Citrus Sinensis ID: 014300

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
cHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHccccccccccccHHHHHccccccccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccHHHHHHHHHcccccccccccHcHccccccHHHHHcccccccccccHccccccccEEEEEEcccccccccccccccccEEEEcccccccEEHHHHHHHHHHHHHHHHcccccHccccEEEEEEcHHHHccccccHHHHHHHHHHHHHHHHHcccccccEEEEEHHHccHHHHHHHHHHccccHHHHHccHHHHHHcHccccccccHHHHcHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEccccccccEcccccccEcccccccHHHccEccccHHHHHHHHHccccccccccccEcccEHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
MGRALLSHFLIvsnssprlvsslkcrsrgglpskycktpglirqnrnlathngcgfrcycnvslseptapvassssvkkrivsgvqptgsihlGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHaitlpydtqqLSKATRETAAIYLACgidnskasVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEkshkaggenvGVALLTYPVLMASDILlyqsdfvpvgedqKQHLELTRELAERVNYLYGgrkwkklggrggaifkvpeplippagarvMSLTDGlskmsksapsdqsrinlldpkdvIANKIkrcktdssaglefdnlerpecnnLLSIYQLISGKTKGEVAEECqnmnwgtfkpLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
MGRALLSHFlivsnssprlvsslkcrsrgglpskycktpglIRQNRNLATHNGCGFRCYCNVSLSEPTapvassssvkKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYggrkwkklggrGGAIFkvpeplippaGARVMSLTDGLSKMSksapsdqsrinlldpkdviANKIKRCKtdssaglefdnlerpeCNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNylyggrkwkklggrggAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLadgaakaadiadaTLNNVYQAMGFLRR
*****LSHFLIVS******V**LKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSL****************IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIP*********************************DVIANKIKRCK****AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF***
******S*FLIVSNSSPRL*************************************************************IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQF***************LLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM******************RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLS**************RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD*************SRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
**********IVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLS***********VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query427 2.2.26 [Sep-21-2011]
Q8DHG3330 Tryptophan--tRNA ligase O yes no 0.765 0.990 0.610 1e-116
Q8YXE4335 Tryptophan--tRNA ligase O yes no 0.770 0.982 0.585 1e-114
Q7TV34337 Tryptophan--tRNA ligase O yes no 0.775 0.982 0.547 1e-106
P73655337 Tryptophan--tRNA ligase O N/A no 0.775 0.982 0.560 1e-104
Q7TTU9337 Tryptophan--tRNA ligase O yes no 0.777 0.985 0.54 1e-103
Q7VBM9339 Tryptophan--tRNA ligase O yes no 0.782 0.985 0.534 1e-102
Q7NCG8336 Tryptophan--tRNA ligase O yes no 0.775 0.985 0.521 1e-100
Q7V286338 Tryptophan--tRNA ligase O yes no 0.775 0.979 0.508 1e-98
Q92HR1330 Tryptophan--tRNA ligase O yes no 0.770 0.996 0.472 5e-85
Q9ZD76330 Tryptophan--tRNA ligase O yes no 0.770 0.996 0.464 1e-83
>sp|Q8DHG3|SYW_THEEB Tryptophan--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=trpS PE=3 SV=1 Back     alignment and function desciption
 Score =  417 bits (1073), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/344 (61%), Positives = 249/344 (72%), Gaps = 17/344 (4%)

Query: 81  IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 140
           ++SGVQPTGS+HLGNYLGAI+NW+A Q          YE  F +VDLHAIT+P+D  +L+
Sbjct: 1   MLSGVQPTGSLHLGNYLGAIRNWVAGQ--------AEYENYFCVVDLHAITVPHDPAELA 52

Query: 141 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 200
             T   AA+YLACGID + A++FVQSHV AH EL WLL+  TP+ WL  MIQFKEK+ K 
Sbjct: 53  ANTYTVAALYLACGIDPAHATIFVQSHVSAHAELTWLLNCITPLNWLEDMIQFKEKAVKQ 112

Query: 201 GGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 260
           G ENV   LL YPVLMA+DILLY +D VPVGEDQKQHLELTR++A RVNYL+   +    
Sbjct: 113 G-ENVAAGLLDYPVLMAADILLYDADLVPVGEDQKQHLELTRDIAARVNYLFARNQ---- 167

Query: 261 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 320
                 I K+PEPLIP AGARVMSLTDG  KMSKS PS+ SRINLLD  D I  KIKRCK
Sbjct: 168 ----PPILKLPEPLIPKAGARVMSLTDGTKKMSKSDPSELSRINLLDSPDEIRKKIKRCK 223

Query: 321 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH 380
           TD   GL FD+ +RPE NNLLS+YQ+++GKTK  VA EC +M WG FKPLLTDA+I  L 
Sbjct: 224 TDPIRGLAFDDPDRPEANNLLSLYQVLTGKTKEAVAAECADMGWGQFKPLLTDAVIATLE 283

Query: 381 PIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 424
           PIQ RY EIM+D +YL  +L  G  +AA +A+ATL  V  A GF
Sbjct: 284 PIQQRYNEIMADPSYLKDLLKKGQEQAATVANATLERVKLAFGF 327

