Citrus Sinensis ID: 014240

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MLDSDDDNSSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQRMLSEGRNVGHYAVNVDDDEV
cccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccHHHHccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccc
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEccHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccc
mldsdddnssvsststmrsdrmsvsgteevqLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITfvggndpeeTERTMQIMWQIVhpklgsnvvatrpsapIITAMVSAWSFLLTTmdgcsldskkWQQSISYFSTlldkddrsIRIAAGEALALILETgslekfsseakgsndgsreEYIHLQGLKGKILNQVRNLsveaggkgsakkdltSQRNLFKDILEFLeygycpetstkiggeslktsnWSQLIQLNFLKHflgggfvkhmqeneflhdvfgftpkrKYLSVAEHHISstdkrmykspnsvvNKARTQKLNKQRMlsegrnvghyavnvdddev
mldsdddnssvsststmrsdrmsvsgteevqlekDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILetgslekfsseakgsndgsrEEYIHLQGLKGKILNQVRNLSVeaggkgsakkdltsqRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSVAEHHisstdkrmykspnsvvnkartqklnkqrmlsegrnvghyavnvdddev
MLdsdddnssvsststmrsdrmsvsGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRiaagealalileTGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQRMLSEGRNVGHYAVNVDDDEV
********************************************L**********ALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETG*******************YIHLQGLKGKILNQVRNL*****************RNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSVAEH*************************************************
MLDSDDDNSSV*********************EKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLS********EIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLG*****TRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSS********SREEYIHLQGLKGKILNQ***********************LFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRK*****************K******************************VNV*****
******************************QLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEK************REEYIHLQGLKGKILNQVRNLSVE*********DLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQRMLSEGRNVGHYAVNVDDDEV
****************************EVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSN*VATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLE**************EEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQRMLSEGRNVGHYA*N******
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MLDSDDDNSSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQRMLSEGRNVGHYAVNVDDDEV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query428 2.2.26 [Sep-21-2011]
Q5S1U6450 Interferon-related develo yes no 0.880 0.837 0.282 1e-28
O00458451 Interferon-related develo yes no 0.878 0.833 0.274 9e-27
P19182449 Interferon-related develo yes no 0.878 0.837 0.277 1e-26
P20695449 Interferon-related develo yes no 0.878 0.837 0.272 7e-25
Q12894506 Interferon-related develo no no 0.873 0.739 0.259 3e-13
>sp|Q5S1U6|IFRD1_PIG Interferon-related developmental regulator 1 OS=Sus scrofa GN=IFRD1 PE=2 SV=1 Back     alignment and function desciption
 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/410 (28%), Positives = 185/410 (45%), Gaps = 33/410 (8%)

Query: 9   SSVSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTL 68
           S  S  S+   D   V   E  Q + +  L   +D   +K   TR+ AL  I  A  + +
Sbjct: 54  SGYSDPSSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASRM 113

Query: 69  QHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPIS 128
            ++F+ ++  TL       +K+G S E   A+    +L + +G G  S E+L+ ++ P+ 
Sbjct: 114 LYEFILERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEVLK-TLGPVL 172

Query: 129 QALKSGFDSSKIA--SLLECLAVITFVGGNDPEETERTMQIMWQIVHPKL----GSNVVA 182
           + +     +S  A  +   C  V  F+  +D  E   T+Q +  I          SNV+ 
Sbjct: 173 KKIICDGTASIQARQTCATCFGVCCFIATDDITELYSTLQCLENIFTKSYLKEKDSNVIC 232

Query: 183 TRPSAPIITAMVSAWSFLLTTMDGCSLD--SKKWQQSISYFSTLLDKDDRSIRIAAGEAL 240
           + P+  +  + + AW+ LLT    C L    KK +  +    +LL  DD ++RIAAGE+L
Sbjct: 233 STPNTALHISSLLAWTLLLTI---CPLSEVKKKLEMHVHKLPSLLSSDDVNMRIAAGESL 289

Query: 241 ALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTS 300
           AL+ E          A+G    S   Y  ++ L       +R L+ + G K  AK D   
Sbjct: 290 ALLFEL---------ARGME--SDFFYEDMESLT----QMLRALATD-GNKHRAKVDKRK 333

Query: 301 QRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEF 360
           QR++F+DIL  +E    P  + K G E +    W +    +  K  LG G   H+Q NEF
Sbjct: 334 QRSVFRDILRAVEERDFPTETVKFGPERMYIDCWVKKRTYDTFKEILGSGMQYHLQSNEF 393

Query: 361 LHDVFGFTPKRKY--LSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQR 408
           L +VF   P       ++    IS  ++ +Y   NS   KART+  +K R
Sbjct: 394 LRNVFELGPPVMLDAATLKTMKISRFERHLY---NSAAFKARTKARSKCR 440
Could play a role in regulating gene activity in the proliferative and/or differentiative pathways induced by NGF. May be an autocrine factor that attenuates or amplifies the initial ligand-induced signal.
Sus scrofa (taxid: 9823)
>sp|O00458|IFRD1_HUMAN Interferon-related developmental regulator 1 OS=Homo sapiens GN=IFRD1 PE=1 SV=4 Back     alignment and function description
>sp|P19182|IFRD1_MOUSE Interferon-related developmental regulator 1 OS=Mus musculus GN=Ifrd1 PE=2 SV=2 Back     alignment and function description
>sp|P20695|IFRD1_RAT Interferon-related developmental regulator 1 OS=Rattus norvegicus GN=Ifrd1 PE=2 SV=1 Back     alignment and function description
>sp|Q12894|IFRD2_HUMAN Interferon-related developmental regulator 2 OS=Homo sapiens GN=IFRD2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
255538078448 conserved hypothetical protein [Ricinus 0.962 0.919 0.758 0.0
449447061442 PREDICTED: interferon-related developmen 0.955 0.925 0.757 0.0
449515089442 PREDICTED: LOW QUALITY PROTEIN: interfer 0.955 0.925 0.752 0.0
225458824446 PREDICTED: interferon-related developmen 0.941 0.903 0.773 0.0
224127278430 predicted protein [Populus trichocarpa] 0.953 0.948 0.716 1e-175
224063451437 predicted protein [Populus trichocarpa] 0.953 0.933 0.735 1e-171
356514485448 PREDICTED: interferon-related developmen 0.957 0.915 0.694 1e-169
351722189449 uncharacterized protein LOC100305376 [Gl 0.955 0.910 0.682 1e-167
356552260451 PREDICTED: interferon-related developmen 0.946 0.898 0.686 1e-165
356564123448 PREDICTED: interferon-related developmen 0.946 0.904 0.691 1e-165
>gi|255538078|ref|XP_002510104.1| conserved hypothetical protein [Ricinus communis] gi|223550805|gb|EEF52291.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/419 (75%), Positives = 366/419 (87%), Gaps = 7/419 (1%)

Query: 16  TMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEK 75
           TM+SDR SV GTEEVQ++KD+LLD+ALDALYEKRG+TREKAL+SIIEAFN+ LQHQF+EK
Sbjct: 29  TMKSDRASVLGTEEVQVDKDSLLDQALDALYEKRGATREKALASIIEAFNSNLQHQFLEK 88

Query: 76  KFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGF 135
           KFATLLHQCL+ IK+GSS+EIALASHAIGLLALTVG G+N+REILE+SV PISQALKSG 
Sbjct: 89  KFATLLHQCLNCIKKGSSKEIALASHAIGLLALTVGCGDNAREILEDSVTPISQALKSGS 148

Query: 136 DSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVS 195
           +S+K ASLLECLAV+TFVGGN+P ETER+MQIMWQ+V PKLGSNV A +PSAP+I A+VS
Sbjct: 149 ESTKTASLLECLAVVTFVGGNEPTETERSMQIMWQLVRPKLGSNVAAAKPSAPVIAAVVS 208

Query: 196 AWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGSLEKFSSE 255
           AW+FLLTTMDG  +D K WQ+SISY S LLDKDDRS+RIAAGEALALI E GSLEKF+ E
Sbjct: 209 AWAFLLTTMDGWKIDPKDWQESISYLSGLLDKDDRSVRIAAGEALALIFEIGSLEKFAGE 268

Query: 256 AKGSND-------GSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDI 308
            K S+D        SRE  +H+QGLK K+LNQVRNLS EAGGKGS KKDL +QRNLFKD+
Sbjct: 269 NKDSDDLPVQGVNKSREVMVHIQGLKSKVLNQVRNLSAEAGGKGSTKKDLNTQRNLFKDV 328

Query: 309 LEFLEYGYCPETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFT 368
           LEFLEYGYCPETS KIGG+SL+TS WSQ IQLNFLKHFLGGGF+KHMQ+NE LHDVFGF 
Sbjct: 329 LEFLEYGYCPETSMKIGGDSLQTSTWSQWIQLNFLKHFLGGGFIKHMQDNELLHDVFGFV 388

Query: 369 PKRKYLSVAEHHISSTDKRMYKSPNSVVNKARTQKLNKQRMLSEGRNVGHYAVNVDDDE 427
           PK+K L   EH +SS +KRM++SPNSV+NKARTQ LNKQRMLS+ RNVGH+AVN  D+E
Sbjct: 389 PKKKLLQGVEHQMSSCEKRMFRSPNSVLNKARTQFLNKQRMLSKDRNVGHFAVNSGDEE 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449447061|ref|XP_004141288.1| PREDICTED: interferon-related developmental regulator 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449515089|ref|XP_004164582.1| PREDICTED: LOW QUALITY PROTEIN: interferon-related developmental regulator 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225458824|ref|XP_002285282.1| PREDICTED: interferon-related developmental regulator 1 [Vitis vinifera] gi|302142206|emb|CBI19409.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224127278|ref|XP_002320034.1| predicted protein [Populus trichocarpa] gi|222860807|gb|EEE98349.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224063451|ref|XP_002301151.1| predicted protein [Populus trichocarpa] gi|222842877|gb|EEE80424.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514485|ref|XP_003525936.1| PREDICTED: interferon-related developmental regulator 1-like [Glycine max] Back     alignment and taxonomy information
>gi|351722189|ref|NP_001238259.1| uncharacterized protein LOC100305376 [Glycine max] gi|254750765|gb|ACT80135.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356552260|ref|XP_003544486.1| PREDICTED: interferon-related developmental regulator 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356564123|ref|XP_003550306.1| PREDICTED: interferon-related developmental regulator 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query428
TAIR|locus:2199231441 SAT32 "SALT-TOLERANCE 32" [Ara 0.929 0.902 0.623 2e-136
UNIPROTKB|Q5S1U6450 IFRD1 "Interferon-related deve 0.855 0.813 0.269 9e-23
UNIPROTKB|F1NXH4434 IFRD1 "Uncharacterized protein 0.471 0.465 0.257 1.2e-21
UNIPROTKB|F1MN39450 IFRD1 "Uncharacterized protein 0.855 0.813 0.264 2.2e-21
MGI|MGI:1316717449 Ifrd1 "interferon-related deve 0.855 0.815 0.264 2.4e-20
UNIPROTKB|O00458451 IFRD1 "Interferon-related deve 0.855 0.811 0.262 4.4e-20
UNIPROTKB|E2R3H7450 IFRD1 "Uncharacterized protein 0.859 0.817 0.261 1.8e-19
FB|FBgn0051694425 CG31694 [Drosophila melanogast 0.850 0.856 0.254 3.3e-19
UNIPROTKB|Q12894506 IFRD2 "Interferon-related deve 0.831 0.703 0.242 1.1e-18
RGD|2867449 Ifrd1 "interferon-related deve 0.859 0.819 0.261 2.3e-18
TAIR|locus:2199231 SAT32 "SALT-TOLERANCE 32" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1336 (475.4 bits), Expect = 2.0e-136, P = 2.0e-136
 Identities = 255/409 (62%), Positives = 330/409 (80%)

Query:    26 GTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCL 85
             G +EV + KD LLD++LDALYEKR STRE+AL++I++AFN+ LQ++FVEKKFATLLHQCL
Sbjct:    37 GMDEVTVLKDALLDQSLDALYEKRSSTREQALATIVDAFNSDLQYEFVEKKFATLLHQCL 96

Query:    86 SSIKRGSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDSSKIASLLE 145
                K+GS++E +LA+H IGLLALTVG G++++E+LEESV P+SQALKSG +  KI S+LE
Sbjct:    97 HCTKKGSTKETSLATHVIGLLALTVGLGDHAQEVLEESVTPLSQALKSGREILKITSILE 156

Query:   146 CLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWSFLLTTMD 205
             CLAVITFVGGNDPE+TE++MQI+WQ++HPKLGSNVVAT+PS  +I+A+VS+W+FLLTT+D
Sbjct:   157 CLAVITFVGGNDPEQTEKSMQIIWQMIHPKLGSNVVATKPSPAVISAVVSSWAFLLTTVD 216

Query:   206 GCSLDSKKWQQSISYFSTLLDKDDRSIRXXXXXXXXXXXXTGSLEKFSSEAKGSNDGS-- 263
               +L  K +Q++++Y STLL+KDDRS+R             G+LEKF++E KGS +GS  
Sbjct:   217 RWTLGPKIFQETVTYLSTLLEKDDRSVRIAAGEALAVIYELGTLEKFAAEVKGSANGSVK 276

Query:   264 -----REEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCP 318
                  +E  +H+ GLK K+  QVR LSVEAGGKGSAKKDL +QRNLFKD++EFLE GY P
Sbjct:   277 EGGVSQEALMHMHGLKAKVTKQVRELSVEAGGKGSAKKDLNTQRNLFKDLVEFLEDGYAP 336

Query:   319 ETSTKIGGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYLSVAE 378
             ETSTK+GG+ L+TS W Q+IQLN+LKHFLGGGF+KHMQENEFLHDVF FTPK+    +  
Sbjct:   337 ETSTKVGGDYLQTSTWYQMIQLNYLKHFLGGGFIKHMQENEFLHDVFSFTPKK----IGG 392

Query:   379 HHISSTDKRMYKSPNSVVNKARTQKLNKQRMLSEGRNVGHYAVNVDDDE 427
               +S+ +KR++KSPNS +NKARTQ L KQRML++  NVGHYA    ++E
Sbjct:   393 GKLSNDEKRLFKSPNSALNKARTQFLAKQRMLAKNMNVGHYAATAMEEE 441
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0009651 "response to salt stress" evidence=IMP
UNIPROTKB|Q5S1U6 IFRD1 "Interferon-related developmental regulator 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXH4 IFRD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MN39 IFRD1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1316717 Ifrd1 "interferon-related developmental regulator 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O00458 IFRD1 "Interferon-related developmental regulator 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R3H7 IFRD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0051694 CG31694 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q12894 IFRD2 "Interferon-related developmental regulator 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|2867 Ifrd1 "interferon-related developmental regulator 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014952001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (449 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
pfam05004309 pfam05004, IFRD, Interferon-related developmental 5e-67
pfam0483654 pfam04836, IFRD_C, Interferon-related protein cons 2e-08
>gnl|CDD|218375 pfam05004, IFRD, Interferon-related developmental regulator (IFRD) Back     alignment and domain information 
 Score =  215 bits (550), Expect = 5e-67
 Identities = 107/326 (32%), Positives = 158/326 (48%), Gaps = 33/326 (10%)

Query: 4   SDDDNSSV----------SSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTR 53
           SDDD+SS            S  +M  D  S+   E  Q + +  L EALD   +K   TR
Sbjct: 1   SDDDSSSDTASILGCMSLLSPGSMEEDGSSILDEEGSQEDLEEKLKEALDDATDKSAKTR 60

Query: 54  EKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYG 113
           ++AL +I  A        F+ ++ ATL+  C   +K+G S E ALA+   GLL L +G G
Sbjct: 61  QEALEAIRLALATRYLPDFILERKATLMDLCEKCLKKGKSEEQALAARLAGLLCLQLGPG 120

Query: 114 ENSREILEESVAPISQALKSGFDSSKI-ASLLECLAVITFVGGNDPEETERT---MQIMW 169
             + E+L+E   P++  L  G    K   S   CL ++TFV  +D EE E      +I++
Sbjct: 121 FEAEELLKELEQPLNTLLNDGSAGPKARTSCATCLGLLTFVACSDIEELESNLKCFEIIF 180

Query: 170 QIVHPKLG--SNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDK 227
            I + K    + VV T P   ++ A + AW  LLT +   +L  K          TLL  
Sbjct: 181 AISYLKGDGTTPVVNTAPDEGLVGAALQAWGLLLTIVPSWTL-EKILATHQPKLPTLLSS 239

Query: 228 DDRSIRIAAGEALALILETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVE 287
           DD  +RIAAGE LAL+ E           +   +   EE +        +L+Q+R L+ +
Sbjct: 240 DDLDVRIAAGETLALLFELA---------RDEEEDFVEEDME------ALLSQLRQLATD 284

Query: 288 AGGKGSAKKDLTSQRNLFKDILEFLE 313
           +  K  AKKD  +QR+ F+D+L F+E
Sbjct: 285 S-SKYRAKKDRRAQRSTFRDVLRFVE 309

Interferon-related developmental regulator (IFRD1) is the human homologue of the rat early response protein PC4 and its murine homologue TIS7. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary to muscle differentiation and that it might have a role in signal transduction. This family also contains IFRD2 and its murine equivalent SKMc15 which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis. Length = 309
>gnl|CDD|203103 pfam04836, IFRD_C, Interferon-related protein conserved region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 428
KOG2842427 consensus Interferon-related protein PC4 like [Cyt 100.0
PF05004309 IFRD: Interferon-related developmental regulator ( 100.0
PF0483654 IFRD_C: Interferon-related protein conserved regio 99.51
KOG2842427 consensus Interferon-related protein PC4 like [Cyt 97.71
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 97.43
PRK09687280 putative lyase; Provisional 97.06
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 95.8
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 95.35
KOG1820 815 consensus Microtubule-associated protein [Cytoskel 94.97
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 94.72
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.64
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 94.41
KOG2171 1075 consensus Karyopherin (importin) beta 3 [Nuclear s 94.27
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 93.88
PF05536 543 Neurochondrin: Neurochondrin 93.17
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 93.08
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 93.05
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 92.57
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 92.36
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 92.21
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 92.03
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 91.6
KOG12481176 consensus Uncharacterized conserved protein [Funct 91.42
PRK09687280 putative lyase; Provisional 91.38
KOG1824 1233 consensus TATA-binding protein-interacting protein 91.35
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 91.32
PF05004309 IFRD: Interferon-related developmental regulator ( 90.62
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 90.45
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 90.11
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 89.91
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 89.86
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 89.81
KOG1241 859 consensus Karyopherin (importin) beta 1 [Nuclear s 89.06
PF05804708 KAP: Kinesin-associated protein (KAP) 88.99
KOG2023 885 consensus Nuclear transport receptor Karyopherin-b 88.73
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 88.46
KOG1824 1233 consensus TATA-binding protein-interacting protein 87.5
KOG1242569 consensus Protein containing adaptin N-terminal re 87.17
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 87.03
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 86.23
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 85.99
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 85.31
PTZ00429 746 beta-adaptin; Provisional 85.17
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 84.81
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 80.36
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-72  Score=554.38  Aligned_cols=382  Identities=27%  Similarity=0.343  Sum_probs=339.4

Q ss_pred             cccccccccCCcccCCCccchhchhhhHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcC
Q 014240           11 VSSTSTMRSDRMSVSGTEEVQLEKDTLLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKR   90 (428)
Q Consensus        11 ~~S~~t~~sd~~s~~~~~~~~~~~~~~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikk   90 (428)
                      -+..+|+.+|.+++.++.+.+.|.++++.+.+|....|.++||+++|+.|+.+++.+..++|+.++++||.+.++++++|
T Consensus        35 ~S~~~~~~ed~~~il~~s~~~~dl~~~~~d~lde~~dk~AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k  114 (427)
T KOG2842|consen   35 GSMDSTSAEDGSGILDESGTQEDLEEKLKDDLDEVKDKSAKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNK  114 (427)
T ss_pred             ccccccccccchhhhcccccHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcC
Confidence            56778888899999888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhHheeecCCCCchHHHHHhhhHHHHHHhhcCCCh-HHHHHHHHHHHHHHHHcCCChHHHHHHHHH--
Q 014240           91 GSSREIALASHAIGLLALTVGYGENSREILEESVAPISQALKSGFDS-SKIASLLECLAVITFVGGNDPEETERTMQI--  167 (428)
Q Consensus        91 g~~~E~~lA~~~l~Ll~l~lg~~~~~eei~~~~~~~L~~~l~d~s~~-~~r~~~~~aLai~~fv~~~d~~~~~~~m~~--  167 (428)
                      |+.+|+.+|+.+++++|+|+|++..++++..+..|.+..++.+.+.+ ..|+.|+.|||++|++.+.|+++...++.+  
T Consensus       115 ~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~  194 (427)
T KOG2842|consen  115 PKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLE  194 (427)
T ss_pred             CccHHHHHHHHHHHHHHHhccCcchhhHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998876 789999999999999999998887766655  


Q ss_pred             -HHHHhccCC--CCccccCCCCHHHHHHHHHHHHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHH
Q 014240          168 -MWQIVHPKL--GSNVVATRPSAPIITAMVSAWSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALIL  244 (428)
Q Consensus       168 -l~~i~~~~~--g~~~~a~~~~~~l~~AAL~aW~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~  244 (428)
                       .|..++..+  +..+++ .+...++.+|+.+|+++||+++..... ...+.+.|+++.+|.+.++++|+||||++|++|
T Consensus       195 ~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~a~~Lti~~~~~~~-~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~  272 (427)
T KOG2842|consen  195 ESFGAVYLEDDETVVVCA-CQNLGLLLTCLTAWSLLLTICPEALSE-QLDAALAPKLPLLLSSERVNERIAAGETLALLF  272 (427)
T ss_pred             HHHHHhhcccCCCccccc-cchhHHHHHHHHHHHHHHHcCccchhh-HHHHHhccchHHHhccchhhhhhhhhhhHHHHH
Confidence             455444333  233333 356689999999999999999887654 334457799999999999999999999999999


Q ss_pred             HhcccccccccccCCCCCChhhhhhhhchHHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHHHHHHHhcCCCCceeEEE
Q 014240          245 ETGSLEKFSSEAKGSNDGSREEYIHLQGLKGKILNQVRNLSVEAGGKGSAKKDLTSQRNLFKDILEFLEYGYCPETSTKI  324 (428)
Q Consensus       245 E~~~~~~~~~e~~~~~d~~~~~y~~~~~~~~~l~~~l~~La~d~s~K~~aKkDrk~qRs~FRdIl~~iE~g~~Pe~~ik~  324 (428)
                      |+.+...+               .+..++.++|++.|+.|++| |+|+++|||||.||++||+|+++||++++|+++|||
T Consensus       273 e~~q~~~~---------------~f~~~d~e~l~~~lr~latd-ssKs~~kkdkR~qr~~fr~vl~~iee~~~pe~sVRf  336 (427)
T KOG2842|consen  273 ELAQDSEF---------------DFIYPDMEQLLSTLRDLATD-SSKSRAKKDRRVQRSVFRDVLQTIEERDIPEESVRI  336 (427)
T ss_pred             HHHhcccc---------------cccCCCHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHhcccCchhheee
Confidence            99874221               12234678999999999998 699999999999999999999999999999999999


Q ss_pred             cCeeEEEchhHHHHHHHHHHHHhhhhHHhhhhhChhHHhhhCCCcccccc---ccccccCChhhhhhccCCCchhhhHhh
Q 014240          325 GGESLKTSNWSQLIQLNFLKHFLGGGFVKHMQENEFLHDVFGFTPKRKYL---SVAEHHISSTDKRMYKSPNSVVNKART  401 (428)
Q Consensus       325 g~e~L~idsW~~~~ql~~lr~~Lg~G~~~Hl~~N~~lrdif~l~p~~~~~---~~~~~~~s~~ek~~~~s~nsa~~KaRt  401 (428)
                      |+++|++|||.+++||++||.+||+||+.|||+|+|||+|||++|++...   ..+.+|.+++|+|+|   |+|+||+||
T Consensus       337 G~etl~LDSW~~~~~Y~~~~~VLGsGm~~~L~~nEflRdvF~lg~~~~~l~~~~~~~~K~sr~erHl~---naAAfKaRt  413 (427)
T KOG2842|consen  337 GQETLYLDSWAKKLRYDTFKEVLGSGMSEQLQKNEFLRDVFGLGGPPRALDAAFLKDNKDSRFERHLY---NAAAFKART  413 (427)
T ss_pred             cceeeehhHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHHHhcCCCCCCcccchhcccchHHHHHHHh---hhhhHHHHh
Confidence            99999999999999999999999999999999999999999998655442   246778999999998   999999999


Q ss_pred             HHHHhhhhhhhc
Q 014240          402 QKLNKQRMLSEG  413 (428)
Q Consensus       402 ~~r~K~R~~~~~  413 (428)
                      +.|+|+|..++.
T Consensus       414 ~~R~k~RDKRsd  425 (427)
T KOG2842|consen  414 KARSKDRDKRAD  425 (427)
T ss_pred             Hhhhhhhhhhhc
Confidence            999999987654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF04836 IFRD_C: Interferon-related protein conserved region; InterPro: IPR006921 This domain, primarily C-terminal, is found in a family of proteins thought to be involved in regulating gene activity in the proliferative and/or differentiative pathways induced by NGF [] Back     alignment and domain information
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query428
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 67/421 (15%), Positives = 115/421 (27%), Gaps = 119/421 (28%)

Query: 27  TEEVQLEKDTLL-DEALDALY------EKRGSTREKALSSIIEAFNNTLQHQFVEKKFAT 79
           TE+ Q    T +  E  D LY       K   +R +    + +A       + V      
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV------ 153

Query: 80  LLH-------QCLSSIKRGSSREIALASHAI------GLLALTVGYGENSREILEESVAP 126
           L+          ++             S+ +       +  L +    +   +LE     
Sbjct: 154 LIDGVLGSGKTWVAL--------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE----- 200

Query: 127 ISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPK----LGSNVVA 182
           + Q L    D +   S  +  + I               +++    +      L  NV  
Sbjct: 201 MLQKLLYQIDPN-WTSRSDHSSNIKL---RIHSIQAELRRLLKSKPYENCLLVL-LNVQ- 254

Query: 183 TRPSAPIITAMVSAWSF------LLTTMDGCSLDS----KKWQQSISYFSTLLDKDDRSI 232
              +A    A      F      LLTT      D          S+ + S  L  D+   
Sbjct: 255 ---NAKAWNA------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--- 302

Query: 233 RIAAGEALALILETGSLEKFSSEAKGSN------------DG-SR-EEYIHLQGLKGKIL 278
                  L   L+    +    E   +N            DG +  + + H+   K   L
Sbjct: 303 ---VKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK---L 355

Query: 279 NQVRNLSVEAGGKGSAKKDLTS--QRNLFKDILEFLEYGYCPETSTKIGGESLKTSNWSQ 336
             +   S+           L     R +F  +  F      P  S  I    L    W  
Sbjct: 356 TTIIESSLNV---------LEPAEYRKMFDRLSVF------PP-SAHIPTILLSLI-WFD 398

Query: 337 LI---QLNFLKHFLGGGFV-KHMQENEF-LHDVFGFTPKRKYLSVAEHHISSTDKRMYKS 391
           +I    +  +        V K  +E+   +  ++    K K  +    H S  D   Y  
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRSIVDH--YNI 455

Query: 392 P 392
           P
Sbjct: 456 P 456

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 98.57
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 98.27
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 97.66
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 97.63
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.62
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 97.62
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.59
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.55
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.53
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.53
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 97.51
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.46
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.44
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.44
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 97.37
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 97.31
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 97.26
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.26
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.25
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.25
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 97.22
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 97.14
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 97.1
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 97.09
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 97.08
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 97.07
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.06
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.01
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.98
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 96.97
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.95
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 96.9
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 96.86
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 96.73
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 96.73
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.72
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 96.69
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 96.55
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.45
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 96.36
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 96.35
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 96.14
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 95.86
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 95.74
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 95.67
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 95.26
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 95.07
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 94.95
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 94.4
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 94.2
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 94.18
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 94.07
3now_A 810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 93.66
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 93.52
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 93.43
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 93.42
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 93.21
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 93.09
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 92.94
3nmz_A458 APC variant protein; protein-protein complex, arma 92.87
3nmz_A458 APC variant protein; protein-protein complex, arma 92.86
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 92.46
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 90.29
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 89.12
2db0_A253 253AA long hypothetical protein; heat repeats, hel 87.34
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 86.93
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 86.84
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 86.6
1xm9_A 457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 85.85
3l6x_A 584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 85.66
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 84.16
4gmo_A 684 Putative uncharacterized protein; ARM, heat, solen 81.83
3oc3_A 800 Helicase MOT1, MOT1; regulation of transcription, 81.33
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 81.02
2x1g_F971 Cadmus; transport protein, developmental protein, 80.74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
Probab=98.57  E-value=6.2e-06  Score=77.08  Aligned_cols=189  Identities=16%  Similarity=0.212  Sum_probs=139.4

Q ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhh-cCCCHHHHHHHHHHHhHheeecCCCCchHH
Q 014240           40 EALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSI-KRGSSREIALASHAIGLLALTVGYGENSRE  118 (428)
Q Consensus        40 ~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~si-kkg~~~E~~lA~~~l~Ll~l~lg~~~~~ee  118 (428)
                      .+.+.+..|.-+.|.+|+..|...+....  .+....+..++..+.+.+ |.....=+..|+.+++.++-.+|.  .-+.
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~--~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~--~~~~   94 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHP--KLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK--RFSN   94 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCS--SBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG--GGHH
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCC--CCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh--hHHH
Confidence            46677888999999999999988876521  233344567888888888 455566678999999999988874  2345


Q ss_pred             HHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHHHH
Q 014240          119 ILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSAWS  198 (428)
Q Consensus       119 i~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~aW~  198 (428)
                      ....+.|+|...+.|. ....|.+++.||.-+  +....   +...|+.+...+..          .++.+-..++..-+
T Consensus        95 ~~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~--~~~~~---~~~ll~~l~~~l~~----------~~~~vr~~~l~~l~  158 (242)
T 2qk2_A           95 YASACVPSLLEKFKEK-KPNVVTALREAIDAI--YASTS---LEAQQESIVESLSN----------KNPSVKSETALFIA  158 (242)
T ss_dssp             HHHHHHHHHHHGGGCC-CHHHHHHHHHHHHHH--HTTSC---HHHHHHHHHHHTTC----------SCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHH--HHcCC---HHHHHHHHHHHHcC----------CChHHHHHHHHHHH
Confidence            5667888888887774 456777777776644  33333   34556666665533          45788888888888


Q ss_pred             HhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHHHHhcc
Q 014240          199 FLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALILETGS  248 (428)
Q Consensus       199 lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl~E~~~  248 (428)
                      .++....+.......+...+|.|..+|+..+.+||-+|-++|+.++....
T Consensus       159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            88877755434445678899999999999999999999999999998653
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query428
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.62
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.52
d1b3ua_588 Constant regulatory domain of protein phosphatase 97.37
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 96.86
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.8
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 96.07
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.95
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 95.78
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 95.75
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.62
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 95.5
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.36
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.24
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 95.17
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 95.14
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.04
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 94.91
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 94.84
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 94.73
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 93.54
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 93.42
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 93.3
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 93.16
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 93.02
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 92.38
d1xm9a1 457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 88.39
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.0011  Score=66.12  Aligned_cols=183  Identities=15%  Similarity=0.180  Sum_probs=120.8

Q ss_pred             hHHHHHHHhcccchHHHHHHHHHHHHHHHhhhhhhhhhhhHhHHHHHHHhhhcCCCHHHHHHHHHHHhHheeecCCCCch
Q 014240           37 LLDEALDALYEKRGSTREKALSSIIEAFNNTLQHQFVEKKFATLLHQCLSSIKRGSSREIALASHAIGLLALTVGYGENS  116 (428)
Q Consensus        37 ~l~~~id~l~eKr~stR~~aL~~l~~al~~~~~~~fi~~~~~TL~~~~~~sikkg~~~E~~lA~~~l~Ll~l~lg~~~~~  116 (428)
                      .+..+.+.+.++....|.+++..+... .+.+..+++.+   .+...+.+.++-....=+..|+++++-++-++|.    
T Consensus       403 ll~~l~~~~~d~~~~~r~~~~~~l~~l-~~~~~~~~~~~---~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~----  474 (588)
T d1b3ua_         403 LLPAIVELAEDAKWRVRLAIIEYMPLL-AGQLGVEFFDE---KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK----  474 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHH-HHHHCGGGCCH---HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHH-HHHcChHhHHH---HHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc----
Confidence            344455556677777888888766543 33344444443   4445566667555443356788999999888883    


Q ss_pred             HHHHHhhhHHHHHHhhcCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhccCCCCccccCCCCHHHHHHHHHH
Q 014240          117 REILEESVAPISQALKSGFDSSKIASLLECLAVITFVGGNDPEETERTMQIMWQIVHPKLGSNVVATRPSAPIITAMVSA  196 (428)
Q Consensus       117 eei~~~~~~~L~~~l~d~s~~~~r~~~~~aLai~~fv~~~d~~~~~~~m~~l~~i~~~~~g~~~~a~~~~~~l~~AAL~a  196 (428)
                      +.....+.|.+.+...+. +...|..++.|++.+.-.++.+. -....|..++....          .+.|.|-.+|+.+
T Consensus       475 ~~~~~~i~~~l~~~~~~~-~~~~R~~~~~~l~~l~~~~~~~~-~~~~ilp~ll~~~~----------D~v~nVR~~a~~~  542 (588)
T d1b3ua_         475 EWAHATIIPKVLAMSGDP-NYLHRMTTLFCINVLSEVCGQDI-TTKHMLPTVLRMAG----------DPVANVRFNVAKS  542 (588)
T ss_dssp             HHHHHHTHHHHHHTTTCS-CHHHHHHHHHHHHHHHHHHHHHH-HHHHTHHHHHHGGG----------CSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcChHH-HHHHHHHHHHHHcC----------CCCHHHHHHHHHH
Confidence            455667888887765444 45678888888887765544221 12344555554332          2557898999999


Q ss_pred             HHHhHhcCCCCccchhhHHhhHHHHHhhhcCCChHHHHHHHHHHHHH
Q 014240          197 WSFLLTTMDGCSLDSKKWQQSISYFSTLLDKDDRSIRIAAGEALALI  243 (428)
Q Consensus       197 W~lLlT~~~~~~~~~~~~~~~l~~L~~lL~s~d~~VRiAAGEaiALl  243 (428)
                      -+.+...++...+.    +...|.|..+++.+|.+||-.|.+++-.|
T Consensus       543 l~~i~~~~~~~~~~----~~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         543 LQKIGPILDNSTLQ----SEVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHGGGSCHHHHH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCcHhHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            88888777654332    34567888888888999999999998765
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure