: 172 CKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSA 231
           CK + R   CK G+ C F H  + ++ P                         C ++   
Sbjct: 13  CKHWLRGL-CKKGDQCEFLHEYDMTKMPE------------------------CYFYSKF 47

Query: 232 GGCKYGNSCKFSHSKEKPQT 251
           G C     C F H   + + 
Sbjct: 48  GECS-NKECPFLHIDPESKI 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	428
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.39
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.36
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.34
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.23
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.22
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.17
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.16
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.16
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.9
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.88
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.82
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.77
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.77
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.71
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.65
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.54
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.41
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.08
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	96.94
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	96.49
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	96.66
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	96.22
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.99
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	93.16
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	91.3
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	88.33

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=2.4e-13  Score=107.89  Aligned_cols=67  Identities=30%  Similarity=0.576  Sum_probs=56.7

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCccccccc
Q 014215           66 FAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKS  145 (428)
Q Consensus        66 ~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~  145 (428)
                      .+.+|+||++ |.|++|++|+|+|+....                 ++++|+||++.|.|. |+.|+|+|.....     
T Consensus         9 k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~-----   64 (77)
T 2d9n_A            9 KTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPES-----   64 (77)
T ss_dssp             TTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS-----
T ss_pred             cceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCccc-----
Confidence            5678999996 999999999999987643                 356899999669999 8999999987642     


Q ss_pred             ccccCCCCccccccccCccccccCccCcccccC
Q 014215          146 VLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRT  178 (428)
Q Consensus       146 ~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~  178 (428)
                                            +..+|.+|.++
T Consensus        65 ----------------------~~~~C~~f~~g   75 (77)
T 2d9n_A           65 ----------------------KIKDCPWSGPS   75 (77)
T ss_dssp             ----------------------SCSSSSCCTTT
T ss_pred             ----------------------cCCCCcccccC
Confidence                                  24699999987

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=4.3e-13  Score=106.41  Aligned_cols=58  Identities=28%  Similarity=0.681  Sum_probs=49.5

Q ss_pred             CccccccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCC
Q 014215          109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACR  188 (428)
Q Consensus       109 ~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~  188 (428)
                      .+.++.+|+||+ .|.|++|+.|+|+|+....                           ++++|+||++.|.|. |++|+
T Consensus         6 ~~~k~~~C~~fl-~G~C~~G~~C~fsH~~~~~---------------------------~~~~C~~f~~~G~C~-~~~C~   56 (77)
T 2d9n_A            6 SGEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------------------------KMPECYFYSKFGECS-NKECP   56 (77)
T ss_dssp             SCCTTSBCHHHH-TTCCSCTTSSSSBCSCCTT---------------------------TSCBCHHHHHTCCCC-CSSCS
T ss_pred             CCCcceeCHhHc-cCcCCCCCCCCCccccccC---------------------------cCCCCcccCCCCccC-CCCee
Confidence            356889999999 6999999999999987642                           246899999966999 89999


Q ss_pred             CCCCCCC
Q 014215          189 FSHSTEK  195 (428)
Q Consensus       189 f~H~~~~  195 (428)
                      |+|+.+.
T Consensus        57 f~H~~~~   63 (77)
T 2d9n_A           57 FLHIDPE   63 (77)
T ss_dssp             SBCCCTT
T ss_pred             ccCCCcc
Confidence            9999753

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.34  E-value=5.4e-13  Score=105.43  Aligned_cols=67  Identities=27%  Similarity=0.517  Sum_probs=29.2

Q ss_pred             CCCCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCC
Q 014215           64 RPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIE  138 (428)
Q Consensus        64 r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~  138 (428)
                      +..+.+|++|+++|.|++|++|+|+|+..+.+...        .....++.+|++|.+.|.|++|++|+|+|...
T Consensus         9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A            9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred             CccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            45788999998899999999999999998765321        11245678999888899999999999999865

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.23  E-value=3.8e-12  Score=100.51  Aligned_cols=68  Identities=22%  Similarity=0.543  Sum_probs=29.3

Q ss_pred             CccccccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCC
Q 014215          109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACR  188 (428)
Q Consensus       109 ~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~  188 (428)
                      ..+++.+|++|++.|.|++|++|+|+|+....+...                  ..++.++.+|++|...|.|.+|++|+
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~------------------~~~~~k~~~C~~f~~~G~C~~G~~C~   69 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN------------------RHPKYKTELCHKFKLQGRCPYGSRCH   69 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc------------------ccccccCCcccchhhCcCCCCcCcCC
Confidence            357899999998899999999999999987643210                  01123467999888778999999999


Q ss_pred             CCCCCC
Q 014215          189 FSHSTE  194 (428)
Q Consensus       189 f~H~~~  194 (428)
                      |+|...
T Consensus        70 f~H~~~   75 (77)
T 1m9o_A           70 FIHNPT   75 (77)
T ss_dssp             ------
T ss_pred             CCCCCC
Confidence            999853

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.22  E-value=2.1e-12  Score=107.03  Aligned_cols=84  Identities=26%  Similarity=0.421  Sum_probs=65.3

Q ss_pred             cCccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCC
Q 014215          168 VQIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKE  247 (428)
Q Consensus       168 ~~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~  247 (428)
                      ++.+|+||.+| .|.+|++|+|+|..                             .+|++|+..|.|++|..|+|.|...
T Consensus        12 k~~lC~~f~~G-~C~~G~~C~f~H~~-----------------------------~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           12 KRELCKFYITG-FCARAENCPYMHGD-----------------------------FPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             CCSBCTTTTTT-CCSCSTTCSSBSSS-----------------------------SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCccCcccccC-cCCCCCCCCCCCCC-----------------------------CcCcCcccCCcCCCCCCCcccCCCC
Confidence            46799999765 99999999999982                             4799997679999999999999975


Q ss_pred             CcchhhhcccCCCcccccCCCCCCCCCCCCcccccccc
Q 014215          248 KPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGS  285 (428)
Q Consensus       248 ~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~  285 (428)
                      .....  .  .-...++..+++.+.+|++|.+++++|.
T Consensus        62 ~~~~~--~--~l~~~l~~~~~~~~~~e~e~~~~~k~~~   95 (98)
T 2cqe_A           62 TEETR--E--LLDKMLADDAEAGAEDEKEVEELKKSGP   95 (98)
T ss_dssp             CHHHH--H--HHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred             cccch--h--HHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence            43210  0  0011245567888899999999999885

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.17  E-value=6.4e-12  Score=98.34  Aligned_cols=57  Identities=32%  Similarity=0.621  Sum_probs=48.7

Q ss_pred             CCCCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCc
Q 014215           64 RPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK  139 (428)
Q Consensus        64 r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~  139 (428)
                      .....+|+||++ |.|++|++|+|+|+....                 ++++|+||++.|.|.+ +.|+|.|....
T Consensus        13 ~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           13 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             CCCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             CCcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            345788999996 999999999999987542                 3678999995599999 99999998765

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.16  E-value=2.5e-11  Score=100.54  Aligned_cols=58  Identities=33%  Similarity=0.732  Sum_probs=49.8

Q ss_pred             CCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCC
Q 014215           59 HEYPSRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIE  138 (428)
Q Consensus        59 ~~~p~r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~  138 (428)
                      ..+..+..+.+|+||+ .|.|++|++|+|+|+                      ..+|++|++.|.|++|+.|+|+|+..
T Consensus         5 H~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A            5 SSGELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             CCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             ccCCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            3455566788999997 799999999999998                      13699997799999999999999965


Q ss_pred             c
Q 014215          139 K  139 (428)
Q Consensus       139 ~  139 (428)
                      .
T Consensus        62 ~   62 (98)
T 2cqe_A           62 T   62 (98)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.16  E-value=6.8e-12  Score=98.19  Aligned_cols=57  Identities=28%  Similarity=0.701  Sum_probs=48.7

Q ss_pred             ccccccccccccccCCCCCCCCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCC
Q 014215          110 HLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRF  189 (428)
Q Consensus       110 ~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f  189 (428)
                      +.+.++|+||+ .|.|++|+.|+|+|+....                           ++++|+||+++|.|.+ ++|+|
T Consensus        13 ~~k~~vCk~fl-~G~C~~G~~C~fsH~~~~~---------------------------~~~~C~~f~~~G~C~~-~~C~y   63 (72)
T 2rhk_C           13 GEKTVVCKHWL-RGLCKKGDQCEFLHEYDMT---------------------------KMSECYFYSKFGECSN-KECPF   63 (72)
T ss_dssp             CCCCSBCHHHH-TTCCCCGGGSSSBCSCCTT---------------------------SCCBCHHHHHHSCCSB-TTCCS
T ss_pred             CCcCeeCHHHh-cCCCCCCCCCCCccccccc---------------------------cCCcccccCCCCCCCC-CCeec
Confidence            46788999999 5999999999999987542                           2468999999559999 99999


Q ss_pred             CCCCCC
Q 014215          190 SHSTEK  195 (428)
Q Consensus       190 ~H~~~~  195 (428)
                      +|+.+.
T Consensus        64 ~H~~p~   69 (72)
T 2rhk_C           64 LHIDPE   69 (72)
T ss_dssp             BCCCCC
T ss_pred             cCCCcc
Confidence            999764

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.90  E-value=4.9e-10  Score=87.12  Aligned_cols=60  Identities=27%  Similarity=0.564  Sum_probs=47.8

Q ss_pred             CCCCccccccCCCCCCC-CCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCc
Q 014215           67 AEDCPFYLRTGYCKFGF-CCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK  139 (428)
Q Consensus        67 ~~~C~~~~r~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~  139 (428)
                      .++|++|+ .|.|++|+ .|+|+|+.......          ....++.+|++|+ .|.|.+| .|+|+|....
T Consensus         6 ~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~   66 (70)
T 3d2q_A            6 LEVCREYQ-RGNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYI-KGRCSRE-KCKYFHPPAH   66 (70)
T ss_dssp             EEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHH-TTCCCCT-TCCSBCCCHH
T ss_pred             chhCHHHh-cCCCCCCCCCCCCccCccccccc----------ccCCcceeccccC-cCCCCCC-CcCeeCCHHH
Confidence            46899998 59999999 59999998754321          1234678999999 6999999 9999998653

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.88  E-value=6.5e-10  Score=86.38  Aligned_cols=61  Identities=26%  Similarity=0.644  Sum_probs=47.4

Q ss_pred             cccccccccccccCCCCCC-CCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCC
Q 014215          111 LGQIQCKFYQSTGGCKHGE-ACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRF  189 (428)
Q Consensus       111 ~~~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f  189 (428)
                      .+..+|++|+ .|.|.+|+ .|+|+|+.......                    .....+++|++|++| .|.+| +|+|
T Consensus         4 ~k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~--------------------~~~~~~~vC~~flkG-~C~r~-~C~y   60 (70)
T 3d2q_A            4 DRLEVCREYQ-RGNCNRGENDCRFAHPADSTMID--------------------TNDNTVTVCMDYIKG-RCSRE-KCKY   60 (70)
T ss_dssp             CEEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCB--------------------TTTTEEEBCHHHHTT-CCCCT-TCCS
T ss_pred             ccchhCHHHh-cCCCCCCCCCCCCccCccccccc--------------------ccCCcceeccccCcC-CCCCC-CcCe
Confidence            3567999997 89999999 59999987642110                    001235799999997 99999 9999


Q ss_pred             CCCCC
Q 014215          190 SHSTE  194 (428)
Q Consensus       190 ~H~~~  194 (428)
                      .|+..
T Consensus        61 ~H~~~   65 (70)
T 3d2q_A           61 FHPPA   65 (70)
T ss_dssp             BCCCH
T ss_pred             eCCHH
Confidence            99964

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.82  E-value=1.8e-09  Score=86.61  Aligned_cols=61  Identities=23%  Similarity=0.556  Sum_probs=49.3

Q ss_pred             CccccccccccccccCCCCCC-CCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCC
Q 014215          109 QHLGQIQCKFYQSTGGCKHGE-ACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEAC  187 (428)
Q Consensus       109 ~~~~~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C  187 (428)
                      .|.+..+|++|+ .|.|.+|+ .|+|+|+.......                      ....++|.+|++| .|.++ .|
T Consensus         5 ~~~~~~VCr~Fl-rG~C~r~d~~C~f~H~~~~~~~~----------------------~~~~~vC~dflkG-~C~r~-~C   59 (83)
T 3d2n_A            5 KWLTLEVCREFQ-RGTCSRPDTECKFAHPSKSCQVE----------------------NGRVIACFDSLKG-RCSRE-NC   59 (83)
T ss_dssp             GGGEEEBCTTGG-GTCCCSCTTTCSSBCCCTTCCEE----------------------TTEEECCHHHHTT-CCCCS-SC
T ss_pred             ccccchhcHHHh-cCCCCCCCCCCCCcCCCcccccc----------------------CCceeehhHhhhc-cccCC-Cc
Confidence            467788999999 59999997 99999998642111                      1135799999998 99998 99


Q ss_pred             CCCCCCC
Q 014215          188 RFSHSTE  194 (428)
Q Consensus       188 ~f~H~~~  194 (428)
                      +|.|+..
T Consensus        60 ~y~H~~~   66 (83)
T 3d2n_A           60 KYLHPPP   66 (83)
T ss_dssp             SSCCCCH
T ss_pred             ceeCChH
Confidence            9999965

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=1e-09  Score=90.84  Aligned_cols=61  Identities=25%  Similarity=0.610  Sum_probs=48.1

Q ss_pred             cccccccccccccCCCCCC-CCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCC
Q 014215          111 LGQIQCKFYQSTGGCKHGE-ACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRF  189 (428)
Q Consensus       111 ~~~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f  189 (428)
                      .+..+|++|+ .|.|++|+ .|+|+|+.......                    ......++|++|++| .|.+| +|+|
T Consensus        18 ~k~~VCr~Fl-rG~C~rgd~~C~FsH~~~~~~~~--------------------~~~~~~~vC~~flkG-~C~r~-~C~y   74 (98)
T 2e5s_A           18 DKLEVCREFQ-RGNCARGETDCRFAHPADSTMID--------------------TSDNTVTVCMDYIKG-RCMRE-KCKY   74 (98)
T ss_dssp             SEEEBCSHHH-HTCCSSHHHHCSSBCCSSCCSCC--------------------TTTCEEEBCHHHHHT-CCCCT-TCCS
T ss_pred             hhhhhhHHHh-cCcCCCCCCCCCCcCCchhcccc--------------------ccCCccccchhhccC-CCCCC-CcCc
Confidence            3567999999 69999999 79999998653110                    001235799999997 99999 9999


Q ss_pred             CCCCC
Q 014215          190 SHSTE  194 (428)
Q Consensus       190 ~H~~~  194 (428)
                      .|+..
T Consensus        75 ~H~~~   79 (98)
T 2e5s_A           75 FHPPA   79 (98)
T ss_dssp             BCCCH
T ss_pred             cCChH
Confidence            99975

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=2.8e-09  Score=88.18  Aligned_cols=60  Identities=27%  Similarity=0.558  Sum_probs=49.2

Q ss_pred             CCCCccccccCCCCCCC-CCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCc
Q 014215           67 AEDCPFYLRTGYCKFGF-CCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK  139 (428)
Q Consensus        67 ~~~C~~~~r~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~  139 (428)
                      .++|++|++ |.|++|+ .|+|+|+.......          +...++++|++|+ .|.|.++ .|+|.|....
T Consensus        20 ~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~fl-kG~C~r~-~C~y~H~~~~   80 (98)
T 2e5s_A           20 LEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYI-KGRCMRE-KCKYFHPPAH   80 (98)
T ss_dssp             EEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHH-HTCCCCT-TCCSBCCCHH
T ss_pred             hhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhc-cCCCCCC-CcCccCChHH
Confidence            468999997 9999999 79999998765321          1234678999999 7999999 9999998764

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.71  E-value=5.8e-09  Score=83.66  Aligned_cols=59  Identities=27%  Similarity=0.475  Sum_probs=48.0

Q ss_pred             CCCCccccccCCCCCCC-CCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcc
Q 014215           67 AEDCPFYLRTGYCKFGF-CCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKS  140 (428)
Q Consensus        67 ~~~C~~~~r~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~  140 (428)
                      .++|++|++ |.|++|+ .|+|+|+......            +..+..+|.+|+ .|.|.++ .|+|.|.....
T Consensus         9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~------------~~~~~~vC~dfl-kG~C~r~-~C~y~H~~~~l   68 (83)
T 3d2n_A            9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQV------------ENGRVIACFDSL-KGRCSRE-NCKYLHPPPHL   68 (83)
T ss_dssp             EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE------------ETTEEECCHHHH-TTCCCCS-SCSSCCCCHHH
T ss_pred             chhcHHHhc-CCCCCCCCCCCCcCCCccccc------------cCCceeehhHhh-hccccCC-CcceeCChHHH
Confidence            468999997 9999997 9999999865321            123468999999 7999998 99999987653

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.65  E-value=1.4e-08  Score=82.44  Aligned_cols=60  Identities=23%  Similarity=0.573  Sum_probs=48.1

Q ss_pred             ccccccccccccccCCCCCC-CCCcccCCCcccccccccccCCCCccccccccCccccccCccCcccccCCCCCCCCCCC
Q 014215          110 HLGQIQCKFYQSTGGCKHGE-ACRFKHSIEKSEVSKSVLNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACR  188 (428)
Q Consensus       110 ~~~~~~C~~f~~~G~C~~G~-~C~f~H~~~~~~~s~~~~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~  188 (428)
                      +.+..+|++|+ .|.|.+|+ .|+|+|+.......                      ....++|.+|++| .|.++ .|+
T Consensus        14 ~~~~~VCrdFl-rG~C~r~d~~CrfsH~~~~~~v~----------------------~~~~~vC~dflkG-~C~r~-~Ck   68 (89)
T 2rpp_A           14 WLTLEVCRQFQ-RGTCSRSDEECKFAHPPKSCQVE----------------------NGRVIACFDSLKG-RCSRE-NCK   68 (89)
T ss_dssp             SSEECBCHHHH-HTCCCCCTTTSSSBCCCSSSCCB----------------------TTBEEBCHHHHHT-CCCCT-TCC
T ss_pred             cchhhhchHHh-cCCCCCCCCCCCCcCCCcccccc----------------------CCceeeehhhhhC-cCCCC-Ccc
Confidence            34577999999 69999998 99999998752110                      1135799999998 99997 999


Q ss_pred             CCCCCC
Q 014215          189 FSHSTE  194 (428)
Q Consensus       189 f~H~~~  194 (428)
                      |.|+..
T Consensus        69 y~H~~~   74 (89)
T 2rpp_A           69 YLHPPT   74 (89)
T ss_dssp             SBCCCH
T ss_pred             eecCHH
Confidence            999965

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.54  E-value=2.8e-08  Score=80.58  Aligned_cols=58  Identities=28%  Similarity=0.512  Sum_probs=47.9

Q ss_pred             CCCCccccccCCCCCCC-CCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCc
Q 014215           67 AEDCPFYLRTGYCKFGF-CCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEK  139 (428)
Q Consensus        67 ~~~C~~~~r~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~  139 (428)
                      .++|+.|++ |.|++|+ .|+|+|+......            +.-+..+|.+|+ .|.|.++ .|+|.|....
T Consensus        17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v------------~~~~~~vC~dfl-kG~C~r~-~Cky~H~~~h   75 (89)
T 2rpp_A           17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQV------------ENGRVIACFDSL-KGRCSRE-NCKYLHPPTH   75 (89)
T ss_dssp             ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC------------BTTBEEBCHHHH-HTCCCCT-TCCSBCCCHH
T ss_pred             hhhchHHhc-CCCCCCCCCCCCcCCCccccc------------cCCceeeehhhh-hCcCCCC-CcceecCHHH
Confidence            468999997 9999998 9999999875321            112478999999 8999997 9999998764

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.41  E-value=1.7e-07  Score=87.60  Aligned_cols=96  Identities=23%  Similarity=0.502  Sum_probs=66.7

Q ss_pred             cccccccccCCC----CCCCCCcccCCCcccccc----cccccCCC---CccccccccCccccccCccCcccccC----C
Q 014215          115 QCKFYQSTGGCK----HGEACRFKHSIEKSEVSK----SVLNAFNL---PIKLESKGEGLMEKTVQIQCKFYQRT----E  179 (428)
Q Consensus       115 ~C~~f~~~G~C~----~G~~C~f~H~~~~~~~s~----~~~~~~~~---p~~~~~~~~~~~e~~~~~~C~~f~~~----g  179 (428)
                      +||+|+ .|.|+    .+..|+|+|+........    ..++.++.   -.-.-.+++.+.+    .+|.+| +|    |
T Consensus        91 LCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLP----eiC~~Y-kG~g~~g  164 (229)
T 3u9g_A           91 LCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLP----EICKSY-KGEGRKQ  164 (229)
T ss_dssp             CCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSC----CBCTTC-CCSSSCC
T ss_pred             echhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCc----hHHHHh-CCCCCCC
Confidence            799999 79993    457899999998753211    11111110   0001123333222    389999 86    6


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCCcc
Q 014215          180 GCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEKPQ  250 (428)
Q Consensus       180 ~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~  250 (428)
                      .|.+++.|...|+                                |++|.+ |.|++ ..|+-+|....+.
T Consensus       165 ~C~~~~~C~kLHI--------------------------------C~~Fl~-G~C~f-~~CkRsH~~~~~~  201 (229)
T 3u9g_A          165 TCGQPQPCERLHI--------------------------------CEHFTR-GNCSY-LNCLRSHNLMDRK  201 (229)
T ss_dssp             SCSSSSCCCSBCS--------------------------------CHHHHT-TCCCC-SSCSSCCCTTSHH
T ss_pred             cCCCCCCCcceec--------------------------------cchhhc-CCcCC-CCccCccCccCch
Confidence            8999999999987                                999996 99999 7999999987654

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.08  E-value=2.9e-06  Score=79.20  Aligned_cols=95  Identities=21%  Similarity=0.390  Sum_probs=61.4

Q ss_pred             cCcccccCCCC----CCCCCCCCCCCCCCCCCCCC--CCCCCCCcccC-CCC-cccc--cCccccccccC----CCCCCC
Q 014215          171 QCKFYQRTEGC----KHGEACRFSHSTEKSENPLP--FSGANGMKESK-GGS-LVEM--TGLIGCKYHLS----AGGCKY  236 (428)
Q Consensus       171 ~C~~f~~~g~C----~~G~~C~f~H~~~~~~~p~~--~~~~~~~~~s~-~~~-~per--~~~~~C~~f~~----~G~C~~  236 (428)
                      +|++|+-| .|    ..+..|+|+|...+..+...  ..+-.+....+ ... +...  --..+|.+| +    .|.|++
T Consensus        91 LCK~~l~G-~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~~  168 (229)
T 3u9g_A           91 LCKLNLLG-RCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCGQ  168 (229)
T ss_dssp             CCHHHHTT-CCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCSS
T ss_pred             echhhhcC-cCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCCC
Confidence            89999997 99    34688999999764322000  00000000000 000 0000  012689999 6    369999


Q ss_pred             CCCCCcCCCCCCcchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCC
Q 014215          237 GNSCKFSHSKEKPQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPV  300 (428)
Q Consensus       237 G~~C~f~H~~~~~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~  300 (428)
                      ++.|...|                               +|.+|++ |.|+| ..|+..|....
T Consensus       169 ~~~C~kLH-------------------------------IC~~Fl~-G~C~f-~~CkRsH~~~~  199 (229)
T 3u9g_A          169 PQPCERLH-------------------------------ICEHFTR-GNCSY-LNCLRSHNLMD  199 (229)
T ss_dssp             SSCCCSBC-------------------------------SCHHHHT-TCCCC-SSCSSCCCTTS
T ss_pred             CCCCccee-------------------------------ccchhhc-CCcCC-CCccCccCccC
Confidence            99999888                               6999988 99999 89999998643

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=96.94  E-value=4e-06  Score=66.43  Aligned_cols=65  Identities=32%  Similarity=0.689  Sum_probs=52.4

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCCCccCCcccccCCCcccCccccccccccccccCCCCCCCCCcccCCCcccccccc
Q 014215           67 AEDCPFYLRTGYCKFGFCCKFNHPVRGDFQGLKENERGGFVGQHLGQIQCKFYQSTGGCKHGEACRFKHSIEKSEVSKSV  146 (428)
Q Consensus        67 ~~~C~~~~r~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~~~~~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~~~s~~~  146 (428)
                      .+.|+||.   .|++ ..|.|.|+..                    ...|+|++   .|.+ ..|.|.|+..        
T Consensus         9 ~e~CKf~~---~Ctn-~~C~f~Hp~~--------------------~~~Cr~g~---~C~~-~~C~f~HP~~--------   52 (80)
T 2lhn_A            9 LEQCKFGT---HCTN-KRCKYRHARS--------------------HIMCREGA---NCTR-IDCLFGHPIN--------   52 (80)
Confidence            46799997   8999 8999999753                    23699886   8998 7899999732        


Q ss_pred             cccCCCCccccccccCccccccCccCcccccCCCCCCCCCCCCCCCCC
Q 014215          147 LNAFNLPIKLESKGEGLMEKTVQIQCKFYQRTEGCKHGEACRFSHSTE  194 (428)
Q Consensus       147 ~~~~~~p~~~~~~~~~~~e~~~~~~C~~f~~~g~C~~G~~C~f~H~~~  194 (428)
                                             ..|+|+.   .|.. .+|.|.|+..
T Consensus        53 -----------------------~~Crf~~---~C~n-~~C~F~Hp~g   73 (80)
T 2lhn_A           53 -----------------------EDCRFGV---NCKN-IYCLFRHPPG   73 (80)
Confidence                                   2688876   6887 7999999864

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=96.49  E-value=2.6e-05  Score=61.78  Aligned_cols=68  Identities=29%  Similarity=0.670  Sum_probs=53.7

Q ss_pred             CccCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcccccCccccccccCCCCCCCCCCCCcCCCCCC
Q 014215          169 QIQCKFYQRTEGCKHGEACRFSHSTEKSENPLPFSGANGMKESKGGSLVEMTGLIGCKYHLSAGGCKYGNSCKFSHSKEK  248 (428)
Q Consensus       169 ~~~C~~f~~~g~C~~G~~C~f~H~~~~~~~p~~~~~~~~~~~s~~~~~per~~~~~C~~f~~~G~C~~G~~C~f~H~~~~  248 (428)
                      ...|+|+.   .|.. .+|.|.|+..                           ...|+++   ..|++ .+|.|.|+.. 
T Consensus         9 ~e~CKf~~---~Ctn-~~C~f~Hp~~---------------------------~~~Cr~g---~~C~~-~~C~f~HP~~-   52 (80)
T 2lhn_A            9 LEQCKFGT---HCTN-KRCKYRHARS---------------------------HIMCREG---ANCTR-IDCLFGHPIN-   52 (80)
Confidence            46899988   7998 9999999853                           1479997   47998 7799999731 


Q ss_pred             cchhhhcccCCCcccccCCCCCCCCCCCCccccccccCCCCCCCccCCCCCCcc
Q 014215          249 PQTYIKKSEKASPELNFLGLPIRVHEIECPFYMRNGSCAYGVDCRFNHPDPVAD  302 (428)
Q Consensus       249 ~~~~~~~~~~~~~~~n~~g~P~r~~e~~C~~y~~~G~C~~G~~C~F~H~~~~~~  302 (428)
                                                ..|+|+   -.|.. ..|.|.|+....+
T Consensus        53 --------------------------~~Crf~---~~C~n-~~C~F~Hp~g~~~   76 (80)
T 2lhn_A           53 --------------------------EDCRFG---VNCKN-IYCLFRHPPGRVL   76 (80)
Confidence                                      369998   36996 8999999976554

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.66  E-value=0.00057  Score=52.34  Aligned_cols=28  Identities=32%  Similarity=0.497  Sum_probs=25.1

Q ss_pred             CCCCccccccCCCCCCCCCCCCCCCCCcc
Q 014215           67 AEDCPFYLRTGYCKFGFCCKFNHPVRGDF   95 (428)
Q Consensus        67 ~~~C~~~~r~G~C~~G~~C~F~H~~~~~~   95 (428)
                      ..+|..| .+|.|+||++|.|+|+..+++
T Consensus        20 ~~LC~~~-~~G~C~~G~~C~FAHG~~ELr   47 (69)
T 2d9m_A           20 FSICDRY-MNGTCPEGNSCKFAHGNAELH   47 (69)
T ss_dssp             CSBCHHH-HHSCCSSCSSCSSBSSHHHHH
T ss_pred             cccCccc-CcCCCCCCCccCCcCCHHHHh
Confidence            4899999 489999999999999988775

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.22  E-value=0.0011  Score=50.78  Aligned_cols=25  Identities=36%  Similarity=0.813  Sum_probs=22.2

Q ss_pred             CCCccccccccCCCCCCCccCCCCCC
Q 014215          275 IECPFYMRNGSCAYGVDCRFNHPDPV  300 (428)
Q Consensus       275 ~~C~~y~~~G~C~~G~~C~F~H~~~~  300 (428)
                      .+|..| .+|.|+||+.|.|+|+...
T Consensus        21 ~LC~~~-~~G~C~~G~~C~FAHG~~E   45 (69)
T 2d9m_A           21 SICDRY-MNGTCPEGNSCKFAHGNAE   45 (69)
T ss_dssp             SBCHHH-HHSCCSSCSSCSSBSSHHH
T ss_pred             ccCccc-CcCCCCCCCccCCcCCHHH
Confidence            589999 5699999999999999753

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.99  E-value=0.0017  Score=46.23  Aligned_cols=28  Identities=25%  Similarity=0.516  Sum_probs=25.5

Q ss_pred             ccccccccccccCCCCCCCCCcccCCCc
Q 014215          112 GQIQCKFYQSTGGCKHGEACRFKHSIEK  139 (428)
Q Consensus       112 ~~~~C~~f~~~G~C~~G~~C~f~H~~~~  139 (428)
                      ...+|+.|...|.|++|.+|.++|+..-
T Consensus        19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           19 PTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             ccchhhhccccccCCCCCCCCccccCCC
Confidence            5679999999999999999999999864

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=93.16  E-value=0.038  Score=39.29  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=24.8

Q ss_pred             CCCCCccccccccCCCCCCCccCCCCCC
Q 014215          273 HEIECPFYMRNGSCAYGVDCRFNHPDPV  300 (428)
Q Consensus       273 ~e~~C~~y~~~G~C~~G~~C~F~H~~~~  300 (428)
                      ...+|.-|...|+|++|..|.+.|....
T Consensus        19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           19 PTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             ccchhhhccccccCCCCCCCCccccCCC
Confidence            3568999999999999999999998654

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=91.30  E-value=0.049  Score=51.61  Aligned_cols=26  Identities=31%  Similarity=0.804  Sum_probs=23.5

Q ss_pred             CCCccccccccCCCCCCCccCCCCCCc
Q 014215          275 IECPFYMRNGSCAYGVDCRFNHPDPVA  301 (428)
Q Consensus       275 ~~C~~y~~~G~C~~G~~C~F~H~~~~~  301 (428)
                      .+|.||.+ |.|++|+.|.|.|..+..
T Consensus        71 ~~C~ffak-G~C~~G~~C~y~H~lPt~   96 (240)
T 3u1l_A           71 FFCLFFAK-GMCCLGPKCEYLHHIPDE   96 (240)
T ss_dssp             SBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred             eEcCcccc-CCCCCCCCCCccCCCCCc
Confidence            58999977 999999999999988764

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=88.33  E-value=0.12  Score=48.81  Aligned_cols=27  Identities=30%  Similarity=0.710  Sum_probs=23.8

Q ss_pred             ccccccccccccCCCCCCCCCcccCCCc
Q 014215          112 GQIQCKFYQSTGGCKHGEACRFKHSIEK  139 (428)
Q Consensus       112 ~~~~C~~f~~~G~C~~G~~C~f~H~~~~  139 (428)
                      +..+|-||. .|.|++|+.|.|.|....
T Consensus        69 ~~~~C~ffa-kG~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           69 QLFFCLFFA-KGMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             CCSBCHHHH-TTCCSCGGGCSSBBSCCC
T ss_pred             CCeEcCccc-cCCCCCCCCCCccCCCCC
Confidence            456899998 599999999999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	428
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.001
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.001
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	0.003

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 116 CKFYQSTGGCKHGEACRFKHSIE 138
           C+ Y  +G C++G  C+F H + 
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLG 34

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 116 CKFYQSTGGCKHGEACRFKHSIE 138
           C+ ++ +G CK+GE C+F H   
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFH 31

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.003
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 116 CKFYQSTGGCKHGEACRFKHSIE 138
           C+ + + G C +G  C F H+ +
Sbjct: 11  CRTFHTIGFCPYGPRCHFIHNAD 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	428
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.23
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.13
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.04
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.0
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.99
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.91
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.56
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.27
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	96.24
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	96.07
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	90.41
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	90.07

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=4e-07  Score=61.15  Aligned_cols=33  Identities=33%  Similarity=0.598  Sum_probs=29.5

Q ss_pred             CCCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 014215           63 SRPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDF   95 (428)
Q Consensus        63 ~r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~   95 (428)
                      .+..+++|++|.+.|.|.+|++|.|+|+..+++
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            355789999999999999999999999998874

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.2e-07  Score=61.04  Aligned_cols=32  Identities=31%  Similarity=0.529  Sum_probs=29.1

Q ss_pred             CCCCCCCccccccCCCCCCCCCCCCCCCCCcc
Q 014215           64 RPFAEDCPFYLRTGYCKFGFCCKFNHPVRGDF   95 (428)
Q Consensus        64 r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~~~   95 (428)
                      +..+++|++|.+.|.|.+|++|.|+|+.++++
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            56789999999899999999999999998874

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.4e-06  Score=58.46  Aligned_cols=32  Identities=25%  Similarity=0.708  Sum_probs=28.9

Q ss_pred             CccccccccccccccCCCCCCCCCcccCCCcc
Q 014215          109 QHLGQIQCKFYQSTGGCKHGEACRFKHSIEKS  140 (428)
Q Consensus       109 ~~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~  140 (428)
                      ..+|+.+|++|++.|.|++|++|.|+|...+.
T Consensus         5 ~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~EL   36 (40)
T d1m9oa_           5 SRYKTELCRTYSESGRCRYGAKCQFAHGLGEL   36 (40)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred             CccccccChhhhcCCcCCCCCCCCCCCCHHHh
Confidence            56899999999989999999999999988764

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=5.1e-07  Score=58.38  Aligned_cols=30  Identities=27%  Similarity=0.622  Sum_probs=27.0

Q ss_pred             CCCCCCCccccccCCCCCCCCCCCCCCCCC
Q 014215           64 RPFAEDCPFYLRTGYCKFGFCCKFNHPVRG   93 (428)
Q Consensus        64 r~~~~~C~~~~r~G~C~~G~~C~F~H~~~~   93 (428)
                      +..+++|+.|..+|.|.+|++|.|+|+.++
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            457899999999999999999999998753

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.5e-07  Score=58.23  Aligned_cols=29  Identities=24%  Similarity=0.642  Sum_probs=26.6

Q ss_pred             ccccccccccccccCCCCCCCCCcccCCC
Q 014215          110 HLGQIQCKFYQSTGGCKHGEACRFKHSIE  138 (428)
Q Consensus       110 ~~~~~~C~~f~~~G~C~~G~~C~f~H~~~  138 (428)
                      ++|+.+|++|.+.|.|.+|++|.|+|...
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            57899999999899999999999999764

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=8.6e-07  Score=58.09  Aligned_cols=31  Identities=29%  Similarity=0.735  Sum_probs=28.0

Q ss_pred             ccccccccccccccCCCCCCCCCcccCCCcc
Q 014215          110 HLGQIQCKFYQSTGGCKHGEACRFKHSIEKS  140 (428)
Q Consensus       110 ~~~~~~C~~f~~~G~C~~G~~C~f~H~~~~~  140 (428)
                      ++|+.+|++|...|.|++|++|.|+|...+.
T Consensus         3 kyKT~lC~~~~~~g~C~~G~~C~FAHg~~EL   33 (36)
T d1rgoa1           3 RYKTELCRPFEESGTCKYGEKCQFAHGFHEL   33 (36)
T ss_dssp             TTTSSBCHHHHHHSCCTTGGGCSSBSSGGGC
T ss_pred             CcchhhCcchhcCCcCCCCCcCCCcCCHHHc
Confidence            5799999999888999999999999987753

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.8e-05  Score=47.72  Aligned_cols=25  Identities=40%  Similarity=0.822  Sum_probs=22.7

Q ss_pred             cccccccccccccCCCCCCCCCcccC
Q 014215          111 LGQIQCKFYQSTGGCKHGEACRFKHS  136 (428)
Q Consensus       111 ~~~~~C~~f~~~G~C~~G~~C~f~H~  136 (428)
                      .++.+|+||+ .|.|.+|++|.|.|.
T Consensus         4 kkkelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           4 KKRELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             CCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhhe-eeeecCCcCcccccC
Confidence            3577999999 999999999999996

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=8.1e-05  Score=44.85  Aligned_cols=24  Identities=38%  Similarity=0.823  Sum_probs=21.7

Q ss_pred             CCCCCccccccCCCCCCCCCCCCCC
Q 014215           66 FAEDCPFYLRTGYCKFGFCCKFNHP   90 (428)
Q Consensus        66 ~~~~C~~~~r~G~C~~G~~C~F~H~   90 (428)
                      .+++|+||+ +|.|.+|++|.|.|.
T Consensus         5 kkelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhe-eeeecCCcCcccccC
Confidence            467899999 699999999999995

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.00052  Score=48.15  Aligned_cols=23  Identities=43%  Similarity=1.051  Sum_probs=21.3

Q ss_pred             cCcccccCCCCCCCCCCCCCCCC
Q 014215          171 QCKFYQRTEGCKHGEACRFSHST  193 (428)
Q Consensus       171 ~C~~f~~~g~C~~G~~C~f~H~~  193 (428)
                      +|+||..|+.|..|++|+|+|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            69999999999999999999963

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.00085  Score=47.05  Aligned_cols=25  Identities=40%  Similarity=0.988  Sum_probs=21.5

Q ss_pred             cccccccccCCCCCCCCCcccCCCc
Q 014215          115 QCKFYQSTGGCKHGEACRFKHSIEK  139 (428)
Q Consensus       115 ~C~~f~~~G~C~~G~~C~f~H~~~~  139 (428)
                      +||||-+.+.|-.|+.|+|+|..-.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~pLt   26 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDPLT   26 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             CcceeecCCcccCCCcccccCCccC
Confidence            6999997778999999999996544

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.41  E-value=0.033  Score=35.10  Aligned_cols=26  Identities=27%  Similarity=0.567  Sum_probs=23.5

Q ss_pred             ccccccccccccCCCCCCCCCcccCC
Q 014215          112 GQIQCKFYQSTGGCKHGEACRFKHSI  137 (428)
Q Consensus       112 ~~~~C~~f~~~G~C~~G~~C~f~H~~  137 (428)
                      .+.+|..|...|.|..|..|..+|++
T Consensus        12 ~~~iC~~FsAyGWCP~G~qCp~SHdi   37 (37)
T d2fc6a1          12 PTSICDNFSAYGWCPLGPQCPQSHDI   37 (37)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             ccchhhhhhhccccCCCCCCcccCcC
Confidence            46789999999999999999999984

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.07  E-value=0.049  Score=34.29  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=22.9

Q ss_pred             cCccCcccccCCCCCCCCCCCCCCC
Q 014215          168 VQIQCKFYQRTEGCKHGEACRFSHS  192 (428)
Q Consensus       168 ~~~~C~~f~~~g~C~~G~~C~f~H~  192 (428)
                      .+.+|.-|...|+|..|..|+.+|.
T Consensus        12 ~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          12 PTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             ccchhhhhhhccccCCCCCCcccCc
Confidence            3579999999999999999999996