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2
>sp|Q8YXE4|SYW_NOSS1 Tryptophan--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7TV34|SYW_PROMM Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain MIT 9313) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|P73655|SYW_SYNY3 Tryptophan--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=trpS PE=3 SV=2 Back     alignment and function description
>sp|Q7TTU9|SYW_SYNPX Tryptophan--tRNA ligase OS=Synechococcus sp. (strain WH8102) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7VBM9|SYW_PROMA Tryptophan--tRNA ligase OS=Prochlorococcus marinus (strain SARG / CCMP1375 / SS120) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7NCG8|SYW_GLOVI Tryptophan--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q7V286|SYW_PROMP Tryptophan--tRNA ligase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q92HR1|SYW_RICCN Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=trpS PE=3 SV=1 Back     alignment and function description
>sp|Q9ZD76|SYW_RICPR Tryptophan--tRNA ligase OS=Rickettsia prowazekii (strain Madrid E) GN=trpS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query427
225429361416 PREDICTED: tryptophanyl-tRNA synthetase 0.974 1.0 0.805 0.0
255550960412 tryptophanyl-tRNA synthetase, putative [ 0.964 1.0 0.829 0.0
449436894414 PREDICTED: tryptophan--tRNA ligase-like 0.967 0.997 0.787 0.0
224075399403 predicted protein [Populus trichocarpa] 0.932 0.987 0.797 0.0
356518366393 PREDICTED: tryptophanyl-tRNA synthetase- 0.850 0.923 0.838 0.0
356510049398 PREDICTED: tryptophanyl-tRNA synthetase- 0.803 0.861 0.883 0.0
57899972399 putative tryptophanyl-tRNA synthetase [O 0.934 1.0 0.742 1e-175
357136379399 PREDICTED: tryptophanyl-tRNA synthetase- 0.934 1.0 0.740 1e-174
242058649405 hypothetical protein SORBIDRAFT_03g03427 0.948 1.0 0.728 1e-173
357136377408 PREDICTED: tryptophanyl-tRNA synthetase- 0.946 0.990 0.737 1e-173
>gi|225429361|ref|XP_002273029.1| PREDICTED: tryptophanyl-tRNA synthetase [Vitis vinifera] gi|296081565|emb|CBI20570.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/427 (80%), Positives = 371/427 (86%), Gaps = 11/427 (2%)

Query: 1   MGRALLSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYC 60
           MGR++LSHFL +SN SPR  SSL   S G +PSK  K  G I Q+  L      GFRC C
Sbjct: 1   MGRSVLSHFLNLSNPSPRFTSSL---SSGAIPSKLLKKSGSIDQHCLLNRQIRTGFRCCC 57

Query: 61  NVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYET 120
           ++S+S+P    +SSS ++KRIVSGVQPTG+IHLGNYLGAIKNWI LQ        N+Y+T
Sbjct: 58  SISVSQPAGQESSSSPLRKRIVSGVQPTGTIHLGNYLGAIKNWIPLQ--------NTYDT 109

Query: 121 LFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSS 180
            FFIVDLHAITLPY+TQQL KATR+TAAIYLACG+D SKASVFVQSHVRAH ELMWLLSS
Sbjct: 110 FFFIVDLHAITLPYETQQLFKATRDTAAIYLACGVDTSKASVFVQSHVRAHSELMWLLSS 169

Query: 181 ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 240
           ATPIGWLNKMIQFKEKS K G ENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL
Sbjct: 170 ATPIGWLNKMIQFKEKSRKVGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 229

Query: 241 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 300
           TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPP GARVMSLTDG SKMSKSA SDQ
Sbjct: 230 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPEGARVMSLTDGCSKMSKSASSDQ 289

Query: 301 SRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 360
           SRINLLDPKDVIANKIKRCKTDS  GLEFDN ERPECNNLL+IYQL+SG+TK EVA+ECQ
Sbjct: 290 SRINLLDPKDVIANKIKRCKTDSFPGLEFDNPERPECNNLLTIYQLMSGRTKEEVAQECQ 349

Query: 361 NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQ 420
            MNWG FK +LTDALI+HLHPIQVRYEEIMSDSAYLD++LA+GA KAADIADATLNNVYQ
Sbjct: 350 GMNWGVFKRILTDALIDHLHPIQVRYEEIMSDSAYLDRLLAEGATKAADIADATLNNVYQ 409

Query: 421 AMGFLRR 427
           AMGFLRR
Sbjct: 410 AMGFLRR 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550960|ref|XP_002516528.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] gi|223544348|gb|EEF45869.1| tryptophanyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449436894|ref|XP_004136227.1| PREDICTED: tryptophan--tRNA ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224075399|ref|XP_002304617.1| predicted protein [Populus trichocarpa] gi|222842049|gb|EEE79596.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518366|ref|XP_003527850.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|356510049|ref|XP_003523753.1| PREDICTED: tryptophanyl-tRNA synthetase-like [Glycine max] Back     alignment and taxonomy information
>gi|57899972|dbj|BAD87908.1| putative tryptophanyl-tRNA synthetase [Oryza sativa Japonica Group] gi|125527667|gb|EAY75781.1| hypothetical protein OsI_03697 [Oryza sativa Indica Group] gi|125571983|gb|EAZ13498.1| hypothetical protein OsJ_03415 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357136379|ref|XP_003569782.1| PREDICTED: tryptophanyl-tRNA synthetase-like isoform 2 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|242058649|ref|XP_002458470.1| hypothetical protein SORBIDRAFT_03g034270 [Sorghum bicolor] gi|241930445|gb|EES03590.1| hypothetical protein SORBIDRAFT_03g034270 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357136377|ref|XP_003569781.1| PREDICTED: tryptophanyl-tRNA synthetase-like isoform 1 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query427
TAIR|locus:2043570412 OVA4 "ovule abortion 4" [Arabi 0.946 0.980 0.636 2e-134
UNIPROTKB|P00954334 trpS "tryptophanyl-tRNA synthe 0.768 0.982 0.422 1.5e-65
TIGR_CMR|SO_0294332 SO_0294 "tryptophanyl-tRNA syn 0.763 0.981 0.418 3.2e-65
TIGR_CMR|APH_0035331 APH_0035 "tryptophanyl-tRNA sy 0.756 0.975 0.433 6.7e-65
TIGR_CMR|ECH_0167333 ECH_0167 "tryptophanyl-tRNA sy 0.700 0.897 0.436 2.3e-64
TIGR_CMR|CPS_0480335 CPS_0480 "tryptophanyl-tRNA sy 0.768 0.979 0.410 6e-64
TIGR_CMR|SPO_0392338 SPO_0392 "tryptophanyl-tRNA sy 0.765 0.967 0.399 9.7e-64
UNIPROTKB|P67590336 trpS "Tryptophan--tRNA ligase" 0.779 0.991 0.403 2.3e-62
TIGR_CMR|BA_1188329 BA_1188 "tryptophanyl-tRNA syn 0.723 0.939 0.431 3.4e-61
UNIPROTKB|Q9KNV7338 trpS "Tryptophan--tRNA ligase" 0.775 0.979 0.401 5.5e-61
TAIR|locus:2043570 OVA4 "ovule abortion 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
 Identities = 275/432 (63%), Positives = 320/432 (74%)

