Citrus Sinensis ID: 014248

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43

MSKISYKVSGHQLWILAFISSIILLATLSRSNVQVDQFSASGIKLKSHNQVPRRNVSKGVDYPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTINTDLSFMKWESPAHVGPRTLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKIDDRVLNRSGNGVVPGNWCSIRGKKKNVESLKNGEELCSASGNNIDAVKPGVYGMKLRALLSELVSDGRGKINQCQEQVYN

ccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccccccccccEEEEEEEEEcccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHHcccccccEEEccccccccccEEEEEEEEcccccEEccccEEEEccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHccccccccHHHHHHHccccccccccccccEEEEEcccccccccccccHHHHHHHHHcccccEEEccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccc

ccccccccccccccEEEHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccHHHHHcccEEEEcccccEEcccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHcccccccccccccccccHHHccccEEEEccccEEEccccEEEEcccccccccEEEEccccEEEEccHHHHEEEEccccHHHHHHHHHHHccccccccEEEEEEccccccccccccccEEEEcccccccccccccHHHHHHHHHcccccEHHcccccccHHHHHHHHHHHHcccccccccccccccccHcccccccccccccccccccccEEccccHHHHHHHHHHHHHccccccHHHHHHcccc

mskisykvsghQLWILAFISSIILLATLsrsnvqvdqfsasgiklkshnqvprrnvskgvdyppvLAYWICGTNGDSKKMLRLLKAIYHprnqyllqldagapeSERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKIStnwdwfiplspldyplmsqdDVLHAftflprdlnfidfttntgwkERLMINrividpnlyykkatpILYAVEtrtnpdafkifggsQWMILSRSFMEYCVQGWDNFPRKLLMYLtnvpyplesyfhtiicnspqfqnstintdlsfmkwespahvgprtltlpdyVEMVTSnkttifarpfeeddpvlekiddrvlnrsgngvvpgnwcsirgkkknveslKNGEELcsasgnnidavkpgvYGMKLRALLSELVSdgrgkinqCQEQVYN

mskisykvsgHQLWILAFISSIILLATLSRSNVQVDQFSasgiklkshnqvprrnvskgvdyppVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTtntgwkerLMINRividpnlyyKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTINTDLSFMKWESPAHVGPRTLTLPDYVEMVTSNKTTifarpfeeddpvlekiddrvlnrsgngvvpgnwcsirgkKKNVESLKNGEELcsasgnnidavkPGVYGMKLRALLSElvsdgrgkinqcqeqvyn

MSKISYKVSGHQLWilafissiillatlsrsNVQVDQFSASGIKLKSHNQVPRRNVSKGVDYPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSalaatlhaaalllKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTINTDLSFMKWESPAHVGPRTLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKIDDRVLNRSGNGVVPGNWCSIRGKKKNVESLKNGEELCSASGNNIDAVKPGVYGMKLRALLSELVSDGRGKINQCQEQVYN

*****YKVSGHQLWILAFISSIILLATLSRSNVQVDQFSASGIKL*********NVSKGVDYPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGA****RAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTINTDLSFMKWESPAHVGPRTLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKIDDRVLNRSGNGVVPGNWCSIRGK*************C*ASGNNIDAVKPGVYGMKLRALLSELV****************

**********HQLWILAFISSIILLATLSRSNVQVDQFSASGIK********************VLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTINTDLSFMKWESPAHVGPRTLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKIDDRVLNRSGNGVVPGNWCSIRGKKKNVESLKNGEELCSASGNNIDAVKPGVYGMKLRALLSELVSD*******CQ*****

********SGHQLWILAFISSIILLATLSRSNVQVDQFSASGIKLKSHNQVPRRNVSKGVDYPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTINTDLSFMKWESPAHVGPRTLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKIDDRVLNRSGNGVVPGNWCSIRGKKKNVESLKNGEELCSASGNNIDAVKPGVYGMKLRALLSELVSDGRGKINQCQEQV**

iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		428	2.2.26 [Sep-21-2011]
Q5QQ56		950	Xylosyltransferase 1 OS=C	yes	no	0.577	0.26	0.265	9e-20
Q9EPI1		821	Xylosyltransferase 1 (Fra	yes	no	0.609	0.317	0.255	2e-19
Q5QQ50		865	Xylosyltransferase 2 OS=C	no	no	0.644	0.319	0.280	4e-19
Q5QQ57		945	Xylosyltransferase 1 OS=P	yes	no	0.577	0.261	0.261	5e-19
Q86Y38		959	Xylosyltransferase 1 OS=H	yes	no	0.577	0.257	0.261	7e-19
Q811B1		953	Xylosyltransferase 1 OS=M	yes	no	0.607	0.272	0.259	1e-18
Q9EPL0		865	Xylosyltransferase 2 OS=M	no	no	0.644	0.319	0.276	3e-18
Q5QQ54		843	Xylosyltransferase OS=Cio	N/A	no	0.609	0.309	0.278	1e-17
Q5QQ49		867	Xylosyltransferase 2 OS=B	no	no	0.621	0.306	0.267	1e-17
Q9EPI0		864	Xylosyltransferase 2 OS=R	no	no	0.630	0.312	0.266	2e-17

>sp\|Q5QQ56\|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1	Back alignment and function desciption

 Score = 98.6 bits (244), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 128/279 (45%), Gaps = 32/279 (11%)

Query: 77  SKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAID 136
           S+++ R+ KAIYH  + Y + +D  +    R  L    Q       +GNV V     A  
Sbjct: 328 SRQLQRMFKAIYHKDHFYYIHVDKRSNYLHRQVLQFARQ-------YGNVRVTPWRMATI 380

Query: 137 KMGVSALAATLHAAALLLKIST-NWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDF 195
             G S L+  L +   LL+++   WD+FI LS  DYP+ + D ++ AF    RD+NF+  
Sbjct: 381 WGGASLLSTYLQSMRDLLEMTDWPWDFFINLSAADYPIRTNDQLV-AFLSRYRDMNFLKS 439

Query: 196 --TTNTGWKERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFM 253
               N  +  +  ++R+ ++ + +       ++ +  R  P+   + GGS W +L+R F+
Sbjct: 440 HGRDNARFIRKQGLDRLFLECDAH-------MWRLGDRRIPEGIAVDGGSDWFLLNRKFV 492

Query: 254 EYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTINTDLSFMKWESP---- 309
           EY     D+   K+  + +    P ES+FHT++ NSP   ++ ++ +L    W       
Sbjct: 493 EYVTFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNWNRKLGCK 551

Query: 310 ---AHV------GPRTLTLPDYVEMVTSNKTTIFARPFE 339
               H+       P      D+     + + T FAR FE
Sbjct: 552 CQYKHIVDWCGCSPNDFKPQDFHRFQQTARPTFFARKFE 590

Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes.
Canis familiaris (taxid: 9615)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 6

>sp\|Q9EPI1\|XYLT1_RAT Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ50\|XYLT2_CANFA Xylosyltransferase 2 OS=Canis familiaris GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ57\|XYLT1_PANTR Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q86Y38\|XYLT1_HUMAN Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1	Back alignment and function description

>sp\|Q811B1\|XYLT1_MOUSE Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1	Back alignment and function description

>sp\|Q9EPL0\|XYLT2_MOUSE Xylosyltransferase 2 OS=Mus musculus GN=Xylt2 PE=2 SV=3	Back alignment and function description

>sp\|Q5QQ54\|XYLT_CIOSA Xylosyltransferase OS=Ciona savignyi GN=xt PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ49\|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q9EPI0\|XYLT2_RAT Xylosyltransferase 2 OS=Rattus norvegicus GN=Xylt2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		428
60657606		422	secondary cell wall-related glycosyltran	0.953	0.966	0.576	1e-123
356523099		423	PREDICTED: xylosyltransferase 1-like [Gl	0.967	0.978	0.539	1e-118
224097432		401	predicted protein [Populus trichocarpa]	0.834	0.890	0.604	1e-115
255549518		403	acetylglucosaminyltransferase, putative	0.922	0.980	0.557	1e-113
148906421		423	unknown [Picea sitchensis]	0.957	0.969	0.443	1e-102
225424176		401	PREDICTED: xylosyltransferase 2 [Vitis v	0.834	0.890	0.470	1e-95
307136415		396	acetylglucosaminyltransferase [Cucumis m	0.834	0.901	0.475	5e-95
449434548		396	PREDICTED: xylosyltransferase 1-like [Cu	0.836	0.904	0.466	1e-94
255580473		396	acetylglucosaminyltransferase, putative	0.834	0.901	0.442	3e-94
449493418		396	PREDICTED: xylosyltransferase 1-like [Cu	0.836	0.904	0.463	4e-94

>gi\|60657606\|gb\|AAX33324.1\| secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides]	Back alignment and taxonomy information

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/423 (57%), Positives = 310/423 (73%), Gaps = 15/423 (3%)

Query: 2   SKISYKVSGHQLWILAFISSIILLATLSRSNVQVDQFSASGIKLKSHNQ-VPRRNVSKGV 60
           SKIS   SG+ +WILAF  S+++L  LS+S       +A+   L+  +  VP    SKG 
Sbjct: 4   SKISSGNSGYHVWILAFAMSLLILIALSKSWFYDHASAAASEDLQYFSVIVP----SKGR 59

Query: 61  DYPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVF 120
           DYPPVLAYWICGT+GD K+MLRLLKAIYHPRNQYLLQLDA + + ERAEL + VQSE +F
Sbjct: 60  DYPPVLAYWICGTSGDGKRMLRLLKAIYHPRNQYLLQLDAESSDYERAELVVSVQSESLF 119

Query: 121 KAFGNVDVVGASYAIDKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVL 180
           +AFGNV+VVG  +AI++MG SALAA L+AAALLLK+ST+WDWFI LS  DYPL+SQDD+L
Sbjct: 120 QAFGNVNVVGKGFAINEMGSSALAAILNAAALLLKLSTDWDWFINLSVSDYPLVSQDDLL 179

Query: 181 HAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIF 240
           HAFT LPRDLNFI+++ +T   E   IN+IV+DP+L+ +K + + YAVETRT PDAFKIF
Sbjct: 180 HAFTSLPRDLNFINYSNDTAKNEIHKINQIVVDPSLHLQKRSHLYYAVETRTTPDAFKIF 239

Query: 241 GGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTINTD 300
           GGS W+IL+R+FMEYCVQGWDN PRKLLMY +N   PLESYFH+++CNSP+FQN+T++ D
Sbjct: 240 GGSPWLILTRAFMEYCVQGWDNLPRKLLMYFSNTASPLESYFHSVLCNSPEFQNTTVSDD 299

Query: 301 LSFMKWESPAHVGPRTLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKIDDRVLNRSGNGV 360
           L +   E+       T     Y +M+  N    FARPF+ED   L  ID+ VLNR  NG+
Sbjct: 300 LRYNILET------TTDGESPYDKML--NGGAAFARPFKEDAAALNMIDENVLNREPNGL 351

Query: 361 VPGNWCSIRGKKKNVESLK-NGEELCSASGNNIDAVKPGVYGMKLRALLSELVSDGRGKI 419
           VPG WC  +G  K+ E+ K  GE+LCS  G NI+ VKPG YG+KL  LLS++ S+ +   
Sbjct: 352 VPGKWCLDQGMNKSSEASKPPGEDLCSTWG-NINDVKPGSYGIKLAFLLSKIASEEKLTT 410

Query: 420 NQC 422
           +QC
Sbjct: 411 SQC 413

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356523099\|ref\|XP_003530179.1\| PREDICTED: xylosyltransferase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|224097432\|ref\|XP_002310932.1\| predicted protein [Populus trichocarpa] gi\|222850752\|gb\|EEE88299.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255549518\|ref\|XP_002515811.1\| acetylglucosaminyltransferase, putative [Ricinus communis] gi\|223545040\|gb\|EEF46553.1\| acetylglucosaminyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|148906421\|gb\|ABR16364.1\| unknown [Picea sitchensis]	Back alignment and taxonomy information

>gi\|225424176\|ref\|XP_002284096.1\| PREDICTED: xylosyltransferase 2 [Vitis vinifera] gi\|297737724\|emb\|CBI26925.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|307136415\|gb\|ADN34223.1\| acetylglucosaminyltransferase [Cucumis melo subsp. melo]	Back alignment and taxonomy information

>gi\|449434548\|ref\|XP_004135058.1\| PREDICTED: xylosyltransferase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255580473\|ref\|XP_002531062.1\| acetylglucosaminyltransferase, putative [Ricinus communis] gi\|223529357\|gb\|EEF31323.1\| acetylglucosaminyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449493418\|ref\|XP_004159283.1\| PREDICTED: xylosyltransferase 1-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		428
TAIR\|locus:2026356		395	AT1G71070 [Arabidopsis thalian	0.836	0.906	0.428	2.2e-80
TAIR\|locus:2178047		447	AT5G39990 [Arabidopsis thalian	0.871	0.834	0.394	8.7e-79
TAIR\|locus:2147880		434	AT5G15050 [Arabidopsis thalian	0.817	0.806	0.415	1.5e-76
TAIR\|locus:2020748		447	AT1G03520 [Arabidopsis thalian	0.810	0.776	0.427	3.9e-76
TAIR\|locus:2125502		448	AT4G03340 [Arabidopsis thalian	0.808	0.772	0.428	9.3e-75
TAIR\|locus:2124009		421	AT4G27480 [Arabidopsis thalian	0.803	0.817	0.408	2.5e-74
TAIR\|locus:2087125		424	AT3G15350 [Arabidopsis thalian	0.810	0.818	0.402	2.5e-72
TAIR\|locus:505006303		384	AT2G37585 [Arabidopsis thalian	0.719	0.802	0.445	2.9e-70
TAIR\|locus:2076181		417	AT3G24040 [Arabidopsis thalian	0.815	0.836	0.408	3.3e-70
TAIR\|locus:2037065		423	AT1G53100 [Arabidopsis thalian	0.733	0.742	0.394	2.3e-64

TAIR\|locus:2026356 AT1G71070 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 158/369 (42%), Positives = 215/369 (58%)

Query:    55 NVSKGVDYPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKV 114
             ++  G  YPP  AY+I G  GD+ ++ RLL A+YHPRN+YL+ L A A ++ER  L   +
Sbjct:    38 SIRHGAHYPPAFAYYITGGRGDNDRISRLLLAVYHPRNRYLIHLGAEATDAERLALLSDL 97

Query:   115 QSEIVFKAFGNVDVVGASYAIDKMGVSXXXXXXXXXXXXXKISTNWDWFIPLSPLDYPLM 174
             +S     AFGNVDV+G    + + G S             K+   W+WFI LS LDYPL+
Sbjct:    98 KSVPAVNAFGNVDVLGKVDRLSENGASKIASTLHAVSILLKLDPTWNWFIELSALDYPLI 157

Query:   175 SQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYYKKATPILYAVETRTNP 234
             +QDD+ H F  + R LNFID T++  WKE   I  IV+DP LY  + T +  A E R  P
Sbjct:   158 TQDDLSHVFASVNRSLNFIDHTSDLAWKESQRIKPIVVDPALYLARRTQLFTATEKRPTP 217

Query:   235 DAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQN 294
             DAFK+F GS W++LSR F+EYC+ GWDN PR LLMY  NV    E YFHT+ICN+P+F N
Sbjct:   218 DAFKVFTGSPWIVLSRPFLEYCIFGWDNLPRILLMYFNNVILSEECYFHTVICNAPEFSN 277

Query:   295 STINTDLSFMKWESPAHVGPRTLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKIDDRVLN 354
             +T+N DL +M W+SP  + P  LT+ D+ +M  S     FAR F++DDPVL+ +D  +L 
Sbjct:   278 TTVNGDLRYMIWDSPPKMEPHFLTISDFDQMAQSGAA--FARQFKKDDPVLDMVDREILK 335

Query:   355 RSGNGVVPGNWCSIRGKKKNVESLKNGEELCSASGNNIDAVKPGVYGMKLRALLSELVSD 414
             R    V PG WCS               + CS   + ++ VK G    KL   ++  + D
Sbjct:   336 RGRYRVTPGAWCSSHSSWWT--------DPCS-EWDEVNIVKAGPQAKKLDETITNFLDD 386

Query:   415 GRGKINQCQ 423
                + NQC+
Sbjct:   387 LNSQSNQCK 395

GO:0008375 "acetylglucosaminyltransferase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR\|locus:2178047 AT5G39990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147880 AT5G15050 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2020748 AT1G03520 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125502 AT4G03340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124009 AT4G27480 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087125 AT3G15350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006303 AT2G37585 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2076181 AT3G24040 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037065 AT1G53100 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VIII0614	hypothetical protein (401 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		428
PLN03183		421	PLN03183, PLN03183, acetylglucosaminyltransferase	1e-120
pfam02485		242	pfam02485, Branch, Core-2/I-Branching enzyme	9e-63

>gnl\|CDD\|178725 PLN03183, PLN03183, acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

 Score =  355 bits (912), Expect = e-120
 Identities = 173/408 (42%), Positives = 240/408 (58%), Gaps = 23/408 (5%)

Query: 16  LAFISSIILLATLSRSNVQVDQFSASGIKLKSHNQVPRRNVSKGVDYPPVLAYWICGTNG 75
           L  I+SI  +  LSR+N    +F+ S +    H   P        D  P  AY + G+ G
Sbjct: 37  LRTINSIFSIFPLSRTNQTRLEFAESKVNQSPH--PPPV-----QDKLPRFAYLVSGSKG 89

Query: 76  DSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAI 135
           D +K+ R L+A+YHPRNQY++ LD  +P  ER ELA +V+++ +F   GNV ++  +  +
Sbjct: 90  DLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLV 149

Query: 136 DKMGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDF 195
              G + +A TLHA A+LLK S +WDWFI LS  DYPL++QDD++H F+ L R+LNFI+ 
Sbjct: 150 TYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEH 209

Query: 196 TTNTGWKERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEY 255
           T+  GWKE      ++IDP LY    + I +    R+ P AFK+F GS WM+LSRSF+EY
Sbjct: 210 TSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEY 269

Query: 256 CVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTINTDLSFMKWESPAHVGPR 315
           C+ GWDN PR LLMY TN     E YFHT+ICN P+F  + +N DL ++ W++P    P 
Sbjct: 270 CIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPPKQHPH 329

Query: 316 TLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKIDDRVLNRSGNGVVPGNWCSIRGKKKNV 375
           TL+L D  +M+ S     FAR F  DDPVL+KID  +L R      PG WCS        
Sbjct: 330 TLSLNDTEKMIASGAA--FARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCS-------- 379

Query: 376 ESLKNGEELCSASGNNIDAVKPGVYGMKLRALLSELVSDGRGKINQCQ 423
                G+  CS  G +   +KPG    +L+ L+S LV + +   NQC+
Sbjct: 380 -----GKPKCSRVG-DPAKIKPGPGAQRLKGLVSRLVLEAKLGQNQCK 421

Length = 421

>gnl\|CDD\|217062 pfam02485, Branch, Core-2/I-Branching enzyme	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		428
PLN03183		421	acetylglucosaminyltransferase family protein; Prov	100.0
KOG0799		439	consensus Branching enzyme [Carbohydrate transport	100.0
PF02485		244	Branch: Core-2/I-Branching enzyme; InterPro: IPR00	100.0
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	93.34
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	88.98
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	88.9
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	85.78
PRK14716		504	bacteriophage N4 adsorption protein B; Provisional	84.53
PRK11204		420	N-glycosyltransferase; Provisional	84.01
PF08660		170	Alg14: Oligosaccharide biosynthesis protein Alg14	82.62
PRK10063		248	putative glycosyl transferase; Provisional	80.64
cd06437		232	CESA_CaSu_A2 Cellulose synthase catalytic subunit	80.58

>PLN03183 acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=2.2e-111  Score=864.92  Aligned_cols=349  Identities=46%  Similarity=0.867  Sum_probs=337.2

Q ss_pred             CCCCCCeEEEEEEeeCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeec
Q 014248           59 GVDYPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKM  138 (428)
Q Consensus        59 ~~~~p~kiAYLIl~~h~d~~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wg  138 (428)
                      ..+.|||+||||+|||+|.+|++|||++||||+|+||||||+||+..++.+++..++..|++.+++||+|+++++.|+||
T Consensus        73 ~~~~~~r~AYLI~~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WG  152 (421)
T PLN03183         73 VQDKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYR  152 (421)
T ss_pred             CCCCCCeEEEEEEecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccC
Confidence            34569999999999779999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             CccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHccCCCCcceEeeecCCCcceeeeeeeEeeCCcccc
Q 014248          139 GVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRIVIDPNLYY  218 (428)
Q Consensus       139 g~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~~~~~~nFI~~~~~~~wk~~~R~~~~~~dp~ly~  218 (428)
                      |+|||+|||+||+.||+.+.+|||||||||+||||+||+||+|.|+++|+|+|||+++++.+|++.+|++++++||++|.
T Consensus       153 G~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~  232 (421)
T PLN03183        153 GPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYS  232 (421)
T ss_pred             ChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceee
Confidence            99999999999999999989999999999999999999998899999999999999998899999999999999999998


Q ss_pred             ccCccceeecccCCCCCCceeeecceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCchhhhHHhhcCCCCCCcccc
Q 014248          219 KKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNSPQFQNSTIN  298 (428)
Q Consensus       219 ~~k~~i~~~~~kR~~P~~~~l~~GS~W~~LsR~fveyii~~~d~lpr~ll~yf~~t~~pdE~yFqTvl~Ns~~f~~t~vn  298 (428)
                      .+++.++|.+++|.+|+++++|+||+|++|||+|||||+++|||+|++++|||+++++|||+|||||+||+++|+++++|
T Consensus       233 ~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn  312 (421)
T PLN03183        233 TNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVN  312 (421)
T ss_pred             cccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccC
Confidence            88888889999999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             CceeEEecCCCCCCCCcccChhhHHHHHhCCCcceEEeccCCCHHHHHHHHHHHhccCCCCCCCCeeeeccCcccccccc
Q 014248          299 TDLSFMKWESPAHVGPRTLTLPDYVEMVTSNKTTIFARPFEEDDPVLEKIDDRVLNRSGNGVVPGNWCSIRGKKKNVESL  378 (428)
Q Consensus       299 ~nLRyi~W~~~~~~~P~~l~~~D~~~l~~S~~~alFARKF~~d~~vLd~Id~~ll~r~~~~~~~g~W~~~~~~~~~~~~~  378 (428)
                      +|||||+|++++++||++|+++|+++|++|+  ++|||||+.|++|||+||++|++|.+++++|||||.|+         
T Consensus       313 ~nLRyI~W~~~~~~~P~~l~~~D~~~l~~S~--~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~~---------  381 (421)
T PLN03183        313 HDLHYISWDNPPKQHPHTLSLNDTEKMIASG--AAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSGK---------  381 (421)
T ss_pred             CceeEEecCCCCCCCCcccCHHHHHHHHhCC--CccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCCC---------
Confidence            9999999999988999999999999999999  99999999999999999999999999999999999764         


Q ss_pred             cCCCCcccccCCCCCccCCCchHHHHHHHHHHhhcCCCCCccccc
Q 014248          379 KNGEELCSASGNNIDAVKPGVYGMKLRALLSELVSDGRGKINQCQ  423 (428)
Q Consensus       379 ~~~~~~c~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~c~  423 (428)
                          ||||+|| |+++|||||||+||++||++||++++||++||+
T Consensus       382 ----~~c~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~c~  421 (421)
T PLN03183        382 ----PKCSRVG-DPAKIKPGPGAQRLKGLVSRLVLEAKLGQNQCK  421 (421)
T ss_pred             ----CcccccC-CcCccCCCcHHHHHHHHHHHHhchhccccccCC
Confidence                7999999 999999999999999999999999999999996

>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

>PRK14716 bacteriophage N4 adsorption protein B; Provisional	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane []	Back alignment and domain information

>PRK10063 putative glycosyl transferase; Provisional	Back alignment and domain information

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		428
3otk_A		391	Structure And Mechanisim Of Core 2 Beta1,6-N- Acety		6e-06
2gak_A		391	X-ray Crystal Structure Of Murine Leukocyte-type Co		2e-05

>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase Length = 391

Back alignment and structure

Iteration: 1

Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/235 (22%), Positives = 99/235 (42%), Gaps = 24/235 (10%) Query: 82 RLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVS 141 RLL+AIY P+N Y + +D A ES A + + + F NV V ++ + Sbjct: 101 RLLRAIYMPQNFYCIHVDRKAEESFLAAV------QGIASCFDNVFVASQLESVVYASWT 154 Query: 142 XXXXXXXXXXXXXKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGW 201 +++ NW + I LS +D+P+ + +++ + N Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214 Query: 202 KERLMINRIVIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWD 261 +ER V+D L T I+ A P +F GS + +++R ++ Y ++ + Sbjct: 215 EERWKKRYAVVDGKL---TNTGIVKAPPPLKTP----LFSGSAYFVVTREYVGYVLEN-E 266 Query: 262 NFPRKLLMYLTNVPYPLESYFHTI---------ICNSPQFQNSTINTDLSFMKWE 307 N +KL+ + + P E + TI +S ++ S +N F+KW+ Sbjct: 267 NI-QKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQ 320

PyMOL of 3otk

>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2 B1,6-n- Acetylglucosaminyltransferase (c2gnt-l) Length = 391

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		428
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	1e-52

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391	Back alignment and structure

 Score =  180 bits (457), Expect = 1e-52
 Identities = 67/351 (19%), Positives = 129/351 (36%), Gaps = 45/351 (12%)

Query: 31  SNVQVDQFSASGIKLKSHNQVPRRNVSKGVDYPPVLAYWICGTNGDSKKMLRLLKAIYHP 90
           +       +          +     ++K     P +AY I   +   + + RLL+AIY P
Sbjct: 52  TPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFP-IAYSIV-VHHKIEMLDRLLRAIYMP 109

Query: 91  RNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVSALAATLHAA 150
           +N Y + +D  A ES  A +      + +   F NV V     ++     + + A L+  
Sbjct: 110 QNFYCIHVDRKAEESFLAAV------QGIASCFDNVFVASQLESVVYASWTRVKADLNCM 163

Query: 151 ALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERLMINRI 210
             L +++ NW + I L  +D+P+ +  +++        + N          +ER      
Sbjct: 164 KDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYA 223

Query: 211 VIDPNLYYKKATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMY 270
           V+D  L           +     P    +F GS + +++R ++ Y ++  +   +KL+ +
Sbjct: 224 VVDGKLTNTG-------IVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEW 274

Query: 271 LTNVPYPLESYFHTI---------ICNSPQFQNSTINTDLSFMKWE-------------- 307
             +   P E  + TI           +S ++  S +N    F+KW+              
Sbjct: 275 AQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPP 334

Query: 308 --SPAHVGPRTLTLPDYVEMVTSNKTTIFARPFEED-DPVLEKIDDRVLNR 355
                          D   M+  +   +FA  F+ D DP   +  D  L R
Sbjct: 335 CSGVHVRSVCVFGAGDLSWMLRQHH--LFANKFDMDVDPFAIQCLDEHLRR 383

PyMOL of 2gak

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		428
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	100.0
3bcv_A		240	Putative glycosyltransferase protein; protein stru	84.7

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*	Back alignment and structure

Probab=100.00  E-value=5.9e-64  Score=514.04  Aligned_cols=279  Identities=22%  Similarity=0.322  Sum_probs=239.7

Q ss_pred             CCCeEEEEEEeeCCCHHHHHHHHHHHcCCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceeeecCcc
Q 014248           62 YPPVLAYWICGTNGDSKKMLRLLKAIYHPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAIDKMGVS  141 (428)
Q Consensus        62 ~p~kiAYLIl~~h~d~~~l~RLL~aLy~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~wgg~S  141 (428)
                      .+|+|||+|++ |+|+++++||++++|||+|.||||+|+|++...+.++.+      +..+++||+|++++..|.|||+|
T Consensus        82 ~~~kiAflil~-h~d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~------~~~~f~NV~v~~~~~~v~WGg~S  154 (391)
T 2gak_A           82 VGFPIAYSIVV-HHKIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQG------IASCFDNVFVASQLESVVYASWT  154 (391)
T ss_dssp             HTSCEEEEEEE-CSCHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHH------HHHTCTTEEECSSCCCCCTTSHH
T ss_pred             cCCCEEEEEEe-cCCHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHH------HHhcCCCEEEeccCcccccCCch
Confidence            45889999999 899999999999999999999999999999887766643      35679999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCcEEEecCCCcccccChhHHHHHHccCCCCcceEeeecCCCcceee-eeeeEeeCCcccccc
Q 014248          142 ALAATLHAAALLLKISTNWDWFIPLSPLDYPLMSQDDVLHAFTFLPRDLNFIDFTTNTGWKERL-MINRIVIDPNLYYKK  220 (428)
Q Consensus       142 ~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt~ddi~~~f~~~~~~~nFI~~~~~~~wk~~~-R~~~~~~dp~ly~~~  220 (428)
                      ||+|+|+||+.||+...+|||||||||+||||+|+++|.++|..+ +|+|||++..+.+|++.+ +.++...|++++   
T Consensus       155 ~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~R~~~~~~~~~~~l~---  230 (391)
T 2gak_A          155 RVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEERWKKRYAVVDGKLT---  230 (391)
T ss_dssp             HHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSHHHHEEEEEETTEEE---
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCcccccceEeeeecccccee---
Confidence            999999999999998789999999999999999999999999765 789999999888886532 223334454332   


Q ss_pred             CccceeecccCCCCCCceeeecceeeeecHHHHHHhhhccCCchHHHHHhhcCCCCCCchhhhHHhhcC---------CC
Q 014248          221 ATPILYAVETRTNPDAFKIFGGSQWMILSRSFMEYCVQGWDNFPRKLLMYLTNVPYPLESYFHTIICNS---------PQ  291 (428)
Q Consensus       221 k~~i~~~~~kR~~P~~~~l~~GS~W~~LsR~fveyii~~~d~lpr~ll~yf~~t~~pdE~yFqTvl~Ns---------~~  291 (428)
                          ++..++|.+|.++++|+|||||+|||+||+||++  |++++++++||+++++|||+||||++.|.         ..
T Consensus       231 ----~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~~~~  304 (391)
T 2gak_A          231 ----NTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNK  304 (391)
T ss_dssp             ----EEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCSSGG
T ss_pred             ----eecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCccccccc
Confidence                2346778889999999999999999999999998  66688899999999999999999998764         23


Q ss_pred             CCCccccCceeEEecCCCCC------CCCc----------ccChhhHHHHHhCCCcceEEeccCC--CHHHHHHHHHHHh
Q 014248          292 FQNSTINTDLSFMKWESPAH------VGPR----------TLTLPDYVEMVTSNKTTIFARPFEE--DDPVLEKIDDRVL  353 (428)
Q Consensus       292 f~~t~vn~nLRyi~W~~~~~------~~P~----------~l~~~D~~~l~~S~~~alFARKF~~--d~~vLd~Id~~ll  353 (428)
                      |+++++++++|||+|+++.+      .||.          +|+.+|+++|.+|+  ++|||||++  |++||+|||+.|.
T Consensus       305 ~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~--~lFARKF~~~~d~~~l~~l~~~l~  382 (391)
T 2gak_A          305 YDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQH--HLFANKFDMDVDPFAIQCLDEHLR  382 (391)
T ss_dssp             GCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSC--CSEEECCCTTTCHHHHHHHHHHHH
T ss_pred             cccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCC--CceEEccCCccCHHHHHHHHHHHh
Confidence            45667899999999985322      2443          89999999999999  999999997  8999999999999


Q ss_pred             ccCCCC
Q 014248          354 NRSGNG  359 (428)
Q Consensus       354 ~r~~~~  359 (428)
                      +|+-.+
T Consensus       383 ~r~~~~  388 (391)
T 2gak_A          383 RKALEN  388 (391)
T ss_dssp             HHHHC-
T ss_pred             hhhhcc
Confidence            887543

PyMOL of 2gak

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		428
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	82.74

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=82.74  E-value=4.2  Score=34.66  Aligned_cols=115  Identities=8%  Similarity=0.035  Sum_probs=67.7

Q ss_pred             CeEEEEEEeeCCCHHHHHHHHHHHc---CCCCEEEEEEeCCCChhHHHHHHHHhhhhhhhhccCceEEeCccceee---e
Q 014248           64 PVLAYWICGTNGDSKKMLRLLKAIY---HPRNQYLLQLDAGAPESERAELALKVQSEIVFKAFGNVDVVGASYAID---K  137 (428)
Q Consensus        64 ~kiAYLIl~~h~d~~~l~RLL~aLy---~P~n~y~IHvD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~k~~~V~---w  137 (428)
                      |++..+|.+ ++..+.+++.|+.+-   .+ +.=+|=||-.|++...+.|+++.       .-.+|+++.......   -
T Consensus         1 P~vSiiip~-yN~~~~l~~~l~Si~~Qt~~-~~eiivvdd~S~d~t~~~l~~~~-------~~~~i~~~~~~~~~~~~~~   71 (255)
T d1qg8a_           1 PKVSVIMTS-YNKSDYVAKSISSILSQTFS-DFELFIMDDNSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERT   71 (255)
T ss_dssp             CCEEEEEEE-SSCTTTHHHHHHHHHTCSCC-CEEEEEEECSCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHH
T ss_pred             CEEEEEEec-CCCHHHHHHHHHHHHhCCCC-CeEEEEEECCCCccHHHHHHHhh-------hhccccccccccccccccc
Confidence            678999988 777888999999983   23 34456666667777665554322       235677765432210   1


Q ss_pred             cCccHHHHHHHHHHHHHhcCCCCcEEEecCCCcccccC-hhHHHHHHccCCCCcceE
Q 014248          138 MGVSALAATLHAAALLLKISTNWDWFIPLSPLDYPLMS-QDDVLHAFTFLPRDLNFI  193 (428)
Q Consensus       138 gg~S~V~AtL~~~~~lL~~~~~wdyfi~LSgsDyPLkt-~ddi~~~f~~~~~~~nFI  193 (428)
                      ...+.-.|-=.    +++.. .-||++.|-+.|++..+ .+.+...|.. +.+..++
T Consensus        72 ~~~g~~~a~N~----gi~~a-~g~~i~~lD~Dd~~~p~~l~~~~~~~~~-~~~~~~v  122 (255)
T d1qg8a_          72 EKTRYAALINQ----AIEMA-EGEYITYATDDNIYMPDRLLKMVRELDT-HPEKAVI  122 (255)
T ss_dssp             SSCHHHHHHHH----HHHHC-CCSEEEEEETTEEECTTHHHHHHHHHHH-CTTCCEE
T ss_pred             ccchhcccccc----ccccc-ccccccccccccccccchHHHHHHHHHh-CCCCCeE
Confidence            12222222222    33332 35899999999999765 3445555543 3334554

PyMOL of d1qg8a_