Query:     1 MGRAL-LSHFLIVSNSSPRLVSSLKCRSRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCY 59
             MG A  LSHFLI+S+S  R        SR G  ++    P  +  + +  +  G GFRC 
Sbjct:     1 MGHATSLSHFLILSSS--RF-------SRLGSLTRLLSKPTSLSGSFSSISVTGQGFRCC 51

Query:    60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYE 119
             C+V+ ++ T+P     SVKKR+VSGVQPTGS+HLGNYLGAIKNW+ALQ        ++YE
Sbjct:    52 CSVA-TDDTSP-----SVKKRVVSGVQPTGSVHLGNYLGAIKNWVALQ--------DTYE 97

Query:   120 TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLS 179
             TLF IVD HAITLPYDT+QL KAT +TAA+YLACGID SKASVFVQSHV AHVELMWLL 
Sbjct:    98 TLFIIVDHHAITLPYDTRQLGKATTDTAALYLACGIDVSKASVFVQSHVPAHVELMWLLC 157

Query:   180 SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 239
             S+TPIGWL KMIQFKEKS K G EN  V L TYP LM +DILLYQSDFVPVGEDQKQH+E
Sbjct:   158 SSTPIGWLQKMIQFKEKSRKEGVENASVGLFTYPDLMTADILLYQSDFVPVGEDQKQHIE 217

Query:   240 LTRELAERVNXXXXXXX----XXXXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 295
             L RE+A+RVN                    ++FK+PEPLIP AGARVMSLTDGLSKMSKS
Sbjct:   218 LAREIAQRVNHLYGGKKWKKLGGYEIFRGGSLFKIPEPLIPQAGARVMSLTDGLSKMSKS 277

Query:   296 APSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEV 355
             APSDQSRINLLD KD+I +KIKRCKTDS AGLEFDN ERPECNNLLSIYQ++SGK K EV
Sbjct:   278 APSDQSRINLLDSKDLIVDKIKRCKTDSFAGLEFDNAERPECNNLLSIYQIVSGKKKEEV 337

Query:   356 AEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTL 415
              EEC++M+WGTFKPLL DALIEHL PIQ RY+EI+++  YLDK+L             T+
Sbjct:   338 MEECKDMSWGTFKPLLADALIEHLSPIQARYQEIIAEPEYLDKILSEGADRAEELGAVTM 397

Query:   416 NNVYQAMGFLRR 427
              N+YQAMG+ +R
Sbjct:   398 RNMYQAMGYYQR 409
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA;ISS
GO:0004830 "tryptophan-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA;ISS
GO:0006436 "tryptophanyl-tRNA aminoacylation" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0048481 "ovule development" evidence=RCA;IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
UNIPROTKB|P00954 trpS "tryptophanyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0294 SO_0294 "tryptophanyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0035 APH_0035 "tryptophanyl-tRNA synthetase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0167 ECH_0167 "tryptophanyl-tRNA synthetase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0480 CPS_0480 "tryptophanyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0392 SPO_0392 "tryptophanyl-tRNA synthetase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P67590 trpS "Tryptophan--tRNA ligase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1188 BA_1188 "tryptophanyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNV7 trpS "Tryptophan--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7VBM9SYW_PROMA6, ., 1, ., 1, ., 20.53400.78220.9852yesno
Q7TV34SYW_PROMM6, ., 1, ., 1, ., 20.54720.77510.9821yesno
P67586SYW_BRUME6, ., 1, ., 1, ., 20.44350.80090.9633yesno
Q7TTU9SYW_SYNPX6, ., 1, ., 1, ., 20.540.77750.9851yesno
Q7V286SYW_PROMP6, ., 1, ., 1, ., 20.50850.77510.9792yesno
Q98C31SYW_RHILO6, ., 1, ., 1, ., 20.44470.80320.9661yesno
Q8DHG3SYW_THEEB6, ., 1, ., 1, ., 20.61040.76580.9909yesno
Q7NCG8SYW_GLOVI6, ., 1, ., 1, ., 20.52120.77510.9851yesno
Q8YXE4SYW_NOSS16, ., 1, ., 1, ., 20.58500.77040.9820yesno
P67587SYW_BRUSU6, ., 1, ., 1, ., 20.44350.80090.9633yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.20.914
3rd Layer6.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
PLN02886389 PLN02886, PLN02886, aminoacyl-tRNA ligase 0.0
PRK00927333 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; 0.0
COG0180314 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Trans 1e-137
TIGR00233327 TIGR00233, trpS, tryptophanyl-tRNA synthetase 1e-117
cd00806280 cd00806, TrpRS_core, catalytic core domain of tryp 1e-117
pfam00579291 pfam00579, tRNA-synt_1b, tRNA synthetases class I 5e-85
PRK12282333 PRK12282, PRK12282, tryptophanyl-tRNA synthetase I 1e-82
PRK12283398 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; 2e-73
PRK12556332 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; 5e-71
PRK12284431 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; 4e-54
cd00395273 cd00395, Tyr_Trp_RS_core, catalytic core domain of 1e-32
PRK12285368 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; 1e-14
PRK08560329 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Valid 1e-07
cd00802143 cd00802, class_I_aaRS_core, catalytic core domain 2e-06
TIGR00234377 TIGR00234, tyrS, tyrosyl-tRNA synthetase 3e-06
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase Back     alignment and domain information 
 Score =  737 bits (1904), Expect = 0.0
 Identities = 293/401 (73%), Positives = 322/401 (80%), Gaps = 14/401 (3%)

Query: 27  SRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQ 86
           S  G   +    PG +  +   A+   C   C    + + P        + KKR+VSGVQ
Sbjct: 1   SSLGSLGRLLSKPGPLSGS---ASSASC---CSAATAATAPEKEAPPKVARKKRVVSGVQ 54

Query: 87  PTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRET 146
           PTGSIHLGNYLGAIKNW+ALQ         +Y+T F +VDLHAITLP+D ++L KATR T
Sbjct: 55  PTGSIHLGNYLGAIKNWVALQ--------ETYDTFFCVVDLHAITLPHDPRELGKATRST 106

Query: 147 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 206
           AAIYLACGID SKASVFVQSHV AH ELMWLLS +TPIGWLNKMIQFKEKS KAG ENVG
Sbjct: 107 AAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVG 166

Query: 207 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 266
           V LLTYPVLMASDILLYQ+D VPVGEDQKQHLELTR++AERVN LYGGRKWKKLGGRGG+
Sbjct: 167 VGLLTYPVLMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGS 226

Query: 267 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 326
           +FKVPE LIPPAGARVMSLTDG SKMSKSAPSDQSRINLLDP DVIANKIKRCKTDS  G
Sbjct: 227 VFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDSFPG 286

Query: 327 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 386
           LEFDN ERPECNNLLSIYQL++GKTK EV  EC +M WG FKPLLTDALIEHL PIQVRY
Sbjct: 287 LEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQVRY 346

Query: 387 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 427
           EEIMSD +YLD VL +GA  AA+IAD TL NVYQAMGF++R
Sbjct: 347 EEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAMGFVQR 387

Length = 389
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y) Back     alignment and domain information
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 427
PLN02886389 aminoacyl-tRNA ligase 100.0
KOG2713347 consensus Mitochondrial tryptophanyl-tRNA syntheta 100.0
PRK12284431 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 100.0
PRK00927333 tryptophanyl-tRNA synthetase; Reviewed 100.0
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 100.0
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 100.0
PRK12282333 tryptophanyl-tRNA synthetase II; Reviewed 100.0
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 100.0
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 100.0
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 100.0
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 100.0
PRK08560329 tyrosyl-tRNA synthetase; Validated 100.0
PTZ00348 682 tyrosyl-tRNA synthetase; Provisional 100.0
PLN02486383 aminoacyl-tRNA ligase 100.0
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 100.0
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 100.0
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 100.0
PRK05912408 tyrosyl-tRNA synthetase; Validated 100.0
KOG2144360 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Tr 100.0
PRK13354410 tyrosyl-tRNA synthetase; Provisional 100.0
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 100.0
KOG2145397 consensus Cytoplasmic tryptophanyl-tRNA synthetase 100.0
PTZ00348682 tyrosyl-tRNA synthetase; Provisional 100.0
COG0162401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 100.0
KOG2623467 consensus Tyrosyl-tRNA synthetase [Translation, ri 99.65
cd00808239 GluRS_core catalytic core domain of discriminating 99.59
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.44
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 98.77
cd00674353 LysRS_core_class_I catalytic core domain of class 98.52
PRK00750510 lysK lysyl-tRNA synthetase; Reviewed 98.5
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 98.16
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 98.15
TIGR00464470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 98.12
cd02156105 nt_trans nucleotidyl transferase superfamily. nt_t 98.1
PRK01406476 gltX glutamyl-tRNA synthetase; Reviewed 98.08
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 97.89
cd09287240 GluRS_non_core catalytic core domain of non-discri 97.66
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 97.63
PLN02627 535 glutamyl-tRNA synthetase 97.63
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 97.59
COG0008472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 97.56
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 97.55
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 97.44
PLN03233 523 putative glutamate-tRNA ligase; Provisional 97.41
PRK00260463 cysS cysteinyl-tRNA synthetase; Validated 97.41
PRK12410433 glutamylglutaminyl-tRNA synthetase; Provisional 97.39
PRK12558 445 glutamyl-tRNA synthetase; Provisional 97.38
PRK01611507 argS arginyl-tRNA synthetase; Reviewed 97.28
PRK04156567 gltX glutamyl-tRNA synthetase; Provisional 97.28
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 97.23
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 97.22
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 97.12
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 97.11
PLN02859 788 glutamine-tRNA ligase 97.01
PLN02907 722 glutamate-tRNA ligase 96.61
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 96.59
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 96.33
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 95.73
PTZ00437 574 glutaminyl-tRNA synthetase; Provisional 95.47
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 95.22
TIGR00435465 cysS cysteinyl-tRNA synthetase. This model finds t 95.2
TIGR00463 560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 95.19
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 94.72
PLN02946 557 cysteine-tRNA ligase 93.58
TIGR00234377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 90.13
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 89.51
PRK12268 556 methionyl-tRNA synthetase; Reviewed 86.84
PF09334391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 86.67
PLN02224 616 methionine-tRNA ligase 85.51
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 83.31
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 82.66
KOG1147 712 consensus Glutamyl-tRNA synthetase [Translation, r 81.3
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 81.18
>PLN02886 aminoacyl-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-103  Score=800.82  Aligned_cols=362  Identities=79%  Similarity=1.220  Sum_probs=337.2

Q ss_pred             ceeeeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCH
Q 014300           57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT  136 (427)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~  136 (427)
                      +|+++.++..+..+.+.+.-.+.+|||||||||.+|||||+|+|++|+++        |++++++||||||||+|+++++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~l--------Q~~~~~~~~IADlHAlt~~~~~   96 (389)
T PLN02886         25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVAL--------QETYDTFFCVVDLHAITLPHDP   96 (389)
T ss_pred             hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHH--------hccCCEEEEEecHHHhhCCCCH
Confidence            44444444555555555555567899999999999999999999999999        8999999999999999998899


Q ss_pred             HHHHHHHHHHHHHHHHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHH
Q 014300          137 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLM  216 (427)
Q Consensus       137 ~~l~~~~~~~~a~~lA~GiDp~k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQ  216 (427)
                      +++++++++++++|+||||||+|++||+||++++|+||+|+|+|.+++++|+||+|||++.+..+.+++++|+|+||+||
T Consensus        97 ~~lr~~~~~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLq  176 (389)
T PLN02886         97 RELGKATRSTAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLM  176 (389)
T ss_pred             HHHHHHHHHHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999987765467899999999999


Q ss_pred             HhhhhccccceEecccchHHHHHHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014300          217 ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA  296 (427)
Q Consensus       217 AADIll~~adlvpvG~DQ~qh~eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~  296 (427)
                      |||||+|++|+||||+||+||+|||||||+|||+.||...++++|.+.+.+|++|++++++.+++||||+||++|||||+
T Consensus       177 AADILl~~a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~  256 (389)
T PLN02886        177 ASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSA  256 (389)
T ss_pred             HhhhhhcCCCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCC
Confidence            99999999999999999999999999999999999986656666666667899999999876689999998888999999


Q ss_pred             CCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHH
Q 014300          297 PSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALI  376 (427)
Q Consensus       297 p~~~s~I~L~Dspe~I~kKI~kA~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~  376 (427)
                      |+++|+|+|+|+||+|++|||+|+||+.+++++++|++|+++|++.||..+++.+++|++++|+++++++||+.|++.|+
T Consensus       257 p~~~s~I~L~Ds~e~I~kKI~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~  336 (389)
T PLN02886        257 PSDQSRINLLDPPDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALI  336 (389)
T ss_pred             CCCCCeEEecCCHHHHHHHHhcCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            98789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014300          377 EHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR  426 (427)
Q Consensus       377 ~~L~pirer~~~~~~d~~~l~~IL~~GaekAr~iA~~tl~~Vr~a~G~~~  426 (427)
                      ++|+|||+||+++++|++||++||++|++|||++|++||++||++|||.+
T Consensus       337 ~~L~Pirer~~~l~~d~~~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~~  386 (389)
T PLN02886        337 EHLSPIQVRYEEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAMGFVQ  386 (389)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999963

>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00348 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>cd02156 nt_trans nucleotidyl transferase superfamily Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
1i6m_A328 1.7 High Resolution Experimental Phases For Tryptop 8e-75
3prh_A388 Tryptophanyl-Trna Synthetase Val144pro Mutant From 2e-73
3n9i_A346 Crystal Structure Of Tryptophanyl-Trna Synthetase F 8e-72
1d2r_A326 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl 6e-71
1i6k_A328 1.7 High Resolution Experimental Phases For Tryptop 7e-70
3fi0_A326 Crystal Structure Analysis Of B. Stearothermophilus 5e-69
3sz3_A341 Crystal Structure Of Tryptophanyl-Trna Synthetase F 4e-67
3fhj_A300 Independent Saturation Of Three Trprs Subsites Gene 1e-59
3fhj_F297 Independent Saturation Of Three Trprs Subsites Gene 2e-58
3fhj_E293 Independent Saturation Of Three Trprs Subsites Gene 3e-58
3fhj_D287 Independent Saturation Of Three Trprs Subsites Gene 1e-57
3u1v_A338 X-Ray Structure Of De Novo Design Cysteine Esterase 2e-56
2el7_A337 Crystal Structure Of Tryptophanyl-Trna Synthetase F 2e-55
3fhj_B292 Independent Saturation Of Three Trprs Subsites Gene 3e-55
3fhj_C280 Independent Saturation Of Three Trprs Subsites Gene 6e-54
2yy5_A348 Crystal Structure Of Tryptophanyl-Trna Synthetase F 9e-48
2g36_A340 Crystal Structure Of Tryptophanyl-Trna Synthetase ( 2e-39
3m5w_A322 Crystal Structure Of Tryptophanyl-Trna Synthetase F 3e-38
2a4m_A331 Structure Of Trprs Ii Bound To Atp Length = 331 3e-21
1yi8_B351 Crystal Structure Of Tryptophanyl Trrna Synthetase 3e-20
3a04_A372 Crystal Structure Of Tryptophanyl-Trna Synthetase F 4e-07
2cyb_A323 Crystal Structure Of Tyrosyl-Trna Synthetase Comple 2e-06
1j1u_A306 Crystal Structure Of Archaeal Tyrosyl-Trna Syntheta 4e-04
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328 Back     alignment and structure 
Iteration: 1

 Score =  277 bits (709), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 154/349 (44%), Positives = 202/349 (57%), Gaps = 23/349 (6%)
Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
           K I SG+QP+G I +GNY+GA++ ++ LQ        + Y   F IVD HAIT+  D  +
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53
Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
           L +  R  AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS 
Sbjct: 54  LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS- 112
Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNXXXXXXXXX 258
            AG E V   LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N         
Sbjct: 113 -AGKEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYGE---- 167
Query: 259 XXXXXXXAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
                   +F +PE  IP  GAR+MSL D   KMSKS P+ ++ I LLD    I  KIK 
Sbjct: 168 --------LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 219
Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
             TDS   + +D   +P  +NLL+IY  +SG++  E+  + +   +G FK  L   +IE 
Sbjct: 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 279
Query: 379 LHPIQVRYEEIMSDSAYLDKVLXXXXXXXXXXXXXTLNNVYQAMGFLRR 427
           L PIQ RY   M +S  LD+VL              +  + QAMG  RR
Sbjct: 280 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>pdb|3PRH|A Chain A, Tryptophanyl-Trna Synthetase Val144pro Mutant From B. Subtilis Length = 388 Back     alignment and structure
>pdb|3N9I|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Yersinia Pestis Co92 Length = 346 Back     alignment and structure
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna Synthetase: Domain Movements Fragment The Adenine Nucleotide Binding Site. Length = 326 Back     alignment and structure
>pdb|1I6K|A Chain A, 1.7 High Resolution Experimental Phases For Tryptophanyl-Trna Synthetase Complexed With Tryptophanyl-5'amp Length = 328 Back     alignment and structure
>pdb|3FI0|A Chain A, Crystal Structure Analysis Of B. Stearothermophilus Tryptophanyl-Trna Synthetase Complexed With Tryptophan, Amp, And Inorganic Phosphate Length = 326 Back     alignment and structure
>pdb|3SZ3|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Vibrio Cholerae With An Endogenous Tryptophan Length = 341 Back     alignment and structure
>pdb|3U1V|A Chain A, X-Ray Structure Of De Novo Design Cysteine Esterase Fr29, Northeast Structural Genomics Consortium Target Or52 Length = 338 Back     alignment and structure
>pdb|2EL7|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Thermus Thermophilus Length = 337 Back     alignment and structure
>pdb|2YY5|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Mycoplasma Pneumoniae Length = 348 Back     alignment and structure
>pdb|2G36|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (Tm0492) From Thermotoga Maritima At 2.50 A Resolution Length = 340 Back     alignment and structure
>pdb|3M5W|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Campylobacter Jejuni Length = 322 Back     alignment and structure
>pdb|2A4M|A Chain A, Structure Of Trprs Ii Bound To Atp Length = 331 Back     alignment and structure
>pdb|1YI8|B Chain B, Crystal Structure Of Tryptophanyl Trrna Synthetase Ii From Deinococcus Radiodurans In Complex With L-Trp Length = 351 Back     alignment and structure
>pdb|3A04|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase From Hyperthermophilic Archaeon, Aeropyrum Pernix K1 Length = 372 Back     alignment and structure
>pdb|2CYB|A Chain A, Crystal Structure Of Tyrosyl-Trna Synthetase Complexed With L-Tyrosine From Archaeoglobus Fulgidus Length = 323 Back     alignment and structure
>pdb|1J1U|A Chain A, Crystal Structure Of Archaeal Tyrosyl-Trna Synthetase Complexed With Trna(Tyr) And L-Tyrosine Length = 306 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query427
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 0.0
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 0.0
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 0.0
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 0.0
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 0.0
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 0.0
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 1e-180
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 1e-162
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 1e-155
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 2e-97
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 1e-93
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 4e-63
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 1e-91
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 2e-89
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 3e-80
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 3e-56
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 8e-52
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 2e-50
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 2e-49
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 7e-46
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 7e-43
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 7e-40
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 1e-24
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 1e-18
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 3e-14
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 7e-14
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 2e-13
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 5e-13
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} Length = 346 Back     alignment and structure
 Score =  565 bits (1458), Expect = 0.0
 Identities = 158/366 (43%), Positives = 217/366 (59%), Gaps = 23/366 (6%)

Query: 64  LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFF 123
           +SEP      + S K  + SG QP+G + +GNY+GA++ W+ +Q        + Y+ ++ 
Sbjct: 1   MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQ--------DDYDCIYC 52

Query: 124 IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATP 183
           IVDLHAIT   D   L K T +T A+YLACGID  K+++FVQSHV  H +L W L+  T 
Sbjct: 53  IVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTY 112

Query: 184 IGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 243
            G L++M QFK+KS +   EN+   L  YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R+
Sbjct: 113 FGELSRMTQFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRD 171

Query: 244 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 303
           +A R N LYG             IFK+PEP IP AGARVMSL D   KMSKS  +  + I
Sbjct: 172 IASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVI 219

Query: 304 NLLDPKDVIANKIKRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN 361
            LL+    +  KIKR  TDS     + +D  ++   +NLL I   ++G++  E+  +   
Sbjct: 220 ELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTG 279

Query: 362 MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQA 421
             +G  K  + DA+   L  +Q RY     D A L  V+ +GAAKA   A  TL  VY+A
Sbjct: 280 QMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEA 339

Query: 422 MGFLRR 427
           +GF+ +
Sbjct: 340 IGFVAQ 345
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Length = 341 Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Length = 328 Back     alignment and structure
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Length = 388 Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Length = 348 Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} PDB: 3m5w_A* Length = 322 Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Length = 337 Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Length = 351 Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Length = 340 Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Length = 375 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Length = 690 Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Length = 373 Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Length = 348 Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Length = 392 Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Length = 437 Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} Length = 395 Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} Length = 393 Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Length = 432 Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Length = 477 Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Length = 386 Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Length = 406 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Length = 451 Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Length = 394 Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Length = 314 Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Length = 323 Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Length = 372 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query427
3prh_A388 Tryptophanyl-tRNA synthetase; TRPRS, protein biosy 100.0
3n9i_A346 Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga 100.0
3sz3_A341 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 100.0
2yy5_A348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 100.0
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 100.0
1yi8_B351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 100.0
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 100.0
3jxe_A392 Tryptophanyl-tRNA synthetase; adenosine triphospha 100.0
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 100.0
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 100.0
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 100.0
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 100.0
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 100.0
2ip1_A432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 100.0
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 100.0
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 100.0
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 100.0
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 100.0
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 100.0
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
2dlc_X394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 100.0
1n3l_A372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 100.0
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 100.0
1h3f_A432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 100.0
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 100.0
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
2jan_A432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 100.0
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 100.0
2ts1_A419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 100.0
1jil_A420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 100.0
3p0j_A690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 99.09
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 99.07
1j09_A468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 98.89
3afh_A488 Glutamyl-tRNA synthetase 2; protein-substrate comp 98.89
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 98.68
3al0_C592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 98.67
2o5r_A481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 98.13
4g6z_A 490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 97.9
3aii_A553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 97.68
4gri_A 512 Glutamate--tRNA ligase; structural genomics, seatt 97.11
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 97.08
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 97.06
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 96.94
1iq0_A 592 Arginyl-tRNA synthetase; riken structural genomics 96.18
1li5_A461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 95.5
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 94.45
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 94.07
2zue_A 629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 94.02
3tqo_A462 Cysteinyl-tRNA synthetase; protein synthesis, liga 93.8
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 93.49
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 89.51
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 88.35
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 85.07
3kfl_A564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 82.66
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 82.33
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 82.31
1wkb_A810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 81.28
3u1f_A542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 80.19
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis} Back     alignment and structure
Probab=100.00  E-value=3.7e-96  Score=748.63  Aligned_cols=325  Identities=47%  Similarity=0.761  Sum_probs=305.3

Q ss_pred             ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS  158 (427)
Q Consensus        79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~  158 (427)
                      .+|||||+|||.+|||||+|+|++|++|        |++++|+|+||||||+|++.+++++++++++++++|+||||||+
T Consensus        36 ~ri~sG~~PTG~lHLGhyvGal~~~~~L--------Q~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~  107 (388)
T 3prh_A           36 QTIFSGIQPSGSVTLGNYIGAMKQFVEL--------QHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPE  107 (388)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHT--------TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             CeEEEeeCCCCcchHHHHHHHHHHHHHH--------HccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence            4699999999999999999999999999        99999999999999999989999999999999999999999999


Q ss_pred             ceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHHH
Q 014300          159 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL  238 (427)
Q Consensus       159 k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh~  238 (427)
                      |++||+||+|++|+||+|+|+|.++++||+|+++||++.+..  +++++|+|+||+|||||||+|++|+||||.||+||+
T Consensus       108 kt~if~qS~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hl  185 (388)
T 3prh_A          108 KATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHL  185 (388)
T ss_dssp             TEEEEEGGGSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHH
T ss_pred             HeEEEecccccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHH
Confidence            999999999999999999999999999999999999876553  678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh
Q 014300          239 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR  318 (427)
Q Consensus       239 eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~k  318 (427)
                      |||||||+|||+.||            .+|.+|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+
T Consensus       186 eltRdia~rfn~~y~------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~k  253 (388)
T 3prh_A          186 ELTRNLAERFNKKYN------------DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKS  253 (388)
T ss_dssp             HHHHHHHHHHHHHTC------------SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHT
T ss_pred             HHHHHHHHHhCcccC------------CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhh
Confidence            999999999999998            56999999998766899999888899999999888999999999999999999


Q ss_pred             ccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHH
Q 014300          319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDK  398 (427)
Q Consensus       319 A~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~  398 (427)
                      |+||+.+.++++++++|+++|+|.||+++++++++|++++|.+.+|++||+.|+++|+++|+|||+||+++++|+ +|++
T Consensus       254 a~TD~~~~~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~~-~l~~  332 (388)
T 3prh_A          254 AVTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIESE-ELDR  332 (388)
T ss_dssp             CCCCSSCCCCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH-HHHH
T ss_pred             ccCCCCCcccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-HHHH
Confidence            999999889999999999999999999999999999999998779999999999999999999999999999999 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014300          399 VLADGAAKAADIADATLNNVYQAMGFLR  426 (427)
Q Consensus       399 IL~~GaekAr~iA~~tl~~Vr~a~G~~~  426 (427)
                      ||++|++|||++|++||++||++|||.+
T Consensus       333 il~~Ga~kA~~~A~~tl~~v~~~~g~~~  360 (388)
T 3prh_A          333 ILDEGAERANRTANKMLKKMENAMGLGR  360 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            9999999999999999999999999964
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1 Back     alignment and structure
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 427
d1i6la_326 c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) 1e-97
d1r6ta2386 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase ( 6e-55
d1n3la_339 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Hum 8e-49
d1j1ua_306 c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Arc 3e-28
d1h3fa1343 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) 2e-16
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Length = 326 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  293 bits (750), Expect = 1e-97
 Identities = 156/348 (44%), Positives = 206/348 (59%), Gaps = 23/348 (6%)

Query: 79  KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 138
           K I SG+QP+G I +GNY+GA++ ++ LQ        + Y   F IVD HAIT+  D  +
Sbjct: 2   KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53

Query: 139 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 198
           L +  R  AA+YLA GID ++A++F+QS V AH +  W+L     IG L +M QFKEKS 
Sbjct: 54  LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSA 113

Query: 199 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 258
                + G  LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N         
Sbjct: 114 GKEAVSAG--LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK-------- 163

Query: 259 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 318
               R G +F +PE  IP  GAR+MSL D   KMSKS P+ ++ I LLD    I  KIK 
Sbjct: 164 ----RYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 219

Query: 319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 378
             TDS   + +D   +P  +NLL+IY  +SG++  E+  + +   +G FK  L   +IE 
Sbjct: 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 279

Query: 379 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 426
           L PIQ RY   M     LD+VL +GA KA  +A   +  + QAMG  R
Sbjct: 280 LRPIQERYHHWMES-EELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Length = 339 Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 306 Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Length = 343 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query427
d1i6la_326 Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste 100.0
d1r6ta2386 Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo 100.0
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 100.0
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 100.0
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 100.0
d1jila_323 Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au 99.97
d2ts1a_319 Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth 99.96
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 98.08
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 98.05
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 96.86
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 92.51
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 91.97
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 91.5
d1ffya3450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 86.92
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 85.21
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 84.22
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 82.54
d1ivsa4425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 80.65
d1rqga2361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 80.34
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Tryptophanyl-tRNA synthetase (TrpRS)
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=5.8e-92  Score=702.28  Aligned_cols=325  Identities=48%  Similarity=0.771  Sum_probs=311.3

Q ss_pred             ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccccceEEEEEeccceeccCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014300           79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS  158 (427)
Q Consensus        79 ~~i~sGi~PTG~lHLGnylgaik~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~l~~~~~~~~a~~lA~GiDp~  158 (427)
                      .|||||+||||.+|||||+|+|++|+++        |++++++|+||||||+|+..+++++++++++++++|+|||+||+
T Consensus         2 ~~v~tG~~PSG~~HlG~~~g~i~~~~~l--------q~~~~~~i~iAD~halt~~~~~~~l~~~~~~~~~~~lA~G~dp~   73 (326)
T d1i6la_           2 KTIFSGIQPSGVITIGNYIGALRQFVEL--------QHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPT   73 (326)
T ss_dssp             CEEEEEECCCSCCBHHHHHHTHHHHHHH--------TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred             CeeEeCcCCCCccHHHHHHHHHHHHHHH--------hCCCCEEEEeehHHhhccCCCHHHHHHHHHHHHHHhhhhhcccc
Confidence            5899999999999999999999999999        99999999999999999988999999999999999999999999


Q ss_pred             ceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCcccccchhhHHHHhhhhccccceEecccchHHHH
Q 014300          159 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL  238 (427)
Q Consensus       159 k~~if~QS~v~~~~eL~w~L~~~t~i~~l~R~~~~k~~~~~~~~~~~~~g~l~YPvLQAADIll~~adlvpvG~DQ~qh~  238 (427)
                      +++||+||++++|.+++|+++|.+++++++|+.+||++.+..  ++.++|+|+||+|||||||+|++|+||||+||+||+
T Consensus        74 k~~i~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~--~~~~~g~l~YP~lQaADIl~~~~d~vpvG~DQ~~h~  151 (326)
T d1i6la_          74 QATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGK--EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHI  151 (326)
T ss_dssp             TSEEEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHTTC--SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHH
T ss_pred             ceEEEeecccchHHHHHHHHHhhhhhhhhhhcccchhhcccc--ccCCccccccccccchhHHhcCccccccccchHHHH
Confidence            999999999999999999999999999999999999876543  788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh
Q 014300          239 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR  318 (427)
Q Consensus       239 eLaRdiA~r~n~~yg~~~~~k~~~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~kKI~k  318 (427)
                      |||||||+|||+.||            ..|..|...+...+++++++.||.+|||||+++++++|+|+|+|++|++||++
T Consensus       152 eltRdia~r~n~~~~------------~~~~~~~~~i~~~~~~~~~~~d~~~kmskS~~~~~~~I~l~D~~~~i~kKI~~  219 (326)
T d1i6la_         152 ELTRDLAERFNKRYG------------ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS  219 (326)
T ss_dssp             HHHHHHHHHHHHHHC------------SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccC------------CcccccccccccccceeeecCCccccccccCCCccceeeccCCHHHHHHHHHh
Confidence            999999999999998            45888888877766789998899999999999888999999999999999999


Q ss_pred             ccCCCCCCcccCCCCCCCcchHHHHHHhhCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCHHHHHH
Q 014300          319 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDK  398 (427)
Q Consensus       319 A~Td~~~~~~~~~~~rpev~nll~i~~~~t~~~~eel~~~y~~l~~gdlK~~Lae~I~~~L~pirer~~~~~~d~~~l~~  398 (427)
                      |+||+.+.++++++++|+++|++.+|..+++.+.+++..+|++.++|+||+.|++.|+++|+||||||+++++|+ +|++
T Consensus       220 a~td~~~~~~~~~~~~p~~~~l~~i~~~~~~~~~~e~~~~~~~~~~gdlK~~lae~i~~~L~PiRer~~~l~~~~-~l~~  298 (326)
T d1i6la_         220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESE-ELDR  298 (326)
T ss_dssp             CCCCSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-HHHH
T ss_pred             hhccccCCccccccCCCCccHHHHHHHHcCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCCH-HHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999886 7999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014300          399 VLADGAAKAADIADATLNNVYQAMGFLR  426 (427)
Q Consensus       399 IL~~GaekAr~iA~~tl~~Vr~a~G~~~  426 (427)
                      ||++|++|||++|++||++||++|||.+
T Consensus       299 iL~~Ga~kAr~~A~~tl~~Vr~~~Gl~r  326 (326)
T d1i6la_         299 VLDEGAEKANRVASEMVRKMEQAMGLGR  326 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999964
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure