Citrus Sinensis ID: 014302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
Protein Sequence
MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEcccccccccEEccccccccEEEEEccccccccccccccccccccEEEEEcccccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEEcccccccccEEEEEEcccEEEEcccccEEEEEEcccccEEEEEEccccccccEEEEEEEcccccEEEEEEEEEEEccccccccEEEEEccccccccEEEEEEcccEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEccccEEcccccHHHHHHHHcccccEEcccccccccccccccccccccccccccccccccHHHccccHHHHHHHcccccccccccccEEEEEEcccccEEEEEEcccEEEEEEccccccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEcccccccEEEEEEcccccEEEEEEccccEEEEEEEccccccccccEcccccccHHEccccccEEEEEEcccccEEEEEEcccccccccEEEEEEEccccEEEEEccEEEEccccccccEEEEEccccccccEEEEEEcccEEEEEEEEEEccccc
Coil and Loop (DISEMBL)
mpsfprpgsvtvceinrdlitadnlsddrakdtyGKVLGMvfapvpfqsdelassspdrqeseqrgreegeGLFSTLHGIishsikpllhpdhvhllpevdlqgvswHQHKHIVAFISGSTQVIVRDyedsgkdaciltsdsqrdvkvlewrpnggrslsvgckggiciwapsypgnaasVRSGAASFLGalsrgpgtrwTLVDFLRSqngeqitalswgpdgrfpglgtpirrgfgglsilkwsptgdyffaakfdgtfylwetntwtsepwsstsgfvtgatwdpEGRMILLAFAGsltlgsihfaskppsldahllpvdlpdivsltgsqgiEKIAWDASGERLAVSYKGGDDIYKGLIAIYdarrtplisLSLIgfirgpgdnpkpvafsfhdkfkqgpllsvcwssgfcctyplifrshllp
Flexible Loop (DISEMBL)
mpsfprpgsvtVCEINRdlitadnlsddrAKDTYGKVLGMVFAPVpfqsdelassspdrqesEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAciltsdsqrdvkvlewrpnggrslsvgCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQItalswgpdgrfPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEkiawdasgERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP
Low Complexity Region (SEG)
MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDrqeseqrgreegegLFSTLHGIISHSIKpllhpdhvhllpEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP
Disordered region (IsUnstruct)
*********VTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVP**************************LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH***
Disordered Region (DISOPRED)
*****RPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAP***********************EEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH***
Disordered Region (DISEMBL)
********SVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSD*******************GEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP
Disordered Region (DISPRO)
**SFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELAS*****************GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	427	2.2.26 [Sep-21-2011]
P58742	546	Aladin OS=Mus musculus GN	yes	no	0.707	0.553	0.278	5e-28
Q9NRG9	546	Aladin OS=Homo sapiens GN	yes	no	0.707	0.553	0.283	3e-26

>sp|P58742|AAAS_MOUSE Aladin OS=Mus musculus GN=Aaas PE=1 SV=1

 Score =  125 bits (315), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 145/363 (39%), Gaps = 61/363 (16%)

Query: 102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
           L+  +WH H  K  VA +  S    +R Y  +      L    QR+V  L W+P     L
Sbjct: 154 LRVFAWHPHTNKFAVALLDDS----IRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVL 209

Query: 160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219
           +V C+  I IW       +    SG A  L      P                 +T+L+W
Sbjct: 210 AVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLAW 252

Query: 220 GPDGRFPGLGTPIR-------------------RGFGGLSILKWSPTGDYFFAAKFDGTF 260
            P+G +    +P+                    RG GG++ L WSP G    A      F
Sbjct: 253 APNGGWLLSASPVDAVILVWDVSTETCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVF 311

Query: 261 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 320
            +WE   WT E W + SG      W P+G  +L    G   + S+ F  +  +   H+  
Sbjct: 312 RVWEAQMWTCEAWPTLSGRCQTGCWSPDGNRLLFTVLGEALIYSLSFPERCGTGKGHVGG 371

Query: 321 VDLPDIVSLTGSQGIE-------------KIAWDASGERLAVSYKGGDDIYKG--LIAIY 365
                IV+      I+              + WD SGERLAV  KG   +  G  +I ++
Sbjct: 372 AKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGNPQVQDGNPVILLF 431

Query: 366 DARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 424
             R +P+  L   G I+G PG   + +  +FH  F +G LLSVCWS+G     PL F + 
Sbjct: 432 RTRNSPVFELLPCGIIQGEPGAQAQLI--TFHPSFNKGALLSVCWSTGRITHIPLYFVNA 489

Query: 425 LLP 427
             P
Sbjct: 490 QFP 492

Plays a role in the normal development of the peripheral and central nervous system.
Mus musculus (taxid: 10090)

>sp|Q9NRG9|AAAS_HUMAN Aladin OS=Homo sapiens GN=AAAS PE=1 SV=1

 Score =  120 bits (300), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 143/363 (39%), Gaps = 61/363 (16%)

Query: 102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
           L+  +WH H  K  VA +  S    VR Y  S      L    QR+V  L W+P     L
Sbjct: 154 LRVFAWHPHTNKFAVALLDDS----VRVYNASSTIVPSLKHRLQRNVASLAWKPLSASVL 209

Query: 160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW 219
           +V C+  I IW       +    SG A  L      P                 +T+L+W
Sbjct: 210 AVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTP-----------------VTSLAW 252

Query: 220 GPDGRFPGLGTPIRRGF------------------GGLSILKWSPTGDYFFAAKFDGTFY 261
            P G      +P+                      GG++ L WSP G    A      F 
Sbjct: 253 APSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRGGGVTNLLWSPDGSKILATTPSAVFR 312

Query: 262 LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------AS 309
           +WE   WT E W + SG      W P+G  +L    G   + S+ F             +
Sbjct: 313 VWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPERCGEGKGCVGGA 372

Query: 310 KPPSLDAHL--LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIY 365
           K  ++ A L    +  PD     G +    + WD SGERLAV  KG   +  G  +I ++
Sbjct: 373 KSATIVADLSETTIQTPDGEERLGGEA-HSMVWDPSGERLAVLMKGKPRVQDGKPVILLF 431

Query: 366 DARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH 424
             R +P+  L   G I+G PG  P+ +  +FH  F +G LLSV WS+G     PL F + 
Sbjct: 432 RTRNSPVFELLPCGIIQGEPGAQPQLI--TFHPSFNKGALLSVGWSTGRIAHIPLYFVNA 489

Query: 425 LLP 427
             P
Sbjct: 490 QFP 492

Plays a role in the normal development of the peripheral and central nervous system.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
118486469	449	unknown [Populus trichocarpa]	0.997	0.948	0.735	0.0
224137610	457	predicted protein [Populus trichocarpa]	0.997	0.932	0.724	0.0
225440260	451	PREDICTED: aladin-like [Vitis vinifera]	0.995	0.942	0.729	0.0
449516609	449	PREDICTED: aladin-like [Cucumis sativus]	0.997	0.948	0.726	0.0
30694538	447	aladin-related / adracalin-related prote	1.0	0.955	0.700	0.0
356570401	450	PREDICTED: aladin-like [Glycine max]	1.0	0.948	0.704	0.0
297817004	447	hypothetical protein ARALYDRAFT_486131 [	1.0	0.955	0.697	1e-180
356503340	450	PREDICTED: aladin-like [Glycine max]	0.995	0.944	0.699	1e-179
9663009	440	putative protein [Arabidopsis thaliana]	1.0	0.970	0.706	1e-178
357161113	441	PREDICTED: aladin-like [Brachypodium dis	0.983	0.952	0.6	1e-153

>gi|118486469|gb|ABK95074.1| unknown [Populus trichocarpa]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/450 (73%), Positives = 379/450 (84%), Gaps = 24/450 (5%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP  GSVT+CEINR LI A+ LSDDRAKD YGK+LGMVF+P+PFQ ++L S+  + Q
Sbjct: 1   MPSFPLQGSVTICEINRTLIVAEALSDDRAKDAYGKILGMVFSPIPFQPEQLGSTG-ENQ 59

Query: 61  ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
           ESE + R  GE     GL  +L  +++ SIK + +P+ VHLLPE+DLQGVSWHQH+HI+A
Sbjct: 60  ESEHQERNNGESVERKGLMKSLQYLVNESIKRMFYPNCVHLLPEIDLQGVSWHQHRHIIA 119

Query: 116 FISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174
           FISG  QVIVRDYEDS GKDAC+L++ +Q+D++ LEWRPNGG+SLSV CKGGICIWA SY
Sbjct: 120 FISGPNQVIVRDYEDSEGKDACVLSNGAQQDIRALEWRPNGGKSLSVACKGGICIWAASY 179

Query: 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF--------- 225
           PGN A+VR GAAS LG L+RG G RWTLVDFLRS + EQ +A+SW PDGR+         
Sbjct: 180 PGNPATVRPGAASSLGTLTRGSGGRWTLVDFLRSHSDEQTSAISWSPDGRYLASASCESS 239

Query: 226 --------PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 277
                    GLGTPIRRG GG+S+LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS
Sbjct: 240 SFTIWDVSQGLGTPIRRGLGGISLLKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 299

Query: 278 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 337
           GFVTGATWDP+G +IL+AF+GSLTLGSIHF+SKPPSLDAHLLPVDLP+I ++TGS+GIEK
Sbjct: 300 GFVTGATWDPDGHIILIAFSGSLTLGSIHFSSKPPSLDAHLLPVDLPEITTMTGSEGIEK 359

Query: 338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 397
           IAWDASGERLAVSYKGGDD YKGL+AIYD RRTPLIS SL+GFIRGPGDNPKP+AFSFHD
Sbjct: 360 IAWDASGERLAVSYKGGDDNYKGLVAIYDVRRTPLISASLVGFIRGPGDNPKPIAFSFHD 419

Query: 398 KFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427
           KFKQGPLLSVCWSSGFCCTYPLIF SH LP
Sbjct: 420 KFKQGPLLSVCWSSGFCCTYPLIFHSHSLP 449

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137610|ref|XP_002322600.1| predicted protein [Populus trichocarpa] gi|222867230|gb|EEF04361.1| predicted protein [Populus trichocarpa]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/458 (72%), Positives = 380/458 (82%), Gaps = 32/458 (6%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP  GSVT+CEINR LI A+ LSDDRAKD YGK+LGMVF+P+PFQ ++L S+  + Q
Sbjct: 1   MPSFPLQGSVTICEINRTLIVAEALSDDRAKDAYGKILGMVFSPIPFQPEQLGSTG-ENQ 59

Query: 61  ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
           ESE + R  GE     GL  +L  +++ SIK + +P+ VHLLPE+DLQGVSWHQH+HI+A
Sbjct: 60  ESEHQERNNGESVERKGLMKSLQYLVNESIKRMFYPNCVHLLPEIDLQGVSWHQHRHIIA 119

Query: 116 FISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--------GG 166
           FISG  QVIVRDYEDS GKDAC+L++ +Q+D++ LEWRPNGG+SLSV CK        GG
Sbjct: 120 FISGPNQVIVRDYEDSEGKDACVLSNGAQQDIRALEWRPNGGKSLSVACKQVSKLKFLGG 179

Query: 167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFP 226
           ICIWA SYPGN A+VR GAAS LG L+RG G RWTLVDFLRS + EQ +A+SW PDGR+P
Sbjct: 180 ICIWAASYPGNPATVRPGAASSLGTLTRGSGGRWTLVDFLRSHSDEQTSAISWSPDGRYP 239

Query: 227 -----------------GLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT 269
                            GLGTPIRRG GG+S+LKWSPTGDYFFAAKFDGTFYLWETNTWT
Sbjct: 240 DQFKFESSSFTIWDVSQGLGTPIRRGLGGISLLKWSPTGDYFFAAKFDGTFYLWETNTWT 299

Query: 270 SEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL 329
           SEPWSSTSGFVTGATWDP+G +IL+AF+GSLTLGSIHF+SKPPSLDAHLLPVDLP+I ++
Sbjct: 300 SEPWSSTSGFVTGATWDPDGHIILIAFSGSLTLGSIHFSSKPPSLDAHLLPVDLPEITTM 359

Query: 330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK 389
           TGS+GIEKIAWDASGERLAVSYKGGDD YKGL+AIYD RRTPLIS SL+GFIRGPGDNPK
Sbjct: 360 TGSEGIEKIAWDASGERLAVSYKGGDDNYKGLVAIYDVRRTPLISASLVGFIRGPGDNPK 419

Query: 390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427
           P+AFSFHDKFKQGPLLSVCWSSGFCCTYPLIF SH LP
Sbjct: 420 PIAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFHSHSLP 457

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440260|ref|XP_002283996.1| PREDICTED: aladin-like [Vitis vinifera]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/451 (72%), Positives = 374/451 (82%), Gaps = 26/451 (5%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP+PGSVTVCEINR+LITA NLSDD AKD YGK LGMVF+PVPFQ D+L + SP+  
Sbjct: 1   MRSFPQPGSVTVCEINRNLITALNLSDDGAKDAYGKQLGMVFSPVPFQWDQLLALSPE-H 59

Query: 61  ESEQRGREEGEG-------LFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHI 113
            +EQ  +  GE        L + L  I++ S+K   HP+ V+ LPEVDLQGVSWH+HKHI
Sbjct: 60  GAEQPPQVTGESVAPRRKDLSTALQRIVNDSLKRFFHPNDVNCLPEVDLQGVSWHRHKHI 119

Query: 114 VAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP 172
           +AFISG  QVIVRDYEDS GK+ CILT +SQRDVK++EWRPNGG++LSV CKGGIC+WA 
Sbjct: 120 LAFISGPNQVIVRDYEDSEGKEPCILTHESQRDVKLIEWRPNGGKTLSVACKGGICMWAA 179

Query: 173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF------- 225
           SYPGNAA  RSG A F G ++RG G RWT+VDFL+SQN EQI+ALSW P+GR+       
Sbjct: 180 SYPGNAAIARSGVAPFFGTVARGSGIRWTVVDFLQSQNDEQISALSWSPNGRYLASASYE 239

Query: 226 ----------PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 275
                      GLGTPIRRG GG+SILKWSPTGDYF +AKFDGTFYLWETNTWTSEPWSS
Sbjct: 240 SSSFTIWDVAKGLGTPIRRGLGGISILKWSPTGDYFLSAKFDGTFYLWETNTWTSEPWSS 299

Query: 276 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 335
           TSGFVTGATWDP+G M+L+AF+ S TLGS+HFASKPPSLDAHLLPVDLP+I+SLTGSQGI
Sbjct: 300 TSGFVTGATWDPDGHMVLIAFSKSSTLGSVHFASKPPSLDAHLLPVDLPEIMSLTGSQGI 359

Query: 336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 395
           EKIAWDA+GERLA+SYKGGD++YKGLIAIYD RR PLIS SLIGFIRGPG+NPKP+AFSF
Sbjct: 360 EKIAWDATGERLALSYKGGDELYKGLIAIYDVRRNPLISASLIGFIRGPGENPKPLAFSF 419

Query: 396 HDKFKQGPLLSVCWSSGFCCTYPLIFRSHLL 426
           HDKFKQGPLLSVCWSSGFCCTYPLIFRSH L
Sbjct: 420 HDKFKQGPLLSVCWSSGFCCTYPLIFRSHAL 450

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516609|ref|XP_004165339.1| PREDICTED: aladin-like [Cucumis sativus]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/450 (72%), Positives = 363/450 (80%), Gaps = 24/450 (5%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP PGSVT+CEINRDLITAD LSDDRA DTYGK+LGMVF+PVPFQSD L S +P+ +
Sbjct: 1   MPSFPPPGSVTICEINRDLITADCLSDDRANDTYGKILGMVFSPVPFQSDFLVSPTPEPK 60

Query: 61  ESEQRGREEGE-----GLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
              +     GE     G+ ++L G I  S+  LL P+ V  LP   LQGVSWHQHKHI+A
Sbjct: 61  NEPRNDEVNGEIIQRKGVIASLQGFIEGSVNRLLRPNDVKYLPTEYLQGVSWHQHKHIIA 120

Query: 116 FISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174
           FISG+ QV+VRDYE++ GKD CILT D QRDVKVLEWRPNGGR+LSV CKGGICIWA S+
Sbjct: 121 FISGTNQVVVRDYENAEGKDPCILTHDLQRDVKVLEWRPNGGRTLSVACKGGICIWAASF 180

Query: 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF--------- 225
           PGNAASVR GA SFLG+ SRG G R+TLVDFLRS + EQI+ALSW PDGR+         
Sbjct: 181 PGNAASVRPGAVSFLGSFSRGSGVRYTLVDFLRSHD-EQISALSWSPDGRYLASATYESS 239

Query: 226 --------PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 277
                    GLGTPIRRG G +S +KWSPTGDYFFAAKFDGTFYLWETN+WTSE WSSTS
Sbjct: 240 SFTIWDVAQGLGTPIRRGLGCVSTIKWSPTGDYFFAAKFDGTFYLWETNSWTSEQWSSTS 299

Query: 278 GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 337
           GFVTGA WDPEGRMILLAF+GS  LGSIHFASKPPSL AHLLPVDLP+I + T SQGIEK
Sbjct: 300 GFVTGAIWDPEGRMILLAFSGSSVLGSIHFASKPPSLVAHLLPVDLPEITTSTNSQGIEK 359

Query: 338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 397
           IAWDASGERLAVS+K GD +  GLIA+YD +RTPLI  SLIGFIRGPGDNPKPVAFSFH 
Sbjct: 360 IAWDASGERLAVSFKEGDKLSNGLIAVYDVKRTPLICPSLIGFIRGPGDNPKPVAFSFHG 419

Query: 398 KFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427
           K KQGPLLSVCWSSGFCCTYPLIFRSH++P
Sbjct: 420 KLKQGPLLSVCWSSGFCCTYPLIFRSHVVP 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30694538|ref|NP_191249.2| aladin-related / adracalin-related protein [Arabidopsis thaliana] gi|26452390|dbj|BAC43280.1| unknown protein [Arabidopsis thaliana] gi|28951013|gb|AAO63430.1| At3g56900 [Arabidopsis thaliana] gi|332646063|gb|AEE79584.1| aladin-related / adracalin-related protein [Arabidopsis thaliana]

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/447 (70%), Positives = 361/447 (80%), Gaps = 20/447 (4%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S   +    + Q
Sbjct: 1   MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query: 61  ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
           E+  +   E +GL +TL   ++ S+K +L P  V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61  ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query: 121 TQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179
            QV +RDYED   K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180

Query: 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-------------- 225
            VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALSW P GR+              
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240

Query: 226 ---PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFV 280
               G GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPWS  S SG V
Sbjct: 241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300

Query: 281 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 340
           TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG +GIEKIAW
Sbjct: 301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAW 360

Query: 341 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 400
           DASGERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFK
Sbjct: 361 DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK 420

Query: 401 QGPLLSVCWSSGFCCTYPLIFRSHLLP 427
           QGPLLSVCWS+GFCCTYPLIFRSH+LP
Sbjct: 421 QGPLLSVCWSTGFCCTYPLIFRSHVLP 447

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570401|ref|XP_003553377.1| PREDICTED: aladin-like [Glycine max]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/450 (70%), Positives = 366/450 (81%), Gaps = 23/450 (5%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPF---QSDELASSSP 57
           M SFP PGS+T+CE+NRDLIT D LSDDRA  TYGK+LG+VF+PVPF   ++D      P
Sbjct: 1   MASFPPPGSLTLCEVNRDLITVDALSDDRANQTYGKILGLVFSPVPFHNLENDASDQEGP 60

Query: 58  DRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFI 117
              E+      + +   + L G++++ +  L +P+ VHLLPEVDLQGVSWH +KHI+AFI
Sbjct: 61  TATETAAGESVQRKCPVALLQGLVNNYLGRLFYPNDVHLLPEVDLQGVSWHPNKHIIAFI 120

Query: 118 SGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG 176
           S  TQV+VRDY++S GKD  ILT++SQRD +VLEWRPNGG+ L+VGCKGGIC+WA SYPG
Sbjct: 121 SAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASYPG 180

Query: 177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF----------- 225
           NAASVRSGAASFLG LSR  G R+ LVDFLRS   E ++ALSW PDGR+           
Sbjct: 181 NAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALSWSPDGRYLASASYESSSF 240

Query: 226 ------PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF 279
                  G+GTPIRRG GG+S+LKWSPTGDYFFA+KFDGTFYLWETNTWTSE WSSTSGF
Sbjct: 241 TVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTSGF 300

Query: 280 VT--GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK 337
           V   GATWDP+GRMILLAF+ S TLGSIHFASKPPSLDAHLLPVDLP+I+SLTGSQGIEK
Sbjct: 301 VKVYGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTGSQGIEK 360

Query: 338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD 397
           IAWD SGERLAVS+KGGDD+Y+GLIAIYD RRTPLIS SLIGFIRGPGD PKP++FSFH 
Sbjct: 361 IAWDNSGERLAVSFKGGDDMYRGLIAIYDTRRTPLISTSLIGFIRGPGDKPKPISFSFHG 420

Query: 398 KFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427
           KFKQGPLLSVCWSSGFCCTYPL+FRSH+LP
Sbjct: 421 KFKQGPLLSVCWSSGFCCTYPLLFRSHMLP 450

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817004|ref|XP_002876385.1| hypothetical protein ARALYDRAFT_486131 [Arabidopsis lyrata subsp. lyrata] gi|297322223|gb|EFH52644.1| hypothetical protein ARALYDRAFT_486131 [Arabidopsis lyrata subsp. lyrata]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 312/447 (69%), Positives = 359/447 (80%), Gaps = 20/447 (4%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP PGSVTVCEINRDLITA NLSD+RA +TYGKVLGMVF+PV F S   +    + Q
Sbjct: 1   MASFPHPGSVTVCEINRDLITAQNLSDERALETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query: 61  ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
           E+  +   E +GL +TL   +S  +K +L P  V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61  ENGDKASVESKGLVATLQMKVSDILKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query: 121 TQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179
            QV +RDY+D   K+ C+LTSDSQR VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYDDKDEKEPCVLTSDSQRSVKALEWRPNGGKSLSISCRGGICIWAASYPGNMA 180

Query: 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-------------- 225
            VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALSW P GR+              
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW 240

Query: 226 ---PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFV 280
               G GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPWS  S SG V
Sbjct: 241 DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV 300

Query: 281 TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW 340
           TGA WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTGS+GIEKIAW
Sbjct: 301 TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGSEGIEKIAW 360

Query: 341 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK 400
           DASGERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFK
Sbjct: 361 DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK 420

Query: 401 QGPLLSVCWSSGFCCTYPLIFRSHLLP 427
           QGPLLSVCWS+GFCCTYPLIFRSH+LP
Sbjct: 421 QGPLLSVCWSTGFCCTYPLIFRSHVLP 447

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503340|ref|XP_003520468.1| PREDICTED: aladin-like [Glycine max]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 316/452 (69%), Positives = 365/452 (80%), Gaps = 27/452 (5%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP  GS+T+CE+NRDLIT D LSDDRA  TYGK+LG+VF+PVPF +  L + + D+ 
Sbjct: 1   MASFPPLGSLTLCEVNRDLITVDALSDDRANQTYGKILGLVFSPVPFHN--LENDASDQD 58

Query: 61  ESEQRGREEGEGL-----FSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVA 115
            +       GE +      + L G ++  +  L +PD VHLLPEVDLQGVSWH +KHI+A
Sbjct: 59  GATTTATTAGESVRRKSPVALLQGFMNSYLGRLFYPDDVHLLPEVDLQGVSWHPNKHIIA 118

Query: 116 FISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY 174
           FIS  TQV+VRDY++S GKD  ILT++SQRD +VLEWRPNGG+ L+VGCKGGIC+WA SY
Sbjct: 119 FISAPTQVLVRDYQESEGKDPSILTNESQRDARVLEWRPNGGKMLAVGCKGGICMWAASY 178

Query: 175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF--------- 225
           PGNAASVRSGAASFLG LSR  G R+ LVDFLRS   E ++AL+W PDGR+         
Sbjct: 179 PGNAASVRSGAASFLGGLSRSSGNRYILVDFLRSPYDEHVSALTWSPDGRYLASASYESS 238

Query: 226 --------PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTS 277
                    G+GTPIRRG GG+S+LKWSPTGDYFFA+KFDGTFYLWETNTWTSE WSSTS
Sbjct: 239 SFSVWDFAQGVGTPIRRGLGGISMLKWSPTGDYFFASKFDGTFYLWETNTWTSEQWSSTS 298

Query: 278 GFVT--GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI 335
           GFV   GATWDP+GRMILLAF+ S TLGSIHFASKPPSLDAHLLPVDLP+I+SLTGSQGI
Sbjct: 299 GFVKVYGATWDPDGRMILLAFSESSTLGSIHFASKPPSLDAHLLPVDLPEILSLTGSQGI 358

Query: 336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF 395
           EKIAWD SGERLAVS+KGG+DIY+GLIA+YD RRTPLIS SLIGFIRGPGDNPKP++F F
Sbjct: 359 EKIAWDNSGERLAVSFKGGEDIYRGLIAVYDTRRTPLISTSLIGFIRGPGDNPKPISFLF 418

Query: 396 HDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427
           H KFKQGPLLSVCWSSGFCCTYPL+FRSH+LP
Sbjct: 419 HGKFKQGPLLSVCWSSGFCCTYPLLFRSHMLP 450

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9663009|emb|CAC00753.1| putative protein [Arabidopsis thaliana]

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 311/440 (70%), Positives = 358/440 (81%), Gaps = 13/440 (2%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           M SFP PGSVTVCEINRDLITA NLSD+RA++TYGKVLGMVF+PV F S   +    + Q
Sbjct: 1   MASFPHPGSVTVCEINRDLITAQNLSDERAQETYGKVLGMVFSPVSFDSTPSSLQENEGQ 60

Query: 61  ESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGS 120
           E+  +   E +GL +TL   ++ S+K +L P  V LL E+DLQGVSWHQ KHI+AFISG+
Sbjct: 61  ENGDKASGESKGLVATLQMKVADSLKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA 120

Query: 121 TQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA 179
            QV +RDYED   K+ CILTSDSQR+VK LEWRPNGG+SLS+ C+GGICIWA SYPGN A
Sbjct: 121 NQVTIRDYEDKDEKEPCILTSDSQRNVKALEWRPNGGKSLSIACRGGICIWAASYPGNMA 180

Query: 180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF----------PGLG 229
            VRSG ++  G+LSRG GTRW LVDFLR QN EQI+ALSW P               G G
Sbjct: 181 LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPSSYDSSSFTIWDVSQGAG 240

Query: 230 TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDP 287
           TPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPWS  S SG VTGA WDP
Sbjct: 241 TPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSVTGAIWDP 300

Query: 288 EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL 347
           EGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG +GIEKIAWDASGERL
Sbjct: 301 EGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAWDASGERL 360

Query: 348 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV 407
           AVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFKQGPLLSV
Sbjct: 361 AVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFKQGPLLSV 420

Query: 408 CWSSGFCCTYPLIFRSHLLP 427
           CWS+GFCCTYPLIFRSH+LP
Sbjct: 421 CWSTGFCCTYPLIFRSHVLP 440

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357161113|ref|XP_003578983.1| PREDICTED: aladin-like [Brachypodium distachyon]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 267/445 (60%), Positives = 338/445 (75%), Gaps = 25/445 (5%)

Query: 1   MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQ 60
           MPSFP PG VTVCEINRDL+ AD+LS+DRAK+ YG +LGM+F+P+PFQ D+L +    R 
Sbjct: 1   MPSFPPPGGVTVCEINRDLVVADSLSEDRAKEAYGDLLGMIFSPIPFQPDDLLT----RH 56

Query: 61  ESEQ-RGREEGEGLFSTLHGIISHSIKPLLHPD-HVHLLPEVDLQGVSWHQHKHIVAFIS 118
           E+       E +   ++L   ++ S K +L P     LL E D Q VSW+ HKH +AF+S
Sbjct: 57  EAPAPEDAVEPDAARTSLVSTMAESFKQMLFPSCDPKLLEEFDTQKVSWNPHKHCLAFVS 116

Query: 119 GSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN 177
           G  QV V D+EDS GK++CILTS+ Q++VK +EWRPN G+ ++VGCKG IC+W+ SYPGN
Sbjct: 117 GKDQVTVHDFEDSDGKESCILTSEHQKEVKAIEWRPNSGKMIAVGCKGVICLWSASYPGN 176

Query: 178 AASVRSGA-ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF----------- 225
            ASV+SG  +S  GA  RG   +W LVD LR  + E ++AL W PDGR+           
Sbjct: 177 VASVKSGVTSSSFGAFPRGSRGQWVLVDVLRGTSTELVSALCWKPDGRYLASASCNGQSF 236

Query: 226 ------PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGF 279
                  GLG+PIRRG   +S+++WSP+GDYF  AKFDGTF+LWETNTWTSEPWSS++G+
Sbjct: 237 TIWDVSQGLGSPIRRGLSSISLVRWSPSGDYFLTAKFDGTFHLWETNTWTSEPWSSSNGY 296

Query: 280 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA 339
           VTGA WDPEGR+ LL+F+ S TLGSIHF+SKPPSLDAHLLPV+LP+I SL  S+GIEK+A
Sbjct: 297 VTGANWDPEGRVALLSFSNSTTLGSIHFSSKPPSLDAHLLPVELPEISSLIVSRGIEKLA 356

Query: 340 WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF 399
           WDASGERLA+S+K G++ Y GL+A+YD RR+PLIS+SL+GFIRGPG+  KP+AF+FH+KF
Sbjct: 357 WDASGERLALSFKDGNETYHGLVAVYDVRRSPLISVSLVGFIRGPGEGVKPLAFAFHNKF 416

Query: 400 KQGPLLSVCWSSGFCCTYPLIFRSH 424
           KQGPLLSVCWSSG+CCTYPLI RSH
Sbjct: 417 KQGPLLSVCWSSGWCCTYPLILRSH 441

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
TAIR|locus:2103620	447	AT3G56900 [Arabidopsis thalian	0.470	0.449	0.817	7.1e-167
ZFIN|ZDB-GENE-030912-4	499	aaas "achalasia, adrenocortica	0.733	0.627	0.308	3.6e-34
MGI|MGI:2443767	546	Aaas "achalasia, adrenocortica	0.744	0.582	0.296	3.8e-32
UNIPROTKB|Q9NRG9	546	AAAS "Aladin" [Homo sapiens (t	0.742	0.580	0.301	5.9e-30
UNIPROTKB|H9L088	369	AAAS "Uncharacterized protein"	0.744	0.861	0.282	1.3e-29
RGD|1308701	544	Aaas "achalasia, adrenocortica	0.742	0.582	0.304	1.4e-29
UNIPROTKB|F8VZ44	422	AAAS "Aladin" [Homo sapiens (t	0.742	0.751	0.301	3.1e-28
FB|FBgn0030122	466	CG16892 [Drosophila melanogast	0.693	0.635	0.279	4.2e-22
UNIPROTKB|Q0VC02	556	AAAS "Uncharacterized protein"	0.625	0.480	0.284	9.4e-18
UNIPROTKB|F1SFR0	559	AAAS "Uncharacterized protein"	0.622	0.475	0.288	1.7e-16

TAIR|locus:2103620 AT3G56900 [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 7.1e-167, Sum P(2) = 7.1e-167
 Identities = 166/203 (81%), Positives = 186/203 (91%)

Query:   227 GLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGAT 284
             G GTPIRRG GG+S+LKWSPTGDYFFAA+FDGTF LWETNTWTSEPWS  S SG VTGA 
Sbjct:   245 GAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSVTGAI 304

Query:   285 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG 344
             WDPEGR IL++F+ S TLGS+HF+SKPPSLDAHLLPV+LP+I SLTG +GIEKIAWDASG
Sbjct:   305 WDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGCEGIEKIAWDASG 364

Query:   345 ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPL 404
             ERLAVSYKGGD+ YKGLIAIYD RRTP++S SL+GFIRGPG+NPK ++FSFHDKFKQGPL
Sbjct:   365 ERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFKQGPL 424

Query:   405 LSVCWSSGFCCTYPLIFRSHLLP 427
             LSVCWS+GFCCTYPLIFRSH+LP
Sbjct:   425 LSVCWSTGFCCTYPLIFRSHVLP 447

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

ZFIN|ZDB-GENE-030912-4 aaas "achalasia, adrenocortical insufficiency, alacrimia" [Danio rerio (taxid:7955)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 104/337 (30%), Positives = 145/337 (43%)

Query:   102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
             ++  SWH H  K  VA +  S ++    Y+     A  L    QR V  L+W+P  G +L
Sbjct:   144 VRSFSWHPHTDKFAVALLDDSIKI----YKPHSSTAPTLKHRCQRSVCALQWKPLCGSAL 199

Query:   160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR--WTLVDFLRSQNGEQITAL 217
             +V C+  + IW       +    SG A  L      P T   W+    L        TA+
Sbjct:   200 AVACQSCLLIWHVDPASLSTRPSSGCAQVLSHPGHSPITSIAWSPTGSLLVSASPVDTAM 259

Query:   218 S-WGPDGRFPGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS 275
               W  D        P+RR G GG++ L WSP G    AA     F +WET  WT E W  
Sbjct:   260 MVW--DVAAESC-VPLRRVGGGGVTFLSWSPDGSRLLAATPSALFRVWETRMWTCERWPC 316

Query:   276 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG- 334
               G    A W P+G  +LL+  G   + ++ F+       A  +  DL +  S  G +G 
Sbjct:   317 LKGSCQSACWSPDGACLLLSIQGERLIYALSFSDLTGGPKAATVVADLSE-TSFPGPEGD 375

Query:   335 ------IEKIAWDASGERLAVSYKGGDDI--YKGLIAIYDARRTPLISLSLIGFIRGPGD 386
                   +  ++WD  GERLAV  KG      +  +IA++  R +P   L   GF+ G   
Sbjct:   376 LTVGGEVCSLSWDPRGERLAVLLKGDAQSTDHPSVIAVFKTRCSPAFELLPCGFVMGEA- 434

Query:   387 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS 423
               +P    FH  F+ G LL+VCWS G     P  F S
Sbjct:   435 GAEPRFMQFHPHFQHGALLTVCWSDGRITHVPFYFSS 471

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:2443767 Aaas "achalasia, adrenocortical insufficiency, alacrimia" [Mus musculus (taxid:10090)]

 Score = 333 (122.3 bits), Expect = 3.8e-32, Sum P(2) = 3.8e-32
 Identities = 103/347 (29%), Positives = 145/347 (41%)

Query:   102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
             L+  +WH H  K  VA +  S    +R Y  +      L    QR+V  L W+P     L
Sbjct:   154 LRVFAWHPHTNKFAVALLDDS----IRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVL 209

Query:   160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR--WTLVD-FLRSQNGEQITA 216
             +V C+  I IW       +    SG A  L      P T   W     +L S +      
Sbjct:   210 AVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPNGGWLLSASPVDAVI 269

Query:   217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST 276
             L W        +  P  RG GG++ L WSP G    A      F +WE   WT E W + 
Sbjct:   270 LVWDVSTE-TCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTCEAWPTL 327

Query:   277 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL-------LPVDLPDIVSL 329
             SG      W P+G  +L    G   + S+ F  +  +   H+       +  DL +    
Sbjct:   328 SGRCQTGCWSPDGNRLLFTVLGEALIYSLSFPERCGTGKGHVGGAKSATIVADLSETTIQ 387

Query:   330 T--GSQGI----EKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLISLSLIGFI 381
             T  G + +      + WD SGERLAV  KG   +  G  +I ++  R +P+  L   G I
Sbjct:   388 TPDGEERLGGEAHSMVWDPSGERLAVLMKGNPQVQDGNPVILLFRTRNSPVFELLPCGII 447

Query:   382 RG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427
             +G PG   + +  +FH  F +G LLSVCWS+G     PL F +   P
Sbjct:   448 QGEPGAQAQLI--TFHPSFNKGALLSVCWSTGRITHIPLYFVNAQFP 492

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=ISO

GO:0006913 "nucleocytoplasmic transport" evidence=ISO

GO:0007612 "learning" evidence=IMP

GO:0009566 "fertilization" evidence=IMP

UNIPROTKB|Q9NRG9 AAAS "Aladin" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 5.9e-30, Sum P(2) = 5.9e-30
 Identities = 105/348 (30%), Positives = 142/348 (40%)

Query:   102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
             L+  +WH H  K  VA +  S    VR Y  S      L    QR+V  L W+P     L
Sbjct:   154 LRVFAWHPHTNKFAVALLDDS----VRVYNASSTIVPSLKHRLQRNVASLAWKPLSASVL 209

Query:   160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR--WTLVDF-LRSQNGEQITA 216
             +V C+  I IW       +    SG A  L      P T   W      L S +      
Sbjct:   210 AVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAI 269

Query:   217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST 276
               W        +  P  RG GG++ L WSP G    A      F +WE   WT E W + 
Sbjct:   270 RVWDVSTE-TCVPLPWFRG-GGVTNLLWSPDGSKILATTPSAVFRVWEAQMWTCERWPTL 327

Query:   277 SGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------ASKPPSLDAHL--LPVD 322
             SG      W P+G  +L    G   + S+ F             +K  ++ A L    + 
Sbjct:   328 SGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPERCGEGKGCVGGAKSATIVADLSETTIQ 387

Query:   323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLISLSLIGF 380
              PD     G +    + WD SGERLAV  KG   +  G  +I ++  R +P+  L   G 
Sbjct:   388 TPDGEERLGGEA-HSMVWDPSGERLAVLMKGKPRVQDGKPVILLFRTRNSPVFELLPCGI 446

Query:   381 IRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427
             I+G PG  P+ +  +FH  F +G LLSV WS+G     PL F +   P
Sbjct:   447 IQGEPGAQPQLI--TFHPSFNKGALLSVGWSTGRIAHIPLYFVNAQFP 492

GO:0007612 "learning" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IDA

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

UNIPROTKB|H9L088 AAAS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 98/347 (28%), Positives = 145/347 (41%)

Query:   102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
             ++  +WH H  K  VA +  S    VR Y  S      L    QR+V  + W+P     L
Sbjct:     5 IRAFAWHPHTSKFAVALLDDS----VRVYNSSSATIPSLKHRLQRNVAAVAWKPLCASIL 60

Query:   160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR--WTLVD-FLRSQNGEQITA 216
             +V C+  + +W       +    SG A  L      P T   W      L S +      
Sbjct:    61 AVACQSCVLVWHLDPTSLSTRPSSGCAQVLSYPGHSPVTSLAWAPSGKLLLSASPVDTAM 120

Query:   217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST 276
             L W  D            G GG++ L WSP G    AA     F +WE   WT E W + 
Sbjct:   121 LVW--DVSTENCVQLQWFGGGGVTFLAWSPDGSKVLAATPSAVFKVWEAQMWTCEKWPTI 178

Query:   277 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL-------LPVDLPDIVSL 329
              G      W P+G  +L    G   + S+ F+     +   +       +  DL +    
Sbjct:   179 KGRCQTGCWSPDGSRLLFTVLGESVIYSLSFSEYRGDMQGQVGGSKTASIVADLSETTFE 238

Query:   330 T--GSQ----GIEKIAWDASGERLAVSYKGGDDIYKG---LIAIYDARRTPLISLSLIGF 380
             T  G +     ++ +AWD +GERLAV  +G D    G   ++A++  R +P+  L   GF
Sbjct:   239 TPYGEERVGGAVQSMAWDPTGERLAVIIRG-DPRTAGTQTVVAVFRTRNSPVFELLPCGF 297

Query:   381 IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427
             +RG   + +P   +FH  F++G LL+VCWS+G     P  F S  +P
Sbjct:   298 LRGE-QSAEPQLIAFHPCFQKGALLTVCWSTGTISHIPFFFLSTHVP 343

GO:0005643 "nuclear pore" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

RGD|1308701 Aaas "achalasia, adrenocortical insufficiency, alacrimia" [Rattus norvegicus (taxid:10116)]

 Score = 332 (121.9 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 106/348 (30%), Positives = 145/348 (41%)

Query:   102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
             L+  +WH H  K  VA +  S    +R Y  +      L    QR+V  L W+P     L
Sbjct:   152 LRVFAWHPHTNKFAVALLDDS----IRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVL 207

Query:   160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR--WTLVD-FLRSQNGEQITA 216
             +V C+  I IW       +    SG A  L      P T   W     +L S +      
Sbjct:   208 AVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPNGGWLLSASPVDAVI 267

Query:   217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST 276
             L W        +  P  RG GG++ L WSP G    A      F +WE   WT E W + 
Sbjct:   268 LVWDVSTE-TCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVFRVWEARMWTCEGWPTL 325

Query:   277 SGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------ASKPPSLDAHL--LPVD 322
             SG      W P+G+ +L    G   + S+ F             +K  ++ A L    + 
Sbjct:   326 SGRCQTGCWSPDGKRLLFTVLGEALIYSLSFPEPCGTEKGHVGGAKSATIVADLSETTIQ 385

Query:   323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLISLSLIGF 380
              PD     G +    + WD SGERLAV  KG   +  G  +I ++  R +P+  L   G 
Sbjct:   386 TPDGEERLGGEA-HAMVWDPSGERLAVLMKGNPRVQDGNPVILLFRTRNSPVFELLPCGV 444

Query:   381 IRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427
             I+G PG   + V  SFH  F +G LLSVCWS+G     PL F +   P
Sbjct:   445 IQGEPGAQAQLV--SFHPAFNKGALLSVCWSTGRITHIPLYFVNAQFP 490

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005643 "nuclear pore" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0006913 "nucleocytoplasmic transport" evidence=ISO

GO:0007612 "learning" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0009566 "fertilization" evidence=ISO

GO:0031965 "nuclear membrane" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F8VZ44 AAAS "Aladin" [Homo sapiens (taxid:9606)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 105/348 (30%), Positives = 142/348 (40%)

Query:   102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
             L+  +WH H  K  VA +  S    VR Y  S      L    QR+V  L W+P     L
Sbjct:    30 LRVFAWHPHTNKFAVALLDDS----VRVYNASSTIVPSLKHRLQRNVASLAWKPLSASVL 85

Query:   160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR--WTLVDF-LRSQNGEQITA 216
             +V C+  I IW       +    SG A  L      P T   W      L S +      
Sbjct:    86 AVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAI 145

Query:   217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST 276
               W        +  P  RG GG++ L WSP G    A      F +WE   WT E W + 
Sbjct:   146 RVWDVSTE-TCVPLPWFRG-GGVTNLLWSPDGSKILATTPSAVFRVWEAQMWTCERWPTL 203

Query:   277 SGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------ASKPPSLDAHL--LPVD 322
             SG      W P+G  +L    G   + S+ F             +K  ++ A L    + 
Sbjct:   204 SGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPERCGEGKGCVGGAKSATIVADLSETTIQ 263

Query:   323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLISLSLIGF 380
              PD     G +    + WD SGERLAV  KG   +  G  +I ++  R +P+  L   G 
Sbjct:   264 TPDGEERLGGEA-HSMVWDPSGERLAVLMKGKPRVQDGKPVILLFRTRNSPVFELLPCGI 322

Query:   381 IRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP 427
             I+G PG  P+ +  +FH  F +G LLSV WS+G     PL F +   P
Sbjct:   323 IQGEPGAQPQLI--TFHPSFNKGALLSVGWSTGRIAHIPLYFVNAQFP 368

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

FB|FBgn0030122 CG16892 [Drosophila melanogaster (taxid:7227)]

 Score = 275 (101.9 bits), Expect = 4.2e-22, P = 4.2e-22
 Identities = 94/336 (27%), Positives = 157/336 (46%)

Query:   101 DLQGVSWHQHKHIVAFISGSTQVIVRDY--EDSGKDACILTSDSQRDVKVLEWRPNGGRS 158
             D++ ++W+QH   +A ++G   V VR Y    S   A +L S SQ  +  + WRP     
Sbjct:   139 DVRYLAWNQHFFCLA-VAGVDDV-VRIYTKSSSATTATVLKSPSQTQITCMAWRPLCASE 196

Query:   159 LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRG-PGT--RWTL--VDFLRSQNGEQ 213
             + +GC+ G+C W      +    R+ A S +       P T  +W         +  G++
Sbjct:   197 IVIGCRQGLCFWEVDSTLHLG--RTNAPSEIFKYPNNLPITSMQWNKDGTQLATASIGDR 254

Query:   214 ITALSWGPDGRFPGLGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTSE 271
              + + W PD    G+  P++R G  G S+LKWSP  D+ FAA  D  F +W  +  WT+E
Sbjct:   255 -SIIIWQPD---TGMMQPLKRLGPPG-SLLKWSPDNDWLFAATVDRVFRVWNCHQQWTTE 309

Query:   272 PW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP---PSLDA-HLLPV-DLPD 325
              W     G+V  A W P GR +L   +    L  + F  +     S D   +LP+ DL +
Sbjct:   310 RWVCGPGGYVQTACWSPCGRFLLFVSSAEPILYRLQFVQQSLLSSSADEKEILPIADL-N 368

Query:   326 IVSLTGSQGI-----EKIAWDASGERLAVSYKGGDDI--YKGLIAIYDARRTPLISLSLI 378
               S+  ++ +     +++AWD  G  L V++K  + I  ++  I  +D + +    LS  
Sbjct:   369 ACSIDANRTLVGGPAQQLAWDPHGNYLVVTFKATNCIAVFRTFIQKFDLQISAAYYLS-- 426

Query:   379 GFIRGPGDNPKPVAFS--FHDKFKQGPLLSVCWSSG 412
             G      ++P  + F   + D  +   +L++ WSSG
Sbjct:   427 G--ETAAEHPSFICFQPLYEDNDRS--VLTIAWSSG 458

GO:0003674 "molecular_function" evidence=ND

GO:0005643 "nuclear pore" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

UNIPROTKB|Q0VC02 AAAS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 240 (89.5 bits), Expect = 9.4e-18, Sum P(2) = 9.4e-18
 Identities = 84/295 (28%), Positives = 114/295 (38%)

Query:   102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
             L+  +WH H  K  VA +  S    VR Y  +      L    QR+V  L W+P     L
Sbjct:   154 LRVFAWHPHTNKFAVALLDDS----VRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVL 209

Query:   160 SVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTR--WTLVDF-LRSQNGEQITA 216
             +V C+  I IW       +    SG A  L      P T   W      L S +      
Sbjct:   210 AVACQSCILIWTLDPTSLSTRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDAAI 269

Query:   217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST 276
             L W        +  P  RG GG++ L WSP G    A      F +WE   WT E W + 
Sbjct:   270 LVWDVSTE-TCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVFRVWEAQMWTCERWPTL 327

Query:   277 SGFVTGATWDPEGRMILLAFAGSLTLGSIHF------------ASKPPSLDAHL--LPVD 322
             SG      W P G  +L    G   + S+ F             +K  ++ A L    + 
Sbjct:   328 SGRCQTGCWSPSGNRLLFTVLGEPLIYSLSFPERCGEGKGYVGGAKSATIVADLSETTIQ 387

Query:   323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLISL 375
              PD     G +    + WD SGERLAV  KG   +  G  +I ++  R +P+  L
Sbjct:   388 TPDGEERLGGEA-HSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFEL 441

GO:0031965 "nuclear membrane" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

UNIPROTKB|F1SFR0 AAAS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 229 (85.7 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 86/298 (28%), Positives = 119/298 (39%)

Query:   102 LQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
             L+  +WH H  K  VA +  S    +R Y  +      L    QR+V  L W+P     L
Sbjct:   154 LRVFAWHPHTNKFAVALLDDS----IRVYNANSTIVPSLKHRLQRNVAALAWKPLSASVL 209

Query:   160 SVGCKGGICIWAPSYPGNAASVR--SGAASFLGALSRGPGTR--WTLVDF-LRSQNGEQI 214
             +V C+  I IW    P + ++ R  SG A  L      P T   W      L S +    
Sbjct:   210 AVACQSCILIWTLD-PTSLSTRRPSSGCAQVLSHPGHTPVTSLAWAPSGGRLLSASPVDA 268

Query:   215 TALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFY--LWETNTWTSEP 272
               L W        +  P  RG GG++ L WSP G    A      F   +WE   WT E 
Sbjct:   269 AILVWDVSTE-TCVPLPWFRG-GGVTNLLWSPDGSKVLATTPSAVFRRRVWEAQMWTCER 326

Query:   273 WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF-----------ASKPPSLDAHL--L 319
             W + SG      W P+G  +L    G   + S+ F            +K  ++ A L   
Sbjct:   327 WPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLLFPEHGEGKGCVGGAKSATIVADLSET 386

Query:   320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG--LIAIYDARRTPLISL 375
              V  PD     G +    + WD SGERLAV  KG   +  G  +I ++  R +P+  L
Sbjct:   387 TVQTPDGEERLGGEA-HSMVWDPSGERLAVLMKGNPRVQNGKPVILLFRTRNSPVFEL 443

GO:0031965 "nuclear membrane" evidence=IEA

GO:0009566 "fertilization" evidence=IEA

GO:0007612 "learning" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	427
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-06

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 52/371 (14%), Positives = 110/371 (29%), Gaps = 52/371 (14%)

Query: 40  MVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHLLPE 99
              +    +  + +   P             E     L  +    +        +    E
Sbjct: 6   STSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHE 65

Query: 100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSL 159
             +  +++     ++   S    + + D ++  K    L       V  L      G S+
Sbjct: 66  DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSI 125

Query: 160 SVGCKGG---ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD------------ 204
            +        + +W  S PG       G +  + +L+  P  +                 
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 205 ----FLRSQNGE--QITALSWGPDGRFPGLG------------------TPIRRGFGGLS 240
                L +  G    +++L++ PDG                             G     
Sbjct: 186 RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245

Query: 241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFA- 297
           +  +SP G    +   DGT  LW+  + +S   + +  S  V    + P+G+++    + 
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 298 GSLTLGSI--HFASKPPSLDAHLLPV-------DLPDIVSLTGSQGIEKIAWDASGERLA 348
           G++ L  +         +L  H  PV       D   +VS     G  ++ WD    +  
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL-WDLRTGKPL 364

Query: 349 VSYKGGDDIYK 359
            + +G  ++  
Sbjct: 365 KTLEGHSNVLS 375

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	427
KOG2139	445	consensus WD40 repeat protein [General function pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.96
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.94
KOG0266	456	consensus WD40 repeat-containing protein [General	99.94
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.94
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.94
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.94
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.93
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0645	312	consensus WD40 repeat protein [General function pr	99.93
KOG0286	343	consensus G-protein beta subunit [General function	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.93
PTZ00421	493	coronin; Provisional	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.92
KOG0266	456	consensus WD40 repeat-containing protein [General	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.91
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.91
KOG0296	399	consensus Angio-associated migratory cell protein	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.9
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.9
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.9
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.9
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.89
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.89
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.88
PTZ00420	568	coronin; Provisional	99.88
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.88
PTZ00420	568	coronin; Provisional	99.88
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.88
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.88
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.88
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.88
KOG0643	327	consensus Translation initiation factor 3, subunit	99.88
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.87
PLN00181	793	protein SPA1-RELATED; Provisional	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.87
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.87
PTZ00421	493	coronin; Provisional	99.87
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.86
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.86
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.86
KOG0296	399	consensus Angio-associated migratory cell protein	99.86
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.85
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.85
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.85
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.85
KOG2096	420	consensus WD40 repeat protein [General function pr	99.85
KOG0289	506	consensus mRNA splicing factor [General function p	99.85
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.85
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.85
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.85
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.84
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.84
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.84
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.84
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.84
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.83
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.83
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.83
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.83
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.82
KOG0646	476	consensus WD40 repeat protein [General function pr	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.82
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.82
KOG0289	506	consensus mRNA splicing factor [General function p	99.82
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.81
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.81
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.81
KOG0641	350	consensus WD40 repeat protein [General function pr	99.81
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.81
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG1539	910	consensus WD repeat protein [General function pred	99.8
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.8
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.8
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.8
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.79
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.79
KOG0639	705	consensus Transducin-like enhancer of split protei	99.79
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.77
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.77
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.76
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.76
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.76
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.75
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.74
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.74
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.74
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.74
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.73
KOG0267	825	consensus Microtubule severing protein katanin p80	99.73
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.73
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.73
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.73
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.73
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.72
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.72
KOG2055	514	consensus WD40 repeat protein [General function pr	99.72
KOG0641	350	consensus WD40 repeat protein [General function pr	99.71
KOG0643	327	consensus Translation initiation factor 3, subunit	99.71
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.71
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.7
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.69
KOG2096	420	consensus WD40 repeat protein [General function pr	99.69
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.68
KOG0267	825	consensus Microtubule severing protein katanin p80	99.67
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.67
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.67
PRK11028	330	6-phosphogluconolactonase; Provisional	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
KOG2048	691	consensus WD40 repeat protein [General function pr	99.67
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.67
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.66
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.65
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG0639	705	consensus Transducin-like enhancer of split protei	99.65
KOG1539	910	consensus WD repeat protein [General function pred	99.65
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.64
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.64
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.64
KOG1273	405	consensus WD40 repeat protein [General function pr	99.63
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.63
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.63
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.63
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.62
KOG2048	691	consensus WD40 repeat protein [General function pr	99.62
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.61
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.61
KOG1274	933	consensus WD40 repeat protein [General function pr	99.6
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.6
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.6
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.6
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.6
KOG0646	476	consensus WD40 repeat protein [General function pr	99.6
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.59
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.58
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.58
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.57
PRK11028	330	6-phosphogluconolactonase; Provisional	99.57
PRK05137	435	tolB translocation protein TolB; Provisional	99.57
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.57
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.56
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
PRK04922	433	tolB translocation protein TolB; Provisional	99.54
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.54
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.53
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.53
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.52
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.52
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.52
PRK05137	435	tolB translocation protein TolB; Provisional	99.51
PRK03629	429	tolB translocation protein TolB; Provisional	99.5
KOG1310	758	consensus WD40 repeat protein [General function pr	99.49
KOG1963	792	consensus WD40 repeat protein [General function pr	99.49
KOG4227	609	consensus WD40 repeat protein [General function pr	99.48
KOG4328	498	consensus WD40 protein [Function unknown]	99.48
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.48
PRK02889	427	tolB translocation protein TolB; Provisional	99.48
KOG1188	376	consensus WD40 repeat protein [General function pr	99.47
KOG2139	445	consensus WD40 repeat protein [General function pr	99.47
PRK04922	433	tolB translocation protein TolB; Provisional	99.47
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.46
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.45
KOG0649	325	consensus WD40 repeat protein [General function pr	99.44
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.42
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.41
PRK04792	448	tolB translocation protein TolB; Provisional	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.39
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.39
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.36
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.36
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.35
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.33
COG2319	466	FOG: WD40 repeat [General function prediction only	99.33
KOG1334	559	consensus WD40 repeat protein [General function pr	99.32
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.32
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.32
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.32
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.29
COG2319	466	FOG: WD40 repeat [General function prediction only	99.29
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.28
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.28
PRK00178	430	tolB translocation protein TolB; Provisional	99.27
KOG1310	758	consensus WD40 repeat protein [General function pr	99.26
PRK01029	428	tolB translocation protein TolB; Provisional	99.26
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.25
KOG1188	376	consensus WD40 repeat protein [General function pr	99.25
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.24
PRK04043	419	tolB translocation protein TolB; Provisional	99.24
KOG2321	703	consensus WD40 repeat protein [General function pr	99.22
KOG1963	792	consensus WD40 repeat protein [General function pr	99.22
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.22
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.17
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.17
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.16
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.14
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.13
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.1
PRK04043	419	tolB translocation protein TolB; Provisional	99.1
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.1
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.08
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.08
KOG2315	566	consensus Predicted translation initiation factor	99.01
KOG2314	698	consensus Translation initiation factor 3, subunit	99.0
KOG4227	609	consensus WD40 repeat protein [General function pr	99.0
KOG2314	698	consensus Translation initiation factor 3, subunit	98.98
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.96
KOG2315	566	consensus Predicted translation initiation factor	98.96
KOG0649	325	consensus WD40 repeat protein [General function pr	98.95
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.95
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.94
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.92
KOG4547	541	consensus WD40 repeat-containing protein [General	98.9
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	98.89
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.87
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.86
COG4946	668	Uncharacterized protein related to the periplasmic	98.83
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.8
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.8
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.79
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.76
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.75
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.73
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.7
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.68
KOG2321	703	consensus WD40 repeat protein [General function pr	98.67
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.66
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.64
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.62
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.59
KOG3881	412	consensus Uncharacterized conserved protein [Funct	98.57
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.54
COG4946	668	Uncharacterized protein related to the periplasmic	98.5
KOG1334	559	consensus WD40 repeat protein [General function pr	98.48
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	98.47
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.44
KOG4547	541	consensus WD40 repeat-containing protein [General	98.44
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.43
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.41
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.4
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.35
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.33
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.3
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.27
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.26
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.26
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.19
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.17
KOG2695	425	consensus WD40 repeat protein [General function pr	98.06
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.05
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.04
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.04
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.04
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.0
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.97
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.95
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.95
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.94
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.94
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.94
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.93
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.92
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	97.92
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.9
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	97.86
KOG0280	339	consensus Uncharacterized conserved protein [Amino	97.84
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	97.83
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.79
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.64
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	97.61
KOG4714	319	consensus Nucleoporin [Nuclear structure]	97.58
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.57
PRK02888	635	nitrous-oxide reductase; Validated	97.56
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.54
PRK02888	635	nitrous-oxide reductase; Validated	97.51
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.44
PRK13616	591	lipoprotein LpqB; Provisional	97.44
PRK13616	591	lipoprotein LpqB; Provisional	97.43
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.4
KOG2695	425	consensus WD40 repeat protein [General function pr	97.37
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.32
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.21
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.2
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.16
KOG3621	726	consensus WD40 repeat-containing protein [General	97.14
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.1
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.07
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.01
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.99
KOG3621	726	consensus WD40 repeat-containing protein [General	96.97
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.95
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.77
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.74
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.74
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.68
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.63
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.52
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.49
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.47
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.42
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.37
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	96.35
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.33
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.33
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.21
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.11
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.06
COG3391	381	Uncharacterized conserved protein [Function unknow	96.06
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.05
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.03
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.01
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.97
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.88
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.62
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.4
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.34
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.25
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.13
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.08
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	94.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.77
KOG2395	644	consensus Protein involved in vacuole import and d	94.75
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	94.7
COG3391	381	Uncharacterized conserved protein [Function unknow	94.61
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.34
PF14727	418	PHTB1_N: PTHB1 N-terminus	94.3
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.23
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	94.12
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.09
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	93.96
PRK10115	686	protease 2; Provisional	93.42
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.4
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.3
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	92.81
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	92.54
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.51
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.38
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	92.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.13
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.97
KOG2395	644	consensus Protein involved in vacuole import and d	91.82
KOG2377	657	consensus Uncharacterized conserved protein [Funct	91.66
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.66
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	91.27
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	91.24
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.21
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	91.18
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	91.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.0
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.74
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	90.6
PRK10115	686	protease 2; Provisional	90.45
KOG2444	238	consensus WD40 repeat protein [General function pr	90.16
KOG2247	615	consensus WD40 repeat-containing protein [General	90.14
PRK13684	334	Ycf48-like protein; Provisional	90.14
COG5276	370	Uncharacterized conserved protein [Function unknow	89.93
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	89.86
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.84
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.67
COG4590	733	ABC-type uncharacterized transport system, permeas	89.35
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	89.21
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	88.95
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.82
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.59
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	87.65
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	87.57
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	86.6
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	86.03
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	85.81
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	85.26
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	84.56
PF13449	326	Phytase-like: Esterase-like activity of phytase	84.01
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	83.43
PRK13684	334	Ycf48-like protein; Provisional	83.32
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.02
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	82.63
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	82.57
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	82.24
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	81.93
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	81.59
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	81.51
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	80.93
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	80.76

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.9e-49  Score=339.26  Aligned_cols=407  Identities=39%  Similarity=0.670  Sum_probs=333.7

Q ss_pred             CCCCCCCCceEEEEEcceeeeecccCcchhhhhhcccceeeeccCCCCCccccCCCCCchhhhhccccccccchhhhhhh
Q 014302            1 MPSFPRPGSVTVCEINRDLITADNLSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGI   80 (427)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   80 (427)
                      |-+||+||.+|++++|+|+.++...++.+..+.++||+|++|.++-|..-.+...+.|.|.. +......+.++++++..
T Consensus         1 ~~s~P~~~r~pv~~ln~dll~~p~~~d~~~~E~v~Kr~~~vf~~vgf~~tl~e~~~~E~E~~-~~~~~as~~~~a~l~~a   79 (445)
T KOG2139|consen    1 MASFPHPGRVPVCELNRDLLTAPNLSDERAQETVGKRLGMVFSPVGFDSTLSELQENEGENG-DKASGASKGLVATLQMA   79 (445)
T ss_pred             CCCCCCCCccceEEecchhhcCCccchhhHHHHHHhhhheeecccccccchHHhhCcccccc-hhhcccchHHHHHHHHh
Confidence            67899999999999999999999999999999999999999999988754332222222211 12234567788888888


Q ss_pred             hhccccccccCCCCCCCCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEE
Q 014302           81 ISHSIKPLLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS  160 (427)
Q Consensus        81 ~~~~~~~~~~p~~~~~l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la  160 (427)
                      +....++...+.+...+.+..++.++||+.-..+|++..|.+|++|+-+..  .+..+++..+..|++++|.|.+...|+
T Consensus        80 ~~l~~~~Iaqf~~vt~ws~~dlr~~aWhqH~~~fava~nddvVriy~ksst--~pt~Lks~sQrnvtclawRPlsasela  157 (445)
T KOG2139|consen   80 VALSLKQIAQFTDVTLWSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST--CPTKLKSVSQRNVTCLAWRPLSASELA  157 (445)
T ss_pred             hhhhHHHhhchhhhhhhhhcceeeEeechhhhhhhhhccCcEEEEeccCCC--CCceecchhhcceeEEEeccCCcceee
Confidence            888888888777888889999999999998788999999999999886653  666777778889999999999999999


Q ss_pred             EecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-----------
Q 014302          161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-----------  229 (427)
Q Consensus       161 ~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-----------  229 (427)
                      +|+..+|+||..+.+.+......+.             .-...+.+++..+.+|++++|++||..+.+.           
T Consensus       158 vgCr~gIciW~~s~tln~~r~~~~~-------------s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWd  224 (445)
T KOG2139|consen  158 VGCRAGICIWSDSRTLNANRNIRMM-------------STHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWD  224 (445)
T ss_pred             eeecceeEEEEcCcccccccccccc-------------cccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEc
Confidence            9999999999998555443322221             1134566777778999999999999875433           


Q ss_pred             ------ceEE-eccCCeEEEEEccCCCEEEEEecCCcEEEE-EcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302          230 ------TPIR-RGFGGLSILKWSPTGDYFFAAKFDGTFYLW-ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT  301 (427)
Q Consensus       230 ------~~~~-~~~~~v~~~~~sp~g~~l~~~~~dg~v~iw-d~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~  301 (427)
                            .+++ ...+++.-+.|||||.+|++++.|+..++| ..+++.++++.-..+.|...+|+|+|++|++++.....
T Consensus       225 pdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~  304 (445)
T KOG2139|consen  225 PDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPR  304 (445)
T ss_pred             CCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCce
Confidence                  2233 355788899999999999999999999999 56777788888777799999999999999999999999


Q ss_pred             eeeeeeCCCCCCcc------ccccccccccceeecc----CCceeEEEECCCCCEEEEEEecCC--CcceeEEEEEEecc
Q 014302          302 LGSIHFASKPPSLD------AHLLPVDLPDIVSLTG----SQGIEKIAWDASGERLAVSYKGGD--DIYKGLIAIYDARR  369 (427)
Q Consensus       302 i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~i~~v~~sp~g~~La~~~~~~~--d~~~g~i~vwd~~~  369 (427)
                      ++...+..+...+.      .+..+.++++.....+    ++.+.+++|+|.|.+||+.+++.+  ......|.+||.+.
T Consensus       305 lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  305 LYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             EEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence            99999988754443      6667777777766655    679999999999999999999987  22236688999999


Q ss_pred             CceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccccCCCCC
Q 014302          370 TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHLLP  427 (427)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~~~~~  427 (427)
                      .+.+.+.++|++.++.    |.-++|+|-+++|.+|+|+|+.|+|+.|||+|..+-+|
T Consensus       385 sp~vels~cg~i~ge~----P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~f~~~~~p  438 (445)
T KOG2139|consen  385 SPPVELSYCGMIGGEY----PAYISFGPLKNEGRLLSIAWSTGRIQRYPLTFQCFRDP  438 (445)
T ss_pred             cCceEEEecccccCCC----CceEEeeecccCCcEEEEEeccCceEeeeeEEEeeccc
Confidence            9999999999988755    55788999899999999999999999999999988765

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.6e-32  Score=237.70  Aligned_cols=259  Identities=14%  Similarity=0.206  Sum_probs=211.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC-CCceEEEe-cCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN-GGRSLSVG-CKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~la~g-~~~~i~iw~~~~~~~~  178 (427)
                      +|..+.|++|+..||||+.+|.++||.....  .......+|...|.++.|+|. ...-+|++ .|+++++|+++     
T Consensus       177 Pis~~~fS~ds~~laT~swsG~~kvW~~~~~--~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-----  249 (459)
T KOG0272|consen  177 PISGCSFSRDSKHLATGSWSGLVKVWSVPQC--NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-----  249 (459)
T ss_pred             cceeeEeecCCCeEEEeecCCceeEeecCCc--ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC-----
Confidence            8999999999999999999999999998877  566777899999999999998 34455555 56999999998     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------EEeccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------IRRGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~v~~  241 (427)
                                          .-.++..+.+| ..+|..++|+|+|++++++..                 ..+|..+|.+
T Consensus       250 --------------------~e~~l~~l~gH-~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~  308 (459)
T KOG0272|consen  250 --------------------QETPLQDLEGH-LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFS  308 (459)
T ss_pred             --------------------CCcchhhhhcc-hhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccce
Confidence                                22467778888 799999999999999886642                 4568999999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHL  318 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~  318 (427)
                      ++|+|||..+++|+.|..=+|||++++.+..+. +|...|.+|.|+|+|..||++++++ ++++|++.....  .+.+|.
T Consensus       309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn-t~kVWDLR~r~~ly~ipAH~  387 (459)
T KOG0272|consen  309 IAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN-TCKVWDLRMRSELYTIPAHS  387 (459)
T ss_pred             eEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC-cEEEeeecccccceeccccc
Confidence            999999999999999999999999999996555 9999999999999999999876555 888888877532  233333


Q ss_pred             cccccccceeeccCCceeEEEECC-CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp-~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                                    .-|+.|.|+| .|.+|++   ++-|   .+++||...+..++     ..+.  +...++.++...+
T Consensus       388 --------------nlVS~Vk~~p~~g~fL~T---asyD---~t~kiWs~~~~~~~-----ksLa--GHe~kV~s~Dis~  440 (459)
T KOG0272|consen  388 --------------NLVSQVKYSPQEGYFLVT---ASYD---NTVKIWSTRTWSPL-----KSLA--GHEGKVISLDISP  440 (459)
T ss_pred             --------------chhhheEecccCCeEEEE---cccC---cceeeecCCCcccc-----hhhc--CCccceEEEEecc
Confidence                          3789999998 7888888   5555   66999999887665     2222  3444577888877


Q ss_pred             CCCCCceeEEEeeCceEEEEe
Q 014302          398 KFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       398 ~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      +   +..++.+.-|-.|.||.
T Consensus       441 d---~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  441 D---SQAIATSSFDRTIKLWR  458 (459)
T ss_pred             C---CceEEEeccCceeeecc
Confidence            6   56677776788888874

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-31  Score=229.32  Aligned_cols=289  Identities=20%  Similarity=0.313  Sum_probs=205.6

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEe
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWA  171 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~  171 (427)
                      .-+.+|  .|-|++|+|+|.+||+|+.|.++|+||+.+.  .+.....+|...|.|++|+||| ..||+|+. |.|++||
T Consensus       109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRLWD  185 (480)
T ss_pred             cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--CcceeecCCccEEEEEEECCCc-chhhccccCCeEEEec
Confidence            344566  8999999999999999999999999999988  5667778999999999999999 67777765 9999999


Q ss_pred             ccCCCCccccccC-----------------cccccccccCCCCcce------eEeehhcccCCCceeeeEeCCCCCCcc-
Q 014302          172 PSYPGNAASVRSG-----------------AASFLGALSRGPGTRW------TLVDFLRSQNGEQITALSWGPDGRFPG-  227 (427)
Q Consensus       172 ~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~spdg~~l~-  227 (427)
                      -..++..-..-.+                 +...+..-++++.-.+      .++..+.+| ..+|+|+.|.-+|-+-. 
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~VTCvrwGG~gliySg  264 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASVTCVRWGGEGLIYSG  264 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccceEEEEEcCCceEEec
Confidence            7633221111111                 1112222233433222      133445555 78888888875543200 


Q ss_pred             ---------------cCceEEeccCCeEEEEEc-----------cCCC-------------------------EEEEEec
Q 014302          228 ---------------LGTPIRRGFGGLSILKWS-----------PTGD-------------------------YFFAAKF  256 (427)
Q Consensus       228 ---------------~~~~~~~~~~~v~~~~~s-----------p~g~-------------------------~l~~~~~  256 (427)
                                     ....+++|...|..++.|           |.++                         .|++|++
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence                           112355677777777755           3343                         3888998


Q ss_pred             CCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCccccccccccccceeeccC
Q 014302          257 DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       257 dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      |.++.+|+....+.  ....+|..-|..+.||||++++++++-+. .++.|+-.+.  ..++.||..             
T Consensus       345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-SVkLW~g~tGk~lasfRGHv~-------------  410 (480)
T KOG0271|consen  345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-SVKLWDGRTGKFLASFRGHVA-------------  410 (480)
T ss_pred             CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-ceeeeeCCCcchhhhhhhccc-------------
Confidence            99999998655443  34458999999999999999999886555 6666665554  236677776             


Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g  412 (427)
                       .|..++|+.|.++|++   ++.|   .++++|++++.++..-       -++....+.++.|.|+   |..++-|-.|-
T Consensus       411 -~VYqvawsaDsRLlVS---~SkD---sTLKvw~V~tkKl~~D-------LpGh~DEVf~vDwspD---G~rV~sggkdk  473 (480)
T KOG0271|consen  411 -AVYQVAWSADSRLLVS---GSKD---STLKVWDVRTKKLKQD-------LPGHADEVFAVDWSPD---GQRVASGGKDK  473 (480)
T ss_pred             -eeEEEEeccCccEEEE---cCCC---ceEEEEEeeeeeeccc-------CCCCCceEEEEEecCC---CceeecCCCce
Confidence             7799999999999988   6666   6799999999887522       2334444789999986   88888887887


Q ss_pred             eEEEEe
Q 014302          413 FCCTYP  418 (427)
Q Consensus       413 ~i~~~~  418 (427)
                      .+.||.
T Consensus       474 v~~lw~  479 (480)
T KOG0271|consen  474 VLRLWR  479 (480)
T ss_pred             EEEeec
Confidence            777763

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=1.7e-29  Score=223.77  Aligned_cols=260  Identities=22%  Similarity=0.374  Sum_probs=196.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+.+|..||+|+.||.+++|+....   .......|.++|.++.|+.+|.++|+.+.|+++.+||..       
T Consensus       237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~---l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~-------  306 (524)
T KOG0273|consen  237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGN---LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH-------  306 (524)
T ss_pred             CcceEEecCCCCeEEEeecCcEEEEEecCch---hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc-------
Confidence            8999999999999999999999999998765   666677899999999999999777888888999999986       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC---------CCCC----cc---cCceEEeccCCeEEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP---------DGRF----PG---LGTPIRRGFGGLSILKW  244 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---------dg~~----l~---~~~~~~~~~~~v~~~~~  244 (427)
                        ++                ...+.+..+ ..+-..+.|-.         ||.+    +.   ....+.+|.+.|.++.|
T Consensus       307 --~g----------------~~~q~f~~~-s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~  367 (524)
T KOG0273|consen  307 --TG----------------TVKQQFEFH-SAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW  367 (524)
T ss_pred             --Cc----------------eEEEeeeec-cCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence              22                222223332 22223334432         3322    11   11234569999999999


Q ss_pred             ccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCC---------CEEEEEEcCCceeeeeeeCCCCC--
Q 014302          245 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEG---------RMILLAFAGSLTLGSIHFASKPP--  312 (427)
Q Consensus       245 sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg---------~~l~~~~~~~~~i~~~~~~~~~~--  312 (427)
                      .|.|..|++++.|++++||.+....+ ..+..|...|..+.|+|.|         ..+++++.+ +++.+|++....+  
T Consensus       368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~d-stV~lwdv~~gv~i~  446 (524)
T KOG0273|consen  368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFD-STVKLWDVESGVPIH  446 (524)
T ss_pred             CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecC-CeEEEEEccCCceeE
Confidence            99999999999999999999876665 5566899999999999965         456665544 4888888877633  


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  392 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (427)
                      .+..              |..+|.+|+|+|+|+|||+   |+-|   |.|.+|++++++++....        .......
T Consensus       447 ~f~k--------------H~~pVysvafS~~g~ylAs---Gs~d---g~V~iws~~~~~l~~s~~--------~~~~Ife  498 (524)
T KOG0273|consen  447 TLMK--------------HQEPVYSVAFSPNGRYLAS---GSLD---GCVHIWSTKTGKLVKSYQ--------GTGGIFE  498 (524)
T ss_pred             eecc--------------CCCceEEEEecCCCcEEEe---cCCC---CeeEeccccchheeEeec--------CCCeEEE
Confidence            2333              4448899999999999999   8887   789999999999874321        1111334


Q ss_pred             EEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          393 FSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       393 ~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      +.|..   .|..|+++.++|.+++.+|.+
T Consensus       499 l~Wn~---~G~kl~~~~sd~~vcvldlr~  524 (524)
T KOG0273|consen  499 LCWNA---AGDKLGACASDGSVCVLDLRK  524 (524)
T ss_pred             EEEcC---CCCEEEEEecCCCceEEEecC
Confidence            55644   478999999999999999864

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.2e-30  Score=221.06  Aligned_cols=241  Identities=20%  Similarity=0.350  Sum_probs=173.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc-----CCCceEEEec-CCeEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-----NGGRSLSVGC-KGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-----~~~~~la~g~-~~~i~iw~~~~  174 (427)
                      -|.|++|+|||++||+|+.||+|++||..++.. .-....+|...|++++|.|     .. ++||+++ |+.++|||+..
T Consensus       159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~-r~las~skDg~vrIWd~~~  236 (480)
T KOG0271|consen  159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPC-RRLASSSKDGSVRIWDTKL  236 (480)
T ss_pred             EEEEEEECCCcchhhccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCc-cceecccCCCCEEEEEccC
Confidence            799999999999999999999999999877732 3345568999999999986     44 4666664 59999999972


Q ss_pred             CCCccccccC-----------cccccccccCCCCc------ceeEeehhcccCCCceeeeEeC-----------CCCCC-
Q 014302          175 PGNAASVRSG-----------AASFLGALSRGPGT------RWTLVDFLRSQNGEQITALSWG-----------PDGRF-  225 (427)
Q Consensus       175 ~~~~~~~~~~-----------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s-----------pdg~~-  225 (427)
                       +.......+           +..-+..-+++..-      +-.+...+++| ...|+.++.+           |.|+. 
T Consensus       237 -~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGH-ahwvN~lalsTdy~LRtgaf~~t~~~~  314 (480)
T KOG0271|consen  237 -GTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGH-AHWVNHLALSTDYVLRTGAFDHTGRKP  314 (480)
T ss_pred             -ceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhccc-chheeeeeccchhhhhccccccccccC
Confidence             211111111           11111111111111      11233455666 6667766655           33333 


Q ss_pred             ------------------------cccC------------------ceEEeccCCeEEEEEccCCCEEEEEecCCcEEEE
Q 014302          226 ------------------------PGLG------------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW  263 (427)
Q Consensus       226 ------------------------l~~~------------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iw  263 (427)
                                              +.++                  ..+.+|..-|..+.||||++++|+++.|++|++|
T Consensus       315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW  394 (480)
T KOG0271|consen  315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLW  394 (480)
T ss_pred             CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeee
Confidence                                    1111                  1234588889999999999999999999999999


Q ss_pred             EcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEE
Q 014302          264 ETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAW  340 (427)
Q Consensus       264 d~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~  340 (427)
                      |.++++. ..+.+|-..|..++|+.|.+.|+++ +.+.++++|++..++.  .+.||.              ..|.++.|
T Consensus       395 ~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~-SkDsTLKvw~V~tkKl~~DLpGh~--------------DEVf~vDw  459 (480)
T KOG0271|consen  395 DGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG-SKDSTLKVWDVRTKKLKQDLPGHA--------------DEVFAVDW  459 (480)
T ss_pred             eCCCcchhhhhhhccceeEEEEeccCccEEEEc-CCCceEEEEEeeeeeecccCCCCC--------------ceEEEEEe
Confidence            9999998 4556899999999999999988865 5666999999988743  333443              38899999


Q ss_pred             CCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          341 DASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       341 sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                      +|||+.+++   |+.|   ..+++|.
T Consensus       460 spDG~rV~s---ggkd---kv~~lw~  479 (480)
T KOG0271|consen  460 SPDGQRVAS---GGKD---KVLRLWR  479 (480)
T ss_pred             cCCCceeec---CCCc---eEEEeec
Confidence            999999998   7777   7799985

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-28  Score=202.87  Aligned_cols=274  Identities=15%  Similarity=0.218  Sum_probs=210.1

Q ss_pred             CCCC--ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCC---CcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302           97 LPEV--DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSG---KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~---~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw  170 (427)
                      +.+|  .|+.++..+.+. .|.+++.|.++.+|++....   ..+.....+|...|..+..++||.+.|+.+.|+.+++|
T Consensus        11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlW   90 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLW   90 (315)
T ss_pred             ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEE
Confidence            3445  799999988854 88899999999999998762   23456667899999999999999777777788999999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce--------------EEe--
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP--------------IRR--  234 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--------------~~~--  234 (427)
                      |+.         ++                ...+.+.+| ...|.++++++|.+.+.+|..              +..  
T Consensus        91 Dl~---------~g----------------~~t~~f~GH-~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~  144 (315)
T KOG0279|consen   91 DLA---------TG----------------ESTRRFVGH-TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE  144 (315)
T ss_pred             Eec---------CC----------------cEEEEEEec-CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec
Confidence            998         22                455667777 889999999999998776643              111  


Q ss_pred             --ccCCeEEEEEccC--CCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          235 --GFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       235 --~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                        +..-|.++.|+|+  ..+|++++.|++|++||+++.+. ..+.+|.+.++.+++||||...++| +.++.+..|++..
T Consensus       145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG-gkdg~~~LwdL~~  223 (315)
T KOG0279|consen  145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG-GKDGEAMLWDLNE  223 (315)
T ss_pred             CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC-CCCceEEEEEccC
Confidence              2467999999998  67888999999999999999887 4566999999999999999999876 5556899999988


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE-Eeeeeeee-CCCCC
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS-LSLIGFIR-GPGDN  387 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~-~~~~~~~~-~~~~~  387 (427)
                      ++.             ...+.+...|.+++|+|+.-+|+..   ..    ..|+|||+.++.++. +.+.+.-. .....
T Consensus       224 ~k~-------------lysl~a~~~v~sl~fspnrywL~~a---t~----~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~  283 (315)
T KOG0279|consen  224 GKN-------------LYSLEAFDIVNSLCFSPNRYWLCAA---TA----TSIKIWDLESKAVVEELKLDGIGPSSKAGD  283 (315)
T ss_pred             Cce-------------eEeccCCCeEeeEEecCCceeEeec---cC----CceEEEeccchhhhhhccccccccccccCC
Confidence            643             1223344489999999999888873   22    239999999987753 33322211 11223


Q ss_pred             CCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          388 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       388 ~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      +..+.++|.+   +|+.|-.|+.|+.|.+|.+.
T Consensus       284 ~~clslaws~---dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  284 PICLSLAWSA---DGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cEEEEEEEcC---CCcEEEeeecCCcEEEEEee
Confidence            3334455654   59999999999999998754

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.96  E-value=2.5e-27  Score=198.36  Aligned_cols=271  Identities=15%  Similarity=0.199  Sum_probs=207.8

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEe
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWA  171 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~  171 (427)
                      ++|.+|  +|.++.|++|.++|++++.||.+.|||.-+..+.  ....-....|+.++|+|.| +++|+|+ ++...||+
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~--haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV--HAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce--eEEecCceeEEEEEECCCC-CeEEecCcCceeEEEe
Confidence            567888  9999999999999999999999999998777332  2333455689999999999 7777775 47777999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------cC---ceEEec
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------LG---TPIRRG  235 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------~~---~~~~~~  235 (427)
                      +....+                   .+.....+.+.+| ...+.+..|-+|+.++.             ++   ..+.+|
T Consensus       126 ls~~d~-------------------~g~~~v~r~l~gH-tgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH  185 (343)
T KOG0286|consen  126 LSTRDA-------------------EGNVRVSRELAGH-TGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGH  185 (343)
T ss_pred             cccccc-------------------cccceeeeeecCc-cceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCC
Confidence            973211                   1122344556666 88888999988887743             22   235668


Q ss_pred             cCCeEEEEEcc-CCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--
Q 014302          236 FGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--  311 (427)
Q Consensus       236 ~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--  311 (427)
                      .+.|.+++++| +++.+++|+.|+..++||++.+.+ +.+.+|...|.+++|.|+|.-++++ +++++.+++++....  
T Consensus       186 ~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatG-SDD~tcRlyDlRaD~~~  264 (343)
T KOG0286|consen  186 TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATG-SDDATCRLYDLRADQEL  264 (343)
T ss_pred             cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeec-CCCceeEEEeecCCcEE
Confidence            99999999999 999999999999999999999988 5677999999999999999999876 566688888887642  


Q ss_pred             CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCce
Q 014302          312 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV  391 (427)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  391 (427)
                      ..+....            ...+|++++||..|++|..   |..|   .++.|||.-.++.+     |.+.|...  +..
T Consensus       265 a~ys~~~------------~~~gitSv~FS~SGRlLfa---gy~d---~~c~vWDtlk~e~v-----g~L~GHeN--RvS  319 (343)
T KOG0286|consen  265 AVYSHDS------------IICGITSVAFSKSGRLLFA---GYDD---FTCNVWDTLKGERV-----GVLAGHEN--RVS  319 (343)
T ss_pred             eeeccCc------------ccCCceeEEEcccccEEEe---eecC---CceeEeeccccceE-----EEeeccCC--eeE
Confidence            1222111            1238999999999999977   5555   45999998777765     44444443  356


Q ss_pred             eEEeccCCCCCceeEEEeeCceEEEE
Q 014302          392 AFSFHDKFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       392 ~~~f~~~~~~g~~l~v~~~~g~i~~~  417 (427)
                      |+...|+   |.-|+.|.=|..+.+|
T Consensus       320 cl~~s~D---G~av~TgSWDs~lriW  342 (343)
T KOG0286|consen  320 CLGVSPD---GMAVATGSWDSTLRIW  342 (343)
T ss_pred             EEEECCC---CcEEEecchhHheeec
Confidence            8888886   8788888778888776

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=5.1e-29  Score=218.04  Aligned_cols=220  Identities=15%  Similarity=0.221  Sum_probs=176.2

Q ss_pred             CCCC--ceeeeEEcCC--CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEe
Q 014302           97 LPEV--DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWA  171 (427)
Q Consensus        97 l~~~--~V~~l~~sp~--g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~  171 (427)
                      +.+|  .|.++.|+|.  +..||+++.||++++|+++..  .+.....+|...|..++|+|+| ++|+++ .|.+-++||
T Consensus       213 l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD  289 (459)
T KOG0272|consen  213 LRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWD  289 (459)
T ss_pred             EeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cchhhhhcchhhheeeeecCCC-ceeeecccccchhhcc
Confidence            4455  8999999998  459999999999999999886  5666677899999999999999 555555 568999999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------EEe
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------IRR  234 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~~  234 (427)
                      +.         ++                ..+-..++| ...|.+++|.|||.++++|..                 +.+
T Consensus       290 ~~---------tk----------------~ElL~QEGH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g  343 (459)
T KOG0272|consen  290 LE---------TK----------------SELLLQEGH-SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG  343 (459)
T ss_pred             cc---------cc----------------hhhHhhccc-ccccceeEecCCCceeeccCccchhheeecccCcEEEEecc
Confidence            98         22                223334555 889999999999999776632                 456


Q ss_pred             ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCC--
Q 014302          235 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASK--  310 (427)
Q Consensus       235 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~--  310 (427)
                      |...|..++|+|+|..||+|+.|++++|||++..+. ....+|..-|+.|+|+| .|.+|+++ +.++++++|.-.+.  
T Consensus       344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta-syD~t~kiWs~~~~~~  422 (459)
T KOG0272|consen  344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA-SYDNTVKIWSTRTWSP  422 (459)
T ss_pred             cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc-ccCcceeeecCCCccc
Confidence            899999999999999999999999999999998877 34459999999999999 56777765 55556666654442  


Q ss_pred             CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          311 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                      ...+.||..              .|.+++.++|++++++   .+-|   .++++|.
T Consensus       423 ~ksLaGHe~--------------kV~s~Dis~d~~~i~t---~s~D---RT~KLW~  458 (459)
T KOG0272|consen  423 LKSLAGHEG--------------KVISLDISPDSQAIAT---SSFD---RTIKLWR  458 (459)
T ss_pred             chhhcCCcc--------------ceEEEEeccCCceEEE---eccC---ceeeecc
Confidence            234555544              8899999999999999   5666   5699995

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=8.3e-28  Score=215.33  Aligned_cols=282  Identities=13%  Similarity=0.137  Sum_probs=197.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC---cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK---DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~  177 (427)
                      .|.++++.|.|-+|++|+.|.+|++||+.....   ....+.......|.+++|++.|..+|++.+....+|+|-+ +..
T Consensus       169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~  247 (641)
T KOG0772|consen  169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFE  247 (641)
T ss_pred             EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC-Cce
Confidence            799999999999999999999999999987622   1222223344579999999999999999988889999875 212


Q ss_pred             ccccccCcccccccccCCCCcceeEe--ehhcccCCCceeeeEeCCCCCC--cccC-----------------ceEEe--
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLV--DFLRSQNGEQITALSWGPDGRF--PGLG-----------------TPIRR--  234 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~spdg~~--l~~~-----------------~~~~~--  234 (427)
                      ...+..|              ..+..  ..-++| ...+++.+|+|+.+-  +.++                 .+++.  
T Consensus       248 ~~e~~KG--------------DQYI~Dm~nTKGH-ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~  312 (641)
T KOG0772|consen  248 IVEFSKG--------------DQYIRDMYNTKGH-IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP  312 (641)
T ss_pred             eeeeecc--------------chhhhhhhccCCc-eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence            1122222              11222  223344 778999999997653  2111                 11211  


Q ss_pred             ---ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc----cCCC--CeeEEEECCCCCEEEEEEcCCceeeee
Q 014302          235 ---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----STSG--FVTGATWDPEGRMILLAFAGSLTLGSI  305 (427)
Q Consensus       235 ---~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~--~v~~v~~spdg~~l~~~~~~~~~i~~~  305 (427)
                         ..-.++.++|+|||++||+|+.||+|.+|+..+.......    .|..  .|+++.||+||++|++-+. +..+++|
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-D~tLKvW  391 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-DDTLKVW  391 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC-CCceeee
Confidence               2246788999999999999999999999998766553221    6666  8999999999999997544 4499999


Q ss_pred             eeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCC
Q 014302          306 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG  385 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~  385 (427)
                      ++.+....+..         ...+...-.-+.++|||+.++|++..+.-.....|++++||..+...+...+.       
T Consensus       392 DLrq~kkpL~~---------~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i-------  455 (641)
T KOG0772|consen  392 DLRQFKKPLNV---------RTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI-------  455 (641)
T ss_pred             eccccccchhh---------hcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-------
Confidence            98875322211         00111111458899999999998854444444568899999887665533211       


Q ss_pred             CCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          386 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       386 ~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      ....++.++|||..++   +.+|..||.+++|-
T Consensus       456 ~~aSvv~~~WhpkLNQ---i~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  456 STASVVRCLWHPKLNQ---IFAGSGDGTAHVYY  485 (641)
T ss_pred             CCceEEEEeecchhhh---eeeecCCCceEEEE
Confidence            1334778999999776   88999999999873

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=3.5e-28  Score=228.46  Aligned_cols=194  Identities=17%  Similarity=0.302  Sum_probs=163.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      +|..++|+|+.++|++++.|+++|+|.+.+.  .....+.+|..+|+++.|+|.| .++|+++ |++.++|..+      
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~--s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d------  523 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTW--SCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTD------  523 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccc--eeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecc------
Confidence            8999999999999999999999999999987  6777888999999999999999 7777765 5889999988      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                                         ..++.+                          .+-+|...|.|++|+|+..|+++|+.|.+
T Consensus       524 -------------------~~~PlR--------------------------ifaghlsDV~cv~FHPNs~Y~aTGSsD~t  558 (707)
T KOG0263|consen  524 -------------------HNKPLR--------------------------IFAGHLSDVDCVSFHPNSNYVATGSSDRT  558 (707)
T ss_pred             -------------------cCCchh--------------------------hhcccccccceEEECCcccccccCCCCce
Confidence                               112333                          23346778999999999999999999999


Q ss_pred             EEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCcee
Q 014302          260 FYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIE  336 (427)
Q Consensus       260 v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~  336 (427)
                      ||+||+.++... .+.+|.++|.+++|||+|++|++|+ .++.|.+|++.....  .+.+|              .+.|.
T Consensus       559 VRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~~I~iWDl~~~~~v~~l~~H--------------t~ti~  623 (707)
T KOG0263|consen  559 VRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-EDGLIKIWDLANGSLVKQLKGH--------------TGTIY  623 (707)
T ss_pred             EEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-cCCcEEEEEcCCCcchhhhhcc--------------cCcee
Confidence            999999999884 5569999999999999999999875 455888888887522  33444              34899


Q ss_pred             EEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      +|.||.||..||+   ++.|   .+|++||+..
T Consensus       624 SlsFS~dg~vLas---gg~D---nsV~lWD~~~  650 (707)
T KOG0263|consen  624 SLSFSRDGNVLAS---GGAD---NSVRLWDLTK  650 (707)
T ss_pred             EEEEecCCCEEEe---cCCC---CeEEEEEchh
Confidence            9999999999999   6666   5699999864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1e-26  Score=192.69  Aligned_cols=266  Identities=18%  Similarity=0.348  Sum_probs=201.5

Q ss_pred             ceeeeEEcCC-CCEEEEEeCCCeEEEEEccCC-CCcce-eeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302          101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS-GKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~-~~~~~-~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~  176 (427)
                      .|..++|||- |..||+++.|+.|++|+...+ ..... .+-.+|...|++++|+|.| ++||+++ |.++.||.-.   
T Consensus        16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~---   91 (312)
T KOG0645|consen   16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDATVVIWKKE---   91 (312)
T ss_pred             cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccceEEEeecC---
Confidence            6899999998 899999999999999998853 22222 2334699999999999999 6777775 5889999765   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------------eEEecc
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------------PIRRGF  236 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------------~~~~~~  236 (427)
                                          ..++.++..+++| ...|.+++|+++|++|++.+                    ++..|.
T Consensus        92 --------------------~~efecv~~lEGH-EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Ht  150 (312)
T KOG0645|consen   92 --------------------DGEFECVATLEGH-ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHT  150 (312)
T ss_pred             --------------------CCceeEEeeeecc-ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence                                4577899999999 99999999999999988653                    356688


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCC---Cc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTW---TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  312 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~---~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~  312 (427)
                      +.|..+.|+|....|++++.|.+|++|+-...   .+ ..+.+|...|.+++|++.|..|+++ ++++++.+|.......
T Consensus       151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~-sdD~tv~Iw~~~~~~~  229 (312)
T KOG0645|consen  151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC-SDDGTVSIWRLYTDLS  229 (312)
T ss_pred             ccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe-cCCcceEeeeeccCcc
Confidence            99999999999999999999999999986632   23 3445888899999999999999875 6666888887664211


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE-EEeeeeeeeCCCCCCCce
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI-SLSLIGFIRGPGDNPKPV  391 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~  391 (427)
                                      ..++..+..++|.  ...||+   ++.|   +.|+||.-...+.- ......-..+..+. ...
T Consensus       230 ----------------~~~sr~~Y~v~W~--~~~IaS---~ggD---~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVN  284 (312)
T KOG0645|consen  230 ----------------GMHSRALYDVPWD--NGVIAS---GGGD---DAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVN  284 (312)
T ss_pred             ----------------hhcccceEeeeec--ccceEe---ccCC---CEEEEEEecCCCCCchHHHHHhhhccccc-ccc
Confidence                            1133478999999  446777   5556   66999987653211 11111112222222 366


Q ss_pred             eEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          392 AFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       392 ~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      +++|.|..  ..+|+.|..||.|.+|.+
T Consensus       285 sV~w~p~~--~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  285 SVQWNPKV--SNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             eEEEcCCC--CCceeecCCCceEEEEEe
Confidence            99999953  457888889999999976

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=3.3e-28  Score=212.09  Aligned_cols=264  Identities=17%  Similarity=0.293  Sum_probs=206.5

Q ss_pred             CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCC
Q 014302           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN  177 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~  177 (427)
                      .+.|..+.|.|+|++|++|+..|.+.||+...-  ....+...|...|+++.|++++ ..+.+|.. +.|++|+.+.   
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f--nFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnm---  169 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF--NFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNM---  169 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCcee--eHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccch---
Confidence            348999999999999999999999999987544  3445667899999999999999 66666655 8899998761   


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcc----------------cCceEEeccCCeE
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPG----------------LGTPIRRGFGGLS  240 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~----------------~~~~~~~~~~~v~  240 (427)
                                             ..+..+..++...|.+++|+| |.+++.                ...++++|.-.|.
T Consensus       170 -----------------------nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  170 -----------------------NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             -----------------------hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence                                   234556666568999999998 444422                1134678889999


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCcccc
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAH  317 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~  317 (427)
                      ++.|+|....|++++.|..|++||.+++.+.. ...|+..|..+.|+|++.+|++++.+. .++++++...  ...+.+|
T Consensus       227 svdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~-~~kv~DiR~mkEl~~~r~H  305 (464)
T KOG0284|consen  227 SVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ-SCKVFDIRTMKELFTYRGH  305 (464)
T ss_pred             eeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc-eEEEEehhHhHHHHHhhcc
Confidence            99999999999999999999999999999954 459999999999999999999875554 7777777742  1244455


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                      ..              .|+++.|+|-..-|.++  |+.|   |.|..|.+.....+     +.+.-+ ......+++|||
T Consensus       306 kk--------------dv~~~~WhP~~~~lfts--gg~D---gsvvh~~v~~~~p~-----~~i~~A-Hd~~iwsl~~hP  360 (464)
T KOG0284|consen  306 KK--------------DVTSLTWHPLNESLFTS--GGSD---GSVVHWVVGLEEPL-----GEIPPA-HDGEIWSLAYHP  360 (464)
T ss_pred             hh--------------hheeeccccccccceee--ccCC---CceEEEeccccccc-----cCCCcc-cccceeeeeccc
Confidence            54              78999999988777775  7777   77999998733322     222222 223366899999


Q ss_pred             CCCCCceeEEEeeCceEEEEecc
Q 014302          398 KFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       398 ~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      -   |-+||.|..|..+.||.=-
T Consensus       361 l---Ghil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  361 L---GHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             c---ceeEeecCCCcceeeeccC
Confidence            7   8899999999999998743

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.95  E-value=4.7e-27  Score=220.91  Aligned_cols=240  Identities=17%  Similarity=0.250  Sum_probs=192.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC-----------------------------CCcceeeccCCcCCeeEEEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-----------------------------GKDACILTSDSQRDVKVLEW  151 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~-----------------------------~~~~~~~~~~~~~~v~~l~~  151 (427)
                      .|+|..|++|+..||.|..|..|++|.+...                             .........+|.++|...+|
T Consensus       380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF  459 (707)
T KOG0263|consen  380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF  459 (707)
T ss_pred             cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence            7999999999999999999999999999741                             01122234689999999999


Q ss_pred             ccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce
Q 014302          152 RPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP  231 (427)
Q Consensus       152 sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~  231 (427)
                      +|+...+|.++.|.++++|.++                         .+.++.                          .
T Consensus       460 sPd~rfLlScSED~svRLWsl~-------------------------t~s~~V--------------------------~  488 (707)
T KOG0263|consen  460 SPDRRFLLSCSEDSSVRLWSLD-------------------------TWSCLV--------------------------I  488 (707)
T ss_pred             cccccceeeccCCcceeeeecc-------------------------cceeEE--------------------------E
Confidence            9999666666777999999998                         222332                          3


Q ss_pred             EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          232 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       232 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      +++|..+|+.+.|+|.|-|+|+++.|++-++|......+. .+.+|-+.|.++.|+|+..|+++| +.+.++++|++...
T Consensus       489 y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG-SsD~tVRlWDv~~G  567 (707)
T KOG0263|consen  489 YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG-SSDRTVRLWDVSTG  567 (707)
T ss_pred             ecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccC-CCCceEEEEEcCCC
Confidence            4557889999999999999999999999999999887774 455999999999999999999987 45558888888775


Q ss_pred             CC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCC
Q 014302          311 PP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP  388 (427)
Q Consensus       311 ~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~  388 (427)
                      ..  .+.|              |.++|.+|+|||+|++||+   |++|   |.|.+||+.++.++     ..+.+.  ..
T Consensus       568 ~~VRiF~G--------------H~~~V~al~~Sp~Gr~LaS---g~ed---~~I~iWDl~~~~~v-----~~l~~H--t~  620 (707)
T KOG0263|consen  568 NSVRIFTG--------------HKGPVTALAFSPCGRYLAS---GDED---GLIKIWDLANGSLV-----KQLKGH--TG  620 (707)
T ss_pred             cEEEEecC--------------CCCceEEEEEcCCCceEee---cccC---CcEEEEEcCCCcch-----hhhhcc--cC
Confidence            22  2333              4458899999999999999   8888   67999999998765     222233  33


Q ss_pred             CceeEEeccCCCCCceeEEEeeCceEEEEecccc
Q 014302          389 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  422 (427)
Q Consensus       389 ~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~  422 (427)
                      ....++|..+   |.+|++|..|-.|.+|++-..
T Consensus       621 ti~SlsFS~d---g~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  621 TIYSLSFSRD---GNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ceeEEEEecC---CCEEEecCCCCeEEEEEchhh
Confidence            3557888654   899999999999999998654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=202.96  Aligned_cols=274  Identities=15%  Similarity=0.211  Sum_probs=208.2

Q ss_pred             CCCCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEE
Q 014302           93 HVHLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI  169 (427)
Q Consensus        93 ~~~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~i  169 (427)
                      +.+++.+|  +|.-+.||++|++||+++.|.+..+|++..... +......+|..+|..+.||||..+++++|.+..+.+
T Consensus       216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l  295 (519)
T KOG0293|consen  216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL  295 (519)
T ss_pred             hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence            44555566  899999999999999999999999999877622 223445679999999999999988999999988999


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEe---------------
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRR---------------  234 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~---------------  234 (427)
                      ||++         +|                .+...+.......+.+.+|.|||..+.+|.+-+.               
T Consensus       296 wDv~---------tg----------------d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~  350 (519)
T KOG0293|consen  296 WDVD---------TG----------------DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE  350 (519)
T ss_pred             ccCC---------cc----------------hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc
Confidence            9998         33                1222233223567889999999988776655211               


Q ss_pred             --ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC-
Q 014302          235 --GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP-  311 (427)
Q Consensus       235 --~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~-  311 (427)
                        ....|.+++.++||+++++.+.|..|++|+..............++++++.|.||+++++.-... .+.+|++.+.. 
T Consensus       351 gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~q-ei~LWDl~e~~l  429 (519)
T KOG0293|consen  351 GVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQ-EIHLWDLEENKL  429 (519)
T ss_pred             ccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccC-eeEEeecchhhH
Confidence              12458999999999999988899999999998877766667788999999999999988765444 78888887642 


Q ss_pred             -CCccccccccccccceeeccCCceeEEEEC-CCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCC
Q 014302          312 -PSLDAHLLPVDLPDIVSLTGSQGIEKIAWD-ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK  389 (427)
Q Consensus       312 -~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s-p~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  389 (427)
                       ..+.||....            -|-.-||. .+..++|+   |++|   +.|+||+..++.++..     +.|..  ..
T Consensus       430 v~kY~Ghkq~~------------fiIrSCFgg~~~~fiaS---GSED---~kvyIWhr~sgkll~~-----LsGHs--~~  484 (519)
T KOG0293|consen  430 VRKYFGHKQGH------------FIIRSCFGGGNDKFIAS---GSED---SKVYIWHRISGKLLAV-----LSGHS--KT  484 (519)
T ss_pred             HHHhhcccccc------------eEEEeccCCCCcceEEe---cCCC---ceEEEEEccCCceeEe-----ecCCc--ce
Confidence             2444444311            23333566 45678888   9998   7799999999988733     22332  34


Q ss_pred             ceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       390 ~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ..|++|.|.  ....+|.+..||+|.+|-.
T Consensus       485 vNcVswNP~--~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  485 VNCVSWNPA--DPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             eeEEecCCC--CHHHhhccCCCCeEEEecC
Confidence            669999997  4567999999999999854

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=1.9e-26  Score=215.30  Aligned_cols=239  Identities=17%  Similarity=0.275  Sum_probs=184.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .+++++++|||+++|+|+.||.|+|||...+  -+......|...|+.+.|+..|..+|.++-||+|+.||+.       
T Consensus       352 ~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg--fC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk-------  422 (893)
T KOG0291|consen  352 RITSLAYSPDGQLIATGAEDGKVKVWNTQSG--FCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK-------  422 (893)
T ss_pred             ceeeEEECCCCcEEEeccCCCcEEEEeccCc--eEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec-------
Confidence            8999999999999999999999999998887  5677778899999999999999667777788999999998       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc------------------eEEeccCCeEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT------------------PIRRGFGGLSIL  242 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------------~~~~~~~~v~~~  242 (427)
                                        ++...+.+..+...+..|++..|.|.++..|.                  .+.+|.++|.++
T Consensus       423 ------------------RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l  484 (893)
T KOG0291|consen  423 ------------------RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL  484 (893)
T ss_pred             ------------------ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee
Confidence                              45566667666677778889888888754332                  256799999999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCcccccc
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLL  319 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~  319 (427)
                      +|+|+|..|++++.|++||+||+-.... .....+...+.+++|+|||+.|++++-++ .|..|+....  ...+++...
T Consensus       485 ~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldg-qItf~d~~~~~q~~~IdgrkD  563 (893)
T KOG0291|consen  485 SFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDG-QITFFDIKEAVQVGSIDGRKD  563 (893)
T ss_pred             EEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecc-eEEEEEhhhceeeccccchhh
Confidence            9999999999999999999999866533 33346778899999999999999887655 6666665543  112222211


Q ss_pred             ccc------cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          320 PVD------LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       320 ~~~------~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ...      .-....-..+...+.+++|+||.+|++   |+..   ..|++|++..+-++
T Consensus       564 ~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlA---gG~s---n~iCiY~v~~~vll  617 (893)
T KOG0291|consen  564 LSGGRKETDRITAENSAKGKTFTTICYSADGKCILA---GGES---NSICIYDVPEGVLL  617 (893)
T ss_pred             ccccccccceeehhhcccCCceEEEEEcCCCCEEEe---cCCc---ccEEEEECchhhee
Confidence            110      000111122347899999999999988   6666   34999999876543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=2.8e-27  Score=210.58  Aligned_cols=270  Identities=14%  Similarity=0.237  Sum_probs=206.0

Q ss_pred             CCCCCCCC--ceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEE
Q 014302           93 HVHLLPEV--DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI  169 (427)
Q Consensus        93 ~~~~l~~~--~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~i  169 (427)
                      .+..+.+|  .|+++.|.| .+.+|++++.|+.|+||++-.. ......+.+|..+|.+++|+.+|..+|.++.|+.+++
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-RRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-cceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            45566777  899999999 8889999999999999999874 3577788899999999999999999999999999999


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC-CcccCce-----------------
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-FPGLGTP-----------------  231 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~-----------------  231 (427)
                      ||++         +|                .+...+.  ....++|+.|+||+. .+..|..                 
T Consensus       285 wDtE---------TG----------------~~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe  337 (503)
T KOG0282|consen  285 WDTE---------TG----------------QVLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE  337 (503)
T ss_pred             eccc---------cc----------------eEEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH
Confidence            9998         44                3333333  456788999999983 3222211                 


Q ss_pred             EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          232 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       232 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      +..|-+.|..+.|-++|++++++++|++++||+.+..-.....  .......++..+|++.++++- +-++.+.++.+..
T Consensus       338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ-s~dN~i~ifs~~~  416 (503)
T KOG0282|consen  338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ-SMDNYIAIFSTVP  416 (503)
T ss_pred             HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh-ccCceEEEEeccc
Confidence            2237789999999999999999999999999999887765544  444566788899999999854 4454666665544


Q ss_pred             C-----CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302          310 K-----PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP  384 (427)
Q Consensus       310 ~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~  384 (427)
                      +     ...++||...            |--..+.|||||++|++   |+.|   |.+.+||.++..++..     +.+.
T Consensus       417 ~~r~nkkK~feGh~va------------Gys~~v~fSpDG~~l~S---Gdsd---G~v~~wdwkt~kl~~~-----lkah  473 (503)
T KOG0282|consen  417 PFRLNKKKRFEGHSVA------------GYSCQVDFSPDGRTLCS---GDSD---GKVNFWDWKTTKLVSK-----LKAH  473 (503)
T ss_pred             ccccCHhhhhcceecc------------CceeeEEEcCCCCeEEe---ecCC---ccEEEeechhhhhhhc-----cccC
Confidence            2     2244555442            35678899999999988   7777   7799999998877632     2222


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                        ..-.+.+.|||..  ...+|.|.-+|.|.+|+
T Consensus       474 --~~~ci~v~wHP~e--~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  474 --DQPCIGVDWHPVE--PSKVATCGWDGLIKIWD  503 (503)
T ss_pred             --CcceEEEEecCCC--cceeEecccCceeEecC
Confidence              1225578899974  34677777899999985

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.94  E-value=1.5e-24  Score=195.05  Aligned_cols=271  Identities=15%  Similarity=0.226  Sum_probs=176.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec---cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~  177 (427)
                      =|+|+.|+|||.++|+++.||++.+||=.++  +.....   .+|.+.|.+++|+||+.+++.++.|.+++|||+....-
T Consensus       192 FV~~VRysPDG~~Fat~gsDgki~iyDGktg--e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl  269 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL  269 (603)
T ss_pred             ceeeEEECCCCCeEEEecCCccEEEEcCCCc--cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence            5999999999999999999999999886665  333333   36999999999999998888889999999999972110


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC--------CCCCC--cc-----cCceEEeccCCeEEE
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--------PDGRF--PG-----LGTPIRRGFGGLSIL  242 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--------pdg~~--l~-----~~~~~~~~~~~v~~~  242 (427)
                                 ...+.-...            ...+...+-|.        -+|.+  +.     .-..+.+|...|+++
T Consensus       270 -----------v~t~~~~~~------------v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL  326 (603)
T KOG0318|consen  270 -----------VSTWPMGST------------VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL  326 (603)
T ss_pred             -----------EEEeecCCc------------hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence                       000000000            00111112221        11211  00     123467799999999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECC---------------------------------
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDP---------------------------------  287 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~sp---------------------------------  287 (427)
                      ..+|++++|++|+.||.|.-||..++...++  ..|...|.+++-+.                                 
T Consensus       327 tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~  406 (603)
T KOG0318|consen  327 TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGS  406 (603)
T ss_pred             EEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCC
Confidence            9999999999999999999999887765433  23444444444333                                 


Q ss_pred             -----------------------------------------------CCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302          288 -----------------------------------------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       288 -----------------------------------------------dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                                                                     +++.+++|+.++ .+.++.+....         
T Consensus       407 QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dg-kvhvysl~g~~---------  476 (603)
T KOG0318|consen  407 QPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDG-KVHVYSLSGDE---------  476 (603)
T ss_pred             CceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccc-eEEEEEecCCc---------
Confidence                                                           222222221111 22222222110         


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                       -.++.....+.+.|+.+++|||+.|||++   ...   +.|.+||+.+.... ...-+|     ...+..|++|.|+  
T Consensus       477 -l~ee~~~~~h~a~iT~vaySpd~~yla~~---Da~---rkvv~yd~~s~~~~-~~~w~F-----HtakI~~~aWsP~--  541 (603)
T KOG0318|consen  477 -LKEEAKLLEHRAAITDVAYSPDGAYLAAG---DAS---RKVVLYDVASREVK-TNRWAF-----HTAKINCVAWSPN--  541 (603)
T ss_pred             -ccceeeeecccCCceEEEECCCCcEEEEe---ccC---CcEEEEEcccCcee-cceeee-----eeeeEEEEEeCCC--
Confidence             01112334566799999999999999994   333   66999999988762 211122     3345779999998  


Q ss_pred             CCceeEEEeeCceEEEEecccc
Q 014302          401 QGPLLSVCWSSGFCCTYPLIFR  422 (427)
Q Consensus       401 ~g~~l~v~~~~g~i~~~~~~~~  422 (427)
                       ..++|.|.-|-.|.+|.+-=+
T Consensus       542 -n~~vATGSlDt~Viiysv~kP  562 (603)
T KOG0318|consen  542 -NKLVATGSLDTNVIIYSVKKP  562 (603)
T ss_pred             -ceEEEeccccceEEEEEccCh
Confidence             568999999999999986443

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.94  E-value=9.4e-25  Score=209.59  Aligned_cols=243  Identities=16%  Similarity=0.226  Sum_probs=184.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.++.|+|+|++|++++.|+.+++|+.............+|...|.+++|+|++..++.++.|.+++|||+..      
T Consensus       161 sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~------  234 (456)
T KOG0266|consen  161 SVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD------  234 (456)
T ss_pred             ceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccC------
Confidence            89999999999999999999999999996552113333367999999999999995444445569999999940      


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                                        ....+.                          .+++|...|++++|+|+|+++++|+.|++|
T Consensus       235 ------------------~~~~~~--------------------------~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tv  270 (456)
T KOG0266|consen  235 ------------------DGRNLK--------------------------TLKGHSTYVTSVAFSPDGNLLVSGSDDGTV  270 (456)
T ss_pred             ------------------CCeEEE--------------------------EecCCCCceEEEEecCCCCEEEEecCCCcE
Confidence                              112222                          445678889999999999999999999999


Q ss_pred             EEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC----CccccccccccccceeeccCCce
Q 014302          261 YLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP----SLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       261 ~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                      +|||++++++ ..+..|...|.+++|+++|++|+++ +.++.+++|++.....    .+.++..           .. .+
T Consensus       271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~-----------~~-~~  337 (456)
T KOG0266|consen  271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAEN-----------SA-PV  337 (456)
T ss_pred             EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeecccCCCC-----------CC-ce
Confidence            9999999887 4555999999999999999999987 5577888888887631    1111111           11 57


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC-CCCCceeEEEeeCceE
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK-FKQGPLLSVCWSSGFC  414 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~g~~l~v~~~~g~i  414 (427)
                      +.+.|+|++++|++   +..|   +++++||+..+.+...     ..+....  ..|+ |.+. +..+..+.+|..++.|
T Consensus       338 ~~~~fsp~~~~ll~---~~~d---~~~~~w~l~~~~~~~~-----~~~~~~~--~~~~-~~~~~~~~~~~i~sg~~d~~v  403 (456)
T KOG0266|consen  338 TSVQFSPNGKYLLS---ASLD---RTLKLWDLRSGKSVGT-----YTGHSNL--VRCI-FSPTLSTGGKLIYSGSEDGSV  403 (456)
T ss_pred             eEEEECCCCcEEEE---ecCC---CeEEEEEccCCcceee-----ecccCCc--ceeE-ecccccCCCCeEEEEeCCceE
Confidence            99999999999999   5666   5699999998776522     2222111  1232 3332 4468899999999999


Q ss_pred             EEEecc
Q 014302          415 CTYPLI  420 (427)
Q Consensus       415 ~~~~~~  420 (427)
                      ++|++-
T Consensus       404 ~~~~~~  409 (456)
T KOG0266|consen  404 YVWDSS  409 (456)
T ss_pred             EEEeCC
Confidence            999964

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.94  E-value=5.3e-25  Score=183.35  Aligned_cols=236  Identities=16%  Similarity=0.189  Sum_probs=170.7

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~  172 (427)
                      +.+.+|  .|..+..++||++.++++.|+++++||+..+  +......+|...|.+++|+||..+++..+.|+++++|++
T Consensus        57 r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   57 RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             eeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence            334444  8999999999999999999999999999988  666777899999999999999944444445599999998


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC--CCcccC-----------------ceEE
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RFPGLG-----------------TPIR  233 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~l~~~-----------------~~~~  233 (427)
                      -                       +..  .....+..+..-|+|+.|+|+.  -++..+                 ..+.
T Consensus       135 ~-----------------------g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~  189 (315)
T KOG0279|consen  135 L-----------------------GVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI  189 (315)
T ss_pred             c-----------------------ccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence            6                       111  1111122227789999999985  222211                 1234


Q ss_pred             eccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302          234 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  313 (427)
Q Consensus       234 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~  313 (427)
                      +|.+.++.+++||||..+++|+.||.+.+||++.++......+...|.+++|+|+...|+.+ .+. .|++|++..+...
T Consensus       190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a-t~~-sIkIwdl~~~~~v  267 (315)
T KOG0279|consen  190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA-TAT-SIKIWDLESKAVV  267 (315)
T ss_pred             cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec-cCC-ceEEEeccchhhh
Confidence            57888999999999999999999999999999999997777899999999999976666544 333 5788887775321


Q ss_pred             ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      .+-.   .+..........-...+++|++||..|..   |-.|   +.|++|.+.
T Consensus       268 ~~l~---~d~~g~s~~~~~~~clslaws~dG~tLf~---g~td---~~irv~qv~  313 (315)
T KOG0279|consen  268 EELK---LDGIGPSSKAGDPICLSLAWSADGQTLFA---GYTD---NVIRVWQVA  313 (315)
T ss_pred             hhcc---ccccccccccCCcEEEEEEEcCCCcEEEe---eecC---CcEEEEEee
Confidence            1000   00000000011114568899999999977   5555   559999874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.94  E-value=5.8e-25  Score=188.93  Aligned_cols=270  Identities=14%  Similarity=0.136  Sum_probs=208.1

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~  172 (427)
                      .++.+|  .|+|+++.|.++++++|+.|++++|||+.++  +......+|...|..+++|+-..+++++|.++.|+.||+
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            345566  8999999999999999999999999999998  667777889999999999999988888888899999999


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEec
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRG  235 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~  235 (427)
                      .                         .-+.++.+.+| ...|.+++.+|.-..+.++.                 .+.+|
T Consensus       223 e-------------------------~nkvIR~YhGH-lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH  276 (460)
T KOG0285|consen  223 E-------------------------YNKVIRHYHGH-LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH  276 (460)
T ss_pred             h-------------------------hhhhHHHhccc-cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC
Confidence            8                         22456667777 88999999999766655442                 25668


Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--C
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--P  312 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~  312 (427)
                      ...|..+.+.|....+++|+.|++|++||++.++.. ....|+..+.+++.+|....+++++ .+ .+..|.+..+.  .
T Consensus       277 ~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-~d-nik~w~~p~g~f~~  354 (460)
T KOG0285|consen  277 TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-PD-NIKQWKLPEGEFLQ  354 (460)
T ss_pred             CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-Cc-cceeccCCccchhh
Confidence            899999999999999999999999999999998874 4558999999999999888777654 33 57777777652  1


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC-CCCCCce
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-GDNPKPV  391 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~  391 (427)
                      .+.+|..              -|+.++...||- +++   |++.   |.|.+||.+++..++....-.--|. .......
T Consensus       355 nlsgh~~--------------iintl~~nsD~v-~~~---G~dn---g~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~  413 (460)
T KOG0285|consen  355 NLSGHNA--------------IINTLSVNSDGV-LVS---GGDN---GSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIF  413 (460)
T ss_pred             ccccccc--------------eeeeeeeccCce-EEE---cCCc---eEEEEEecCcCcccccccccccCCcccccccee
Confidence            2333333              678999888874 444   5554   8899999999887644311110111 1223345


Q ss_pred             eEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          392 AFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       392 ~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      +.+|..   .|.-|..|-.|-.|.+|-
T Consensus       414 as~fDk---tg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  414 ASCFDK---TGSRLITGEADKTIKMYK  437 (460)
T ss_pred             EEeecc---cCceEEeccCCcceEEEe
Confidence            666754   377788888999999984

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=3.7e-24  Score=193.49  Aligned_cols=259  Identities=19%  Similarity=0.316  Sum_probs=192.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++++.|+.+++|++...  ........|...+..+.|+|++..+++++.++.+.+|++...     
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~-----   83 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETG--ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG-----   83 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeCC--CcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc-----
Confidence            7999999999999999999999999999876  344455678888999999999954555555799999999710     


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~  243 (427)
                                          .....+..+ ...+.++.|+++++++..+.                 .+..|...+.+++
T Consensus        84 --------------------~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~  142 (289)
T cd00200          84 --------------------ECVRTLTGH-TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVA  142 (289)
T ss_pred             --------------------cceEEEecc-CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEE
Confidence                                122223333 55788999999876644322                 1223667799999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLP  320 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~  320 (427)
                      |+|+++++++++.++.|++||+++.+.. .+..+...+.+++|+|+++.+++++. ++.+.+|++.....  .+.     
T Consensus       143 ~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~-----  216 (289)
T cd00200         143 FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLR-----  216 (289)
T ss_pred             EcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchh-----
Confidence            9999999998888999999999877663 34477789999999999988888765 55788887765311  111     


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                               .+...+.+++|+|++.++++   ++.+   +.|++|++.++......     ..  ......+++|.|+  
T Consensus       217 ---------~~~~~i~~~~~~~~~~~~~~---~~~~---~~i~i~~~~~~~~~~~~-----~~--~~~~i~~~~~~~~--  272 (289)
T cd00200         217 ---------GHENGVNSVAFSPDGYLLAS---GSED---GTIRVWDLRTGECVQTL-----SG--HTNSVTSLAWSPD--  272 (289)
T ss_pred             ---------hcCCceEEEEEcCCCcEEEE---EcCC---CcEEEEEcCCceeEEEc-----cc--cCCcEEEEEECCC--
Confidence                     22337899999999888877   4434   66999999876554222     12  1223668889886  


Q ss_pred             CCceeEEEeeCceEEEEe
Q 014302          401 QGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       401 ~g~~l~v~~~~g~i~~~~  418 (427)
                       +..|+++..+|.|.+|+
T Consensus       273 -~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         273 -GKRLASGSADGTIRIWD  289 (289)
T ss_pred             -CCEEEEecCCCeEEecC
Confidence             67889999999999984

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.4e-25  Score=196.21  Aligned_cols=278  Identities=11%  Similarity=0.117  Sum_probs=199.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~  179 (427)
                      .|+++.|||..++|++++.|++++||.++......+...+-...+|.+..|.|+|...+++++. .....||+..     
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~-----  289 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET-----  289 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc-----
Confidence            8999999999999999999999999999887444555445566789999999999746655555 7788999971     


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce--------------EE--eccCCeEEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP--------------IR--RGFGGLSILK  243 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--------------~~--~~~~~v~~~~  243 (427)
                          .              +...+..+.+.....+..+..+|++++++....              +.  ...+.+..++
T Consensus       290 ----a--------------k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~  351 (514)
T KOG2055|consen  290 ----A--------------KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFT  351 (514)
T ss_pred             ----c--------------ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEE
Confidence                1              222233333443455667888888887552211              10  1246788999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCccc-cc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc-cccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL-DAHLLP  320 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~~  320 (427)
                      |+.||+.|++++.+|.|++||++...+.. +. ...-.-+++|.|++|++||+|+..+    ++++++....+ .....|
T Consensus       352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G----iVNIYd~~s~~~s~~PkP  427 (514)
T KOG2055|consen  352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG----IVNIYDGNSCFASTNPKP  427 (514)
T ss_pred             EecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc----eEEEeccchhhccCCCCc
Confidence            99999999988889999999999998744 33 3333456888999999999876555    66666642222 122222


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                      +    .........|++|.|++|++.||.|+....    ..+++-.+.+..++...|..  +.+..  .+.|++|.|.  
T Consensus       428 i----k~~dNLtt~Itsl~Fn~d~qiLAiaS~~~k----nalrLVHvPS~TVFsNfP~~--n~~vg--~vtc~aFSP~--  493 (514)
T KOG2055|consen  428 I----KTVDNLTTAITSLQFNHDAQILAIASRVKK----NALRLVHVPSCTVFSNFPTS--NTKVG--HVTCMAFSPN--  493 (514)
T ss_pred             h----hhhhhhheeeeeeeeCcchhhhhhhhhccc----cceEEEeccceeeeccCCCC--CCccc--ceEEEEecCC--
Confidence            2    111112238999999999999999765554    35999888887777665533  22233  3669999997  


Q ss_pred             CCceeEEEeeCceEEEEecc
Q 014302          401 QGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       401 ~g~~l~v~~~~g~i~~~~~~  420 (427)
                       +..||+|...|++.+|-|-
T Consensus       494 -sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  494 -SGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             -CceEEeecCCCceeeEeec
Confidence             6689999999999999874

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.94  E-value=1.8e-24  Score=177.36  Aligned_cols=224  Identities=15%  Similarity=0.223  Sum_probs=175.0

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      ..|+.+...|++..||+++ ...||+||+++....+...+.+|.+.|+++.|.-+| +.+.+|++ |+++|||+..    
T Consensus        41 sqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~----  114 (311)
T KOG0315|consen   41 SQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRS----  114 (311)
T ss_pred             cceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccC----
Confidence            3799999999999999884 678999999998666788888999999999999999 66666655 9999999981    


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc------------------eEEeccCCeE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT------------------PIRRGFGGLS  240 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------------~~~~~~~~v~  240 (427)
                                           ..+.+.++  ...+|+++..+|+...|..+.                  .++.....+.
T Consensus       115 ---------------------~~~qR~~~--~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~  171 (311)
T KOG0315|consen  115 ---------------------LSCQRNYQ--HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ  171 (311)
T ss_pred             ---------------------cccchhcc--CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee
Confidence                                 12222222  358889999998654433221                  1233346789


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCc-------cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-C-
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-P-  311 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~-  311 (427)
                      ++...|||.+|+.+...|..++|++-....       .++..|.+.+..+.+|||+++|++++++. ++++|+..+. + 
T Consensus       172 sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk-tv~iwn~~~~~kl  250 (311)
T KOG0315|consen  172 SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK-TVKIWNTDDFFKL  250 (311)
T ss_pred             eEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc-eEEEEecCCceee
Confidence            999999999999999999999999876543       23448999999999999999999875555 8888887764 1 


Q ss_pred             -CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          312 -PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       312 -~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                       ..+++              +...++.++||.||+||++   ++.|   +.+++|++..++.+
T Consensus       251 e~~l~g--------------h~rWvWdc~FS~dg~YlvT---assd---~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  251 ELVLTG--------------HQRWVWDCAFSADGEYLVT---ASSD---HTARLWDLSAGKEV  293 (311)
T ss_pred             EEEeec--------------CCceEEeeeeccCccEEEe---cCCC---CceeecccccCcee
Confidence             11222              2238999999999999988   7777   67999999988765

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.93  E-value=6.5e-26  Score=197.83  Aligned_cols=223  Identities=16%  Similarity=0.286  Sum_probs=175.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|+++.|+++|.++++|..+|.|++|+.+-.  ........|...|++++|||+...++.++.|++|+|||...+     
T Consensus       140 ~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn--nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~-----  212 (464)
T KOG0284|consen  140 PVRTMKWSHNGTWMISGDKGGMIKYWQPNMN--NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP-----  212 (464)
T ss_pred             cceeEEEccCCCEEEEcCCCceEEecccchh--hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC-----
Confidence            8999999999999999999999999987765  344444456689999999998866777777799999998722     


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------EEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------IRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~v~~~~  243 (427)
                                          +....+++| .-.|.++.|+|...+++++..                 +..|...|..+.
T Consensus       213 --------------------kee~vL~GH-gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~  271 (464)
T KOG0284|consen  213 --------------------KEERVLRGH-GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK  271 (464)
T ss_pred             --------------------chhheeccC-CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE
Confidence                                233456666 778999999998877765532                 334778899999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  322 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  322 (427)
                      |+|++++|++++.|..++++|+++.+. ..+.+|+..+.++.|+|-..-|++.+..++.+..|.+.-..+..        
T Consensus       272 f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~--------  343 (464)
T KOG0284|consen  272 FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG--------  343 (464)
T ss_pred             EcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc--------
Confidence            999999999999999999999996655 55568999999999999887777766777677777766321100        


Q ss_pred             cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                         .....+.+.|++|+|+|-|..||+   |++|   .++++|.-.
T Consensus       344 ---~i~~AHd~~iwsl~~hPlGhil~t---gsnd---~t~rfw~r~  380 (464)
T KOG0284|consen  344 ---EIPPAHDGEIWSLAYHPLGHILAT---GSND---RTVRFWTRN  380 (464)
T ss_pred             ---CCCcccccceeeeeccccceeEee---cCCC---cceeeeccC
Confidence               011224458999999999999988   8888   569999753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.93  E-value=3.7e-24  Score=180.11  Aligned_cols=262  Identities=16%  Similarity=0.267  Sum_probs=190.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|+.+.|+|+|.+||+|+.|..|.+|++..... -.-...+|.+.|+.+.|.+|+..++.+|.|.++..||++       
T Consensus        49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce-N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-------  120 (338)
T KOG0265|consen   49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE-NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-------  120 (338)
T ss_pred             eEEEEEECCCCCeEeecCCcceEEEEecccccc-ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc-------
Confidence            899999999999999999999999999766522 223335899999999999999888888999999999998       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEe-----------CCCCCCc----ccCceEEe--ccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-----------GPDGRFP----GLGTPIRR--GFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----------spdg~~l----~~~~~~~~--~~~~v~~~~  243 (427)
                        +|                ++....+.| ...|..+.-           ++|+..-    .....++.  ....++++.
T Consensus       121 --tG----------------~~~rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~  181 (338)
T KOG0265|consen  121 --TG----------------KRIRKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVG  181 (338)
T ss_pred             --cc----------------eeeehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEE
Confidence              32                333334444 344443332           2222210    00001111  134688999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC------ccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS------LDA  316 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~------~~~  316 (427)
                      |..++..+.+|+-|+.|++||++.... ....+|...|+.+..+|+|.++++-+ -+.++++|++....+.      +.+
T Consensus       182 f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns-Md~tvrvwd~rp~~p~~R~v~if~g  260 (338)
T KOG0265|consen  182 FKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS-MDNTVRVWDVRPFAPSQRCVKIFQG  260 (338)
T ss_pred             ecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc-ccceEEEEEecccCCCCceEEEeec
Confidence            999999999999999999999998887 45559999999999999999998654 4448888877664221      112


Q ss_pred             cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302          317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  396 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  396 (427)
                      |....          .-....++|+|+++++..   |+.|   ..+++||..+..++-..       ++......+++||
T Consensus       261 ~~hnf----------eknlL~cswsp~~~~i~a---gs~d---r~vyvwd~~~r~~lykl-------pGh~gsvn~~~Fh  317 (338)
T KOG0265|consen  261 HIHNF----------EKNLLKCSWSPNGTKITA---GSAD---RFVYVWDTTSRRILYKL-------PGHYGSVNEVDFH  317 (338)
T ss_pred             chhhh----------hhhcceeeccCCCCcccc---cccc---ceEEEeecccccEEEEc-------CCcceeEEEeeec
Confidence            21111          114567899999999988   7888   45999999886665222       3444557799999


Q ss_pred             cCCCCCceeEEEeeCceEEE
Q 014302          397 DKFKQGPLLSVCWSSGFCCT  416 (427)
Q Consensus       397 ~~~~~g~~l~v~~~~g~i~~  416 (427)
                      |.   ..+|..|.+|-+|.+
T Consensus       318 p~---e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  318 PT---EPIILSCSSDKTIYL  334 (338)
T ss_pred             CC---CcEEEEeccCceeEe
Confidence            97   678888889988865

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=1.7e-23  Score=195.67  Aligned_cols=259  Identities=17%  Similarity=0.324  Sum_probs=199.2

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC--CeEEEEeccCCCC
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGN  177 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~--~~i~iw~~~~~~~  177 (427)
                      ..|++.+||+.-..||+|-.+|...+|++..-  .......-.+..|..++|+..| ..||.|+.  +.+.||++.    
T Consensus       266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f--~lih~LSis~~~I~t~~~N~tG-DWiA~g~~klgQLlVweWq----  338 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF--NLIHSLSISDQKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQ----  338 (893)
T ss_pred             cceeeeeccCCceEEEEEecCCeeEEEecCCc--eEEEEeecccceeeEEEecccC-CEEEEcCCccceEEEEEee----
Confidence            47899999999999999999999999988766  3333333345679999999999 67777766  689999997    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------EEeccCCeE
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------IRRGFGGLS  240 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~v~  240 (427)
                           .               +.+.+ ..++| ...+++++++|||+++++|..                 +..|..+|+
T Consensus       339 -----s---------------EsYVl-KQQgH-~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt  396 (893)
T KOG0291|consen  339 -----S---------------ESYVL-KQQGH-SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT  396 (893)
T ss_pred             -----c---------------cceee-ecccc-ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE
Confidence                 1               11222 24445 889999999999999887632                 445889999


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccc
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDA  316 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~  316 (427)
                      .+.|+..|+.+++++-||+||.||+....+-+ +. .......+++-.|.|..+..|+.+.=.|++|.+...+.  .+.|
T Consensus       397 ~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG  476 (893)
T KOG0291|consen  397 AVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG  476 (893)
T ss_pred             EEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC
Confidence            99999999999999999999999998877733 33 33344567777888988877665555677777776522  3444


Q ss_pred             cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC--ceEEEeeeeeeeCCCCCCCceeEE
Q 014302          317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFS  394 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  394 (427)
                      |..              +|.+++|+|+|..||+   ++.|   .+|++||+-..  ....+.         ....++.++
T Consensus       477 HEg--------------PVs~l~f~~~~~~LaS---~SWD---kTVRiW~if~s~~~vEtl~---------i~sdvl~vs  527 (893)
T KOG0291|consen  477 HEG--------------PVSGLSFSPDGSLLAS---GSWD---KTVRIWDIFSSSGTVETLE---------IRSDVLAVS  527 (893)
T ss_pred             CCC--------------cceeeEEccccCeEEe---cccc---ceEEEEEeeccCceeeeEe---------eccceeEEE
Confidence            444              7899999999999999   8888   77999998543  222111         112367899


Q ss_pred             eccCCCCCceeEEEeeCceEEEEec
Q 014302          395 FHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       395 f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      |.|+   |.-|||++.||.|.+|+.
T Consensus       528 frPd---G~elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  528 FRPD---GKELAVATLDGQITFFDI  549 (893)
T ss_pred             EcCC---CCeEEEEEecceEEEEEh
Confidence            9997   788999999999999985

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.93  E-value=7.1e-24  Score=173.87  Aligned_cols=261  Identities=15%  Similarity=0.140  Sum_probs=195.1

Q ss_pred             EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccc
Q 014302          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGAL  192 (427)
Q Consensus       113 ~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~  192 (427)
                      +|++++.|.+||+|...++  ............|+.+...||+ +.||+++...|++||++         ++        
T Consensus        12 iLvsA~YDhTIRfWqa~tG--~C~rTiqh~dsqVNrLeiTpdk-~~LAaa~~qhvRlyD~~---------S~--------   71 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTG--ICSRTIQHPDSQVNRLEITPDK-KDLAAAGNQHVRLYDLN---------SN--------   71 (311)
T ss_pred             EEEeccCcceeeeeehhcC--eEEEEEecCccceeeEEEcCCc-chhhhccCCeeEEEEcc---------CC--------
Confidence            8999999999999999888  4444444456789999999999 88999999999999998         11        


Q ss_pred             cCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce----------------EEeccCCeEEEEEccCCCEEEEEec
Q 014302          193 SRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP----------------IRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~----------------~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                            .-.++..+.+| ...|+.+.|..||+++.+|..                .-.+..+|.++..+|+...|++|..
T Consensus        72 ------np~Pv~t~e~h-~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq  144 (311)
T KOG0315|consen   72 ------NPNPVATFEGH-TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ  144 (311)
T ss_pred             ------CCCceeEEecc-CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC
Confidence                  11245567776 788999999999999776643                1226689999999999999999999


Q ss_pred             CCcEEEEEcCCCCcc--ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          257 DGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       257 dg~v~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      +|.|++||+....+.  ........|.++...|||++|+.+ .+.|..++|++-...  ...++.|+    .+...+.+.
T Consensus       145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~-nnkG~cyvW~l~~~~--~~s~l~P~----~k~~ah~~~  217 (311)
T KOG0315|consen  145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA-NNKGNCYVWRLLNHQ--TASELEPV----HKFQAHNGH  217 (311)
T ss_pred             CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe-cCCccEEEEEccCCC--ccccceEh----hheecccce
Confidence            999999999988763  333666889999999999999855 666699999987732  11222222    223345668


Q ss_pred             eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302          335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC  414 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i  414 (427)
                      |..+.+|||+++||+|   +.|   .+++||+..+--..++...    +..  .=.-.++|..+   |.-|-.|.+|+..
T Consensus       218 il~C~lSPd~k~lat~---ssd---ktv~iwn~~~~~kle~~l~----gh~--rWvWdc~FS~d---g~YlvTassd~~~  282 (311)
T KOG0315|consen  218 ILRCLLSPDVKYLATC---SSD---KTVKIWNTDDFFKLELVLT----GHQ--RWVWDCAFSAD---GEYLVTASSDHTA  282 (311)
T ss_pred             EEEEEECCCCcEEEee---cCC---ceEEEEecCCceeeEEEee----cCC--ceEEeeeeccC---ccEEEecCCCCce
Confidence            9999999999999995   445   6799999987622222211    111  11224556543   6668888899999


Q ss_pred             EEEecccc
Q 014302          415 CTYPLIFR  422 (427)
Q Consensus       415 ~~~~~~~~  422 (427)
                      .+|++.-.
T Consensus       283 rlW~~~~~  290 (311)
T KOG0315|consen  283 RLWDLSAG  290 (311)
T ss_pred             eecccccC
Confidence            99997543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=1e-24  Score=185.14  Aligned_cols=265  Identities=14%  Similarity=0.166  Sum_probs=199.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcc------eeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA------CILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~------~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~  173 (427)
                      .+-|..|||||++|++|+.||-|.||++.++....      .....-+...|.|+.||.|. ..||+|+. |.|++|.+.
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~  293 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIE  293 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEEEEEe
Confidence            68899999999999999999999999998872111      11112377899999999998 78888765 999999998


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-----------------ceEEecc
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-----------------TPIRRGF  236 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-----------------~~~~~~~  236 (427)
                               +|                .|++.++..+...|+++.|+.|+..+.++                 ..+++|.
T Consensus       294 ---------tG----------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHs  348 (508)
T KOG0275|consen  294 ---------TG----------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHS  348 (508)
T ss_pred             ---------cc----------------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcc
Confidence                     44                56676775558889999999998764432                 2356788


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-  312 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-  312 (427)
                      .-|....|.+||.++++++.||+|++|+.++.+|.. +.  +....|.++..-|.+.--+..++..++++++++..... 
T Consensus       349 Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr  428 (508)
T KOG0275|consen  349 SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR  428 (508)
T ss_pred             ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe
Confidence            889999999999999999999999999999999843 33  66778899988887654444567777888888876511 


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  392 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (427)
                      .+.         .  ....++..-+.+.||.|.|+.+   .++|   +.++.|.+.++.+....+.       ....++.
T Consensus       429 sfs---------S--GkREgGdFi~~~lSpkGewiYc---igED---~vlYCF~~~sG~LE~tl~V-------hEkdvIG  484 (508)
T KOG0275|consen  429 SFS---------S--GKREGGDFINAILSPKGEWIYC---IGED---GVLYCFSVLSGKLERTLPV-------HEKDVIG  484 (508)
T ss_pred             eec---------c--CCccCCceEEEEecCCCcEEEE---EccC---cEEEEEEeecCceeeeeec-------ccccccc
Confidence            110         0  0112345567789999999977   6677   7899999999887543321       2223677


Q ss_pred             EEeccCCCCCceeEEEeeCceEEEEe
Q 014302          393 FSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       393 ~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      ++.||.   ..+||.=..||.+.+|.
T Consensus       485 l~HHPH---qNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  485 LTHHPH---QNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccCcc---cchhhhhcccchhhhcC
Confidence            888986   45777777888888773

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.3e-23  Score=174.44  Aligned_cols=225  Identities=19%  Similarity=0.363  Sum_probs=173.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~  179 (427)
                      .|++++|+|.|++||+|+.|.++.||.-.....+......+|...|.+++||++| .+||++++ +.|-||.++      
T Consensus        63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~d------  135 (312)
T KOG0645|consen   63 SVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEID------  135 (312)
T ss_pred             eeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEec------
Confidence            8999999999999999999999999987766666777888999999999999999 78887765 889999987      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------------eEEeccCCe
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------------PIRRGFGGL  239 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------------~~~~~~~~v  239 (427)
                                      ...++.+...+..| ...|..+.|+|...+|.+++                    .+..|..-|
T Consensus       136 ----------------eddEfec~aVL~~H-tqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TV  198 (312)
T KOG0645|consen  136 ----------------EDDEFECIAVLQEH-TQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTV  198 (312)
T ss_pred             ----------------CCCcEEEEeeeccc-cccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceE
Confidence                            23477888888888 88999999999877766442                    244567789


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--CCcccc
Q 014302          240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAH  317 (427)
Q Consensus       240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~~~~~~  317 (427)
                      ++++|++.|..|++++.|++|+||...+.   ....|...+..+.|.  .-.|++++.++ .|.++.-.+.+  +.+   
T Consensus       199 W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~-~i~lf~~s~~~d~p~~---  269 (312)
T KOG0645|consen  199 WSLAFDNIGSRLVSCSDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDD-AIRLFKESDSPDEPSW---  269 (312)
T ss_pred             EEEEecCCCceEEEecCCcceEeeeeccC---cchhcccceEeeeec--ccceEeccCCC-EEEEEEecCCCCCchH---
Confidence            99999999999999999999999986521   122577889999998  34566665555 66665555421  111   


Q ss_pred             ccccccccceeeccCCceeEEEECCC-CCEEEEEEecCCCcceeEEEEEEec
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~-g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                          .+-......|...|+++.|+|. ..+|++   +++|   |.|++|.+.
T Consensus       270 ----~l~~~~~~aHe~dVNsV~w~p~~~~~L~s---~~DD---G~v~~W~l~  311 (312)
T KOG0645|consen  270 ----NLLAKKEGAHEVDVNSVQWNPKVSNRLAS---GGDD---GIVNFWELE  311 (312)
T ss_pred             ----HHHHhhhcccccccceEEEcCCCCCceee---cCCC---ceEEEEEec
Confidence                0001112234558999999995 567777   7777   889999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.93  E-value=8.4e-24  Score=177.32  Aligned_cols=218  Identities=14%  Similarity=0.180  Sum_probs=176.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC----CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      .|..++|+|.|+++|.|+.|....||++...    .........+|.+.+.++.|-+|+ ++|.+++|.+..+||++   
T Consensus        99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie---  174 (343)
T KOG0286|consen   99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE---  174 (343)
T ss_pred             eEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc---
Confidence            7899999999999999999999999999854    112334467899999999999987 88888899999999998   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccC-----------------ceEEeccCC
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLG-----------------TPIRRGFGG  238 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~-----------------~~~~~~~~~  238 (427)
                            ++                +.++.+.+| ...|.+++++| +++...+|                 +.+.+|...
T Consensus       175 ------~g----------------~~~~~f~GH-~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD  231 (343)
T KOG0286|consen  175 ------TG----------------QQTQVFHGH-TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD  231 (343)
T ss_pred             ------cc----------------eEEEEecCC-cccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc
Confidence                  33                567778887 89999999999 88775443                 235678899


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCC
Q 014302          239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPS  313 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~  313 (427)
                      |.+++|.|+|.-+++|++|++.|+||++..+.....   .....|++++||..|++|+.+. ++.+..+|+.-..  ...
T Consensus       232 INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy-~d~~c~vWDtlk~e~vg~  310 (343)
T KOG0286|consen  232 INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY-DDFTCNVWDTLKGERVGV  310 (343)
T ss_pred             cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee-cCCceeEeeccccceEEE
Confidence            999999999999999999999999999988764333   4556899999999999998764 4445556654432  123


Q ss_pred             ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                      +.+|              .+.|+++..+|||.-|++   |+.|   .+|+||.
T Consensus       311 L~GH--------------eNRvScl~~s~DG~av~T---gSWD---s~lriW~  343 (343)
T KOG0286|consen  311 LAGH--------------ENRVSCLGVSPDGMAVAT---GSWD---STLRIWA  343 (343)
T ss_pred             eecc--------------CCeeEEEEECCCCcEEEe---cchh---HheeecC
Confidence            3333              348999999999999988   8888   5699994

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=4e-23  Score=212.74  Aligned_cols=277  Identities=10%  Similarity=0.146  Sum_probs=189.6

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC---C--cceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEecc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---K--DACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPS  173 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~---~--~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~  173 (427)
                      ..|.+++|+|+|++||+|+.|+.|+||++....   .  ........+...|.+++|+|....+|+++ .++.|++||+.
T Consensus       484 ~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~  563 (793)
T PLN00181        484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVA  563 (793)
T ss_pred             CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECC
Confidence            379999999999999999999999999976421   0  01111223456799999998644566665 46999999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccCce--------------EE--ecc
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLGTP--------------IR--RGF  236 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~--------------~~--~~~  236 (427)
                                               ....+..+..| ...|++++|+| ++.+++++..              +.  .+.
T Consensus       564 -------------------------~~~~~~~~~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~  617 (793)
T PLN00181        564 -------------------------RSQLVTEMKEH-EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK  617 (793)
T ss_pred             -------------------------CCeEEEEecCC-CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence                                     11344445555 78899999997 7777654321              10  123


Q ss_pred             CCeEEEEEc-cCCCEEEEEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302          237 GGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  313 (427)
Q Consensus       237 ~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~  313 (427)
                      ..+.++.|+ ++|.+|++|+.|+.|++||++..+.  ..+..|...|.++.|. ++.+|++++ .++.+.+|++......
T Consensus       618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s-~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS-TDNTLKLWDLSMSISG  695 (793)
T ss_pred             CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE-CCCEEEEEeCCCCccc
Confidence            567888885 5789999999999999999987653  3345899999999997 678888765 4558888887542110


Q ss_pred             ccccccccccccceee-ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee---eeeeeC---CCC
Q 014302          314 LDAHLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL---IGFIRG---PGD  386 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~---~~~~~~---~~~  386 (427)
                      ...       .....+ .+...+..++|+|++.+||+   ++.|   +.|++|+...........   ...+.+   ...
T Consensus       696 ~~~-------~~l~~~~gh~~~i~~v~~s~~~~~las---gs~D---~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~  762 (793)
T PLN00181        696 INE-------TPLHSFMGHTNVKNFVGLSVSDGYIAT---GSET---NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA  762 (793)
T ss_pred             cCC-------cceEEEcCCCCCeeEEEEcCCCCEEEE---EeCC---CEEEEEECCCCCceEEEecccCCcccccccCCC
Confidence            000       001111 23347889999999999999   6666   679999986543221110   001111   111


Q ss_pred             CCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          387 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       387 ~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      .....+++|.|+   +..|++|.++|.|.+|++.
T Consensus       763 ~~~V~~v~ws~~---~~~lva~~~dG~I~i~~~~  793 (793)
T PLN00181        763 SQFISSVCWRGQ---SSTLVAANSTGNIKILEMV  793 (793)
T ss_pred             CcEEEEEEEcCC---CCeEEEecCCCcEEEEecC
Confidence            223568889885   6789999999999999873

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.93  E-value=2.8e-23  Score=186.94  Aligned_cols=248  Identities=19%  Similarity=0.286  Sum_probs=174.2

Q ss_pred             CCCCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC----Ce
Q 014302           93 HVHLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GG  166 (427)
Q Consensus        93 ~~~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~----~~  166 (427)
                      ...+..+|  .++...|||.|.|+|+|...|+|||||................++|.+++|++|+++++|+|..    +.
T Consensus        51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~  130 (603)
T KOG0318|consen   51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH  130 (603)
T ss_pred             ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence            34444555  8999999999999999999999999998775222222333467899999999999888888843    45


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC------------cccCce---
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF------------PGLGTP---  231 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~------------l~~~~~---  231 (427)
                      +.+||...                           .+-.+.+| ...|.++.|-|.--+            +..|.+   
T Consensus       131 ~F~~DSG~---------------------------SvGei~Gh-Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF  182 (603)
T KOG0318|consen  131 VFLWDSGN---------------------------SVGEITGH-SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF  182 (603)
T ss_pred             EEEecCCC---------------------------ccceeecc-ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee
Confidence            66787651                           12223333 555555555543322            112223   


Q ss_pred             ---EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc----ccCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          232 ---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       232 ---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                         ++.|..-|.++.|+|||.++++.+.||+|.+||-.+++....    ..|++.|.+++|+||++.+++++ .+.++++
T Consensus       183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S-aDkt~KI  261 (603)
T KOG0318|consen  183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS-ADKTIKI  261 (603)
T ss_pred             eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec-CCceEEE
Confidence               345788999999999999999999999999999999887322    28999999999999999999864 5558888


Q ss_pred             eeeCCCCC--------Cc----------ccccccccccc------------ceee-ccCCceeEEEECCCCCEEEEEEec
Q 014302          305 IHFASKPP--------SL----------DAHLLPVDLPD------------IVSL-TGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       305 ~~~~~~~~--------~~----------~~~~~~~~~~~------------~~~~-~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      |++.....        ++          ..|...+.+..            ...+ .|...|+++..+||+++|.+   +
T Consensus       262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S---g  338 (603)
T KOG0318|consen  262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS---G  338 (603)
T ss_pred             EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe---e
Confidence            88775311        00          11221111111            1111 23458999999999999977   7


Q ss_pred             CCCcceeEEEEEEeccCceEEE
Q 014302          354 GDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      +.|   |.|.-|+..++....+
T Consensus       339 syD---G~I~~W~~~~g~~~~~  357 (603)
T KOG0318|consen  339 SYD---GHINSWDSGSGTSDRL  357 (603)
T ss_pred             ccC---ceEEEEecCCcccccc
Confidence            777   7799999988765533

>PTZ00421 coronin; Provisional

Probab=99.92  E-value=1.4e-22  Score=194.13  Aligned_cols=215  Identities=13%  Similarity=0.184  Sum_probs=155.1

Q ss_pred             CCCCCC--ceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCC-----cceeeccCCcCCeeEEEEccCCCceEEEe-cCC
Q 014302           95 HLLPEV--DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRPNGGRSLSVG-CKG  165 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~  165 (427)
                      .++.+|  .|++++|+| ++++||+|+.|++|+|||+.....     .......+|...|.+++|+|++..+|+++ .|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            345566  899999999 888999999999999999976421     23445568999999999999875666665 569


Q ss_pred             eEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEc
Q 014302          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWS  245 (427)
Q Consensus       166 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~s  245 (427)
                      .|+|||+.         ++                ....                          .+..|...|.+++|+
T Consensus       149 tVrIWDl~---------tg----------------~~~~--------------------------~l~~h~~~V~sla~s  177 (493)
T PTZ00421        149 VVNVWDVE---------RG----------------KAVE--------------------------VIKCHSDQITSLEWN  177 (493)
T ss_pred             EEEEEECC---------CC----------------eEEE--------------------------EEcCCCCceEEEEEE
Confidence            99999997         11                1111                          233456789999999


Q ss_pred             cCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCC-eeEEEECCCCCEEEEEEc---CCceeeeeeeCCCCCCccccccc
Q 014302          246 PTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGF-VTGATWDPEGRMILLAFA---GSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       246 p~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~-v~~v~~spdg~~l~~~~~---~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      |+|++|++++.|+.|++||+++++.. .+..|.+. ...+.|.+++..+++++.   .++.+.+|++.+....+..    
T Consensus       178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~----  253 (493)
T PTZ00421        178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST----  253 (493)
T ss_pred             CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE----
Confidence            99999999999999999999988763 33356543 457889999888876553   3457777777653211100    


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                            ........+....|++++++|+++  +..|   +.|++||+..+.++..
T Consensus       254 ------~~~d~~~~~~~~~~d~d~~~L~lg--gkgD---g~Iriwdl~~~~~~~~  297 (493)
T PTZ00421        254 ------VDLDQSSALFIPFFDEDTNLLYIG--SKGE---GNIRCFELMNERLTFC  297 (493)
T ss_pred             ------eccCCCCceEEEEEcCCCCEEEEE--EeCC---CeEEEEEeeCCceEEE
Confidence                  001112245667899999999885  3335   6799999998876543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=6.5e-23  Score=169.40  Aligned_cols=260  Identities=17%  Similarity=0.264  Sum_probs=187.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .|.+++|+-+|..||+|+.|++++||+++...........+|.+.|-.+.|.|....+++++ +++.|++||+.      
T Consensus        22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r------   95 (313)
T KOG1407|consen   22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR------   95 (313)
T ss_pred             cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec------
Confidence            78999999999999999999999999998873333344567999999999999877777665 56999999997      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce--------------EE--eccCCeEEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP--------------IR--RGFGGLSILK  243 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--------------~~--~~~~~v~~~~  243 (427)
                         .+                +++.....  ...=..+.|+|+|++++.+..              ..  .....+..++
T Consensus        96 ---~~----------------k~~~~i~~--~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~  154 (313)
T KOG1407|consen   96 ---SG----------------KCTARIET--KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEIS  154 (313)
T ss_pred             ---cC----------------cEEEEeec--cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeee
Confidence               11                33332222  222346789999998654321              00  1224567788


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLP  320 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~  320 (427)
                      |+-++.+++.....|+|.|......+.. .+..|.....++.|+|+|+++|+|+.+. .+-+|++.+...  .+..    
T Consensus       155 w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADA-lvSLWD~~ELiC~R~isR----  229 (313)
T KOG1407|consen  155 WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA-LVSLWDVDELICERCISR----  229 (313)
T ss_pred             ecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccc-eeeccChhHhhhheeecc----
Confidence            9988888886666899999998877774 4458999999999999999999987665 344444433211  1111    


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                                ..-+|+.++||.||++||+   +++|   ..|-|=+++++..+--.++       .. ....++|||+  
T Consensus       230 ----------ldwpVRTlSFS~dg~~lAS---aSED---h~IDIA~vetGd~~~eI~~-------~~-~t~tVAWHPk--  283 (313)
T KOG1407|consen  230 ----------LDWPVRTLSFSHDGRMLAS---ASED---HFIDIAEVETGDRVWEIPC-------EG-PTFTVAWHPK--  283 (313)
T ss_pred             ----------ccCceEEEEeccCcceeec---cCcc---ceEEeEecccCCeEEEeec-------cC-CceeEEecCC--
Confidence                      1128899999999999999   8988   5588888888876533222       11 2457999998  


Q ss_pred             CCceeEEEeeC---------ceEEEEec
Q 014302          401 QGPLLSVCWSS---------GFCCTYPL  419 (427)
Q Consensus       401 ~g~~l~v~~~~---------g~i~~~~~  419 (427)
                       ..|||.+.++         |.+.+|=|
T Consensus       284 -~~LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  284 -RPLLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             -CceeeEEecCCCCccccccceeEEecC
Confidence             5689988875         56666543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.2e-23  Score=181.20  Aligned_cols=259  Identities=14%  Similarity=0.172  Sum_probs=200.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      .|+.+-|+|+-..+++++.|++|++||+.++  +......+|...|.+++|+..| ++|++++ |-.+++||.+      
T Consensus       110 ~vt~v~~hp~~~~v~~as~d~tikv~D~~tg--~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~------  180 (406)
T KOG0295|consen  110 SVTRVIFHPSEALVVSASEDATIKVFDTETG--ELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFD------  180 (406)
T ss_pred             ceeeeeeccCceEEEEecCCceEEEEEccch--hhhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHH------
Confidence            8999999999999999999999999999998  5566678899999999999999 5666554 4459999997      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSIL  242 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~  242 (427)
                                        ..+.++..+.+| ...|.+++|-|.|.++.+..                 .++.|..-|..+
T Consensus       181 ------------------~~~~c~ks~~gh-~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v  241 (406)
T KOG0295|consen  181 ------------------TFFRCIKSLIGH-EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV  241 (406)
T ss_pred             ------------------HHHHHHHHhcCc-ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence                              123455555666 78899999999988765432                 255677889999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCC---------------CCEEEEEEcCCceeeeee
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPE---------------GRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spd---------------g~~l~~~~~~~~~i~~~~  306 (427)
                      +.+.||..+++++.|.+|++|-+.++++. .+..|...|.+++|.|.               ++++.+ .+.|++|++|+
T Consensus       242 ~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s-~SrDktIk~wd  320 (406)
T KOG0295|consen  242 RVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS-GSRDKTIKIWD  320 (406)
T ss_pred             EecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe-ecccceEEEEe
Confidence            99999999999999999999999999884 44589999999999874               245554 46666999999


Q ss_pred             eCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302          307 FASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP  384 (427)
Q Consensus       307 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~  384 (427)
                      +.....  ++.+|              ...|..++|+|.|+||++|   .+|   ++++|||++++++....+     ..
T Consensus       321 v~tg~cL~tL~gh--------------dnwVr~~af~p~Gkyi~Sc---aDD---ktlrvwdl~~~~cmk~~~-----ah  375 (406)
T KOG0295|consen  321 VSTGMCLFTLVGH--------------DNWVRGVAFSPGGKYILSC---ADD---KTLRVWDLKNLQCMKTLE-----AH  375 (406)
T ss_pred             ccCCeEEEEEecc--------------cceeeeeEEcCCCeEEEEE---ecC---CcEEEEEeccceeeeccC-----CC
Confidence            887633  33333              3489999999999999996   344   779999999988863321     11


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                       +. -..++.||.+..   .+..|.-|..+.+|.
T Consensus       376 -~h-fvt~lDfh~~~p---~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  376 -EH-FVTSLDFHKTAP---YVVTGSVDQTVKVWE  404 (406)
T ss_pred             -cc-eeEEEecCCCCc---eEEeccccceeeeee
Confidence             11 255888887743   466676777777663

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.92  E-value=6.5e-23  Score=196.91  Aligned_cols=239  Identities=21%  Similarity=0.333  Sum_probs=176.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      .|++++|+|++++|++++.|++++|||+.... .......+|...|++++|+|++ +++++|+ |++|+||++.      
T Consensus       205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~------  276 (456)
T KOG0266|consen  205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-RNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVR------  276 (456)
T ss_pred             ceeeeEECCCCcEEEEecCCceEEEeeccCCC-eEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEecc------
Confidence            89999999999999999999999999994332 3445556999999999999999 6666665 5999999998      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                         ++                .+..                          .+..|.++|.+++|++++++|++++.|+.
T Consensus       277 ---~~----------------~~~~--------------------------~l~~hs~~is~~~f~~d~~~l~s~s~d~~  311 (456)
T KOG0266|consen  277 ---TG----------------ECVR--------------------------KLKGHSDGISGLAFSPDGNLLVSASYDGT  311 (456)
T ss_pred             ---CC----------------eEEE--------------------------eeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence               11                2222                          35567889999999999999999999999


Q ss_pred             EEEEEcCCCCc---cccccCCC--CeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--CCccccccccccccceeeccC
Q 014302          260 FYLWETNTWTS---EPWSSTSG--FVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       260 v~iwd~~~~~~---~~~~~~~~--~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      |++||+.++..   .....+..  .+..++|+|++.+++++. .++.+..|++....  ..+.+|...           .
T Consensus       312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~-~d~~~~~w~l~~~~~~~~~~~~~~~-----------~  379 (456)
T KOG0266|consen  312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS-LDRTLKLWDLRSGKSVGTYTGHSNL-----------V  379 (456)
T ss_pred             EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec-CCCeEEEEEccCCcceeeecccCCc-----------c
Confidence            99999999983   23333333  699999999999999875 45588888887642  233333321           0


Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe--e
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW--S  410 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~--~  410 (427)
                      ..+.+...++.++++.+   ++.|   +.|++|++.++..+.     .+.+.. ......++++|.   ..+++.+.  .
T Consensus       380 ~~~~~~~~~~~~~~i~s---g~~d---~~v~~~~~~s~~~~~-----~l~~h~-~~~~~~~~~~~~---~~~~~s~s~~~  444 (456)
T KOG0266|consen  380 RCIFSPTLSTGGKLIYS---GSED---GSVYVWDSSSGGILQ-----RLEGHS-KAAVSDLSSHPT---ENLIASSSFEG  444 (456)
T ss_pred             eeEecccccCCCCeEEE---EeCC---ceEEEEeCCccchhh-----hhcCCC-CCceeccccCCC---cCeeeecCcCC
Confidence            14455666899999988   7777   679999999865441     122221 223456778876   34555554  5


Q ss_pred             CceEEEEec
Q 014302          411 SGFCCTYPL  419 (427)
Q Consensus       411 ~g~i~~~~~  419 (427)
                      |+.|.+|.-
T Consensus       445 d~~~~~w~~  453 (456)
T KOG0266|consen  445 DGLIRLWKY  453 (456)
T ss_pred             CceEEEecC
Confidence            888888864

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=3.3e-23  Score=201.59  Aligned_cols=281  Identities=18%  Similarity=0.289  Sum_probs=200.3

Q ss_pred             ceeeeEEcCCCCEEEEEe--CCCeEEEEEccCCC----------CcceeeccCCcCCeeEEEEccCCCceEEEecC-CeE
Q 014302          101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSG----------KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGI  167 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~--~d~~v~vwd~~~~~----------~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i  167 (427)
                      .|.+++.||+|..+|+|+  .|+.++||+.+.-.          .........|.+.|+|+.|+||| .+||+|+| .-|
T Consensus        15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v   93 (942)
T KOG0973|consen   15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLV   93 (942)
T ss_pred             eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCC-CeEeeccCcceE
Confidence            689999999999999999  89999999976531          12233345699999999999999 89999988 667


Q ss_pred             EEEeccC-CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------------
Q 014302          168 CIWAPSY-PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT----------------  230 (427)
Q Consensus       168 ~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------  230 (427)
                      .||.... +.......++        ....-..|+.+..+++| ...|..++|+|++.+++++.                
T Consensus        94 ~iW~~~~~~~~~~fgs~g--------~~~~vE~wk~~~~l~~H-~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~  164 (942)
T KOG0973|consen   94 MIWERAEIGSGTVFGSTG--------GAKNVESWKVVSILRGH-DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELL  164 (942)
T ss_pred             EEeeecccCCcccccccc--------cccccceeeEEEEEecC-CCccceeccCCCccEEEEecccceEEEEccccceee
Confidence            7998862 1111111111        01223468888889998 99999999999999976442                


Q ss_pred             -eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-------cCCCCeeEEEECCCCCEEEEEEcCCc--
Q 014302          231 -PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMILLAFAGSL--  300 (427)
Q Consensus       231 -~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~v~~spdg~~l~~~~~~~~--  300 (427)
                       .++.|.+.|-.+.|.|-|+|||+-+.|++|++|++..+......       ........+.|||||++|++...-.+  
T Consensus       165 ~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~  244 (942)
T KOG0973|consen  165 KVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK  244 (942)
T ss_pred             eeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence             35679999999999999999999999999999998776653322       34567889999999999997654332  


Q ss_pred             -eeeeeee--CCCCCCccccccccccccceeeccCCceeEEEECCC------C---------CE-EEEEEecCCCcceeE
Q 014302          301 -TLGSIHF--ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS------G---------ER-LAVSYKGGDDIYKGL  361 (427)
Q Consensus       301 -~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~------g---------~~-La~~~~~~~d~~~g~  361 (427)
                       .+.+++-  |+....+-|              |.+++..++|+|.      .         .| +|++  |+.|   ++
T Consensus       245 ~~~~IieR~tWk~~~~LvG--------------H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Av--gSqD---rS  305 (942)
T KOG0973|consen  245 STIAIIERGTWKVDKDLVG--------------HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAV--GSQD---RS  305 (942)
T ss_pred             ceeEEEecCCceeeeeeec--------------CCCceEEEEeChHHhccccccCCccCCCcceEEEEE--ecCC---cc
Confidence             2333322  222223333              4447788888862      1         12 3332  8888   77


Q ss_pred             EEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          362 IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       362 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      |.||.....+.+.+     +. .-.....++++|.|+   |..|-+|.-||.|.++.|
T Consensus       306 lSVW~T~~~RPl~v-----i~-~lf~~SI~DmsWspd---G~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  306 LSVWNTALPRPLFV-----IH-NLFNKSIVDMSWSPD---GFSLFACSLDGTVALIHF  354 (942)
T ss_pred             EEEEecCCCCchhh-----hh-hhhcCceeeeeEcCC---CCeEEEEecCCeEEEEEc
Confidence            99999866443311     11 112234778999886   888999999999999876

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.91  E-value=1.8e-22  Score=179.48  Aligned_cols=262  Identities=21%  Similarity=0.357  Sum_probs=195.5

Q ss_pred             CCceeeeEEcCCCC-EEEEEeCCCeEEEEEccCC---CCcceeecc---------CCcCCeeEEEEccCCCceEEEecC-
Q 014302           99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDS---GKDACILTS---------DSQRDVKVLEWRPNGGRSLSVGCK-  164 (427)
Q Consensus        99 ~~~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~---~~~~~~~~~---------~~~~~v~~l~~sp~~~~~la~g~~-  164 (427)
                      +++|.+.+|+|-.. .||+|+.|-+.++|++...   ......+.+         .....|++++|+.+| .+||+|.. 
T Consensus       178 ~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G-~~LatG~~~  256 (524)
T KOG0273|consen  178 ESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDG-TLLATGSED  256 (524)
T ss_pred             CCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCC-CeEEEeecC
Confidence            44899999999887 9999999999999999752   111111111         134679999999999 78888865 


Q ss_pred             CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-------------
Q 014302          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-------------  231 (427)
Q Consensus       165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-------------  231 (427)
                      |.++||+.+          |                ..+..+..| ..+|.++.|+.+|.++.++.+             
T Consensus       257 G~~riw~~~----------G----------------~l~~tl~~H-kgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  257 GEARIWNKD----------G----------------NLISTLGQH-KGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             cEEEEEecC----------c----------------hhhhhhhcc-CCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence            889999986          1                234556666 999999999999998765532             


Q ss_pred             ----EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          232 ----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       232 ----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                          +..|..+...+.|-. ...+++++.|+.|+|+.+....+ .++.+|.+.|.++.|.|.|+.|+++ ++++++++|+
T Consensus       310 ~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~-SdD~TlkiWs  387 (524)
T KOG0273|consen  310 VKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC-SDDGTLKIWS  387 (524)
T ss_pred             EEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe-cCCCeeEeee
Confidence                222444545666764 45688888899999999987777 4566999999999999999999875 6666999888


Q ss_pred             eCCCC--CCccccccccccccceeeccCCceeEEEECCCC---------CEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          307 FASKP--PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG---------ERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       307 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g---------~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      ..+..  ..+.+|..              .|..+.|+|+|         ..||++   +.|   ++|++||+..+.++..
T Consensus       388 ~~~~~~~~~l~~Hsk--------------ei~t~~wsp~g~v~~n~~~~~~l~sa---s~d---stV~lwdv~~gv~i~~  447 (524)
T KOG0273|consen  388 MGQSNSVHDLQAHSK--------------EIYTIKWSPTGPVTSNPNMNLMLASA---SFD---STVKLWDVESGVPIHT  447 (524)
T ss_pred             cCCCcchhhhhhhcc--------------ceeeEeecCCCCccCCCcCCceEEEe---ecC---CeEEEEEccCCceeEe
Confidence            76642  23444443              78899999875         466664   334   6799999999877622


Q ss_pred             eeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          376 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                           +....+  .+.+++|.|+   |..||.|.-||.|++|+..
T Consensus       448 -----f~kH~~--pVysvafS~~---g~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  448 -----LMKHQE--PVYSVAFSPN---GRYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             -----eccCCC--ceEEEEecCC---CcEEEecCCCCeeEecccc
Confidence                 222233  3678999986   8889999999999999853

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=3.6e-23  Score=196.46  Aligned_cols=247  Identities=16%  Similarity=0.291  Sum_probs=176.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccC--------------------------------C-----------------
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED--------------------------------S-----------------  131 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~--------------------------------~-----------------  131 (427)
                      .|.+|.||+||+|||+|+.|+.|+||.+..                                .                 
T Consensus       269 aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~  348 (712)
T KOG0283|consen  269 AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCV  348 (712)
T ss_pred             cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCccc
Confidence            899999999999999999999999999866                                0                 


Q ss_pred             ---------CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeE
Q 014302          132 ---------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTL  202 (427)
Q Consensus       132 ---------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (427)
                               ..++...+.+|.+.|.+|+||.++ .+|.++.|.+|+||++.                         .-.|
T Consensus       349 ~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-------------------------~~~C  402 (712)
T KOG0283|consen  349 LLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-------------------------RKEC  402 (712)
T ss_pred             cCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCC-------------------------Ccce
Confidence                     001122235799999999999888 88999999999999987                         1123


Q ss_pred             eehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCCEEEEEecCCcEEEEEcCCCCccccccCCCCee
Q 014302          203 VDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVT  281 (427)
Q Consensus       203 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~  281 (427)
                      +..+                           .|..-|+|++|+| |.+|+++|+-|+.||||++...+...|.....-|+
T Consensus       403 L~~F---------------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT  455 (712)
T KOG0283|consen  403 LKVF---------------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT  455 (712)
T ss_pred             eeEE---------------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe
Confidence            3322                           2666788888888 66789999999999999999888888877779999


Q ss_pred             EEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCccee
Q 014302          282 GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKG  360 (427)
Q Consensus       282 ~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g  360 (427)
                      ++||+|||++.++|+-++ .++.++..+.+.....|..   +.......++ .|+.+.|.|... .|+|+   ++|   .
T Consensus       456 Avcy~PdGk~avIGt~~G-~C~fY~t~~lk~~~~~~I~---~~~~Kk~~~~-rITG~Q~~p~~~~~vLVT---SnD---S  524 (712)
T KOG0283|consen  456 AVCYSPDGKGAVIGTFNG-YCRFYDTEGLKLVSDFHIR---LHNKKKKQGK-RITGLQFFPGDPDEVLVT---SND---S  524 (712)
T ss_pred             eEEeccCCceEEEEEecc-EEEEEEccCCeEEEeeeEe---eccCccccCc-eeeeeEecCCCCCeEEEe---cCC---C
Confidence            999999999999887655 5566655554322222211   1112222233 899999986443 35553   334   4


Q ss_pred             EEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          361 LIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       361 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .|+|||.+...++. ...|+.++    ...+.-+|..+   |.-+..+..|..|++|.+
T Consensus       525 rIRI~d~~~~~lv~-KfKG~~n~----~SQ~~Asfs~D---gk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  525 RIRIYDGRDKDLVH-KFKGFRNT----SSQISASFSSD---GKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             ceEEEeccchhhhh-hhcccccC----CcceeeeEccC---CCEEEEeecCceEEEEeC
Confidence            49999997766542 22333332    22345567663   665666669999999986

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=1.5e-22  Score=164.82  Aligned_cols=236  Identities=12%  Similarity=0.153  Sum_probs=181.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      +|+++.|+-||++.++++.|.+|++|+...+  .....+.+|...|.+++.+.|..++.++|+|..+.+||++       
T Consensus        19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-------   89 (307)
T KOG0316|consen   19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-------   89 (307)
T ss_pred             ceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc-------
Confidence            8999999999999999999999999998777  6777888899999999999999778888889999999998       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                        +|                +..+                          .+++|.+.|..++|+.+...+++|+.|.++
T Consensus        90 --TG----------------kv~R--------------------------r~rgH~aqVNtV~fNeesSVv~SgsfD~s~  125 (307)
T KOG0316|consen   90 --TG----------------KVDR--------------------------RFRGHLAQVNTVRFNEESSVVASGSFDSSV  125 (307)
T ss_pred             --cC----------------eeee--------------------------ecccccceeeEEEecCcceEEEecccccee
Confidence              33                2222                          355678889999999999999999999999


Q ss_pred             EEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302          261 YLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK  337 (427)
Q Consensus       261 ~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  337 (427)
                      ++||-++....+..   .....|.++..+.  ..+ .+++-+++++.+++.......              -..+.+|++
T Consensus       126 r~wDCRS~s~ePiQildea~D~V~Si~v~~--heI-vaGS~DGtvRtydiR~G~l~s--------------Dy~g~pit~  188 (307)
T KOG0316|consen  126 RLWDCRSRSFEPIQILDEAKDGVSSIDVAE--HEI-VAGSVDGTVRTYDIRKGTLSS--------------DYFGHPITS  188 (307)
T ss_pred             EEEEcccCCCCccchhhhhcCceeEEEecc--cEE-EeeccCCcEEEEEeecceeeh--------------hhcCCccee
Confidence            99999987764433   6677888888863  344 456777788888887753211              112338899


Q ss_pred             EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302          338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~  417 (427)
                      ++|++||+.+.++   +-+   ++|++.|-.+++++.     ...|...-+..+.+.+..   ....+.-|..||.+.||
T Consensus       189 vs~s~d~nc~La~---~l~---stlrLlDk~tGklL~-----sYkGhkn~eykldc~l~q---sdthV~sgSEDG~Vy~w  254 (307)
T KOG0316|consen  189 VSFSKDGNCSLAS---SLD---STLRLLDKETGKLLK-----SYKGHKNMEYKLDCCLNQ---SDTHVFSGSEDGKVYFW  254 (307)
T ss_pred             EEecCCCCEEEEe---ecc---ceeeecccchhHHHH-----Hhcccccceeeeeeeecc---cceeEEeccCCceEEEE
Confidence            9999999998884   444   569999999998762     222332222234444533   35578889999999999


Q ss_pred             ecc
Q 014302          418 PLI  420 (427)
Q Consensus       418 ~~~  420 (427)
                      +|-
T Consensus       255 dLv  257 (307)
T KOG0316|consen  255 DLV  257 (307)
T ss_pred             Eec
Confidence            974

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.91  E-value=2.6e-22  Score=173.22  Aligned_cols=252  Identities=16%  Similarity=0.229  Sum_probs=188.4

Q ss_pred             CCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEec
Q 014302           96 LLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAP  172 (427)
Q Consensus        96 ~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~  172 (427)
                      .+..|  +|.+++.+|+.+++|||+.|....||+..++  +......+|...|+++.||.+| .+||+|.- +.|+||..
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g--e~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG--EFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC--cceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEc
Confidence            34455  8999999999999999999999999999988  5667778999999999999999 88998865 89999999


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF  252 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~  252 (427)
                      .         ++                ....                          .+......+..+.|+|.+..|+
T Consensus       136 s---------tg----------------~~~~--------------------------~~~~e~~dieWl~WHp~a~ill  164 (399)
T KOG0296|consen  136 S---------TG----------------GEQW--------------------------KLDQEVEDIEWLKWHPRAHILL  164 (399)
T ss_pred             c---------cC----------------ceEE--------------------------EeecccCceEEEEecccccEEE
Confidence            7         22                0000                          0111234677899999999999


Q ss_pred             EEecCCcEEEEEcCCC-CccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302          253 AAKFDGTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  331 (427)
Q Consensus       253 ~~~~dg~v~iwd~~~~-~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (427)
                      +|+.||.+.+|.+.+. .+..+.+|..++++=.|.|||+.++++.. +++|.+|+.....+...-.          . ..
T Consensus       165 AG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~-dgti~~Wn~ktg~p~~~~~----------~-~e  232 (399)
T KOG0296|consen  165 AGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD-DGTIIVWNPKTGQPLHKIT----------Q-AE  232 (399)
T ss_pred             eecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-CceEEEEecCCCceeEEec----------c-cc
Confidence            9999999999999984 44666799999999999999999998754 5588888877763311100          0 01


Q ss_pred             CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee-eeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302          332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL-IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS  410 (427)
Q Consensus       332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~  410 (427)
                      +.....+.++..+..+..   ++.+   +.+++-...+++++.... .+..-.+......-|+.|.|.+..-.|.|+|.-
T Consensus       233 ~~~~~~~~~~~~~~~~~~---g~~e---~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v  306 (399)
T KOG0296|consen  233 GLELPCISLNLAGSTLTK---GNSE---GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV  306 (399)
T ss_pred             cCcCCccccccccceeEe---ccCC---ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence            224567778888877766   5554   447777777777664432 111112333334558889998888889999999


Q ss_pred             CceEEEEec
Q 014302          411 SGFCCTYPL  419 (427)
Q Consensus       411 ~g~i~~~~~  419 (427)
                      ||+|.+|++
T Consensus       307 dG~i~iyD~  315 (399)
T KOG0296|consen  307 DGTIAIYDL  315 (399)
T ss_pred             cceEEEEec
Confidence            999999995

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=3.7e-22  Score=168.24  Aligned_cols=251  Identities=17%  Similarity=0.239  Sum_probs=177.3

Q ss_pred             CceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       100 ~~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      -.|.+|+||| ...+|+.++.|++||+|+++..+.........|.++|.+++|+.||..+++.++|+.+++||+.     
T Consensus        28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~-----  102 (347)
T KOG0647|consen   28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA-----  102 (347)
T ss_pred             cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc-----
Confidence            3789999999 4557778999999999999986334445556799999999999999888888899999999997     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC--EEEEEec
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD--YFFAAKF  256 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~  256 (427)
                          ++                            ++.               .+..|.++|..+.|-+...  .|++|+.
T Consensus       103 ----S~----------------------------Q~~---------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSW  135 (347)
T KOG0647|consen  103 ----SG----------------------------QVS---------------QVAAHDAPVKTCHWVPGMNYQCLVTGSW  135 (347)
T ss_pred             ----CC----------------------------Cee---------------eeeecccceeEEEEecCCCcceeEeccc
Confidence                11                            111               2345788899999876655  7889999


Q ss_pred             CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCcee
Q 014302          257 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE  336 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  336 (427)
                      |++|+.||++.............+.++..-  ...++++..+. .|.++++.+....++.+..|+..          .++
T Consensus       136 DKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~--~pm~vVata~r-~i~vynL~n~~te~k~~~SpLk~----------Q~R  202 (347)
T KOG0647|consen  136 DKTLKFWDTRSSNPVATLQLPERVYAADVL--YPMAVVATAER-HIAVYNLENPPTEFKRIESPLKW----------QTR  202 (347)
T ss_pred             ccceeecccCCCCeeeeeeccceeeehhcc--CceeEEEecCC-cEEEEEcCCCcchhhhhcCcccc----------eee
Confidence            999999999987775555555555555432  23455554444 78888888776555555544321          568


Q ss_pred             EEEECCCCCEEEEEEecCCCcceeEEEEEEeccC-ceEEEeeeeeeeCC---CCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302          337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGP---GDNPKPVAFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~f~~~~~~g~~l~v~~~~g  412 (427)
                      +++.-+|.+..|.   |+-+   |.+.|..+..+ +....+..+..+..   .+.-.+..|+|||.  .|.+.++| +||
T Consensus       203 ~va~f~d~~~~al---GsiE---Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~--hgtlvTaG-sDG  273 (347)
T KOG0647|consen  203 CVACFQDKDGFAL---GSIE---GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPV--HGTLVTAG-SDG  273 (347)
T ss_pred             EEEEEecCCceEe---eeec---ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecc--cceEEEec-CCc
Confidence            8888777776676   5555   67999888763 33333444444321   11123557999995  57777777 999


Q ss_pred             eEEEEeccccCC
Q 014302          413 FCCTYPLIFRSH  424 (427)
Q Consensus       413 ~i~~~~~~~~~~  424 (427)
                      ++.||+-=-+.+
T Consensus       274 tf~FWDkdar~k  285 (347)
T KOG0647|consen  274 TFSFWDKDARTK  285 (347)
T ss_pred             eEEEecchhhhh
Confidence            999998544333

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1.9e-22  Score=185.06  Aligned_cols=233  Identities=14%  Similarity=0.204  Sum_probs=187.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      +|++..|-+..+|+++|+.|..|+||++++.  +.......|.+-|++++.+|..+.+|.++.|-.|++|+.+       
T Consensus        57 PvRa~kfiaRknWiv~GsDD~~IrVfnynt~--ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we-------  127 (794)
T KOG0276|consen   57 PVRAAKFIARKNWIVTGSDDMQIRVFNYNTG--EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE-------  127 (794)
T ss_pred             chhhheeeeccceEEEecCCceEEEEecccc--eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc-------
Confidence            7889999999999999999999999999998  6667778899999999999999888888888999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCCEEEEEecCCc
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGT  259 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~  259 (427)
                                       ..|.+.+.+.+|                          ..-|.+++|.| |.+.+++++-|++
T Consensus       128 -----------------~~wa~~qtfeGH--------------------------~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen  128 -----------------NEWACEQTFEGH--------------------------EHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             -----------------CceeeeeEEcCc--------------------------ceEEEEEEecCCCccceeeeecccc
Confidence                             256666666655                          44566666766 5568889999999


Q ss_pred             EEEEEcCCCCc-cccccCCCCeeEEEECCCC--CEEEEEEcCCceeeeeeeCCCC--CCccccccccccccceeeccCCc
Q 014302          260 FYLWETNTWTS-EPWSSTSGFVTGATWDPEG--RMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       260 v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg--~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      |+||.+.+..+ .++.+|...|.++++-+-|  .+|++| .++.++++|++.++.  .+++||..              .
T Consensus       165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsg-aDD~tiKvWDyQtk~CV~TLeGHt~--------------N  229 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISG-ADDLTIKVWDYQTKSCVQTLEGHTN--------------N  229 (794)
T ss_pred             EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEec-CCCceEEEeecchHHHHHHhhcccc--------------c
Confidence            99999988777 4555999999999998755  588765 566689999988874  37788877              7


Q ss_pred             eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302          335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC  414 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i  414 (427)
                      |+.+.|+|.-..+++   |++|   |+|+||+..+-++......       .-++..||+-++.   ...+++|+..|.|
T Consensus       230 vs~v~fhp~lpiiis---gsED---GTvriWhs~Ty~lE~tLn~-------gleRvW~I~~~k~---~~~i~vG~Deg~i  293 (794)
T KOG0276|consen  230 VSFVFFHPELPIIIS---GSED---GTVRIWNSKTYKLEKTLNY-------GLERVWCIAAHKG---DGKIAVGFDEGSV  293 (794)
T ss_pred             ceEEEecCCCcEEEE---ecCC---ccEEEecCcceehhhhhhc-------CCceEEEEeecCC---CCeEEEeccCCcE
Confidence            899999999999988   8888   8899999987665422221       2234678887775   4458999888876


Q ss_pred             EE
Q 014302          415 CT  416 (427)
Q Consensus       415 ~~  416 (427)
                      .+
T Consensus       294 ~v  295 (794)
T KOG0276|consen  294 TV  295 (794)
T ss_pred             EE
Confidence            54

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=2.9e-22  Score=190.44  Aligned_cols=255  Identities=14%  Similarity=0.190  Sum_probs=195.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      .|..++|||...+++++--+|.|++||+.-+  ........|.++|+.+.|+|+++ ++++|+ |-.|++|+..      
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~--tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk------   81 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMG--TLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYK------   81 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhh--hHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEecc------
Confidence            6889999999999999999999999999876  45555667999999999999995 555555 4789999997      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-----------------ceEEeccCCeEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-----------------TPIRRGFGGLSIL  242 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-----------------~~~~~~~~~v~~~  242 (427)
                                         .-+++-.+.+| ...|..+.|++.--|+.+.                 ..+++|.--|.|.
T Consensus        82 -------------------~rrclftL~GH-lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcA  141 (1202)
T KOG0292|consen   82 -------------------TRRCLFTLLGH-LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCA  141 (1202)
T ss_pred             -------------------cceehhhhccc-cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEee
Confidence                               33667777777 8888888888877664432                 2356788889999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCc-----c-------------------------ccccCCCCeeEEEECCCCCEE
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTS-----E-------------------------PWSSTSGFVTGATWDPEGRMI  292 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~-------------------------~~~~~~~~v~~v~~spdg~~l  292 (427)
                      +|+|....++++|-|.+|||||+...+.     .                         .+.+|...|.-++|+|.-..+
T Consensus       142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli  221 (1202)
T KOG0292|consen  142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI  221 (1202)
T ss_pred             ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence            9999999999999999999999853221     0                         112788899999999988888


Q ss_pred             EEEEcCCceeeeeeeCCCC----CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          293 LLAFAGSLTLGSIHFASKP----PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       293 ~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      ++| +++..+++|++...+    .+..+|..              .|+++-|+|....+++   .++|   ++|+|||+.
T Consensus       222 VSG-~DDRqVKlWrmnetKaWEvDtcrgH~n--------------nVssvlfhp~q~lIlS---nsED---ksirVwDm~  280 (1202)
T KOG0292|consen  222 VSG-ADDRQVKLWRMNETKAWEVDTCRGHYN--------------NVSSVLFHPHQDLILS---NSED---KSIRVWDMT  280 (1202)
T ss_pred             Eec-CCcceeeEEEeccccceeehhhhcccC--------------CcceEEecCccceeEe---cCCC---ccEEEEecc
Confidence            765 566588888877642    23445555              7899999999988888   7888   779999998


Q ss_pred             cCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEE
Q 014302          369 RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  415 (427)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~  415 (427)
                      ....+..    | +  .+..+..+++-||.   ..+.|.|-.+|.+.
T Consensus       281 kRt~v~t----f-r--rendRFW~laahP~---lNLfAAgHDsGm~V  317 (1202)
T KOG0292|consen  281 KRTSVQT----F-R--RENDRFWILAAHPE---LNLFAAGHDSGMIV  317 (1202)
T ss_pred             cccceee----e-e--ccCCeEEEEEecCC---cceeeeecCCceEE
Confidence            7765522    1 1  13334667888886   55777776666544

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1e-22  Score=175.61  Aligned_cols=223  Identities=17%  Similarity=0.273  Sum_probs=182.9

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~  174 (427)
                      |++|  .|..++|+..|++||+++.|-.+++||++.. ........+|...|.++.|-|.|..++.++.|.+|+.|+++ 
T Consensus       146 LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-  223 (406)
T KOG0295|consen  146 LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-  223 (406)
T ss_pred             hhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc-
Confidence            3444  8999999999999999999999999999875 23555667899999999999999777777788999999998 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccC
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFG  237 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~  237 (427)
                              ++                +++..+..| ..-|..+..+.||.+++++.                 .++.|.-
T Consensus       224 --------tg----------------~cv~t~~~h-~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh  278 (406)
T KOG0295|consen  224 --------TG----------------YCVKTFPGH-SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH  278 (406)
T ss_pred             --------cc----------------eeEEeccCc-hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcccc
Confidence                    33                777878887 66888889999998866442                 3667888


Q ss_pred             CeEEEEEccC---------------CCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302          238 GLSILKWSPT---------------GDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLT  301 (427)
Q Consensus       238 ~v~~~~~sp~---------------g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~  301 (427)
                      .|.+++|.|.               ++++++++.|++|++||+.++.+ ..+.+|..+|..++|+|.|+||+++ .++++
T Consensus       279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc-aDDkt  357 (406)
T KOG0295|consen  279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSC-ADDKT  357 (406)
T ss_pred             ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEE-ecCCc
Confidence            9999998762               25788999999999999999998 4556999999999999999999976 56669


Q ss_pred             eeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          302 LGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       302 i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      +++|++...+.  .+..|..              -+++++|+.+..++++   |+-|   .++++|.-
T Consensus       358 lrvwdl~~~~cmk~~~ah~h--------------fvt~lDfh~~~p~VvT---GsVd---qt~KvwEc  405 (406)
T KOG0295|consen  358 LRVWDLKNLQCMKTLEAHEH--------------FVTSLDFHKTAPYVVT---GSVD---QTVKVWEC  405 (406)
T ss_pred             EEEEEeccceeeeccCCCcc--------------eeEEEecCCCCceEEe---cccc---ceeeeeec
Confidence            99999988644  3333333              6799999998888877   8877   56999964

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.90  E-value=4.3e-22  Score=186.10  Aligned_cols=237  Identities=14%  Similarity=0.189  Sum_probs=185.2

Q ss_pred             CCCCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC--CcceeeccCCcCCeeEEEEccCCCceEEEec-CCeE
Q 014302           93 HVHLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGI  167 (427)
Q Consensus        93 ~~~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i  167 (427)
                      ...++.+|  .|.+++...+|.+||+|+.|.++++|.++.+.  ........+|...|.+++++..+..+|++++ |.++
T Consensus       357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tl  436 (775)
T KOG0319|consen  357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTL  436 (775)
T ss_pred             ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceE
Confidence            44567788  78888866778999999999999999995552  2233445679999999999988877777765 5999


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce----------------
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP----------------  231 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~----------------  231 (427)
                      ++|++....+....                ....+......| ...|++++.+|+.+++++++.                
T Consensus       437 K~W~l~~s~~~~~~----------------~~~~~~~t~~aH-dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~  499 (775)
T KOG0319|consen  437 KLWDLPKSKETAFP----------------IVLTCRYTERAH-DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG  499 (775)
T ss_pred             EEecCCCccccccc----------------ceehhhHHHHhh-cccccceEecCCCceEEecccccceeeecccCceEEE
Confidence            99999731111100                000111122333 778999999999999887743                


Q ss_pred             -EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          232 -IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       232 -~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                       +++|..+++++.|+|..+.++++|.|++|+||.+.+..+. ++.+|...|..+.|-.+|+.|++++.++ .+++|++..
T Consensus       500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG-liKlWnikt  578 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG-LIKLWNIKT  578 (775)
T ss_pred             EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC-cEEEEeccc
Confidence             6779999999999999999999999999999999999995 5558999999999999999999876555 888888877


Q ss_pred             CC--CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          310 KP--PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       310 ~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      ..  .+++.|..              .|++++-+|.+.++++   |+.|   |.|.+|.=
T Consensus       579 ~eC~~tlD~H~D--------------rvWaL~~~~~~~~~~t---gg~D---g~i~~wkD  618 (775)
T KOG0319|consen  579 NECEMTLDAHND--------------RVWALSVSPLLDMFVT---GGGD---GRIIFWKD  618 (775)
T ss_pred             hhhhhhhhhccc--------------eeEEEeecCccceeEe---cCCC---eEEEEeec
Confidence            53  36666665              8899999999998877   7777   78999964

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.89  E-value=5e-21  Score=166.07  Aligned_cols=268  Identities=15%  Similarity=0.208  Sum_probs=192.4

Q ss_pred             CCCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCc---eEEEecCCeEEEEec
Q 014302           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR---SLSVGCKGGICIWAP  172 (427)
Q Consensus        96 ~l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~---~la~g~~~~i~iw~~  172 (427)
                      ++.+--|.++...  +.+|++|+.||.++|||....   ......+|.++|.+++|.-....   ++.++.|.++++|.+
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk---~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK---SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCCc---eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            4444467777766  789999999999999998765   66777899999999999743323   566666799999998


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-----------------------
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-----------------------  229 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-----------------------  229 (427)
                      +.+.+.                     ..+....++| ...|.+++..++|....++                       
T Consensus       177 ~~~~~~---------------------~~~~~~~~GH-k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s  234 (423)
T KOG0313|consen  177 NVGENK---------------------VKALKVCRGH-KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS  234 (423)
T ss_pred             cCchhh---------------------hhHHhHhccc-ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence            733221                     1122223344 7777777777776652211                       


Q ss_pred             -------------------ceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCC
Q 014302          230 -------------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGR  290 (427)
Q Consensus       230 -------------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~  290 (427)
                                         ..+.+|..+|.++.|++ ...+++++.|.+|+.||+.+++............++..+|...
T Consensus       235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~  313 (423)
T KOG0313|consen  235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSK  313 (423)
T ss_pred             hhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccc
Confidence                               11456899999999998 6678899999999999999999877777788899999999999


Q ss_pred             EEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          291 MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       291 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      .|++++++.    .+.+|+.+.. .+.     +.......|.+.|.++.|+|...++.++  ++.|   +++++||+++.
T Consensus       314 Ll~~gssdr----~irl~DPR~~-~gs-----~v~~s~~gH~nwVssvkwsp~~~~~~~S--~S~D---~t~klWDvRS~  378 (423)
T KOG0313|consen  314 LLASGSSDR----HIRLWDPRTG-DGS-----VVSQSLIGHKNWVSSVKWSPTNEFQLVS--GSYD---NTVKLWDVRST  378 (423)
T ss_pred             eeeecCCCC----ceeecCCCCC-CCc-----eeEEeeecchhhhhheecCCCCceEEEE--EecC---CeEEEEEeccC
Confidence            998877555    5555554221 111     1113334566699999999999988776  7877   78999999875


Q ss_pred             c--eEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          371 P--LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       371 ~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .  ++      .+.+.  ..+.+++.|.    .+.++..|..|.+|++|.
T Consensus       379 k~ply------dI~~h--~DKvl~vdW~----~~~~IvSGGaD~~l~i~~  416 (423)
T KOG0313|consen  379 KAPLY------DIAGH--NDKVLSVDWN----EGGLIVSGGADNKLRIFK  416 (423)
T ss_pred             CCcce------eeccC--CceEEEEecc----CCceEEeccCcceEEEec
Confidence            4  33      23333  3346677775    355677777899998875

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=1.9e-21  Score=181.86  Aligned_cols=261  Identities=13%  Similarity=0.177  Sum_probs=190.5

Q ss_pred             ceeeeEE-cCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSW-HQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~-sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      .|..|.| .|+.++||+++..+.+|+|++.+.   ...+..+|...|.++....+| .+|++++ |+++++|.++..-  
T Consensus       325 EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~---~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~--  398 (775)
T KOG0319|consen  325 EILDMKFLGPEESHLAVATNSPELRLYTLPTS---YCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNC--  398 (775)
T ss_pred             hheeeeecCCccceEEEEeCCCceEEEecCCC---ceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCc--
Confidence            7888887 678889999999999999988777   444788999999999955566 6777775 4999999985111  


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-cc--------------------------cCce
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-PG--------------------------LGTP  231 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~--------------------------~~~~  231 (427)
                                         ....++....+| ...|.+++.+..+.- +.                          +...
T Consensus       399 -------------------~~~~~~a~~~gH-~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t  458 (775)
T KOG0319|consen  399 -------------------SKSLCVAQANGH-TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT  458 (775)
T ss_pred             -------------------chhhhhhhhccc-ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence                               111223333344 555555555433221 10                          0111


Q ss_pred             EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          232 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       232 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      .+.|...|.+++++|+.+.+|+|+.|++.+||++..... ..+.+|...|.+|.|+|..+.++++ +.|.++++|.+.+.
T Consensus       459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~-SgD~TvKIW~is~f  537 (775)
T KOG0319|consen  459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATC-SGDKTVKIWSISTF  537 (775)
T ss_pred             HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEec-cCCceEEEEEeccc
Confidence            344889999999999999999999999999999995555 3455999999999999999999875 56669999999886


Q ss_pred             --CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCC
Q 014302          311 --PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP  388 (427)
Q Consensus       311 --~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~  388 (427)
                        ..+++||..              .|..+.|-.+|+.|++   ++.|   |.|+||+++++.|..     .+.+..+  
T Consensus       538 SClkT~eGH~~--------------aVlra~F~~~~~qliS---~~ad---GliKlWnikt~eC~~-----tlD~H~D--  590 (775)
T KOG0319|consen  538 SCLKTFEGHTS--------------AVLRASFIRNGKQLIS---AGAD---GLIKLWNIKTNECEM-----TLDAHND--  590 (775)
T ss_pred             eeeeeecCccc--------------eeEeeeeeeCCcEEEe---ccCC---CcEEEEeccchhhhh-----hhhhccc--
Confidence              347777776              7899999999999999   5556   779999999998862     1222222  


Q ss_pred             CceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          389 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       389 ~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      +...++-.+.   +.....|-.||+|.+|-
T Consensus       591 rvWaL~~~~~---~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  591 RVWALSVSPL---LDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             eeEEEeecCc---cceeEecCCCeEEEEee
Confidence            2333333333   33566677999999984

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.88  E-value=1.6e-21  Score=165.01  Aligned_cols=269  Identities=16%  Similarity=0.221  Sum_probs=192.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC---------------CC-cceeeccCCcCCeeEEEEccCCCceEEEecC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---------------GK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCK  164 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~---------------~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~  164 (427)
                      .+++.+|+|||.++|+|+.|..|+|.|++..               .. ........|...|+++.|+|.. .+|++|++
T Consensus       114 ~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre-~ILiS~sr  192 (430)
T KOG0640|consen  114 PCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE-TILISGSR  192 (430)
T ss_pred             ceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-heEEeccC
Confidence            7899999999999999999999999998731               01 2234456799999999999998 77777765


Q ss_pred             -CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-------------
Q 014302          165 -GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-------------  230 (427)
Q Consensus       165 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-------------  230 (427)
                       ++|+++|+.++...                      +....+.  ...+|.+++|+|.|.++..|+             
T Consensus       193 D~tvKlFDfsK~saK----------------------rA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~  248 (430)
T KOG0640|consen  193 DNTVKLFDFSKTSAK----------------------RAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY  248 (430)
T ss_pred             CCeEEEEecccHHHH----------------------HHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence             99999999722110                      1111222  367889999999999865442             


Q ss_pred             -------eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          231 -------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       231 -------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                             +-..|.+.|+++.+|+.|+..++++.||.|+|||--+.+|....   .....|.+..|..+|+++++.+ .+.
T Consensus       249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-~DS  327 (430)
T KOG0640|consen  249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-KDS  327 (430)
T ss_pred             eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-Ccc
Confidence                   23347899999999999999999999999999999998885544   3456799999999999999764 445


Q ss_pred             eeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeee
Q 014302          301 TLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI  378 (427)
Q Consensus       301 ~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~  378 (427)
                      .++.|.+...+.  .+.|....-      .   ...-+...|+....|++.--..+     +.+.-||.++...+.+.+.
T Consensus       328 ~vkLWEi~t~R~l~~YtGAg~tg------r---q~~rtqAvFNhtEdyVl~pDEas-----~slcsWdaRtadr~~l~sl  393 (430)
T KOG0640|consen  328 TVKLWEISTGRMLKEYTGAGTTG------R---QKHRTQAVFNHTEDYVLFPDEAS-----NSLCSWDARTADRVALLSL  393 (430)
T ss_pred             eeeeeeecCCceEEEEecCCccc------c---hhhhhhhhhcCccceEEcccccc-----Cceeeccccchhhhhhccc
Confidence            888888876532  111110000      0   00124456777788887642222     4599999999877766655


Q ss_pred             eeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          379 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       379 ~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      |.      ...+-+|...|.   +.-...|..|-++.||-
T Consensus       394 gH------n~a~R~i~HSP~---~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  394 GH------NGAVRWIVHSPV---EPAFMTCSDDFRARFWY  424 (430)
T ss_pred             CC------CCCceEEEeCCC---CCceeeecccceeeeee
Confidence            43      122447777775   55677787888888773

>PTZ00420 coronin; Provisional

Probab=99.88  E-value=2.2e-20  Score=179.90  Aligned_cols=229  Identities=14%  Similarity=0.179  Sum_probs=151.0

Q ss_pred             CCCC--ceeeeEEcCC-CCEEEEEeCCCeEEEEEccCCCC------cceeeccCCcCCeeEEEEccCCCceEEEe-cCCe
Q 014302           97 LPEV--DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGK------DACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGG  166 (427)
Q Consensus        97 l~~~--~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~  166 (427)
                      +.+|  .|.+++|+|+ +.+||+|+.|++|+|||+.....      .......+|...|.+++|+|++..+|+++ .|+.
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dgt  149 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSF  149 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCe
Confidence            3445  8999999997 78999999999999999975421      12234467999999999999986677665 5699


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP  246 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp  246 (427)
                      |+|||+.         .+                ....                          .+. +...|.+++|+|
T Consensus       150 IrIWDl~---------tg----------------~~~~--------------------------~i~-~~~~V~Slswsp  177 (568)
T PTZ00420        150 VNIWDIE---------NE----------------KRAF--------------------------QIN-MPKKLSSLKWNI  177 (568)
T ss_pred             EEEEECC---------CC----------------cEEE--------------------------EEe-cCCcEEEEEECC
Confidence            9999997         11                0000                          011 234688999999


Q ss_pred             CCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeE-----EEECCCCCEEEEEEcCCc---eeeeeeeCCCCCCcccc
Q 014302          247 TGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTG-----ATWDPEGRMILLAFAGSL---TLGSIHFASKPPSLDAH  317 (427)
Q Consensus       247 ~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~-----v~~spdg~~l~~~~~~~~---~i~~~~~~~~~~~~~~~  317 (427)
                      +|.+|++++.|+.|+|||+++++.. .+..|.+.+..     ..|++++.+|++++.++.   .+.+|++......+.  
T Consensus       178 dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~--  255 (568)
T PTZ00420        178 KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV--  255 (568)
T ss_pred             CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE--
Confidence            9999999999999999999988763 34467665433     335689999998776653   577777664311110  


Q ss_pred             ccccccccceeeccCCceeEEEEC-CCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWD-ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  396 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~s-p~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  396 (427)
                              ...+.....+....|+ ++|.++++   |+.|   ++|++|++..+.+..+..  + . ....  ...++|.
T Consensus       256 --------~~~ld~~~~~L~p~~D~~tg~l~ls---GkGD---~tIr~~e~~~~~~~~l~~--~-~-s~~p--~~g~~f~  315 (568)
T PTZ00420        256 --------TMSIDNASAPLIPHYDESTGLIYLI---GKGD---GNCRYYQHSLGSIRKVNE--Y-K-SCSP--FRSFGFL  315 (568)
T ss_pred             --------EEEecCCccceEEeeeCCCCCEEEE---EECC---CeEEEEEccCCcEEeecc--c-c-cCCC--ccceEEc
Confidence                    0011111122222344 55777776   6666   679999998765443321  1 1 1111  2357788


Q ss_pred             cCC
Q 014302          397 DKF  399 (427)
Q Consensus       397 ~~~  399 (427)
                      |+.
T Consensus       316 Pkr  318 (568)
T PTZ00420        316 PKQ  318 (568)
T ss_pred             ccc
Confidence            874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=3.1e-21  Score=177.17  Aligned_cols=233  Identities=16%  Similarity=0.245  Sum_probs=183.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~  179 (427)
                      .|.++.|||...+++++-.+|.|.||++++.  .......-...+|++..|-+.. +.+++|+| ..|+|++.+      
T Consensus        15 RVKsVd~HPtePw~la~LynG~V~IWnyetq--tmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnyn------   85 (794)
T KOG0276|consen   15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQ--TMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYN------   85 (794)
T ss_pred             ceeeeecCCCCceEEEeeecCeeEEEecccc--eeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEecc------
Confidence            6899999999999999999999999999987  4444444466789999999877 55555555 889999997      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                         ++                ..+.                          .+..|..-|++++.+|...+++++++|-+
T Consensus        86 ---t~----------------ekV~--------------------------~FeAH~DyIR~iavHPt~P~vLtsSDDm~  120 (794)
T KOG0276|consen   86 ---TG----------------EKVK--------------------------TFEAHSDYIRSIAVHPTLPYVLTSSDDMT  120 (794)
T ss_pred             ---cc----------------eeeE--------------------------EeeccccceeeeeecCCCCeEEecCCccE
Confidence               21                1222                          34557788999999999999999999999


Q ss_pred             EEEEEcCCC-Cc-cccccCCCCeeEEEECCCC-CEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCc
Q 014302          260 FYLWETNTW-TS-EPWSSTSGFVTGATWDPEG-RMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       260 v~iwd~~~~-~~-~~~~~~~~~v~~v~~spdg-~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      |++||.+.. .+ +.+.+|...|++++|.|.. +.+++ ++-+.++++|.+.+..+  ++++|..              .
T Consensus       121 iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS-~sLDrTVKVWslgs~~~nfTl~gHek--------------G  185 (794)
T KOG0276|consen  121 IKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFAS-ASLDRTVKVWSLGSPHPNFTLEGHEK--------------G  185 (794)
T ss_pred             EEEeeccCceeeeeEEcCcceEEEEEEecCCCccceee-eeccccEEEEEcCCCCCceeeecccc--------------C
Confidence            999998754 34 5666999999999999955 45555 45666999999988644  5667766              8


Q ss_pred             eeEEEECC--CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302          335 IEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       335 i~~v~~sp--~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g  412 (427)
                      |+++++=+  |..+|++   |++|   .+|+|||.++..|++     .+.|....  ..++.|||.+   .+++.|..||
T Consensus       186 VN~Vdyy~~gdkpylIs---gaDD---~tiKvWDyQtk~CV~-----TLeGHt~N--vs~v~fhp~l---piiisgsEDG  249 (794)
T KOG0276|consen  186 VNCVDYYTGGDKPYLIS---GADD---LTIKVWDYQTKSCVQ-----TLEGHTNN--VSFVFFHPEL---PIIISGSEDG  249 (794)
T ss_pred             cceEEeccCCCcceEEe---cCCC---ceEEEeecchHHHHH-----Hhhccccc--ceEEEecCCC---cEEEEecCCc
Confidence            89999975  4468988   8888   679999999998873     33343333  5578899974   5899999999


Q ss_pred             eEEEEe
Q 014302          413 FCCTYP  418 (427)
Q Consensus       413 ~i~~~~  418 (427)
                      ++.+|.
T Consensus       250 TvriWh  255 (794)
T KOG0276|consen  250 TVRIWN  255 (794)
T ss_pred             cEEEec
Confidence            999996

>PTZ00420 coronin; Provisional

Probab=99.88  E-value=3.1e-20  Score=178.89  Aligned_cols=239  Identities=13%  Similarity=0.176  Sum_probs=155.0

Q ss_pred             EeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCcccccccccCC
Q 014302          117 ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRG  195 (427)
Q Consensus       117 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~  195 (427)
                      |+.++.++||+....  .......+|...|.+++|+|+...+|++|+ |+.|+||++...+.                  
T Consensus        50 GG~~gvI~L~~~~r~--~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~------------------  109 (568)
T PTZ00420         50 GGLIGAIRLENQMRK--PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE------------------  109 (568)
T ss_pred             CCceeEEEeeecCCC--ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc------------------
Confidence            456788999987665  455566789999999999998446766665 59999999961100                  


Q ss_pred             CCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEE-EEEecCCcEEEEEcCCCCccccc
Q 014302          196 PGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYF-FAAKFDGTFYLWETNTWTSEPWS  274 (427)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~dg~v~iwd~~~~~~~~~~  274 (427)
                            ....+.    .               ....+..|...|.+++|+|++..+ ++++.|++|+|||+++++.....
T Consensus       110 ------~~~~i~----~---------------p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i  164 (568)
T PTZ00420        110 ------SVKEIK----D---------------PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI  164 (568)
T ss_pred             ------cccccc----c---------------ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE
Confidence                  000000    0               001244577889999999999875 58899999999999988764333


Q ss_pred             cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEe
Q 014302          275 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK  352 (427)
Q Consensus       275 ~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~  352 (427)
                      .+...|.+++|+|+|+.|++++ .++.+++|++.....  .+.+|....         ....+....|++++.+|+++  
T Consensus       165 ~~~~~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i~tl~gH~g~~---------~s~~v~~~~fs~d~~~IlTt--  232 (568)
T PTZ00420        165 NMPKKLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIASSFHIHDGGK---------NTKNIWIDGLGGDDNYILST--  232 (568)
T ss_pred             ecCCcEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEEEEEecccCCc---------eeEEEEeeeEcCCCCEEEEE--
Confidence            4667899999999999998765 455888888776422  222222110         00023334567999999885  


Q ss_pred             cCCCcceeEEEEEEecc-CceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          353 GGDDIYKGLIAIYDARR-TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       353 ~~~d~~~g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      |.++...++|+|||++. ...+..     +.. ......+...|.+  ..|.++.+|..|+.|.+|++.
T Consensus       233 G~d~~~~R~VkLWDlr~~~~pl~~-----~~l-d~~~~~L~p~~D~--~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        233 GFSKNNMREMKLWDLKNTTSALVT-----MSI-DNASAPLIPHYDE--STGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             EcCCCCccEEEEEECCCCCCceEE-----EEe-cCCccceEEeeeC--CCCCEEEEEECCCeEEEEEcc
Confidence            33221124699999985 332211     111 1111122222322  258889999999999999974

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=7.7e-20  Score=155.58  Aligned_cols=245  Identities=13%  Similarity=0.169  Sum_probs=177.8

Q ss_pred             CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEEeccCC
Q 014302           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYP  175 (427)
Q Consensus        98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw~~~~~  175 (427)
                      ..+.|+++.|+++|.+|++++.|.+++|||...+  ........+.-+|..+.|......++.+..  +.+|+..++.  
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~--   88 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH--   88 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee--
Confidence            3458999999999999999999999999999887  455555556667888888877656776665  5788888776  


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK  255 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  255 (427)
                                             .-+.++                          .+.+|...|.+++.+|-+..+++++
T Consensus        89 -----------------------dNkylR--------------------------YF~GH~~~V~sL~~sP~~d~FlS~S  119 (311)
T KOG1446|consen   89 -----------------------DNKYLR--------------------------YFPGHKKRVNSLSVSPKDDTFLSSS  119 (311)
T ss_pred             -----------------------cCceEE--------------------------EcCCCCceEEEEEecCCCCeEEecc
Confidence                                   113333                          3445677899999999999999999


Q ss_pred             cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CCCccccccccccccceeeccCCc
Q 014302          256 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      .|++|++||++..++.-... ...-..++|.|+|-++|.+...+ .|+++++..- ...+..-....        .....
T Consensus       120 ~D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~--------~~~~e  189 (311)
T KOG1446|consen  120 LDKTVRLWDLRVKKCQGLLN-LSGRPIAAFDPEGLIFALANGSE-LIKLYDLRSFDKGPFTTFSITD--------NDEAE  189 (311)
T ss_pred             cCCeEEeeEecCCCCceEEe-cCCCcceeECCCCcEEEEecCCC-eEEEEEecccCCCCceeEccCC--------CCccc
Confidence            99999999999888865542 22334678999999998876665 7777777653 11111100000        11226


Q ss_pred             eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeC-CCCCCCceeEEeccCCCCCceeEEEeeCce
Q 014302          335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGF  413 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~  413 (427)
                      .+.|.|||||++|+.+..+      +.+++.|.-+|.+.     ..+.. +....-++...|.|+   ++.+..|..||+
T Consensus       190 w~~l~FS~dGK~iLlsT~~------s~~~~lDAf~G~~~-----~tfs~~~~~~~~~~~a~ftPd---s~Fvl~gs~dg~  255 (311)
T KOG1446|consen  190 WTDLEFSPDGKSILLSTNA------SFIYLLDAFDGTVK-----STFSGYPNAGNLPLSATFTPD---SKFVLSGSDDGT  255 (311)
T ss_pred             eeeeEEcCCCCEEEEEeCC------CcEEEEEccCCcEe-----eeEeeccCCCCcceeEEECCC---CcEEEEecCCCc
Confidence            7999999999999995433      44999999888743     12222 223333567889997   677999999999


Q ss_pred             EEEEec
Q 014302          414 CCTYPL  419 (427)
Q Consensus       414 i~~~~~  419 (427)
                      |++|.+
T Consensus       256 i~vw~~  261 (311)
T KOG1446|consen  256 IHVWNL  261 (311)
T ss_pred             EEEEEc
Confidence            999987

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=6.9e-21  Score=176.40  Aligned_cols=241  Identities=15%  Similarity=0.240  Sum_probs=177.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC-CcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .|+++.|+++|.+||+|..+|.|.|||....  ........ |...|.+++|+  + .++.+|.. +.|..+|+...   
T Consensus       219 ~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~--k~~~~~~~~h~~rvg~laW~--~-~~lssGsr~~~I~~~dvR~~---  290 (484)
T KOG0305|consen  219 LVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ--KKTRTLRGSHASRVGSLAWN--S-SVLSSGSRDGKILNHDVRIS---  290 (484)
T ss_pred             ceEEEEECCCCCEEEEeecCCeEEEEehhhc--cccccccCCcCceeEEEecc--C-ceEEEecCCCcEEEEEEecc---
Confidence            7999999999999999999999999998876  33333344 99999999999  3 57777765 88999999710   


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                                                   .+                  ....+..|...|..++|++|+++||+|+.|+
T Consensus       291 -----------------------------~~------------------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN  323 (484)
T KOG0305|consen  291 -----------------------------QH------------------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDN  323 (484)
T ss_pred             -----------------------------hh------------------hhhhhhcccceeeeeEECCCCCeeccCCCcc
Confidence                                         00                  0002455788899999999999999999999


Q ss_pred             cEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302          259 TFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK  337 (427)
Q Consensus       259 ~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  337 (427)
                      .+.|||...... ..+..|.+.|.+++|+|-.+-|++. +++...+.|++|+...   +.       ......-+..|.+
T Consensus       324 ~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs-GGGs~D~~i~fwn~~~---g~-------~i~~vdtgsQVcs  392 (484)
T KOG0305|consen  324 VVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT-GGGSADRCIKFWNTNT---GA-------RIDSVDTGSQVCS  392 (484)
T ss_pred             ceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE-cCCCcccEEEEEEcCC---Cc-------EecccccCCceee
Confidence            999999966555 4556999999999999966555433 3333556666666421   00       1122233458999


Q ss_pred             EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302          338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~  417 (427)
                      |.|++..+-|+++..-+ +   ..|.||+..+...+     ..+.+.  ...++.++..|+   |..+++|.+|.++.||
T Consensus       393 L~Wsk~~kEi~sthG~s-~---n~i~lw~~ps~~~~-----~~l~gH--~~RVl~la~SPd---g~~i~t~a~DETlrfw  458 (484)
T KOG0305|consen  393 LIWSKKYKELLSTHGYS-E---NQITLWKYPSMKLV-----AELLGH--TSRVLYLALSPD---GETIVTGAADETLRFW  458 (484)
T ss_pred             EEEcCCCCEEEEecCCC-C---CcEEEEecccccee-----eeecCC--cceeEEEEECCC---CCEEEEecccCcEEec
Confidence            99999998888865333 3   35999999885543     222232  234778888886   8889999999999999


Q ss_pred             eccc
Q 014302          418 PLIF  421 (427)
Q Consensus       418 ~~~~  421 (427)
                      .++=
T Consensus       459 ~~f~  462 (484)
T KOG0305|consen  459 NLFD  462 (484)
T ss_pred             cccC
Confidence            9653

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=8.6e-21  Score=169.71  Aligned_cols=234  Identities=16%  Similarity=0.168  Sum_probs=178.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~  179 (427)
                      .|.++.|..||++||.|...|.|+|+|+.+.  .......+|+.+|..+.|+|++..++++|+| +.+++||++      
T Consensus        70 ~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s------  141 (487)
T KOG0310|consen   70 VVYSVDFRSDGRLLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS------  141 (487)
T ss_pred             ceeEEEeecCCeEEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC------
Confidence            6899999999999999999999999995543  4566678899999999999999899999988 667799997      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EEEEEecCC
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YFFAAKFDG  258 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~dg  258 (427)
                         +.                ....                          .+..|...|.+.+|+|-.. .+++|+.||
T Consensus       142 ---~a----------------~v~~--------------------------~l~~htDYVR~g~~~~~~~hivvtGsYDg  176 (487)
T KOG0310|consen  142 ---TA----------------YVQA--------------------------ELSGHTDYVRCGDISPANDHIVVTGSYDG  176 (487)
T ss_pred             ---Cc----------------EEEE--------------------------EecCCcceeEeeccccCCCeEEEecCCCc
Confidence               11                1111                          2445778899999999776 555999999


Q ss_pred             cEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302          259 TFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK  337 (427)
Q Consensus       259 ~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  337 (427)
                      .|++||+++... .....|..+|.++.+-|.|+.+++++  ++.+++|++-.....+           .....|...|++
T Consensus       177 ~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll-----------~~~~~H~KtVTc  243 (487)
T KOG0310|consen  177 KVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLL-----------TSMFNHNKTVTC  243 (487)
T ss_pred             eEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceeh-----------hhhhcccceEEE
Confidence            999999998854 33348999999999999999998754  3368888887532111           001113348999


Q ss_pred             EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302          338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~  417 (427)
                      +++..++..|++   ++-|   +.|++||+.+.+++.        +-.-....++++..|+   ++.+.+|.++|.+..=
T Consensus       244 L~l~s~~~rLlS---~sLD---~~VKVfd~t~~Kvv~--------s~~~~~pvLsiavs~d---d~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  244 LRLASDSTRLLS---GSLD---RHVKVFDTTNYKVVH--------SWKYPGPVLSIAVSPD---DQTVVIGMSNGLVSIR  306 (487)
T ss_pred             EEeecCCceEee---cccc---cceEEEEccceEEEE--------eeecccceeeEEecCC---CceEEEecccceeeee
Confidence            999999999988   7878   559999987766542        1122233667888775   6689999999987653

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.88  E-value=4.1e-21  Score=179.80  Aligned_cols=231  Identities=11%  Similarity=0.153  Sum_probs=166.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC--------------------------------------cceeeccCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--------------------------------------DACILTSDS  142 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~--------------------------------------~~~~~~~~~  142 (427)
                      +|+++++|.+...+++| ..+.+++|+.++...                                      ........|
T Consensus       375 dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH  453 (888)
T KOG0306|consen  375 DVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH  453 (888)
T ss_pred             heeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc
Confidence            67777777766666666 345666777664200                                      112222469


Q ss_pred             cCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEe-----ehhcccCCCceeee
Q 014302          143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV-----DFLRSQNGEQITAL  217 (427)
Q Consensus       143 ~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~  217 (427)
                      .+.+++++.+||+..++..+.|.+|++|+...-..                 .++.+-+.+     +.++  ....|.|+
T Consensus       454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-----------------~~gt~~k~lsl~~~rtLe--l~ddvL~v  514 (888)
T KOG0306|consen  454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-----------------VPGTQKKVLSLKHTRTLE--LEDDVLCV  514 (888)
T ss_pred             ccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-----------------cCcccceeeeeccceEEe--ccccEEEE
Confidence            99999999999998788888889999999862111                 001110111     1111  35678899


Q ss_pred             EeCCCCCCcccCc-----------------eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCC
Q 014302          218 SWGPDGRFPGLGT-----------------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGF  279 (427)
Q Consensus       218 ~~spdg~~l~~~~-----------------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~  279 (427)
                      ++||||++++.+-                 .+.+|.-+|.+|.+|||++.+++|+.|+.|+||-++-+.|. .+.+|...
T Consensus       515 ~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS  594 (888)
T KOG0306|consen  515 SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS  594 (888)
T ss_pred             EEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence            9999999976431                 14568899999999999999999999999999999999995 45599999


Q ss_pred             eeEEEECCCCCEEEEEEcCCceeeeeeeCC--CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCc
Q 014302          280 VTGATWDPEGRMILLAFAGSLTLGSIHFAS--KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI  357 (427)
Q Consensus       280 v~~v~~spdg~~l~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~  357 (427)
                      |+++.|-|.. +++++++.++.++.|+-..  .-..+.+|..              .|++++.+|+|.++++   ++.| 
T Consensus       595 vm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~--------------ev~cLav~~~G~~vvs---~shD-  655 (888)
T KOG0306|consen  595 VMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS--------------EVWCLAVSPNGSFVVS---SSHD-  655 (888)
T ss_pred             eeEEEEcccc-eeEEEecCcceEEeechhhhhhheeeccchh--------------eeeeeEEcCCCCeEEe---ccCC-
Confidence            9999999955 4555566666777775443  2234555544              8899999999999998   6666 


Q ss_pred             ceeEEEEEEeccCce
Q 014302          358 YKGLIAIYDARRTPL  372 (427)
Q Consensus       358 ~~g~i~vwd~~~~~~  372 (427)
                        ..|++|......+
T Consensus       656 --~sIRlwE~tde~~  668 (888)
T KOG0306|consen  656 --KSIRLWERTDEIL  668 (888)
T ss_pred             --ceeEeeeccCcce
Confidence              5699999765443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.88  E-value=1.5e-20  Score=155.95  Aligned_cols=238  Identities=13%  Similarity=0.202  Sum_probs=171.8

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~  172 (427)
                      .++++|  +++.+.++.+|.+|.+++.|.++.||--..+  +..-.+.+|.+.|+++...-+.+.++..+.|.++++||+
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv   81 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDV   81 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEc
Confidence            345666  8999999999999999999999999976555  677888999999999999998866666667799999999


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------------------
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------------------  227 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------------------  227 (427)
                      .         +|                +.+..++  ...+|..+.|+++|++..                         
T Consensus        82 ~---------tG----------------k~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~  134 (327)
T KOG0643|consen   82 E---------TG----------------KQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI  134 (327)
T ss_pred             C---------CC----------------cEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence            8         22                2222222  356677777777777621                         


Q ss_pred             -cCce---EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc--ccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302          228 -LGTP---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLT  301 (427)
Q Consensus       228 -~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~~~~~~~~~  301 (427)
                       ...+   +..+...++.+-|+|.+++|++|..||.|.+||+++++..  .-..|...|+.+++++|..++++++.+. +
T Consensus       135 ~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt-t  213 (327)
T KOG0643|consen  135 DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDT-T  213 (327)
T ss_pred             cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCc-c
Confidence             1111   2335578889999999999999999999999999998652  2337888999999999999999875444 6


Q ss_pred             eeeeeeCCCC---------C-------Cccccccc------cccc--------------------ccee-eccCCceeEE
Q 014302          302 LGSIHFASKP---------P-------SLDAHLLP------VDLP--------------------DIVS-LTGSQGIEKI  338 (427)
Q Consensus       302 i~~~~~~~~~---------~-------~~~~~~~~------~~~~--------------------~~~~-~~~~~~i~~v  338 (427)
                      -++|++.+..         +       .+..|...      .++.                    +... ..|=++|++|
T Consensus       214 akl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsv  293 (327)
T KOG0643|consen  214 AKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSV  293 (327)
T ss_pred             ceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCccee
Confidence            6666655421         0       00011000      0000                    0001 1234699999


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      +|+|+|+..++   |++|   |.|++....
T Consensus       294 AfhPdGksYsS---GGED---G~VR~h~Fd  317 (327)
T KOG0643|consen  294 AFHPDGKSYSS---GGED---GYVRLHHFD  317 (327)
T ss_pred             EECCCCccccc---CCCC---ceEEEEEec
Confidence            99999999988   9999   779987553

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.87  E-value=3.8e-20  Score=167.16  Aligned_cols=216  Identities=21%  Similarity=0.381  Sum_probs=165.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      .+..+.|+|++++|++++.|+.+++|++...  ........|...+.++.|+|++ .+++++. ++.+.+|++.      
T Consensus        53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~------  123 (289)
T cd00200          53 PVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVE------  123 (289)
T ss_pred             ceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECC------
Confidence            5789999999999999999999999999875  3444445778899999999997 6777776 7999999986      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSIL  242 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~  242 (427)
                                         .......+..+ ...+.+++|+|+++++..+.                 .+..+...+.++
T Consensus       124 -------------------~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~  183 (289)
T cd00200         124 -------------------TGKCLTTLRGH-TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV  183 (289)
T ss_pred             -------------------CcEEEEEeccC-CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceE
Confidence                               11233334433 66789999999877654332                 123455689999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccccccc
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLL  319 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~  319 (427)
                      .|+|+++.+++++.++.|++||++..+..... .+...+.+++|+|++.+++++ ..++.+++|++.....  .+.    
T Consensus       184 ~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~i~~~~~~~~~~~~~----  258 (289)
T cd00200         184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG-SEDGTIRVWDLRTGECVQTLS----  258 (289)
T ss_pred             EECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE-cCCCcEEEEEcCCceeEEEcc----
Confidence            99999999998888999999999987764444 788899999999997777654 4455888888765311  111    


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                                .+...|.+++|+|++++|++   ++.|   +.|++|+
T Consensus       259 ----------~~~~~i~~~~~~~~~~~l~~---~~~d---~~i~iw~  289 (289)
T cd00200         259 ----------GHTNSVTSLAWSPDGKRLAS---GSAD---GTIRIWD  289 (289)
T ss_pred             ----------ccCCcEEEEEECCCCCEEEE---ecCC---CeEEecC
Confidence                      23347899999999999988   5666   6799996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.87  E-value=2.5e-20  Score=192.07  Aligned_cols=229  Identities=17%  Similarity=0.259  Sum_probs=160.1

Q ss_pred             ceeeeEEcCC-CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc-CCCceEEEe-cCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVG-CKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~la~g-~~~~i~iw~~~~~~~  177 (427)
                      .|.+++|+|. +.+||+++.|++|+|||+...  .......+|...|++++|+| ++ .+|++| .|+.|++||+.    
T Consensus       534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~-~~L~Sgs~Dg~v~iWd~~----  606 (793)
T PLN00181        534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARS--QLVTEMKEHEKRVWSIDYSSADP-TLLASGSDDGSVKLWSIN----  606 (793)
T ss_pred             ceeeEEeccCCCCEEEEEeCCCeEEEEECCCC--eEEEEecCCCCCEEEEEEcCCCC-CEEEEEcCCCEEEEEECC----
Confidence            6889999875 679999999999999999876  45555678999999999997 55 566555 56999999997    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC-CCCCCcccCc------------------eEEeccCC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRFPGLGT------------------PIRRGFGG  238 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~~~~------------------~~~~~~~~  238 (427)
                           .+                ..+..+..  ...+.++.|+ ++|.+++.+.                  .+..|...
T Consensus       607 -----~~----------------~~~~~~~~--~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~  663 (793)
T PLN00181        607 -----QG----------------VSIGTIKT--KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT  663 (793)
T ss_pred             -----CC----------------cEEEEEec--CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence                 11                12222332  3467788884 4566544321                  23447788


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEEcCCCC------c-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302          239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWT------S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  311 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~------~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~  311 (427)
                      |.++.|. ++.+|++++.|+.|++||++...      . ..+.+|...+..++|+|++.+|++++ .++.+.+|+.....
T Consensus       664 V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs-~D~~v~iw~~~~~~  741 (793)
T PLN00181        664 VSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGS-ETNEVFVYHKAFPM  741 (793)
T ss_pred             EEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe-CCCEEEEEECCCCC
Confidence            9999997 78899999999999999997532      1 23447888999999999999998875 45577777754432


Q ss_pred             CCcccccccc-ccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          312 PSLDAHLLPV-DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       312 ~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      .......... .........+...|.+++|+|++..|++   ++.+   |.|+||++
T Consensus       742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva---~~~d---G~I~i~~~  792 (793)
T PLN00181        742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVA---ANST---GNIKILEM  792 (793)
T ss_pred             ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEE---ecCC---CcEEEEec
Confidence            1100000000 0000111123346999999999999988   5666   67999996

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.87  E-value=2.5e-20  Score=173.19  Aligned_cols=285  Identities=18%  Similarity=0.253  Sum_probs=192.8

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC--Cccee---eccCCcCCeeEEEEccCCCceEEEecCCeE
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--KDACI---LTSDSQRDVKVLEWRPNGGRSLSVGCKGGI  167 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~--~~~~~---~~~~~~~~v~~l~~sp~~~~~la~g~~~~i  167 (427)
                      .++.+|  -|+++.|+|.+..|++++.|.++.+|.-+...  +....   ...+...+..+.-|+|++..+|+-|..|+.
T Consensus       261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            456677  89999999999999999999999999876541  11111   112234568899999999767777777999


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCc---------------------
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFP---------------------  226 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l---------------------  226 (427)
                      ++|... +                     ...|.....+.+| ...|+.++|+|.|+++                     
T Consensus       341 hlWkt~-d---------------------~~~w~~~~~iSGH-~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~w  397 (764)
T KOG1063|consen  341 HLWKTK-D---------------------KTFWTQEPVISGH-VDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEW  397 (764)
T ss_pred             EEEecc-C---------------------ccceeeccccccc-cccceeeeecCCCCEEEEeccccceeeecccccccce
Confidence            999832 1                     1123333334444 5555555665555540                     


Q ss_pred             ----------------------------------------------------------------------c---------
Q 014302          227 ----------------------------------------------------------------------G---------  227 (427)
Q Consensus       227 ----------------------------------------------------------------------~---------  227 (427)
                                                                                            +         
T Consensus       398 HEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~  477 (764)
T KOG1063|consen  398 HEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPG  477 (764)
T ss_pred             eeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccc
Confidence                                                                                  0         


Q ss_pred             ---cC------------------------------------ceEEeccCCeEEEEEccCCCEEEEEecCC-----cEEEE
Q 014302          228 ---LG------------------------------------TPIRRGFGGLSILKWSPTGDYFFAAKFDG-----TFYLW  263 (427)
Q Consensus       228 ---~~------------------------------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg-----~v~iw  263 (427)
                         +|                                    ..+.+|...|++++.+|+|+++|+++...     .|++|
T Consensus       478 e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw  557 (764)
T KOG1063|consen  478 ETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLW  557 (764)
T ss_pred             ccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEE
Confidence               00                                    01445888999999999999999887654     49999


Q ss_pred             EcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECC
Q 014302          264 ETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA  342 (427)
Q Consensus       264 d~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  342 (427)
                      +..++.... +..|.-.|+.++|||||++|++++.+.    .|.+++..........   +  .....|..-|+++.|+|
T Consensus       558 ~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDR----t~sl~~~~~~~~~e~~---f--a~~k~HtRIIWdcsW~p  628 (764)
T KOG1063|consen  558 NTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDR----TVSLYEVQEDIKDEFR---F--ACLKAHTRIIWDCSWSP  628 (764)
T ss_pred             eccchhhhheecccceEEEEEEECCCCcEEEEeecCc----eEEeeeeecccchhhh---h--ccccccceEEEEcccCc
Confidence            999988755 669999999999999999999887555    5555543211111111   0  00112333689999999


Q ss_pred             CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC--CCceeEEEeeCceEEEEecc
Q 014302          343 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK--QGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       343 ~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~g~~l~v~~~~g~i~~~~~~  420 (427)
                      ++.++|+   ++.|   ++|+||.....+.-.+..   +...........++|+|.+.  .+.+++||...|.|.+|..+
T Consensus       629 de~~FaT---aSRD---K~VkVW~~~~~~d~~i~~---~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  629 DEKYFAT---ASRD---KKVKVWEEPDLRDKYISR---FACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             ccceeEE---ecCC---ceEEEEeccCchhhhhhh---hchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            9999988   6777   779999998763111110   01111122244667777653  46689999999999999976

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.87  E-value=2.7e-21  Score=169.47  Aligned_cols=264  Identities=13%  Similarity=0.176  Sum_probs=192.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|..+.|-++...|++|+.|..|++|+.............+..++|+++.|.+++..+||.+.++.+++|+++       
T Consensus       177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-------  249 (459)
T KOG0288|consen  177 EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-------  249 (459)
T ss_pred             ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc-------
Confidence            8999999999999999999999999999877544555666777889999999999889999999999999998       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEE--------------e--ccCCeEEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIR--------------R--GFGGLSILKW  244 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~--------------~--~~~~v~~~~~  244 (427)
                                        +......+.+| ...|+++.|.-....+.++..-+              .  ....+..+..
T Consensus       250 ------------------~~r~~~TLsGH-tdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~  310 (459)
T KOG0288|consen  250 ------------------SLRLRHTLSGH-TDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVC  310 (459)
T ss_pred             ------------------chhhhhhhccc-ccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEe
Confidence                              44566677776 88888888766544332222100              0  1122333333


Q ss_pred             ccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccccc
Q 014302          245 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVD  322 (427)
Q Consensus       245 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~  322 (427)
                      +  ...+++|-.|++||+||+++..+.......+.|+++..+++|..|++.+.++ ++.++++.....  .+..      
T Consensus       311 ~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd-tl~viDlRt~eI~~~~sA------  381 (459)
T KOG0288|consen  311 S--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD-TLKVIDLRTKEIRQTFSA------  381 (459)
T ss_pred             c--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC-ceeeeecccccEEEEeec------
Confidence            3  4456688899999999999998877666677999999999999999875555 777777766421  1110      


Q ss_pred             cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCC
Q 014302          323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG  402 (427)
Q Consensus       323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g  402 (427)
                         . .+.-+...+.+.|||+++|+|.   |+.|   |.|+||++.++++...     +..........+++|.|.   |
T Consensus       382 ---~-g~k~asDwtrvvfSpd~~YvaA---GS~d---gsv~iW~v~tgKlE~~-----l~~s~s~~aI~s~~W~~s---G  443 (459)
T KOG0288|consen  382 ---E-GFKCASDWTRVVFSPDGSYVAA---GSAD---GSVYIWSVFTGKLEKV-----LSLSTSNAAITSLSWNPS---G  443 (459)
T ss_pred             ---c-ccccccccceeEECCCCceeee---ccCC---CcEEEEEccCceEEEE-----eccCCCCcceEEEEEcCC---C
Confidence               0 1111225789999999999999   7887   7799999999988633     223334435779999985   4


Q ss_pred             ceeEEEeeCceEEEE
Q 014302          403 PLLSVCWSSGFCCTY  417 (427)
Q Consensus       403 ~~l~v~~~~g~i~~~  417 (427)
                      .-|..+..++.+.+|
T Consensus       444 ~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  444 SGLLSADKQKAVTLW  458 (459)
T ss_pred             chhhcccCCcceEec
Confidence            434444467777776

>PTZ00421 coronin; Provisional

Probab=99.87  E-value=1.2e-19  Score=173.99  Aligned_cols=250  Identities=13%  Similarity=0.159  Sum_probs=158.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC---------CC--cceeeccCCcCCeeEEEEcc-CCCceEEEe-cCCeE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS---------GK--DACILTSDSQRDVKVLEWRP-NGGRSLSVG-CKGGI  167 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~---------~~--~~~~~~~~~~~~v~~l~~sp-~~~~~la~g-~~~~i  167 (427)
                      .|+....++++..+++++.+..+..|+...+         ++  .......+|.+.|++++|+| ++ .+|+++ .|+.|
T Consensus        22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~-~~LaSgS~DgtI  100 (493)
T PTZ00421         22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDP-QKLFTASEDGTI  100 (493)
T ss_pred             ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCC-CEEEEEeCCCEE
Confidence            4555556667666666666666666654332         11  11123467999999999999 66 556655 56999


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT  247 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~  247 (427)
                      ++|++...+.                         ....    ..               .-..+..|...|.+++|+|+
T Consensus       101 kIWdi~~~~~-------------------------~~~~----~~---------------~l~~L~gH~~~V~~l~f~P~  136 (493)
T PTZ00421        101 MGWGIPEEGL-------------------------TQNI----SD---------------PIVHLQGHTKKVGIVSFHPS  136 (493)
T ss_pred             EEEecCCCcc-------------------------cccc----Cc---------------ceEEecCCCCcEEEEEeCcC
Confidence            9999971100                         0000    00               01134457788999999998


Q ss_pred             C-CEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccccccccccc
Q 014302          248 G-DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDL  323 (427)
Q Consensus       248 g-~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~  323 (427)
                      + .+|++++.|++|+|||+++++.. .+..|...|.+++|+|+|+.|++++ .++.+++|++.+...  .+.+|.     
T Consensus       137 ~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs-~Dg~IrIwD~rsg~~v~tl~~H~-----  210 (493)
T PTZ00421        137 AMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS-KDKKLNIIDPRDGTIVSSVEAHA-----  210 (493)
T ss_pred             CCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec-CCCEEEEEECCCCcEEEEEecCC-----
Confidence            6 58889999999999999988763 3447889999999999999998765 555888888766421  111111     


Q ss_pred             ccceeeccCCceeEEEECCCCCEEEEEE-ecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCC
Q 014302          324 PDIVSLTGSQGIEKIAWDASGERLAVSY-KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG  402 (427)
Q Consensus       324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~-~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g  402 (427)
                              +..+..+.|.+++..|+++. ..+.|   +.|++||++.....    ...... ..........|.++   +
T Consensus       211 --------~~~~~~~~w~~~~~~ivt~G~s~s~D---r~VklWDlr~~~~p----~~~~~~-d~~~~~~~~~~d~d---~  271 (493)
T PTZ00421        211 --------SAKSQRCLWAKRKDLIITLGCSKSQQ---RQIMLWDTRKMASP----YSTVDL-DQSSALFIPFFDED---T  271 (493)
T ss_pred             --------CCcceEEEEcCCCCeEEEEecCCCCC---CeEEEEeCCCCCCc----eeEecc-CCCCceEEEEEcCC---C
Confidence                    11345678999888877642 22345   67999999764321    111111 11111223345443   5


Q ss_pred             ceeEEEe-eCceEEEEecc
Q 014302          403 PLLSVCW-SSGFCCTYPLI  420 (427)
Q Consensus       403 ~~l~v~~-~~g~i~~~~~~  420 (427)
                      .+|.+|. .||.|.+|++.
T Consensus       272 ~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        272 NLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             CEEEEEEeCCCeEEEEEee
Confidence            6677765 59999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.6e-21  Score=168.61  Aligned_cols=222  Identities=16%  Similarity=0.223  Sum_probs=162.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|..+.||||.++|++++.|..+++||.+++.. ......++...+.+++|.|||.++++.+.|+++..|+++  |+   
T Consensus       271 ~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~-~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn---  344 (519)
T KOG0293|consen  271 PVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL-RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GN---  344 (519)
T ss_pred             ceEEEEECCCCCeEEecCchHheeeccCCcchh-hhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC--cc---
Confidence            899999999999999999999999999999822 112223356889999999999766666677999999997  11   


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce----------------EEeccCCeEEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP----------------IRRGFGGLSILKW  244 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~----------------~~~~~~~v~~~~~  244 (427)
                                        .   ....++-....|.+++.++||+++.....                +-....+|+++++
T Consensus       345 ------------------~---~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~i  403 (519)
T KOG0293|consen  345 ------------------I---LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSI  403 (519)
T ss_pred             ------------------h---hhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEE
Confidence                              1   11122222456889999999998432111                1113468999999


Q ss_pred             ccCCCEEEEEecCCcEEEEEcCCCCc-cccccCC--CCeeEEEECCCC-CEEEEEEcCCceeeeeeeCCCCC--Cccccc
Q 014302          245 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTS--GFVTGATWDPEG-RMILLAFAGSLTLGSIHFASKPP--SLDAHL  318 (427)
Q Consensus       245 sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~--~~v~~v~~spdg-~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~  318 (427)
                      |.||+++++.-.+..+++||++.... .++.+|+  ..+..-||.--. .++++ +++++.+++|+..+...  .+.||.
T Consensus       404 S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS-GSED~kvyIWhr~sgkll~~LsGHs  482 (519)
T KOG0293|consen  404 SKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS-GSEDSKVYIWHRISGKLLAVLSGHS  482 (519)
T ss_pred             cCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe-cCCCceEEEEEccCCceeEeecCCc
Confidence            99999999999999999999996654 3444444  456667787544 55555 56666999999877633  556666


Q ss_pred             cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      .              .|++|+|+|....+..+  +++|   |+|+||....
T Consensus       483 ~--------------~vNcVswNP~~p~m~AS--asDD---gtIRIWg~~~  514 (519)
T KOG0293|consen  483 K--------------TVNCVSWNPADPEMFAS--ASDD---GTIRIWGPSD  514 (519)
T ss_pred             c--------------eeeEEecCCCCHHHhhc--cCCC---CeEEEecCCc
Confidence            5              78999999877654443  7888   8899998753

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.9e-20  Score=157.74  Aligned_cols=271  Identities=13%  Similarity=0.243  Sum_probs=182.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      ...|+.|++.|.+||+|..||.|.|||+.+.  .......+|..+|++++||+||..+|.++.|..+.+||+..+.    
T Consensus        25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs----   98 (405)
T KOG1273|consen   25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS----   98 (405)
T ss_pred             ccceEEeccCcceeeeeccCCcEEEEEcccc--chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC----
Confidence            4789999999999999999999999999987  4555667899999999999999767777778999999997211    


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEec-----cCC
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRG-----FGG  238 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~-----~~~  238 (427)
                                           +...++  ...+|....|+|-.+......                 .+...     ...
T Consensus        99 ---------------------~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~s  155 (405)
T KOG1273|consen   99 ---------------------PLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSS  155 (405)
T ss_pred             ---------------------ceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccc
Confidence                                 111121  356677777777443311000                 01100     011


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC-cc
Q 014302          239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS-LD  315 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~-~~  315 (427)
                      ..+..|.+.|+++++|...|.+.+||..+.++....  .....|.++.++..|+.+++-+++. .|+.+.+.+-... -.
T Consensus       156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~  234 (405)
T KOG1273|consen  156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRD  234 (405)
T ss_pred             cccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCcc
Confidence            122348889999999999999999999999885443  2346889999999999999876555 7777766642110 01


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  395 (427)
                      +...+  ..+.+.+.....=.+++||.+|.|++.+   +..  ...++||.-..|.++.+     +.|+... .-+.+.|
T Consensus       235 ~e~e~--~~K~qDvVNk~~Wk~ccfs~dgeYv~a~---s~~--aHaLYIWE~~~GsLVKI-----LhG~kgE-~l~DV~w  301 (405)
T KOG1273|consen  235 GEVEP--EHKLQDVVNKLQWKKCCFSGDGEYVCAG---SAR--AHALYIWEKSIGSLVKI-----LHGTKGE-ELLDVNW  301 (405)
T ss_pred             CCcCh--hHHHHHHHhhhhhhheeecCCccEEEec---ccc--ceeEEEEecCCcceeee-----ecCCchh-heeeccc
Confidence            11110  0111111122234678999999999874   322  16799999999998744     3444322 2568889


Q ss_pred             ccCCCCCceeEEEeeCceEEEEe
Q 014302          396 HDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       396 ~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      ||-+.   +++ .-++|.+.+|.
T Consensus       302 hp~rp---~i~-si~sg~v~iw~  320 (405)
T KOG1273|consen  302 HPVRP---IIA-SIASGVVYIWA  320 (405)
T ss_pred             cccee---eee-eccCCceEEEE
Confidence            98632   232 22899999886

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.86  E-value=3e-20  Score=153.79  Aligned_cols=224  Identities=17%  Similarity=0.263  Sum_probs=153.8

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      .|-.++|+|... ++|+++.|.+|++||....  ++........+ =.-+.|+|+|.++++.+.++.|...|..      
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~--k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r------  136 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSG--KCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDAR------  136 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccC--cEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEec------
Confidence            788899988665 9999999999999999887  34333333333 3457899999666666666888888876      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-----------------cccCceEEeccCCeEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-----------------PGLGTPIRRGFGGLSIL  242 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-----------------l~~~~~~~~~~~~v~~~  242 (427)
                                         ..+.+...  .....+..++|+-++.+                 |..-..++.|.....|+
T Consensus       137 -------------------~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI  195 (313)
T KOG1407|consen  137 -------------------TYKIVNEE--QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICI  195 (313)
T ss_pred             -------------------ccceeehh--cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEE
Confidence                               11111111  12344556666655544                 11112356688889999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccc
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  321 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  321 (427)
                      .|+|+|++||+|+.|..+-+||+...-|.. +.-+..+|..+.||.||++||+++.+-    .+++......        
T Consensus       196 ~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh----~IDIA~vetG--------  263 (313)
T KOG1407|consen  196 EFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH----FIDIAEVETG--------  263 (313)
T ss_pred             EECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc----eEEeEecccC--------
Confidence            999999999999999999999999888854 447889999999999999999886554    4554442111        


Q ss_pred             ccccceeeccCCceeEEEECCCCCEEEEEEecCCC---cceeEEEEEEec
Q 014302          322 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD---IYKGLIAIYDAR  368 (427)
Q Consensus       322 ~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d---~~~g~i~vwd~~  368 (427)
                        .....+...++...|+|+|...+||-+..+.++   +..|+|++|-+.
T Consensus       264 --d~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  264 --DRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             --CeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence              112223344577999999999999875332221   113677777553

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.86  E-value=8.3e-20  Score=162.21  Aligned_cols=259  Identities=17%  Similarity=0.278  Sum_probs=181.0

Q ss_pred             CCCCCCceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcc--------eeeccCCcCCeeEEEEccCCCceEEEe-cC
Q 014302           95 HLLPEVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDA--------CILTSDSQRDVKVLEWRPNGGRSLSVG-CK  164 (427)
Q Consensus        95 ~~l~~~~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~--------~~~~~~~~~~v~~l~~sp~~~~~la~g-~~  164 (427)
                      .+.....|+.+.+-|+.. .+|+.+..+.|.|||+.......        .....+|.+.-.+|+|++.....|+++ .+
T Consensus       120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            344555788888999886 77888899999999997652222        224567888788999999765555555 45


Q ss_pred             CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEE
Q 014302          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKW  244 (427)
Q Consensus       165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~  244 (427)
                      ++|++||++..+.                                            +++.+.....+..|...|..++|
T Consensus       200 ~~i~lwdi~~~~~--------------------------------------------~~~~~~p~~~~~~h~~~VeDV~~  235 (422)
T KOG0264|consen  200 HTICLWDINAESK--------------------------------------------EDKVVDPKTIFSGHEDVVEDVAW  235 (422)
T ss_pred             CcEEEEecccccc--------------------------------------------CCccccceEEeecCCcceehhhc
Confidence            9999999981110                                            00111122346678889999999


Q ss_pred             ccCCCEEE-EEecCCcEEEEEcCCC--Cc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC---Ccccc
Q 014302          245 SPTGDYFF-AAKFDGTFYLWETNTW--TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP---SLDAH  317 (427)
Q Consensus       245 sp~g~~l~-~~~~dg~v~iwd~~~~--~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~---~~~~~  317 (427)
                      ++-...|+ +++.|+.+.|||+|++  +. ....+|.+.+.+++|+|-+.+++.+++.++++.+|++.+...   ++.+ 
T Consensus       236 h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~-  314 (422)
T KOG0264|consen  236 HPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG-  314 (422)
T ss_pred             cccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC-
Confidence            99777655 8999999999999964  22 233489999999999998887777777777999999888532   2233 


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE------Eeeee--eeeCCCCCCC
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS------LSLIG--FIRGPGDNPK  389 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~------~~~~~--~~~~~~~~~~  389 (427)
                                   +...|..|.|||+..-+..+  .+.|   +.+.|||+..-.-.+      -.|..  |+-+ +....
T Consensus       315 -------------H~dev~~V~WSPh~etvLAS--Sg~D---~rl~vWDls~ig~eq~~eda~dgppEllF~Hg-GH~~k  375 (422)
T KOG0264|consen  315 -------------HEDEVFQVEWSPHNETVLAS--SGTD---RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHG-GHTAK  375 (422)
T ss_pred             -------------CCcceEEEEeCCCCCceeEe--cccC---CcEEEEeccccccccChhhhccCCcceeEEec-Ccccc
Confidence                         34489999999986654443  4566   569999996421111      11222  3222 23334


Q ss_pred             ceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       390 ~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ...++|.|.  .-.+++....|+.+++|.+
T Consensus       376 V~DfsWnp~--ePW~I~SvaeDN~LqIW~~  403 (422)
T KOG0264|consen  376 VSDFSWNPN--EPWTIASVAEDNILQIWQM  403 (422)
T ss_pred             cccccCCCC--CCeEEEEecCCceEEEeec
Confidence            668889987  4567888889999999984

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=1.6e-19  Score=153.37  Aligned_cols=237  Identities=16%  Similarity=0.224  Sum_probs=168.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC--ceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|++++.+  +.++|+|+.|.+|+|||+...  ........|.+.|+++.|.+.-.  .+|+++.||.|.+|++.     
T Consensus        45 sitavAVs--~~~~aSGssDetI~IYDm~k~--~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-----  115 (362)
T KOG0294|consen   45 SITALAVS--GPYVASGSSDETIHIYDMRKR--KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-----  115 (362)
T ss_pred             ceeEEEec--ceeEeccCCCCcEEEEeccch--hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC-----
Confidence            78888875  899999999999999999877  44445557899999999998764  57777778999999997     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                                          .|.++..+                          +.|.+.|+.++++|.|+.-++.+.|+
T Consensus       116 --------------------~W~~~~sl--------------------------K~H~~~Vt~lsiHPS~KLALsVg~D~  149 (362)
T KOG0294|consen  116 --------------------SWELLKSL--------------------------KAHKGQVTDLSIHPSGKLALSVGGDQ  149 (362)
T ss_pred             --------------------CeEEeeee--------------------------cccccccceeEecCCCceEEEEcCCc
Confidence                                66666544                          44566799999999999888888999


Q ss_pred             cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          259 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      .+++||+-.++.............+.|+|.|.+++....+.  +.++.+.+... +.            .+.....+.++
T Consensus       150 ~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v-~~------------~i~~~~r~l~~  214 (362)
T KOG0294|consen  150 VLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK--IDIYQLDNASV-FR------------EIENPKRILCA  214 (362)
T ss_pred             eeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE--EEEEecccHhH-hh------------hhhccccceee
Confidence            99999998888755554444555699999999888765443  33444433210 00            00011245666


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .|. ++..|++   |.++   +.|.+||..+..++     ..+.+....  .-.|.+.-+ ..+.+|..+.+||.|.+|+
T Consensus       215 ~~l-~~~~L~v---G~d~---~~i~~~D~ds~~~~-----~~~~AH~~R--VK~i~~~~~-~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  215 TFL-DGSELLV---GGDN---EWISLKDTDSDTPL-----TEFLAHENR--VKDIASYTN-PEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             eec-CCceEEE---ecCC---ceEEEeccCCCccc-----eeeecchhh--eeeeEEEec-CCceEEEEeccCceEEEEE
Confidence            665 4667877   6666   66999999874332     334443333  335554332 2356788888999999999


Q ss_pred             cccc
Q 014302          419 LIFR  422 (427)
Q Consensus       419 ~~~~  422 (427)
                      +--.
T Consensus       280 ~~~~  283 (362)
T KOG0294|consen  280 IDME  283 (362)
T ss_pred             cccc
Confidence            8665

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=1.1e-19  Score=173.02  Aligned_cols=207  Identities=13%  Similarity=0.167  Sum_probs=166.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      +|+.++|||++.++++|+.|..|+||++...  .......+|.+-|+.+.|++.-+.+|+++.|.+|+||++.       
T Consensus        53 pVRgv~FH~~qplFVSGGDDykIkVWnYk~r--rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-------  123 (1202)
T KOG0292|consen   53 PVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR--RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-------  123 (1202)
T ss_pred             ccceeeecCCCCeEEecCCccEEEEEecccc--eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc-------
Confidence            8999999999999999999999999999887  5666677899999999999999778887888999999998       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-------------------------------
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-------------------------------  229 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-------------------------------  229 (427)
                        ++                .++..+.+| ...|.|.+|+|...++.++                               
T Consensus       124 --sr----------------~~iavltGH-nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~  184 (1202)
T KOG0292|consen  124 --SR----------------KCIAVLTGH-NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQ  184 (1202)
T ss_pred             --CC----------------ceEEEEecC-ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcc
Confidence              22                677778887 8888999999966552211                               


Q ss_pred             ---------------ceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc---cccccCCCCeeEEEECCCCCE
Q 014302          230 ---------------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRM  291 (427)
Q Consensus       230 ---------------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~v~~spdg~~  291 (427)
                                     .++.+|..+|..++|+|.-..|++|++|+.|++|.+...+.   ....+|.+.|.++.|+|....
T Consensus       185 ~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l  264 (1202)
T KOG0292|consen  185 QGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL  264 (1202)
T ss_pred             ccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence                           12456889999999999999999999999999999865543   445599999999999998888


Q ss_pred             EEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEE
Q 014302          292 ILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       292 l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                      +++. ++++.|++|++.....  ++.              ...+.-+.++-+|..+++|..
T Consensus       265 IlSn-sEDksirVwDm~kRt~v~tfr--------------rendRFW~laahP~lNLfAAg  310 (1202)
T KOG0292|consen  265 ILSN-SEDKSIRVWDMTKRTSVQTFR--------------RENDRFWILAAHPELNLFAAG  310 (1202)
T ss_pred             eEec-CCCccEEEEecccccceeeee--------------ccCCeEEEEEecCCcceeeee
Confidence            8765 5666888888887632  111              112256777778888777773

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.86  E-value=6.2e-20  Score=158.63  Aligned_cols=217  Identities=17%  Similarity=0.217  Sum_probs=152.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .|+++.||.+|.+||||..+|.|+||..+++..  .......-..+.-+.|+|.+ .+|+.| .++.+.+|.+...    
T Consensus       108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~--~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~----  180 (399)
T KOG0296|consen  108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE--QWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQ----  180 (399)
T ss_pred             ceEEEEEccCceEEEecCCCccEEEEEcccCce--EEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCc----
Confidence            899999999999999999999999999998832  22223445678889999998 555555 4599999998721    


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc--------------------------------
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG--------------------------------  227 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~--------------------------------  227 (427)
                                           ...+.+.+| ..++++-.|.|||+.+.                                
T Consensus       181 ---------------------~~~kv~~Gh-~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~  238 (399)
T KOG0296|consen  181 ---------------------ALCKVMSGH-NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPC  238 (399)
T ss_pred             ---------------------ceeeEecCC-CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCc
Confidence                                 122223333 44444444444444311                                


Q ss_pred             -------------------------cCceEE-----------eccCCeEEEE---EccCCCEEEEEecCCcEEEEEcCCC
Q 014302          228 -------------------------LGTPIR-----------RGFGGLSILK---WSPTGDYFFAAKFDGTFYLWETNTW  268 (427)
Q Consensus       228 -------------------------~~~~~~-----------~~~~~v~~~~---~sp~g~~l~~~~~dg~v~iwd~~~~  268 (427)
                                               +++++.           .+...+.++.   |+..=.+.|+|+.||+|.|||+...
T Consensus       239 ~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~  318 (399)
T KOG0296|consen  239 ISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS  318 (399)
T ss_pred             cccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc
Confidence                                     111110           1222333333   4444456779999999999999998


Q ss_pred             CccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCE
Q 014302          269 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER  346 (427)
Q Consensus       269 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~  346 (427)
                      +.+....|...|..+.|-+ ..+|++++.++ .++.|+....+.  .+.||..              .|.+++.+|++++
T Consensus       319 ~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g-~v~~wDaRtG~l~~~y~GH~~--------------~Il~f~ls~~~~~  382 (399)
T KOG0296|consen  319 TLRHICEHEDGVTKLKWLN-TDYLLTACANG-KVRQWDARTGQLKFTYTGHQM--------------GILDFALSPQKRL  382 (399)
T ss_pred             hhheeccCCCceEEEEEcC-cchheeeccCc-eEEeeeccccceEEEEecCch--------------heeEEEEcCCCcE
Confidence            8888888999999999998 67787776555 888888777533  4456655              7899999999999


Q ss_pred             EEEEEecCCCcceeEEEEEEec
Q 014302          347 LAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       347 La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      +++   .+.|   ++.+||++.
T Consensus       383 vvT---~s~D---~~a~VF~v~  398 (399)
T KOG0296|consen  383 VVT---VSDD---NTALVFEVP  398 (399)
T ss_pred             EEE---ecCC---CeEEEEecC
Confidence            988   6666   669998864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.85  E-value=8.2e-20  Score=150.25  Aligned_cols=259  Identities=16%  Similarity=0.215  Sum_probs=195.1

Q ss_pred             ceeeeEEcC---CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQ---HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp---~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~  176 (427)
                      +|..++|||   +|-+|++++.|+.-.+.+=+++  .-.-...+|.+.|++...+.+- ...|++ .|=+-++||.-   
T Consensus        16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg--dwigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~---   89 (334)
T KOG0278|consen   16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG--DWIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAV---   89 (334)
T ss_pred             ceeEEeccCCCCCceEEEEeccCCCchhccCCCC--CcEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhh---
Confidence            788999975   7889999999999888655555  5566677899999999988776 444444 45677899976   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------------------EEeccCC
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------------IRRGFGG  238 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------------~~~~~~~  238 (427)
                            +|                ..+..+.  +..-|..++|+.|.+.+.+|..                  +.+|.++
T Consensus        90 ------tg----------------delhsf~--hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~  145 (334)
T KOG0278|consen   90 ------TG----------------DELHSFE--HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG  145 (334)
T ss_pred             ------hh----------------hhhhhhh--hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence                  22                1122222  3566789999999888766532                  5668899


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302          239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  318 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  318 (427)
                      |..+.|....+.|++++.|++||+||.+++...+.......|.++..+++|++|.++- .. .+..|+...- ..++...
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~-gs-sV~Fwdaksf-~~lKs~k  222 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY-GS-SVKFWDAKSF-GLLKSYK  222 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec-Cc-eeEEeccccc-cceeecc
Confidence            9999999999999988999999999999999887777888999999999999987642 22 3433433321 1122222


Q ss_pred             cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  398 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  398 (427)
                      +|.            .|.+.+.+|+...+++   |++|   ..++.||..++.-+..    +  ..+....+.|+.|.|+
T Consensus       223 ~P~------------nV~SASL~P~k~~fVa---Gged---~~~~kfDy~TgeEi~~----~--nkgh~gpVhcVrFSPd  278 (334)
T KOG0278|consen  223 MPC------------NVESASLHPKKEFFVA---GGED---FKVYKFDYNTGEEIGS----Y--NKGHFGPVHCVRFSPD  278 (334)
T ss_pred             Ccc------------ccccccccCCCceEEe---cCcc---eEEEEEeccCCceeee----c--ccCCCCceEEEEECCC
Confidence            222            7899999999977776   8988   6799999999887643    2  2334444779999996


Q ss_pred             CCCCceeEEEeeCceEEEEec
Q 014302          399 FKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       399 ~~~g~~l~v~~~~g~i~~~~~  419 (427)
                         |.+.|.|..||.|.+|-.
T Consensus       279 ---GE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  279 ---GELYASGSEDGTIRLWQT  296 (334)
T ss_pred             ---CceeeccCCCceEEEEEe
Confidence               999999999999999964

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.85  E-value=4.4e-20  Score=180.01  Aligned_cols=225  Identities=20%  Similarity=0.317  Sum_probs=170.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC----------------CCcceeeccCCcCCeeEEEEccCCCceEEEe-c
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----------------GKDACILTSDSQRDVKVLEWRPNGGRSLSVG-C  163 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~----------------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~  163 (427)
                      .|+|+.|+|||++||+|+.|+.|.||.....                .+.......+|...|.++.|+|++ .+|+++ -
T Consensus        71 sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~  149 (942)
T KOG0973|consen   71 SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSL  149 (942)
T ss_pred             ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecc
Confidence            8999999999999999999999999999830                123455667899999999999999 566555 5


Q ss_pred             CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------------
Q 014302          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------  231 (427)
Q Consensus       164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------  231 (427)
                      |++|.||+..                         .+..+..+++| ...|..+.|.|-|+++++..-            
T Consensus       150 DnsViiwn~~-------------------------tF~~~~vl~~H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw  203 (942)
T KOG0973|consen  150 DNSVIIWNAK-------------------------TFELLKVLRGH-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW  203 (942)
T ss_pred             cceEEEEccc-------------------------cceeeeeeecc-cccccceEECCccCeeeeecCCceEEEEEcccc
Confidence            6999999987                         34677778888 899999999999999774421            


Q ss_pred             -----EEe------ccCCeEEEEEccCCCEEEEEe-c---CCcEEEEEcCCCCc-cccccCCCCeeEEEECCC-------
Q 014302          232 -----IRR------GFGGLSILKWSPTGDYFFAAK-F---DGTFYLWETNTWTS-EPWSSTSGFVTGATWDPE-------  288 (427)
Q Consensus       232 -----~~~------~~~~v~~~~~sp~g~~l~~~~-~---dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spd-------  288 (427)
                           +..      ....+..+.|||||++|++.. .   -.++.|.+-.+++. ..+.+|.+++..+.|+|-       
T Consensus       204 ~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~  283 (942)
T KOG0973|consen  204 GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK  283 (942)
T ss_pred             eeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc
Confidence                 111      123466788999999999532 2   33588888888886 566699999999999981       


Q ss_pred             -C-------CE-EEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcce
Q 014302          289 -G-------RM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK  359 (427)
Q Consensus       289 -g-------~~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~  359 (427)
                       |       .| +++.++.|+.|-+|.....++.+-.|..           -...|.+|+|+|||-.|.+|+.+      
T Consensus       284 ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l-----------f~~SI~DmsWspdG~~LfacS~D------  346 (942)
T KOG0973|consen  284 NGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL-----------FNKSIVDMSWSPDGFSLFACSLD------  346 (942)
T ss_pred             cCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh-----------hcCceeeeeEcCCCCeEEEEecC------
Confidence             1       11 5556677778888888665554433322           11379999999999999886444      


Q ss_pred             eEEEEEEecc
Q 014302          360 GLIAIYDARR  369 (427)
Q Consensus       360 g~i~vwd~~~  369 (427)
                      |+|.++.++.
T Consensus       347 GtV~~i~Fee  356 (942)
T KOG0973|consen  347 GTVALIHFEE  356 (942)
T ss_pred             CeEEEEEcch
Confidence            5699998864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=1.9e-19  Score=160.07  Aligned_cols=221  Identities=15%  Similarity=0.217  Sum_probs=166.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .+.+++.|+||++||+|+.|..|.||+.++.  +......+|.+.|.+++|.-....+++++.|.++++|+++       
T Consensus       204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~--ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-------  274 (479)
T KOG0299|consen  204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTL--EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-------  274 (479)
T ss_pred             eeEEEEEcCCCcEEEecCCCceEEEecCccc--chhhcccccccceeeeeeecCccceeeeecCCceEEEehh-------
Confidence            7899999999999999999999999999988  6666678999999999999777678888889999999998       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                                        +...+.                          .+.+|...|..+.-..-++.+.+|+.|+++
T Consensus       275 ------------------~~s~ve--------------------------tlyGHqd~v~~IdaL~reR~vtVGgrDrT~  310 (479)
T KOG0299|consen  275 ------------------QLSYVE--------------------------TLYGHQDGVLGIDALSRERCVTVGGRDRTV  310 (479)
T ss_pred             ------------------HhHHHH--------------------------HHhCCccceeeechhcccceEEecccccee
Confidence                              212222                          233456677777777677777788899999


Q ss_pred             EEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEE
Q 014302          261 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW  340 (427)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  340 (427)
                      ++|++.......+.++.+.+.+++|-.+. ++++| +++|.|..|.++.+++.+......-..+......+..+|++++.
T Consensus       311 rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsG-SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~  388 (479)
T KOG0299|consen  311 RLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSG-SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAV  388 (479)
T ss_pred             EEEeccccceeeeeCCCCCeeeEEEeccc-ceeec-cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEe
Confidence            99999766667777899999999998754 45555 66679999999998653321111011111111222248999999


Q ss_pred             CCCCCEEEEEEecCCCcceeEEEEEEeccC-----ceEEEeeeeeee
Q 014302          341 DASGERLAVSYKGGDDIYKGLIAIYDARRT-----PLISLSLIGFIR  382 (427)
Q Consensus       341 sp~g~~La~~~~~~~d~~~g~i~vwd~~~~-----~~~~~~~~~~~~  382 (427)
                      .|...++|+   |+.+   |.|++|.+..+     .+..+...||++
T Consensus       389 i~~sdL~as---GS~~---G~vrLW~i~~g~r~i~~l~~ls~~GfVN  429 (479)
T KOG0299|consen  389 IPGSDLLAS---GSWS---GCVRLWKIEDGLRAINLLYSLSLVGFVN  429 (479)
T ss_pred             cccCceEEe---cCCC---CceEEEEecCCccccceeeecccccEEE
Confidence            999999988   7776   77999999876     223444556655

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.85  E-value=6.9e-20  Score=162.69  Aligned_cols=211  Identities=15%  Similarity=0.282  Sum_probs=157.8

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCC-----cceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~  173 (427)
                      .=++|+|++... .|++++.|++|++||++....     .+...+.+|...|..++|+|....++++.++ +.+.|||+.
T Consensus       179 eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R  258 (422)
T KOG0264|consen  179 EGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR  258 (422)
T ss_pred             cccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcC
Confidence            367899999876 899999999999999987633     3455677899999999999988788877666 889999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE-EE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY-FF  252 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~-l~  252 (427)
                      ..                       .      .                    ........|.+.+.|++|+|-+.+ ||
T Consensus       259 ~~-----------------------~------~--------------------~~~~~~~ah~~~vn~~~fnp~~~~ilA  289 (422)
T KOG0264|consen  259 SN-----------------------T------S--------------------KPSHSVKAHSAEVNCVAFNPFNEFILA  289 (422)
T ss_pred             CC-----------------------C------C--------------------CCcccccccCCceeEEEeCCCCCceEE
Confidence            10                       0      0                    011234568889999999997765 55


Q ss_pred             EEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC---ccccccccccccce
Q 014302          253 AAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS---LDAHLLPVDLPDIV  327 (427)
Q Consensus       253 ~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~  327 (427)
                      +|+.|++|++||+|+...  ..+.+|...|..|.|||....++.+++.++.+.+|++..-...   -.+...|.    ..
T Consensus       290 T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp----El  365 (422)
T KOG0264|consen  290 TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP----EL  365 (422)
T ss_pred             eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCc----ce
Confidence            999999999999998876  4555999999999999988777666667778888887763111   11111111    11


Q ss_pred             eec---cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          328 SLT---GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       328 ~~~---~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      .+.   |...|..+.|+|+..+++++  ..+|   +.+.||++..
T Consensus       366 lF~HgGH~~kV~DfsWnp~ePW~I~S--vaeD---N~LqIW~~s~  405 (422)
T KOG0264|consen  366 LFIHGGHTAKVSDFSWNPNEPWTIAS--VAED---NILQIWQMAE  405 (422)
T ss_pred             eEEecCcccccccccCCCCCCeEEEE--ecCC---ceEEEeeccc
Confidence            222   33479999999999998887  6666   6799999863

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=5.2e-19  Score=150.39  Aligned_cols=301  Identities=13%  Similarity=0.162  Sum_probs=171.5

Q ss_pred             ccCCCCCCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-ceeeccC-CcCCeeEEEEccCCCceEEEecC
Q 014302           89 LHPDHVHLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACILTSD-SQRDVKVLEWRPNGGRSLSVGCK  164 (427)
Q Consensus        89 ~~p~~~~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~  164 (427)
                      .+|-....|.+|  .|++++|+.||+.||+++.|++|+||++..-..+ ...+... .-+.-+.++|+||...+++....
T Consensus        74 ~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~  153 (420)
T KOG2096|consen   74 VHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR  153 (420)
T ss_pred             ccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc
Confidence            344456667777  8999999999999999999999999998765111 1111111 12245788999999666554434


Q ss_pred             -CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhccc--------CCCceeeeEeCCCCCCcccCceEEec
Q 014302          165 -GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--------NGEQITALSWGPDGRFPGLGTPIRRG  235 (427)
Q Consensus       165 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~spdg~~l~~~~~~~~~  235 (427)
                       +++++|.+.+...-....+.-......+++.-.-.   +..+...        ......-+-|+-.|+.|.   .+...
T Consensus       154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~---~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~---~idtn  227 (420)
T KOG2096|consen  154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVD---IINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ---SIDTN  227 (420)
T ss_pred             CCEEEEEEeeecccCCCCcccccccccccchhcccc---eEEEeecCCceEEEEecCCCcEEEEecCCceee---eeccc
Confidence             78999987631110000000000000000000000   0000000        000111233433333333   11122


Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc---------cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                      ....+..+.||+|++|++++.--.|++|.+--.+.         ..+.+|...|..++||++.+.+++.+.++    .|+
T Consensus       228 q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG----~wr  303 (420)
T KOG2096|consen  228 QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG----KWR  303 (420)
T ss_pred             cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC----cEE
Confidence            33456778999999999999999999998743321         12338999999999999999999886555    555


Q ss_pred             eCCCCCCcccccccccccccee--eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302          307 FASKPPSLDAHLLPVDLPDIVS--LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP  384 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~  384 (427)
                      +|+....++....|.-+.....  ...++....++.+|.|+.||+++ |+ +     |++|..++++.+...    -...
T Consensus       304 iwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs-~-----l~~~~se~g~~~~~~----e~~h  372 (420)
T KOG2096|consen  304 IWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GS-D-----LKVFASEDGKDYPEL----EDIH  372 (420)
T ss_pred             EeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CC-c-----eEEEEcccCccchhH----HHhh
Confidence            6654333333333322222211  11223445899999999999963 32 2     999999887654111    0111


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEE
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT  416 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~  416 (427)
                      ..  ...|++|.++   |..++.| .+-.+.+
T Consensus       373 ~~--~Is~is~~~~---g~~~atc-Gdr~vrv  398 (420)
T KOG2096|consen  373 ST--TISSISYSSD---GKYIATC-GDRYVRV  398 (420)
T ss_pred             cC--ceeeEEecCC---CcEEeee-cceeeee
Confidence            22  2458888885   6556655 3444443

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.85  E-value=5.5e-19  Score=155.96  Aligned_cols=220  Identities=14%  Similarity=0.256  Sum_probs=169.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .+.++...|....+++|+.|..+.++|....  +...+..+|...|+++.|+|+...++....+..|+||.....     
T Consensus       221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-----  293 (506)
T KOG0289|consen  221 GITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-----  293 (506)
T ss_pred             CeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-----
Confidence            7889999988889999999999999988777  677788899999999999999855555556788999998621     


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc--------------cCceEEecc-----CCeEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG--------------LGTPIRRGF-----GGLSI  241 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~--------------~~~~~~~~~-----~~v~~  241 (427)
                                          ......+.| ..+|+.+..+|.|+++.              .+..+..+.     -.+++
T Consensus       294 --------------------s~~~~~~~h-~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts  352 (506)
T KOG0289|consen  294 --------------------SEPTSSRPH-EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTS  352 (506)
T ss_pred             --------------------cCccccccc-cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEE
Confidence                                122223344 78899999999998843              233333322     24889


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      .+|+|||..|.+|..|+.|+|||+.+... ..+.+|.++|..++|+.+|.+|++++.++ .+++|++..... ++     
T Consensus       353 ~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~-~V~lwDLRKl~n-~k-----  425 (506)
T KOG0289|consen  353 AAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG-SVKLWDLRKLKN-FK-----  425 (506)
T ss_pred             eeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC-eEEEEEehhhcc-cc-----
Confidence            99999999999999999999999998876 56679999999999999999999887666 688888876421 10     


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                           ...+.....+.+++|++.|++|+.   ++++     |+||-..
T Consensus       426 -----t~~l~~~~~v~s~~fD~SGt~L~~---~g~~-----l~Vy~~~  460 (506)
T KOG0289|consen  426 -----TIQLDEKKEVNSLSFDQSGTYLGI---AGSD-----LQVYICK  460 (506)
T ss_pred             -----eeeccccccceeEEEcCCCCeEEe---ecce-----eEEEEEe
Confidence                 011112226899999999999999   4555     6666554

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.85  E-value=2.6e-20  Score=160.73  Aligned_cols=281  Identities=14%  Similarity=0.161  Sum_probs=188.7

Q ss_pred             CCCCC--ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302           96 LLPEV--DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (427)
Q Consensus        96 ~l~~~--~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~  172 (427)
                      -|.+|  .|.|++=+|.. ..+|+|+.||.|+|||+...  ........|.+-|..|++.. + .++.+|.|.+|+.|.+
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR--~~~~~f~AH~G~V~Gi~v~~-~-~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR--ECIRTFKAHEGLVRGICVTQ-T-SFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehhhh--hhhheeecccCceeeEEecc-c-ceEEecCCcceeeeec
Confidence            34777  89999999988 68999999999999999887  55666678999999999986 3 7999999999999998


Q ss_pred             cCCCCccccccCcccccccccC--CCC---cceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC
Q 014302          173 SYPGNAASVRSGAASFLGALSR--GPG---TRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT  247 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~  247 (427)
                      +-+  +...-.+.. ....+..  ..+   ..-..+...+.....++..+.|               ....+.++.|+|-
T Consensus       137 ~~~--p~~tilg~s-~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw---------------G~Dti~svkfNpv  198 (433)
T KOG0268|consen  137 DGP--PLHTILGKS-VYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW---------------GADSISSVKFNPV  198 (433)
T ss_pred             cCC--cceeeeccc-cccccccccccccccccCceeeecccccCCccceeec---------------CCCceeEEecCCC
Confidence            621  111111100 0000000  000   0000111122222334444444               3456889999998


Q ss_pred             CCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc
Q 014302          248 GDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI  326 (427)
Q Consensus       248 g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      ...|+ ++..|+.|.+||++...+.........-..++|+|++-. +++++++..++.+++......+..|         
T Consensus       199 ETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafn-F~~a~ED~nlY~~DmR~l~~p~~v~---------  268 (433)
T KOG0268|consen  199 ETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFN-FVAANEDHNLYTYDMRNLSRPLNVH---------  268 (433)
T ss_pred             cchheeeeccCCceEEEecccCCccceeeeeccccceecCccccc-eeeccccccceehhhhhhcccchhh---------
Confidence            87655 777999999999999998666656667789999995544 4456777688888877643222111         


Q ss_pred             eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302          327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS  406 (427)
Q Consensus       327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~  406 (427)
                        ..+...|.+|+|||.|+-+++   |+-|   .+|+||.++.+....+-.    .-..+  .+.|+.|.-+   ..-+.
T Consensus       269 --~dhvsAV~dVdfsptG~Efvs---gsyD---ksIRIf~~~~~~SRdiYh----tkRMq--~V~~Vk~S~D---skyi~  331 (433)
T KOG0268|consen  269 --KDHVSAVMDVDFSPTGQEFVS---GSYD---KSIRIFPVNHGHSRDIYH----TKRMQ--HVFCVKYSMD---SKYII  331 (433)
T ss_pred             --cccceeEEEeccCCCcchhcc---cccc---ceEEEeecCCCcchhhhh----Hhhhh--eeeEEEEecc---ccEEE
Confidence              112338899999999999998   7877   679999997655432110    00112  3668888765   34578


Q ss_pred             EEeeCceEEEEeccccCCC
Q 014302          407 VCWSSGFCCTYPLIFRSHL  425 (427)
Q Consensus       407 v~~~~g~i~~~~~~~~~~~  425 (427)
                      .|..+|.|.+|--+=+.+|
T Consensus       332 SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  332 SGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             ecCCCcceeeeecchhhhc
Confidence            8889999999987655443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.9e-20  Score=152.49  Aligned_cols=238  Identities=17%  Similarity=0.262  Sum_probs=165.8

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCce-EEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~-la~g~~~~i~iw~~~~~~~~  178 (427)
                      .+..++|+++.. .+++++.||+++|||+... ..+......|...|.++.|++...+. |.++-|++|++|+.+.+   
T Consensus        62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~---  137 (311)
T KOG0277|consen   62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP---  137 (311)
T ss_pred             ceeEeeecCCCcceEEEEecCceEEEeccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC---
Confidence            678999999765 7888999999999996544 34666777899999999999865454 44555699999998721   


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CEEEEEecC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFD  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d  257 (427)
                                            ..++                          .+++|..-|+..+|||.. +.+++++.|
T Consensus       138 ----------------------~Sv~--------------------------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd  169 (311)
T KOG0277|consen  138 ----------------------NSVQ--------------------------TFNGHNSCIYQAAFSPHIPNLFASASGD  169 (311)
T ss_pred             ----------------------cceE--------------------------eecCCccEEEEEecCCCCCCeEEEccCC
Confidence                                  1122                          233456678888888855 466699999


Q ss_pred             CcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC---CccccccccccccceeeccCC
Q 014302          258 GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP---SLDAHLLPVDLPDIVSLTGSQ  333 (427)
Q Consensus       258 g~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  333 (427)
                      +++++||++.... ..+..|...+.++.|+.-...++++++.++.++.|++.+.+.   .+.+|.              -
T Consensus       170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~--------------~  235 (311)
T KOG0277|consen  170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHG--------------L  235 (311)
T ss_pred             ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCc--------------e
Confidence            9999999987654 455689999999999998877777777788999999988532   222333              3


Q ss_pred             ceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302          334 GIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       334 ~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g  412 (427)
                      .|+.+.|||... .||+   .+-|   -+++|||...+....    +.+.  ...+-+..+.|.+. ..+.+..+|| |+
T Consensus       236 AVRkvk~Sph~~~lLaS---asYD---mT~riw~~~~~ds~~----e~~~--~HtEFv~g~Dws~~-~~~~vAs~gW-De  301 (311)
T KOG0277|consen  236 AVRKVKFSPHHASLLAS---ASYD---MTVRIWDPERQDSAI----ETVD--HHTEFVCGLDWSLF-DPGQVASTGW-DE  301 (311)
T ss_pred             EEEEEecCcchhhHhhh---cccc---ceEEecccccchhhh----hhhh--ccceEEeccccccc-cCceeeeccc-cc
Confidence            899999998765 4555   5555   569999987543210    0110  11111223444443 3455666665 56


Q ss_pred             eEEEEe
Q 014302          413 FCCTYP  418 (427)
Q Consensus       413 ~i~~~~  418 (427)
                      .+.+|+
T Consensus       302 ~l~Vw~  307 (311)
T KOG0277|consen  302 LLYVWN  307 (311)
T ss_pred             ceeeec
Confidence            677765

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.85  E-value=1.5e-19  Score=152.43  Aligned_cols=214  Identities=14%  Similarity=0.195  Sum_probs=161.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~  179 (427)
                      +|..+.|.+|+..|++++.|.+++.||..++  +.......|..-|+++.-+.-|..++.++++ ++++|||+.      
T Consensus        92 AVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG--~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R------  163 (338)
T KOG0265|consen   92 AVMELHGMRDGSHILSCGTDKTVRGWDAETG--KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR------  163 (338)
T ss_pred             eeEeeeeccCCCEEEEecCCceEEEEecccc--eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeec------
Confidence            8999999999999999999999999999998  4555556788889998866667778888877 999999997      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSIL  242 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~  242 (427)
                                         .-.+++.+.  ...+++++.|..++..+.++.                 .+++|...|+.+
T Consensus       164 -------------------~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~l  222 (338)
T KOG0265|consen  164 -------------------KKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGL  222 (338)
T ss_pred             -------------------ccchhhccc--cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeE
Confidence                               111222221  255677777777665533221                 356788999999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCcccc-----c----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-----S----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-  312 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-----~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-  312 (427)
                      ..+|+|.++.+-+.|.++++||++.......     .    ........++|+|+++.+.+++.+. .+++|+...... 
T Consensus       223 sls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-~vyvwd~~~r~~l  301 (338)
T KOG0265|consen  223 SLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-FVYVWDTTSRRIL  301 (338)
T ss_pred             EeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc-eEEEeecccccEE
Confidence            9999999999999999999999987654221     1    2334567899999999998765444 777777666422 


Q ss_pred             -CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEE
Q 014302          313 -SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAI  364 (427)
Q Consensus       313 -~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~v  364 (427)
                       .+.||.              +.|+.++|+|....|.++   +.|   ++|++
T Consensus       302 yklpGh~--------------gsvn~~~Fhp~e~iils~---~sd---k~i~l  334 (338)
T KOG0265|consen  302 YKLPGHY--------------GSVNEVDFHPTEPIILSC---SSD---KTIYL  334 (338)
T ss_pred             EEcCCcc--------------eeEEEeeecCCCcEEEEe---ccC---ceeEe
Confidence             233443              388999999999999985   445   45765

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.84  E-value=1.3e-19  Score=163.14  Aligned_cols=231  Identities=16%  Similarity=0.345  Sum_probs=158.4

Q ss_pred             CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-------c---ceeeccCCcCCeeEEEEccCCCc-eEEEecCCe
Q 014302           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-------D---ACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGG  166 (427)
Q Consensus        98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-------~---~~~~~~~~~~~v~~l~~sp~~~~-~la~g~~~~  166 (427)
                      ..|.|++++|++.|..|++.+....++|+|-+....       +   -.....+|...++|.+|+|+.+. +|.++.|++
T Consensus       213 E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgt  292 (641)
T KOG0772|consen  213 ETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGT  292 (641)
T ss_pred             cccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCc
Confidence            356899999999999888888888999988765411       0   11233579999999999998755 566667799


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEe-ehhcccCCCceeeeEeCCCCCCcccCce--------------
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV-DFLRSQNGEQITALSWGPDGRFPGLGTP--------------  231 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~~--------------  231 (427)
                      ++||+++....                     +...+ ....+....+++.++|+|||++++.+-.              
T Consensus       293 lRiWdv~~~k~---------------------q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v  351 (641)
T KOG0772|consen  293 LRIWDVNNTKS---------------------QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV  351 (641)
T ss_pred             EEEEecCCchh---------------------heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccc
Confidence            99999983221                     11111 1122334667889999999999775421              


Q ss_pred             ------EEeccC--CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc--c--cCCCCeeEEEECCCCCEEEEEEcCC
Q 014302          232 ------IRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--S--STSGFVTGATWDPEGRMILLAFAGS  299 (427)
Q Consensus       232 ------~~~~~~--~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~--~~~~~v~~v~~spdg~~l~~~~~~~  299 (427)
                            -..|..  .|++++||+||++|++-+.|+++++||++..+....  .  .....-+.++|||+.+.|++|.+-.
T Consensus       352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~  431 (641)
T KOG0772|consen  352 RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAP  431 (641)
T ss_pred             ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccccc
Confidence                  123554  899999999999999999999999999998775322  2  3445667899999999999876533


Q ss_pred             c--eeeeeeeCCCCCCccccccccccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEE
Q 014302          300 L--TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY  365 (427)
Q Consensus       300 ~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vw  365 (427)
                      .  .-..+.+.+..          .+.....+. ....|..+.|+|.=+.|.+   ++.|   |+++||
T Consensus       432 ~~~~~g~L~f~d~~----------t~d~v~ki~i~~aSvv~~~WhpkLNQi~~---gsgd---G~~~vy  484 (641)
T KOG0772|consen  432 NGMTAGTLFFFDRM----------TLDTVYKIDISTASVVRCLWHPKLNQIFA---GSGD---GTAHVY  484 (641)
T ss_pred             CCCCCceEEEEecc----------ceeeEEEecCCCceEEEEeecchhhheee---ecCC---CceEEE
Confidence            1  11122222220          011111111 1337889999998888877   5666   668875

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=1.9e-19  Score=164.82  Aligned_cols=292  Identities=16%  Similarity=0.295  Sum_probs=189.3

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCc-eEEEecCCeEEEEecc
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPS  173 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~la~g~~~~i~iw~~~  173 (427)
                      ..+|  .|++|+.+|.|.+||+|+.||+|+||.+.++   .+.......+.|.|++|+|.+.. +||++....+.|-+..
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg---Rcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG---RCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc---eEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            3445  8999999999999999999999999999988   44444456678999999998754 5677766556655543


Q ss_pred             CCCCccc------cccCcc-----cccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-------------
Q 014302          174 YPGNAAS------VRSGAA-----SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-------------  229 (427)
Q Consensus       174 ~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-------------  229 (427)
                      ++.....      +...+.     .....+.+....+...-..+...+...|..+.|+..|.++++-             
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQ  552 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQ  552 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEe
Confidence            3211000      000000     0001111111111110000111236778899999999996522             


Q ss_pred             -------ceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302          230 -------TPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLT  301 (427)
Q Consensus       230 -------~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~  301 (427)
                             .+++...+.+.++.|+|...+|++++ ...|+|||+..... .........|.+++.+|.|..|++++.+. .
T Consensus       553 LSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~-k  630 (733)
T KOG0650|consen  553 LSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK-K  630 (733)
T ss_pred             cccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC-e
Confidence                   22344557789999999999999887 68899999977554 33446778899999999999999876555 4


Q ss_pred             eeeeeeCC--CC-CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe------ccCce
Q 014302          302 LGSIHFAS--KP-PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA------RRTPL  372 (427)
Q Consensus       302 i~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~------~~~~~  372 (427)
                      +..+++.-  ++ .++.-|              ...+++|+|++.-.++|+   +++|   |++.||.-      -.+++
T Consensus       631 ~~WfDldlsskPyk~lr~H--------------~~avr~Va~H~ryPLfas---~sdD---gtv~Vfhg~VY~Dl~qnpl  690 (733)
T KOG0650|consen  631 MCWFDLDLSSKPYKTLRLH--------------EKAVRSVAFHKRYPLFAS---GSDD---GTVIVFHGMVYNDLLQNPL  690 (733)
T ss_pred             eEEEEcccCcchhHHhhhh--------------hhhhhhhhhccccceeee---ecCC---CcEEEEeeeeehhhhcCCc
Confidence            44444432  21 122223              337899999999999999   6666   66888743      22222


Q ss_pred             EEEeeeeeeeCCC--CCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          373 ISLSLIGFIRGPG--DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       373 ~~~~~~~~~~~~~--~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                        +-|...+++..  .....+.+.|||.   ..+|-.+.+||.|.+|+
T Consensus       691 --iVPlK~L~gH~~~~~~gVLd~~wHP~---qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  691 --IVPLKRLRGHEKTNDLGVLDTIWHPR---QPWLFSAGADGTIRLFT  733 (733)
T ss_pred             --eEeeeeccCceeecccceEeecccCC---CceEEecCCCceEEeeC
Confidence              23445555542  3344667779997   44555555999999985

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=8.4e-20  Score=149.74  Aligned_cols=228  Identities=17%  Similarity=0.288  Sum_probs=163.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-cceeeccCCcCCeeEEEEcc--CCCceEEEecC-CeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRP--NGGRSLSVGCK-GGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp--~~~~~la~g~~-~~i~iw~~~~~~  176 (427)
                      -|..+...--|.+|||++.|++|+|+....... .......+|.++|..++|..  .| .+||+++. +.|.||.-.   
T Consensus        13 ~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~---   88 (299)
T KOG1332|consen   13 MIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEE---   88 (299)
T ss_pred             hhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecC---
Confidence            456666777899999999999999999887743 55666789999999999974  55 78888765 999999876   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC--CcccC--------------------ceEEe
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--FPGLG--------------------TPIRR  234 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~l~~~--------------------~~~~~  234 (427)
                                          +++|........| ...|++++|.|.+-  .|+++                    .....
T Consensus        89 --------------------~g~w~k~~e~~~h-~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a  147 (299)
T KOG1332|consen   89 --------------------NGRWTKAYEHAAH-SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA  147 (299)
T ss_pred             --------------------CCchhhhhhhhhh-cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence                                3344444444444 77888888877432  23222                    12345


Q ss_pred             ccCCeEEEEEccC---C-----------CEEEEEecCCcEEEEEcCCCC--c-cccccCCCCeeEEEECCCC----CEEE
Q 014302          235 GFGGLSILKWSPT---G-----------DYFFAAKFDGTFYLWETNTWT--S-EPWSSTSGFVTGATWDPEG----RMIL  293 (427)
Q Consensus       235 ~~~~v~~~~~sp~---g-----------~~l~~~~~dg~v~iwd~~~~~--~-~~~~~~~~~v~~v~~spdg----~~l~  293 (427)
                      |.-++++++|.|-   |           +.|++|+.|..|+||+..+.+  . ..+.+|...|..++|.|.-    .+|+
T Consensus       148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            8889999999986   4           569999999999999988753  2 3355999999999999964    4566


Q ss_pred             EEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          294 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       294 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      + ++.++++.+|.........+.... -+        -...+..++||..|..||++   +.|   ..|.+|.-..
T Consensus       228 S-~SqDg~viIwt~~~e~e~wk~tll-~~--------f~~~~w~vSWS~sGn~LaVs---~Gd---Nkvtlwke~~  287 (299)
T KOG1332|consen  228 S-CSQDGTVIIWTKDEEYEPWKKTLL-EE--------FPDVVWRVSWSLSGNILAVS---GGD---NKVTLWKENV  287 (299)
T ss_pred             E-ecCCCcEEEEEecCccCccccccc-cc--------CCcceEEEEEeccccEEEEe---cCC---cEEEEEEeCC
Confidence            5 456667777766543222221111 01        12268999999999999995   333   4599998653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=5.2e-19  Score=169.45  Aligned_cols=259  Identities=14%  Similarity=0.175  Sum_probs=177.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      ..+.|+|.|+|.+|.+++.|+.|++|+......++..+. .+...|.+++-...  +++++..+++|.+|.+... .   
T Consensus        15 G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~s~--~f~~~s~~~tv~~y~fps~-~---   87 (933)
T KOG1274|consen   15 GLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACYSN--HFLTGSEQNTVLRYKFPSG-E---   87 (933)
T ss_pred             ceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeeccc--ceEEeeccceEEEeeCCCC-C---
Confidence            468899999999999999999999999776632333322 26667877776533  5666667799999998711 1   


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~  243 (427)
                                            ...+-.+...++.+++++-+|++++.|.                 .+++|.++|.++.
T Consensus        88 ----------------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~  145 (933)
T KOG1274|consen   88 ----------------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLS  145 (933)
T ss_pred             ----------------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeee
Confidence                                  0111122366788999999999876442                 3677999999999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCccccc---------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CC
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PP  312 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~  312 (427)
                      |+|.+.+||+.+.||.|++||+.++......         .....+..++|+|+|..+++...++ .+.+++..+.  .-
T Consensus       146 ~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~we~~f  224 (933)
T KOG1274|consen  146 YDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKGWELQF  224 (933)
T ss_pred             EcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCCceehe
Confidence            9999999999999999999999988763222         1245678899999976666655554 4444443332  11


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  392 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (427)
                      .+..            ..++..+..+.|+|+|+|||++   +-+   |.|.|||+++...           ........|
T Consensus       225 ~Lr~------------~~~ss~~~~~~wsPnG~YiAAs---~~~---g~I~vWnv~t~~~-----------~~~~~~Vc~  275 (933)
T KOG1274|consen  225 KLRD------------KLSSSKFSDLQWSPNGKYIAAS---TLD---GQILVWNVDTHER-----------HEFKRAVCC  275 (933)
T ss_pred             eecc------------cccccceEEEEEcCCCcEEeee---ccC---CcEEEEecccchh-----------ccccceeEE
Confidence            1111            1122248999999999999994   444   5699999987332           112223668


Q ss_pred             EEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          393 FSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       393 ~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      ++|+|+..   -+++-...|...+++-+-
T Consensus       276 ~aw~p~~n---~it~~~~~g~~~~~~~iv  301 (933)
T KOG1274|consen  276 EAWKPNAN---AITLITALGTLGVSPAIV  301 (933)
T ss_pred             EecCCCCC---eeEEEeeccccccChhhc
Confidence            88998743   355555566555555433

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.84  E-value=4.7e-19  Score=153.82  Aligned_cols=242  Identities=22%  Similarity=0.351  Sum_probs=162.7

Q ss_pred             CCEEEEEeCCCeEEEEEccCC--------------CCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCC
Q 014302          111 KHIVAFISGSTQVIVRDYEDS--------------GKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYP  175 (427)
Q Consensus       111 g~~lat~~~d~~v~vwd~~~~--------------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~  175 (427)
                      ..+.|+-+..|.|+||++...              ...++....+|...=+.|.|||-....|++| +.+.|++|...  
T Consensus       165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~--  242 (440)
T KOG0302|consen  165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS--  242 (440)
T ss_pred             cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec--
Confidence            347777788999999998542              2234455567888889999999543445555 55889999886  


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE-EEEE
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY-FFAA  254 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~-l~~~  254 (427)
                             ++              .|.                         ....++..|...|-.++|||..+. |++|
T Consensus       243 -------~g--------------~W~-------------------------vd~~Pf~gH~~SVEDLqWSptE~~vfaSc  276 (440)
T KOG0302|consen  243 -------TG--------------SWK-------------------------VDQRPFTGHTKSVEDLQWSPTEDGVFASC  276 (440)
T ss_pred             -------cC--------------cee-------------------------ecCccccccccchhhhccCCccCceEEee
Confidence                   11              222                         123355668889999999998775 5599


Q ss_pred             ecCCcEEEEEcCCCCc---cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302          255 KFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  331 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~---~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (427)
                      +.||+|+|||+|++..   .....|.+.|..+.|+.+-.+|++| .++|++.+|++..-+..     .|+    .....|
T Consensus       277 S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG-~DdGt~~iwDLR~~~~~-----~pV----A~fk~H  346 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASG-GDDGTLSIWDLRQFKSG-----QPV----ATFKYH  346 (440)
T ss_pred             ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeec-CCCceEEEEEhhhccCC-----Ccc----eeEEec
Confidence            9999999999999854   3445899999999999988867654 66778888888774321     111    233345


Q ss_pred             CCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCce------------EEEeee-eeee-CCCCCCCceeEEec
Q 014302          332 SQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPL------------ISLSLI-GFIR-GPGDNPKPVAFSFH  396 (427)
Q Consensus       332 ~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~------------~~~~~~-~~~~-~~~~~~~~~~~~f~  396 (427)
                      ..+|+++.|+|... .||+   ++.|   ..|.|||+....-            ..+.|+ =|+- |..+   .-.+.||
T Consensus       347 k~pItsieW~p~e~s~iaa---sg~D---~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke---~KevhWH  417 (440)
T KOG0302|consen  347 KAPITSIEWHPHEDSVIAA---SGED---NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKE---VKEVHWH  417 (440)
T ss_pred             cCCeeEEEeccccCceEEe---ccCC---CcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhH---hhhheec
Confidence            56999999998654 4545   4555   4599999954221            111111 1222 2111   2357788


Q ss_pred             cCCCCCceeEEEeeCceEEEEeccc
Q 014302          397 DKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       397 ~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      +.. .|.++..+ -+|.-.|+++.+
T Consensus       418 ~Qi-PG~lvsTa-~dGfnVfktIsv  440 (440)
T KOG0302|consen  418 RQI-PGLLVSTA-IDGFNVFKTISV  440 (440)
T ss_pred             cCC-CCeEEEec-ccceeEEEeccC
Confidence            864 36666666 788888888743

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.84  E-value=7.6e-20  Score=150.44  Aligned_cols=204  Identities=14%  Similarity=0.181  Sum_probs=157.3

Q ss_pred             CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (427)
Q Consensus        98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~  177 (427)
                      ..|-|.+++|+.|.++|++|+.+..+||+|++... .+.....+|.+.|..+-|....+.+|.++.+++|++||..    
T Consensus        99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r----  173 (334)
T KOG0278|consen   99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR----  173 (334)
T ss_pred             hhheeeeEEecccchhhhccchHHHhhhhhccCCC-CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec----
Confidence            34589999999999999999999999999998773 3455667899999999999877678888778999999997    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                           ++                ..++           .+.                ...+|.++.++++|++|.++. .
T Consensus       174 -----Tg----------------t~v~-----------sL~----------------~~s~VtSlEvs~dG~ilTia~-g  204 (334)
T KOG0278|consen  174 -----TG----------------TEVQ-----------SLE----------------FNSPVTSLEVSQDGRILTIAY-G  204 (334)
T ss_pred             -----cC----------------cEEE-----------EEe----------------cCCCCcceeeccCCCEEEEec-C
Confidence                 22                1122           111                134688999999999887654 7


Q ss_pred             CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302          258 GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK  337 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  337 (427)
                      +.|..||..+....+-......|.+..++|+...+++ ++++..++.+++.....          +.. ....+.++|.+
T Consensus       205 ssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa-Gged~~~~kfDy~TgeE----------i~~-~nkgh~gpVhc  272 (334)
T KOG0278|consen  205 SSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA-GGEDFKVYKFDYNTGEE----------IGS-YNKGHFGPVHC  272 (334)
T ss_pred             ceeEEeccccccceeeccCccccccccccCCCceEEe-cCcceEEEEEeccCCce----------eee-cccCCCCceEE
Confidence            8899999998887666566678899999998866665 45665777777776411          000 01234558999


Q ss_pred             EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      |.|+|||...|+   |++|   |+|+||.+..++..
T Consensus       273 VrFSPdGE~yAs---GSED---GTirlWQt~~~~~~  302 (334)
T KOG0278|consen  273 VRFSPDGELYAS---GSED---GTIRLWQTTPGKTY  302 (334)
T ss_pred             EEECCCCceeec---cCCC---ceEEEEEecCCCch
Confidence            999999999999   9999   88999999766554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=9.3e-19  Score=142.89  Aligned_cols=227  Identities=15%  Similarity=0.152  Sum_probs=163.1

Q ss_pred             CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCC
Q 014302           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  177 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~  177 (427)
                      +++|..++.+.|...+++++.|..+.+||++++  +......+|.+.|+.++|+.+. .++++|+ |..+++||..    
T Consensus        59 G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG--kv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCR----  131 (307)
T KOG0316|consen   59 GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG--KVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCR----  131 (307)
T ss_pred             CceeeeccccccccccccCCCCceEEEEEcccC--eeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcc----
Confidence            348999999999999999999999999999998  6666778899999999999888 6777664 6999999997    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                           ..              ...+++.+...                          ..+|.++..  .+..|++|+.|
T Consensus       132 -----S~--------------s~ePiQildea--------------------------~D~V~Si~v--~~heIvaGS~D  164 (307)
T KOG0316|consen  132 -----SR--------------SFEPIQILDEA--------------------------KDGVSSIDV--AEHEIVAGSVD  164 (307)
T ss_pred             -----cC--------------CCCccchhhhh--------------------------cCceeEEEe--cccEEEeeccC
Confidence                 11              22344433322                          345666655  45679999999


Q ss_pred             CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCccccccccccccceeeccCCce
Q 014302          258 GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                      |++|.||++.++... .....+|++++|++||+.++.++-+. +++.++-...  ...+++|...-            --
T Consensus       165 GtvRtydiR~G~l~s-Dy~g~pit~vs~s~d~nc~La~~l~s-tlrLlDk~tGklL~sYkGhkn~e------------yk  230 (307)
T KOG0316|consen  165 GTVRTYDIRKGTLSS-DYFGHPITSVSFSKDGNCSLASSLDS-TLRLLDKETGKLLKSYKGHKNME------------YK  230 (307)
T ss_pred             CcEEEEEeecceeeh-hhcCCcceeEEecCCCCEEEEeeccc-eeeecccchhHHHHHhcccccce------------ee
Confidence            999999999887522 13466899999999999998765444 5655554443  12445554311            22


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEE
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC  408 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~  408 (427)
                      ..++++.....+++   |++|   |.|++||+.....+...+.      ........+++||.-   ..+.++
T Consensus       231 ldc~l~qsdthV~s---gSED---G~Vy~wdLvd~~~~sk~~~------~~~v~v~dl~~hp~~---~~f~~A  288 (307)
T KOG0316|consen  231 LDCCLNQSDTHVFS---GSED---GKVYFWDLVDETQISKLSV------VSTVIVTDLSCHPTM---DDFITA  288 (307)
T ss_pred             eeeeecccceeEEe---ccCC---ceEEEEEeccceeeeeecc------CCceeEEeeecccCc---cceeEe
Confidence            45677777777877   8888   8899999988776644321      122235688999973   335555

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=2.2e-18  Score=146.07  Aligned_cols=235  Identities=14%  Similarity=0.167  Sum_probs=166.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.++.|+|.++.|++++.||++++|++...   .......|..++.+++|.++. ..++.+.++.|+.+|++       
T Consensus        15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---~l~~~~~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln-------   83 (323)
T KOG1036|consen   15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---SLKLKFKHGAPLLDCAFADES-TIVTGGLDGQVRRYDLN-------   83 (323)
T ss_pred             ceeeEEEcCcCCcEEEEeccCcEEEEeccch---hhhhheecCCceeeeeccCCc-eEEEeccCceEEEEEec-------
Confidence            6899999999999999999999999999876   445556788999999999876 77888888999999998       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                        ++                                           ....+..|..++.++.+++-...+++|++|++|
T Consensus        84 --~~-------------------------------------------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~i  118 (323)
T KOG1036|consen   84 --TG-------------------------------------------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTI  118 (323)
T ss_pred             --CC-------------------------------------------cceeeccCCCceEEEEeeccCCeEEEcccCccE
Confidence              21                                           111344578899999999888899999999999


Q ss_pred             EEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-------Cccccc-----cc--------
Q 014302          261 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-------SLDAHL-----LP--------  320 (427)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-------~~~~~~-----~~--------  320 (427)
                      ++||.+.............|.++..+  |..|++|+.+. .+.+|++.+...       .++-..     .|        
T Consensus       119 k~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~~~r-~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~s  195 (323)
T KOG1036|consen  119 KFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGTSDR-KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVS  195 (323)
T ss_pred             EEEeccccccccccccCceEEEEecc--CCEEEEeecCc-eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEE
Confidence            99999975544444445577777654  67788776666 666776665311       111000     00        


Q ss_pred             -------ccc---c----cce--eecc----C-----CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          321 -------VDL---P----DIV--SLTG----S-----QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       321 -------~~~---~----~~~--~~~~----~-----~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                             ++.   .    +..  ...|    .     -+|++|+|+|-...||+   |+.|   |.|.+||+...+.+..
T Consensus       196 SieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT---gGsD---G~V~~Wd~~~rKrl~q  269 (323)
T KOG1036|consen  196 SIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT---GGSD---GIVNIWDLFNRKRLKQ  269 (323)
T ss_pred             eecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe---cCCC---ceEEEccCcchhhhhh
Confidence                   000   0    000  0011    1     17999999999999999   7878   8899999988765411


Q ss_pred             eeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302          376 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS  410 (427)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~  410 (427)
                             -+....+...++|.-   .|.+|||+.+
T Consensus       270 -------~~~~~~SI~slsfs~---dG~~LAia~s  294 (323)
T KOG1036|consen  270 -------LAKYETSISSLSFSM---DGSLLAIASS  294 (323)
T ss_pred             -------ccCCCCceEEEEecc---CCCeEEEEec
Confidence                   122223355677754   4999999976

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=2.8e-19  Score=170.20  Aligned_cols=251  Identities=16%  Similarity=0.182  Sum_probs=159.6

Q ss_pred             CCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccC----------cccccccccCCCCcceeEeehhccc
Q 014302          141 DSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSG----------AASFLGALSRGPGTRWTLVDFLRSQ  209 (427)
Q Consensus       141 ~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~  209 (427)
                      .|.+.|+++.||+|| ++||+|+. +.|+||.+.... ......+          ..+...+..-..+..-......+. 
T Consensus       265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e-~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~-  341 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESE-RMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK-  341 (712)
T ss_pred             ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccc-hhcccccccchhhhhhhhccccCcccccccccccccccccc-
Confidence            699999999999999 77777765 889999986211 0000000          000000000000000000000000 


Q ss_pred             CCCceeeeEeCCCCCCcccCc---eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEEC
Q 014302          210 NGEQITALSWGPDGRFPGLGT---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWD  286 (427)
Q Consensus       210 ~~~~v~~~~~spdg~~l~~~~---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~s  286 (427)
                       .....+ ..-|+........   .+.+|.+.|..++||.+ .+|++++.|++||+|++....|.....|...|++|+|+
T Consensus       342 -~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  342 -GSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             -ccCCcc-ccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence             000111 1112211111222   25679999999999966 48899999999999999999998888999999999999


Q ss_pred             C-CCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEE
Q 014302          287 P-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY  365 (427)
Q Consensus       287 p-dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vw  365 (427)
                      | |.+|+++| +-|+.+++|.+.+........             ...-|++++|+|||++.++   |+-+   |..++|
T Consensus       419 PvDDryFiSG-SLD~KvRiWsI~d~~Vv~W~D-------------l~~lITAvcy~PdGk~avI---Gt~~---G~C~fY  478 (712)
T KOG0283|consen  419 PVDDRYFISG-SLDGKVRLWSISDKKVVDWND-------------LRDLITAVCYSPDGKGAVI---GTFN---GYCRFY  478 (712)
T ss_pred             ccCCCcEeec-ccccceEEeecCcCeeEeehh-------------hhhhheeEEeccCCceEEE---EEec---cEEEEE
Confidence            9 66777765 555589999888863211111             1136899999999999988   6655   679999


Q ss_pred             EeccCceEEEeeeeeeeCCC-CCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          366 DARRTPLISLSLIGFIRGPG-DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       366 d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++...++..-.....-++.. ...+...++|.|....  -+.|..+|.+|.+|++
T Consensus       479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~--~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPD--EVLVTSNDSRIRIYDG  531 (712)
T ss_pred             EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCC--eEEEecCCCceEEEec
Confidence            99887765443332222221 1224667888886433  5888889999999997

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=7.8e-18  Score=143.45  Aligned_cols=234  Identities=15%  Similarity=0.229  Sum_probs=164.1

Q ss_pred             ceeeeEEcCCCCEEEEEeC--CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISG--STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|..+.|......+..++.  |.+||.-++...  +.+....+|...|.+|+.+|-++.+|.++.|++|++||+...+. 
T Consensus        58 G~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN--kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-  134 (311)
T KOG1446|consen   58 GVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN--KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-  134 (311)
T ss_pred             cccEEEEecCCceEEEccCCCCCceEEEEeecC--ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC-
Confidence            5677778655555555555  889999888777  67777889999999999999998888888999999999971110 


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                                              ..                          .+  +..+-...+|+|+|-.+|++....
T Consensus       135 ------------------------qg--------------------------~l--~~~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen  135 ------------------------QG--------------------------LL--NLSGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             ------------------------ce--------------------------EE--ecCCCcceeECCCCcEEEEecCCC
Confidence                                    00                          01  122334678999999999888777


Q ss_pred             cEEEEEcCCCCccccc------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--CCccccccccccccceeec
Q 014302          259 TFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLT  330 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  330 (427)
                      .|++||+|+....++.      ........+.|||||++++.++..+ .+++++..+..  .++..+....         
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~~lDAf~G~~~~tfs~~~~~~---------  232 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-FIYLLDAFDGTVKSTFSGYPNAG---------  232 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-cEEEEEccCCcEeeeEeeccCCC---------
Confidence            9999999987654332      4466788999999999999876555 77787777652  1222221110         


Q ss_pred             cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302          331 GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS  410 (427)
Q Consensus       331 ~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~  410 (427)
                        .---+.+|+||++++.+   +.+|   |+|.+|+++++..+..     .+++ ......|+.|.|.+     .+...+
T Consensus       233 --~~~~~a~ftPds~Fvl~---gs~d---g~i~vw~~~tg~~v~~-----~~~~-~~~~~~~~~fnP~~-----~mf~sa  293 (311)
T KOG1446|consen  233 --NLPLSATFTPDSKFVLS---GSDD---GTIHVWNLETGKKVAV-----LRGP-NGGPVSCVRFNPRY-----AMFVSA  293 (311)
T ss_pred             --CcceeEEECCCCcEEEE---ecCC---CcEEEEEcCCCcEeeE-----ecCC-CCCCccccccCCce-----eeeeec
Confidence              01246789999999988   6777   7799999999887633     2232 11124578888874     233445


Q ss_pred             CceEEEEe
Q 014302          411 SGFCCTYP  418 (427)
Q Consensus       411 ~g~i~~~~  418 (427)
                      +..+.+|-
T Consensus       294 ~s~l~fw~  301 (311)
T KOG1446|consen  294 SSNLVFWL  301 (311)
T ss_pred             CceEEEEe
Confidence            66666653

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.83  E-value=1.3e-19  Score=155.66  Aligned_cols=256  Identities=12%  Similarity=0.152  Sum_probs=153.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|+|+++.  ...+++|..|.+|+|||.+..  .......+|.+.|.|+.|...  -++..++|.+|++||++       
T Consensus       199 gVYClQYD--D~kiVSGlrDnTikiWD~n~~--~c~~~L~GHtGSVLCLqyd~r--viisGSSDsTvrvWDv~-------  265 (499)
T KOG0281|consen  199 GVYCLQYD--DEKIVSGLRDNTIKIWDKNSL--ECLKILTGHTGSVLCLQYDER--VIVSGSSDSTVRVWDVN-------  265 (499)
T ss_pred             ceEEEEec--chhhhcccccCceEEeccccH--HHHHhhhcCCCcEEeeeccce--EEEecCCCceEEEEecc-------
Confidence            45555543  344556666666666666555  444455566666666666544  45566666666666665       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC------------------cccCceEEeccCCeEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF------------------PGLGTPIRRGFGGLSIL  242 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~------------------l~~~~~~~~~~~~v~~~  242 (427)
                        ++                .++..+-+| -..|..+.|+..-..                  +....++.+|...|..+
T Consensus       266 --tg----------------e~l~tlihH-ceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV  326 (499)
T KOG0281|consen  266 --TG----------------EPLNTLIHH-CEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV  326 (499)
T ss_pred             --CC----------------chhhHHhhh-cceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence              22                223333332 333333333211000                  11112355678889888


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccccccc
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLL  319 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~  319 (427)
                      .|+  .+++++++.|.+|++|++.+.+..... +|...|.++.+.  |+++++|+++ .+|++|++.....  .++||..
T Consensus       327 dfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSD-ntIRlwdi~~G~cLRvLeGHEe  401 (499)
T KOG0281|consen  327 DFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD-NTIRLWDIECGACLRVLEGHEE  401 (499)
T ss_pred             ccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCC-ceEEEEeccccHHHHHHhchHH
Confidence            884  569999999999999999999985554 899888887764  7777766554 4899998887633  5566655


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE--eeeeeeeCCCCCCCceeEEecc
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL--SLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                                    -|.++.|+  .+.+++   |.-|   |+|+|||+..+.-..-  ...+..........+..++|.-
T Consensus       402 --------------LvRciRFd--~krIVS---GaYD---GkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~  459 (499)
T KOG0281|consen  402 --------------LVRCIRFD--NKRIVS---GAYD---GKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE  459 (499)
T ss_pred             --------------hhhheeec--Cceeee---cccc---ceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence                          56888885  567877   7777   8899999976432110  0011111111222344555542


Q ss_pred             CCCCCceeEEEeeCceEEEEecc
Q 014302          398 KFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       398 ~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                          - -+..+.-|..|.+|+|-
T Consensus       460 ----f-qIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  460 ----F-QIISSSHDDTILIWDFL  477 (499)
T ss_pred             ----e-EEEeccCCCeEEEEEcC
Confidence                1 24445568899999873

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.82  E-value=1.3e-19  Score=155.72  Aligned_cols=211  Identities=18%  Similarity=0.255  Sum_probs=150.8

Q ss_pred             CcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC
Q 014302          142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (427)
Q Consensus       142 ~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (427)
                      ..++|+|+.+.-+  .++....|++|+|||.+         ..                .+...+.+| .+.|.|+.|..
T Consensus       196 ~skgVYClQYDD~--kiVSGlrDnTikiWD~n---------~~----------------~c~~~L~GH-tGSVLCLqyd~  247 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE--KIVSGLRDNTIKIWDKN---------SL----------------ECLKILTGH-TGSVLCLQYDE  247 (499)
T ss_pred             cCCceEEEEecch--hhhcccccCceEEeccc---------cH----------------HHHHhhhcC-CCcEEeeeccc
Confidence            3568999999999  59999999999999988         33                345556677 66677776632


Q ss_pred             CCCCcccC--------------ce---EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc----cccCCCCe
Q 014302          222 DGRFPGLG--------------TP---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----WSSTSGFV  280 (427)
Q Consensus       222 dg~~l~~~--------------~~---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~v  280 (427)
                        +.+.+|              .+   +-.|...|..+.|+  +.++++++.|.++.+||+.+.....    +.+|...|
T Consensus       248 --rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV  323 (499)
T KOG0281|consen  248 --RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  323 (499)
T ss_pred             --eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence              232222              22   22377888888886  4589999999999999998876432    33999999


Q ss_pred             eEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcc
Q 014302          281 TGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY  358 (427)
Q Consensus       281 ~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~  358 (427)
                      ..+.|+  .+++++++ ++.+|+.|++...  ..++.+|..              .|.++.+  .|+++++   |+.|  
T Consensus       324 NvVdfd--~kyIVsAS-gDRTikvW~~st~efvRtl~gHkR--------------GIAClQY--r~rlvVS---GSSD--  379 (499)
T KOG0281|consen  324 NVVDFD--DKYIVSAS-GDRTIKVWSTSTCEFVRTLNGHKR--------------GIACLQY--RDRLVVS---GSSD--  379 (499)
T ss_pred             eeeccc--cceEEEec-CCceEEEEeccceeeehhhhcccc--------------cceehhc--cCeEEEe---cCCC--
Confidence            999997  46887765 4558888888775  224555554              5666554  5777766   8888  


Q ss_pred             eeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          359 KGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       359 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                       .+|++||+..+.++.     .++|..+-  .-|+-|..+     -+..|-=||+|.+|+|--
T Consensus       380 -ntIRlwdi~~G~cLR-----vLeGHEeL--vRciRFd~k-----rIVSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  380 -NTIRLWDIECGACLR-----VLEGHEEL--VRCIRFDNK-----RIVSGAYDGKIKVWDLQA  429 (499)
T ss_pred             -ceEEEEeccccHHHH-----HHhchHHh--hhheeecCc-----eeeeccccceEEEEeccc
Confidence             679999999998873     34454444  347777542     344555799999999753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=7.3e-19  Score=156.62  Aligned_cols=223  Identities=13%  Similarity=0.130  Sum_probs=164.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.+++-+|+|.+|+.|+..+.+++|.+.++  ........|-..|+++.|+-||..++.+|.|+.|.+|.+.       
T Consensus        83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG--~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~-------  153 (476)
T KOG0646|consen   83 PVHALASSNLGYFLLAGTISGNLYLWELSSG--ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT-------  153 (476)
T ss_pred             ceeeeecCCCceEEEeecccCcEEEEEeccc--cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE-------
Confidence            6999999999999999999999999999998  5666668899999999999999666666677999999986       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC--CCEEEEEecCC
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT--GDYFFAAKFDG  258 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~dg  258 (427)
                                          ..+.....+..               +.-..+..|.-+|+.+...+.  ..+|++++.|.
T Consensus       154 --------------------~lv~a~~~~~~---------------~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~  198 (476)
T KOG0646|consen  154 --------------------DLVSADNDHSV---------------KPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR  198 (476)
T ss_pred             --------------------eecccccCCCc---------------cceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence                                12221111100               001123446777888876654  46899999999


Q ss_pred             cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC---ccccccccccccceeec-cCC-
Q 014302          259 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS---LDAHLLPVDLPDIVSLT-GSQ-  333 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~-  333 (427)
                      ++++||+..+...........+.+++..|-++.+++|+ .+|.|++..+....+.   +.......+......+. +.+ 
T Consensus       199 t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt-~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~  277 (476)
T KOG0646|consen  199 TIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT-EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE  277 (476)
T ss_pred             eEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC-CcceEEeeehhcCCcccccccccccccccceeeeeccccCC
Confidence            99999999988766667788999999999888888765 4558888887764321   10011111222222232 333 


Q ss_pred             -ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE
Q 014302          334 -GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS  374 (427)
Q Consensus       334 -~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~  374 (427)
                       .|++++.+-||..|++   |+.|   |.|+|||+.+.+++.
T Consensus       278 ~~ITcLais~DgtlLlS---Gd~d---g~VcvWdi~S~Q~iR  313 (476)
T KOG0646|consen  278 SAITCLAISTDGTLLLS---GDED---GKVCVWDIYSKQCIR  313 (476)
T ss_pred             cceeEEEEecCccEEEe---eCCC---CCEEEEecchHHHHH
Confidence             8999999999999999   8888   779999998877653

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=1.8e-18  Score=161.38  Aligned_cols=171  Identities=12%  Similarity=0.159  Sum_probs=124.7

Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc-ccCCCCeeEEEECCC---CCEEEEEEcCCceeeeeeeCCC-
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPE---GRMILLAFAGSLTLGSIHFASK-  310 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spd---g~~l~~~~~~~~~i~~~~~~~~-  310 (427)
                      .-++.+++.||+|++||+|..-|.++|||+...+...+ ..|...|.++.||..   .+.|+++ +.+..|.++++... 
T Consensus       459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASa-srdRlIHV~Dv~rny  537 (1080)
T KOG1408|consen  459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASA-SRDRLIHVYDVKRNY  537 (1080)
T ss_pred             ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhc-cCCceEEEEeccccc
Confidence            35799999999999999999999999999988776444 499999999999863   3556655 55546666665442 


Q ss_pred             --CCCccccccccccc-----------------------------------cceeeccCCceeEEEECCCCCEEEEEEec
Q 014302          311 --PPSLDAHLLPVDLP-----------------------------------DIVSLTGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       311 --~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                        ..++++|...+..-                                   ..+....++.+.+|+..|+.+++++   +
T Consensus       538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t---~  614 (1080)
T KOG1408|consen  538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT---V  614 (1080)
T ss_pred             chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE---E
Confidence              33555553322100                                   0001112347899999999999988   7


Q ss_pred             CCCcceeEEEEEEeccCceEEEeeeeeeeC-CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          354 GDDIYKGLIAIYDARRTPLISLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      +.|++   |+||++++++...     .+.+ ..++...+.+...|.   |--|+..++|-.+.+|+|+-
T Consensus       615 cQDrn---irif~i~sgKq~k-----~FKgs~~~eG~lIKv~lDPS---giY~atScsdktl~~~Df~s  672 (1080)
T KOG1408|consen  615 CQDRN---IRIFDIESGKQVK-----SFKGSRDHEGDLIKVILDPS---GIYLATSCSDKTLCFVDFVS  672 (1080)
T ss_pred             ecccc---eEEEeccccceee-----eecccccCCCceEEEEECCC---ccEEEEeecCCceEEEEecc
Confidence            88855   9999999988762     2334 345567888888886   55699999999999999873

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.82  E-value=1.8e-19  Score=161.08  Aligned_cols=282  Identities=18%  Similarity=0.229  Sum_probs=190.7

Q ss_pred             cCcchhhhhhcccceeeeccCCCCCccccCCCCCchhhhhccccccccchhhhhhhhhccccccccCCCCCC--------
Q 014302           25 LSDDRAKDTYGKVLGMVFAPVPFQSDELASSSPDRQESEQRGREEGEGLFSTLHGIISHSIKPLLHPDHVHL--------   96 (427)
Q Consensus        25 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~--------   96 (427)
                      .+.-+.++.+ +.+|..+...|........         .+.+.-++.+..++.++.........||...++        
T Consensus       168 ~s~~h~k~~~-dyq~r~~l~~P~dv~vnlR---------~~rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~  237 (503)
T KOG0282|consen  168 SSTLHGKSLF-DYQGRSYLQKPKDVGVNLR---------EERCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDG  237 (503)
T ss_pred             cccccccchh-hccccccccCCcccCCccc---------cceeeccHhheeeccCCccccchhhhccceeeEEEecCCCc
Confidence            3333333333 5566666666655544433         112334555556666666655555556533322        


Q ss_pred             ----------------CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCce
Q 014302           97 ----------------LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRS  158 (427)
Q Consensus        97 ----------------l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~  158 (427)
                                      ..+|  .|.+++|+++|..+++++.|+.+++||.+++   .+.........++|+.|.|++.++
T Consensus       238 ~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG---~~~~~f~~~~~~~cvkf~pd~~n~  314 (503)
T KOG0282|consen  238 LVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG---QVLSRFHLDKVPTCVKFHPDNQNI  314 (503)
T ss_pred             eEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc---eEEEEEecCCCceeeecCCCCCcE
Confidence                            2233  8999999999999999999999999999998   444444556678999999999555


Q ss_pred             -EEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------
Q 014302          159 -LSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------  231 (427)
Q Consensus       159 -la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------  231 (427)
                       |+.+.++.|+.||+.         ++                ..++.+..| ...|..+.|-++|+...+...      
T Consensus       315 fl~G~sd~ki~~wDiR---------s~----------------kvvqeYd~h-Lg~i~~i~F~~~g~rFissSDdks~ri  368 (503)
T KOG0282|consen  315 FLVGGSDKKIRQWDIR---------SG----------------KVVQEYDRH-LGAILDITFVDEGRRFISSSDDKSVRI  368 (503)
T ss_pred             EEEecCCCcEEEEecc---------ch----------------HHHHHHHhh-hhheeeeEEccCCceEeeeccCccEEE
Confidence             455567999999998         22                456666666 889999999999887432211      


Q ss_pred             --------E----EeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc----cccccC--CCCeeEEEECCCCCEEE
Q 014302          232 --------I----RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSST--SGFVTGATWDPEGRMIL  293 (427)
Q Consensus       232 --------~----~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~--~~~v~~v~~spdg~~l~  293 (427)
                              +    ....-...++..+|++++++.-+.|+.|.++.+...-.    ..+.+|  .+.-..+.|||||++|+
T Consensus       369 We~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~  448 (503)
T KOG0282|consen  369 WENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC  448 (503)
T ss_pred             EEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence                    1    11223466888999999999999999999998654322    334444  45677899999999999


Q ss_pred             EEEcCCceeeeeeeCCCC--CCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEE
Q 014302          294 LAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       294 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd  366 (427)
                      +|.+++ .+++|+.....  ..+..|              .+.+..+.|+|... .+|+   ++.+   |.|++|+
T Consensus       449 SGdsdG-~v~~wdwkt~kl~~~lkah--------------~~~ci~v~wHP~e~Skvat---~~w~---G~Ikiwd  503 (503)
T KOG0282|consen  449 SGDSDG-KVNFWDWKTTKLVSKLKAH--------------DQPCIGVDWHPVEPSKVAT---CGWD---GLIKIWD  503 (503)
T ss_pred             eecCCc-cEEEeechhhhhhhccccC--------------CcceEEEEecCCCcceeEe---cccC---ceeEecC
Confidence            875554 66666555431  133333              24789999998765 4555   4566   7799996

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.82  E-value=2.5e-18  Score=151.86  Aligned_cols=220  Identities=20%  Similarity=0.222  Sum_probs=164.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|+.+.++|+...+++++.|..|+||.....  ........|..+|+.+..+|.|+++|++..+++..+.++.       
T Consensus       263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~--s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~-------  333 (506)
T KOG0289|consen  263 KITSVKFHKDLDTVITASADEIIRVWSVPLS--SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS-------  333 (506)
T ss_pred             EEEEEEeccchhheeecCCcceEEeeccccc--cCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc-------
Confidence            7999999999999999999999999987766  3555667899999999999999888888888998888887       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------EEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------IRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~~~~~~v~~~~  243 (427)
                        .+              ...... ........+++.+|+|||.++++|..                 +.+|.++|..++
T Consensus       334 --~g--------------~~lt~v-s~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~  396 (506)
T KOG0289|consen  334 --SG--------------SQLTVV-SDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAIS  396 (506)
T ss_pred             --CC--------------cEEEEE-eeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEE
Confidence              22              111111 11122456889999999999776643                 556899999999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeee----eCCCCCCcccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIH----FASKPPSLDAH  317 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~----~~~~~~~~~~~  317 (427)
                      |+-+|-||++++.|+.|++||+|..+..+..  .....+.+++|.+.|++|+.++ .+-.++...    -|.....+.  
T Consensus       397 FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g-~~l~Vy~~~k~~k~W~~~~~~~--  473 (506)
T KOG0289|consen  397 FSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG-SDLQVYICKKKTKSWTEIKELA--  473 (506)
T ss_pred             eccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec-ceeEEEEEecccccceeeehhh--
Confidence            9999999999999999999999988763333  4445799999999999999873 332444443    222211111  


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                                  .+.+..+.+.|....++|++   ++.|   ..++++.+
T Consensus       474 ------------~~sg~st~v~Fg~~aq~l~s---~smd---~~l~~~a~  505 (506)
T KOG0289|consen  474 ------------DHSGLSTGVRFGEHAQYLAS---TSMD---AILRLYAL  505 (506)
T ss_pred             ------------hcccccceeeecccceEEee---ccch---hheEEeec
Confidence                        12346688999999999998   5555   33666543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.82  E-value=5.4e-18  Score=159.15  Aligned_cols=257  Identities=19%  Similarity=0.242  Sum_probs=189.5

Q ss_pred             ceeeeEEcCCCC---EEEEEeCCCeEEEEEccCCCCc-------ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302          101 DLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSGKD-------ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (427)
Q Consensus       101 ~V~~l~~sp~g~---~lat~~~d~~v~vwd~~~~~~~-------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw  170 (427)
                      .+.+++|-|.+.   .|++ -.+.++.+|.++.....       ......+|+..|+++++|.+. .++++|..+.+++|
T Consensus       322 kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~Sga~~SikiW  399 (888)
T KOG0306|consen  322 KIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLASGAGESIKIW  399 (888)
T ss_pred             heeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCc-eeeeecCCCcEEEE
Confidence            788899988764   3333 56788988888763111       123445799999999999887 88999999999999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEE
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIR  233 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~  233 (427)
                      +.+                         ..++++.+.   ...+.+..|-|.++++..|.                 .++
T Consensus       400 n~~-------------------------t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~  451 (888)
T KOG0306|consen  400 NRD-------------------------TLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR  451 (888)
T ss_pred             Ecc-------------------------CcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh
Confidence            997                         224444444   44677888888777744332                 256


Q ss_pred             eccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-----c--------ccccCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          234 RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----E--------PWSSTSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       234 ~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~--------~~~~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                      .|.+.+++++.+||++.+++|+.|.+|++||......     .        ........|.++.+||||++|+++--+. 
T Consensus       452 AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn-  530 (888)
T KOG0306|consen  452 AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN-  530 (888)
T ss_pred             ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC-
Confidence            7999999999999999999999999999999642211     1        1225667899999999999999876555 


Q ss_pred             eeeeeeeCCC--CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeee
Q 014302          301 TLGSIHFASK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI  378 (427)
Q Consensus       301 ~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~  378 (427)
                      ++.++.+.+.  -.++-||..              +|.+|..|||++.+++   ++.|+   .|++|-+.-|.|...   
T Consensus       531 TVkVyflDtlKFflsLYGHkL--------------PV~smDIS~DSklivT---gSADK---nVKiWGLdFGDCHKS---  587 (888)
T KOG0306|consen  531 TVKVYFLDTLKFFLSLYGHKL--------------PVLSMDISPDSKLIVT---GSADK---NVKIWGLDFGDCHKS---  587 (888)
T ss_pred             eEEEEEecceeeeeeeccccc--------------ceeEEeccCCcCeEEe---ccCCC---ceEEeccccchhhhh---
Confidence            7777766664  234556666              7799999999999998   77774   499999998887522   


Q ss_pred             eeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          379 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       379 ~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                       + -+..+.  ..++.|.|.   ..+.-.|..||.|.-|+
T Consensus       588 -~-fAHdDS--vm~V~F~P~---~~~FFt~gKD~kvKqWD  620 (888)
T KOG0306|consen  588 -F-FAHDDS--VMSVQFLPK---THLFFTCGKDGKVKQWD  620 (888)
T ss_pred             -h-hcccCc--eeEEEEccc---ceeEEEecCcceEEeec
Confidence             1 122333  679999996   33555666899999885

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=2.8e-18  Score=152.00  Aligned_cols=243  Identities=15%  Similarity=0.203  Sum_probs=172.4

Q ss_pred             eeeEEcCC-------CCEEEEEeCCCeEEEEEccCCCCcc-------------------eeeccCCcCCeeEEEEccCCC
Q 014302          103 QGVSWHQH-------KHIVAFISGSTQVIVRDYEDSGKDA-------------------CILTSDSQRDVKVLEWRPNGG  156 (427)
Q Consensus       103 ~~l~~sp~-------g~~lat~~~d~~v~vwd~~~~~~~~-------------------~~~~~~~~~~v~~l~~sp~~~  156 (427)
                      .|++|.-.       |+++|.|+.|..|.|||++-.....                   .....+|...|.+++|+-.-.
T Consensus       177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~  256 (463)
T KOG0270|consen  177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR  256 (463)
T ss_pred             hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence            46666432       5699999999999999997531100                   111235888899999999888


Q ss_pred             ceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEec
Q 014302          157 RSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRG  235 (427)
Q Consensus       157 ~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~  235 (427)
                      .+||+|+. .+|++||++         ++                ++..                          .+..|
T Consensus       257 nVLaSgsaD~TV~lWD~~---------~g----------------~p~~--------------------------s~~~~  285 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVD---------TG----------------KPKS--------------------------SITHH  285 (463)
T ss_pred             eeEEecCCCceEEEEEcC---------CC----------------Ccce--------------------------ehhhc
Confidence            89999875 999999998         22                2222                          22335


Q ss_pred             cCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CC
Q 014302          236 FGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PP  312 (427)
Q Consensus       236 ~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~  312 (427)
                      .+.|.++.|+|... .|++|+.|++|.+.|.|..... ......+.|..++|.|.....++++.++|.++-+++.+. .+
T Consensus       286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~  365 (463)
T KOG0270|consen  286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP  365 (463)
T ss_pred             CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence            67788888887654 6779999999999999964442 222677899999999999888888888889998888875 22


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  392 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (427)
                      .            .....|.++|.++++++.-..+.++  ++.|   ++|++|++.....-......+.     -....|
T Consensus       366 v------------wt~~AHd~~ISgl~~n~~~p~~l~t--~s~d---~~Vklw~~~~~~~~~v~~~~~~-----~~rl~c  423 (463)
T KOG0270|consen  366 V------------WTLKAHDDEISGLSVNIQTPGLLST--ASTD---KVVKLWKFDVDSPKSVKEHSFK-----LGRLHC  423 (463)
T ss_pred             e------------eEEEeccCCcceEEecCCCCcceee--cccc---ceEEEEeecCCCCccccccccc-----ccceee
Confidence            1            1222345589999999887777765  7777   7899999865332111111111     111446


Q ss_pred             EEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          393 FSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       393 ~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      +++.|..  -.+|++|-..+.+.+|++.
T Consensus       424 ~~~~~~~--a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  424 FALDPDV--AFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             cccCCCc--ceEEEecCccceEEEeecc
Confidence            7777753  4589999999999999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=3.6e-18  Score=153.06  Aligned_cols=235  Identities=15%  Similarity=0.190  Sum_probs=172.7

Q ss_pred             ceeeeEEcCCCCE-EEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHI-VAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~-lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .|.+++|+|...+ +|+. ..-.+.||+....  ..........+.|+++.|..|| .+||+|.+ |.|+|+|+.     
T Consensus        28 ~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~--~~~k~~srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k-----   98 (487)
T KOG0310|consen   28 SVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTR--SVRKTFSRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMK-----   98 (487)
T ss_pred             cceeEecCCCCCCceEEe-cccEEEEEecchh--hhhhhHHhhccceeEEEeecCC-eEEEccCCcCcEEEeccc-----
Confidence            7999999998873 4444 3557889876665  4444455678899999999999 89998887 889999975     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFD  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d  257 (427)
                          ++                ..+.                          .+..|..++..+.|+|++..++ +|++|
T Consensus        99 ----~r----------------~iLR--------------------------~~~ah~apv~~~~f~~~d~t~l~s~sDd  132 (487)
T KOG0310|consen   99 ----SR----------------VILR--------------------------QLYAHQAPVHVTKFSPQDNTMLVSGSDD  132 (487)
T ss_pred             ----cH----------------HHHH--------------------------HHhhccCceeEEEecccCCeEEEecCCC
Confidence                10                0111                          2445677888999999777555 88999


Q ss_pred             CcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCcee
Q 014302          258 GTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE  336 (427)
Q Consensus       258 g~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  336 (427)
                      +.+++||+.+.... ...+|+..|.+.+|+|-..+++++++.|+.++.|+......            ....+.++.+|.
T Consensus       133 ~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~------------~v~elnhg~pVe  200 (487)
T KOG0310|consen  133 KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS------------RVVELNHGCPVE  200 (487)
T ss_pred             ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc------------eeEEecCCCcee
Confidence            99999999888753 33499999999999998888888888888888888876521            123445666999


Q ss_pred             EEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEE
Q 014302          337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT  416 (427)
Q Consensus       337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~  416 (427)
                      ++.+-|.|..+|++  |++.     |+|||+.++......   .   ........|+.+..+   +.-|-.|.-||++.+
T Consensus       201 ~vl~lpsgs~iasA--gGn~-----vkVWDl~~G~qll~~---~---~~H~KtVTcL~l~s~---~~rLlS~sLD~~VKV  264 (487)
T KOG0310|consen  201 SVLALPSGSLIASA--GGNS-----VKVWDLTTGGQLLTS---M---FNHNKTVTCLRLASD---STRLLSGSLDRHVKV  264 (487)
T ss_pred             eEEEcCCCCEEEEc--CCCe-----EEEEEecCCceehhh---h---hcccceEEEEEeecC---CceEeecccccceEE
Confidence            99999999999997  6654     999999855432111   0   112233668888764   344555559999999


Q ss_pred             Ee
Q 014302          417 YP  418 (427)
Q Consensus       417 ~~  418 (427)
                      |+
T Consensus       265 fd  266 (487)
T KOG0310|consen  265 FD  266 (487)
T ss_pred             EE
Confidence            98

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.81  E-value=8.2e-18  Score=141.71  Aligned_cols=217  Identities=13%  Similarity=0.153  Sum_probs=157.1

Q ss_pred             CCCCceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCC---------cce----eeccCCcCCeeEEEEccCCCceEEEe
Q 014302           97 LPEVDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK---------DAC----ILTSDSQRDVKVLEWRPNGGRSLSVG  162 (427)
Q Consensus        97 l~~~~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~---------~~~----~~~~~~~~~v~~l~~sp~~~~~la~g  162 (427)
                      ..+..|++++..+ .|+++++|+.||.|.|||++....         ...    .-..+|.-.|.++.|-|-..-++.++
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss  120 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS  120 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence            3445899999987 578999999999999999987521         011    11134778899999999665566555


Q ss_pred             -cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEE
Q 014302          163 -CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSI  241 (427)
Q Consensus       163 -~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~  241 (427)
                       .|.++++||.+                         ..+....++                           ..+.|++
T Consensus       121 SFDhtlKVWDtn-------------------------TlQ~a~~F~---------------------------me~~VYs  148 (397)
T KOG4283|consen  121 SFDHTLKVWDTN-------------------------TLQEAVDFK---------------------------MEGKVYS  148 (397)
T ss_pred             cccceEEEeecc-------------------------cceeeEEee---------------------------cCceeeh
Confidence             56999999997                         111111111                           2335566


Q ss_pred             EEEccCCC---EEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC---Cc
Q 014302          242 LKWSPTGD---YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP---SL  314 (427)
Q Consensus       242 ~~~sp~g~---~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~---~~  314 (427)
                      -+|||-..   ++|+|..|-.|++-|+.++.. ..+.+|...|.++.|+|...+++.+++.++.++.|++.....   .+
T Consensus       149 hamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~l  228 (397)
T KOG4283|consen  149 HAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVL  228 (397)
T ss_pred             hhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEe
Confidence            66666332   566899999999999999998 556699999999999999999998888999999999887533   22


Q ss_pred             cccccccccccc-eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          315 DAHLLPVDLPDI-VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       315 ~~~~~~~~~~~~-~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      +.|.. ...+.. ....+.+.|+.++|+.||.+|+++  +.+    ..+++|+...+.-
T Consensus       229 D~hn~-k~~p~~~~n~ah~gkvngla~tSd~~~l~~~--gtd----~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  229 DQHNT-KRPPILKTNTAHYGKVNGLAWTSDARYLASC--GTD----DRIRVWNMESGRN  280 (397)
T ss_pred             ecccC-ccCccccccccccceeeeeeecccchhhhhc--cCc----cceEEeecccCcc
Confidence            33321 111112 245577799999999999999996  444    3499999987653

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=3.3e-17  Score=133.06  Aligned_cols=244  Identities=16%  Similarity=0.168  Sum_probs=161.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc---ceeeccCCcCCeeEEEEccC---CCceEEEecCCeEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~v~~l~~sp~---~~~~la~g~~~~i~iw~~~~  174 (427)
                      .|.|.+|+|+|++||+|+.|.+|++.-++.....   .-....-|.+.|..++|-.+   +..+|++++.+..+||-.+ 
T Consensus        91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~td-  169 (350)
T KOG0641|consen   91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITD-  169 (350)
T ss_pred             cEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEee-
Confidence            8999999999999999999999999777654111   12233458999999999743   4468998888777777655 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                            +..|                ....                          .+.+|.+.|.++ ++=+|-.+++|
T Consensus       170 ------c~~g----------------~~~~--------------------------a~sghtghilal-yswn~~m~~sg  200 (350)
T KOG0641|consen  170 ------CGRG----------------QGFH--------------------------ALSGHTGHILAL-YSWNGAMFASG  200 (350)
T ss_pred             ------cCCC----------------Ccce--------------------------eecCCcccEEEE-EEecCcEEEcc
Confidence                  0011                1111                          234456666554 33367889999


Q ss_pred             ecCCcEEEEEcCCCCccccc--------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc
Q 014302          255 KFDGTFYLWETNTWTSEPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI  326 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      +.|.+|+.||++-..+....        -....|.+++..|.|+.|+++-.+. ....+++......            .
T Consensus       201 sqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds-sc~lydirg~r~i------------q  267 (350)
T KOG0641|consen  201 SQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS-SCMLYDIRGGRMI------------Q  267 (350)
T ss_pred             CCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC-ceEEEEeeCCcee------------e
Confidence            99999999999988775433        1236789999999999999765444 5555666554211            1


Q ss_pred             eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302          327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS  406 (427)
Q Consensus       327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~  406 (427)
                      ....+...|.++.|||...||.++   +-|   -.|++-|++.....++. .-.+ +. ...+++.+.|||..  -. ..
T Consensus       268 ~f~phsadir~vrfsp~a~yllt~---syd---~~ikltdlqgdla~el~-~~vv-~e-hkdk~i~~rwh~~d--~s-fi  335 (350)
T KOG0641|consen  268 RFHPHSADIRCVRFSPGAHYLLTC---SYD---MKIKLTDLQGDLAHELP-IMVV-AE-HKDKAIQCRWHPQD--FS-FI  335 (350)
T ss_pred             eeCCCccceeEEEeCCCceEEEEe---ccc---ceEEEeecccchhhcCc-eEEE-Ee-ccCceEEEEecCcc--ce-ee
Confidence            122345589999999999999885   444   45999999753322221 1122 21 22346778899862  12 23


Q ss_pred             EEeeCceEEEEec
Q 014302          407 VCWSSGFCCTYPL  419 (427)
Q Consensus       407 v~~~~g~i~~~~~  419 (427)
                      ....|-...+|.+
T Consensus       336 sssadkt~tlwa~  348 (350)
T KOG0641|consen  336 SSSADKTATLWAL  348 (350)
T ss_pred             eccCcceEEEecc
Confidence            3336777777754

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.81  E-value=3.9e-18  Score=148.30  Aligned_cols=247  Identities=15%  Similarity=0.235  Sum_probs=170.5

Q ss_pred             ceeeeEEcCCCC---EEEEEeCCCeEEEEEccCCCCcc--eeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC
Q 014302          101 DLQGVSWHQHKH---IVAFISGSTQVIVRDYEDSGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~---~lat~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~  175 (427)
                      .|.+++|.-..+   .+++++.|.++++|.++.+....  .....+|...|-+++..++|.+++..+.|..+.||+...+
T Consensus       146 ~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~  225 (423)
T KOG0313|consen  146 PIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETD  225 (423)
T ss_pred             ceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCC
Confidence            778788754333   69999999999999998873322  2233489999999999999955555556799999994321


Q ss_pred             CC-ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-------------cccCceEE--eccCCe
Q 014302          176 GN-AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-------------PGLGTPIR--RGFGGL  239 (427)
Q Consensus       176 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-------------l~~~~~~~--~~~~~v  239 (427)
                      .. ....... ..............-.++..+.+| ..+|.++.|++.+..             +.++....  ......
T Consensus       226 ~~~~~E~~s~-~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl  303 (423)
T KOG0313|consen  226 EEDELESSSN-RRRKKQKREKEGGTRTPLVTLEGH-TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSL  303 (423)
T ss_pred             ccccccccch-hhhhhhhhhhcccccCceEEeccc-ccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcce
Confidence            11 0000000 000011111122233455667777 999999999985433             11222221  234678


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEEcCCCCc----cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      .++..+|..++|++|+.|..+++||.+++..    ..+.+|++.|.++.|+|...++++.++.++++++|++......+ 
T Consensus       304 ~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl-  382 (423)
T KOG0313|consen  304 NCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL-  382 (423)
T ss_pred             eEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc-
Confidence            8999999999999999999999999998764    34559999999999999999988888999899999998864211 


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                                .....+...|.++.|+. +.++++   |+.|   .+|+|+.-
T Consensus       383 ----------ydI~~h~DKvl~vdW~~-~~~IvS---GGaD---~~l~i~~~  417 (423)
T KOG0313|consen  383 ----------YDIAGHNDKVLSVDWNE-GGLIVS---GGAD---NKLRIFKG  417 (423)
T ss_pred             ----------eeeccCCceEEEEeccC-CceEEe---ccCc---ceEEEecc
Confidence                      00111234789999985 567777   8888   56998864

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=1.5e-18  Score=161.96  Aligned_cols=221  Identities=14%  Similarity=0.180  Sum_probs=176.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc--CCCceEEEecC-CeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCK-GGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~~la~g~~-~~i~iw~~~~~~~  177 (427)
                      .|++++.||+|++||+|..-|+++||++...  ........|...|.|+.||-  -+.++||++++ .-|+|+|+.    
T Consensus       461 G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l--~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~----  534 (1080)
T KOG1408|consen  461 GFRALAVSPDGQHLASGDRGGNLRVYDLQEL--EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK----  534 (1080)
T ss_pred             ceEEEEECCCcceecccCccCceEEEEehhh--hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc----
Confidence            7999999999999999999999999999877  45556678999999999983  24468998877 678899996    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC---ccc----------------CceEEec---
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF---PGL----------------GTPIRRG---  235 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~---l~~----------------~~~~~~~---  235 (427)
                                          .++.+++.+.+| ...|+++.|-..|-.   +.+                +..+..|   
T Consensus       535 --------------------rny~l~qtld~H-SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t  593 (1080)
T KOG1408|consen  535 --------------------RNYDLVQTLDGH-SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQT  593 (1080)
T ss_pred             --------------------cccchhhhhccc-ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccc
Confidence                                245677788888 899999999876621   211                2222222   


Q ss_pred             --cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc-c---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          236 --FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-S---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       236 --~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                        ...++.|+..|..+++++++.|+.|+|||+.+++..+. .   .|.+....+...|.|.||++.+++. ++..+++..
T Consensus       594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk-tl~~~Df~s  672 (1080)
T KOG1408|consen  594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK-TLCFVDFVS  672 (1080)
T ss_pred             cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC-ceEEEEecc
Confidence              24688999999999999999999999999999987443 3   6778899999999999999887666 888888887


Q ss_pred             CCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          310 KPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       310 ~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ...  ...||..              .|+.|.|.+|-+.|++   .+.|   |.|.||.+..
T Consensus       673 gEcvA~m~GHsE--------------~VTG~kF~nDCkHlIS---vsgD---gCIFvW~lp~  714 (1080)
T KOG1408|consen  673 GECVAQMTGHSE--------------AVTGVKFLNDCKHLIS---VSGD---GCIFVWKLPL  714 (1080)
T ss_pred             chhhhhhcCcch--------------heeeeeecccchhhee---ecCC---ceEEEEECch
Confidence            532  3334433              7899999999999998   4555   8899999864

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=3.8e-18  Score=151.69  Aligned_cols=272  Identities=18%  Similarity=0.221  Sum_probs=176.3

Q ss_pred             ceeeeEEcCCCC--EEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCC-ceEEEecCCeEEEEeccCC
Q 014302          101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~--~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~-~~la~g~~~~i~iw~~~~~  175 (427)
                      .|++++|||..+  .+|+|..-|+|-+||+...  ..........|..+|.++.|+|... ++++++.||+|++-|++..
T Consensus       188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~  267 (498)
T KOG4328|consen  188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN  267 (498)
T ss_pred             ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence            899999999875  8889989999999999632  3345566678999999999999754 5677778899999998711


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc------------------cCceEEeccC
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG------------------LGTPIRRGFG  237 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~------------------~~~~~~~~~~  237 (427)
                      -...                       +-.++.. ...+..+.|+.+...+.                  ....++.|..
T Consensus       268 i~e~-----------------------v~s~~~d-~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k  323 (498)
T KOG4328|consen  268 ISEE-----------------------VLSLDTD-NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK  323 (498)
T ss_pred             hhHH-----------------------HhhcCcc-ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc
Confidence            0000                       0000000 11112222222211100                  1123556788


Q ss_pred             CeEEEEEccCCCE-EEEEecCCcEEEEEcCCCCccc--c---ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC---
Q 014302          238 GLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEP--W---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA---  308 (427)
Q Consensus       238 ~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~~~--~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~---  308 (427)
                      .|.+++++|...+ |++++.|++.+|||++......  +   ..|...|.++.|||.|-.|++++.++ .|++|+..   
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~-~IRv~dss~~s  402 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN-EIRVFDSSCIS  402 (498)
T ss_pred             ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC-ceEEeeccccc
Confidence            9999999998875 5599999999999999866533  2   28999999999999888888765555 78777763   


Q ss_pred             CC--CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCC
Q 014302          309 SK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD  386 (427)
Q Consensus       309 ~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~  386 (427)
                      .+  ....-.|.        ......-......|.|+..++++   |.--   ..|-|+|-+.++.+.-     +..+..
T Consensus       403 a~~~p~~~I~Hn--------~~t~RwlT~fKA~W~P~~~li~v---g~~~---r~IDv~~~~~~q~v~e-----l~~P~~  463 (498)
T KOG4328|consen  403 AKDEPLGTIPHN--------NRTGRWLTPFKAAWDPDYNLIVV---GRYP---RPIDVFDGNGGQMVCE-----LHDPES  463 (498)
T ss_pred             ccCCccceeecc--------CcccccccchhheeCCCccEEEE---eccC---cceeEEcCCCCEEeee-----ccCccc
Confidence            11  10000000        00000013456689999999988   4433   4499999988875411     112322


Q ss_pred             CCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          387 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       387 ~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      ..-+.-..|||.  ...++|-+.+.|.|++|.
T Consensus       464 ~tI~~vn~~HP~--~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  464 STIPSVNEFHPM--RDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             cccccceeeccc--ccceeccCCccceEEEEe
Confidence            222335679996  233788888899999875

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.80  E-value=4.9e-17  Score=154.47  Aligned_cols=296  Identities=18%  Similarity=0.217  Sum_probs=193.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCC-cCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCC-
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN-  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~-  177 (427)
                      .|+++.=+|-=..+|.|..+|+|.|+++..+  +. .....| .+.|++++|.-||..++|+|+. |.+.+||++...- 
T Consensus       204 ~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--ki-l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~  280 (910)
T KOG1539|consen  204 RITAIEQSPALDVVAIGLENGTVIIFNLKFD--KI-LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI  280 (910)
T ss_pred             ceeEeccCCcceEEEEeccCceEEEEEcccC--cE-EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee
Confidence            7899998998899999999999999999877  33 334455 4899999999999999999988 7799999973211 


Q ss_pred             --ccccc------------------cCcccccccccCC-CCcceeEeehhcccCCCceeeeEeC-CCCCCcc--------
Q 014302          178 --AASVR------------------SGAASFLGALSRG-PGTRWTLVDFLRSQNGEQITALSWG-PDGRFPG--------  227 (427)
Q Consensus       178 --~~~~~------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~--------  227 (427)
                        ..+..                  .++-++.....-+ +.+....++ .+.++..+..++.|. ..|..+.        
T Consensus       281 ~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR-~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~  359 (910)
T KOG1539|consen  281 NVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR-SRGGHSAPPSCIRFYGSQGHFILSAKQDRTL  359 (910)
T ss_pred             eeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee-eccCCCCCchheeeeccCcEEEEecccCcch
Confidence              11111                  1111111111011 111112222 222335666666654 2222200        


Q ss_pred             --------------------------------------------------------------------------cCc---
Q 014302          228 --------------------------------------------------------------------------LGT---  230 (427)
Q Consensus       228 --------------------------------------------------------------------------~~~---  230 (427)
                                                                                                .|.   
T Consensus       360 r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L  439 (910)
T KOG1539|consen  360 RSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL  439 (910)
T ss_pred             hhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe
Confidence                                                                                      000   


Q ss_pred             ---eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-cc---ccCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302          231 ---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PW---SSTSGFVTGATWDPEGRMILLAFAGSLTLG  303 (427)
Q Consensus       231 ---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~  303 (427)
                         .++.....+++++.+++|++.+.|...|.|.+|+++++-.. .+   ..|+..|++++...-++.+++++.++ .+.
T Consensus       440 ~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G-ilk  518 (910)
T KOG1539|consen  440 DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG-ILK  518 (910)
T ss_pred             cCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc-eEE
Confidence               01112256889999999999999999999999999998763 33   38999999999988888888765544 777


Q ss_pred             eeeeCCCCC--Cc--c-------ccc----ccc----------cccc---ceee-ccCCceeEEEECCCCCEEEEEEecC
Q 014302          304 SIHFASKPP--SL--D-------AHL----LPV----------DLPD---IVSL-TGSQGIEKIAWDASGERLAVSYKGG  354 (427)
Q Consensus       304 ~~~~~~~~~--~~--~-------~~~----~~~----------~~~~---~~~~-~~~~~i~~v~~sp~g~~La~~~~~~  354 (427)
                      .|++..+..  .+  .       -|.    ..+          +...   ...+ .+++.|++++|||||+||++   ++
T Consensus       519 fw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlis---as  595 (910)
T KOG1539|consen  519 FWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLIS---AS  595 (910)
T ss_pred             EEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEE---ee
Confidence            777776421  00  0       000    000          0000   0111 36679999999999999999   45


Q ss_pred             CCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeC-ceEEEEe
Q 014302          355 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS-GFCCTYP  418 (427)
Q Consensus       355 ~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~-g~i~~~~  418 (427)
                      .|   ++|++||+.++.++...        ..+..+..++|.|+   |..||+.-.+ --|++|.
T Consensus       596 mD---~tIr~wDlpt~~lID~~--------~vd~~~~sls~SPn---gD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  596 MD---STIRTWDLPTGTLIDGL--------LVDSPCTSLSFSPN---GDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             cC---CcEEEEeccCcceeeeE--------ecCCcceeeEECCC---CCEEEEEEecCceEEEEE
Confidence            55   66999999998876332        12222567889997   8888888777 4677775

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.6e-18  Score=163.16  Aligned_cols=203  Identities=17%  Similarity=0.274  Sum_probs=150.9

Q ss_pred             ceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCC-cceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCC
Q 014302          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~  177 (427)
                      ....+.|+. +.++|||++.+|.|.+||+..... +....+..|...|.++.|++...++|.+|+. +.|++||+.... 
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-  167 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-  167 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-
Confidence            566788874 456999999999999999988522 3445667799999999999998899888876 999999997110 


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC-CCEEEEEec
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT-GDYFFAAKF  256 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~  256 (427)
                                              ...                          .++.....|+.++|+|. +..++++.+
T Consensus       168 ------------------------S~~--------------------------t~~~nSESiRDV~fsp~~~~~F~s~~d  197 (839)
T KOG0269|consen  168 ------------------------SKS--------------------------TFRSNSESIRDVKFSPGYGNKFASIHD  197 (839)
T ss_pred             ------------------------ccc--------------------------cccccchhhhceeeccCCCceEEEecC
Confidence                                    011                          12223446777888874 557779999


Q ss_pred             CCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          257 DGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       257 dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      .|.+++||+|....  .++..|.++|.++.|+|++.+||+|+ .|+++++|++.+.....           ...+....+
T Consensus       198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~vkiWd~t~~~~~~-----------~~tInTiap  265 (839)
T KOG0269|consen  198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG-RDKMVKIWDMTDSRAKP-----------KHTINTIAP  265 (839)
T ss_pred             CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC-CCccEEEEeccCCCccc-----------eeEEeecce
Confidence            99999999998775  45669999999999999999999876 66688888887642211           111122348


Q ss_pred             eeEEEECCCCCE-EEEEEecCCCcceeEEEEEEeccC
Q 014302          335 IEKIAWDASGER-LAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       335 i~~v~~sp~g~~-La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      |..|.|-|..++ ||+|+...+    ..|+|||++..
T Consensus       266 v~rVkWRP~~~~hLAtcsmv~d----tsV~VWDvrRP  298 (839)
T KOG0269|consen  266 VGRVKWRPARSYHLATCSMVVD----TSVHVWDVRRP  298 (839)
T ss_pred             eeeeeeccCccchhhhhhcccc----ceEEEEeeccc
Confidence            899999998765 666655544    56999999763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.80  E-value=5.8e-17  Score=148.41  Aligned_cols=227  Identities=12%  Similarity=0.145  Sum_probs=148.0

Q ss_pred             ceeeeEEcCCCCEE-EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~l-at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      .+.+++|+|+|+.+ ++++.++.|++||....  ........+ ..+..++|+|+++.+++++. ++.+.+||+..    
T Consensus        32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~----  104 (300)
T TIGR03866        32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATG--EVIGTLPSG-PDPELFALHPNGKILYIANEDDNLVTVIDIET----  104 (300)
T ss_pred             CCCceEECCCCCEEEEEECCCCeEEEEECCCC--cEEEeccCC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCC----
Confidence            46789999999976 56678899999998876  222222223 33577899999965555554 58899999971    


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce---------------EE--eccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP---------------IR--RGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~---------------~~--~~~~~v~~  241 (427)
                           .                ..+..+..  ...+..++|+|+|+++..+..               ..  ........
T Consensus       105 -----~----------------~~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (300)
T TIGR03866       105 -----R----------------KVLAEIPV--GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRF  161 (300)
T ss_pred             -----C----------------eEEeEeeC--CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccE
Confidence                 1                12222221  223567888888877442210               00  01234567


Q ss_pred             EEEccCCCEEE-EEecCCcEEEEEcCCCCccccc-c-------CCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302          242 LKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS-S-------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  312 (427)
Q Consensus       242 ~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~-~-------~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~  312 (427)
                      ++|+|+|++|+ ++..++.|++||+++++..... .       .......++|+|+|++++++...+..+.+|++.+...
T Consensus       162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~  241 (300)
T TIGR03866       162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV  241 (300)
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            88999999887 4456899999999987653221 1       1112356889999998776655555677776644311


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                                   ......+..+.+++|+|+|++|+++  ...+   +.|.+||+++++++..
T Consensus       242 -------------~~~~~~~~~~~~~~~~~~g~~l~~~--~~~~---~~i~v~d~~~~~~~~~  286 (300)
T TIGR03866       242 -------------LDYLLVGQRVWQLAFTPDEKYLLTT--NGVS---NDVSVIDVAALKVIKS  286 (300)
T ss_pred             -------------EEEEEeCCCcceEEECCCCCEEEEE--cCCC---CeEEEEECCCCcEEEE
Confidence                         0111223468899999999999874  2333   6699999999887643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.80  E-value=9.4e-19  Score=149.13  Aligned_cols=211  Identities=17%  Similarity=0.237  Sum_probs=146.2

Q ss_pred             eeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCcee
Q 014302          137 ILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT  215 (427)
Q Consensus       137 ~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  215 (427)
                      .++++....+.|..||||| ++|++|+ ||-|.+|+..         +|                +...-++..      
T Consensus       207 ~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~---------~G----------------KlrKDLkYQ------  254 (508)
T KOG0275|consen  207 SIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYT---------TG----------------KLRKDLKYQ------  254 (508)
T ss_pred             heecccccchhheeeCCCC-ceEeeccccceeeeehhc---------cc----------------hhhhhhhhh------
Confidence            3455666778999999999 6666665 5889999986         22                111111111      


Q ss_pred             eeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccc-cCCCCeeEEEECCCCCEEE
Q 014302          216 ALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS-STSGFVTGATWDPEGRMIL  293 (427)
Q Consensus       216 ~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~v~~spdg~~l~  293 (427)
                           .       ...+--+..+|.|+.||.|...||+|+.||.|++|.++++.|. .+. .|...|+++.||.|++.++
T Consensus       255 -----A-------qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL  322 (508)
T KOG0275|consen  255 -----A-------QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL  322 (508)
T ss_pred             -----h-------hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhh
Confidence                 0       1123336788999999999999999999999999999999994 444 8999999999999999999


Q ss_pred             EEEcCCceeeeeeeCCCC--CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          294 LAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       294 ~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      +++.+. ++++--+.+.+  ..+.||..              -|+...|++||.++++   ++.|   |+|+||+.++.+
T Consensus       323 S~sfD~-tvRiHGlKSGK~LKEfrGHsS--------------yvn~a~ft~dG~~iis---aSsD---gtvkvW~~Ktte  381 (508)
T KOG0275|consen  323 SASFDQ-TVRIHGLKSGKCLKEFRGHSS--------------YVNEATFTDDGHHIIS---ASSD---GTVKVWHGKTTE  381 (508)
T ss_pred             cccccc-eEEEeccccchhHHHhcCccc--------------cccceEEcCCCCeEEE---ecCC---ccEEEecCcchh
Confidence            876444 33333333321  14445544              6799999999999999   4555   779999999988


Q ss_pred             eEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          372 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++.     .+...+.+.....+-..|+.  ..-+.||.-+..+.+..+
T Consensus       382 C~~-----Tfk~~~~d~~vnsv~~~PKn--peh~iVCNrsntv~imn~  422 (508)
T KOG0275|consen  382 CLS-----TFKPLGTDYPVNSVILLPKN--PEHFIVCNRSNTVYIMNM  422 (508)
T ss_pred             hhh-----hccCCCCcccceeEEEcCCC--CceEEEEcCCCeEEEEec
Confidence            863     22222233334455556652  445667766666665543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=8.1e-18  Score=138.93  Aligned_cols=245  Identities=16%  Similarity=0.243  Sum_probs=167.3

Q ss_pred             eeeeEEcCCC-CEEEEE-------eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCce-EEEecCCeEEEEec
Q 014302          102 LQGVSWHQHK-HIVAFI-------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAP  172 (427)
Q Consensus       102 V~~l~~sp~g-~~lat~-------~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~-la~g~~~~i~iw~~  172 (427)
                      =.++.|||-- ++||++       ..+|++.|-++.............-.+.+.+++|++....+ +++.+||+++|||+
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            3678899954 355554       34688888877644222223333456789999999976555 55557899999997


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EE
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YF  251 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l  251 (427)
                      ..+.                        .++..                          ++.|...|.++.|++..+ .+
T Consensus        91 ~~~s------------------------~Pi~~--------------------------~kEH~~EV~Svdwn~~~r~~~  120 (311)
T KOG0277|consen   91 TMPS------------------------KPIHK--------------------------FKEHKREVYSVDWNTVRRRIF  120 (311)
T ss_pred             CCCC------------------------cchhH--------------------------HHhhhhheEEeccccccceeE
Confidence            6211                        12332                          334567788888887555 45


Q ss_pred             EEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CCCcccccccccccccee
Q 014302          252 FAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PPSLDAHLLPVDLPDIVS  328 (427)
Q Consensus       252 ~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~  328 (427)
                      ++++.|++|++|+....+. .++.+|...|...+|+|.-..++...+.++.+++|++...  ...+..            
T Consensus       121 ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a------------  188 (311)
T KOG0277|consen  121 LTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA------------  188 (311)
T ss_pred             EeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe------------
Confidence            5889999999999876665 5667999999999999976655555677778888887653  111222            


Q ss_pred             eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEE
Q 014302          329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC  408 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~  408 (427)
                        +...|.++.|+.-...++++  ++.|   +.|++||++....    |...+.+.+-.  .-.+.|.|.  .-.+||.+
T Consensus       189 --h~~Eil~cdw~ky~~~vl~T--g~vd---~~vr~wDir~~r~----pl~eL~gh~~A--VRkvk~Sph--~~~lLaSa  253 (311)
T KOG0277|consen  189 --HNSEILCCDWSKYNHNVLAT--GGVD---NLVRGWDIRNLRT----PLFELNGHGLA--VRKVKFSPH--HASLLASA  253 (311)
T ss_pred             --ccceeEeecccccCCcEEEe--cCCC---ceEEEEehhhccc----cceeecCCceE--EEEEecCcc--hhhHhhhc
Confidence              22388999999655554444  7777   6799999987552    23344444444  336778775  35689988


Q ss_pred             eeCceEEEEeccccC
Q 014302          409 WSSGFCCTYPLIFRS  423 (427)
Q Consensus       409 ~~~g~i~~~~~~~~~  423 (427)
                      .=|=++.+|++.-.+
T Consensus       254 sYDmT~riw~~~~~d  268 (311)
T KOG0277|consen  254 SYDMTVRIWDPERQD  268 (311)
T ss_pred             cccceEEecccccch
Confidence            888889999876443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.2e-17  Score=155.07  Aligned_cols=239  Identities=17%  Similarity=0.260  Sum_probs=171.4

Q ss_pred             CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCC
Q 014302           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN  177 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~  177 (427)
                      +...+-++|+ ..+.||+|. ...|.+|+-..+  ....+...+...|+++.|+++| .+||+|.. +.|.|||..    
T Consensus       177 DfY~nlldWs-s~n~laVal-g~~vylW~~~s~--~v~~l~~~~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~----  247 (484)
T KOG0305|consen  177 DFYLNLLDWS-SANVLAVAL-GQSVYLWSASSG--SVTELCSFGEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVK----  247 (484)
T ss_pred             cHhhhHhhcc-cCCeEEEEe-cceEEEEecCCC--ceEEeEecCCCceEEEEECCCC-CEEEEeecCCeEEEEehh----
Confidence            3356678899 556777774 558899998877  3344444447899999999999 78888865 999999987    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                                           +.+.+..+..+                         |...|.+++|.  +..+.+|+.+
T Consensus       248 ---------------------~~k~~~~~~~~-------------------------h~~rvg~laW~--~~~lssGsr~  279 (484)
T KOG0305|consen  248 ---------------------EQKKTRTLRGS-------------------------HASRVGSLAWN--SSVLSSGSRD  279 (484)
T ss_pred             ---------------------hccccccccCC-------------------------cCceeEEEecc--CceEEEecCC
Confidence                                 11222222221                         56678888887  5677799999


Q ss_pred             CcEEEEEcCCCCcc-c-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302          258 GTFYLWETNTWTSE-P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       258 g~v~iwd~~~~~~~-~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                      +.|..+|++..+.. . ...|...|..+.|++|++++|+++.+. .+.+|+.....+            ......|.+.|
T Consensus       280 ~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN-~~~Iwd~~~~~p------------~~~~~~H~aAV  346 (484)
T KOG0305|consen  280 GKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN-VVFIWDGLSPEP------------KFTFTEHTAAV  346 (484)
T ss_pred             CcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc-ceEeccCCCccc------------cEEEeccceee
Confidence            99999999988762 3 458999999999999999999875554 666666633221            12334455689


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEE
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  415 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~  415 (427)
                      .+++|+|--.-|+++..|+.|   ++|++||..++..+.....        ......+.|.+.+. .-+.+.|+++..|.
T Consensus       347 KA~awcP~q~~lLAsGGGs~D---~~i~fwn~~~g~~i~~vdt--------gsQVcsL~Wsk~~k-Ei~sthG~s~n~i~  414 (484)
T KOG0305|consen  347 KALAWCPWQSGLLATGGGSAD---RCIKFWNTNTGARIDSVDT--------GSQVCSLIWSKKYK-ELLSTHGYSENQIT  414 (484)
T ss_pred             eEeeeCCCccCceEEcCCCcc---cEEEEEEcCCCcEeccccc--------CCceeeEEEcCCCC-EEEEecCCCCCcEE
Confidence            999999865544444556667   7899999998887633211        11244678888742 45788999999999


Q ss_pred             EEec
Q 014302          416 TYPL  419 (427)
Q Consensus       416 ~~~~  419 (427)
                      +|..
T Consensus       415 lw~~  418 (484)
T KOG0305|consen  415 LWKY  418 (484)
T ss_pred             EEec
Confidence            9975

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.79  E-value=4.6e-18  Score=152.77  Aligned_cols=241  Identities=13%  Similarity=0.200  Sum_probs=175.8

Q ss_pred             CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      +.-|+++.++|||+.|++|+.-.++.|||+.............-.-.+.+++.|||.+-.+++..+|.|.|||+.     
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh-----  539 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-----  539 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-----
Confidence            337899999999999999999999999999887322222222223457899999999667777788999999998     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                                          ....++.                          +.+|..++.|+.+++||..|-+|+-|.
T Consensus       540 --------------------nq~~Vrq--------------------------fqGhtDGascIdis~dGtklWTGGlDn  573 (705)
T KOG0639|consen  540 --------------------NQTLVRQ--------------------------FQGHTDGASCIDISKDGTKLWTGGLDN  573 (705)
T ss_pred             --------------------cceeeec--------------------------ccCCCCCceeEEecCCCceeecCCCcc
Confidence                                2233333                          445678899999999999999999999


Q ss_pred             cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          259 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      +||-||++.+...........|.++-.+|++.+|+++-.+. .+.+.+.... ..+.-|            .+..-|.++
T Consensus       574 tvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens-~vevlh~skp-~kyqlh------------lheScVLSl  639 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENS-NVEVLHTSKP-EKYQLH------------LHESCVLSL  639 (705)
T ss_pred             ceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccC-cEEEEecCCc-cceeec------------ccccEEEEE
Confidence            99999999988766667788999999999999999876555 5555544442 111111            122368999


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .|.+.|+|++++   +-|   ..+..|.+.-+..+       ++.. +...++++...-+   ..++..|..+-+..+|.
T Consensus       640 KFa~cGkwfvSt---GkD---nlLnawrtPyGasi-------Fqsk-E~SsVlsCDIS~d---dkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  640 KFAYCGKWFVST---GKD---NLLNAWRTPYGASI-------FQSK-ESSSVLSCDISFD---DKYIVTGSGDKKATVYE  702 (705)
T ss_pred             EecccCceeeec---Cch---hhhhhccCccccce-------eecc-ccCcceeeeeccC---ceEEEecCCCcceEEEE
Confidence            999999999995   344   34889998776643       2222 2222445544332   45677787787899998


Q ss_pred             ccc
Q 014302          419 LIF  421 (427)
Q Consensus       419 ~~~  421 (427)
                      +.|
T Consensus       703 V~Y  705 (705)
T KOG0639|consen  703 VIY  705 (705)
T ss_pred             EeC
Confidence            876

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.78  E-value=6e-16  Score=141.64  Aligned_cols=256  Identities=12%  Similarity=0.086  Sum_probs=160.9

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCccccc
Q 014302          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFL  189 (427)
Q Consensus       111 g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~  189 (427)
                      +..+++++.|+.+++||+.+.  ........+ ..+.+++|+|++..+++++. ++.+.+|+..         ++     
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~--~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~---------~~-----   63 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATL--EVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLA---------TG-----   63 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCC--ceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECC---------CC-----
Confidence            356888999999999998776  333333333 34788999999965556554 5889999987         11     


Q ss_pred             ccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc---------------CceEEe--ccCCeEEEEEccCCCEEE
Q 014302          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL---------------GTPIRR--GFGGLSILKWSPTGDYFF  252 (427)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~---------------~~~~~~--~~~~v~~~~~sp~g~~l~  252 (427)
                                 .....+..  ...+..++|+|+|+.+..               ...+..  ....+..++|+|+|++++
T Consensus        64 -----------~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~  130 (300)
T TIGR03866        64 -----------EVIGTLPS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVV  130 (300)
T ss_pred             -----------cEEEeccC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEE
Confidence                       11111221  122356778887774321               011111  123467889999999999


Q ss_pred             EEecCC-cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccccccccceee
Q 014302          253 AAKFDG-TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       253 ~~~~dg-~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~  329 (427)
                      ++..++ .+.+||.++.+.............++|+|+|++|++++..++.+.+|++.....  .+..+..     .  ..
T Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-----~--~~  203 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-----G--VH  203 (300)
T ss_pred             EEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-----c--cc
Confidence            877665 467789887665333223345678999999999987766667888888876421  1110000     0  00


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW  409 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~  409 (427)
                      ........++|+|++++++++..+  +   +.|.+||+++++.......      +.  .+.+++|.|+   |..|.++.
T Consensus       204 ~~~~~~~~i~~s~dg~~~~~~~~~--~---~~i~v~d~~~~~~~~~~~~------~~--~~~~~~~~~~---g~~l~~~~  267 (300)
T TIGR03866       204 PEAVQPVGIKLTKDGKTAFVALGP--A---NRVAVVDAKTYEVLDYLLV------GQ--RVWQLAFTPD---EKYLLTTN  267 (300)
T ss_pred             cccCCccceEECCCCCEEEEEcCC--C---CeEEEEECCCCcEEEEEEe------CC--CcceEEECCC---CCEEEEEc
Confidence            011134568899999987664322  2   3599999988776533211      11  3568899986   66676654


Q ss_pred             -eCceEEEEec
Q 014302          410 -SSGFCCTYPL  419 (427)
Q Consensus       410 -~~g~i~~~~~  419 (427)
                       .+|.|.+|++
T Consensus       268 ~~~~~i~v~d~  278 (300)
T TIGR03866       268 GVSNDVSVIDV  278 (300)
T ss_pred             CCCCeEEEEEC
Confidence             5899999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=4.7e-18  Score=166.84  Aligned_cols=248  Identities=15%  Similarity=0.221  Sum_probs=171.5

Q ss_pred             CceeeeEEcCCCCE----EEEEeCCCeEEEEEccCC----CCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEE
Q 014302          100 VDLQGVSWHQHKHI----VAFISGSTQVIVRDYEDS----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIW  170 (427)
Q Consensus       100 ~~V~~l~~sp~g~~----lat~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw  170 (427)
                      ...+.++|.+.|..    ||.|..||.|.+||...-    ..........|.+.|..+.|++....+||+|.+ +.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            36789999998875    899999999999998762    222334455699999999999999889999976 999999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-  249 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-  249 (427)
                      |++++..+....                                                 -......|.+++|+..-. 
T Consensus       145 Dlnn~~tP~~~~-------------------------------------------------~~~~~~eI~~lsWNrkvqh  175 (1049)
T KOG0307|consen  145 DLNKPETPFTPG-------------------------------------------------SQAPPSEIKCLSWNRKVSH  175 (1049)
T ss_pred             ccCCcCCCCCCC-------------------------------------------------CCCCcccceEeccchhhhH
Confidence            998321110000                                                 000124677888876554 


Q ss_pred             EEEEEecCCcEEEEEcCCCCcc-ccc--cCCCCeeEEEECCCCCE-EEEEEcCCc--eeeeeeeCCC---CCCccccccc
Q 014302          250 YFFAAKFDGTFYLWETNTWTSE-PWS--STSGFVTGATWDPEGRM-ILLAFAGSL--TLGSIHFASK---PPSLDAHLLP  320 (427)
Q Consensus       250 ~l~~~~~dg~v~iwd~~~~~~~-~~~--~~~~~v~~v~~spdg~~-l~~~~~~~~--~i~~~~~~~~---~~~~~~~~~~  320 (427)
                      .|++++.+|.+.|||++..+.. .+.  .....+..+.|+|++.. |++++.++.  .|..|++...   ...+++|.. 
T Consensus       176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~-  254 (1049)
T KOG0307|consen  176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR-  254 (1049)
T ss_pred             HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc-
Confidence            4558889999999999988653 232  23345889999998754 444444442  4444444332   123344544 


Q ss_pred             cccccceeeccCCceeEEEECCCC-CEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  399 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g-~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  399 (427)
                                   .|.+|.|++.+ ++|++|   +.|   +.|.+|+.++++.+.-.|.+     +.  -...+.|.|. 
T Consensus       255 -------------GilslsWc~~D~~lllSs---gkD---~~ii~wN~~tgEvl~~~p~~-----~n--W~fdv~w~pr-  307 (1049)
T KOG0307|consen  255 -------------GILSLSWCPQDPRLLLSS---GKD---NRIICWNPNTGEVLGELPAQ-----GN--WCFDVQWCPR-  307 (1049)
T ss_pred             -------------ceeeeccCCCCchhhhcc---cCC---CCeeEecCCCceEeeecCCC-----Cc--ceeeeeecCC-
Confidence                         89999999776 667664   444   55999999999887433321     11  1336778887 


Q ss_pred             CCCceeEEEeeCceEEEEeccccCCC
Q 014302          400 KQGPLLSVCWSSGFCCTYPLIFRSHL  425 (427)
Q Consensus       400 ~~g~~l~v~~~~g~i~~~~~~~~~~~  425 (427)
                       .-.++++.+-+|+|.+|.+.=.++.
T Consensus       308 -~P~~~A~asfdgkI~I~sl~~~~~~  332 (1049)
T KOG0307|consen  308 -NPSVMAAASFDGKISIYSLQGTDTD  332 (1049)
T ss_pred             -CcchhhhheeccceeeeeeecCCcc
Confidence             3458999999999999998766544

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=5.3e-17  Score=138.17  Aligned_cols=273  Identities=15%  Similarity=0.186  Sum_probs=179.3

Q ss_pred             CCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302           96 LLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus        96 ~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      .+.+|  .|..++-....+.+.+++.|.+.+||.++.+  .+...+.+|.+.|+++.|++.+..++..++|++.+||...
T Consensus       143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a  220 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA  220 (481)
T ss_pred             hhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence            34455  6777777777779999999999999999998  6778888999999999999998444444567889999743


Q ss_pred             ----CCCCc-cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-cCceEEeccCCeEEEEEccC
Q 014302          174 ----YPGNA-ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-LGTPIRRGFGGLSILKWSPT  247 (427)
Q Consensus       174 ----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~~~~~~~~~~v~~~~~sp~  247 (427)
                          .|.+. .....+            ..+....   +  ...+-+.-.-..||..+. .-..+.+|.+.|.+..|-..
T Consensus       221 v~~~vP~~~a~~~hSs------------EeE~e~s---D--e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g  283 (481)
T KOG0300|consen  221 VNWEVPSNNAPSDHSS------------EEEEEHS---D--EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG  283 (481)
T ss_pred             hcCcCCCCCCCCCCCc------------hhhhhcc---c--ccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence                11110 000000            0000000   0  011111111112222211 11235568888999999999


Q ss_pred             CCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC---Ccccccccccc
Q 014302          248 GDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP---SLDAHLLPVDL  323 (427)
Q Consensus       248 g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~  323 (427)
                      |+.+++++.|.+-.+||++++... .+.+|....+.++-+|..+.+++ ++.+.+.+.|++.....   .+.||..    
T Consensus       284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvT-sSrDtTFRLWDFReaI~sV~VFQGHtd----  358 (481)
T KOG0300|consen  284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVT-SSRDTTFRLWDFREAIQSVAVFQGHTD----  358 (481)
T ss_pred             cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEE-eccCceeEeccchhhcceeeeeccccc----
Confidence            999999999999999999999984 45599999999999998776665 56666777777775321   3344444    


Q ss_pred             ccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc
Q 014302          324 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP  403 (427)
Q Consensus       324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~  403 (427)
                                .|+++.|..+.+ +++   |++|   .+|+|||+++...    |...|+- ...  ...++...   .+.
T Consensus       359 ----------tVTS~vF~~dd~-vVS---gSDD---rTvKvWdLrNMRs----plATIRt-dS~--~NRvavs~---g~~  411 (481)
T KOG0300|consen  359 ----------TVTSVVFNTDDR-VVS---GSDD---RTVKVWDLRNMRS----PLATIRT-DSP--ANRVAVSK---GHP  411 (481)
T ss_pred             ----------ceeEEEEecCCc-eee---cCCC---ceEEEeeeccccC----cceeeec-CCc--cceeEeec---CCc
Confidence                      789999997654 545   7777   6799999987543    2223332 111  22333322   356


Q ss_pred             eeEEEeeCceEEEEec
Q 014302          404 LLSVCWSSGFCCTYPL  419 (427)
Q Consensus       404 ~l~v~~~~g~i~~~~~  419 (427)
                      ++++--.+-+|.+|+|
T Consensus       412 iIAiPhDNRqvRlfDl  427 (481)
T KOG0300|consen  412 IIAIPHDNRQVRLFDL  427 (481)
T ss_pred             eEEeccCCceEEEEec
Confidence            7888877888888876

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=1.5e-16  Score=135.92  Aligned_cols=261  Identities=18%  Similarity=0.225  Sum_probs=171.0

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCC---CC--------cceeeccCCcCCeeEEEEc-------cCCCceEEEec
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDS---GK--------DACILTSDSQRDVKVLEWR-------PNGGRSLSVGC  163 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~---~~--------~~~~~~~~~~~~v~~l~~s-------p~~~~~la~g~  163 (427)
                      ...+.|+|||..|++-+.|..+++|++...   ..        ............|....|-       |+. .++++++
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-~l~a~ss  130 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-NLFAVSS  130 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc-ceeeecc
Confidence            456899999999999999999999998654   11        1122222345678888887       555 4555554


Q ss_pred             -CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------
Q 014302          164 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------  231 (427)
Q Consensus       164 -~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------  231 (427)
                       +.-|++||.-.+....+.                   ...+..+  ....-.+++|+|||..+..|-.           
T Consensus       131 r~~PIh~wdaftG~lraSy-------------------~~ydh~d--e~taAhsL~Fs~DGeqlfaGykrcirvFdt~Rp  189 (406)
T KOG2919|consen  131 RDQPIHLWDAFTGKLRASY-------------------RAYDHQD--EYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRP  189 (406)
T ss_pred             ccCceeeeeccccccccch-------------------hhhhhHH--hhhhheeEEecCCCCeEeecccceEEEeeccCC
Confidence             488999998611111000                   0011000  1223358999999998654411           


Q ss_pred             ----------EE---eccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEE
Q 014302          232 ----------IR---RGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAF  296 (427)
Q Consensus       232 ----------~~---~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~  296 (427)
                                .+   +..+-+.+++|+|-.. .++.++....+-||.-.......+. +|.+.|+.++|.++|+.|++++
T Consensus       190 Gr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa  269 (406)
T KOG2919|consen  190 GRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA  269 (406)
T ss_pred             CCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc
Confidence                      00   0134577899999665 7889999999999987776664444 8999999999999999999998


Q ss_pred             cCCceeeeeeeCCCCC---CccccccccccccceeeccCCceeEEEE--CCCCCEEEEEEecCCCcceeEEEEEEecc-C
Q 014302          297 AGSLTLGSIHFASKPP---SLDAHLLPVDLPDIVSLTGSQGIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARR-T  370 (427)
Q Consensus       297 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~v~~--sp~g~~La~~~~~~~d~~~g~i~vwd~~~-~  370 (427)
                      ..+..|-.|++.....   .+..|...             .-..+-|  .|+|++||+   |+.+   |.|++||++. +
T Consensus       270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~-------------TNQRI~FDld~~~~~Las---G~td---G~V~vwdlk~~g  330 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSRDPVYALERHVGD-------------TNQRILFDLDPKGEILAS---GDTD---GSVRVWDLKDLG  330 (406)
T ss_pred             cCCCeEEEEeehhccchhhhhhhhccC-------------ccceEEEecCCCCceeec---cCCC---ccEEEEecCCCC
Confidence            8888999999887422   23333220             1133444  599999999   7777   7799999987 4


Q ss_pred             ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302          371 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC  414 (427)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i  414 (427)
                      ..+.+.+     ...+.  ...++++|.   -.+||++ +..+|
T Consensus       331 n~~sv~~-----~~sd~--vNgvslnP~---mpilats-sGqr~  363 (406)
T KOG2919|consen  331 NEVSVTG-----NYSDT--VNGVSLNPI---MPILATS-SGQRI  363 (406)
T ss_pred             Ccccccc-----ccccc--ccceecCcc---cceeeec-cCcee
Confidence            4232111     11222  346788886   5567666 33443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.77  E-value=1.4e-16  Score=153.20  Aligned_cols=231  Identities=17%  Similarity=0.203  Sum_probs=167.5

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEecc
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPS  173 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~  173 (427)
                      +.+|  .|.++++..-+..|++|+.|.+++|||+.++  .......+|...|.++...+   .++++| .|.+|++|+++
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEecc
Confidence            4455  8999999887889999999999999998887  67777789999999987653   344444 66999999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                               .+                .++.                          .+++|.+.|.++..+  +.++++
T Consensus       320 ---------n~----------------~~l~--------------------------l~~~h~~~V~~v~~~--~~~lvs  346 (537)
T KOG0274|consen  320 ---------NG----------------ACLN--------------------------LLRGHTGPVNCVQLD--EPLLVS  346 (537)
T ss_pred             ---------Cc----------------ceEE--------------------------EeccccccEEEEEec--CCEEEE
Confidence                     11                2222                          233467788898887  889999


Q ss_pred             EecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CC--Cccccccccccccceee
Q 014302          254 AKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PP--SLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       254 ~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~--~~~~~~~~~~~~~~~~~  329 (427)
                      |+.|++|++||+.++++. ...+|...|.++.+... .+++.++-+ +.|++|++..+ ..  .+.+|..          
T Consensus       347 gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D-~~IkvWdl~~~~~c~~tl~~h~~----------  414 (537)
T KOG0274|consen  347 GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD-TTIKVWDLRTKRKCIHTLQGHTS----------  414 (537)
T ss_pred             EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec-cceEeecCCchhhhhhhhcCCcc----------
Confidence            999999999999999884 44599999999988765 777766544 58888888876 22  3334433          


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW  409 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~  409 (427)
                          -+..+  ...+++|++   ++.|   ++|++||.+.++++....     +. .......+++.     ...+.++.
T Consensus       415 ----~v~~l--~~~~~~Lvs---~~aD---~~Ik~WD~~~~~~~~~~~-----~~-~~~~v~~l~~~-----~~~il~s~  471 (537)
T KOG0274|consen  415 ----LVSSL--LLRDNFLVS---SSAD---GTIKLWDAEEGECLRTLE-----GR-HVGGVSALALG-----KEEILCSS  471 (537)
T ss_pred             ----ccccc--ccccceeEe---cccc---ccEEEeecccCceeeeec-----cC-CcccEEEeecC-----cceEEEEe
Confidence                23333  345778888   5666   679999999998874432     21 11112233232     24577777


Q ss_pred             eCceEEEEecc
Q 014302          410 SSGFCCTYPLI  420 (427)
Q Consensus       410 ~~g~i~~~~~~  420 (427)
                      .+|.+.+|++.
T Consensus       472 ~~~~~~l~dl~  482 (537)
T KOG0274|consen  472 DDGSVKLWDLR  482 (537)
T ss_pred             cCCeeEEEecc
Confidence            99999999753

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.76  E-value=1.5e-17  Score=141.15  Aligned_cols=231  Identities=16%  Similarity=0.209  Sum_probs=163.7

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS  173 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~  173 (427)
                      |-+|  +|+++.|||....|++|+.|++|+++|+....-+..........+|.+++|+|.| .+|++|.+ ..+++||++
T Consensus       168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~  246 (430)
T KOG0640|consen  168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVN  246 (430)
T ss_pred             hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC-ceEEEecCCCceeEEecc
Confidence            4455  8999999999999999999999999999876322222233445689999999999 56666665 899999998


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------E-Eec
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------I-RRG  235 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~-~~~  235 (427)
                               +-              +......-...+...|+++.+++.|++-.+++.                 + +.|
T Consensus       247 ---------T~--------------QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH  303 (430)
T KOG0640|consen  247 ---------TY--------------QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH  303 (430)
T ss_pred             ---------ce--------------eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc
Confidence                     11              222222233345788999999999987443321                 1 124


Q ss_pred             c-CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc-----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302          236 F-GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  308 (427)
Q Consensus       236 ~-~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~  308 (427)
                      . ..|.+..|..+|+++++++.|..|++|.+.++.+.. +.     +....-+...|+....++++-....+.+..|+..
T Consensus       304 ~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR  383 (430)
T KOG0640|consen  304 GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR  383 (430)
T ss_pred             CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc
Confidence            3 568888999999999999999999999999988743 33     1222334566888888888766666677777766


Q ss_pred             CCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          309 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      +...           .....+.|.+.+..+.-||.+.-+.+   ++.|   ..+++|--+
T Consensus       384 tadr-----------~~l~slgHn~a~R~i~HSP~~p~FmT---csdD---~raRFWyrr  426 (430)
T KOG0640|consen  384 TADR-----------VALLSLGHNGAVRWIVHSPVEPAFMT---CSDD---FRARFWYRR  426 (430)
T ss_pred             chhh-----------hhhcccCCCCCceEEEeCCCCCceee---eccc---ceeeeeeec
Confidence            5310           01223345568899999999999988   4555   459999653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.76  E-value=1.4e-16  Score=147.99  Aligned_cols=266  Identities=15%  Similarity=0.269  Sum_probs=178.9

Q ss_pred             CCCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccC
Q 014302           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSY  174 (427)
Q Consensus        96 ~l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~  174 (427)
                      ....|.|+.++|-|||..|+.+. +..+.|||.+.+  .......+|.+.|++++|+.|| ..+|+| .|..|.+|.-..
T Consensus         9 ~~~~hci~d~afkPDGsqL~lAA-g~rlliyD~ndG--~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~kl   84 (1081)
T KOG1538|consen    9 DKAEHCINDIAFKPDGTQLILAA-GSRLLVYDTSDG--TLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKL   84 (1081)
T ss_pred             cccccchheeEECCCCceEEEec-CCEEEEEeCCCc--ccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccc
Confidence            34556899999999999877774 557789998887  4556668999999999999999 666666 558899998752


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------------EE--eccCCeE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------IR--RGFGGLS  240 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------~~--~~~~~v~  240 (427)
                                                  -..++..+...|.|+.|+|-...+++...            ..  .....+.
T Consensus        85 ----------------------------EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~  136 (1081)
T KOG1538|consen   85 ----------------------------EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRII  136 (1081)
T ss_pred             ----------------------------cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEE
Confidence                                        22355556888999999998777665432            11  1235678


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCC-----EEEEEEcCCceeeeeeeCCCCC
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGR-----MILLAFAGSLTLGSIHFASKPP  312 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~-----~l~~~~~~~~~i~~~~~~~~~~  312 (427)
                      +.+|..||++|+.|-.+|+|.|-+-.........   +...+|.+++|+|...     .+++...+. ++....+..   
T Consensus       137 ~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q-TLSFy~LsG---  212 (1081)
T KOG1538|consen  137 CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ-TLSFYQLSG---  212 (1081)
T ss_pred             EeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc-eeEEEEecc---
Confidence            8999999999999999999988754322222222   5778999999999642     222221111 111111111   


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  392 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (427)
                          ...-      ..-...-...++.+-++|.|+.+   |+.|   +.+.+|.-+.-. +     |.+- . .+.=...
T Consensus       213 ----~~Ig------k~r~L~FdP~CisYf~NGEy~Li---GGsd---k~L~~fTR~Gvr-L-----GTvg-~-~D~WIWt  268 (1081)
T KOG1538|consen  213 ----KQIG------KDRALNFDPCCISYFTNGEYILL---GGSD---KQLSLFTRDGVR-L-----GTVG-E-QDSWIWT  268 (1081)
T ss_pred             ----eeec------ccccCCCCchhheeccCCcEEEE---ccCC---CceEEEeecCeE-E-----eecc-c-cceeEEE
Confidence                1110      00001125578888999999999   6766   568888654321 1     2211 1 1222335


Q ss_pred             EEeccCCCCCceeEEEeeCceEEEEeccccCC
Q 014302          393 FSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSH  424 (427)
Q Consensus       393 ~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~~  424 (427)
                      ++.+|+   ++..++|+-||+|.-|.+.|++-
T Consensus       269 V~~~PN---sQ~v~~GCqDGTiACyNl~fSTV  297 (1081)
T KOG1538|consen  269 VQAKPN---SQYVVVGCQDGTIACYNLIFSTV  297 (1081)
T ss_pred             EEEccC---CceEEEEEccCeeehhhhHHhHh
Confidence            778897   66799999999999999988763

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.76  E-value=1.6e-17  Score=156.55  Aligned_cols=187  Identities=15%  Similarity=0.236  Sum_probs=139.9

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .|+++.||+... +|++|+.||+|++||+...  ....+..+....|+++.|+|.....++++.+ |.+++||+..+.. 
T Consensus       135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~--~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-  211 (839)
T KOG0269|consen  135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSK--KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-  211 (839)
T ss_pred             ceeeeeeccCCccEEEecCCCceEEEEeeecc--cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-
Confidence            899999999876 8889999999999999887  4555556677899999999988789999988 8888999982110 


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                                             +.                          ..+..|.++|.++.|+|++.+||+|+.|+
T Consensus       212 -----------------------~~--------------------------~k~~AH~GpV~c~nwhPnr~~lATGGRDK  242 (839)
T KOG0269|consen  212 -----------------------CE--------------------------KKLTAHNGPVLCLNWHPNREWLATGGRDK  242 (839)
T ss_pred             -----------------------HH--------------------------HHhhcccCceEEEeecCCCceeeecCCCc
Confidence                                   11                          12445889999999999999999999999


Q ss_pred             cEEEEEcCCCCcc--ccccCCCCeeEEEECCCCCEEEEEEc--CCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          259 TFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       259 ~v~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      .|+|||+.+.+..  .......++..|.|-|+.++.+..++  .+..+++|++...-.           +......|...
T Consensus       243 ~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI-----------P~~t~~eH~~~  311 (839)
T KOG0269|consen  243 MVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI-----------PYATFLEHTDS  311 (839)
T ss_pred             cEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc-----------cceeeeccCcc
Confidence            9999999876653  33367789999999998887654443  334677777766411           11223334446


Q ss_pred             eeEEEECC-CCCEEEEE
Q 014302          335 IEKIAWDA-SGERLAVS  350 (427)
Q Consensus       335 i~~v~~sp-~g~~La~~  350 (427)
                      ++.++|.. |-..|.++
T Consensus       312 vt~i~W~~~d~~~l~s~  328 (839)
T KOG0269|consen  312 VTGIAWDSGDRINLWSC  328 (839)
T ss_pred             ccceeccCCCceeeEee
Confidence            78888874 44445453

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.75  E-value=1.2e-16  Score=138.02  Aligned_cols=227  Identities=17%  Similarity=0.208  Sum_probs=167.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|..+++|+...||.+++.|+.|+.||+...  +....+++|-..|.+++..|.-+.++.+|.|.+++|||+.       
T Consensus       195 ~vr~vavS~rHpYlFs~gedk~VKCwDLe~n--kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-------  265 (460)
T KOG0285|consen  195 TVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN--KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-------  265 (460)
T ss_pred             eeeeeeecccCceEEEecCCCeeEEEechhh--hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeec-------
Confidence            7899999999999999999999999999988  7778889999999999999998555555567999999998       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCc-------------ccCc---eEEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFP-------------GLGT---PIRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l-------------~~~~---~~~~~~~~v~~~~  243 (427)
                        +.                ..+..+.+| ..+|..+.+.| |++.+             ..|.   .+..|...+.+++
T Consensus       266 --tr----------------~~V~~l~GH-~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~  326 (460)
T KOG0285|consen  266 --TR----------------ASVHVLSGH-TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC  326 (460)
T ss_pred             --cc----------------ceEEEecCC-CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEe
Confidence              22                335556776 88888888876 44431             1221   2445778899999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  322 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  322 (427)
                      .+|....+|+++.| .|+-|++..+.. ..+.+|..-+.+++...||-++ + +++.+.+..|+..+...-..++..+. 
T Consensus       327 lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~-~-G~dng~~~fwdwksg~nyQ~~~t~vq-  402 (460)
T KOG0285|consen  327 LHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV-S-GGDNGSIMFWDWKSGHNYQRGQTIVQ-  402 (460)
T ss_pred             cCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCceEE-E-cCCceEEEEEecCcCccccccccccc-
Confidence            99999888888754 589999988776 4456899999999998887544 3 45555777776655421111111111 


Q ss_pred             cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                         .-.+.....|.+.+|+..|..|++   +..|   ++|++|.-.
T Consensus       403 ---pGSl~sEagI~as~fDktg~rlit---~ead---KtIk~~keD  439 (460)
T KOG0285|consen  403 ---PGSLESEAGIFASCFDKTGSRLIT---GEAD---KTIKMYKED  439 (460)
T ss_pred             ---CCccccccceeEEeecccCceEEe---ccCC---cceEEEecc
Confidence               112223347999999999999998   5666   669999754

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.74  E-value=4.7e-16  Score=145.11  Aligned_cols=258  Identities=15%  Similarity=0.143  Sum_probs=177.9

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeE-EEEcc-CCCceEEEecCCeEEEEec
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-LEWRP-NGGRSLSVGCKGGICIWAP  172 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~-l~~sp-~~~~~la~g~~~~i~iw~~  172 (427)
                      +.+|  +|..++..+. ..+++++.|+++++|+-............+|.+-|.. +++-+ ++.+++..+.|..+.+|..
T Consensus        10 l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~   88 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL   88 (745)
T ss_pred             eccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence            3455  6777776544 4888999999999998765544343445556666655 77765 3324666667788999998


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc--------------cCceEEeccCC
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG--------------LGTPIRRGFGG  238 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~--------------~~~~~~~~~~~  238 (427)
                      .                         ...+...+++| ...|.+++...++.++.              ....+.+|...
T Consensus        89 ~-------------------------~~~P~~~LkgH-~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~as  142 (745)
T KOG0301|consen   89 S-------------------------QAEPLYTLKGH-KSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTAS  142 (745)
T ss_pred             C-------------------------CCCchhhhhcc-ccceeeeecCCcCceEecccccceEEecchhhhcccCCcchh
Confidence            7                         33456667777 77788887766666211              11225669999


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CCCccc
Q 014302          239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PPSLDA  316 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~~~~~  316 (427)
                      |++++.-|.+ .+++|+.|++|++|.-  ++. ..+.+|...|..+++-+++.+| + +++++.|+.|++... ...+.+
T Consensus       143 VWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~fl-S-csNDg~Ir~w~~~ge~l~~~~g  217 (745)
T KOG0301|consen  143 VWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFL-S-CSNDGSIRLWDLDGEVLLEMHG  217 (745)
T ss_pred             eeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeE-e-ecCCceEEEEeccCceeeeeec
Confidence            9999988888 7889999999999975  333 5566999999999999977665 3 466778888888554 224445


Q ss_pred             cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302          317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  396 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  396 (427)
                      |..              -|.+++...++..+++   .++|   +++++|+..  .+.+.     +.-|...  ..++.+.
T Consensus       218 htn--------------~vYsis~~~~~~~Ivs---~gED---rtlriW~~~--e~~q~-----I~lPtts--iWsa~~L  268 (745)
T KOG0301|consen  218 HTN--------------FVYSISMALSDGLIVS---TGED---RTLRIWKKD--ECVQV-----ITLPTTS--IWSAKVL  268 (745)
T ss_pred             cce--------------EEEEEEecCCCCeEEE---ecCC---ceEEEeecC--ceEEE-----EecCccc--eEEEEEe
Confidence            544              6789997788888888   4667   779999986  33321     2222222  2344444


Q ss_pred             cCCCCCceeEEEeeCceEEEEec
Q 014302          397 DKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       397 ~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++   | -+.||.+||+|.+|+-
T Consensus       269 ~N---g-DIvvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  269 LN---G-DIVVGGSDGRVRVFTV  287 (745)
T ss_pred             eC---C-CEEEeccCceEEEEEe
Confidence            43   2 2778889999999974

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.74  E-value=5e-17  Score=150.48  Aligned_cols=224  Identities=13%  Similarity=0.130  Sum_probs=171.7

Q ss_pred             eeEEc-CCCCEEEEEeCCCeEEEEEccCCCCc----ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          104 GVSWH-QHKHIVAFISGSTQVIVRDYEDSGKD----ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       104 ~l~~s-p~g~~lat~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      ++..+ |.+++|.+|+.||.|++|++......    .......|...|+++...-+++.++.+++|.+|++|+....+  
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~--  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN--  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--
Confidence            44444 45668999999999999998776332    133345599999999999999888999999999999997221  


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEe-CCCCCCcccCce--------------------------
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW-GPDGRFPGLGTP--------------------------  231 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-spdg~~l~~~~~--------------------------  231 (427)
                                           -.++..++.| ...|.|+++ .++..++++|..                          
T Consensus       107 ---------------------~~c~stir~H-~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~  164 (735)
T KOG0308|consen  107 ---------------------TFCMSTIRTH-KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN  164 (735)
T ss_pred             ---------------------chhHhhhhcc-cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence                                 2456667777 888888888 555555433311                          


Q ss_pred             --EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302          232 --IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  308 (427)
Q Consensus       232 --~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~  308 (427)
                        ..++..+|++++-.+.|..|++|+..+.+++||-++.+. ..+.+|...|..+..++||..++++++++ +|++|++.
T Consensus       165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-tIrlWdLg  243 (735)
T KOG0308|consen  165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-TIRLWDLG  243 (735)
T ss_pred             cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc-eEEeeecc
Confidence              114567899999999998999999999999999999887 55669999999999999999999876655 88888888


Q ss_pred             CCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          309 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      ......            +...|...|+++..+|+=+.+.+   |+.|   |.|..=|+++.
T Consensus       244 qQrCl~------------T~~vH~e~VWaL~~~~sf~~vYs---G~rd---~~i~~Tdl~n~  287 (735)
T KOG0308|consen  244 QQRCLA------------TYIVHKEGVWALQSSPSFTHVYS---GGRD---GNIYRTDLRNP  287 (735)
T ss_pred             ccceee------------eEEeccCceEEEeeCCCcceEEe---cCCC---CcEEecccCCc
Confidence            763311            11223347899999999888866   8888   55888888774

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.74  E-value=7.1e-17  Score=140.41  Aligned_cols=197  Identities=15%  Similarity=0.317  Sum_probs=140.8

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcce-eeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDAC-ILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~  177 (427)
                      .=++|+|||-.. .|++|..-+.|++|...++.+..- .-..+|...|-.|+|||....+||++ +|++|+|||+.    
T Consensus       213 EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiR----  288 (440)
T KOG0302|consen  213 EGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIR----  288 (440)
T ss_pred             cceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEec----
Confidence            457899999554 688888889999999888733221 22245999999999999987888776 67999999997    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                           .+              .         + .                .....+.|.+.|..++|+.+-.+||+|+.|
T Consensus       289 -----s~--------------~---------~-~----------------~~~~~kAh~sDVNVISWnr~~~lLasG~Dd  323 (440)
T KOG0302|consen  289 -----SG--------------P---------K-K----------------AAVSTKAHNSDVNVISWNRREPLLASGGDD  323 (440)
T ss_pred             -----CC--------------C---------c-c----------------ceeEeeccCCceeeEEccCCcceeeecCCC
Confidence                 11              0         0 0                011234577889999999888899999999


Q ss_pred             CcEEEEEcCCCCcc----ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-------Cccccccccccccc
Q 014302          258 GTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-------SLDAHLLPVDLPDI  326 (427)
Q Consensus       258 g~v~iwd~~~~~~~----~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~  326 (427)
                      |+++|||+++.+..    .+..|..+|+++.|+|....++.+++.+..+.+|++.-...       ...+   ..+++..
T Consensus       324 Gt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~---L~dlPpQ  400 (440)
T KOG0302|consen  324 GTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG---LQDLPPQ  400 (440)
T ss_pred             ceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc---hhcCCce
Confidence            99999999988764    55589999999999997665555666666888888875321       1111   1133322


Q ss_pred             eeecc--CCceeEEEECCCCCEEEE
Q 014302          327 VSLTG--SQGIEKIAWDASGERLAV  349 (427)
Q Consensus       327 ~~~~~--~~~i~~v~~sp~g~~La~  349 (427)
                      ..+.|  ...+..|.|++.-.-+++
T Consensus       401 LLFVHqGQke~KevhWH~QiPG~lv  425 (440)
T KOG0302|consen  401 LLFVHQGQKEVKEVHWHRQIPGLLV  425 (440)
T ss_pred             eEEEecchhHhhhheeccCCCCeEE
Confidence            22333  347889999976554444

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.74  E-value=5.9e-17  Score=142.42  Aligned_cols=232  Identities=13%  Similarity=0.164  Sum_probs=151.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|+++.|.+++..+++++.|+.+++|+++..  .......+|.+.|+++.|.-....++..+.|.++++||+...--   
T Consensus       221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~--r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C---  295 (459)
T KOG0288|consen  221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSL--RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC---  295 (459)
T ss_pred             CcceeeecCCCceEEeecCCCceeeeeccch--hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe---
Confidence            7999999999999999999999999999887  55666678999999999997764444444569999999972100   


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                           .......+....-.......+.+|....|.  .|+-.+.  ..-..+. ..+.|+++..+++|..|++++.|.++
T Consensus       296 -----~kt~l~~S~cnDI~~~~~~~~SgH~DkkvR--fwD~Rs~--~~~~sv~-~gg~vtSl~ls~~g~~lLsssRDdtl  365 (459)
T KOG0288|consen  296 -----SKTVLPGSQCNDIVCSISDVISGHFDKKVR--FWDIRSA--DKTRSVP-LGGRVTSLDLSMDGLELLSSSRDDTL  365 (459)
T ss_pred             -----eccccccccccceEecceeeeecccccceE--EEeccCC--ceeeEee-cCcceeeEeeccCCeEEeeecCCCce
Confidence                 000000011111000011122222222211  1110000  0000122 34589999999999999999999999


Q ss_pred             EEEEcCCCCccc-cc----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCC-c
Q 014302          261 YLWETNTWTSEP-WS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ-G  334 (427)
Q Consensus       261 ~iwd~~~~~~~~-~~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  334 (427)
                      .+.|+++.+... +.    ......+.++|||+++|++.|+. ++.+++|++...+.....           ...++. .
T Consensus       366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~-dgsv~iW~v~tgKlE~~l-----------~~s~s~~a  433 (459)
T KOG0288|consen  366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA-DGSVYIWSVFTGKLEKVL-----------SLSTSNAA  433 (459)
T ss_pred             eeeecccccEEEEeeccccccccccceeEECCCCceeeeccC-CCcEEEEEccCceEEEEe-----------ccCCCCcc
Confidence            999999887632 22    23345889999999999997654 458999988875322111           111111 6


Q ss_pred             eeEEEECCCCCEEEEEEecCCCcceeEEEEE
Q 014302          335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIY  365 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vw  365 (427)
                      |++++|+|.|.+|+++   +.+   +.+.+|
T Consensus       434 I~s~~W~~sG~~Llsa---dk~---~~v~lW  458 (459)
T KOG0288|consen  434 ITSLSWNPSGSGLLSA---DKQ---KAVTLW  458 (459)
T ss_pred             eEEEEEcCCCchhhcc---cCC---cceEec
Confidence            9999999999999884   444   568888

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.73  E-value=2.8e-16  Score=138.05  Aligned_cols=162  Identities=17%  Similarity=0.363  Sum_probs=121.8

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCc-------ceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEe
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKD-------ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWA  171 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~-------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~  171 (427)
                      +|.++.|+++.. .||+|+.|..|++|-++.....       .......|...|+++.|+|+| .+||+|.| +.+.+|.
T Consensus        15 pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWK   93 (434)
T ss_pred             ceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEE
Confidence            799999999887 9999999999999998776111       122335699999999999999 79999988 8899998


Q ss_pred             ccCCCCccccccCcccccccccCCC-CcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGP-GTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY  250 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~  250 (427)
                      ... .++....+         +.+. ...|..                          -..++.|...++.++|+|++.+
T Consensus        94 ~~~-~~~~~~d~---------e~~~~ke~w~v--------------------------~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   94 QGD-VRIFDADT---------EADLNKEKWVV--------------------------KKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             ecC-cCCccccc---------hhhhCccceEE--------------------------EEEecccccchhhhhccCCCce
Confidence            751 00000000         0000 001111                          1234557889999999999999


Q ss_pred             EEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCC
Q 014302          251 FFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGS  299 (427)
Q Consensus       251 l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~  299 (427)
                      +++++.|..+++||+..++..... .|...+..++|.|-++++++-+.+.
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr  187 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR  187 (434)
T ss_pred             eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence            999999999999999999986554 8999999999999999988755544

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=1.2e-17  Score=156.16  Aligned_cols=216  Identities=14%  Similarity=0.273  Sum_probs=162.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~  179 (427)
                      .|.++..-..++.+++|+.|..+-||.....  .....+.+|..+|.++.|++.. .+|+.|.. ++|++||+.      
T Consensus        30 av~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDle------  100 (825)
T KOG0267|consen   30 AVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLE------  100 (825)
T ss_pred             hhceeeeeccceeeccCCCceeeccccccCC--chhheeeccCCcceeeecCcch-hhhcccccCCceeeeehh------
Confidence            5666666666789999999999999988766  3444567899999999999988 77777765 899999998      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                                         +.+.+..                          +.+|...+.++.|+|-+.|.+.|+.|..
T Consensus       101 -------------------eAk~vrt--------------------------Ltgh~~~~~sv~f~P~~~~~a~gStdtd  135 (825)
T KOG0267|consen  101 -------------------EAKIVRT--------------------------LTGHLLNITSVDFHPYGEFFASGSTDTD  135 (825)
T ss_pred             -------------------hhhhhhh--------------------------hhccccCcceeeeccceEEecccccccc
Confidence                               2122332                          2335567888889999999999999999


Q ss_pred             EEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--CCccccccccccccceeeccCCcee
Q 014302          260 FYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGSQGIE  336 (427)
Q Consensus       260 v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~  336 (427)
                      +.+||++...| ..+.+|...+..+.|+|+|++++.++.+. .+.+|+.....  ..+.+|              .+.+.
T Consensus       136 ~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~-tvki~d~~agk~~~ef~~~--------------e~~v~  200 (825)
T KOG0267|consen  136 LKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN-TVKIWDLTAGKLSKEFKSH--------------EGKVQ  200 (825)
T ss_pred             ceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc-eeeeecccccccccccccc--------------ccccc
Confidence            99999997777 45557889999999999999999876544 56666554431  123333              34778


Q ss_pred             EEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC
Q 014302          337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  398 (427)
Q Consensus       337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  398 (427)
                      ++.|+|..-+|+.   |+.|   ++|++||+++-+++.       .+..+...+.|.+|.|.
T Consensus       201 sle~hp~e~Lla~---Gs~d---~tv~f~dletfe~I~-------s~~~~~~~v~~~~fn~~  249 (825)
T KOG0267|consen  201 SLEFHPLEVLLAP---GSSD---RTVRFWDLETFEVIS-------SGKPETDGVRSLAFNPD  249 (825)
T ss_pred             ccccCchhhhhcc---CCCC---ceeeeeccceeEEee-------ccCCccCCceeeeecCC
Confidence            9999998888877   8888   779999998765541       12223445668888876

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.73  E-value=3.5e-16  Score=144.69  Aligned_cols=269  Identities=13%  Similarity=0.135  Sum_probs=167.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~  179 (427)
                      .|..+.|-|....|++++.|.++++||+.........+..+|.+.|.+++|.|+...++++|++ +.|.|||+...+.. 
T Consensus       102 AifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d-  180 (720)
T KOG0321|consen  102 AIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVD-  180 (720)
T ss_pred             eeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchh-
Confidence            7999999996669999999999999999988433344578999999999999999899999876 88999999721100 


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC--CCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec-
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--PDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-  256 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-  256 (427)
                          .    .         +..+......+...+ +-..-.  ..-+.++.+..+.   +.|+.+ +..|...||+++. 
T Consensus       181 ----~----~---------e~~~~~~~~~~n~~p-tpskp~~kr~~k~kA~s~ti~---ssvTvv-~fkDe~tlaSaga~  238 (720)
T KOG0321|consen  181 ----A----L---------EEFDNRIYGRHNTAP-TPSKPLKKRIRKWKAASNTIF---SSVTVV-LFKDESTLASAGAA  238 (720)
T ss_pred             ----h----H---------HHHhhhhhccccCCC-CCCchhhccccccccccCcee---eeeEEE-EEeccceeeeccCC
Confidence                0    0         000000011110000 000000  0000111111111   124444 5568889996665 


Q ss_pred             CCcEEEEEcCCCCcc---------ccccC---CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC----Cccccccc
Q 014302          257 DGTFYLWETNTWTSE---------PWSST---SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP----SLDAHLLP  320 (427)
Q Consensus       257 dg~v~iwd~~~~~~~---------~~~~~---~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~----~~~~~~~~  320 (427)
                      |+.|+|||++.....         .+..+   ...+.+++....|.+|+..+. |+.|+.|++.....    .+.++...
T Consensus       239 D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~  317 (720)
T KOG0321|consen  239 DSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNS  317 (720)
T ss_pred             CcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccc
Confidence            999999999987642         11123   345677777778899987777 55999999887422    22222210


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                                 ...|. -..+||+.+|++   |+.|   ...++|.+.+.+.-...    ..|  ....+.+++|.|.- 
T Consensus       318 -----------sf~vk-s~lSpd~~~l~S---gSsd---~~ayiw~vs~~e~~~~~----l~G--ht~eVt~V~w~pS~-  372 (720)
T KOG0321|consen  318 -----------SFYVK-SELSPDDCSLLS---GSSD---EQAYIWVVSSPEAPPAL----LLG--HTREVTTVRWLPSA-  372 (720)
T ss_pred             -----------eeeee-eecCCCCceEec---cCCC---cceeeeeecCccCChhh----hhC--cceEEEEEeecccc-
Confidence                       00122 246899999999   7777   45999999875542111    112  23335688888852 


Q ss_pred             CCceeEEEeeCceEEEEec
Q 014302          401 QGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       401 ~g~~l~v~~~~g~i~~~~~  419 (427)
                      ... ++.|..|-++.+|.+
T Consensus       373 ~t~-v~TcSdD~~~kiW~l  390 (720)
T KOG0321|consen  373 TTP-VATCSDDFRVKIWRL  390 (720)
T ss_pred             CCC-ceeeccCcceEEEec
Confidence            233 445578999999998

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.73  E-value=3.5e-16  Score=139.47  Aligned_cols=242  Identities=16%  Similarity=0.184  Sum_probs=170.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcc---------------eeec-cCCcCCeeEEEEccCCCceEEEecC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA---------------CILT-SDSQRDVKVLEWRPNGGRSLSVGCK  164 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~---------------~~~~-~~~~~~v~~l~~sp~~~~~la~g~~  164 (427)
                      .|.+++++|++.+..+++.+++|.=|++.++....               .... ..|...+.+++.|+|| ++|++|..
T Consensus       144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg-kylatgg~  222 (479)
T KOG0299|consen  144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG-KYLATGGR  222 (479)
T ss_pred             cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC-cEEEecCC
Confidence            89999999999999999999999999987762110               0011 2688889999999999 67777655


Q ss_pred             -CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEE
Q 014302          165 -GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILK  243 (427)
Q Consensus       165 -~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~  243 (427)
                       ..|.||+.+         +.                ..++                          .++.|.+.|.+++
T Consensus       223 d~~v~Iw~~~---------t~----------------ehv~--------------------------~~~ghr~~V~~L~  251 (479)
T KOG0299|consen  223 DRHVQIWDCD---------TL----------------EHVK--------------------------VFKGHRGAVSSLA  251 (479)
T ss_pred             CceEEEecCc---------cc----------------chhh--------------------------cccccccceeeee
Confidence             778899998         11                1111                          2455788899999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  322 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  322 (427)
                      |-..-..|++++.|++|++|++..... ..+.+|...|.++.-..-++.+ +.+..|.+.++|.+.+...          
T Consensus       252 fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~v-tVGgrDrT~rlwKi~eesq----------  320 (479)
T KOG0299|consen  252 FRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCV-TVGGRDRTVRLWKIPEESQ----------  320 (479)
T ss_pred             eecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceE-EeccccceeEEEeccccce----------
Confidence            988888899999999999999987766 4555999999999887766655 4555666888888865421          


Q ss_pred             cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe--eeeeeeCCCCCCC---ceeEEecc
Q 014302          323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS--LIGFIRGPGDNPK---PVAFSFHD  397 (427)
Q Consensus       323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~f~~  397 (427)
                         .....+.+.+.+++|=.+. .+++   |+++   |.|.+|++.....+...  +.|..........   ...++-.|
T Consensus       321 ---lifrg~~~sidcv~~In~~-Hfvs---GSdn---G~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~  390 (479)
T KOG0299|consen  321 ---LIFRGGEGSIDCVAFINDE-HFVS---GSDN---GSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP  390 (479)
T ss_pred             ---eeeeCCCCCeeeEEEeccc-ceee---ccCC---ceEEEeeecccCceeEeeccccccCCccccccccceeeeEecc
Confidence               1112234478899987654 4556   6766   78999999776654333  2333322111111   12344555


Q ss_pred             CCCCCceeEEEeeCceEEEEe
Q 014302          398 KFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       398 ~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .   ..++|.|.-+|.|.+|-
T Consensus       391 ~---sdL~asGS~~G~vrLW~  408 (479)
T KOG0299|consen  391 G---SDLLASGSWSGCVRLWK  408 (479)
T ss_pred             c---CceEEecCCCCceEEEE
Confidence            3   56899998899888885

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.73  E-value=1.6e-16  Score=146.68  Aligned_cols=238  Identities=15%  Similarity=0.243  Sum_probs=160.8

Q ss_pred             CCCCCceeeeEEcCC-CCEEEEEeCCCeEEEEEccCCC-----CcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEE
Q 014302           96 LLPEVDLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSG-----KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGIC  168 (427)
Q Consensus        96 ~l~~~~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~  168 (427)
                      +..+..|+.+.|.|- ..+||+++.||.|+||.+..++     ..+......|...|+++.|+|--..+|++++ +.+|+
T Consensus       624 l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  624 LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE  703 (1012)
T ss_pred             cccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence            344458999999995 4699999999999999997762     2233445678999999999998767887775 48999


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG  248 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g  248 (427)
                      +||+.         ++                .    +                      ...+.+|.+.|..++|||||
T Consensus       704 lWDl~---------~~----------------~----~----------------------~~~l~gHtdqIf~~AWSpdG  732 (1012)
T KOG1445|consen  704 LWDLA---------NA----------------K----L----------------------YSRLVGHTDQIFGIAWSPDG  732 (1012)
T ss_pred             eeehh---------hh----------------h----h----------------------hheeccCcCceeEEEECCCC
Confidence            99997         11                0    0                      11345688899999999999


Q ss_pred             CEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc-ccccccccc
Q 014302          249 DYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD-AHLLPVDLP  324 (427)
Q Consensus       249 ~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~  324 (427)
                      +.+++.+.||+|++|+.++.....+.   .....-..+.|.-||+++++.+-+...-+.+.+++... +. ++..     
T Consensus       733 r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~-l~~~pl~-----  806 (1012)
T KOG1445|consen  733 RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT-LDLRPLY-----  806 (1012)
T ss_pred             cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh-ccCCcce-----
Confidence            99999999999999999887764433   22244457889999999998776665555555555321 11 1111     


Q ss_pred             cceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          325 DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       325 ~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                       ...+...-.+.--.+++|...|..+  |-.|   ..|++|.+-....+. .|+..+..+....   .++|+++..
T Consensus       807 -t~~lDvaps~LvP~YD~Ds~~lflt--GKGD---~~v~~yEv~~esPy~-lpl~~f~sp~~hq---Gl~fl~K~~  872 (1012)
T KOG1445|consen  807 -TQVLDVAPSPLVPHYDYDSNVLFLT--GKGD---RFVNMYEVIYESPYL-LPLAPFMSPVGHQ---GLAFLQKLK  872 (1012)
T ss_pred             -eeeecccCccccccccCCCceEEEe--cCCC---ceEEEEEecCCCcee-eecccccCCCccc---ceeeecccc
Confidence             1111111123333567888888776  6666   559999986655443 3333333333222   466777644

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.73  E-value=2.4e-16  Score=141.64  Aligned_cols=248  Identities=15%  Similarity=0.269  Sum_probs=170.0

Q ss_pred             CCceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302           99 EVDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  176 (427)
Q Consensus        99 ~~~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~  176 (427)
                      .+.+.++.|+.... .+|+.+.|..+++|.-+....+...+.......-.|++..... .++++|+ .+.|+|||+.   
T Consensus        34 ~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~---  109 (673)
T KOG4378|consen   34 EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS-LYEISGGQSGCVKIWDLR---  109 (673)
T ss_pred             CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc-eeeeccCcCceeeehhhH---
Confidence            34689999998775 3344567889999976554222222222222244555555555 4555554 4889999997   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEec-cCC
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRG-FGG  238 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~-~~~  238 (427)
                                            ...+.+.++.| ...|+++.++....+++...                 .+... .+.
T Consensus       110 ----------------------~kl~hr~lkdh-~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs  166 (673)
T KOG4378|consen  110 ----------------------AKLIHRFLKDH-QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS  166 (673)
T ss_pred             ----------------------HHHHhhhccCC-cceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCe
Confidence                                  22455667777 69999999988777765332                 12222 345


Q ss_pred             eEEEEEccCCCEEE-EEecCCcEEEEEcCCCCcc-cc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          239 LSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSE-PW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       239 v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~-~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      |.-+.|||..++|+ +++.+|.|.+||+....+. .+ ..|..+...+||+|.+..|++.-+-+..|+++++..+...  
T Consensus       167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~--  244 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST--  244 (673)
T ss_pred             EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc--
Confidence            67899999999877 8999999999999877763 33 3899999999999998888877777778888877765221  


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  395 (427)
                                 ..+....+...|+|+++|.+|+.   |+..   |.|..||++..+.    |...+.+....  +.|++|
T Consensus       245 -----------~~l~y~~Plstvaf~~~G~~L~a---G~s~---G~~i~YD~R~~k~----Pv~v~sah~~s--Vt~vaf  301 (673)
T KOG4378|consen  245 -----------DRLTYSHPLSTVAFSECGTYLCA---GNSK---GELIAYDMRSTKA----PVAVRSAHDAS--VTRVAF  301 (673)
T ss_pred             -----------ceeeecCCcceeeecCCceEEEe---ecCC---ceEEEEecccCCC----CceEeeecccc--eeEEEe
Confidence                       11222236799999999999988   6666   7799999987543    22333333333  568888


Q ss_pred             ccC
Q 014302          396 HDK  398 (427)
Q Consensus       396 ~~~  398 (427)
                      .+.
T Consensus       302 q~s  304 (673)
T KOG4378|consen  302 QPS  304 (673)
T ss_pred             eec
Confidence            775

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.3e-15  Score=127.84  Aligned_cols=247  Identities=15%  Similarity=0.261  Sum_probs=164.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEcc-CCCceEEEec-CCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRP-NGGRSLSVGC-KGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp-~~~~~la~g~-~~~i~iw~~~~~~  176 (427)
                      -|+++.|.+.|+++|+++.|++|+|||....  ..........|.+.|..+.|.+ .-.+++|+.+ |+++.||.-....
T Consensus        15 lihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~   94 (361)
T KOG2445|consen   15 LIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS   94 (361)
T ss_pred             eeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence            4899999999999999999999999997554  3334444456999999999974 4337888775 5999999764100


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC--CCcccCc------------------------
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG--RFPGLGT------------------------  230 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~l~~~~------------------------  230 (427)
                                      .+..+.+|.....+... ...|+.+.|.|.-  -.+++..                        
T Consensus        95 ----------------~~~~~~~Wv~~ttl~Ds-rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E  157 (361)
T KOG2445|consen   95 ----------------EEAHGRRWVRRTTLVDS-RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE  157 (361)
T ss_pred             ----------------cccccceeEEEEEeecC-CcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence                            11123366666666665 7889999998843  2222110                        


Q ss_pred             ------eEEeccCCeEEEEEccCC---CEEEEEecC-----CcEEEEEcCCCCc-----cccccCCCCeeEEEECCCC--
Q 014302          231 ------PIRRGFGGLSILKWSPTG---DYFFAAKFD-----GTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEG--  289 (427)
Q Consensus       231 ------~~~~~~~~v~~~~~sp~g---~~l~~~~~d-----g~v~iwd~~~~~~-----~~~~~~~~~v~~v~~spdg--  289 (427)
                            +...+.....|+.|+|.-   .+||+|+.+     +.++||.......     ..+..|..+|.+++|.|+-  
T Consensus       158 i~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr  237 (361)
T KOG2445|consen  158 IQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR  237 (361)
T ss_pred             hhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC
Confidence                  111245677899999743   478888765     4789997655431     2344899999999999962  


Q ss_pred             --CEEEEEEcCCceeeeeeeCCCCCCc--cccccc-----cccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcce
Q 014302          290 --RMILLAFAGSLTLGSIHFASKPPSL--DAHLLP-----VDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYK  359 (427)
Q Consensus       290 --~~l~~~~~~~~~i~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~  359 (427)
                        ..||+++ .+| ++++++......+  +....+     .++.....+. |.+.|+.|.|+-.|..|++   .++|   
T Consensus       238 ~y~~lAvA~-kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS---tGdD---  309 (361)
T KOG2445|consen  238 SYHLLAVAT-KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS---TGDD---  309 (361)
T ss_pred             ceeeEEEee-cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee---cCCC---
Confidence              3455554 444 7788777532111  111111     1222233233 4559999999999999988   5566   


Q ss_pred             eEEEEEEeccCce
Q 014302          360 GLIAIYDARRTPL  372 (427)
Q Consensus       360 g~i~vwd~~~~~~  372 (427)
                      |+|++|...-...
T Consensus       310 G~VRLWkany~n~  322 (361)
T KOG2445|consen  310 GCVRLWKANYNNL  322 (361)
T ss_pred             ceeeehhhhhhhh
Confidence            8999998765443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.72  E-value=4.9e-16  Score=137.95  Aligned_cols=204  Identities=18%  Similarity=0.326  Sum_probs=153.5

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .|.+++|+..-+ .||+|+.|.+|++||++.+  ++......|.+.|.+++|+|....+|.+|+. +++.+.|.+.+++ 
T Consensus       245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g--~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-  321 (463)
T KOG0270|consen  245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTG--KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-  321 (463)
T ss_pred             HHHHHHhccccceeEEecCCCceEEEEEcCCC--CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-
Confidence            577888988765 8999999999999999998  5666666799999999999998888888865 9999999871110 


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFD  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d  257 (427)
                                                          ....|.              ..+.|-.++|.|.....+ +++.|
T Consensus       322 ------------------------------------s~~~wk--------------~~g~VEkv~w~~~se~~f~~~tdd  351 (463)
T KOG0270|consen  322 ------------------------------------SGKEWK--------------FDGEVEKVAWDPHSENSFFVSTDD  351 (463)
T ss_pred             ------------------------------------cCceEE--------------eccceEEEEecCCCceeEEEecCC
Confidence                                                011121              245678888988776544 88899


Q ss_pred             CcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC-ccccccccccccceeeccCCc
Q 014302          258 GTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS-LDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      |+|+-+|+|......+.  .|...|.++++++.-..++++.+.++.+.+|++....+. ...|...+           +.
T Consensus       352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~-----------~r  420 (463)
T KOG0270|consen  352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL-----------GR  420 (463)
T ss_pred             ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccc-----------cc
Confidence            99999999998654443  899999999999988888777788888999988876442 22222211           13


Q ss_pred             eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ..+++++|+-.++.+.  |+..   +.++|||+.+...+
T Consensus       421 l~c~~~~~~~a~~la~--GG~k---~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  421 LHCFALDPDVAFTLAF--GGEK---AVLRVWDIFTNSPV  454 (463)
T ss_pred             eeecccCCCcceEEEe--cCcc---ceEEEeecccChhH
Confidence            5777888887776664  5555   56999999776543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2.2e-16  Score=140.71  Aligned_cols=200  Identities=14%  Similarity=0.234  Sum_probs=144.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .+.....||++++||..+..|.|.|-...++   .......-.+.|.++.|+.|+..+++++++|.|.+|++.       
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~---eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~-------  374 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTK---ELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR-------  374 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhh---hhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecC-------
Confidence            4667788999999999999999999554444   333334456789999999999889999999999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                                        ...++..+..             +|            .-.-++++.|+++.+||+|+..|.|
T Consensus       375 ------------------~~~~~~rf~D-------------~G------------~v~gts~~~S~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  375 ------------------QNSCLHRFVD-------------DG------------SVHGTSLCISLNGSYLATGSDSGIV  411 (514)
T ss_pred             ------------------CcceEEEEee-------------cC------------ccceeeeeecCCCceEEeccCcceE
Confidence                              1112211110             11            1134578888999999999999999


Q ss_pred             EEEEcCCCC----cc---ccccCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302          261 YLWETNTWT----SE---PWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       261 ~iwd~~~~~----~~---~~~~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      .|||..+-.    +.   .+......|.++.|++|++.|+.++... ..++.+++.+... +      -.++...  ..-
T Consensus       412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-F------sNfP~~n--~~v  482 (514)
T KOG2055|consen  412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-F------SNFPTSN--TKV  482 (514)
T ss_pred             EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee-e------ccCCCCC--Ccc
Confidence            999965432    11   1225677899999999999999876544 4788888877521 0      0111110  011


Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      +.|++|+|||.|.+||+   |..+   |.|.+|.+.
T Consensus       483 g~vtc~aFSP~sG~lAv---GNe~---grv~l~kL~  512 (514)
T KOG2055|consen  483 GHVTCMAFSPNSGYLAV---GNEA---GRVHLFKLH  512 (514)
T ss_pred             cceEEEEecCCCceEEe---ecCC---CceeeEeec
Confidence            37899999999999999   7777   679999885

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=2e-15  Score=122.82  Aligned_cols=216  Identities=19%  Similarity=0.282  Sum_probs=144.8

Q ss_pred             CcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCcee--eeE
Q 014302          142 SQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT--ALS  218 (427)
Q Consensus       142 ~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~  218 (427)
                      -...|.+++|+|.| .+.|+|++ .+++|-...                           ..+. ++..+...+.  .+.
T Consensus        31 dsqairav~fhp~g-~lyavgsnskt~ric~yp---------------------------~l~~-~r~~hea~~~pp~v~   81 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYP---------------------------ALID-LRHAHEAAKQPPSVL   81 (350)
T ss_pred             chhheeeEEecCCC-ceEEeccCCceEEEEccc---------------------------cccC-cccccccccCCCeEE
Confidence            34579999999999 78888887 777776543                           0011 1111111111  111


Q ss_pred             eCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc------cccccCCCCeeEEEECCC----
Q 014302          219 WGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS------EPWSSTSGFVTGATWDPE----  288 (427)
Q Consensus       219 ~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~v~~v~~spd----  288 (427)
                                .+.-+.|.+.|+|.+|||+|.+|++|+.|++|++.-.....+      ..+..|.+.|..++|-.+    
T Consensus        82 ----------~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~  151 (350)
T KOG0641|consen   82 ----------CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG  151 (350)
T ss_pred             ----------eeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcC
Confidence                      112234788999999999999999999999999986655443      234479999999999643    


Q ss_pred             CCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          289 GRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       289 g~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                      |..|++++.++..|++-+-...++  .+.+|.              +.|.++ ++-+|-.+|+   |+.|   .+|++||
T Consensus       152 ~~il~s~gagdc~iy~tdc~~g~~~~a~sght--------------ghilal-yswn~~m~~s---gsqd---ktirfwd  210 (350)
T KOG0641|consen  152 GAILASAGAGDCKIYITDCGRGQGFHALSGHT--------------GHILAL-YSWNGAMFAS---GSQD---KTIRFWD  210 (350)
T ss_pred             ceEEEecCCCcceEEEeecCCCCcceeecCCc--------------ccEEEE-EEecCcEEEc---cCCC---ceEEEEe
Confidence            567777777776777665554422  233333              255554 3445777777   8888   7799999


Q ss_pred             eccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          367 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      ++-+.++...-..+-.+..+...+..++..|.   |.||+.|-.|..+.+|++.
T Consensus       211 lrv~~~v~~l~~~~~~~glessavaav~vdps---grll~sg~~dssc~lydir  261 (350)
T KOG0641|consen  211 LRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS---GRLLASGHADSSCMLYDIR  261 (350)
T ss_pred             eeccceeeeccCcccCCCcccceeEEEEECCC---cceeeeccCCCceEEEEee
Confidence            99888876554433333323333456677775   9999999999999999974

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.71  E-value=1.7e-15  Score=126.23  Aligned_cols=211  Identities=18%  Similarity=0.234  Sum_probs=153.0

Q ss_pred             eeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceee
Q 014302          137 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA  216 (427)
Q Consensus       137 ~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  216 (427)
                      ....+|..+++.+.++.+|+.++.++.|....+|--.                                           
T Consensus         4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-------------------------------------------   40 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-------------------------------------------   40 (327)
T ss_pred             cccccCccccceEEecCCCcEEEEecCCCCceEEEec-------------------------------------------
Confidence            4557899999999999999777777888999999764                                           


Q ss_pred             eEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEE
Q 014302          217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  296 (427)
Q Consensus       217 ~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~  296 (427)
                           +|+.++   .+.+|.+.|+++..+-+.+++++|+.|.++++||+.++++.........|..+.|+++|.++++..
T Consensus        41 -----nGerlG---ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~t  112 (327)
T KOG0643|consen   41 -----NGERLG---TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILAST  112 (327)
T ss_pred             -----CCceee---eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEe
Confidence                 122222   466789999999999999999999999999999999999977777888999999999999988765


Q ss_pred             cCC----ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          297 AGS----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       297 ~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      ...    +.+.++++.+.........     +-.........++.+.|+|-+++|+.   |.++   |.|..||++++..
T Consensus       113 D~~mg~~~~v~~fdi~~~~~~~~s~e-----p~~kI~t~~skit~a~Wg~l~~~ii~---Ghe~---G~is~~da~~g~~  181 (327)
T KOG0643|consen  113 DKQMGYTCFVSVFDIRDDSSDIDSEE-----PYLKIPTPDSKITSALWGPLGETIIA---GHED---GSISIYDARTGKE  181 (327)
T ss_pred             hhhcCcceEEEEEEccCChhhhcccC-----ceEEecCCccceeeeeecccCCEEEE---ecCC---CcEEEEEcccCce
Confidence            443    3566666654321111110     01122223357899999999999988   7777   7799999999865


Q ss_pred             EEEeeeeeeeCCC-CCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          373 ISLSLIGFIRGPG-DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       373 ~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      +       ++... .......++|.++   ......+..|-+-.+|++
T Consensus       182 ~-------v~s~~~h~~~Ind~q~s~d---~T~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  182 L-------VDSDEEHSSKINDLQFSRD---RTYFITGSKDTTAKLVDV  219 (327)
T ss_pred             e-------eechhhhccccccccccCC---cceEEecccCccceeeec
Confidence            4       22211 1113446667665   445666767777777764

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.71  E-value=3.2e-16  Score=144.78  Aligned_cols=255  Identities=19%  Similarity=0.294  Sum_probs=168.5

Q ss_pred             EEcCCCCEEEE--EeCCCeEEEEEccCCCCcceeeccC--CcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccc
Q 014302          106 SWHQHKHIVAF--ISGSTQVIVRDYEDSGKDACILTSD--SQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAAS  180 (427)
Q Consensus       106 ~~sp~g~~lat--~~~d~~v~vwd~~~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~  180 (427)
                      -|+-+..++|+  ++..|.|-||+++..++.+-....+  ....|+++.|.|-....||++++ +.|+||.+..++-+..
T Consensus       586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence            35555666665  3567999999998874433222222  44579999999988888998877 8899999973221111


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CEEEEEecCCc
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFDGT  259 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~  259 (427)
                      ..                                            .....+..|...|+++.|+|-- ..|++++.|.+
T Consensus       666 ~~--------------------------------------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T  701 (1012)
T KOG1445|consen  666 EM--------------------------------------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDST  701 (1012)
T ss_pred             cC--------------------------------------------CcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence            00                                            0123566788899999999965 46669999999


Q ss_pred             EEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-CccccccccccccceeeccCCceeE
Q 014302          260 FYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVDLPDIVSLTGSQGIEK  337 (427)
Q Consensus       260 v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~  337 (427)
                      |++||+++.+. ..+.+|...|..++|||||+.+++.+.++ .+++++-.+... ..++.. |          .++.-..
T Consensus       702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-~~rVy~Prs~e~pv~Eg~g-p----------vgtRgAR  769 (1012)
T KOG1445|consen  702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG-TLRVYEPRSREQPVYEGKG-P----------VGTRGAR  769 (1012)
T ss_pred             eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc-eEEEeCCCCCCCccccCCC-C----------ccCccee
Confidence            99999999887 45669999999999999999999887665 666655444321 111111 1          1123456


Q ss_pred             EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302          338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~  417 (427)
                      +.|--||++++++  |-+......|.+||.++...--+.    ..+....  +.-+..+-++..+.++..|=.|-+|..|
T Consensus       770 i~wacdgr~viv~--Gfdk~SeRQv~~Y~Aq~l~~~pl~----t~~lDva--ps~LvP~YD~Ds~~lfltGKGD~~v~~y  841 (1012)
T KOG1445|consen  770 ILWACDGRIVIVV--GFDKSSERQVQMYDAQTLDLRPLY----TQVLDVA--PSPLVPHYDYDSNVLFLTGKGDRFVNMY  841 (1012)
T ss_pred             EEEEecCcEEEEe--cccccchhhhhhhhhhhccCCcce----eeeeccc--CccccccccCCCceEEEecCCCceEEEE
Confidence            7788899998875  333222356999998764321111    1111111  1122223233456788889889999999


Q ss_pred             eccccCC
Q 014302          418 PLIFRSH  424 (427)
Q Consensus       418 ~~~~~~~  424 (427)
                      .+.|++-
T Consensus       842 Ev~~esP  848 (1012)
T KOG1445|consen  842 EVIYESP  848 (1012)
T ss_pred             EecCCCc
Confidence            9998874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.70  E-value=1.4e-14  Score=130.72  Aligned_cols=290  Identities=12%  Similarity=0.134  Sum_probs=179.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC-cc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN-AA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~-~~  179 (427)
                      -|.|++|.++|+.+ +|..+|.|.||+....  ......+.|.+.|.++..-.+| .+|..|.|..|..||-+.... +.
T Consensus       248 ~Vl~v~F~engdvi-TgDS~G~i~Iw~~~~~--~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~k~r~~  323 (626)
T KOG2106|consen  248 FVLCVTFLENGDVI-TGDSGGNILIWSKGTN--RISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYRKLRET  323 (626)
T ss_pred             EEEEEEEcCCCCEE-eecCCceEEEEeCCCc--eEEeEeeecCCceEEEEEecCc-cEeecCccceEEeccccccccccc
Confidence            69999999999755 8999999999997555  3444445899999999999999 788866678999999542111 00


Q ss_pred             cc--ccCcccccccccCCCCcceeE----------------eehhcccCCCceeeeEeCCCCCCcccCce----------
Q 014302          180 SV--RSGAASFLGALSRGPGTRWTL----------------VDFLRSQNGEQITALSWGPDGRFPGLGTP----------  231 (427)
Q Consensus       180 ~~--~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~v~~~~~spdg~~l~~~~~----------  231 (427)
                      .+  ..|+...   +.. +.+++..                .....+| ......++.+|+..++.+...          
T Consensus       324 elPe~~G~iRt---v~e-~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh-~delwgla~hps~~q~~T~gqdk~v~lW~~~  398 (626)
T KOG2106|consen  324 ELPEQFGPIRT---VAE-GKGDILVGTTRNFILQGTLENGFTLTVQGH-GDELWGLATHPSKNQLLTCGQDKHVRLWNDH  398 (626)
T ss_pred             cCchhcCCeeE---Eec-CCCcEEEeeccceEEEeeecCCceEEEEec-ccceeeEEcCCChhheeeccCcceEEEccCC
Confidence            00  0000000   000 0000000                0011122 334456777776655443321          


Q ss_pred             ----EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302          232 ----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  307 (427)
Q Consensus       232 ----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~  307 (427)
                          -+....+..++.|+|.| .++.|+..|...+.|.++...........++..+.|+|+|.+||.++ .++.|+++.+
T Consensus       399 k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs-~d~~iyiy~V  476 (626)
T KOG2106|consen  399 KLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS-HDNHIYIYRV  476 (626)
T ss_pred             ceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec-CCCeEEEEEE
Confidence                12234678888899999 88899999999999988865555555588999999999999999875 5558888888


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE-------e---e
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL-------S---L  377 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~-------~---~  377 (427)
                      ......+.          ......+.+|+.+.||+|+++|.+   .+.|   -.|..|....-+....       +   -
T Consensus       477 s~~g~~y~----------r~~k~~gs~ithLDwS~Ds~~~~~---~S~d---~eiLyW~~~~~~~~ts~kDvkW~t~~c~  540 (626)
T KOG2106|consen  477 SANGRKYS----------RVGKCSGSPITHLDWSSDSQFLVS---NSGD---YEILYWKPSECKQITSVKDVKWATYTCT  540 (626)
T ss_pred             CCCCcEEE----------EeeeecCceeEEeeecCCCceEEe---ccCc---eEEEEEccccCcccceecceeeeeeEEE
Confidence            76422111          011112258999999999999988   4444   3499994322111100       0   1


Q ss_pred             eeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          378 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       378 ~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .||.-..+....  .+.-......+.+||.|-..|.|++|.-
T Consensus       541 lGF~v~g~s~~t--~i~a~~rs~~~~~lA~gdd~g~v~lf~y  580 (626)
T KOG2106|consen  541 LGFEVFGGSDGT--DINAVARSHCEKLLASGDDFGKVHLFSY  580 (626)
T ss_pred             EEEEEecccCCc--hHHHhhhhhhhhhhhccccCceEEEEcc
Confidence            222211111111  1111122335779999999999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.69  E-value=5.1e-15  Score=129.73  Aligned_cols=216  Identities=16%  Similarity=0.244  Sum_probs=154.2

Q ss_pred             CCCCCCCCC--ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCC-----CCcceeeccCCcCCeeEEEEccCCCceE-EEe
Q 014302           92 DHVHLLPEV--DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDS-----GKDACILTSDSQRDVKVLEWRPNGGRSL-SVG  162 (427)
Q Consensus        92 ~~~~~l~~~--~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~-----~~~~~~~~~~~~~~v~~l~~sp~~~~~l-a~g  162 (427)
                      ....+..+|  .|..++|+|.. +.||+|+.|.+|.||.+...     ..++.....+|...|--++|+|.-.++| ++|
T Consensus        72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc
Confidence            334445566  89999999966 48999999999999998765     2244566678999999999999876655 456


Q ss_pred             cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEE
Q 014302          163 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSIL  242 (427)
Q Consensus       163 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~  242 (427)
                      +|+.|.+|++.         ++                ..+-                          .+. |..-|+++
T Consensus       152 ~Dn~v~iWnv~---------tg----------------eali--------------------------~l~-hpd~i~S~  179 (472)
T KOG0303|consen  152 SDNTVSIWNVG---------TG----------------EALI--------------------------TLD-HPDMVYSM  179 (472)
T ss_pred             CCceEEEEecc---------CC----------------ceee--------------------------ecC-CCCeEEEE
Confidence            78999999998         22                0010                          011 56689999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCC-CeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSG-FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~-~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      +|+.||.+|++.+.|+.|||||.++++...-. .|.+ .-..+.|-.+|. +++++-..-..+++-+|+....-+    |
T Consensus       180 sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e----P  254 (472)
T KOG0303|consen  180 SFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE----P  254 (472)
T ss_pred             EeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC----c
Confidence            99999999999999999999999998874332 4443 445677888888 444444443566777776421100    0


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      +   ....+..+..|.---|++|.+.|..|  |-.|   +.|+.|.+.....
T Consensus       255 ~---~~~elDtSnGvl~PFyD~dt~ivYl~--GKGD---~~IRYyEit~d~P  298 (472)
T KOG0303|consen  255 I---ALQELDTSNGVLLPFYDPDTSIVYLC--GKGD---SSIRYFEITNEPP  298 (472)
T ss_pred             c---eeEEeccCCceEEeeecCCCCEEEEE--ecCC---cceEEEEecCCCc
Confidence            0   12233444567777789999999998  5555   5599999987663

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.8e-15  Score=127.13  Aligned_cols=237  Identities=14%  Similarity=0.216  Sum_probs=142.7

Q ss_pred             ccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeE
Q 014302          139 TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (427)
Q Consensus       139 ~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (427)
                      ..+|.+.|++++|+.||+.+..++.|+.|+||+++ +..     ..              +-.+++ . .-.....+.+.
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~-DF~-----~~--------------eHr~~R-~-nve~dhpT~V~  139 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVR-DFE-----NK--------------EHRCIR-Q-NVEYDHPTRVV  139 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecc-hhh-----hh--------------hhhHhh-c-cccCCCceEEE
Confidence            36899999999999999666666677999999986 100     00              000000 0 00122345667


Q ss_pred             eCCCCCCc----ccCce--------------------------EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCC
Q 014302          219 WGPDGRFP----GLGTP--------------------------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  268 (427)
Q Consensus       219 ~spdg~~l----~~~~~--------------------------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~  268 (427)
                      |.||-+-+    ..+..                          -+.|.-.+..+-....+++|++++.|..|.+|+++ +
T Consensus       140 FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G  218 (420)
T KOG2096|consen  140 FAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G  218 (420)
T ss_pred             ECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-C
Confidence            77765531    11111                          11234455556666788899999999999999998 4


Q ss_pred             Cc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeee-CCCCCCccccccccccccceeec-cCCceeEEEECCCCC
Q 014302          269 TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF-ASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGE  345 (427)
Q Consensus       269 ~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~  345 (427)
                      +. .........-...+.||+|+++++++-.- -+++|.. ..+..+++.-.      ....+. |...|..++||++.+
T Consensus       219 q~L~~idtnq~~n~~aavSP~GRFia~~gFTp-DVkVwE~~f~kdG~fqev~------rvf~LkGH~saV~~~aFsn~S~  291 (420)
T KOG2096|consen  219 QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-DVKVWEPIFTKDGTFQEVK------RVFSLKGHQSAVLAAAFSNSST  291 (420)
T ss_pred             ceeeeeccccccccceeeCCCCcEEEEecCCC-CceEEEEEeccCcchhhhh------hhheeccchhheeeeeeCCCcc
Confidence            44 33334555566788999999999765443 4445542 22322221111      111222 334899999999999


Q ss_pred             EEEEEEecCCCcceeEEEEEEeccC-------ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          346 RLAVSYKGGDDIYKGLIAIYDARRT-------PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       346 ~La~~~~~~~d~~~g~i~vwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .+++   .+.|   |+++|||+.-.       .++..-+ .+...+  ..+++.++..|.   |..||+. ....+++|-
T Consensus       292 r~vt---vSkD---G~wriwdtdVrY~~~qDpk~Lk~g~-~pl~aa--g~~p~RL~lsP~---g~~lA~s-~gs~l~~~~  358 (420)
T KOG2096|consen  292 RAVT---VSKD---GKWRIWDTDVRYEAGQDPKILKEGS-APLHAA--GSEPVRLELSPS---GDSLAVS-FGSDLKVFA  358 (420)
T ss_pred             eeEE---EecC---CcEEEeeccceEecCCCchHhhcCC-cchhhc--CCCceEEEeCCC---CcEEEee-cCCceEEEE
Confidence            9999   4555   77999997421       1111000 111122  234778888886   7888887 455666653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.68  E-value=2.5e-14  Score=129.08  Aligned_cols=261  Identities=15%  Similarity=0.197  Sum_probs=180.2

Q ss_pred             ceeeeEEcCC--CCEEEEE--eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQH--KHIVAFI--SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~--g~~lat~--~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      .|.|++||+-  |.+|+..  +.+..+.|||++.+..  ..-....++.|....|+|.+..++.+.+.+.+.+|+..   
T Consensus       156 GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~--~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~---  230 (626)
T KOG2106|consen  156 GVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK--LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR---  230 (626)
T ss_pred             cceeeeecccCCCceEEEecCCCccccchhhchhhhc--cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc---
Confidence            7999999984  4466554  4456788999988722  22223345678999999999999999999999999886   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc--C--------------ceEEeccCCeE
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL--G--------------TPIRRGFGGLS  240 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~--------------~~~~~~~~~v~  240 (427)
                                         ++.-.+....++.+....|.|++|.++|..+.-  +              .....|.++|.
T Consensus       231 -------------------~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~  291 (626)
T KOG2106|consen  231 -------------------GGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF  291 (626)
T ss_pred             -------------------CCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE
Confidence                               122334455677777788999999998886320  0              11236899999


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCc--ccc---------------------------------------ccCCCC
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPW---------------------------------------SSTSGF  279 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~---------------------------------------~~~~~~  279 (427)
                      +++.-.+|..|- |+.|+.|..||-.-.+.  ..+                                       ..|...
T Consensus       292 ~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~de  370 (626)
T KOG2106|consen  292 SLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDE  370 (626)
T ss_pred             EEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccc
Confidence            999999997666 99999999998321111  000                                       134455


Q ss_pred             eeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcce
Q 014302          280 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYK  359 (427)
Q Consensus       280 v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~  359 (427)
                      ...++.+|+...++++ +.++.+.+|+  +.+..+             ......++.++.|+|.| .||+   |...   
T Consensus       371 lwgla~hps~~q~~T~-gqdk~v~lW~--~~k~~w-------------t~~~~d~~~~~~fhpsg-~va~---Gt~~---  427 (626)
T KOG2106|consen  371 LWGLATHPSKNQLLTC-GQDKHVRLWN--DHKLEW-------------TKIIEDPAECADFHPSG-VVAV---GTAT---  427 (626)
T ss_pred             eeeEEcCCChhheeec-cCcceEEEcc--CCceeE-------------EEEecCceeEeeccCcc-eEEE---eecc---
Confidence            6667777776666654 4444555554  111111             11122378999999999 8888   5544   


Q ss_pred             eEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          360 GLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       360 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      |...|.|.++..++++.-.        .+...++.|.|.   |..||||.-|+.|.+|.+-
T Consensus       428 G~w~V~d~e~~~lv~~~~d--------~~~ls~v~ysp~---G~~lAvgs~d~~iyiy~Vs  477 (626)
T KOG2106|consen  428 GRWFVLDTETQDLVTIHTD--------NEQLSVVRYSPD---GAFLAVGSHDNHIYIYRVS  477 (626)
T ss_pred             ceEEEEecccceeEEEEec--------CCceEEEEEcCC---CCEEEEecCCCeEEEEEEC
Confidence            6699999998777755422        222447889886   9999999999999999864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=8.1e-17  Score=150.78  Aligned_cols=186  Identities=15%  Similarity=0.265  Sum_probs=142.4

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS  173 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~  173 (427)
                      +.+|  .|.++.|++...+|+.|+.+|+|++||+...  .......+|...+.++.|+|-+ .+.|+|+. ..+++||+.
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA--k~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~R  142 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA--KIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIR  142 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhh--hhhhhhhccccCcceeeeccce-EEeccccccccceehhhh
Confidence            3444  8999999999999999999999999999987  5666778999999999999999 66677754 789999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                      +-                         -|.                          ..++.|...+..+.|+|+|++++.
T Consensus       143 k~-------------------------Gc~--------------------------~~~~s~~~vv~~l~lsP~Gr~v~~  171 (825)
T KOG0267|consen  143 KK-------------------------GCS--------------------------HTYKSHTRVVDVLRLSPDGRWVAS  171 (825)
T ss_pred             cc-------------------------Cce--------------------------eeecCCcceeEEEeecCCCceeec
Confidence            10                         111                          123346678889999999999999


Q ss_pred             EecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302          254 AKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       254 ~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      ++.|..++|||...++. ..+..|...+.++.|+|..-.++.|+.+. ++..|++..-...-.+.            ..-
T Consensus       172 g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~-tv~f~dletfe~I~s~~------------~~~  238 (825)
T KOG0267|consen  172 GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDR-TVRFWDLETFEVISSGK------------PET  238 (825)
T ss_pred             cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCc-eeeeeccceeEEeeccC------------Ccc
Confidence            99999999999988887 45668999999999999777666655444 55555444210000000            012


Q ss_pred             CceeEEEECCCCCEEEE
Q 014302          333 QGIEKIAWDASGERLAV  349 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~  349 (427)
                      ..|.+++|+|+++.+++
T Consensus       239 ~~v~~~~fn~~~~~~~~  255 (825)
T KOG0267|consen  239 DGVRSLAFNPDGKIVLS  255 (825)
T ss_pred             CCceeeeecCCceeeec
Confidence            37899999999999877

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.6e-15  Score=134.13  Aligned_cols=191  Identities=18%  Similarity=0.287  Sum_probs=125.6

Q ss_pred             eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccc
Q 014302          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~  182 (427)
                      .+++|+.+|..||+|+.||++|||++...  ........|.+.|.++.|+|||+.+...+.+ ..+||+++ .+......
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~-~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN-TGAALARK  223 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcc--hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec-cCchhhhc
Confidence            68999999999999999999999998877  4444556788999999999999544455555 89999998 22221111


Q ss_pred             c-Ccc---cccccccCCCC-cceeEeehhcccCCCc-eeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          183 S-GAA---SFLGALSRGPG-TRWTLVDFLRSQNGEQ-ITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       183 ~-~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~-v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                      + ...   -....+..++. ..+.+......+.... ...-.|+-+ +.+...+.+. ....|++++.|+||++++.|+.
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIK-RFKSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhh-ccCcceeEEEcCCCcEEEEecc
Confidence            1 100   00001111111 1111111111110111 112334433 3333222332 2457999999999999999999


Q ss_pred             CCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCC
Q 014302          257 DGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGS  299 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~  299 (427)
                      ||.|-|++..+.+...+.  .|...|+.+.|+||.++++..+.+.
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~  346 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN  346 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence            999999999988885554  8999999999999999998754444

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.67  E-value=2.7e-15  Score=140.15  Aligned_cols=226  Identities=17%  Similarity=0.196  Sum_probs=153.6

Q ss_pred             ccccccCCCCCCCCCC--ceeeeEEcCCCCEEEEEeCC-----CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCc
Q 014302           85 IKPLLHPDHVHLLPEV--DLQGVSWHQHKHIVAFISGS-----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR  157 (427)
Q Consensus        85 ~~~~~~p~~~~~l~~~--~V~~l~~sp~g~~lat~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~  157 (427)
                      ++..++|+..++ .+|  .|++++.+|+|++||++...     ..|+||+...-  .......+|.-.|+.++|||||.+
T Consensus       510 q~~tLwPEv~KL-YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W--~~~~~L~~HsLTVT~l~FSpdg~~  586 (764)
T KOG1063|consen  510 QQNTLWPEVHKL-YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW--LQVQELEGHSLTVTRLAFSPDGRY  586 (764)
T ss_pred             HHhccchhhHHh-ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch--hhhheecccceEEEEEEECCCCcE
Confidence            344566665554 555  99999999999999998654     46788876655  444456789999999999999988


Q ss_pred             eEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccC
Q 014302          158 SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFG  237 (427)
Q Consensus       158 ~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~  237 (427)
                      +|+++.|.++.+|....+..                          ..++                  .+   ..+.|..
T Consensus       587 LLsvsRDRt~sl~~~~~~~~--------------------------~e~~------------------fa---~~k~HtR  619 (764)
T KOG1063|consen  587 LLSVSRDRTVSLYEVQEDIK--------------------------DEFR------------------FA---CLKAHTR  619 (764)
T ss_pred             EEEeecCceEEeeeeecccc--------------------------hhhh------------------hc---cccccce
Confidence            88888889999998861100                          0000                  00   1345677


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCC--Ccc---ccccCCCCeeEEEECC----CCCEEEEEEcCCceeeeeeeC
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTW--TSE---PWSSTSGFVTGATWDP----EGRMILLAFAGSLTLGSIHFA  308 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~--~~~---~~~~~~~~v~~v~~sp----dg~~l~~~~~~~~~i~~~~~~  308 (427)
                      -|++..|+|++++++++|.|++|++|.....  +..   ....+...|++++|.|    +...+++.+-+.|.|.+|+..
T Consensus       620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            8999999999999999999999999998776  332   2337889999999987    223355555666688888766


Q ss_pred             CC--CCCccccccccccccceeeccCCceeEEEECCC--------CC--EEEEEEecCCCcceeEEEEEEec
Q 014302          309 SK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS--------GE--RLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       309 ~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~--------g~--~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      ..  ..+...+..+.  .......+...|+.+.|+|.        ..  .|++   +++|   ..++++++.
T Consensus       700 ~~~~~~~~~~~~~~~--~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~---~g~D---~~vri~nv~  763 (764)
T KOG1063|consen  700 REHRQVTVGTFNLDT--RLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAV---GGDD---ESVRIFNVD  763 (764)
T ss_pred             cccccccceeeeecc--ccccccChHHhhheeEeccccccccccccceeEEee---eccc---ceeEEeecc
Confidence            32  11111111111  11112233447899999976        23  4577   5555   569998764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.67  E-value=2.9e-13  Score=125.75  Aligned_cols=260  Identities=12%  Similarity=0.102  Sum_probs=155.7

Q ss_pred             ceeeeEEcCCCCEEEEEe-CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      ....++++|++++|++++ .++.|.+|+++..+................++|+|+++.++++.. ++.+.+|+++.++..
T Consensus        36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~  115 (330)
T PRK11028         36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP  115 (330)
T ss_pred             CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC
Confidence            456789999999887664 578899999973321111111123345678999999955555543 488999998611100


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFD  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d  257 (427)
                      .                     ....                          .+ .+......++++|+|++++ +...+
T Consensus       116 ~---------------------~~~~--------------------------~~-~~~~~~~~~~~~p~g~~l~v~~~~~  147 (330)
T PRK11028        116 V---------------------APIQ--------------------------II-EGLEGCHSANIDPDNRTLWVPCLKE  147 (330)
T ss_pred             C---------------------Ccee--------------------------ec-cCCCcccEeEeCCCCCEEEEeeCCC
Confidence            0                     0000                          00 0112456788999999987 55567


Q ss_pred             CcEEEEEcCCCCccc-------cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeec
Q 014302          258 GTFYLWETNTWTSEP-------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  330 (427)
Q Consensus       258 g~v~iwd~~~~~~~~-------~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (427)
                      +.|.+||+.+.....       ..........++|+|+|++++++...++.+.+|++......+.........+.  ...
T Consensus       148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~--~~~  225 (330)
T PRK11028        148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA--DFS  225 (330)
T ss_pred             CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC--cCC
Confidence            999999997633211       01223446789999999999988776779999988743222110000000000  001


Q ss_pred             cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe-
Q 014302          331 GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW-  409 (427)
Q Consensus       331 ~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~-  409 (427)
                      +......+.++|+|++|+++..  .+   ++|.+|++...... +...+.+.. +  ..+..++|.|+   |..|.|+. 
T Consensus       226 ~~~~~~~i~~~pdg~~lyv~~~--~~---~~I~v~~i~~~~~~-~~~~~~~~~-~--~~p~~~~~~~d---g~~l~va~~  293 (330)
T PRK11028        226 DTRWAADIHITPDGRHLYACDR--TA---SLISVFSVSEDGSV-LSFEGHQPT-E--TQPRGFNIDHS---GKYLIAAGQ  293 (330)
T ss_pred             CCccceeEEECCCCCEEEEecC--CC---CeEEEEEEeCCCCe-EEEeEEEec-c--ccCCceEECCC---CCEEEEEEc
Confidence            1123456899999999999622  22   56999999653211 112222221 1  23557888886   66666655 


Q ss_pred             eCceEEEEecccc
Q 014302          410 SSGFCCTYPLIFR  422 (427)
Q Consensus       410 ~~g~i~~~~~~~~  422 (427)
                      .++.|.+|.+-..
T Consensus       294 ~~~~v~v~~~~~~  306 (330)
T PRK11028        294 KSHHISVYEIDGE  306 (330)
T ss_pred             cCCcEEEEEEcCC
Confidence            4889999987543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=1.1e-14  Score=122.85  Aligned_cols=268  Identities=16%  Similarity=0.240  Sum_probs=167.6

Q ss_pred             ceeeeEEcC--CC-CEEEEEeC----CCeEEEEEccCCCCcce-eeccCCcCCeeEEEEccCCC----ceEEEecCCeEE
Q 014302          101 DLQGVSWHQ--HK-HIVAFISG----STQVIVRDYEDSGKDAC-ILTSDSQRDVKVLEWRPNGG----RSLSVGCKGGIC  168 (427)
Q Consensus       101 ~V~~l~~sp--~g-~~lat~~~----d~~v~vwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~----~~la~g~~~~i~  168 (427)
                      .+.++.|+-  +. .+||.|+.    ...|.|-.++....+.. ...+.|.-+++.+.|.|+..    .+||+++ ..++
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D~LR  124 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-DFLR  124 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-CeEE
Confidence            578889983  33 38999975    46777766665433222 22356889999999999873    3666655 5699


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccC------------------
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLG------------------  229 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~------------------  229 (427)
                      +|.+..+.........                 +...-..+...+++++.|+. |-+++.+.                  
T Consensus       125 lWri~~ee~~~~~~~~-----------------L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~  187 (364)
T KOG0290|consen  125 LWRIGDEESRVELQSV-----------------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT  187 (364)
T ss_pred             EEeccCcCCceehhhh-----------------hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc
Confidence            9999732221111000                 00001112345666777765 33332211                  


Q ss_pred             --ceEEeccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCccccc----cCCCCeeEEEECCCC-CEEEEEEcCCce
Q 014302          230 --TPIRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWS----STSGFVTGATWDPEG-RMILLAFAGSLT  301 (427)
Q Consensus       230 --~~~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~v~~spdg-~~l~~~~~~~~~  301 (427)
                        +.+-.|...|+.++|...+. .+|+.+.||+||++|++..+..+..    ....+...++|++.. +++|+-..+...
T Consensus       188 vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~  267 (364)
T KOG0290|consen  188 VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNK  267 (364)
T ss_pred             eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCce
Confidence              22345889999999999776 4558999999999999988775443    235678899999865 455655555556


Q ss_pred             eeeeeeCCC---CCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCce-EEEe
Q 014302          302 LGSIHFASK---PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPL-ISLS  376 (427)
Q Consensus       302 i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~-~~~~  376 (427)
                      +.++++...   ...+.+|..              .|+.++|.|... .|++   +++|   ..+.+||++.... -...
T Consensus       268 V~iLDiR~P~tpva~L~~H~a--------------~VNgIaWaPhS~~hict---aGDD---~qaliWDl~q~~~~~~~d  327 (364)
T KOG0290|consen  268 VVILDIRVPCTPVARLRNHQA--------------SVNGIAWAPHSSSHICT---AGDD---CQALIWDLQQMPRENGED  327 (364)
T ss_pred             EEEEEecCCCcceehhhcCcc--------------cccceEecCCCCceeee---cCCc---ceEEEEecccccccCCCC
Confidence            777777653   124444444              889999998765 4555   6666   5699999987544 1111


Q ss_pred             eeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeC
Q 014302          377 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS  411 (427)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~  411 (427)
                      |.=-. .++.+  ...++|.+.  ++..+++++..
T Consensus       328 Pilay-~a~~E--VNqi~Ws~~--~~Dwiai~~~k  357 (364)
T KOG0290|consen  328 PILAY-TAGGE--VNQIQWSSS--QPDWIAICFGK  357 (364)
T ss_pred             chhhh-hccce--eeeeeeccc--CCCEEEEEecC
Confidence            21111 12222  447788765  56788888543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=2.1e-14  Score=134.02  Aligned_cols=243  Identities=14%  Similarity=0.195  Sum_probs=163.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++|||+.+.+.||.+-.||.|.+|++...-.....+.-+....|.+++|++.+ +++.++..+.|.-||+.       
T Consensus        27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~-------   98 (691)
T KOG2048|consen   27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLH-------   98 (691)
T ss_pred             ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecc-------
Confidence            7999999999999999999999999999886333333444566789999999666 89999999999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                        ++                +...                          .+....+.|++++.+|.+..++.|++||.+
T Consensus        99 --~l----------------k~~~--------------------------~~d~~gg~IWsiai~p~~~~l~IgcddGvl  134 (691)
T KOG2048|consen   99 --TL----------------KQKY--------------------------NIDSNGGAIWSIAINPENTILAIGCDDGVL  134 (691)
T ss_pred             --cC----------------ceeE--------------------------EecCCCcceeEEEeCCccceEEeecCCceE
Confidence              11                1111                          112235689999999999999999999977


Q ss_pred             EEEEcCCCCcc---ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc-cccceeeccCCcee
Q 014302          261 YLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD-LPDIVSLTGSQGIE  336 (427)
Q Consensus       261 ~iwd~~~~~~~---~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~  336 (427)
                      ..++...++..   .+.-.++.+.+++|+|++..++.|+.++ .|++|+....... .-+.+.++ +.+    ....-|+
T Consensus       135 ~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg-~Iriwd~~~~~t~-~~~~~~~d~l~k----~~~~iVW  208 (691)
T KOG2048|consen  135 YDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG-VIRIWDVKSGQTL-HIITMQLDRLSK----REPTIVW  208 (691)
T ss_pred             EEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc-eEEEEEcCCCceE-EEeeeccccccc----CCceEEE
Confidence            77777666542   1224568999999999999998775554 6777766654211 11111010 000    0111477


Q ss_pred             EEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEE
Q 014302          337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT  416 (427)
Q Consensus       337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~  416 (427)
                      +|.|-.++ .||+   |...   |+|.+||...+.+++...       .....++|++-.++   +.-+-++..|++|..
T Consensus       209 Sv~~Lrd~-tI~s---gDS~---G~V~FWd~~~gTLiqS~~-------~h~adVl~Lav~~~---~d~vfsaGvd~~ii~  271 (691)
T KOG2048|consen  209 SVLFLRDS-TIAS---GDSA---GTVTFWDSIFGTLIQSHS-------CHDADVLALAVADN---EDRVFSAGVDPKIIQ  271 (691)
T ss_pred             EEEEeecC-cEEE---ecCC---ceEEEEcccCcchhhhhh-------hhhcceeEEEEcCC---CCeEEEccCCCceEE
Confidence            88777666 4555   3333   889999998887653321       12223556666554   333444447777766


Q ss_pred             Ee
Q 014302          417 YP  418 (427)
Q Consensus       417 ~~  418 (427)
                      |.
T Consensus       272 ~~  273 (691)
T KOG2048|consen  272 YS  273 (691)
T ss_pred             EE
Confidence            64

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.67  E-value=7.8e-15  Score=123.93  Aligned_cols=158  Identities=15%  Similarity=0.266  Sum_probs=122.5

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCC--CceEEEecC-CeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG--GRSLSVGCK-GGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~--~~~la~g~~-~~i~iw~~~~~~  176 (427)
                      .|.++.|=|-.. .+.+++.|.+++|||.++.   .....+...+.|++-+|||-.  ..++|+|.+ -.|++-|+.   
T Consensus       103 ~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl---Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~---  176 (397)
T KOG4283|consen  103 AISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL---QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA---  176 (397)
T ss_pred             eeeeeEEeeecCceeecccccceEEEeecccc---eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEecc---
Confidence            899999999665 7778899999999999887   334445667789999999854  247888876 678999987   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEe
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAK  255 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~  255 (427)
                            .|                .                          ....+.+|.++|.++.|+|...+++ +|+
T Consensus       177 ------SG----------------s--------------------------~sH~LsGHr~~vlaV~Wsp~~e~vLatgs  208 (397)
T KOG4283|consen  177 ------SG----------------S--------------------------FSHTLSGHRDGVLAVEWSPSSEWVLATGS  208 (397)
T ss_pred             ------CC----------------c--------------------------ceeeeccccCceEEEEeccCceeEEEecC
Confidence                  22                0                          1124667889999999999999877 999


Q ss_pred             cCCcEEEEEcCCCC-c---------------cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302          256 FDGTFYLWETNTWT-S---------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  313 (427)
Q Consensus       256 ~dg~v~iwd~~~~~-~---------------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~  313 (427)
                      .||.|++||++.-. +               ..-..|.+.+..++|+.||.++++.+.++ .++.|+..+...+
T Consensus       209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-RIRVWNMESGRNT  281 (397)
T ss_pred             CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc-ceEEeecccCccc
Confidence            99999999998541 1               11227889999999999999999876666 7778877765443

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.66  E-value=2e-14  Score=122.66  Aligned_cols=193  Identities=19%  Similarity=0.240  Sum_probs=140.4

Q ss_pred             ceeeeEEcCCCC--EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~--~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|+++.|.++-.  .|++|+.||.|.+|+...-  .......+|.+.|+.++.+|.++..|++|.|+.+++|++-     
T Consensus        85 sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W--~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV-----  157 (362)
T KOG0294|consen   85 SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW--ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV-----  157 (362)
T ss_pred             ceEEEEecCCcchhheeeecCCCcEEEEEcCCe--EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh-----
Confidence            899999999876  9999999999999997765  6667777899999999999999878999999999999986     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                          .|              ..-.+                            .+ .....+.+.|+|.|.+++.+. ..
T Consensus       158 ----~G--------------r~a~v----------------------------~~-L~~~at~v~w~~~Gd~F~v~~-~~  189 (362)
T KOG0294|consen  158 ----RG--------------RVAFV----------------------------LN-LKNKATLVSWSPQGDHFVVSG-RN  189 (362)
T ss_pred             ----cC--------------cccee----------------------------ec-cCCcceeeEEcCCCCEEEEEe-cc
Confidence                11              00000                            00 111234488999999988777 45


Q ss_pred             cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCcee
Q 014302          259 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIE  336 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~  336 (427)
                      .|-+|.+.+-...........+.++.|-. +..|++|..+. .+..++-.+..+  .+.+|..              +|-
T Consensus       190 ~i~i~q~d~A~v~~~i~~~~r~l~~~~l~-~~~L~vG~d~~-~i~~~D~ds~~~~~~~~AH~~--------------RVK  253 (362)
T KOG0294|consen  190 KIDIYQLDNASVFREIENPKRILCATFLD-GSELLVGGDNE-WISLKDTDSDTPLTEFLAHEN--------------RVK  253 (362)
T ss_pred             EEEEEecccHhHhhhhhccccceeeeecC-CceEEEecCCc-eEEEeccCCCccceeeecchh--------------hee
Confidence            68899887766544444445667777754 66777765554 666666665322  3334443              778


Q ss_pred             EEEE--CCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          337 KIAW--DASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       337 ~v~~--sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      ++.+  .|++.+|++   .+.|   |.|+|||+...
T Consensus       254 ~i~~~~~~~~~~lvT---aSSD---G~I~vWd~~~~  283 (362)
T KOG0294|consen  254 DIASYTNPEHEYLVT---ASSD---GFIKVWDIDME  283 (362)
T ss_pred             eeEEEecCCceEEEE---eccC---ceEEEEEcccc
Confidence            8773  488889988   5666   77999999775

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.65  E-value=5.9e-15  Score=125.85  Aligned_cols=204  Identities=14%  Similarity=0.241  Sum_probs=150.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--------------------------------------CCcceeeccCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------------------------------------GKDACILTSDS  142 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--------------------------------------~~~~~~~~~~~  142 (427)
                      .|+++.|++.+.++++++.|++..||.....                                      ...+.....+|
T Consensus       192 SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH  271 (481)
T KOG0300|consen  192 SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH  271 (481)
T ss_pred             ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc
Confidence            8999999999999999999999999973110                                      01122334568


Q ss_pred             cCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC
Q 014302          143 QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD  222 (427)
Q Consensus       143 ~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  222 (427)
                      ...|.+..|-..|++++..+.|.+..+||++         ++                ..+.                  
T Consensus       272 ~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE---------tg----------------e~v~------------------  308 (481)
T KOG0300|consen  272 RAVVSACDWLAGGQQMVTASWDRTANLWDVE---------TG----------------EVVN------------------  308 (481)
T ss_pred             ccceEehhhhcCcceeeeeeccccceeeeec---------cC----------------ceec------------------
Confidence            8899999999888777777777999999998         22                2233                  


Q ss_pred             CCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          223 GRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       223 g~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                              .+.+|....+.++-+|..+++++++.|-+.++||.+..-.  ..+.+|...|+++.|..|.+. + .++++.
T Consensus       309 --------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~v-V-SgSDDr  378 (481)
T KOG0300|consen  309 --------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRV-V-SGSDDR  378 (481)
T ss_pred             --------cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCce-e-ecCCCc
Confidence                    2334566677778889999999999999999999984332  345599999999999987654 3 457777


Q ss_pred             eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          301 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      ++++|++.+....+..            +....+++.++.+..+..+|.   -.+.   ..|++||++...+..+
T Consensus       379 TvKvWdLrNMRsplAT------------IRtdS~~NRvavs~g~~iIAi---PhDN---RqvRlfDlnG~RlaRl  435 (481)
T KOG0300|consen  379 TVKVWDLRNMRSPLAT------------IRTDSPANRVAVSKGHPIIAI---PHDN---RQVRLFDLNGNRLARL  435 (481)
T ss_pred             eEEEeeeccccCccee------------eecCCccceeEeecCCceEEe---ccCC---ceEEEEecCCCccccC
Confidence            9999999886432211            112237888999988888887   3333   4599999987665433

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.65  E-value=1.5e-14  Score=139.31  Aligned_cols=227  Identities=16%  Similarity=0.167  Sum_probs=164.2

Q ss_pred             CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee-ccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  176 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~  176 (427)
                      .+.+.+..|+  +.++++++.|.++++|+....  ..... ..+|.+.|.++++.. +..+|.+|+ |.++++||+.   
T Consensus       208 ~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~--~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~---  279 (537)
T KOG0274|consen  208 DHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNG--YLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCS---  279 (537)
T ss_pred             cchhhhheee--cCeEEecCCCceeEEeecccc--eEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecC---
Confidence            4478889998  668889999999999998877  44444 678999999999987 446666665 7999999987   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                            ++                .+...+.                          +|...+.++..  ....+++|+.
T Consensus       280 ------sg----------------~C~~~l~--------------------------gh~stv~~~~~--~~~~~~sgs~  309 (537)
T KOG0274|consen  280 ------TG----------------ECTHSLQ--------------------------GHTSSVRCLTI--DPFLLVSGSR  309 (537)
T ss_pred             ------CC----------------cEEEEec--------------------------CCCceEEEEEc--cCceEeeccC
Confidence                  22                3444333                          34455555554  3446778999


Q ss_pred             CCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC--CCccccccccccccceeeccCC
Q 014302          257 DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP--PSLDAHLLPVDLPDIVSLTGSQ  333 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  333 (427)
                      |.+|++|++.++.+.... +|...|.++..+  +.++++++.++ .+.+|++...+  ..+.+|..              
T Consensus       310 D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~-~v~VW~~~~~~cl~sl~gH~~--------------  372 (537)
T KOG0274|consen  310 DNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDG-TVKVWDPRTGKCLKSLSGHTG--------------  372 (537)
T ss_pred             CceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCc-eEEEEEhhhceeeeeecCCcc--------------
Confidence            999999999999886666 599999999998  77887765555 88888887532  24445544              


Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC-ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g  412 (427)
                      .|.++.+.+. ..+++   |+-|   ++|++||+.+. .++.     .+.+.....  ..+.+     .+..|.-+..||
T Consensus       373 ~V~sl~~~~~-~~~~S---gs~D---~~IkvWdl~~~~~c~~-----tl~~h~~~v--~~l~~-----~~~~Lvs~~aD~  433 (537)
T KOG0274|consen  373 RVYSLIVDSE-NRLLS---GSLD---TTIKVWDLRTKRKCIH-----TLQGHTSLV--SSLLL-----RDNFLVSSSADG  433 (537)
T ss_pred             eEEEEEecCc-ceEEe---eeec---cceEeecCCchhhhhh-----hhcCCcccc--ccccc-----ccceeEeccccc
Confidence            8899988775 77767   6766   67999999988 5541     122222221  12222     255788888999


Q ss_pred             eEEEEec
Q 014302          413 FCCTYPL  419 (427)
Q Consensus       413 ~i~~~~~  419 (427)
                      .|.+|++
T Consensus       434 ~Ik~WD~  440 (537)
T KOG0274|consen  434 TIKLWDA  440 (537)
T ss_pred             cEEEeec
Confidence            9999974

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=4.6e-14  Score=120.69  Aligned_cols=215  Identities=16%  Similarity=0.251  Sum_probs=155.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC-CcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      +|+|.+|++|++.+|++-.+..|.||...... .+.......|...|+.+.|+|.+++++.++.|..-.+|....     
T Consensus        12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~-----   86 (361)
T KOG1523|consen   12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS-----   86 (361)
T ss_pred             ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC-----
Confidence            68999999999999999999999999988774 566677778999999999999998888888888889998730     


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                                       +..|++.-                          ++..+....+++.|+|.++.+|+|+....
T Consensus        87 -----------------~~~Wkptl--------------------------vLlRiNrAAt~V~WsP~enkFAVgSgar~  123 (361)
T KOG1523|consen   87 -----------------GGTWKPTL--------------------------VLLRINRAATCVKWSPKENKFAVGSGARL  123 (361)
T ss_pred             -----------------CCeeccce--------------------------eEEEeccceeeEeecCcCceEEeccCccE
Confidence                             11222222                          34456778999999999999999999999


Q ss_pred             EEEEEcCCCCc-----cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC-----CC-CCcccccccccccccee
Q 014302          260 FYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS-----KP-PSLDAHLLPVDLPDIVS  328 (427)
Q Consensus       260 v~iwd~~~~~~-----~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~-----~~-~~~~~~~~~~~~~~~~~  328 (427)
                      |-||=.+....     .....+...|.++.|+|++-.|+.|+.+. ..+++..+-     ++ +.-.+..+|.-.-....
T Consensus       124 isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~-k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~  202 (361)
T KOG1523|consen  124 ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG-KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA  202 (361)
T ss_pred             EEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc-ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence            99987765442     12236778899999999988887665444 555554332     21 11122222221000111


Q ss_pred             eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      -..++.|..+.|+|+|..||-   .+.|   ++|.+-|....
T Consensus       203 ~~~ggwvh~v~fs~sG~~law---v~Hd---s~v~~~da~~p  238 (361)
T KOG1523|consen  203 SSSGGWVHGVLFSPSGNRLAW---VGHD---STVSFVDAAGP  238 (361)
T ss_pred             ccCCCceeeeEeCCCCCEeeE---ecCC---CceEEeecCCC
Confidence            145668999999999999998   4444   56888887554

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.65  E-value=1.9e-15  Score=136.17  Aligned_cols=193  Identities=11%  Similarity=0.133  Sum_probs=149.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      ..++++.+||.+..+++..||.|.|||+...  ..+....+|.+.+.||..++||.++-..|-|++|+.||+.       
T Consensus       511 aCyALa~spDakvcFsccsdGnI~vwDLhnq--~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr-------  581 (705)
T KOG0639|consen  511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR-------  581 (705)
T ss_pred             hhhhhhcCCccceeeeeccCCcEEEEEcccc--eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhh-------
Confidence            5677899999999999999999999999887  5666778999999999999999777777788999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                        .+                  .+ +..|                        .....|.++..+|++.+|++|-.++.|
T Consensus       582 --eg------------------rq-lqqh------------------------dF~SQIfSLg~cP~~dWlavGMens~v  616 (705)
T KOG0639|consen  582 --EG------------------RQ-LQQH------------------------DFSSQIFSLGYCPTGDWLAVGMENSNV  616 (705)
T ss_pred             --hh------------------hh-hhhh------------------------hhhhhheecccCCCccceeeecccCcE
Confidence              11                  11 1111                        023467888899999999999999999


Q ss_pred             EEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEE
Q 014302          261 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW  340 (427)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  340 (427)
                      .|......+...+..|...|.++.|++.|+++++++.++ .+..|+..-...             +........|.++..
T Consensus       617 evlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDn-lLnawrtPyGas-------------iFqskE~SsVlsCDI  682 (705)
T KOG0639|consen  617 EVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDN-LLNAWRTPYGAS-------------IFQSKESSSVLSCDI  682 (705)
T ss_pred             EEEecCCccceeecccccEEEEEEecccCceeeecCchh-hhhhccCccccc-------------eeeccccCcceeeee
Confidence            998887777777778999999999999999999876555 444443332211             111223348899999


Q ss_pred             CCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          341 DASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       341 sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      |-|.+|+++   |+.|   +...||.+
T Consensus       683 S~ddkyIVT---GSGd---kkATVYeV  703 (705)
T KOG0639|consen  683 SFDDKYIVT---GSGD---KKATVYEV  703 (705)
T ss_pred             ccCceEEEe---cCCC---cceEEEEE
Confidence            999999988   7777   44667764

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.65  E-value=8.5e-15  Score=139.51  Aligned_cols=197  Identities=15%  Similarity=0.144  Sum_probs=150.8

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec---cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      ..+++++.++.|++.+.|+..|+|-+|+++.+  .....+   ..|.+.|++++....+..+++++.+|-+++|+..   
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG--i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~---  523 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSG--IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK---  523 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccC--eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecC---
Confidence            37899999999999999999999999999988  222222   3699999999998777556666677999999997   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                            ..                .....++                           ....+..+..+.....++.+..
T Consensus       524 ------~k----------------~l~~~l~---------------------------l~~~~~~iv~hr~s~l~a~~~d  554 (910)
T KOG1539|consen  524 ------KK----------------VLKKSLR---------------------------LGSSITGIVYHRVSDLLAIALD  554 (910)
T ss_pred             ------Cc----------------ceeeeec---------------------------cCCCcceeeeeehhhhhhhhcC
Confidence                  00                1111111                           1235666777778888889999


Q ss_pred             CCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302          257 DGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       257 dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                      |-.|+++|+.+.+. ..+.+|...|++++|||||++|++++.+. +|+.|++..... ++            .+....+.
T Consensus       555 df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-tIr~wDlpt~~l-ID------------~~~vd~~~  620 (910)
T KOG1539|consen  555 DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-TIRTWDLPTGTL-ID------------GLLVDSPC  620 (910)
T ss_pred             ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-cEEEEeccCcce-ee------------eEecCCcc
Confidence            99999999998887 45669999999999999999999876544 888888877521 11            11223378


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      .++.|||+|.+||++..+...     |++|--++
T Consensus       621 ~sls~SPngD~LAT~Hvd~~g-----IylWsNks  649 (910)
T KOG1539|consen  621 TSLSFSPNGDFLATVHVDQNG-----IYLWSNKS  649 (910)
T ss_pred             eeeEECCCCCEEEEEEecCce-----EEEEEchh
Confidence            999999999999998777665     99997543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.64  E-value=5e-15  Score=134.50  Aligned_cols=182  Identities=21%  Similarity=0.329  Sum_probs=135.2

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCccccccc
Q 014302          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA  191 (427)
Q Consensus       112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~  191 (427)
                      ..++.++.||.+.|-  +..++ .......|.+.+.+-.|+|||.-+|.+|.||.|++|.-.          |       
T Consensus        76 d~~~i~s~DGkf~il--~k~~r-VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----------G-------  135 (737)
T KOG1524|consen   76 DTLLICSNDGRFVIL--NKSAR-VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS----------G-------  135 (737)
T ss_pred             ceEEEEcCCceEEEe--cccch-hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc----------c-------
Confidence            378888899999884  43322 334556799999999999999889999999999999864          1       


Q ss_pred             ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc--------------cCc--eEEeccCCeEEEEEccCCCEEEEEe
Q 014302          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG--------------LGT--PIRRGFGGLSILKWSPTGDYFFAAK  255 (427)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~--------------~~~--~~~~~~~~v~~~~~sp~g~~l~~~~  255 (427)
                                .++..-.....+|.|++|.|+.+-+.              ...  ..+.|.+-|.++.|++.+..+++|+
T Consensus       136 ----------MLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG  205 (737)
T KOG1524|consen  136 ----------MLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG  205 (737)
T ss_pred             ----------hHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC
Confidence                      11111122477899999999876421              111  2456899999999999999999999


Q ss_pred             cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302          256 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                      +|-..+|||-..........|..+|++++|.|+ +.++.++ ..    ..++...                    .-+.|
T Consensus       206 ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S-~n----t~R~~~p--------------------~~GSi  259 (737)
T KOG1524|consen  206 EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWS-YN----TARFSSP--------------------RVGSI  259 (737)
T ss_pred             CceeEEeecccCcccccCChhccceeeeeeccc-cceeeee-ee----eeeecCC--------------------Cccce
Confidence            999999999765555555589999999999999 4444443 22    2222221                    12488


Q ss_pred             eEEEECCCCCEEEE
Q 014302          336 EKIAWDASGERLAV  349 (427)
Q Consensus       336 ~~v~~sp~g~~La~  349 (427)
                      ..++||+||..+++
T Consensus       260 fnlsWS~DGTQ~a~  273 (737)
T KOG1524|consen  260 FNLSWSADGTQATC  273 (737)
T ss_pred             EEEEEcCCCceeec
Confidence            99999999999998

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.64  E-value=2.1e-14  Score=119.52  Aligned_cols=283  Identities=15%  Similarity=0.127  Sum_probs=169.2

Q ss_pred             CCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302           96 LLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus        96 ~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      .|+.|  .|+++.|..+++ |.+|..-|.|++|++.+... ...+.-.+...|+.+.--|++ .+..-|.+..+.+|++.
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~-~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERD-LPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTIA   85 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCcc-chhhhhhccceeeceeecCCc-chhhcCCCceEEEEEcc
Confidence            34444  789999988775 78899999999999998722 222332467789999988986 78888889999999997


Q ss_pred             CCCCccccccC--cccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC-C----cccCc---------eEEeccC
Q 014302          174 YPGNAASVRSG--AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-F----PGLGT---------PIRRGFG  237 (427)
Q Consensus       174 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~----l~~~~---------~~~~~~~  237 (427)
                      ... -...+.-  ..-.+..++--.+             ......+.+.|+.. .    ...+.         .-....+
T Consensus        86 ~s~-~i~i~Si~~nslgFCrfSl~~~-------------~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg  151 (323)
T KOG0322|consen   86 YSA-FISIHSIVVNSLGFCRFSLVKK-------------PKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG  151 (323)
T ss_pred             Ccc-eEEEeeeeccccccccceeccC-------------CCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence            311 0000000  0000000000000             00001111111100 0    00000         0111235


Q ss_pred             CeEEEEEcc-CCCE--EEEEecCCcEEEEEcCCCCc-----------cccccCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302          238 GLSILKWSP-TGDY--FFAAKFDGTFYLWETNTWTS-----------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  303 (427)
Q Consensus       238 ~v~~~~~sp-~g~~--l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~  303 (427)
                      .+.+..|.. ++.+  |++|-++|.|.+||+.++..           .....|..+|.++.+.+.-..=+.++-++ .+.
T Consensus       152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d-kl~  230 (323)
T KOG0322|consen  152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD-KLV  230 (323)
T ss_pred             ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc-cce
Confidence            566666543 4443  34888999999999988632           12237899999999986443333443333 455


Q ss_pred             eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeC
Q 014302          304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG  383 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~  383 (427)
                      .|.+......+       .+.....+.+. .|..+..-||++.||+   ++.|   +.|+||..++...+.+.     .-
T Consensus       231 ~~Sl~~s~gsl-------q~~~e~~lknp-Gv~gvrIRpD~KIlAT---AGWD---~RiRVyswrtl~pLAVL-----ky  291 (323)
T KOG0322|consen  231 MYSLNHSTGSL-------QIRKEITLKNP-GVSGVRIRPDGKILAT---AGWD---HRIRVYSWRTLNPLAVL-----KY  291 (323)
T ss_pred             eeeeccccCcc-------cccceEEecCC-CccceEEccCCcEEee---cccC---CcEEEEEeccCCchhhh-----hh
Confidence            55554432111       11111112222 6888999999999999   7777   66999999887655322     11


Q ss_pred             CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          384 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       384 ~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                        ......+++|+|+   -.++|.+..|++|.+|.+|
T Consensus       292 --Hsagvn~vAfspd---~~lmAaaskD~rISLWkLY  323 (323)
T KOG0322|consen  292 --HSAGVNAVAFSPD---CELMAAASKDARISLWKLY  323 (323)
T ss_pred             --hhcceeEEEeCCC---CchhhhccCCceEEeeecC
Confidence              2234679999997   4689999999999999998

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.64  E-value=2.6e-15  Score=130.14  Aligned_cols=196  Identities=13%  Similarity=0.199  Sum_probs=129.6

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCccc
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~~  180 (427)
                      +..+.-+..+..+||++.+  |.|||....  .+.....--...|.++.|+|-...+|+++ +|++|.|||+.       
T Consensus       150 ~~gIdh~~~~~~FaTcGe~--i~IWD~~R~--~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R-------  218 (433)
T KOG0268|consen  150 YLGIDHHRKNSVFATCGEQ--IDIWDEQRD--NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLR-------  218 (433)
T ss_pred             ccccccccccccccccCce--eeecccccC--CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecc-------
Confidence            3334333334444444332  444554433  22222223345788999999888888887 77999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                        .                           ..++..+.                ..-....++|+|.+-.++++++|..+
T Consensus       219 --~---------------------------~~Pl~KVi----------------~~mRTN~IswnPeafnF~~a~ED~nl  253 (433)
T KOG0268|consen  219 --Q---------------------------ASPLKKVI----------------LTMRTNTICWNPEAFNFVAANEDHNL  253 (433)
T ss_pred             --c---------------------------CCccceee----------------eeccccceecCccccceeeccccccc
Confidence              1                           11111100                01234578899976677799999999


Q ss_pred             EEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          261 YLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       261 ~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      +.||++....  ....+|.+.|.++.|||-|+-+++|+ -+.+|+++........---|..           --+.|.+|
T Consensus       254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs-yDksIRIf~~~~~~SRdiYhtk-----------RMq~V~~V  321 (433)
T KOG0268|consen  254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS-YDKSIRIFPVNHGHSRDIYHTK-----------RMQHVFCV  321 (433)
T ss_pred             eehhhhhhcccchhhcccceeEEEeccCCCcchhcccc-ccceEEEeecCCCcchhhhhHh-----------hhheeeEE
Confidence            9999998765  34448999999999999999999775 4547877777664211000111           11378999


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      .||-|.+|+++   |++|   +.|++|.....+
T Consensus       322 k~S~Dskyi~S---GSdd---~nvRlWka~Ase  348 (433)
T KOG0268|consen  322 KYSMDSKYIIS---GSDD---GNVRLWKAKASE  348 (433)
T ss_pred             EEeccccEEEe---cCCC---cceeeeecchhh
Confidence            99999999988   8888   559999986544

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3.6e-14  Score=121.03  Aligned_cols=200  Identities=22%  Similarity=0.299  Sum_probs=139.8

Q ss_pred             eeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC
Q 014302          146 VKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR  224 (427)
Q Consensus       146 v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  224 (427)
                      ..|+.|++.| .+||+|+. |.+.|||+.         +.                .                       
T Consensus        26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~---------T~----------------~-----------------------   56 (405)
T KOG1273|consen   26 AECCQFSRWG-DYLAVGCANGRVVIYDFD---------TF----------------R-----------------------   56 (405)
T ss_pred             cceEEeccCc-ceeeeeccCCcEEEEEcc---------cc----------------c-----------------------
Confidence            7899999999 89999976 889999997         11                0                       


Q ss_pred             CcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          225 FPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       225 ~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                         .+..+..|..+|.+++||+||+.|++++.|..|.+||+..+.+....-..++|..+.|+|-.+..+.++--...-.+
T Consensus        57 ---iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~v  133 (405)
T KOG1273|consen   57 ---IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVV  133 (405)
T ss_pred             ---hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEE
Confidence               12245567889999999999999999999999999999999987766788999999999976655555433333455


Q ss_pred             eeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP  384 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~  384 (427)
                      +.+.+....+    .|.+-+.  .+  ........|++.|+++.+   |...   |.+.++|..+.+++...-...+   
T Consensus       134 i~~s~~~h~~----Lp~d~d~--dl--n~sas~~~fdr~g~yIit---GtsK---Gkllv~~a~t~e~vas~rits~---  196 (405)
T KOG1273|consen  134 IDFSDPKHSV----LPKDDDG--DL--NSSASHGVFDRRGKYIIT---GTSK---GKLLVYDAETLECVASFRITSV---  196 (405)
T ss_pred             EEecCCceee----ccCCCcc--cc--ccccccccccCCCCEEEE---ecCc---ceEEEEecchheeeeeeeechh---
Confidence            6666532111    1110000  00  002233479999999988   7776   8899999999887744322211   


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                       ...+.+-+++     .|..|++-++|-.|..|++-
T Consensus       197 -~~IK~I~~s~-----~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  197 -QAIKQIIVSR-----KGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             -eeeeEEEEec-----cCcEEEEecCCceEEEEehh
Confidence             1222222322     37789999999999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.9e-14  Score=118.60  Aligned_cols=186  Identities=17%  Similarity=0.299  Sum_probs=133.5

Q ss_pred             CCCC--ceeeeEEcC--CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC-ceEEEe-cCCeEEEE
Q 014302           97 LPEV--DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVG-CKGGICIW  170 (427)
Q Consensus        97 l~~~--~V~~l~~sp--~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~la~g-~~~~i~iw  170 (427)
                      |.+|  +|..++|..  .|.+||+++.||.|.||.-..+..........|...|++++|.|.+. .+|+++ +||.|.|.
T Consensus        52 L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl  131 (299)
T KOG1332|consen   52 LTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVL  131 (299)
T ss_pred             ecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEE
Confidence            3555  899999955  78999999999999999988775555555667999999999999753 356665 56999999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC---CCC-----------cccC-------
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD---GRF-----------PGLG-------  229 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd---g~~-----------l~~~-------  229 (427)
                      +.+..+                      .+........| ...|++++|.|-   |..           ++++       
T Consensus       132 ~~~~~g----------------------~w~t~ki~~aH-~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~Vk  188 (299)
T KOG1332|consen  132 TYDSSG----------------------GWTTSKIVFAH-EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVK  188 (299)
T ss_pred             EEcCCC----------------------Cccchhhhhcc-ccccceeeecCcCCCccccccCcccccceeeccCCcccee
Confidence            887221                      12222223333 677888888885   433           2221       


Q ss_pred             ------------ceEEeccCCeEEEEEccCC----CEEEEEecCCcEEEEEcCCCCc----cccccCCCCeeEEEECCCC
Q 014302          230 ------------TPIRRGFGGLSILKWSPTG----DYFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEG  289 (427)
Q Consensus       230 ------------~~~~~~~~~v~~~~~sp~g----~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~v~~spdg  289 (427)
                                  ..+..|.+-|+.++|.|.-    .+||++++||+|.||..+....    ..+......+..+.||..|
T Consensus       189 iW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG  268 (299)
T KOG1332|consen  189 IWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG  268 (299)
T ss_pred             eeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccc
Confidence                        1256688999999999965    3789999999999998762211    1222556779999999999


Q ss_pred             CEEEEEEcCCceeeeee
Q 014302          290 RMILLAFAGSLTLGSIH  306 (427)
Q Consensus       290 ~~l~~~~~~~~~i~~~~  306 (427)
                      +.|++++.+. .+.+|.
T Consensus       269 n~LaVs~GdN-kvtlwk  284 (299)
T KOG1332|consen  269 NILAVSGGDN-KVTLWK  284 (299)
T ss_pred             cEEEEecCCc-EEEEEE
Confidence            9999876555 555443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.63  E-value=6e-14  Score=120.43  Aligned_cols=71  Identities=14%  Similarity=0.285  Sum_probs=54.5

Q ss_pred             ceeeeEEcCCCCEEE-EEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~la-t~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~  173 (427)
                      .|.-+.|.-|..+++ ....++.|++|++.....  ......-..++.+++|||||..+|.++. +-.|.+|.+.
T Consensus        50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~  122 (447)
T KOG4497|consen   50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLN  122 (447)
T ss_pred             HhhheeeeccceeeeeeeeccceEEEEEeeccee--EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEec
Confidence            677889999888655 457788999999988733  3333455678999999999977766654 4778899987

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.63  E-value=1.6e-14  Score=134.19  Aligned_cols=193  Identities=16%  Similarity=0.129  Sum_probs=145.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEE-ccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW-RPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~-sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      .|+.+...-+|+.|++++.|-+|++|+......-.......|.+.|.|++. .++. .++|+|+ |+.|.+||++..-. 
T Consensus        75 WVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~-  152 (735)
T KOG0308|consen   75 WVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTA-  152 (735)
T ss_pred             HHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCc-eeEEecCCCccEEEEEccCcch-
Confidence            788889999999999999999999999887743344555679999999999 6666 6666665 58999999982111 


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~  241 (427)
                      ..+.+.              +......+.......|++++-++.|..+..|.                 .+++|...|..
T Consensus       153 ~l~~s~--------------n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~  218 (735)
T KOG0308|consen  153 TLVASF--------------NNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV  218 (735)
T ss_pred             hhhhhc--------------cccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence            000000              00111222212377888888888887655442                 26679999999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      +..++||..+++++.||+|++||+...+| ..+..|+..|.++.-+|+=.++++|+. ++.|+.-++.+.
T Consensus       219 ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r-d~~i~~Tdl~n~  287 (735)
T KOG0308|consen  219 LLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR-DGNIYRTDLRNP  287 (735)
T ss_pred             EEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC-CCcEEecccCCc
Confidence            99999999999999999999999998888 455689989999999998888887654 447777777763

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.62  E-value=2.7e-13  Score=115.15  Aligned_cols=204  Identities=13%  Similarity=0.101  Sum_probs=139.7

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC-ceEEEecC-CeEEEEeccCCCC
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCK-GGICIWAPSYPGN  177 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~la~g~~-~~i~iw~~~~~~~  177 (427)
                      .+|.+++|+.||..+++|+.|+.+++||+.++   .......|.++|..+.|-+... ..|++|+. ++++.||..    
T Consensus        73 ~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~---Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R----  145 (347)
T KOG0647|consen   73 GPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG---QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR----  145 (347)
T ss_pred             CCeEEEEEccCCceEEeeccCCceEEEEccCC---CeeeeeecccceeEEEEecCCCcceeEecccccceeecccC----
Confidence            38999999999999999999999999999988   4455567999999999987652 37777764 999999997    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                                           ...++..+.                           ....++++..  -...++++..+
T Consensus       146 ---------------------~~~pv~t~~---------------------------LPeRvYa~Dv--~~pm~vVata~  175 (347)
T KOG0647|consen  146 ---------------------SSNPVATLQ---------------------------LPERVYAADV--LYPMAVVATAE  175 (347)
T ss_pred             ---------------------CCCeeeeee---------------------------ccceeeehhc--cCceeEEEecC
Confidence                                 101111111                           0123444432  23467788899


Q ss_pred             CcEEEEEcCCCCcccc---ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CC--Cccccccccccccceeec
Q 014302          258 GTFYLWETNTWTSEPW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PP--SLDAHLLPVDLPDIVSLT  330 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~  330 (427)
                      +.|.+|+++....+..   ...+..+.+++..+|....+.|+-++ .+.+-.+...  ..  +++.|........     
T Consensus       176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-rv~iq~id~~~~~~nFtFkCHR~~~~~~~-----  249 (347)
T KOG0647|consen  176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG-RVAIQYIDDPNPKDNFTFKCHRSTNSVND-----  249 (347)
T ss_pred             CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc-eEEEEecCCCCccCceeEEEeccCCCCCC-----
Confidence            9999999987654221   14566788998888888777776555 4444455443  11  3344432110000     


Q ss_pred             cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          331 GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       331 ~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      .--.|++++|+|.-..|++   .+.|   |+..+||-.....
T Consensus       250 ~VYaVNsi~FhP~hgtlvT---aGsD---Gtf~FWDkdar~k  285 (347)
T KOG0647|consen  250 DVYAVNSIAFHPVHGTLVT---AGSD---GTFSFWDKDARTK  285 (347)
T ss_pred             ceEEecceEeecccceEEE---ecCC---ceEEEecchhhhh
Confidence            0116899999999889988   4555   8899999865443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.1e-13  Score=129.16  Aligned_cols=211  Identities=18%  Similarity=0.365  Sum_probs=148.2

Q ss_pred             CcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC
Q 014302          142 SQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (427)
Q Consensus       142 ~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (427)
                      ....|.++|++.++ +.||++. ++.|.||++.                        ..|.+...+.++           
T Consensus        24 ~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~------------------------~~w~~~~vi~g~-----------   67 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLS------------------------NNWFLEPVIHGP-----------   67 (691)
T ss_pred             eccceEEEEEeccC-CceeeeccCCcEEEEccC------------------------CCceeeEEEecC-----------
Confidence            45689999999988 5677775 4999999997                        134444444433           


Q ss_pred             CCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCC
Q 014302          221 PDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGS  299 (427)
Q Consensus       221 pdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~  299 (427)
                                    ....|.+++|+ ++..|++.+.+|.|.-||+.+.+.. ......+.|.+++.+|.+..++.++.++
T Consensus        68 --------------~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddG  132 (691)
T KOG2048|consen   68 --------------EDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDG  132 (691)
T ss_pred             --------------CCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCc
Confidence                          23467778888 5557888888999999999998874 4447788999999999999999886555


Q ss_pred             ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee
Q 014302          300 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG  379 (427)
Q Consensus       300 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~  379 (427)
                       .++.+.......+++..+          ....++|.+++|+|++..||.   |+.|   |.|++||+..+..+.+...+
T Consensus       133 -vl~~~s~~p~~I~~~r~l----------~rq~sRvLslsw~~~~~~i~~---Gs~D---g~Iriwd~~~~~t~~~~~~~  195 (691)
T KOG2048|consen  133 -VLYDFSIGPDKITYKRSL----------MRQKSRVLSLSWNPTGTKIAG---GSID---GVIRIWDVKSGQTLHIITMQ  195 (691)
T ss_pred             -eEEEEecCCceEEEEeec----------ccccceEEEEEecCCccEEEe---cccC---ceEEEEEcCCCceEEEeeec
Confidence             666665555432221111          112458999999999999988   8888   88999999988766433222


Q ss_pred             eeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccccC
Q 014302          380 FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  423 (427)
Q Consensus       380 ~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~  423 (427)
                      +- +.....  .++.|.-.|-...+++.|-+.|.|+||+..+.+
T Consensus       196 ~d-~l~k~~--~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  196 LD-RLSKRE--PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             cc-ccccCC--ceEEEEEEEeecCcEEEecCCceEEEEcccCcc
Confidence            22 122211  134444333345678999999999999987754

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.61  E-value=5.3e-14  Score=120.74  Aligned_cols=252  Identities=15%  Similarity=0.297  Sum_probs=159.9

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCC----eEEEEeccCC
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG----GICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~----~i~iw~~~~~  175 (427)
                      .+.+++|||||+ .|.+...+-.|.||.+.+.  ....+ ......+..++|+||| ++.|...+.    .+.|....  
T Consensus        93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~--~~~~~-~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~--  166 (447)
T KOG4497|consen   93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--KGYLL-PHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCK--  166 (447)
T ss_pred             cceeeeECCCcceEeeeecceeEEEEEEeccc--eeEEe-cccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhH--
Confidence            788999999997 6667788999999999887  23332 2334467899999999 677666542    22222211  


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC------ceEEec-cCCeEEEEEccCC
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG------TPIRRG-FGGLSILKWSPTG  248 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~------~~~~~~-~~~v~~~~~sp~g  248 (427)
                                             .|..+..++.. ....+.+.|+|||..++.-      ..+.-+ .-++..++|+|.+
T Consensus       167 -----------------------~W~ll~~f~~d-T~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~  222 (447)
T KOG4497|consen  167 -----------------------AWILLKEFKLD-TIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN  222 (447)
T ss_pred             -----------------------HHHHHHhcCCC-cccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEecccc
Confidence                                   22333334433 5567799999999987622      111112 3688999999999


Q ss_pred             CEEEEEecCCcEEEEEcCCCCc--------------------------------ccc-----------------------
Q 014302          249 DYFFAAKFDGTFYLWETNTWTS--------------------------------EPW-----------------------  273 (427)
Q Consensus       249 ~~l~~~~~dg~v~iwd~~~~~~--------------------------------~~~-----------------------  273 (427)
                      ++|++|+.|+.+|+.+--+++.                                ..+                       
T Consensus       223 qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~p  302 (447)
T KOG4497|consen  223 QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTP  302 (447)
T ss_pred             ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcc
Confidence            9999999999988754222110                                000                       


Q ss_pred             ------------ccCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEE
Q 014302          274 ------------SSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW  340 (427)
Q Consensus       274 ------------~~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  340 (427)
                                  ....-.+..++||+|..++++-.+.- +.+++|++...+.    |.         .+....+|....|
T Consensus       303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l----~a---------vLiQk~piraf~W  369 (447)
T KOG4497|consen  303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL----HA---------VLIQKHPIRAFEW  369 (447)
T ss_pred             eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh----hh---------hhhhccceeEEEe
Confidence                        01123466799999999987532221 4678888776521    11         1122338899999


Q ss_pred             CCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302          341 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       341 sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g  412 (427)
                      +|....|++|..++      .+++|......++.+.-.||        +...+.|+-.   |..++.+..|-
T Consensus       370 dP~~prL~vctg~s------rLY~W~psg~~~V~vP~~GF--------~i~~l~W~~~---g~~i~l~~kDa  424 (447)
T KOG4497|consen  370 DPGRPRLVVCTGKS------RLYFWAPSGPRVVGVPKKGF--------NIQKLQWLQP---GEFIVLCGKDA  424 (447)
T ss_pred             CCCCceEEEEcCCc------eEEEEcCCCceEEecCCCCc--------eeeeEEecCC---CcEEEEEcCCc
Confidence            99999999974333      39999987755554433332        2445556543   55555554443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.61  E-value=9.9e-14  Score=117.35  Aligned_cols=141  Identities=15%  Similarity=0.305  Sum_probs=96.3

Q ss_pred             eeeEEcCCCCEEEEEeC----------CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEE
Q 014302          103 QGVSWHQHKHIVAFISG----------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIW  170 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~----------d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw  170 (427)
                      -.+.|+|+|++|++-..          -+...||.++........+.....+.|.+++|+|+|..++++.+  ...+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            35789999997765422          24566777755533333333344557999999999976655432  3679999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY  250 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~  250 (427)
                      +++         .                 ..+.                            ..+...+..+.|||+|++
T Consensus        89 d~~---------~-----------------~~i~----------------------------~~~~~~~n~i~wsP~G~~  114 (194)
T PF08662_consen   89 DVK---------G-----------------KKIF----------------------------SFGTQPRNTISWSPDGRF  114 (194)
T ss_pred             cCc---------c-----------------cEeE----------------------------eecCCCceEEEECCCCCE
Confidence            986         0                 0111                            112335668999999999


Q ss_pred             EEEEec---CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcC
Q 014302          251 FFAAKF---DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG  298 (427)
Q Consensus       251 l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~  298 (427)
                      |++++.   .|.|.+||+++.+......|. .+..++|+|||++++++...
T Consensus       115 l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~  164 (194)
T PF08662_consen  115 LVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTS  164 (194)
T ss_pred             EEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEec
Confidence            997764   467999999976665444443 47899999999999987753

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=3e-13  Score=130.47  Aligned_cols=249  Identities=16%  Similarity=0.210  Sum_probs=160.1

Q ss_pred             eccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC-CCccccc-cCcccccccccCCCCcceeEeehhcccCCCcee
Q 014302          138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP-GNAASVR-SGAASFLGALSRGPGTRWTLVDFLRSQNGEQIT  215 (427)
Q Consensus       138 ~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  215 (427)
                      ....|..+.+.++|.|+|..+++++.++.|++|+...+ ..|..+. .+  .....+...++.  .    +.+.....|.
T Consensus         8 lRyaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g--~~v~~ia~~s~~--f----~~~s~~~tv~   79 (933)
T KOG1274|consen    8 LRYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISG--ELVSSIACYSNH--F----LTGSEQNTVL   79 (933)
T ss_pred             chhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccC--ceeEEEeecccc--e----EEeeccceEE
Confidence            34578889999999999987888888999999998633 2222222 11  000011111110  0    0000000111


Q ss_pred             eeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEE
Q 014302          216 ALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILL  294 (427)
Q Consensus       216 ~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~  294 (427)
                      ...| |.+.   ....+.+..-++++++++.+|+++|.|+.|-.|++.++...... .+.+|.++|.++.|+|++.+||+
T Consensus        80 ~y~f-ps~~---~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAv  155 (933)
T KOG1274|consen   80 RYKF-PSGE---EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAV  155 (933)
T ss_pred             EeeC-CCCC---ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEE
Confidence            1111 1111   11234445668999999999999999999999999999877664 45599999999999999999998


Q ss_pred             EEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          295 AFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       295 ~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      ... +|.+++|++.+...  ++.+-....      .......+..++|+|+|..||+   -+.|   +.|++|+..+...
T Consensus       156 ss~-dG~v~iw~~~~~~~~~tl~~v~k~n------~~~~s~i~~~~aW~Pk~g~la~---~~~d---~~Vkvy~r~~we~  222 (933)
T KOG1274|consen  156 SSC-DGKVQIWDLQDGILSKTLTGVDKDN------EFILSRICTRLAWHPKGGTLAV---PPVD---NTVKVYSRKGWEL  222 (933)
T ss_pred             Eec-CceEEEEEcccchhhhhcccCCccc------cccccceeeeeeecCCCCeEEe---eccC---CeEEEEccCCcee
Confidence            654 45899999987632  221111111      1111235788999999766666   2333   5699999987665


Q ss_pred             EEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          373 ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .     ..++.........+++|.|.   |.-||.+..+|.|.+|+.
T Consensus       223 ~-----f~Lr~~~~ss~~~~~~wsPn---G~YiAAs~~~g~I~vWnv  261 (933)
T KOG1274|consen  223 Q-----FKLRDKLSSSKFSDLQWSPN---GKYIAASTLDGQILVWNV  261 (933)
T ss_pred             h-----eeecccccccceEEEEEcCC---CcEEeeeccCCcEEEEec
Confidence            3     12222222233668999997   888999999999999984

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.60  E-value=1.7e-13  Score=123.52  Aligned_cols=253  Identities=17%  Similarity=0.168  Sum_probs=163.9

Q ss_pred             EEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEE--ecCCeEEEEeccCCCCccccccCccccccccc
Q 014302          116 FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV--GCKGGICIWAPSYPGNAASVRSGAASFLGALS  193 (427)
Q Consensus       116 t~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~--g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  193 (427)
                      .++....++|||+...........+.....+.++.|+... .+++.  +++..+++|.-+  +.     ++         
T Consensus         7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n-~lvvas~~gdk~~~~~~K~--g~-----~~---------   69 (673)
T KOG4378|consen    7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRN-FLVVASMAGDKVMRIKEKD--GK-----TP---------   69 (673)
T ss_pred             eeccCCceEEeecccccCccccccCCCCCcceeeeccccc-eEEEeecCCceeEEEeccc--CC-----CC---------
Confidence            3444557899999887444444433334459999999776 33322  244667788654  11     00         


Q ss_pred             CCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-----------------ceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          194 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-----------------TPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-----------------~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                           ++..+..+.+.....|.+..++   .++..+                 ..++.|...|+++.+.-...|||+++.
T Consensus        70 -----~Vp~~~k~~gd~~~Cv~~~s~S---~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~  141 (673)
T KOG4378|consen   70 -----EVPRVRKLTGDNAFCVACASQS---LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD  141 (673)
T ss_pred             -----ccceeeccccchHHHHhhhhcc---eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc
Confidence                 1111111111111112222221   111111                 224568889999999999999999999


Q ss_pred             CCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          257 DGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      .|.|.|..+.++......  .....|.-+.|+|..++|+...+++|.+.+|++....+.+..           ...|+.+
T Consensus       142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-----------~~~HsAP  210 (673)
T KOG4378|consen  142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-----------SEAHSAP  210 (673)
T ss_pred             CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch-----------hhhccCC
Confidence            999999999988875443  334556789999999999998899989999988876443211           1113346


Q ss_pred             eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302          335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC  414 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i  414 (427)
                      ...++|+|....|.++  -+-|   +.|.+||+.+.......    ..   +. -...++|.+.   |..|++|.+.|+|
T Consensus       211 ~~gicfspsne~l~vs--VG~D---kki~~yD~~s~~s~~~l----~y---~~-Plstvaf~~~---G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVS--VGYD---KKINIYDIRSQASTDRL----TY---SH-PLSTVAFSEC---GTYLCAGNSKGEL  274 (673)
T ss_pred             cCcceecCCccceEEE--eccc---ceEEEeeccccccccee----ee---cC-CcceeeecCC---ceEEEeecCCceE
Confidence            6999999988887775  5555   67999999865543111    11   11 1235778775   9999999999999


Q ss_pred             EEEecc
Q 014302          415 CTYPLI  420 (427)
Q Consensus       415 ~~~~~~  420 (427)
                      .+|++.
T Consensus       275 i~YD~R  280 (673)
T KOG4378|consen  275 IAYDMR  280 (673)
T ss_pred             EEEecc
Confidence            999986

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.60  E-value=3.5e-14  Score=121.74  Aligned_cols=252  Identities=15%  Similarity=0.195  Sum_probs=161.3

Q ss_pred             ceeeeEEcCC----CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCC
Q 014302          101 DLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~----g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~  175 (427)
                      ....++|+-+    ..+||.|+.-|.|+|.|+...  +....+.+|...|+.+.+.|+..+++.+++. ..|++|+++  
T Consensus        91 sfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~--~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~--  166 (385)
T KOG1034|consen   91 SFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG--QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ--  166 (385)
T ss_pred             ceEEEEEEecCCCCCeeEEeecceeEEEEEecchh--hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc--
Confidence            4567778654    348999999999999998877  5556667899999999999998888777754 899999998  


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK  255 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  255 (427)
                                             .-.++..+.+                       +.+|.+.|.++.|+++|.+|++++
T Consensus       167 -----------------------~~~Cv~VfGG-----------------------~egHrdeVLSvD~~~~gd~i~ScG  200 (385)
T KOG1034|consen  167 -----------------------TDVCVAVFGG-----------------------VEGHRDEVLSVDFSLDGDRIASCG  200 (385)
T ss_pred             -----------------------CCeEEEEecc-----------------------cccccCcEEEEEEcCCCCeeeccC
Confidence                                   1133332221                       345788999999999999999999


Q ss_pred             cCCcEEEEEcCCCCcc-------c---------c-------------ccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          256 FDGTFYLWETNTWTSE-------P---------W-------------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~~-------~---------~-------------~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                      .|.++++|++...+..       .         +             .-|...|.++.|-  |.++++=+ .++.|..|.
T Consensus       201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSks-cenaI~~w~  277 (385)
T KOG1034|consen  201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKS-CENAIVCWK  277 (385)
T ss_pred             CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecc-cCceEEEEe
Confidence            9999999999843210       0         0             0345555666664  56666543 333666665


Q ss_pred             eCCCCCCccccccccccccc--eeec-cCCceeEE--EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeee
Q 014302          307 FASKPPSLDAHLLPVDLPDI--VSLT-GSQGIEKI--AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI  381 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~v--~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~  381 (427)
                      .......+. ...|-+....  ..+. ....|+-+  +|+|-+++||.   |...   |.|.+||++..+....+   .+
T Consensus       278 pgkl~e~~~-~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~---gnq~---g~v~vwdL~~~ep~~~t---tl  347 (385)
T KOG1034|consen  278 PGKLEESIH-NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL---GNQS---GKVYVWDLDNNEPPKCT---TL  347 (385)
T ss_pred             cchhhhhhh-ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh---ccCC---CcEEEEECCCCCCccCc---eE
Confidence            432111111 0111111111  0111 11245554  55688999988   6655   77999999876653211   11


Q ss_pred             eCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          382 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       382 ~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .-.......-..+|..   +|.+|...+++|.|.-|+
T Consensus       348 ~~s~~~~tVRQ~sfS~---dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  348 THSKSGSTVRQTSFSR---DGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             Eeccccceeeeeeecc---cCcEEEEEeCCCcEEEEE
Confidence            1111111133455543   488888888999998887

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.60  E-value=3.9e-14  Score=121.25  Aligned_cols=219  Identities=17%  Similarity=0.256  Sum_probs=147.0

Q ss_pred             ceeeeEEc-------CCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCe---eEEEEccCCCceEEEecCCeEEEE
Q 014302          101 DLQGVSWH-------QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDV---KVLEWRPNGGRSLSVGCKGGICIW  170 (427)
Q Consensus       101 ~V~~l~~s-------p~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v---~~l~~sp~~~~~la~g~~~~i~iw  170 (427)
                      .|...+|=       |+..++|+.+.+.-|++||.-++..........|...+   .+++|+||| ..|.+|....|+++
T Consensus       106 tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaGykrcirvF  184 (406)
T KOG2919|consen  106 TVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAGYKRCIRVF  184 (406)
T ss_pred             EEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeecccceEEEe
Confidence            56666664       67779999999999999999988333332233355544   589999999 67777888999999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC-CCCcccCc-----------------eE
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRFPGLGT-----------------PI  232 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~-----------------~~  232 (427)
                      ++..+|......+.                  +..-+....+-+.+++|+|- .+.++.++                 .+
T Consensus       185 dt~RpGr~c~vy~t------------------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll  246 (406)
T KOG2919|consen  185 DTSRPGRDCPVYTT------------------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL  246 (406)
T ss_pred             eccCCCCCCcchhh------------------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee
Confidence            99766653322222                  11112233566778899884 33444332                 23


Q ss_pred             EeccCCeEEEEEccCCCEEEEEec-CCcEEEEEcCCCCccccc--cC---CCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          233 RRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWS--ST---SGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       233 ~~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~--~~---~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                      -+|.++|+.++|.++|+.|++|.. |-.|-.||++......+.  .|   +..-.-+...|+|++|+++ +.++.+.+|+
T Consensus       247 ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG-~tdG~V~vwd  325 (406)
T KOG2919|consen  247 GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASG-DTDGSVRVWD  325 (406)
T ss_pred             cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeecc-CCCccEEEEe
Confidence            458899999999999999998765 778999999977653332  22   3333455667999999876 4555777777


Q ss_pred             eCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEE
Q 014302          307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                      +.+.-..  .         ......+.-++.++++|--..+|++
T Consensus       326 lk~~gn~--~---------sv~~~~sd~vNgvslnP~mpilats  358 (406)
T KOG2919|consen  326 LKDLGNE--V---------SVTGNYSDTVNGVSLNPIMPILATS  358 (406)
T ss_pred             cCCCCCc--c---------cccccccccccceecCcccceeeec
Confidence            7663110  0         0111233468999999998888884

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=3.1e-13  Score=129.65  Aligned_cols=213  Identities=21%  Similarity=0.273  Sum_probs=131.9

Q ss_pred             CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCCccccccCcccccccccCCC
Q 014302          120 STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGP  196 (427)
Q Consensus       120 d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (427)
                      +..|.|||++...  . .....|...+.+++|||||++++.++.+   ..|.+|++.         ++            
T Consensus       183 ~~~i~i~d~dg~~--~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~---------tg------------  238 (429)
T PRK01742        183 PYEVRVADYDGFN--Q-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR---------SG------------  238 (429)
T ss_pred             eEEEEEECCCCCC--c-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC---------CC------------
Confidence            4688899887652  2 2334566789999999999655555433   358889886         11            


Q ss_pred             CcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE-ecCCcEEEE--EcCCCCcccc
Q 014302          197 GTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLW--ETNTWTSEPW  273 (427)
Q Consensus       197 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iw--d~~~~~~~~~  273 (427)
                        ....+..                             ..+....++|+|||+.|+.+ +.+|.+.||  |+.++....+
T Consensus       239 --~~~~l~~-----------------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l  287 (429)
T PRK01742        239 --ARKVVAS-----------------------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL  287 (429)
T ss_pred             --ceEEEec-----------------------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence              1011110                             11123357899999988854 467876555  6666655555


Q ss_pred             ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302          274 SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       274 ~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      ..+...+..++|+|||+.|++++..++...+|.+.......            ..+.+. . ..++|+|||++|++.  +
T Consensus       288 t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~------------~~l~~~-~-~~~~~SpDG~~ia~~--~  351 (429)
T PRK01742        288 TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA------------SLVGGR-G-YSAQISADGKTLVMI--N  351 (429)
T ss_pred             ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe------------EEecCC-C-CCccCCCCCCEEEEE--c
Confidence            56666788999999999998877655544444443211000            001111 1 357899999999885  3


Q ss_pred             CCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          354 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      ...     +.+||+.++....+...      ...   ...+|.|+   |..|+.+..+|.+.++.+.
T Consensus       352 ~~~-----i~~~Dl~~g~~~~lt~~------~~~---~~~~~sPd---G~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        352 GDN-----VVKQDLTSGSTEVLSST------FLD---ESPSISPN---GIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             CCC-----EEEEECCCCCeEEecCC------CCC---CCceECCC---CCEEEEEEcCCCceEEEEE
Confidence            222     77799988775433211      111   14568885   7778888788888776654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.60  E-value=1.3e-14  Score=135.02  Aligned_cols=220  Identities=17%  Similarity=0.239  Sum_probs=160.5

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~  174 (427)
                      |.+|  .|+|++|+.||+++|+|+.|..|.||.-..    .-.+...|.+.|.|+.|+|-. +.|++.+-...-+|..+ 
T Consensus        49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl----EG~LkYSH~D~IQCMsFNP~~-h~LasCsLsdFglWS~~-  122 (1081)
T KOG1538|consen   49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL----EGILKYSHNDAIQCMSFNPIT-HQLASCSLSDFGLWSPE-  122 (1081)
T ss_pred             cccccceEEEEEEccCCceeccCCCceeEEEecccc----cceeeeccCCeeeEeecCchH-HHhhhcchhhccccChh-
Confidence            4455  799999999999999999999999997443    335667899999999999998 67777766667789876 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------------eEEe---c
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT----------------PIRR---G  235 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------~~~~---~  235 (427)
                                                 .....+.....++.+.+|+.||++++.|.                .+.+   .
T Consensus       123 ---------------------------qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~  175 (1081)
T KOG1538|consen  123 ---------------------------QKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGS  175 (1081)
T ss_pred             ---------------------------hhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCC
Confidence                                       01223444577889999999999965331                1222   3


Q ss_pred             cCCeEEEEEccCC-----CEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          236 FGGLSILKWSPTG-----DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       236 ~~~v~~~~~sp~g-----~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      ..+|++++|+|..     ..+++.....++..|.+.......-........++.+.++|.+++.|+++.    ..++...
T Consensus       176 Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk----~L~~fTR  251 (1081)
T KOG1538|consen  176 NSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDK----QLSLFTR  251 (1081)
T ss_pred             CCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCC----ceEEEee
Confidence            4689999999854     367788888888888876544333333445566888999999999988776    5555554


Q ss_pred             CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          311 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ....-|...          ....+|+.++..|+++++++   |+.|   |+|..|++-.
T Consensus       252 ~GvrLGTvg----------~~D~WIWtV~~~PNsQ~v~~---GCqD---GTiACyNl~f  294 (1081)
T KOG1538|consen  252 DGVRLGTVG----------EQDSWIWTVQAKPNSQYVVV---GCQD---GTIACYNLIF  294 (1081)
T ss_pred             cCeEEeecc----------ccceeEEEEEEccCCceEEE---EEcc---CeeehhhhHH
Confidence            221111111          11238999999999999999   8888   8899998753

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=1.9e-13  Score=122.38  Aligned_cols=233  Identities=17%  Similarity=0.210  Sum_probs=159.2

Q ss_pred             CEEEEEe-CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCccccccCccccc
Q 014302          112 HIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFL  189 (427)
Q Consensus       112 ~~lat~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~~~~~~~~~~~  189 (427)
                      .+++++. ....+.+|.+...  .....+.-..+.|.+++-+|+| .+|+.| -.+.+.+|.+.         +|     
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~--~~~~q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWels---------sG-----  113 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKK--DQVVQYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELS---------SG-----  113 (476)
T ss_pred             hheeeecccCccccccccCch--hhhhhhcccccceeeeecCCCc-eEEEeecccCcEEEEEec---------cc-----
Confidence            4555553 3457888988766  2222334466789999999999 555555 66999999998         22     


Q ss_pred             ccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCC-
Q 014302          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW-  268 (427)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~-  268 (427)
                                 .++.                          .+..|.+.|+++.|+-||.+|++|+.||.|.+|++... 
T Consensus       114 -----------~LL~--------------------------v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen  114 -----------ILLN--------------------------VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             -----------cHHH--------------------------HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec
Confidence                       1122                          34557889999999999999999999999999986431 


Q ss_pred             ------Cc---cccccCCCCeeEEEECCC--CCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302          269 ------TS---EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK  337 (427)
Q Consensus       269 ------~~---~~~~~~~~~v~~v~~spd--g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  337 (427)
                            ..   ..+..|.-.|+++...+-  ..+|+++ +.|.++++|++.....-+             ...-...+.+
T Consensus       157 ~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g~LLl-------------ti~fp~si~a  222 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLGVLLL-------------TITFPSSIKA  222 (476)
T ss_pred             ccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccceeeE-------------EEecCCccee
Confidence                  11   234489999999888764  3566665 555588888887752211             1111227899


Q ss_pred             EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE-----------EEeeeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302          338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI-----------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS  406 (427)
Q Consensus       338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~  406 (427)
                      |+.+|-++.+.+   |+++   |.|.+.++...+-.           ..+....+.|........|++..-   +|.+|.
T Consensus       223 v~lDpae~~~yi---Gt~~---G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~---DgtlLl  293 (476)
T KOG0646|consen  223 VALDPAERVVYI---GTEE---GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST---DGTLLL  293 (476)
T ss_pred             EEEcccccEEEe---cCCc---ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec---CccEEE
Confidence            999999999977   8888   77888887543311           111111112222212355777654   499999


Q ss_pred             EEeeCceEEEEeccc
Q 014302          407 VCWSSGFCCTYPLIF  421 (427)
Q Consensus       407 v~~~~g~i~~~~~~~  421 (427)
                      .|-.||.+++|+++=
T Consensus       294 SGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYS  308 (476)
T ss_pred             eeCCCCCEEEEecch
Confidence            999999999999873

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.59  E-value=2.4e-13  Score=114.78  Aligned_cols=210  Identities=14%  Similarity=0.234  Sum_probs=139.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee----ccCCcCCeeEEEEcc--CCCceEEEecCCeEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL----TSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~----~~~~~~~v~~l~~sp--~~~~~la~g~~~~i~iw~~~~  174 (427)
                      .|.|+.|.|++..||+.. |..|.+|+++........+    ...+....++-+|||  ++ ..+++.+++++..||+. 
T Consensus       125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg-nqv~tt~d~tl~~~D~R-  201 (370)
T KOG1007|consen  125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG-NQVATTSDSTLQFWDLR-  201 (370)
T ss_pred             ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc-ceEEEeCCCcEEEEEcc-
Confidence            789999999999998885 8899999998873311111    123566788999999  45 78899999999999997 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-E
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-A  253 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~  253 (427)
                              +.                .....                         .-..|...+..+.|+|+.++++ +
T Consensus       202 --------T~----------------~~~~s-------------------------I~dAHgq~vrdlDfNpnkq~~lvt  232 (370)
T KOG1007|consen  202 --------TM----------------KKNNS-------------------------IEDAHGQRVRDLDFNPNKQHILVT  232 (370)
T ss_pred             --------ch----------------hhhcc-------------------------hhhhhcceeeeccCCCCceEEEEE
Confidence                    11                11111                         1223667788999999988654 9


Q ss_pred             EecCCcEEEEEcCCCCcc--ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC-----------CCcccccc-
Q 014302          254 AKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP-----------PSLDAHLL-  319 (427)
Q Consensus       254 ~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~-  319 (427)
                      ++.||.|+|||.+..+..  .+..|..+|.++.|+|.-..|+.+++.+..+..+....-.           ....++.. 
T Consensus       233 ~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dse  312 (370)
T KOG1007|consen  233 CGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSE  312 (370)
T ss_pred             cCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhH
Confidence            999999999999987763  3448999999999999765554444444444444333211           01111100 


Q ss_pred             --cccccc--c-eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          320 --PVDLPD--I-VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       320 --~~~~~~--~-~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                        ...++.  . ....+...|.+++||.-..++..+  -+-|   |.+.|=.+
T Consensus       313 er~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS--LSYD---GRviIs~V  360 (370)
T KOG1007|consen  313 ERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS--LSYD---GRVIISSV  360 (370)
T ss_pred             HhcccccccccccccccccceEEEeeccCCCeeEEE--eccC---ceEEeecC
Confidence              001111  1 223356689999999888888765  3334   55665444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=8.3e-14  Score=128.27  Aligned_cols=234  Identities=18%  Similarity=0.318  Sum_probs=162.1

Q ss_pred             ceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCc
Q 014302          135 ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ  213 (427)
Q Consensus       135 ~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (427)
                      ....+.+|.+.|.+|+..|.| ..|++|++ |+++||.+.         ++                .|+....  ....
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~---------Tg----------------Rcvr~~~--~d~~  443 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIA---------TG----------------RCVRTVQ--FDSE  443 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEee---------cc----------------eEEEEEe--ecce
Confidence            445667899999999999988 78888877 999999997         33                3444333  2457


Q ss_pred             eeeeEeCCCCCC--c----------------------------ccC-----------------------c--eEEeccCC
Q 014302          214 ITALSWGPDGRF--P----------------------------GLG-----------------------T--PIRRGFGG  238 (427)
Q Consensus       214 v~~~~~spdg~~--l----------------------------~~~-----------------------~--~~~~~~~~  238 (427)
                      |.+++|+|.+..  +                            +..                       .  ..-.|...
T Consensus       444 I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~  523 (733)
T KOG0650|consen  444 IRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKS  523 (733)
T ss_pred             eEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCc
Confidence            889999988776  0                            000                       0  01126678


Q ss_pred             eEEEEEccCCCEEEEEecC---CcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302          239 LSILKWSPTGDYFFAAKFD---GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  314 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~  314 (427)
                      |..+.|+..|.||++...+   ..|.|+++..... ..+....+.+.++.|+|...+|++++..  .++++++.....  
T Consensus       524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqel--  599 (733)
T KOG0650|consen  524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQEL--  599 (733)
T ss_pred             cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc--ceEEEehhHHHH--
Confidence            9999999999999965543   4688999876655 4555778899999999999998877543  455555554310  


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEE
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  394 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (427)
                      .          ...+.+...|..|+.+|.|..|++   ++.|   +.+..||+....-    |...++-....  ...++
T Consensus       600 v----------KkL~tg~kwiS~msihp~GDnli~---gs~d---~k~~WfDldlssk----Pyk~lr~H~~a--vr~Va  657 (733)
T KOG0650|consen  600 V----------KKLLTGSKWISSMSIHPNGDNLIL---GSYD---KKMCWFDLDLSSK----PYKTLRLHEKA--VRSVA  657 (733)
T ss_pred             H----------HHHhcCCeeeeeeeecCCCCeEEE---ecCC---CeeEEEEcccCcc----hhHHhhhhhhh--hhhhh
Confidence            0          111233448999999999999988   7777   6699999864321    11122222222  34788


Q ss_pred             eccCCCCCceeEEEeeCceEEEEeccccCCC
Q 014302          395 FHDKFKQGPLLSVCWSSGFCCTYPLIFRSHL  425 (427)
Q Consensus       395 f~~~~~~g~~l~v~~~~g~i~~~~~~~~~~~  425 (427)
                      ||+.   -.|+|+|..||.+++|--+.-++|
T Consensus       658 ~H~r---yPLfas~sdDgtv~Vfhg~VY~Dl  685 (733)
T KOG0650|consen  658 FHKR---YPLFASGSDDGTVIVFHGMVYNDL  685 (733)
T ss_pred             hccc---cceeeeecCCCcEEEEeeeeehhh
Confidence            9997   458999999999999874444444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.9e-13  Score=131.02  Aligned_cols=180  Identities=15%  Similarity=0.254  Sum_probs=110.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~  176 (427)
                      .+.+.+|||||++||+.+.+   ..|++||+..+......   ...+....++|+|||..++.+.. ++.+.||.++.. 
T Consensus       205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~---~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~-  280 (429)
T PRK01742        205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA---SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN-  280 (429)
T ss_pred             ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe---cCCCccCceeECCCCCEEEEEEecCCcEEEEEEECC-
Confidence            68899999999999987654   47999998776222222   12223457899999955555543 466777766510 


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEe
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAK  255 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~  255 (427)
                            ++              ..   .                          .+..+...+....|+|||+.|+ ++.
T Consensus       281 ------~~--------------~~---~--------------------------~lt~~~~~~~~~~wSpDG~~i~f~s~  311 (429)
T PRK01742        281 ------GG--------------TP---S--------------------------QLTSGAGNNTEPSWSPDGQSILFTSD  311 (429)
T ss_pred             ------CC--------------Ce---E--------------------------eeccCCCCcCCEEECCCCCEEEEEEC
Confidence                  00              00   0                          1111233456788999999887 555


Q ss_pred             cCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          256 FDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      .++..+||++..... .....+..  ..+.|+|||++|++++. + .+..|++.......      +        .....
T Consensus       312 ~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-~-~i~~~Dl~~g~~~~------l--------t~~~~  373 (429)
T PRK01742        312 RSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-D-NVVKQDLTSGSTEV------L--------SSTFL  373 (429)
T ss_pred             CCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-C-CEEEEECCCCCeEE------e--------cCCCC
Confidence            678889998764332 22223333  46789999999988755 3 34446554431100      0        00012


Q ss_pred             eeEEEECCCCCEEEEEE
Q 014302          335 IEKIAWDASGERLAVSY  351 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~  351 (427)
                      ..+++|+|||++|+.+.
T Consensus       374 ~~~~~~sPdG~~i~~~s  390 (429)
T PRK01742        374 DESPSISPNGIMIIYSS  390 (429)
T ss_pred             CCCceECCCCCEEEEEE
Confidence            35678999999999853

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.58  E-value=1.2e-13  Score=129.32  Aligned_cols=209  Identities=16%  Similarity=0.177  Sum_probs=157.4

Q ss_pred             eEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcccccc
Q 014302          105 VSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  183 (427)
Q Consensus       105 l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~  183 (427)
                      +++-+ ++-+|++|+.|.++.+|.....  .+.....+|+..|.+++-..++ .++.++.|.++++|...          
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~--~P~~~LkgH~snVC~ls~~~~~-~~iSgSWD~TakvW~~~----------  130 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQA--EPLYTLKGHKSNVCSLSIGEDG-TLISGSWDSTAKVWRIG----------  130 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCCC--CchhhhhccccceeeeecCCcC-ceEecccccceEEecch----------
Confidence            66665 4447999999999999988877  7778888999999999988777 56666677999999887          


Q ss_pred             CcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC--------------ceEEeccCCeEEEEEccCCC
Q 014302          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG--------------TPIRRGFGGLSILKWSPTGD  249 (427)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--------------~~~~~~~~~v~~~~~sp~g~  249 (427)
                                       .+...+.+| ...|..++.-|++.++.-+              +.+.+|..-|+.+++-+++ 
T Consensus       131 -----------------~l~~~l~gH-~asVWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-  191 (745)
T KOG0301|consen  131 -----------------ELVYSLQGH-TASVWAVASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-  191 (745)
T ss_pred             -----------------hhhcccCCc-chheeeeeecCCCcEEeccCcceeeeccCCchhhhhccchhheeeeEEecCC-
Confidence                             445557777 8888888888887653211              2356688999999998765 


Q ss_pred             EEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceee
Q 014302          250 YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       250 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      .+++++.||.|++|++.........+|...+.++....++..+++++ +++++++|.....               ...+
T Consensus       192 ~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g-EDrtlriW~~~e~---------------~q~I  255 (745)
T KOG0301|consen  192 HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTG-EDRTLRIWKKDEC---------------VQVI  255 (745)
T ss_pred             CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEec-CCceEEEeecCce---------------EEEE
Confidence            47788889999999995444466779999999999888888888764 5547777765532               1122


Q ss_pred             ccCC-ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          330 TGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       330 ~~~~-~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      .+.+ .|+++.+-++|..+ +   |+.|   |.|+||...
T Consensus       256 ~lPttsiWsa~~L~NgDIv-v---g~SD---G~VrVfT~~  288 (745)
T KOG0301|consen  256 TLPTTSIWSAKVLLNGDIV-V---GGSD---GRVRVFTVD  288 (745)
T ss_pred             ecCccceEEEEEeeCCCEE-E---eccC---ceEEEEEec
Confidence            2222 78888888888754 4   5566   779999875

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.58  E-value=5.3e-13  Score=112.71  Aligned_cols=221  Identities=17%  Similarity=0.226  Sum_probs=155.6

Q ss_pred             EEEEEe----CCCeEEEEEccCCCCcc-eeeccCCcCCeeEEEEccCCCceEEEecC--------CeEEEEeccCCCCcc
Q 014302          113 IVAFIS----GSTQVIVRDYEDSGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCK--------GGICIWAPSYPGNAA  179 (427)
Q Consensus       113 ~lat~~----~d~~v~vwd~~~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~la~g~~--------~~i~iw~~~~~~~~~  179 (427)
                      .+++|+    .|..|.+-+++..+... ......|.+.|+.++-+|....+|++...        .++.||.+..+-+..
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S  107 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS  107 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence            455664    36788888887763322 23334577899999999999889888632        235599987332221


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-------------e----EE-----eccC
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-------------P----IR-----RGFG  237 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-------------~----~~-----~~~~  237 (427)
                      +                ...+.++..+.....+.|.|+.|.|++..+++..             .    +.     .+..
T Consensus       108 ~----------------~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~  171 (370)
T KOG1007|consen  108 N----------------SSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRH  171 (370)
T ss_pred             c----------------cchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccc
Confidence            1                1123455566655577899999999987744221             1    00     1334


Q ss_pred             CeEEEEEcc--CCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-
Q 014302          238 GLSILKWSP--TGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-  312 (427)
Q Consensus       238 ~v~~~~~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-  312 (427)
                      ..++-+|||  +|..+++.+ |++++.||+++.++....  .|...|..+.|+|+-+++++++++++.+++|+....+. 
T Consensus       172 ~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p  250 (370)
T KOG1007|consen  172 SFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP  250 (370)
T ss_pred             eecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc
Confidence            567778998  777777665 899999999988874333  88899999999999999998889998999998877421 


Q ss_pred             --CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          313 --SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       313 --~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                        .+.+|..              .|++|.|+|--..|+.+  ++.|   ..|.+|...+
T Consensus       251 v~el~~HsH--------------WvW~VRfn~~hdqLiLs--~~SD---s~V~Lsca~s  290 (370)
T KOG1007|consen  251 VQELPGHSH--------------WVWAVRFNPEHDQLILS--GGSD---SAVNLSCASS  290 (370)
T ss_pred             ccccCCCce--------------EEEEEEecCccceEEEe--cCCC---ceeEEEeccc
Confidence              3334433              89999999987777765  7777   5699998754

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.57  E-value=4.6e-14  Score=121.08  Aligned_cols=202  Identities=10%  Similarity=0.206  Sum_probs=126.1

Q ss_pred             ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCCCCcceeec---cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      .|+.|.++|+. ++|++++.|.+||+|++++.  ......   .+|.+.|.++.|+++|.+++.+|.|.++++|+++.+.
T Consensus       137 sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~  214 (385)
T KOG1034|consen  137 SINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE  214 (385)
T ss_pred             cchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence            99999999988 48899999999999999988  344333   3499999999999999888888889999999997322


Q ss_pred             CccccccC----cccccccccCCCCcceeEeehhcccCCCcee-----------------eeEeCCCC--CCcc------
Q 014302          177 NAASVRSG----AASFLGALSRGPGTRWTLVDFLRSQNGEQIT-----------------ALSWGPDG--RFPG------  227 (427)
Q Consensus       177 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----------------~~~~spdg--~~l~------  227 (427)
                      -+..+...    +..+..+++.... .+.....-+.| ...|.                 -++|-|..  +.+.      
T Consensus       215 f~~~lE~s~~~~~~~t~~pfpt~~~-~fp~fst~diH-rnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~e  292 (385)
T KOG1034|consen  215 FKNKLELSITYSPNKTTRPFPTPKT-HFPDFSTTDIH-RNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPE  292 (385)
T ss_pred             HhhhhhhhcccCCCCccCcCCcccc-ccccccccccc-cchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCc
Confidence            11100000    0000000110000 00000001111 22232                 23444410  0000      


Q ss_pred             -cCce---EEeccCCeEEEE--EccCCCEEEEEecCCcEEEEEcCCCCccccc-----cCCCCeeEEEECCCCCEEEEEE
Q 014302          228 -LGTP---IRRGFGGLSILK--WSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----STSGFVTGATWDPEGRMILLAF  296 (427)
Q Consensus       228 -~~~~---~~~~~~~v~~~~--~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~v~~spdg~~l~~~~  296 (427)
                       ..+.   +......++.+.  |.|-++.||.|...|.|.+||++........     .....|...+||.||+.|+..+
T Consensus       293 s~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vc  372 (385)
T KOG1034|consen  293 SATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVC  372 (385)
T ss_pred             cceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEe
Confidence             0011   112334566655  5688899999999999999999987763221     4456799999999999998765


Q ss_pred             cCCceeeeeee
Q 014302          297 AGSLTLGSIHF  307 (427)
Q Consensus       297 ~~~~~i~~~~~  307 (427)
                      . +++++.|+.
T Consensus       373 d-d~~Vwrwdr  382 (385)
T KOG1034|consen  373 D-DGTVWRWDR  382 (385)
T ss_pred             C-CCcEEEEEe
Confidence            4 447777764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.57  E-value=9.2e-12  Score=115.66  Aligned_cols=242  Identities=10%  Similarity=0.095  Sum_probs=143.0

Q ss_pred             EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCccccccccc
Q 014302          115 AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALS  193 (427)
Q Consensus       115 at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  193 (427)
                      ++...++.|.+|++...+.........+.+....++++|+++.+++++. ++.|.+|+++..+                 
T Consensus         6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-----------------   68 (330)
T PRK11028          6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-----------------   68 (330)
T ss_pred             EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-----------------
Confidence            3346789999999964321111122223456788999999954545443 4888889886100                 


Q ss_pred             CCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe-cCCcEEEEEcCCCCc-c
Q 014302          194 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTS-E  271 (427)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~-~  271 (427)
                           .+....                          ... ..+....++++|++++|++++ .++.|.+|++.+... .
T Consensus        69 -----~l~~~~--------------------------~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~  116 (330)
T PRK11028         69 -----ALTFAA--------------------------ESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV  116 (330)
T ss_pred             -----ceEEee--------------------------eec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC
Confidence                 000000                          000 112345789999999999665 488999999974322 1


Q ss_pred             c---cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEE
Q 014302          272 P---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA  348 (427)
Q Consensus       272 ~---~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La  348 (427)
                      .   ...+......++++|+|++++++...++.+.+|++... ..+.....     .......+.....++|+|+|++|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~-g~l~~~~~-----~~~~~~~g~~p~~~~~~pdg~~ly  190 (330)
T PRK11028        117 APIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD-GHLVAQEP-----AEVTTVEGAGPRHMVFHPNQQYAY  190 (330)
T ss_pred             CceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC-CcccccCC-----CceecCCCCCCceEEECCCCCEEE
Confidence            1   11233456778899999999888888789999998652 11111000     000111123567899999999998


Q ss_pred             EEEecCCCcceeEEEEEEecc--CceEEEeeeeeeeCC-CCCCCceeEEeccCCCCCceeEEE-eeCceEEEEec
Q 014302          349 VSYKGGDDIYKGLIAIYDARR--TPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVC-WSSGFCCTYPL  419 (427)
Q Consensus       349 ~~~~~~~d~~~g~i~vwd~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~g~~l~v~-~~~g~i~~~~~  419 (427)
                      ++..++     ++|.+|++..  +.+..+.....+... .....+..+.|+|+   |..|.|+ ..++.|.+|++
T Consensus       191 v~~~~~-----~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd---g~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        191 CVNELN-----SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD---GRHLYACDRTASLISVFSV  257 (330)
T ss_pred             EEecCC-----CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC---CCEEEEecCCCCeEEEEEE
Confidence            864333     5699999973  333222222111110 01112346888886   5556665 44788988876

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=4.8e-13  Score=128.74  Aligned_cols=204  Identities=14%  Similarity=0.170  Sum_probs=126.2

Q ss_pred             ceeeeEEcCCCCEEEEEeC---CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCe--EEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGG--ICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~--i~iw~~~~  174 (427)
                      .+.+.+|+|||+.|+..+.   +..|.+||+..+  .... ...+.+.+.+.+|+|||+.++.+.. ++.  |.+|++. 
T Consensus       203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g--~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~-  278 (435)
T PRK05137        203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG--QREL-VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLR-  278 (435)
T ss_pred             CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC--cEEE-eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECC-
Confidence            6889999999999988764   468999998776  2222 2345567788999999966655544 344  4455554 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                              ++              .  ...                           +..+........|+|||++|+..
T Consensus       279 --------~~--------------~--~~~---------------------------Lt~~~~~~~~~~~spDG~~i~f~  307 (435)
T PRK05137        279 --------SG--------------T--TTR---------------------------LTDSPAIDTSPSYSPDGSQIVFE  307 (435)
T ss_pred             --------CC--------------c--eEE---------------------------ccCCCCccCceeEcCCCCEEEEE
Confidence                    11              0  000                           11112234457899999988855


Q ss_pred             e-cCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302          255 K-FDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       255 ~-~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      + .+|  .|++||+..++...+......+..+.|+|||++|++...+.+  .++++++.....              ..+
T Consensus       308 s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--------------~~l  373 (435)
T PRK05137        308 SDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--------------RIL  373 (435)
T ss_pred             ECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--------------Eec
Confidence            4 333  577888776655554444556778899999999998765443  455555433210              001


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      .....+..+.|+|||++|+.............|+++++..+...
T Consensus       374 t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~  417 (435)
T PRK05137        374 TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER  417 (435)
T ss_pred             cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence            11124578899999999987543221100024888888665543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.57  E-value=1.5e-13  Score=127.51  Aligned_cols=252  Identities=18%  Similarity=0.173  Sum_probs=158.6

Q ss_pred             eEEcCC---CCEEEEEeCCCeEEEEEccCCCCc--c--eeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302          105 VSWHQH---KHIVAFISGSTQVIVRDYEDSGKD--A--CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (427)
Q Consensus       105 l~~sp~---g~~lat~~~d~~v~vwd~~~~~~~--~--~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~  177 (427)
                      ..|++.   ...||.+.+||.|.++|.......  .  ......|...|.++.|.|-...++...+|.++++||+.    
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk----  130 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK----  130 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec----
Confidence            455542   238899999999999987655111  1  22334599999999999944334455577999999997    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEec
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKF  256 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~  256 (427)
                           ..                .+    .                    -+....+|.+.+.+++|.|+...++ +|+.
T Consensus       131 -----~s----------------~l----~--------------------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgR  165 (720)
T KOG0321|consen  131 -----TS----------------RL----V--------------------GGRLNLGHTGSVKSECFMPTNPAVFCTGGR  165 (720)
T ss_pred             -----cc----------------ee----e--------------------cceeecccccccchhhhccCCCcceeeccC
Confidence                 11                00    0                    0113445788899999999888665 9999


Q ss_pred             CCcEEEEEcCCCCcc----------------------------ccccCCCCeeE---EEECCCCCEEEEEEcCCceeeee
Q 014302          257 DGTFYLWETNTWTSE----------------------------PWSSTSGFVTG---ATWDPEGRMILLAFAGSLTLGSI  305 (427)
Q Consensus       257 dg~v~iwd~~~~~~~----------------------------~~~~~~~~v~~---v~~spdg~~l~~~~~~~~~i~~~  305 (427)
                      ||.|.|||++-....                            .+..+...|.+   +.+..|...|++++..|+.|++|
T Consensus       166 Dg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVW  245 (720)
T KOG0321|consen  166 DGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVW  245 (720)
T ss_pred             CCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEE
Confidence            999999999754310                            11134445555   66778899999988878899999


Q ss_pred             eeCCCCCCccccccccc-cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302          306 HFASKPPSLDAHLLPVD-LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP  384 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~  384 (427)
                      ++......+.......+ ++..  -...-.+.++..+..|.+|.++   +.|   +.|++|++.+..   ..|.+.+.+.
T Consensus       246 DLRk~~~~~r~ep~~~~~~~t~--skrs~G~~nL~lDssGt~L~As---CtD---~sIy~ynm~s~s---~sP~~~~sg~  314 (720)
T KOG0321|consen  246 DLRKNYTAYRQEPRGSDKYPTH--SKRSVGQVNLILDSSGTYLFAS---CTD---NSIYFYNMRSLS---ISPVAEFSGK  314 (720)
T ss_pred             eecccccccccCCCcccCccCc--ccceeeeEEEEecCCCCeEEEE---ecC---CcEEEEeccccC---cCchhhccCc
Confidence            99886444433322221 0000  0011267888888999998774   445   459999997643   2333333332


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ......+.-...|   ++.-|+.|.++++..+|-+
T Consensus       315 ~~~sf~vks~lSp---d~~~l~SgSsd~~ayiw~v  346 (720)
T KOG0321|consen  315 LNSSFYVKSELSP---DDCSLLSGSSDEQAYIWVV  346 (720)
T ss_pred             ccceeeeeeecCC---CCceEeccCCCcceeeeee
Confidence            2111111111122   3555777778887777643

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=2.2e-14  Score=141.35  Aligned_cols=205  Identities=18%  Similarity=0.269  Sum_probs=143.1

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .|..+.|++.+. +||+|+.||.|.|||++........-.......|.+++|+-.-.++||+++. +.+.|||+++    
T Consensus       118 ~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~----  193 (1049)
T KOG0307|consen  118 PVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK----  193 (1049)
T ss_pred             ceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC----
Confidence            899999999876 9999999999999999886322222133366789999999887789999987 7899999981    


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EEEEEecC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YFFAAKFD  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d  257 (427)
                                                      ..+|..++.++             ....+..++|+|++. .|++++.|
T Consensus       194 --------------------------------~~pii~ls~~~-------------~~~~~S~l~WhP~~aTql~~As~d  228 (1049)
T KOG0307|consen  194 --------------------------------KKPIIKLSDTP-------------GRMHCSVLAWHPDHATQLLVASGD  228 (1049)
T ss_pred             --------------------------------CCcccccccCC-------------CccceeeeeeCCCCceeeeeecCC
Confidence                                            11111111111             012466788998875 45555554


Q ss_pred             C---cEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302          258 G---TFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       258 g---~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      .   .|.+||+|.-..  ..+..|...|.++.|++.+..++.++..++.+..|+......      .      ......+
T Consensus       229 d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv------l------~~~p~~~  296 (1049)
T KOG0307|consen  229 DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV------L------GELPAQG  296 (1049)
T ss_pred             CCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE------e------eecCCCC
Confidence            3   499999987665  344589999999999998866665667776777777666310      0      0011134


Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      .++..+.|+|...-+.++  .+-|   |.|.||.+....
T Consensus       297 nW~fdv~w~pr~P~~~A~--asfd---gkI~I~sl~~~~  330 (1049)
T KOG0307|consen  297 NWCFDVQWCPRNPSVMAA--ASFD---GKISIYSLQGTD  330 (1049)
T ss_pred             cceeeeeecCCCcchhhh--heec---cceeeeeeecCC
Confidence            489999999987744333  4444   679999997655

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.56  E-value=8.8e-13  Score=126.32  Aligned_cols=239  Identities=18%  Similarity=0.263  Sum_probs=157.3

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCc----ceeeccCCcCCeeEEEEccCCCc--eEEEecCCeEEEEecc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKD----ACILTSDSQRDVKVLEWRPNGGR--SLSVGCKGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~v~~l~~sp~~~~--~la~g~~~~i~iw~~~  173 (427)
                      .|+|+.|+|... +||.|..+|+|.+||+......    .......|..+|+.+.|-.+-..  ++.++.||.|+.|+++
T Consensus       244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~  323 (555)
T KOG1587|consen  244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTD  323 (555)
T ss_pred             ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecc
Confidence            899999999765 8888899999999999887432    12334559999999999865544  8888899999999887


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-----------cc--------------c
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-----------PG--------------L  228 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-----------l~--------------~  228 (427)
                      .-..+........              .............+++++|.+....           ..              .
T Consensus       324 ~l~~P~e~~~~~~--------------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~  389 (555)
T KOG1587|consen  324 MLSLPVEGLLLES--------------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK  389 (555)
T ss_pred             ccccchhhccccc--------------ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence            3222222111100              0000001112334555565553221           00              0


Q ss_pred             Cc-eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCC-cc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeee
Q 014302          229 GT-PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT-SE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  305 (427)
Q Consensus       229 ~~-~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~-~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~  305 (427)
                      +. ....|.+.|+++.++|=+..++..+.|.+|+||...... +. .+..+...+.+++|||--..++++...+|.+.+|
T Consensus       390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iW  469 (555)
T KOG1587|consen  390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIW  469 (555)
T ss_pred             ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehh
Confidence            11 123467899999999988877744449999999877333 32 3336666799999999888888888888888888


Q ss_pred             eeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          306 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ++.....      .|+    ..........+.+.|+++|+.|++   |...   |++.+|++..
T Consensus       470 DLl~~~~------~Pv----~s~~~~~~~l~~~~~s~~g~~lav---Gd~~---G~~~~~~l~~  517 (555)
T KOG1587|consen  470 DLLQDDE------EPV----LSQKVCSPALTRVRWSPNGKLLAV---GDAN---GTTHILKLSE  517 (555)
T ss_pred             hhhcccc------CCc----ccccccccccceeecCCCCcEEEE---ecCC---CcEEEEEcCc
Confidence            8776411      111    000011225678889999999999   5555   7799999964

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.5e-12  Score=124.63  Aligned_cols=201  Identities=12%  Similarity=0.170  Sum_probs=122.0

Q ss_pred             ceeeeEEcCCCCEEEEEeC---CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-C--eEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~--~i~iw~~~~  174 (427)
                      .+.+.+|||||+.||..+.   +..+.+|++..+  ....+. ...+.+..++|+|||+.++.+... +  .|.+|+++ 
T Consensus       200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G--~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~-  275 (429)
T PRK03629        200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-  275 (429)
T ss_pred             ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--CeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECC-
Confidence            6789999999999987643   457888888765  222222 233445678999999666555432 3  46667765 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                              ++              .  ..+                           +..+...+....|+|||+.|+..
T Consensus       276 --------tg--------------~--~~~---------------------------lt~~~~~~~~~~wSPDG~~I~f~  304 (429)
T PRK03629        276 --------SG--------------Q--IRQ---------------------------VTDGRSNNTEPTWFPDSQNLAYT  304 (429)
T ss_pred             --------CC--------------C--EEE---------------------------ccCCCCCcCceEECCCCCEEEEE
Confidence                    11              0  000                           00112235567899999988855


Q ss_pred             ec-CCcEEEE--EcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302          255 KF-DGTFYLW--ETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       255 ~~-dg~v~iw--d~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      +. ++...||  |+.+++...+.........++|+|||++|++....++  .++.+++.....              ..+
T Consensus       305 s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~--------------~~L  370 (429)
T PRK03629        305 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--------------QVL  370 (429)
T ss_pred             eCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe--------------EEe
Confidence            54 4444554  6655554444434445668999999999998765543  455666544311              001


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ..........|+|||++|+.+...+.   ...+.++++......
T Consensus       371 t~~~~~~~p~~SpDG~~i~~~s~~~~---~~~l~~~~~~G~~~~  411 (429)
T PRK03629        371 TDTFLDETPSIAPNGTMVIYSSSQGM---GSVLNLVSTDGRFKA  411 (429)
T ss_pred             CCCCCCCCceECCCCCEEEEEEcCCC---ceEEEEEECCCCCeE
Confidence            11112346789999999998643332   256888888654443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.3e-12  Score=125.16  Aligned_cols=199  Identities=15%  Similarity=0.218  Sum_probs=121.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~  176 (427)
                      .+.+.+|+|||+.||..+.+   ..|.+||+..+  ....+ ....+.+.+++|+|||+.++.+.. ++...||.++..+
T Consensus       197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g--~~~~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~  273 (427)
T PRK02889        197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG--RRRVV-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG  273 (427)
T ss_pred             CcccceEcCCCCEEEEEEccCCCcEEEEEECCCC--CEEEe-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence            67899999999999887643   45889998776  23222 223345678999999966655544 4667788775110


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe-
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK-  255 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-  255 (427)
                             +              .   ..                          .+..+........|+|||++|+..+ 
T Consensus       274 -------~--------------~---~~--------------------------~lt~~~~~~~~~~wSpDG~~l~f~s~  303 (427)
T PRK02889        274 -------S--------------G---LR--------------------------RLTQSSGIDTEPFFSPDGRSIYFTSD  303 (427)
T ss_pred             -------C--------------C---cE--------------------------ECCCCCCCCcCeEEcCCCCEEEEEec
Confidence                   0              0   00                          0111122334567999999888444 


Q ss_pred             cCCcEEEEEcC--CCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeecc
Q 014302          256 FDGTFYLWETN--TWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  331 (427)
Q Consensus       256 ~dg~v~iwd~~--~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (427)
                      .++...||.+.  +++..............+|||||++|++++..++  .++++++......              .+..
T Consensus       304 ~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~--------------~lt~  369 (427)
T PRK02889        304 RGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT--------------ALTD  369 (427)
T ss_pred             CCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE--------------EccC
Confidence            45666777654  3333333223334557899999999998765543  5666666543110              0111


Q ss_pred             CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ......+.|+|||++|+.+......   ..+.+.++..
T Consensus       370 ~~~~~~p~~spdg~~l~~~~~~~g~---~~l~~~~~~g  404 (427)
T PRK02889        370 TTRDESPSFAPNGRYILYATQQGGR---SVLAAVSSDG  404 (427)
T ss_pred             CCCccCceECCCCCEEEEEEecCCC---EEEEEEECCC
Confidence            1133678999999999986443322   4576767643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.3e-12  Score=125.64  Aligned_cols=200  Identities=16%  Similarity=0.260  Sum_probs=123.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CC--eEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KG--GICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~--~i~iw~~~~  174 (427)
                      .+.+.+|+|||+.|++.+.+   ..|.+|++..+  ....+ ..+.+...+++|+|||+.++.+.. ++  .|.+|++. 
T Consensus       205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g--~~~~l-~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~-  280 (433)
T PRK04922        205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG--QRELV-ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG-  280 (433)
T ss_pred             ccccccCCCCCCEEEEEecCCCCcEEEEEECCCC--CEEEe-ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC-
Confidence            67889999999999987643   46889998766  22222 233445568899999966655443 33  47777775 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                              ++              ...                             .+..+.......+|+|||++|+..
T Consensus       281 --------~g--------------~~~-----------------------------~lt~~~~~~~~~~~spDG~~l~f~  309 (433)
T PRK04922        281 --------SR--------------QLT-----------------------------RLTNHFGIDTEPTWAPDGKSIYFT  309 (433)
T ss_pred             --------CC--------------CeE-----------------------------ECccCCCCccceEECCCCCEEEEE
Confidence                    11              100                             011112223457899999988855


Q ss_pred             e-cCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302          255 K-FDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       255 ~-~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      + .+|.  |+++|+.+++...+.........++|||||++|++....++  .+++|++......              .+
T Consensus       310 sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--------------~L  375 (433)
T PRK04922        310 SDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--------------TL  375 (433)
T ss_pred             ECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--------------EC
Confidence            4 4555  66666666554443333344567899999999998765442  4666666443110              11


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      ..+.....+.|+|||++|+.+......   +.|.++++.....
T Consensus       376 t~~~~~~~p~~spdG~~i~~~s~~~g~---~~L~~~~~~g~~~  415 (433)
T PRK04922        376 TPGSLDESPSFAPNGSMVLYATREGGR---GVLAAVSTDGRVR  415 (433)
T ss_pred             CCCCCCCCceECCCCCEEEEEEecCCc---eEEEEEECCCCce
Confidence            111133567899999999886443322   5688888865443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=2.2e-13  Score=124.78  Aligned_cols=129  Identities=17%  Similarity=0.219  Sum_probs=99.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC------CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~  174 (427)
                      .|++++|+|-...|++++.|+++++|+++..      ..++.....+|.++|.|+...+++..++..|-|++|+.|++..
T Consensus       296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~  375 (577)
T KOG0642|consen  296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP  375 (577)
T ss_pred             hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence            7889999999999999999999999999332      2345556678999999999999997777888889999998861


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                      ...+                           ...+              ........+.+|.+.++.+++|+....|+++
T Consensus       376 n~dp---------------------------~ds~--------------dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc  414 (577)
T KOG0642|consen  376 NQDP---------------------------DDSY--------------DPSVLSGTLLGHTDAVWLLALSSTKDRLLSC  414 (577)
T ss_pred             CCCc---------------------------cccc--------------Ccchhccceeccccceeeeeecccccceeee
Confidence            1000                           0000              0001122466789999999999999999999


Q ss_pred             ecCCcEEEEEcCCCCc
Q 014302          255 KFDGTFYLWETNTWTS  270 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~  270 (427)
                      +.||+||+|+......
T Consensus       415 s~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  415 SSDGTVRLWEPTEESP  430 (577)
T ss_pred             cCCceEEeeccCCcCc
Confidence            9999999998765443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.53  E-value=1.2e-12  Score=115.07  Aligned_cols=255  Identities=15%  Similarity=0.234  Sum_probs=159.6

Q ss_pred             CCCceeeeEEcC-----CCCEEEEE---eCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCCceEEEecC-Ce
Q 014302           98 PEVDLQGVSWHQ-----HKHIVAFI---SGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GG  166 (427)
Q Consensus        98 ~~~~V~~l~~sp-----~g~~lat~---~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~  166 (427)
                      .+..|+..+|..     +..+||+.   +..|...|--+..-  .....-+..+|.++|..++|+|..+..||+|++ .+
T Consensus        26 ddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~  105 (472)
T KOG0303|consen   26 DDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTK  105 (472)
T ss_pred             cceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCce
Confidence            344667777753     34566653   33344444222221  112334556899999999999999899999987 88


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP  246 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp  246 (427)
                      |.||.+..++-                         ...+    ..+               -..+.+|...|..++|+|
T Consensus       106 v~vW~IPe~~l-------------------------~~~l----tep---------------vv~L~gH~rrVg~V~wHP  141 (472)
T KOG0303|consen  106 VMVWQIPENGL-------------------------TRDL----TEP---------------VVELYGHQRRVGLVQWHP  141 (472)
T ss_pred             EEEEECCCccc-------------------------ccCc----ccc---------------eEEEeecceeEEEEeecc
Confidence            99999972111                         0000    111               113556778889999999


Q ss_pred             CCCE-EEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccc
Q 014302          247 TGDY-FFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD  325 (427)
Q Consensus       247 ~g~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  325 (427)
                      .-.. |++++.|.+|.+||+.+++......|...|.+++|+.||++|++++.+. .+++|+-.......++         
T Consensus       142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDK-kvRv~dpr~~~~v~e~---------  211 (472)
T KOG0303|consen  142 TAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDK-KVRVIDPRRGTVVSEG---------  211 (472)
T ss_pred             cchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccc-eeEEEcCCCCcEeeec---------
Confidence            8765 4488889999999999999866667999999999999999999876544 6666665554211111         


Q ss_pred             ceeecc-CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCce
Q 014302          326 IVSLTG-SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPL  404 (427)
Q Consensus       326 ~~~~~~-~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~  404 (427)
                         ..| +..-..+.|-.+|..+.+.|+..++   ..+.|||-.....-    .++..-  +..+-+-+-|.... .+-+
T Consensus       212 ---~~heG~k~~Raifl~~g~i~tTGfsr~se---Rq~aLwdp~nl~eP----~~~~el--DtSnGvl~PFyD~d-t~iv  278 (472)
T KOG0303|consen  212 ---VAHEGAKPARAIFLASGKIFTTGFSRMSE---RQIALWDPNNLEEP----IALQEL--DTSNGVLLPFYDPD-TSIV  278 (472)
T ss_pred             ---ccccCCCcceeEEeccCceeeeccccccc---cceeccCcccccCc----ceeEEe--ccCCceEEeeecCC-CCEE
Confidence               011 1134556688888866565555555   56999998653321    111111  11112223333221 2446


Q ss_pred             eEEEeeCceEEEEec
Q 014302          405 LSVCWSSGFCCTYPL  419 (427)
Q Consensus       405 l~v~~~~g~i~~~~~  419 (427)
                      ..+|=.||.|..|.+
T Consensus       279 Yl~GKGD~~IRYyEi  293 (472)
T KOG0303|consen  279 YLCGKGDSSIRYFEI  293 (472)
T ss_pred             EEEecCCcceEEEEe
Confidence            777878999998865

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.53  E-value=3.3e-12  Score=111.54  Aligned_cols=195  Identities=14%  Similarity=0.213  Sum_probs=131.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCC--CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGS--TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d--~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|-.+-|+.  .++|..+.+  +.+++.++...   ...........|.++.++.+  ++++ .-...|.|||+.     
T Consensus        48 ~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~---~~ICe~~fpt~IL~VrmNr~--RLvV-~Lee~IyIydI~-----  114 (391)
T KOG2110|consen   48 SIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK---TTICEIFFPTSILAVRMNRK--RLVV-CLEESIYIYDIK-----  114 (391)
T ss_pred             EEEEeeccc--ceeEEEecCCCceEEEEEcccC---ceEEEEecCCceEEEEEccc--eEEE-EEcccEEEEecc-----
Confidence            444455553  345544443  45788777655   22222233457999998854  3444 444559999998     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE--EEec
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF--AAKF  256 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~--~~~~  256 (427)
                                          .++++..+..-                       ..+..++.++++++.+.+|+  ....
T Consensus       115 --------------------~MklLhTI~t~-----------------------~~n~~gl~AlS~n~~n~ylAyp~s~t  151 (391)
T KOG2110|consen  115 --------------------DMKLLHTIETT-----------------------PPNPKGLCALSPNNANCYLAYPGSTT  151 (391)
T ss_pred             --------------------cceeehhhhcc-----------------------CCCccceEeeccCCCCceEEecCCCC
Confidence                                33444433321                       11334566677777777888  4445


Q ss_pred             CCcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCC
Q 014302          257 DGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQ  333 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  333 (427)
                      .|.|.|||+.+.+.... ..|++.+.+++|+++|.+||+++..+..|+++.+.+...  .+.....++            
T Consensus       152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~------------  219 (391)
T KOG2110|consen  152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV------------  219 (391)
T ss_pred             CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceee------------
Confidence            78999999988887544 499999999999999999999988887788888877532  222222223            


Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      .|.+++|+||+++|+++  ++.    ++|+||.+..
T Consensus       220 ~IySL~Fs~ds~~L~~s--S~T----eTVHiFKL~~  249 (391)
T KOG2110|consen  220 SIYSLSFSPDSQFLAAS--SNT----ETVHIFKLEK  249 (391)
T ss_pred             EEEEEEECCCCCeEEEe--cCC----CeEEEEEecc
Confidence            89999999999999985  333    6799999864

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.52  E-value=5.1e-13  Score=121.71  Aligned_cols=183  Identities=15%  Similarity=0.215  Sum_probs=113.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeecc----CCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS----DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~----~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~  175 (427)
                      ..+...=.|.+--|+.|-.-|.|++.|....  +...+..    ..+..|+++.|-|.++.++.++- .+.+.+++....
T Consensus       175 dfn~~~a~~~g~dllIGf~tGqvq~idp~~~--~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~  252 (636)
T KOG2394|consen  175 DFNSFTATPKGLDLLIGFTTGQVQLIDPINF--EVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV  252 (636)
T ss_pred             cccccccCCCCcceEEeeccCceEEecchhh--HHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc
Confidence            3344444567777888888888988665442  1211111    13468999999998777666664 488888887522


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhccc-CCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ-NGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                      .......       ....+++. . ..+..-+.+ ...++..               +....+.|..++|+|||++||+.
T Consensus       253 ~~~t~p~-------~~~~k~~~-~-f~i~t~ksk~~rNPv~~---------------w~~~~g~in~f~FS~DG~~LA~V  308 (636)
T KOG2394|consen  253 CGATAPS-------YQALKDGD-Q-FAILTSKSKKTRNPVAR---------------WHIGEGSINEFAFSPDGKYLATV  308 (636)
T ss_pred             ccCCCCc-------ccccCCCC-e-eEEeeeeccccCCccce---------------eEeccccccceeEcCCCceEEEE
Confidence            1100000       00001111 0 001100100 0122222               22234588999999999999999


Q ss_pred             ecCCcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          255 KFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      +.||.+||+|..+.+..-. ..--+...+++|||||+||++++.+| .+.+|.+.++
T Consensus       309 SqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD-LVtVwSf~er  364 (636)
T KOG2394|consen  309 SQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD-LVTVWSFEER  364 (636)
T ss_pred             ecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc-eEEEEEeccc
Confidence            9999999999987765322 24456789999999999999998888 7777777765

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=2.1e-12  Score=110.14  Aligned_cols=211  Identities=11%  Similarity=0.120  Sum_probs=137.7

Q ss_pred             CCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus        97 l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      -.++++.+++|.+ ...+++|+.||.|+++|++.+   .......|..+|+++.+++-...+++.+.|++|++||.... 
T Consensus        52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~---~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-  126 (323)
T KOG1036|consen   52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG---NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-  126 (323)
T ss_pred             ecCCceeeeeccC-CceEEEeccCceEEEEEecCC---cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-
Confidence            3456899999998 457789999999999999988   33444579999999999987767888888899999998610 


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-------------ceE----EeccCCe
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-------------TPI----RRGFGGL  239 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-------------~~~----~~~~~~v  239 (427)
                                              .....+.  ....|.++..+-+--.+++.             .++    +...-.+
T Consensus       127 ------------------------~~~~~~d--~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqt  180 (323)
T KOG1036|consen  127 ------------------------VVVGTFD--QGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQT  180 (323)
T ss_pred             ------------------------ccccccc--cCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEE
Confidence                                    0011111  11233333332211111000             001    1122458


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEEcCCCCc---c--ccc---------cCCCCeeEEEECCCCCEEEEEEcCCceeeee
Q 014302          240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS---E--PWS---------STSGFVTGATWDPEGRMILLAFAGSLTLGSI  305 (427)
Q Consensus       240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~--~~~---------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~  305 (427)
                      +++++-|++.-.++++-||.|.+=.+.....   .  .+.         ..-.+|.+++|+|--..+++|++++ .+..|
T Consensus       181 R~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG-~V~~W  259 (323)
T KOG1036|consen  181 RCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG-IVNIW  259 (323)
T ss_pred             EEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc-eEEEc
Confidence            8999999888899999999998866554421   1  111         1224789999999988899876655 55566


Q ss_pred             eeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEE
Q 014302          306 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY  351 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~  351 (427)
                      +...++.-..-|.            -...|.+++|+-||..||+++
T Consensus       260 d~~~rKrl~q~~~------------~~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  260 DLFNRKRLKQLAK------------YETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             cCcchhhhhhccC------------CCCceEEEEeccCCCeEEEEe
Confidence            6555422111111            123799999999999999954

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=1.9e-12  Score=126.79  Aligned_cols=248  Identities=13%  Similarity=0.152  Sum_probs=158.9

Q ss_pred             ceeeeEEcCC--CCEEEEEeCCCeEEEEEccCCC-Ccce-ee-cc-------CCcCCeeEEEEccCCCceEEEecCCeEE
Q 014302          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSG-KDAC-IL-TS-------DSQRDVKVLEWRPNGGRSLSVGCKGGIC  168 (427)
Q Consensus       101 ~V~~l~~sp~--g~~lat~~~d~~v~vwd~~~~~-~~~~-~~-~~-------~~~~~v~~l~~sp~~~~~la~g~~~~i~  168 (427)
                      .|+.+.+-.+  ..+|++|+.||.||||+-.... ++.. .. ..       +-.+.=.-+.|......++++|.-..|+
T Consensus      1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred             ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence            6888887443  3488999999999999754432 1111 11 11       1111124567887776777777779999


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEc-cC
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWS-PT  247 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~s-p~  247 (427)
                      |||.+.+                         .++..+...                         ....+++++-+ +.
T Consensus      1191 IWDa~~E-------------------------~~~~diP~~-------------------------s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1191 IWDAHKE-------------------------QVVADIPYG-------------------------SSTLVTALSADLVH 1220 (1387)
T ss_pred             EEecccc-------------------------eeEeecccC-------------------------CCccceeecccccC
Confidence            9999811                         111111111                         12234444432 34


Q ss_pred             CCEEEEEecCCcEEEEEcCCCCcc----ccccCCCC--eeEEEECCCCCE-EEEEEcCCceeeeeeeCCC-CCCcccccc
Q 014302          248 GDYFFAAKFDGTFYLWETNTWTSE----PWSSTSGF--VTGATWDPEGRM-ILLAFAGSLTLGSIHFASK-PPSLDAHLL  319 (427)
Q Consensus       248 g~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~--v~~v~~spdg~~-l~~~~~~~~~i~~~~~~~~-~~~~~~~~~  319 (427)
                      |+.+++|..||.|++||.+.....    .+..|...  |..+.+.+.|-. |+++ +.+|.|+.|++... ..++-..  
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg-s~~G~I~~~DlR~~~~e~~~~i-- 1297 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG-SQDGDIQLLDLRMSSKETFLTI-- 1297 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee-ccCCeEEEEecccCccccccee--
Confidence            789999999999999999876652    23367666  999999997765 6655 55557887777663 1111000  


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  399 (427)
                            ...-..++..++|..+++...+|+   |+.    +.|+||++....+-.+.+.+.+-+.. .....|++|||- 
T Consensus      1298 ------v~~~~yGs~lTal~VH~hapiiAs---Gs~----q~ikIy~~~G~~l~~~k~n~~F~~q~-~gs~scL~FHP~- 1362 (1387)
T KOG1517|consen 1298 ------VAHWEYGSALTALTVHEHAPIIAS---GSA----QLIKIYSLSGEQLNIIKYNPGFMGQR-IGSVSCLAFHPH- 1362 (1387)
T ss_pred             ------eeccccCccceeeeeccCCCeeee---cCc----ceEEEEecChhhhcccccCcccccCc-CCCcceeeecch-
Confidence                  000011235899999999999999   664    45999999876664444443333332 223679999995 


Q ss_pred             CCCceeEEEeeCceEEEEe
Q 014302          400 KQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       400 ~~g~~l~v~~~~g~i~~~~  418 (427)
                        ..+||+|..|..|.+|.
T Consensus      1363 --~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1363 --RLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             --hHhhhhccCCceEEEee
Confidence              67899999999999985

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1.4e-11  Score=118.67  Aligned_cols=181  Identities=15%  Similarity=0.226  Sum_probs=115.2

Q ss_pred             eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec---CCeEEEEeccCCCCccccccCcccccccccCCCCc
Q 014302          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (427)
Q Consensus       122 ~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (427)
                      .|.+||.+..  .... ...+...+.+++|+|||+.++.+..   +..|.+|++.         ++              
T Consensus       183 ~l~~~d~dg~--~~~~-lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~---------~g--------------  236 (435)
T PRK05137        183 RLAIMDQDGA--NVRY-LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLE---------TG--------------  236 (435)
T ss_pred             EEEEECCCCC--CcEE-EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECC---------CC--------------
Confidence            6667766544  2333 2356678999999999965555543   2568888886         11              


Q ss_pred             ceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCc--EEEEEcCCCCcccccc
Q 014302          199 RWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGT--FYLWETNTWTSEPWSS  275 (427)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~--v~iwd~~~~~~~~~~~  275 (427)
                      ...                             .+..+.+.+...+|||||+.|+ +.+.++.  |++||+.++....+..
T Consensus       237 ~~~-----------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~  287 (435)
T PRK05137        237 QRE-----------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD  287 (435)
T ss_pred             cEE-----------------------------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC
Confidence            100                             1111223455678999999876 5565655  7777888877666555


Q ss_pred             CCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302          276 TSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       276 ~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      +........|+|||+.|++++...+  .++.+++.....      ..+       ....+.+....|+|||++|+.+...
T Consensus       288 ~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~------~~l-------t~~~~~~~~~~~SpdG~~ia~~~~~  354 (435)
T PRK05137        288 SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP------RRI-------SFGGGRYSTPVWSPRGDLIAFTKQG  354 (435)
T ss_pred             CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe------EEe-------ecCCCcccCeEECCCCCEEEEEEcC
Confidence            6666778999999999998775443  566666543211      000       0112345678999999999986443


Q ss_pred             CCCcceeEEEEEEeccCceE
Q 014302          354 GDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ..+   ..|.+||+..+...
T Consensus       355 ~~~---~~i~~~d~~~~~~~  371 (435)
T PRK05137        355 GGQ---FSIGVMKPDGSGER  371 (435)
T ss_pred             CCc---eEEEEEECCCCceE
Confidence            332   45889998665543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.5e-11  Score=117.83  Aligned_cols=209  Identities=15%  Similarity=0.185  Sum_probs=125.9

Q ss_pred             eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec---CCeEEEEeccCCCCccccccCcccccccccCCCCc
Q 014302          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC---KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (427)
Q Consensus       122 ~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~---~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (427)
                      .|.+||++..  ....+. .+...+.+.+|||||+.++.+..   +..+.+|++.         ++              
T Consensus       180 ~l~~~d~dg~--~~~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~---------~G--------------  233 (429)
T PRK03629        180 ELRVSDYDGY--NQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA---------NG--------------  233 (429)
T ss_pred             eEEEEcCCCC--CCEEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC---------CC--------------
Confidence            6777777655  233332 35567999999999965554432   2457777775         11              


Q ss_pred             ceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCC--cEEEEEcCCCCcccccc
Q 014302          199 RWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWSS  275 (427)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~~  275 (427)
                      +...+.                             ...+.+..++|||||+.|+ +.+.+|  .|++||+.+++...+..
T Consensus       234 ~~~~l~-----------------------------~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~  284 (429)
T PRK03629        234 AVRQVA-----------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD  284 (429)
T ss_pred             CeEEcc-----------------------------CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC
Confidence            101111                             0112233578999999888 444455  48899998887665555


Q ss_pred             CCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302          276 TSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       276 ~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      +...+..+.|+|||+.|++++...+  .++.+++.....      ..+       ..........+|+|||++|+.....
T Consensus       285 ~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~------~~l-------t~~~~~~~~~~~SpDG~~Ia~~~~~  351 (429)
T PRK03629        285 GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP------QRI-------TWEGSQNQDADVSSDGKFMVMVSSN  351 (429)
T ss_pred             CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe------EEe-------ecCCCCccCEEECCCCCEEEEEEcc
Confidence            5567789999999999988776543  445444443211      000       0112245678999999999885433


Q ss_pred             CCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCce
Q 014302          354 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF  413 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~  413 (427)
                      ...   ..|.+||+.++....++..      ....   ..+|.|+   |..|+....+|.
T Consensus       352 ~g~---~~I~~~dl~~g~~~~Lt~~------~~~~---~p~~SpD---G~~i~~~s~~~~  396 (429)
T PRK03629        352 GGQ---QHIAKQDLATGGVQVLTDT------FLDE---TPSIAPN---GTMVIYSSSQGM  396 (429)
T ss_pred             CCC---ceEEEEECCCCCeEEeCCC------CCCC---CceECCC---CCEEEEEEcCCC
Confidence            322   4599999988876544321      1111   3446665   555666555553

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=8.7e-13  Score=120.51  Aligned_cols=230  Identities=16%  Similarity=0.168  Sum_probs=141.5

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC-ceEEEe-cCCeEEEE
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVG-CKGGICIW  170 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~la~g-~~~~i~iw  170 (427)
                      ..|.+|  -|+|+.|+.+|.+||+|+.|-.+.|||.... +....+..+|...|.++.|-|... .++++| +|..|+++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~-KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY-KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhc-ceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            445666  7999999999999999999999999998754 334456678999999999999543 455544 66889999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY  250 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~  250 (427)
                      |++....      +            +        .+ + ....+..             ....|...|..++-.|++..
T Consensus       123 dl~~~~~------~------------~--------~d-~-~~~~~~~-------------~~~cht~rVKria~~p~~Ph  161 (758)
T KOG1310|consen  123 DLDSSKE------G------------G--------MD-H-GMEETTR-------------CWSCHTDRVKRIATAPNGPH  161 (758)
T ss_pred             ecccccc------c------------c--------cc-c-Cccchhh-------------hhhhhhhhhhheecCCCCCc
Confidence            9971100      0            0        00 0 0111111             12235667778888899955


Q ss_pred             EE-EEecCCcEEEEEcCCCCc-cc----------cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc--c
Q 014302          251 FF-AAKFDGTFYLWETNTWTS-EP----------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD--A  316 (427)
Q Consensus       251 l~-~~~~dg~v~iwd~~~~~~-~~----------~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~--~  316 (427)
                      .+ ++++||+++.||++.... ..          +...--...++..+|...+++..+..+...++++.....+.+.  +
T Consensus       162 tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~  241 (758)
T KOG1310|consen  162 TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG  241 (758)
T ss_pred             eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc
Confidence            54 999999999999987432 11          1122345678899997665444444444544444322111111  1


Q ss_pred             ccc---ccccccceee-----c--------cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          317 HLL---PVDLPDIVSL-----T--------GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       317 ~~~---~~~~~~~~~~-----~--------~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      ...   |.+-.....+     .        ...-++-+.|+|+|.-|.++..+ +     .|+++|+...+.
T Consensus       242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-E-----hVYlfdvn~~~~  307 (758)
T KOG1310|consen  242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG-E-----HVYLFDVNEDKS  307 (758)
T ss_pred             cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC-e-----EEEEEeecCCCC
Confidence            000   0000001100     0        01126778999999988885543 3     399999976543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=1.3e-11  Score=119.11  Aligned_cols=274  Identities=15%  Similarity=0.164  Sum_probs=166.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccC--CCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED--SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .+++.++||+++++|+|..||.|.||.-..  .......+.+-|...|++++|+++|.++|..|.++-+.+|.+..++  
T Consensus       207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--  284 (792)
T KOG1963|consen  207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--  284 (792)
T ss_pred             cceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--
Confidence            579999999999999999999999997544  2334556667798999999999999666665566888899998221  


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc-----------------CceE---------
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL-----------------GTPI---------  232 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-----------------~~~~---------  232 (427)
                                               +.+-.+...+|..+.|+||+.+...                 ...+         
T Consensus       285 -------------------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~  339 (792)
T KOG1963|consen  285 -------------------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPS  339 (792)
T ss_pred             -------------------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCcc
Confidence                                     1122224677889999999887110                 0000         


Q ss_pred             --EeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc-----------cCCCCeeEEEECCCCCEEEEEEcC
Q 014302          233 --RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-----------STSGFVTGATWDPEGRMILLAFAG  298 (427)
Q Consensus       233 --~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-----------~~~~~v~~v~~spdg~~l~~~~~~  298 (427)
                        +...+-.+.++++|.-+.++..+..|.|.+||+.+.+... +.           .+.-.+++++.+..|+++++.--.
T Consensus       340 ~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~  419 (792)
T KOG1963|consen  340 TKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR  419 (792)
T ss_pred             ccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee
Confidence              1123446678899977788888899999999998766421 11           123357788888889998865321


Q ss_pred             C---------ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEEC-CCCC-EEEEEEecCCCcceeEEEEEEe
Q 014302          299 S---------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD-ASGE-RLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       299 ~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s-p~g~-~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      .         ..++.|.......++       .+.......|+..+...++. +... ..++   .+.|   |.++||-+
T Consensus       420 ~d~~~~~~~e~~LKFW~~n~~~kt~-------~L~T~I~~PH~~~~vat~~~~~~rs~~~vt---a~~d---g~~KiW~~  486 (792)
T KOG1963|consen  420 IDKFNFFDGEVSLKFWQYNPNSKTF-------ILNTKINNPHGNAFVATIFLNPTRSVRCVT---ASVD---GDFKIWVF  486 (792)
T ss_pred             ehhhhccCceEEEEEEEEcCCccee-------EEEEEEecCCCceeEEEEEecCcccceeEE---eccC---CeEEEEEE
Confidence            1         123333333322111       11112223344444444444 4333 4544   4445   67999998


Q ss_pred             ccCceE----EEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          368 RRTPLI----SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       368 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ..-.-.    ...-|-.+ +.-........+|.   ++|.+|+++ -++.|.+|+.
T Consensus       487 ~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs---~dGslla~s-~~~~Itiwd~  537 (792)
T KOG1963|consen  487 TDDSNIYKKSSNWTCKAI-GSYHKTPITALCFS---QDGSLLAVS-FDDTITIWDY  537 (792)
T ss_pred             ecccccCcCccceEEeee-eccccCcccchhhc---CCCcEEEEe-cCCEEEEecC
Confidence            442211    01111111 11001111223343   458999999 7889999985

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=3.7e-12  Score=111.85  Aligned_cols=252  Identities=11%  Similarity=0.087  Sum_probs=163.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC----CCccee-eccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS----GKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~----~~~~~~-~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~  174 (427)
                      .|++|.|+.++++||+|+.|..++||+++..    ..++.. ....|...|.|++|.... ..|.+|. +++|.+-|+. 
T Consensus        58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~~VI~HDiE-  135 (609)
T KOG4227|consen   58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWGTVIKHDIE-  135 (609)
T ss_pred             ccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCcceeEeeecc-
Confidence            7999999999999999999999999998764    112222 334477899999999776 5666655 5999999997 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                              +.                ..+..+...                        ...+.|+.+..+|..+.|++.
T Consensus       136 --------t~----------------qsi~V~~~~------------------------~~~~~VY~m~~~P~DN~~~~~  167 (609)
T KOG4227|consen  136 --------TK----------------QSIYVANEN------------------------NNRGDVYHMDQHPTDNTLIVV  167 (609)
T ss_pred             --------cc----------------eeeeeeccc------------------------CcccceeecccCCCCceEEEE
Confidence                    11                111111100                        123579999999999999999


Q ss_pred             ecCCcEEEEEcCCCCc--cccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeec
Q 014302          255 KFDGTFYLWETNTWTS--EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  330 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~--~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (427)
                      +.++.|.+||++....  ..+.  .......++.|+|.-..|+...+..+-..+|++......+-.......++.     
T Consensus       168 t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~-----  242 (609)
T KOG4227|consen  168 TRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQ-----  242 (609)
T ss_pred             ecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcc-----
Confidence            9999999999987663  2222  444566788999988777666555556666666554221100000000110     


Q ss_pred             cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe----eeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302          331 GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS----LIGFIRGPGDNPKPVAFSFHDKFKQGPLLS  406 (427)
Q Consensus       331 ~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~  406 (427)
                      ....--++.|+|+|..|.+.-.+      ..-.+||+.+..++.+.    |.|+.+...    ..+++|..++    .++
T Consensus       243 ~~~~~M~~~~~~~G~Q~msiRR~------~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T----~KS~~F~~D~----~v~  308 (609)
T KOG4227|consen  243 ENTEWMGSLWSPSGNQFMSIRRG------KCPLYFDFISQRCFVLKSDHNPNGYCNIKT----IKSMTFIDDY----TVA  308 (609)
T ss_pred             cchhhhheeeCCCCCeehhhhcc------CCCEEeeeecccceeEeccCCCCcceeeee----eeeeeeecce----eee
Confidence            00122467899999988774222      23557898876665443    345554322    2256676553    378


Q ss_pred             EEeeCceEEEEeccc
Q 014302          407 VCWSSGFCCTYPLIF  421 (427)
Q Consensus       407 v~~~~g~i~~~~~~~  421 (427)
                      .|..+=.|++|.+.-
T Consensus       309 tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  309 TGSDHWGIHIWKLPR  323 (609)
T ss_pred             ccCcccceEEEecCC
Confidence            887888899988753

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.48  E-value=3.4e-12  Score=114.22  Aligned_cols=239  Identities=16%  Similarity=0.173  Sum_probs=157.7

Q ss_pred             cCCcCCeeEEEEccCCC-ceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee
Q 014302          140 SDSQRDVKVLEWRPNGG-RSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (427)
Q Consensus       140 ~~~~~~v~~l~~sp~~~-~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (427)
                      .-+.+.|++++|+|... .++|+|.. |.|-+|++...                     ......+..+.. +..+|.++
T Consensus       183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~---------------------~~d~d~v~~f~~-hs~~Vs~l  240 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQ---------------------EKDKDGVYLFTP-HSGPVSGL  240 (498)
T ss_pred             EecccceEEEEecccCcceEEEEccCCCcEEEEecCCC---------------------CCccCceEEecc-CCccccce
Confidence            34778999999999886 68888877 88999999510                     001112222333 38889999


Q ss_pred             EeCCCCCC--cc---cCc-------------eEEe--ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc--ccccc
Q 014302          218 SWGPDGRF--PG---LGT-------------PIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSS  275 (427)
Q Consensus       218 ~~spdg~~--l~---~~~-------------~~~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~  275 (427)
                      .|+|...-  +.   .|.             ++..  ....+..+.|+.+...++.+..=|.+.+||+++.+.  ..+.-
T Consensus       241 ~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l  320 (498)
T KOG4328|consen  241 KFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL  320 (498)
T ss_pred             EecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence            99985432  11   010             0111  223456677888888888887778999999998877  34557


Q ss_pred             CCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCC
Q 014302          276 TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD  355 (427)
Q Consensus       276 ~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~  355 (427)
                      |+..|.+++++|...+++.+++.+.+.++|++......-.    |    -...+.|.-.|.+..|||+|-.|+++   +.
T Consensus       321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----p----~lst~~HrrsV~sAyFSPs~gtl~TT---~~  389 (498)
T KOG4328|consen  321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----P----FLSTLPHRRSVNSAYFSPSGGTLLTT---CQ  389 (498)
T ss_pred             hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----c----ceecccccceeeeeEEcCCCCceEee---cc
Confidence            8889999999998887777777777888998877422111    1    13344556689999999998888874   44


Q ss_pred             CcceeEEEEEEeccCceEEEeeeeeeeCC---CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          356 DIYKGLIAIYDARRTPLISLSLIGFIRGP---GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       356 d~~~g~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      |   ..|+|||..--. -...|.+.|.-.   +....+..-.|+|+   ..++.||----.|.+|+
T Consensus       390 D---~~IRv~dss~~s-a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~---~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  390 D---NEIRVFDSSCIS-AKDEPLGTIPHNNRTGRWLTPFKAAWDPD---YNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             C---CceEEeeccccc-ccCCccceeeccCcccccccchhheeCCC---ccEEEEeccCcceeEEc
Confidence            5   349999984100 012234444432   12234556678885   45777776666666664

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.48  E-value=1.7e-12  Score=114.52  Aligned_cols=74  Identities=12%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEcc--------C------CCCcceeeccCCcCCeeEEEEccCCCceEEEecCCe
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE--------D------SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG  166 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~--------~------~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~  166 (427)
                      .|+++.|+|+|.+||+|+.+|.|.+|...        +      ..+.......+|...|..++|+|++..+++.+.++.
T Consensus        67 aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns  146 (434)
T KOG1009|consen   67 AVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNS  146 (434)
T ss_pred             eeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccce
Confidence            89999999999999999999999999876        1      112333445579999999999999954555556799


Q ss_pred             EEEEeccC
Q 014302          167 ICIWAPSY  174 (427)
Q Consensus       167 i~iw~~~~  174 (427)
                      +++||+..
T Consensus       147 ~~l~Dv~~  154 (434)
T KOG1009|consen  147 VRLWDVHA  154 (434)
T ss_pred             EEEEEecc
Confidence            99999973

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=2.6e-11  Score=116.25  Aligned_cols=183  Identities=18%  Similarity=0.216  Sum_probs=107.9

Q ss_pred             eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCCccccccCcccccccccCCCCc
Q 014302          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (427)
Q Consensus       122 ~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (427)
                      .+.++|.+..  ....+ ..+...+.+.+|+|||+.++.+..+   ..|.+|++.         ++              
T Consensus       177 ~L~~~D~dG~--~~~~l-~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~---------~g--------------  230 (427)
T PRK02889        177 QLQISDADGQ--NAQSA-LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLA---------TG--------------  230 (427)
T ss_pred             EEEEECCCCC--CceEe-ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECC---------CC--------------
Confidence            4555554332  22222 3456789999999999555544432   347788876         11              


Q ss_pred             ceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEc--CCCCcccccc
Q 014302          199 RWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWET--NTWTSEPWSS  275 (427)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~--~~~~~~~~~~  275 (427)
                      ....                             +....+.+...+|||||+.|+ +.+.++...||.+  ..+....+..
T Consensus       231 ~~~~-----------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~  281 (427)
T PRK02889        231 RRRV-----------------------------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ  281 (427)
T ss_pred             CEEE-----------------------------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC
Confidence            1010                             111122345678999999887 5677887666654  4444444444


Q ss_pred             CCCCeeEEEECCCCCEEEEEEcCCce--eeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302          276 TSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       276 ~~~~v~~v~~spdg~~l~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      +......+.|+|||+.|++++..++.  ++.+++.....      ..+      . ..+......+|||||++||.+...
T Consensus       282 ~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~------~~l------t-~~g~~~~~~~~SpDG~~Ia~~s~~  348 (427)
T PRK02889        282 SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA------QRV------T-FTGSYNTSPRISPDGKLLAYISRV  348 (427)
T ss_pred             CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce------EEE------e-cCCCCcCceEECCCCCEEEEEEcc
Confidence            55556788999999999987655443  33333332210      000      0 011133467899999999975433


Q ss_pred             CCCcceeEEEEEEeccCceEEE
Q 014302          354 GDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      +..   ..|.+||+.++....+
T Consensus       349 ~g~---~~I~v~d~~~g~~~~l  367 (427)
T PRK02889        349 GGA---FKLYVQDLATGQVTAL  367 (427)
T ss_pred             CCc---EEEEEEECCCCCeEEc
Confidence            222   4699999988776543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=5.4e-12  Score=109.10  Aligned_cols=173  Identities=13%  Similarity=0.144  Sum_probs=115.9

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC-CCc-eEEEecCCeEEEEeccCCCCccccccCccccc
Q 014302          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN-GGR-SLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (427)
Q Consensus       112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~-~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~  189 (427)
                      ..+|++-.+|.|++||..++  .......++...++.++|... +.. +++++.||+|++||+....+......+     
T Consensus        41 ~~vav~lSngsv~lyd~~tg--~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-----  113 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTG--QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-----  113 (376)
T ss_pred             eeEEEEecCCeEEEEeccch--hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-----
Confidence            57999999999999999886  455556678888889999863 333 556667799999999732221111111     


Q ss_pred             ccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------------eEEeccCCeEEEEEcc
Q 014302          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------------PIRRGFGGLSILKWSP  246 (427)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------------~~~~~~~~v~~~~~sp  246 (427)
                                        .+...+..+++-+..++.+++|.                       ....|...|++++|+|
T Consensus       114 ------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP  175 (376)
T KOG1188|consen  114 ------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP  175 (376)
T ss_pred             ------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence                              11112333444433333333332                       1234889999999999


Q ss_pred             CCC-EEEEEecCCcEEEEEcCCCCc----cccccCCCCeeEEEECCCCC-EEEEEEcCCceeeeeeeCCC
Q 014302          247 TGD-YFFAAKFDGTFYLWETNTWTS----EPWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       247 ~g~-~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~v~~v~~spdg~-~l~~~~~~~~~i~~~~~~~~  310 (427)
                      ... .|++|+.||.|.|||+.....    .....+...|..+.|..++. .|.+ -.......+|++.+.
T Consensus       176 ~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~c-lTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  176 SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMC-LTHMETFAIYELEDG  244 (376)
T ss_pred             CCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEE-EEccCceeEEEccCC
Confidence            775 566999999999999987654    23347888899999999882 3433 344446777777665

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=7e-12  Score=109.20  Aligned_cols=223  Identities=17%  Similarity=0.290  Sum_probs=143.3

Q ss_pred             CcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC
Q 014302          142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (427)
Q Consensus       142 ~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (427)
                      ....+..++|++.--.+.+.+.|..|++|+-..                          .+...++......|++++|.|
T Consensus        97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss--------------------------t~pt~Lks~sQrnvtclawRP  150 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS--------------------------TCPTKLKSVSQRNVTCLAWRP  150 (445)
T ss_pred             hhcceeeEeechhhhhhhhhccCcEEEEeccCC--------------------------CCCceecchhhcceeEEEecc
Confidence            345688899998653344445669999998761                          223345555577899999999


Q ss_pred             CCCC-cc-----------------cC-----------ceEEe-ccCCeEEEEEccCCCEEEEEe-cCCcEEEEEcCCCCc
Q 014302          222 DGRF-PG-----------------LG-----------TPIRR-GFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTS  270 (427)
Q Consensus       222 dg~~-l~-----------------~~-----------~~~~~-~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~  270 (427)
                      .+.. ++                 .+           +.++. ....|++|+|.+||..+++++ .|..|.|||..++.+
T Consensus       151 lsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~  230 (445)
T KOG2139|consen  151 LSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK  230 (445)
T ss_pred             CCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc
Confidence            6543 11                 11           11211 225799999999999999665 467899999999998


Q ss_pred             cccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEE
Q 014302          271 EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV  349 (427)
Q Consensus       271 ~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~  349 (427)
                      ..+. ...+.+.-+.|||||.+|++++-+.    ...+|+........         .-..+++.|+..+|+|+|++|..
T Consensus       231 ~pL~~~glgg~slLkwSPdgd~lfaAt~da----vfrlw~e~q~wt~e---------rw~lgsgrvqtacWspcGsfLLf  297 (445)
T KOG2139|consen  231 IPLIPKGLGGFSLLKWSPDGDVLFAATCDA----VFRLWQENQSWTKE---------RWILGSGRVQTACWSPCGSFLLF  297 (445)
T ss_pred             ccccccCCCceeeEEEcCCCCEEEEecccc----eeeeehhcccceec---------ceeccCCceeeeeecCCCCEEEE
Confidence            7766 5667788999999999998876554    55555332111111         11234458999999999999988


Q ss_pred             EEecCCCcceeEEEEEEeccC--ceE--------E------EeeeeeeeCC-CCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302          350 SYKGGDDIYKGLIAIYDARRT--PLI--------S------LSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       350 ~~~~~~d~~~g~i~vwd~~~~--~~~--------~------~~~~~~~~~~-~~~~~~~~~~f~~~~~~g~~l~v~~~~g  412 (427)
                      ++.++       =+||.+...  ...        .      +..+....+. .....+.+++|.|.   |.-|+|-+..+
T Consensus       298 ~~sgs-------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps---GeyLav~fKg~  367 (445)
T KOG2139|consen  298 ACSGS-------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS---GEYLAVIFKGQ  367 (445)
T ss_pred             EEcCC-------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC---CCEEEEEEcCC
Confidence            76665       345554321  111        0      0111111111 11234669999996   77799888766


Q ss_pred             e
Q 014302          413 F  413 (427)
Q Consensus       413 ~  413 (427)
                      .
T Consensus       368 ~  368 (445)
T KOG2139|consen  368 S  368 (445)
T ss_pred             c
Confidence            4

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.5e-11  Score=118.35  Aligned_cols=184  Identities=17%  Similarity=0.243  Sum_probs=114.7

Q ss_pred             CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCCccccccCcccccccccCCCC
Q 014302          121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPG  197 (427)
Q Consensus       121 ~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (427)
                      .+|.+||.+..  ....+ ..+...+.+++|+|||+.++.+...   ..+.+|++.         ++             
T Consensus       184 ~~l~i~D~~g~--~~~~l-t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~---------~g-------------  238 (433)
T PRK04922        184 YALQVADSDGY--NPQTI-LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLA---------TG-------------  238 (433)
T ss_pred             EEEEEECCCCC--CceEe-ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECC---------CC-------------
Confidence            35778887644  23333 3456679999999999655555433   357788876         11             


Q ss_pred             cceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCC--cEEEEEcCCCCccccc
Q 014302          198 TRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWS  274 (427)
Q Consensus       198 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~  274 (427)
                       ....+                             ....+....++|+|||+.|+ +.+.+|  .|++||+.+++...+.
T Consensus       239 -~~~~l-----------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt  288 (433)
T PRK04922        239 -QRELV-----------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLT  288 (433)
T ss_pred             -CEEEe-----------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECc
Confidence             10100                             00112234678999998876 555555  5999999888766555


Q ss_pred             cCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEe
Q 014302          275 STSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK  352 (427)
Q Consensus       275 ~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~  352 (427)
                      .+......++|+|||+.|++++...+  .++.+++.....      ..+       ...+.....++|||||++|+.+..
T Consensus       289 ~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~------~~l-------t~~g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        289 NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA------ERL-------TFQGNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe------EEe-------ecCCCCccCEEECCCCCEEEEEEC
Confidence            55555678999999999998875544  456555543211      000       001123456899999999998533


Q ss_pred             cCCCcceeEEEEEEeccCceEEE
Q 014302          353 GGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       353 ~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      .+..   ..|.+||+.++....+
T Consensus       356 ~~~~---~~I~v~d~~~g~~~~L  375 (433)
T PRK04922        356 SGGQ---YRIAVMDLSTGSVRTL  375 (433)
T ss_pred             CCCc---eeEEEEECCCCCeEEC
Confidence            2222   4699999988776533

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.46  E-value=6.1e-12  Score=106.47  Aligned_cols=120  Identities=18%  Similarity=0.285  Sum_probs=81.2

Q ss_pred             CCeEEEEEccCCCEEE--EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC--ceeeeeeeCCCCC
Q 014302          237 GGLSILKWSPTGDYFF--AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPP  312 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~--~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~--~~i~~~~~~~~~~  312 (427)
                      +.|.+++|+|+|+.|+  .|..++.|.+||++......  -....+..+.|||+|++|++++.++  +.+..|++.+...
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~--~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~  137 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFS--FGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK  137 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEe--ecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence            4699999999999877  34567899999997322222  2356778999999999999987543  4566666664311


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      .             ... .+..+..++|||||++|+++.....-+.+..++||+.....+
T Consensus       138 i-------------~~~-~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l  183 (194)
T PF08662_consen  138 I-------------STF-EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL  183 (194)
T ss_pred             e-------------ecc-ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence            0             011 122578999999999999975431111124599999965443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.45  E-value=5.2e-11  Score=114.30  Aligned_cols=267  Identities=19%  Similarity=0.296  Sum_probs=160.7

Q ss_pred             ceeeeEEcCCCC--E-EEEE-----------------eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEE
Q 014302          101 DLQGVSWHQHKH--I-VAFI-----------------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLS  160 (427)
Q Consensus       101 ~V~~l~~sp~g~--~-lat~-----------------~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la  160 (427)
                      .++.+.|+|++.  . .++.                 ..++.+.||++.....  ......-...|+++.|+|....+++
T Consensus       182 ~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~--Pe~~~~~~s~v~~~~f~p~~p~ll~  259 (555)
T KOG1587|consen  182 QVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNT--PELVLESPSEVTCLKFCPFDPNLLA  259 (555)
T ss_pred             ceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCCC--ceEEEecCCceeEEEeccCCcceEE
Confidence            688899999876  1 1111                 1224688999988733  2233345678999999999999999


Q ss_pred             EecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC------------CCCCcc
Q 014302          161 VGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP------------DGRFPG  227 (427)
Q Consensus       161 ~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------------dg~~l~  227 (427)
                      +|.. |.|.+||+...+.+..                    ..+......+..+++.+.|..            ||++..
T Consensus       260 gG~y~GqV~lWD~~~~~~~~~--------------------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~  319 (555)
T KOG1587|consen  260 GGCYNGQVVLWDLRKGSDTPP--------------------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS  319 (555)
T ss_pred             eeccCceEEEEEccCCCCCCC--------------------cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence            9987 9999999984333110                    011111222244444444432            443310


Q ss_pred             ----------cC---ceEE------eccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCc---------cccccCCC
Q 014302          228 ----------LG---TPIR------RGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTS---------EPWSSTSG  278 (427)
Q Consensus       228 ----------~~---~~~~------~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~---------~~~~~~~~  278 (427)
                                .+   ....      ....++++++|.+... .+++|+++|.|.-=+....+.         .....|.+
T Consensus       320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence                      00   0000      1235688999988665 566999999987733322221         13337889


Q ss_pred             CeeEEEECCCCCEEEEEEcCCceeeeeeeC-CCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCc
Q 014302          279 FVTGATWDPEGRMILLAFAGSLTLGSIHFA-SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI  357 (427)
Q Consensus       279 ~v~~v~~spdg~~l~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~  357 (427)
                      .|.++.++|-+..++.++.+. .+++|.-. ...+.            .........|++++|||...-+..+  +..+ 
T Consensus       400 ~v~~v~~nPF~~k~fls~gDW-~vriWs~~~~~~Pl------------~~~~~~~~~v~~vaWSptrpavF~~--~d~~-  463 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVGDW-TVRIWSEDVIASPL------------LSLDSSPDYVTDVAWSPTRPAVFAT--VDGD-  463 (555)
T ss_pred             ceEeeecCCCccceeeeeccc-eeEeccccCCCCcc------------hhhhhccceeeeeEEcCcCceEEEE--EcCC-
Confidence            999999999888777665533 44444333 11111            1111122258999999987766665  4545 


Q ss_pred             ceeEEEEEEeccCce---EEEeeeeeeeCCCCCCCce-eEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          358 YKGLIAIYDARRTPL---ISLSLIGFIRGPGDNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       358 ~~g~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                        |.|.+||+.....   .....+        . .++ ++.|.+   .|.+|++|-..|+|++|.+
T Consensus       464 --G~l~iWDLl~~~~~Pv~s~~~~--------~-~~l~~~~~s~---~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  464 --GNLDIWDLLQDDEEPVLSQKVC--------S-PALTRVRWSP---NGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             --CceehhhhhccccCCccccccc--------c-cccceeecCC---CCcEEEEecCCCcEEEEEc
Confidence              6799999965332   211111        1 122 333333   4899999999999999987

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=3.4e-11  Score=99.53  Aligned_cols=217  Identities=12%  Similarity=0.140  Sum_probs=140.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--------CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~  172 (427)
                      .|.+-+|+|.+++|+.|..+|+|.+..++..        ++.......+|.++|+.++|. |  .+|.++++|.|+=|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d--~~Lls~gdG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-D--DFLLSGGDGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-h--hheeeccCceEEEeee
Confidence            3556689999999999999999999887653        233334446799999999998 3  4667777799997776


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEe---ccCCeEEEEEccCCC
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRR---GFGGLSILKWSPTGD  249 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~---~~~~v~~~~~sp~g~  249 (427)
                      +...+..                     .+....+-                    ..+++.   ....|.+|...|..+
T Consensus        89 ~E~~es~---------------------~~K~lwe~--------------------~~P~~~~~~evPeINam~ldP~en  127 (325)
T KOG0649|consen   89 NEEEESL---------------------ATKRLWEV--------------------KIPMQVDAVEVPEINAMWLDPSEN  127 (325)
T ss_pred             hhhhhhc---------------------cchhhhhh--------------------cCccccCcccCCccceeEeccCCC
Confidence            5100000                     00000000                    001110   124688899999888


Q ss_pred             EEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccccccccc
Q 014302          250 YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDI  326 (427)
Q Consensus       250 ~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~  326 (427)
                      .++.++.|+.++-||+++++. ..+.+|+..+.++.--.....++++ .+++++++|+....+.  .++.    .+.+..
T Consensus       128 Si~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG-~EDGtvRvWd~kt~k~v~~ie~----yk~~~~  202 (325)
T KOG0649|consen  128 SILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSG-AEDGTVRVWDTKTQKHVSMIEP----YKNPNL  202 (325)
T ss_pred             cEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeec-CCCccEEEEeccccceeEEecc----ccChhh
Confidence            888777899999999999997 5566999999999984434445555 5566888888776432  1111    111112


Q ss_pred             eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      .....+..|-+++-  +..+|++   |+.    ..+.+|++++.++..+
T Consensus       203 lRp~~g~wigala~--~edWlvC---GgG----p~lslwhLrsse~t~v  242 (325)
T KOG0649|consen  203 LRPDWGKWIGALAV--NEDWLVC---GGG----PKLSLWHLRSSESTCV  242 (325)
T ss_pred             cCcccCceeEEEec--cCceEEe---cCC----CceeEEeccCCCceEE
Confidence            22223445666655  4568987   444    3499999988766544

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=5.8e-11  Score=101.42  Aligned_cols=245  Identities=15%  Similarity=0.253  Sum_probs=150.4

Q ss_pred             eccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee
Q 014302          138 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (427)
Q Consensus       138 ~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (427)
                      +..+|.+-|.++.|.+.|.++.+++.|.+++|||.+.                     ..+.|.+....+.| .+.|-.+
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~---------------------~s~~W~~Ts~Wrah-~~Si~rV   65 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS---------------------DSGTWSCTSSWRAH-DGSIWRV   65 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccC---------------------CCCceEEeeeEEec-CCcEEEE
Confidence            4457888899999999996666666789999999751                     13366666667776 7777777


Q ss_pred             EeCC--CCCCcccCc--------------------------eEEeccCCeEEEEEccC--CCEEEEEecCCcEEEEEcCC
Q 014302          218 SWGP--DGRFPGLGT--------------------------PIRRGFGGLSILKWSPT--GDYFFAAKFDGTFYLWETNT  267 (427)
Q Consensus       218 ~~sp--dg~~l~~~~--------------------------~~~~~~~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~  267 (427)
                      .|.+  -|+.+++..                          .+......|+.++|.|.  |-.||+++.||.+|||+...
T Consensus        66 ~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~d  145 (361)
T KOG2445|consen   66 VWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPD  145 (361)
T ss_pred             EecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCC
Confidence            7754  455544221                          12224578999999985  45788999999999998643


Q ss_pred             CCc-ccc-------------ccCCCCeeEEEECCC---CCEEEEEEcCC----ceeeeeeeCCCCCCccccccccccccc
Q 014302          268 WTS-EPW-------------SSTSGFVTGATWDPE---GRMILLAFAGS----LTLGSIHFASKPPSLDAHLLPVDLPDI  326 (427)
Q Consensus       268 ~~~-~~~-------------~~~~~~v~~v~~spd---g~~l~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      ... ..+             ..+.....++.|+|.   ..+|+.++.++    +..+++...+....+.   .   .  .
T Consensus       146 p~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~---k---v--a  217 (361)
T KOG2445|consen  146 PMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWL---K---V--A  217 (361)
T ss_pred             ccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceee---e---e--h
Confidence            321 111             136677889999973   35777776653    1334444333210100   0   0  0


Q ss_pred             eeeccCCceeEEEECCC----CCEEEEEEecCCCcceeEEEEEEeccCce-E-----------EEeeeeeeeCCCCCC-C
Q 014302          327 VSLTGSQGIEKIAWDAS----GERLAVSYKGGDDIYKGLIAIYDARRTPL-I-----------SLSLIGFIRGPGDNP-K  389 (427)
Q Consensus       327 ~~~~~~~~i~~v~~sp~----g~~La~~~~~~~d~~~g~i~vwd~~~~~~-~-----------~~~~~~~~~~~~~~~-~  389 (427)
                      ....+..+|++++|.|+    -..||+   ++.|   | |+||.++.... +           .-.+.-.+....++. .
T Consensus       218 ~L~d~~dpI~di~wAPn~Gr~y~~lAv---A~kD---g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~  290 (361)
T KOG2445|consen  218 ELPDHTDPIRDISWAPNIGRSYHLLAV---ATKD---G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE  290 (361)
T ss_pred             hcCCCCCcceeeeeccccCCceeeEEE---eecC---c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence            01134458999999986    346777   5655   5 99999974210 0           000111111111111 2


Q ss_pred             ceeEEeccCCCCCceeEEEeeCceEEEEecccc
Q 014302          390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  422 (427)
Q Consensus       390 ~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~  422 (427)
                      +-.+.|.=   -|.+|+...+||.+.+|-.-|.
T Consensus       291 VWrv~wNm---tGtiLsStGdDG~VRLWkany~  320 (361)
T KOG2445|consen  291 VWRVRWNM---TGTILSSTGDDGCVRLWKANYN  320 (361)
T ss_pred             eEEEEEee---eeeEEeecCCCceeeehhhhhh
Confidence            33444543   3778888889999999986664

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.41  E-value=4.3e-11  Score=115.09  Aligned_cols=198  Identities=16%  Similarity=0.286  Sum_probs=122.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-C--eEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~--~i~iw~~~~  174 (427)
                      .+...+|+|||++||.+..+   ..|++|++..+  .... ...+...+.+++|+|||+.++.+... +  .|.+|++. 
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g--~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~-  266 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG--QREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD-  266 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC--CEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC-
Confidence            47888999999999987654   47899998766  2222 22345567789999999666655433 3  46666665 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                              ++              .  ..+ +.                          .+........|+|||++|+..
T Consensus       267 --------~~--------------~--~~~-l~--------------------------~~~~~~~~~~~s~dg~~l~~~  295 (417)
T TIGR02800       267 --------GK--------------Q--LTR-LT--------------------------NGPGIDTEPSWSPDGKSIAFT  295 (417)
T ss_pred             --------CC--------------C--EEE-CC--------------------------CCCCCCCCEEECCCCCEEEEE
Confidence                    11              0  000 00                          011122345789999988754


Q ss_pred             e-cCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302          255 K-FDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       255 ~-~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      + .++  .|+++|+.+++...+..+......+.|+|+|++++++..+.+  .++.+++......              .+
T Consensus       296 s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~--------------~l  361 (417)
T TIGR02800       296 SDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER--------------VL  361 (417)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE--------------Ec
Confidence            4 333  477778776665444445566778999999999998766543  4566665542110              01


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      .........+|+|||++|+........   ..+++.+....
T Consensus       362 ~~~~~~~~p~~spdg~~l~~~~~~~~~---~~l~~~~~~g~  399 (417)
T TIGR02800       362 TDTGLDESPSFAPNGRMILYATTRGGR---GVLGLVSTDGR  399 (417)
T ss_pred             cCCCCCCCceECCCCCEEEEEEeCCCc---EEEEEEECCCc
Confidence            111123456899999999886554432   45777665443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=4.6e-11  Score=114.94  Aligned_cols=199  Identities=15%  Similarity=0.158  Sum_probs=113.7

Q ss_pred             ceeeeEEcCCCCEEEEEeC-CC--eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-Ce--EEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISG-ST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GG--ICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~--i~iw~~~~  174 (427)
                      .+.+.+|||||++|+..+. ++  .|.+||+..+  ....+. ...+....++|+|||+.++.+... +.  |.+|+++ 
T Consensus       219 ~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg--~~~~lt-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~-  294 (448)
T PRK04792        219 PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ--VREKVT-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA-  294 (448)
T ss_pred             cccCceECCCCCEEEEEEecCCCcEEEEEECCCC--CeEEec-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC-
Confidence            5678899999999987654 33  5777777665  222222 222344578999999666555443 54  4444543 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE-
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA-  253 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~-  253 (427)
                              ++              ...                             .+..+.......+|+|||++|+. 
T Consensus       295 --------tg--------------~~~-----------------------------~lt~~~~~~~~p~wSpDG~~I~f~  323 (448)
T PRK04792        295 --------TK--------------ALT-----------------------------RITRHRAIDTEPSWHPDGKSLIFT  323 (448)
T ss_pred             --------CC--------------CeE-----------------------------ECccCCCCccceEECCCCCEEEEE
Confidence                    11              000                             01111123445789999998874 


Q ss_pred             EecCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302          254 AKFDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       254 ~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      +..++.  |+++|+.+++..............+|+|||++|++.....+  .|+.+++.......      +        
T Consensus       324 s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~------l--------  389 (448)
T PRK04792        324 SERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV------L--------  389 (448)
T ss_pred             ECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE------c--------
Confidence            433444  66667766655433323333456799999999998766554  34445544431100      0        


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      ..........|+|||++|+.+......   +.|++++.....
T Consensus       390 t~~~~d~~ps~spdG~~I~~~~~~~g~---~~l~~~~~~G~~  428 (448)
T PRK04792        390 TSTRLDESPSVAPNGTMVIYSTTYQGK---QVLAAVSIDGRF  428 (448)
T ss_pred             cCCCCCCCceECCCCCEEEEEEecCCc---eEEEEEECCCCc
Confidence            000112345799999999885433222   558888875443

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.1e-10  Score=112.58  Aligned_cols=200  Identities=13%  Similarity=0.184  Sum_probs=118.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-C--eEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~--~i~iw~~~~  174 (427)
                      .+...+|+|||++||..+.+   ..|.+|++..+  ....+ ....+.+..++|+|||+.++.+... +  .|.+|+++ 
T Consensus       200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g--~~~~l-~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~-  275 (430)
T PRK00178        200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG--RREQI-TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA-  275 (430)
T ss_pred             ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC--CEEEc-cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC-
Confidence            57888999999999877644   36788888766  22222 2233445678999999666544433 3  35556665 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                              ++              ....   +                          ..+........|+|||+.|+..
T Consensus       276 --------~~--------------~~~~---l--------------------------t~~~~~~~~~~~spDg~~i~f~  304 (430)
T PRK00178        276 --------SR--------------QLSR---V--------------------------TNHPAIDTEPFWGKDGRTLYFT  304 (430)
T ss_pred             --------CC--------------CeEE---c--------------------------ccCCCCcCCeEECCCCCEEEEE
Confidence                    11              1000   0                          0111223456799999988744


Q ss_pred             e-cCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceee
Q 014302          255 K-FDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       255 ~-~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      + .++  .|+++|+.+++...+...........|+|||++|++....++  .++.+++......              .+
T Consensus       305 s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--------------~l  370 (430)
T PRK00178        305 SDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--------------IL  370 (430)
T ss_pred             ECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--------------Ec
Confidence            4 344  477777776665443322334456789999999998765543  3555555443110              00


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      ..........|+|||++|+.+......   ..|.++++.....
T Consensus       371 t~~~~~~~p~~spdg~~i~~~~~~~g~---~~l~~~~~~g~~~  410 (430)
T PRK00178        371 TDTSLDESPSVAPNGTMLIYATRQQGR---GVLMLVSINGRVR  410 (430)
T ss_pred             cCCCCCCCceECCCCCEEEEEEecCCc---eEEEEEECCCCce
Confidence            111122356899999999886443322   5588888765443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.39  E-value=1.1e-09  Score=102.16  Aligned_cols=267  Identities=17%  Similarity=0.247  Sum_probs=157.4

Q ss_pred             ceeeeEEcCCCCEEEEEeC----CCeEEEEEccCCCCcceee--ccCCcCCeeEEEEccCCCceEEEec-CCeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISG----STQVIVRDYEDSGKDACIL--TSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~----d~~v~vwd~~~~~~~~~~~--~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~  173 (427)
                      ...-++++|++++|.+...    ++.|..|.++........+  ..........++.+|++..++++.. .+.+.+++++
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~  117 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD  117 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence            4567889999998888766    5799999888751112111  1113445678999999944444443 4889999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                      .++...                     .....+...      ..  .|+-        .+.......++.++|+|+++++
T Consensus       118 ~~g~l~---------------------~~~~~~~~~------g~--g~~~--------~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen  118 DDGSLG---------------------EVVQTVRHE------GS--GPNP--------DRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             TTSEEE---------------------EEEEEEESE------EE--ESST--------TTTSSTCEEEEEE-TTSSEEEE
T ss_pred             CCcccc---------------------eeeeecccC------CC--CCcc--------cccccccceeEEECCCCCEEEE
Confidence            221100                     000000000      00  0100        0112345778999999999986


Q ss_pred             Ee-cCCcEEEEEcCCCCc--cc----cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc
Q 014302          254 AK-FDGTFYLWETNTWTS--EP----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI  326 (427)
Q Consensus       254 ~~-~dg~v~iwd~~~~~~--~~----~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      .. ....|++|++.....  ..    .......-..++|+|+|+++++.....+.+..+++......+........++. 
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~-  239 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE-  239 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET-
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc-
Confidence            54 345799999977652  11    12556678899999999999998888888988888843222211111001111 


Q ss_pred             eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec--cCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCce
Q 014302          327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPL  404 (427)
Q Consensus       327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~  404 (427)
                       ..........++++|||++|.++..+.     ..|.+|++.  ++.+..+   +.+...+.  .|..|++.|+   |..
T Consensus       240 -~~~~~~~~~~i~ispdg~~lyvsnr~~-----~sI~vf~~d~~~g~l~~~---~~~~~~G~--~Pr~~~~s~~---g~~  305 (345)
T PF10282_consen  240 -GFTGENAPAEIAISPDGRFLYVSNRGS-----NSISVFDLDPATGTLTLV---QTVPTGGK--FPRHFAFSPD---GRY  305 (345)
T ss_dssp             -TSCSSSSEEEEEE-TTSSEEEEEECTT-----TEEEEEEECTTTTTEEEE---EEEEESSS--SEEEEEE-TT---SSE
T ss_pred             -cccccCCceeEEEecCCCEEEEEeccC-----CEEEEEEEecCCCceEEE---EEEeCCCC--CccEEEEeCC---CCE
Confidence             111222678999999999999976564     359999993  3444322   22322222  2778999875   666


Q ss_pred             eEEEe-eCceEEEEec
Q 014302          405 LSVCW-SSGFCCTYPL  419 (427)
Q Consensus       405 l~v~~-~~g~i~~~~~  419 (427)
                      |.|+. .++.|.+|.+
T Consensus       306 l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  306 LYVANQDSNTVSVFDI  321 (345)
T ss_dssp             EEEEETTTTEEEEEEE
T ss_pred             EEEEecCCCeEEEEEE
Confidence            66665 6778988875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.39  E-value=1.8e-11  Score=105.06  Aligned_cols=178  Identities=16%  Similarity=0.277  Sum_probs=135.8

Q ss_pred             CCCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEc-cCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEE
Q 014302           94 VHLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDY-EDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICI  169 (427)
Q Consensus        94 ~~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~-~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~i  169 (427)
                      .+.+.+|  .|++++|+|..++|++++.|....||.. +.+..++......+...++++.|+|.+ +.+|+|+. ..|.|
T Consensus        48 ~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isV  126 (361)
T KOG1523|consen   48 AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISV  126 (361)
T ss_pred             ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEE
Confidence            3445555  8999999999999999999999999998 444555666666788999999999999 67777765 77889


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------------------
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------------  231 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------------  231 (427)
                      |-.+                      +...|.....++.+....|+++.|+|++-+++.|..                  
T Consensus       127 cy~E----------------------~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekp  184 (361)
T KOG1523|consen  127 CYYE----------------------QENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKP  184 (361)
T ss_pred             EEEe----------------------cccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCC
Confidence            8876                      122555666677777889999999999988776541                  


Q ss_pred             -----------------EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEE
Q 014302          232 -----------------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMI  292 (427)
Q Consensus       232 -----------------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l  292 (427)
                                       .....+.+..+.|+|+|..|+-.+.|..+.+-|......  .......-+..++.|-.+...+
T Consensus       185 ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~~vv  264 (361)
T KOG1523|consen  185 APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISENSVV  264 (361)
T ss_pred             CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCCcee
Confidence                             122456799999999999999888899999999876653  2222334677788887766555


Q ss_pred             EE
Q 014302          293 LL  294 (427)
Q Consensus       293 ~~  294 (427)
                      +.
T Consensus       265 ~a  266 (361)
T KOG1523|consen  265 AA  266 (361)
T ss_pred             ec
Confidence            43

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.37  E-value=4.3e-10  Score=98.55  Aligned_cols=234  Identities=9%  Similarity=0.087  Sum_probs=148.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEE-ecC--CeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCK--GGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~-g~~--~~i~iw~~~~~~~  177 (427)
                      .+..+.|+.+...|..|+.||. ++|..+.-.+  ..........|..+=|+.   .++|. +.+  ..+++.++.    
T Consensus         7 ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~K----   76 (391)
T KOG2110|consen    7 TINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--CFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFK----   76 (391)
T ss_pred             ceeeeeeccceeEEEccCCCce-eEEecCchHH--hhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcc----
Confidence            4566779999999999998875 5776665422  111111223344455553   24433 323  346666665    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                                                      ....|..+.|                ...|.++.+.  -++|+++-.+
T Consensus        77 --------------------------------k~~~ICe~~f----------------pt~IL~VrmN--r~RLvV~Lee  106 (391)
T KOG2110|consen   77 --------------------------------KKTTICEIFF----------------PTSILAVRMN--RKRLVVCLEE  106 (391)
T ss_pred             --------------------------------cCceEEEEec----------------CCceEEEEEc--cceEEEEEcc
Confidence                                            0111222222                2356666664  3456655543


Q ss_pred             CcEEEEEcCCCCccccc----cCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302          258 GTFYLWETNTWTSEPWS----STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~~----~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                       .|+|||++..+.....    .+...+.++.+++.+.+|++-++.. +.+.+++..+.++.            ...-.|.
T Consensus       107 -~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v------------~~I~aH~  173 (391)
T KOG2110|consen  107 -SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV------------NTINAHK  173 (391)
T ss_pred             -cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee------------eEEEecC
Confidence             4999999998873322    4566678888888888999854433 45566655553221            1112356


Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g  412 (427)
                      +.+.+++|+++|.+||+   +++.+  ..||||.+.+++.+.-    |.+|.. ..+..+++|+|+   ++.|++..+.+
T Consensus       174 ~~lAalafs~~G~llAT---ASeKG--TVIRVf~v~~G~kl~e----FRRG~~-~~~IySL~Fs~d---s~~L~~sS~Te  240 (391)
T KOG2110|consen  174 GPLAALAFSPDGTLLAT---ASEKG--TVIRVFSVPEGQKLYE----FRRGTY-PVSIYSLSFSPD---SQFLAASSNTE  240 (391)
T ss_pred             CceeEEEECCCCCEEEE---eccCc--eEEEEEEcCCccEeee----eeCCce-eeEEEEEEECCC---CCeEEEecCCC
Confidence            68999999999999999   44442  4699999999887633    333333 455778999997   66899999999


Q ss_pred             eEEEEecc
Q 014302          413 FCCTYPLI  420 (427)
Q Consensus       413 ~i~~~~~~  420 (427)
                      +||+|-|-
T Consensus       241 TVHiFKL~  248 (391)
T KOG2110|consen  241 TVHIFKLE  248 (391)
T ss_pred             eEEEEEec
Confidence            99999864

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.5e-10  Score=110.50  Aligned_cols=119  Identities=13%  Similarity=0.191  Sum_probs=75.3

Q ss_pred             EEEEEccCCCEEEE-EecCCcEEEEEc--CC--CCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCC
Q 014302          240 SILKWSPTGDYFFA-AKFDGTFYLWET--NT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPP  312 (427)
Q Consensus       240 ~~~~~sp~g~~l~~-~~~dg~v~iwd~--~~--~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~  312 (427)
                      ...+|||||+.|+. +..+|...+|.+  ..  .....+......+..+.|||||+.|++....++  .|+++++.....
T Consensus       284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence            45789999998884 445676566644  32  112233344456778999999999998765543  566666554321


Q ss_pred             Cccccccccccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          313 SLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      .              .+. ....+..+.|+|||++|+.+......   ..|++|++..+....+
T Consensus       364 ~--------------~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~---~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        364 Y--------------QLTTSPENKESPSWAIDSLHLVYSAGNSNE---SELYLISLITKKTRKI  410 (428)
T ss_pred             E--------------EccCCCCCccceEECCCCCEEEEEECCCCC---ceEEEEECCCCCEEEe
Confidence            0              011 11245778999999999875333222   5699999988776544

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.36  E-value=2.2e-09  Score=100.05  Aligned_cols=229  Identities=15%  Similarity=0.238  Sum_probs=139.2

Q ss_pred             ceeeeEEcCCCCEEEEEeC-CCeEEEEEccCCCCccee--ec----------cCCcCCeeEEEEccCCCceEEEec-CCe
Q 014302          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACI--LT----------SDSQRDVKVLEWRPNGGRSLSVGC-KGG  166 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~-d~~v~vwd~~~~~~~~~~--~~----------~~~~~~v~~l~~sp~~~~~la~g~-~~~  166 (427)
                      ....++++|++++|+++.. +++|.+++++..+.....  ..          ........++.|+|+++.++++.. .+.
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~  167 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADR  167 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTE
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCE
Confidence            4567899999999988864 899999999875211111  11          012234678999999955555443 378


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP  246 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp  246 (427)
                      |.+|+++....                     .+....           .+..              ....+-+.+.|+|
T Consensus       168 v~~~~~~~~~~---------------------~l~~~~-----------~~~~--------------~~G~GPRh~~f~p  201 (345)
T PF10282_consen  168 VYVYDIDDDTG---------------------KLTPVD-----------SIKV--------------PPGSGPRHLAFSP  201 (345)
T ss_dssp             EEEEEE-TTS----------------------TEEEEE-----------EEEC--------------STTSSEEEEEE-T
T ss_pred             EEEEEEeCCCc---------------------eEEEee-----------cccc--------------ccCCCCcEEEEcC
Confidence            88998871100                     011100           0000              1245677899999


Q ss_pred             CCCEEE-EEecCCcEEEEEcC--CCCcccc-----c----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302          247 TGDYFF-AAKFDGTFYLWETN--TWTSEPW-----S----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  314 (427)
Q Consensus       247 ~g~~l~-~~~~dg~v~iwd~~--~~~~~~~-----~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~  314 (427)
                      ++++++ +...++.|.++++.  .+.....     .    ........++++|||++|+++......|.++.+......+
T Consensus       202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l  281 (345)
T PF10282_consen  202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL  281 (345)
T ss_dssp             TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE
T ss_pred             CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce
Confidence            999988 55567889999988  3322111     1    1223678899999999999988787888888885532222


Q ss_pred             cccccccccccceee-ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec--cCceEEEeeeeeeeCCCCCCCce
Q 014302          315 DAHLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPV  391 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~  391 (427)
                      ..         .... ..+...+.++++|+|++|+++...+     +.|.+|++.  ++.+.....  .+    ....|.
T Consensus       282 ~~---------~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-----~~v~vf~~d~~tG~l~~~~~--~~----~~~~p~  341 (345)
T PF10282_consen  282 TL---------VQTVPTGGKFPRHFAFSPDGRYLYVANQDS-----NTVSVFDIDPDTGKLTPVGS--SV----PIPSPV  341 (345)
T ss_dssp             EE---------EEEEEESSSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEE--EE----ESSSEE
T ss_pred             EE---------EEEEeCCCCCccEEEEeCCCCEEEEEecCC-----CeEEEEEEeCCCCcEEEecc--cc----cCCCCE
Confidence            10         1111 1233589999999999999974444     459999874  555432211  11    223477


Q ss_pred             eEEe
Q 014302          392 AFSF  395 (427)
Q Consensus       392 ~~~f  395 (427)
                      ||.|
T Consensus       342 ci~f  345 (345)
T PF10282_consen  342 CIVF  345 (345)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            8876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.36  E-value=2.7e-11  Score=110.70  Aligned_cols=204  Identities=21%  Similarity=0.313  Sum_probs=124.6

Q ss_pred             CCcCCeeEEEEccCCCceEEEecCCeEEEEe-ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEe
Q 014302          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWA-PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (427)
Q Consensus       141 ~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (427)
                      .|...|.++.|+.+. .++.++.|..+.+|. +..+.......+.  ..+..       .......-.+.....-+-+--
T Consensus        12 r~~e~vc~v~w~~~e-ei~~~~dDh~~~~~~~~~~~s~~~~~~p~--df~pt-------~~h~~~rs~~~g~~~d~~~i~   81 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNE-EIYFVSDDHQIFKWSDVSRDSVEVAKLPD--DFVPT-------DMHLGGRSSGGGKGSDTLLIC   81 (737)
T ss_pred             ccceeEEeecccccc-eEEEeccCceEEEeecccchhhhhhhCCc--ccCCc-------cccccccccCCCCCcceEEEE
Confidence            466678899999887 677777777666654 3311110000000  00000       000000000001122223334


Q ss_pred             CCCCCCccc---Cc---eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEE
Q 014302          220 GPDGRFPGL---GT---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL  293 (427)
Q Consensus       220 spdg~~l~~---~~---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~  293 (427)
                      +.||++...   +.   .+..|.+.+.+-.|+|||.-|+++++||.|++|.-...-..........|.+++|.|+.+.++
T Consensus        82 s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl  161 (737)
T KOG1524|consen   82 SNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIV  161 (737)
T ss_pred             cCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceE
Confidence            567776321   11   245588999999999999999999999999999854333344447788999999999999888


Q ss_pred             EEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          294 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       294 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ++..+.-.|+-+....+...+              ..|.+-|.++.|++....+++   |++|   -..+|||.....++
T Consensus       162 ~c~g~h~~IKpL~~n~k~i~W--------------kAHDGiiL~~~W~~~s~lI~s---gGED---~kfKvWD~~G~~Lf  221 (737)
T KOG1524|consen  162 FCQGGHISIKPLAANSKIIRW--------------RAHDGLVLSLSWSTQSNIIAS---GGED---FRFKIWDAQGANLF  221 (737)
T ss_pred             EecCCeEEEeecccccceeEE--------------eccCcEEEEeecCccccceee---cCCc---eeEEeecccCcccc
Confidence            765444333333222222122              234557899999999999988   8888   55999998766555


Q ss_pred             E
Q 014302          374 S  374 (427)
Q Consensus       374 ~  374 (427)
                      .
T Consensus       222 ~  222 (737)
T KOG1524|consen  222 T  222 (737)
T ss_pred             c
Confidence            3

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.35  E-value=4.8e-12  Score=121.06  Aligned_cols=199  Identities=17%  Similarity=0.228  Sum_probs=126.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .|+|+.|...|.++++|+.|..++||.+++.  .......+|.+.|+.++.+.+. .++|++ .|..|++|.+.      
T Consensus       192 aVyca~fDrtg~~Iitgsdd~lvKiwS~et~--~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~------  262 (1113)
T KOG0644|consen  192 AVYCAIFDRTGRYIITGSDDRLVKIWSMETA--RCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLP------  262 (1113)
T ss_pred             heeeeeeccccceEeecCccceeeeeeccch--hhhccCCCCccccchhccchhh-hhhhhcccCceEEEEecC------
Confidence            6999999999999999999999999998777  5666678999999999999887 555555 55789999987      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                         .+                .++.                          ++++|.+.|++++|+|--    +.+.||+
T Consensus       263 ---~~----------------~pvs--------------------------vLrghtgavtaiafsP~~----sss~dgt  293 (1113)
T KOG0644|consen  263 ---DG----------------APVS--------------------------VLRGHTGAVTAIAFSPRA----SSSDDGT  293 (1113)
T ss_pred             ---CC----------------chHH--------------------------HHhccccceeeeccCccc----cCCCCCc
Confidence               11                2233                          344456667777777643    5667788


Q ss_pred             EEEEEcCCCCccccc------cCCCCeeEEEECCCCCEEEEEEcCC----------------------------------
Q 014302          260 FYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGS----------------------------------  299 (427)
Q Consensus       260 v~iwd~~~~~~~~~~------~~~~~v~~v~~spdg~~l~~~~~~~----------------------------------  299 (427)
                      +++||.+ .....+.      ....-+.++.|..++...++++.+.                                  
T Consensus       294 ~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar  372 (1113)
T KOG0644|consen  294 CRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTAR  372 (1113)
T ss_pred             eEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeee
Confidence            8888776 1111110      1222333344443333333322211                                  


Q ss_pred             --ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          300 --LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       300 --~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                        -.+..|++.....   .|         ....+...+..|.++|-...++.+  ++.|   |...|||+-.+..+..
T Consensus       373 ~~~~~~vwnl~~g~l---~H---------~l~ghsd~~yvLd~Hpfn~ri~ms--ag~d---gst~iwdi~eg~pik~  433 (1113)
T KOG0644|consen  373 NDHRLCVWNLYTGQL---LH---------NLMGHSDEVYVLDVHPFNPRIAMS--AGYD---GSTIIWDIWEGIPIKH  433 (1113)
T ss_pred             eeeEeeeeecccchh---hh---------hhcccccceeeeeecCCCcHhhhh--ccCC---CceEeeecccCCccee
Confidence              1222222222200   00         011233478999999999999875  6666   7799999976654433

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.33  E-value=1.1e-09  Score=94.18  Aligned_cols=179  Identities=16%  Similarity=0.227  Sum_probs=119.1

Q ss_pred             CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcce
Q 014302          121 TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRW  200 (427)
Q Consensus       121 ~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (427)
                      ..|.||| +..  +..........+|.++.++++   .|++.-.+.|.||...  .+                      .
T Consensus        75 NkviIWD-D~k--~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~--~n----------------------~  124 (346)
T KOG2111|consen   75 NKVIIWD-DLK--ERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFP--DN----------------------P  124 (346)
T ss_pred             ceEEEEe-ccc--CcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcC--CC----------------------h
Confidence            4788999 322  344455566788999999876   4555567889999875  11                      0


Q ss_pred             eEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCc---cccccC
Q 014302          201 TLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTS---EPWSST  276 (427)
Q Consensus       201 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~---~~~~~~  276 (427)
                      +.+..++..         -+|.               +..+++-.-+...|| -|-.-|.|+|-|+...+.   .....|
T Consensus       125 k~l~~~et~---------~NPk---------------GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH  180 (346)
T KOG2111|consen  125 KLLHVIETR---------SNPK---------------GLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH  180 (346)
T ss_pred             hheeeeecc---------cCCC---------------ceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc
Confidence            111111111         1121               222222222334555 456679999999987766   334499


Q ss_pred             CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC
Q 014302          277 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD  356 (427)
Q Consensus       277 ~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d  356 (427)
                      .+.|.+++.+-+|..+|+++..+..|++++..++...          .+...-.....|.+|+|||++.+||+   .++.
T Consensus       181 ~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l----------~E~RRG~d~A~iy~iaFSp~~s~Lav---sSdK  247 (346)
T KOG2111|consen  181 DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLL----------QELRRGVDRADIYCIAFSPNSSWLAV---SSDK  247 (346)
T ss_pred             cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEe----------eeeecCCchheEEEEEeCCCccEEEE---EcCC
Confidence            9999999999999999999888877888887775221          11222223448999999999999999   4555


Q ss_pred             cceeEEEEEEecc
Q 014302          357 IYKGLIAIYDARR  369 (427)
Q Consensus       357 ~~~g~i~vwd~~~  369 (427)
                         |+|+||.++.
T Consensus       248 ---gTlHiF~l~~  257 (346)
T KOG2111|consen  248 ---GTLHIFSLRD  257 (346)
T ss_pred             ---CeEEEEEeec
Confidence               8899999875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.33  E-value=2e-09  Score=102.61  Aligned_cols=241  Identities=19%  Similarity=0.308  Sum_probs=158.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC-CcCCeeEEEE-ccCCCceEEE-ec-CCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEW-RPNGGRSLSV-GC-KGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~v~~l~~-sp~~~~~la~-g~-~~~i~iw~~~~~~  176 (427)
                      .+.++.+.+.+..++.++.|+.+.+|+...... ....... +...+..+.+ ++++..+++. +. ++.+.+|+...  
T Consensus        67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--  143 (466)
T COG2319          67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEK-LIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLST--  143 (466)
T ss_pred             eEEEEEECCCCcEEEEecCCCcEEEEEcCCCce-eEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecC--
Confidence            789999999999999999999999999887731 2222223 2236777777 7888524443 44 58899999870  


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                                            .....                          ..+..|...+..++|+|+++++++++.
T Consensus       144 ----------------------~~~~~--------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~  175 (466)
T COG2319         144 ----------------------PGKLI--------------------------RTLEGHSESVTSLAFSPDGKLLASGSS  175 (466)
T ss_pred             ----------------------CCeEE--------------------------EEEecCcccEEEEEECCCCCEEEecCC
Confidence                                  00011                          123446677889999999998888775


Q ss_pred             -CCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          257 -DGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       257 -dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                       |+.+++|++...... ....|...+..++|+|++..++.+...++.+..|+...... +..          ....+...
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~-~~~----------~~~~~~~~  244 (466)
T COG2319         176 LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL-LRS----------TLSGHSDS  244 (466)
T ss_pred             CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE-Eee----------ecCCCCcc
Confidence             999999999885553 33468999999999999985555546666777664332110 000          00111112


Q ss_pred             eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce-EEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCce
Q 014302          335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGF  413 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~  413 (427)
                      . ...|+|++.++++   ++.+   +.+++|++..... +...     .+.  .....++.|.|.   +..+..+..++.
T Consensus       245 ~-~~~~~~~~~~~~~---~~~d---~~~~~~~~~~~~~~~~~~-----~~~--~~~v~~~~~~~~---~~~~~~~~~d~~  307 (466)
T COG2319         245 V-VSSFSPDGSLLAS---GSSD---GTIRLWDLRSSSSLLRTL-----SGH--SSSVLSVAFSPD---GKLLASGSSDGT  307 (466)
T ss_pred             e-eEeECCCCCEEEE---ecCC---CcEEEeeecCCCcEEEEE-----ecC--CccEEEEEECCC---CCEEEEeeCCCc
Confidence            2 2279999988875   5555   6699999987654 2111     222  233557788883   344444777788


Q ss_pred             EEEEecc
Q 014302          414 CCTYPLI  420 (427)
Q Consensus       414 i~~~~~~  420 (427)
                      +.+|++.
T Consensus       308 ~~~~~~~  314 (466)
T COG2319         308 VRLWDLE  314 (466)
T ss_pred             EEEEEcC
Confidence            8888643

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=3.2e-11  Score=108.95  Aligned_cols=275  Identities=16%  Similarity=0.186  Sum_probs=172.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC--ceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|+.+.|+..|..|++|+.|..|.+|||.... .......+|...|....|-|...  .++.++.++.+++=.+...+  
T Consensus       144 cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~--  220 (559)
T KOG1334|consen  144 CVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS-PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG--  220 (559)
T ss_pred             ccceeeecccCceeeccCccceEEeehhhccC-cccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc--
Confidence            79999999999999999999999999998872 23445567999999888988642  35555667888876654111  


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC--cccC-------------ce------EEeccC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF--PGLG-------------TP------IRRGFG  237 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--l~~~-------------~~------~~~~~~  237 (427)
                                          .......+..| .++|..++.-|+...  +.++             .+      ...+..
T Consensus       221 --------------------~~e~t~rl~~h-~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~  279 (559)
T KOG1334|consen  221 --------------------YVENTKRLAPH-EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK  279 (559)
T ss_pred             --------------------ceecceecccc-cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence                                11111112222 556666666655433  1000             00      111222


Q ss_pred             ---CeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCcc-------ccc------cCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          238 ---GLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-------PWS------STSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       238 ---~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~-------~~~------~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                         ..+.++..|... .+++++.|..+++||.+.....       .+.      .....|++++|+.++.-|+++-++. 
T Consensus       280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe-  358 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDE-  358 (559)
T ss_pred             cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeeccc-
Confidence               456788888777 5669999999999998865432       111      3345689999998887777655544 


Q ss_pred             eeeeeeeCCCCCCccccccccc---cccceeecc---CCceeEEEE-CCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          301 TLGSIHFASKPPSLDAHLLPVD---LPDIVSLTG---SQGIEKIAW-DASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       301 ~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~i~~v~~-sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      .|+.++-.-...   ....+..   .-....+++   ...|..+-| -|...|+++   |++-   |.|.||+-++++++
T Consensus       359 ~IYLF~~~~~~G---~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS---GSDC---GhIFiW~K~t~eii  429 (559)
T KOG1334|consen  359 DIYLFNKSMGDG---SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS---GSDC---GHIFIWDKKTGEII  429 (559)
T ss_pred             ceEEeccccccC---CCCCCCcchhhccchhhcccccccccceeeeccCccceEEe---cCcc---ceEEEEecchhHHH
Confidence            555542111111   0001110   000011111   124666654 599999988   5554   67999999998876


Q ss_pred             EEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          374 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ..     +.+-..  -+.|+..||.   -.+||.+--+..|++|+=
T Consensus       430 ~~-----MegDr~--VVNCLEpHP~---~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  430 RF-----MEGDRH--VVNCLEPHPH---LPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             HH-----hhcccc--eEeccCCCCC---CchhhccCCccceeeecC
Confidence            32     222222  2569999996   668998889999999974

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.32  E-value=1.1e-09  Score=112.86  Aligned_cols=282  Identities=14%  Similarity=0.230  Sum_probs=165.4

Q ss_pred             CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCC-CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus        98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      ....|.++.+-++...|+.+..+|.|.+...+.. ..........-..+|.+++||||+..++.+.+++.+.+.+-+++-
T Consensus        74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            3447999999999999999999999988733222 111233333456789999999999555555556777765433110


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC--------CCCcc-----------cCceEEeccC
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--------GRFPG-----------LGTPIRRGFG  237 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--------g~~l~-----------~~~~~~~~~~  237 (427)
                        ..-.                   .+..-... ...--.+-|...        |+..+           ....+. ...
T Consensus       154 --i~E~-------------------~l~~~~~~-~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd  210 (928)
T PF04762_consen  154 --ISEV-------------------PLDSDDFG-ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDD  210 (928)
T ss_pred             --EEEe-------------------ecCccccC-CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCC
Confidence              0000                   00000000 011112222211        11100           001122 344


Q ss_pred             CeEEEEEccCCCEEEEEec---C---CcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          238 GLSILKWSPTGDYFFAAKF---D---GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~---d---g~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      .-..++|-.||+++|+++.   .   +.+|||+-. +...... ...+--.+++|.|.|+.+|++.... .-..+.+..+
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~-~~~~VvFfEr  288 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLP-DRHDVVFFER  288 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcC-CCcEEEEEec
Confidence            5668999999999996654   2   469999865 4332221 2333345789999999999876533 2244555554


Q ss_pred             CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCc
Q 014302          311 PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP  390 (427)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  390 (427)
                      .+--.+.+. +..     ......|..+.|++|+..||+..   .|    .|.+|-..+...+.....-+-..  ..  .
T Consensus       289 NGLrhgeF~-l~~-----~~~~~~v~~l~Wn~ds~iLAv~~---~~----~vqLWt~~NYHWYLKqei~~~~~--~~--~  351 (928)
T PF04762_consen  289 NGLRHGEFT-LRF-----DPEEEKVIELAWNSDSEILAVWL---ED----RVQLWTRSNYHWYLKQEIRFSSS--ES--V  351 (928)
T ss_pred             CCcEeeeEe-cCC-----CCCCceeeEEEECCCCCEEEEEe---cC----CceEEEeeCCEEEEEEEEEccCC--CC--C
Confidence            332222222 100     01223789999999999999964   22    29999999888765543333211  11  2


Q ss_pred             eeEEeccCCCCCceeEEEeeCceEEEEeccccC
Q 014302          391 VAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  423 (427)
Q Consensus       391 ~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~  423 (427)
                      ..+.|||.  ....|.+.+.+|++..|++-+..
T Consensus       352 ~~~~Wdpe--~p~~L~v~t~~g~~~~~~~~~~v  382 (928)
T PF04762_consen  352 NFVKWDPE--KPLRLHVLTSNGQYEIYDFAWDV  382 (928)
T ss_pred             CceEECCC--CCCEEEEEecCCcEEEEEEEEEE
Confidence            34889997  45568888888999999887754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.32  E-value=1.7e-09  Score=93.08  Aligned_cols=236  Identities=15%  Similarity=0.163  Sum_probs=146.6

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCC--eeEEEEccCCCceEEEec-C------CeEEEEec
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRD--VKVLEWRPNGGRSLSVGC-K------GGICIWAP  172 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~--v~~l~~sp~~~~~la~g~-~------~~i~iw~~  172 (427)
                      ..+++|+.|..-+++|..+ -.+||+.+.-.  .......+.++  +..+-|..+  .+..+|+ .      +.+.|||-
T Consensus         8 ~lsvs~NQD~ScFava~~~-Gfriyn~~P~k--e~~~r~~~~~G~~~veMLfR~N--~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    8 TLSVSFNQDHSCFAVATDT-GFRIYNCDPFK--ESASRQFIDGGFKIVEMLFRSN--YLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             eeEEEEccCCceEEEEecC-ceEEEecCchh--hhhhhccccCchhhhhHhhhhc--eEEEecCCCCCCCCCceEEEEec
Confidence            4558999999999988654 57899887641  11111112222  222222222  2333332 2      45889984


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF  252 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~  252 (427)
                      .                                    ....|..+.|                ...|.++.++++  .|+
T Consensus        83 ~------------------------------------k~~~i~el~f----------------~~~I~~V~l~r~--riV  108 (346)
T KOG2111|consen   83 L------------------------------------KERCIIELSF----------------NSEIKAVKLRRD--RIV  108 (346)
T ss_pred             c------------------------------------cCcEEEEEEe----------------ccceeeEEEcCC--eEE
Confidence            3                                    1223333333                346778888765  455


Q ss_pred             EEecCCcEEEEEcCCCC-ccc-cc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee
Q 014302          253 AAKFDGTFYLWETNTWT-SEP-WS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS  328 (427)
Q Consensus       253 ~~~~dg~v~iwd~~~~~-~~~-~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      +.- .+.|+||.....- ... +.  .....+.+++=..+..+|++-+...|.+.+.++......          +....
T Consensus       109 vvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~----------~p~~I  177 (346)
T KOG2111|consen  109 VVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN----------APSII  177 (346)
T ss_pred             EEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC----------CceEE
Confidence            544 6889999876332 211 11  222234444444456677777777778888888765221          01222


Q ss_pred             eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEE
Q 014302          329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC  408 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~  408 (427)
                      ..|...|.+|+.+-+|..||+++.-+     -.|+|||..++..+.-...|     .+.+...||+|.|+   ..+|||.
T Consensus       178 ~AH~s~Iacv~Ln~~Gt~vATaStkG-----TLIRIFdt~~g~~l~E~RRG-----~d~A~iy~iaFSp~---~s~Lavs  244 (346)
T KOG2111|consen  178 NAHDSDIACVALNLQGTLVATASTKG-----TLIRIFDTEDGTLLQELRRG-----VDRADIYCIAFSPN---SSWLAVS  244 (346)
T ss_pred             EcccCceeEEEEcCCccEEEEeccCc-----EEEEEEEcCCCcEeeeeecC-----CchheEEEEEeCCC---ccEEEEE
Confidence            34556899999999999999964433     35999999999887443222     34456889999997   7799999


Q ss_pred             eeCceEEEEecc
Q 014302          409 WSSGFCCTYPLI  420 (427)
Q Consensus       409 ~~~g~i~~~~~~  420 (427)
                      ...|++|+|-+.
T Consensus       245 SdKgTlHiF~l~  256 (346)
T KOG2111|consen  245 SDKGTLHIFSLR  256 (346)
T ss_pred             cCCCeEEEEEee
Confidence            999999999874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.32  E-value=3.7e-09  Score=92.95  Aligned_cols=232  Identities=17%  Similarity=0.226  Sum_probs=144.2

Q ss_pred             CCCceeeeEEcCCCCEEEEEeC-CCeEEEEEccCCC-CcceeeccCCcCC----------eeEEEEccCCCceEEEe-cC
Q 014302           98 PEVDLQGVSWHQHKHIVAFISG-STQVIVRDYEDSG-KDACILTSDSQRD----------VKVLEWRPNGGRSLSVG-CK  164 (427)
Q Consensus        98 ~~~~V~~l~~sp~g~~lat~~~-d~~v~vwd~~~~~-~~~~~~~~~~~~~----------v~~l~~sp~~~~~la~g-~~  164 (427)
                      .+..-..++++++|++|+++.. .+.|.|+-++..+ -........|.+.          +-...+.|+++.++++. +.
T Consensus        87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~  166 (346)
T COG2706          87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT  166 (346)
T ss_pred             CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence            3445588999999999998865 4889998886541 1122222234444          77889999994444443 23


Q ss_pred             CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEE
Q 014302          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKW  244 (427)
Q Consensus       165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~  244 (427)
                      +.|.+|+++ ++.                                               +.......-....+-+.+.|
T Consensus       167 Dri~~y~~~-dg~-----------------------------------------------L~~~~~~~v~~G~GPRHi~F  198 (346)
T COG2706         167 DRIFLYDLD-DGK-----------------------------------------------LTPADPAEVKPGAGPRHIVF  198 (346)
T ss_pred             ceEEEEEcc-cCc-----------------------------------------------cccccccccCCCCCcceEEE
Confidence            778899887 111                                               00000000023456788999


Q ss_pred             ccCCCEEE-EEecCCcEEEEEcCCC--Cccccc---------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302          245 SPTGDYFF-AAKFDGTFYLWETNTW--TSEPWS---------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  312 (427)
Q Consensus       245 sp~g~~l~-~~~~dg~v~iwd~~~~--~~~~~~---------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~  312 (427)
                      +|++++.+ ++--+++|.+|.....  +...+.         ....+..++..++||++|.++......|..+.+.....
T Consensus       199 Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g  278 (346)
T COG2706         199 HPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGG  278 (346)
T ss_pred             cCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCC
Confidence            99999988 5566899999998774  221111         34567788999999999987655556777777766422


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec--cCceEEEeeeeeeeCCCCCCCc
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKP  390 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~  390 (427)
                      .+.-    +    .....++...+...|+++|++|+++...++     .|.+|.+.  ++.+-.+.      .-....+|
T Consensus       279 ~L~~----~----~~~~teg~~PR~F~i~~~g~~Liaa~q~sd-----~i~vf~~d~~TG~L~~~~------~~~~~p~P  339 (346)
T COG2706         279 KLEL----V----GITPTEGQFPRDFNINPSGRFLIAANQKSD-----NITVFERDKETGRLTLLG------RYAVVPEP  339 (346)
T ss_pred             EEEE----E----EEeccCCcCCccceeCCCCCEEEEEccCCC-----cEEEEEEcCCCceEEecc------cccCCCCc
Confidence            1110    0    011122334688999999999999644443     38888774  44443111      11133458


Q ss_pred             eeEEec
Q 014302          391 VAFSFH  396 (427)
Q Consensus       391 ~~~~f~  396 (427)
                      +||.|.
T Consensus       340 vcv~f~  345 (346)
T COG2706         340 VCVKFL  345 (346)
T ss_pred             EEEEEc
Confidence            899885

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.32  E-value=2.8e-10  Score=96.54  Aligned_cols=197  Identities=13%  Similarity=0.223  Sum_probs=135.0

Q ss_pred             ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCC-CCcceeeccCCcCCeeEEEEccCCCceEEE-ecCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~la~-g~~~~i~iw~~~~~~~  177 (427)
                      ++++..|+.-. ++|.+++-|-+..|||++.+ ..........|.+.|.+++|...+..++|+ |.||.++++|+..   
T Consensus       152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~---  228 (364)
T KOG0290|consen  152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS---  228 (364)
T ss_pred             cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc---
Confidence            89999998755 58889999999999999987 222344455799999999999977667665 5679999999971   


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CEEEE-Ee
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DYFFA-AK  255 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~l~~-~~  255 (427)
                            .              + ...-.++...                        ...+...++|++.. +++|+ +-
T Consensus       229 ------l--------------e-HSTIIYE~p~------------------------~~~pLlRLswnkqDpnymATf~~  263 (364)
T KOG0290|consen  229 ------L--------------E-HSTIIYEDPS------------------------PSTPLLRLSWNKQDPNYMATFAM  263 (364)
T ss_pred             ------c--------------c-cceEEecCCC------------------------CCCcceeeccCcCCchHHhhhhc
Confidence                  0              0 0000011110                        02244557777644 46664 44


Q ss_pred             cCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-CccccccccccccceeeccC
Q 014302          256 FDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  332 (427)
                      ....|.|.|++....  ..+..|.+.|..++|.|.....+++++++....+|++..... ...   .|     ......+
T Consensus       264 dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~---dP-----ilay~a~  335 (364)
T KOG0290|consen  264 DSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE---DP-----ILAYTAG  335 (364)
T ss_pred             CCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC---Cc-----hhhhhcc
Confidence            456799999997765  345599999999999998777667777777777888776422 111   11     1112244


Q ss_pred             CceeEEEEC-CCCCEEEEEEec
Q 014302          333 QGIEKIAWD-ASGERLAVSYKG  353 (427)
Q Consensus       333 ~~i~~v~~s-p~g~~La~~~~~  353 (427)
                      +.|+.+.|+ ....++++||.-
T Consensus       336 ~EVNqi~Ws~~~~Dwiai~~~k  357 (364)
T KOG0290|consen  336 GEVNQIQWSSSQPDWIAICFGK  357 (364)
T ss_pred             ceeeeeeecccCCCEEEEEecC
Confidence            589999999 567899997543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=9.6e-10  Score=105.86  Aligned_cols=118  Identities=14%  Similarity=0.188  Sum_probs=76.4

Q ss_pred             EEEEEccCCCEEE-EEecCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCc
Q 014302          240 SILKWSPTGDYFF-AAKFDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSL  314 (427)
Q Consensus       240 ~~~~~sp~g~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~  314 (427)
                      ...+|+|||+.|+ +.+.++.  |+++|+.+++...+..+......++|+|||+.|++.+..++  .++.+++.....  
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~--  342 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV--  342 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--
Confidence            3578999999887 5566665  77778887766555555556778999999999988775443  455555543311  


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                          ..+     .  .........+|+|||++|+.+......   ..|.++|+.++...
T Consensus       343 ----~~L-----t--~~g~~~~~~~~SpDG~~l~~~~~~~g~---~~I~~~dl~~g~~~  387 (448)
T PRK04792        343 ----SRL-----T--FEGEQNLGGSITPDGRSMIMVNRTNGK---FNIARQDLETGAMQ  387 (448)
T ss_pred             ----EEE-----e--cCCCCCcCeeECCCCCEEEEEEecCCc---eEEEEEECCCCCeE
Confidence                000     0  011123456899999999886433222   34777888877654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.29  E-value=1.9e-09  Score=103.63  Aligned_cols=181  Identities=17%  Similarity=0.248  Sum_probs=110.7

Q ss_pred             eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCCccccccCcccccccccCCCCc
Q 014302          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (427)
Q Consensus       122 ~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (427)
                      .|.++|.+..  ....+. .+...+.+.+|+|||+.++.+...   ..|.+|++.         ++              
T Consensus       171 ~l~~~d~~g~--~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~---------~g--------------  224 (417)
T TIGR02800       171 ELQVADYDGA--NPQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLA---------TG--------------  224 (417)
T ss_pred             eEEEEcCCCC--CCEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECC---------CC--------------
Confidence            5666665433  233332 455578899999999555544432   457788876         11              


Q ss_pred             ceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCC--cEEEEEcCCCCcccccc
Q 014302          199 RWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWSS  275 (427)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~~  275 (427)
                      ....                             +..+.+.+..++|+|||+.|+ +.+.++  .|++||+.++....+..
T Consensus       225 ~~~~-----------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~  275 (417)
T TIGR02800       225 QREK-----------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN  275 (417)
T ss_pred             CEEE-----------------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC
Confidence            0000                             111122345678999998877 444444  58888988776655554


Q ss_pred             CCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302          276 TSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       276 ~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      +........|+|||+.|++++...+  .++.+++.....      ..+       ......+..+.|+|+|++|+.+...
T Consensus       276 ~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~------~~l-------~~~~~~~~~~~~spdg~~i~~~~~~  342 (417)
T TIGR02800       276 GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV------RRL-------TFRGGYNASPSWSPDGDLIAFVHRE  342 (417)
T ss_pred             CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE------EEe-------ecCCCCccCeEECCCCCEEEEEEcc
Confidence            5555567899999999988765543  466665543210      000       1122356788999999999986443


Q ss_pred             CCCcceeEEEEEEeccCceE
Q 014302          354 GDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ...   ..|.+||+.++...
T Consensus       343 ~~~---~~i~~~d~~~~~~~  359 (417)
T TIGR02800       343 GGG---FNIAVMDLDGGGER  359 (417)
T ss_pred             CCc---eEEEEEeCCCCCeE
Confidence            321   46999999876543

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.29  E-value=3.5e-09  Score=101.01  Aligned_cols=240  Identities=22%  Similarity=0.305  Sum_probs=157.3

Q ss_pred             ceeeeEE-cCCCC-EEEEEeC-CCeEEEEEccC-CCCcceeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEEeccC
Q 014302          101 DLQGVSW-HQHKH-IVAFISG-STQVIVRDYED-SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~-sp~g~-~lat~~~-d~~v~vwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw~~~~  174 (427)
                      .+..+.+ ++++. .++..+. |+.+++|+... .  ........|...|..++|+|++. .++.+.  ++.+++|++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG--KLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecCCC--eEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCC
Confidence            4666666 88887 5555444 89999999987 3  35555667889999999999995 555443  79999999870


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YFFA  253 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l~~  253 (427)
                               +                ....                          .+..|...+.+++|+|++. .+++
T Consensus       188 ---------~----------------~~~~--------------------------~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         188 ---------G----------------KPLS--------------------------TLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             ---------C----------------ceEE--------------------------eeccCCCceEEEEEcCCcceEEEE
Confidence                     0                1111                          1222567889999999998 4445


Q ss_pred             EecCCcEEEEEcCCCCccc--cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302          254 AKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  331 (427)
Q Consensus       254 ~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (427)
                      ++.|+.|++||...+....  +..|.... -..|+|++..+++ +..++.+.+|++......+           .....+
T Consensus       217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~-----------~~~~~~  283 (466)
T COG2319         217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS-GSSDGTIRLWDLRSSSSLL-----------RTLSGH  283 (466)
T ss_pred             ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE-ecCCCcEEEeeecCCCcEE-----------EEEecC
Confidence            5899999999888555543  44566554 3389999977774 4555577777776542200           000223


Q ss_pred             CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEE-ee
Q 014302          332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC-WS  410 (427)
Q Consensus       332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~-~~  410 (427)
                      ...|.++.|+|++..+++   ++.|   +.+.+|++..........   ......  ....+.| +. . +..+.++ ..
T Consensus       284 ~~~v~~~~~~~~~~~~~~---~~~d---~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~-~~-~-~~~~~~~~~~  349 (466)
T COG2319         284 SSSVLSVAFSPDGKLLAS---GSSD---GTVRLWDLETGKLLSSLT---LKGHEG--PVSSLSF-SP-D-GSLLVSGGSD  349 (466)
T ss_pred             CccEEEEEECCCCCEEEE---eeCC---CcEEEEEcCCCceEEEee---ecccCC--ceEEEEE-CC-C-CCEEEEeecC
Confidence            458899999999999988   4444   349999888776543332   111111  2445666 42 1 4455555 56


Q ss_pred             CceEEEEeccc
Q 014302          411 SGFCCTYPLIF  421 (427)
Q Consensus       411 ~g~i~~~~~~~  421 (427)
                      ++.+.+|++..
T Consensus       350 d~~~~~~~~~~  360 (466)
T COG2319         350 DGTIRLWDLRT  360 (466)
T ss_pred             CCcEEeeecCC
Confidence            77777776543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.28  E-value=1.9e-11  Score=109.78  Aligned_cols=255  Identities=14%  Similarity=0.164  Sum_probs=173.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .-..+.++.+|+.|+.|+.-|.+-.+|+.++   .......-...|.++.|-.+. +++|++..+.+.|||-.       
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---~L~~Ei~v~Etv~Dv~~LHne-q~~AVAQK~y~yvYD~~-------  199 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---KLHFEINVMETVRDVTFLHNE-QFFAVAQKKYVYVYDNN-------  199 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccc---eeeeeeehhhhhhhhhhhcch-HHHHhhhhceEEEecCC-------
Confidence            5577899999999999999999999999887   333333445679999999877 89999999999999976       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~  243 (427)
                                      +.+..|+.     ....|..+.|-|.--+++...                 .++...+.+..|+
T Consensus       200 ----------------GtElHClk-----~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~  258 (545)
T KOG1272|consen  200 ----------------GTELHCLK-----RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMK  258 (545)
T ss_pred             ----------------CcEEeehh-----hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhh
Confidence                            44555554     345555566655444433221                 1333456778888


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  322 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  322 (427)
                      -+|-+..+-+|...|+|.+|...+.+. .....|.++|.++++.++|+|+++++-+. .+.+|++..... +..+..|. 
T Consensus       259 qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr-~~kIWDlR~~~q-l~t~~tp~-  335 (545)
T KOG1272|consen  259 QNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR-KVKIWDLRNFYQ-LHTYRTPH-  335 (545)
T ss_pred             cCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc-ceeEeeeccccc-cceeecCC-
Confidence            889888888999999999999887776 45668999999999999999999875444 777777776421 11111122 


Q ss_pred             cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC--ceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                                 +...+++|..|- ||.+ .|.      .|.||.=...  ..-..   -+++-. ....+..+.|.|.  
T Consensus       336 -----------~a~~ls~Sqkgl-LA~~-~G~------~v~iw~d~~~~s~~~~~---pYm~H~-~~~~V~~l~FcP~--  390 (545)
T KOG1272|consen  336 -----------PASNLSLSQKGL-LALS-YGD------HVQIWKDALKGSGHGET---PYMNHR-CGGPVEDLRFCPY--  390 (545)
T ss_pred             -----------Cccccccccccc-eeee-cCC------eeeeehhhhcCCCCCCc---chhhhc-cCcccccceeccH--
Confidence                       568889998774 4442 233      2999953211  11100   011111 1112446778884  


Q ss_pred             CCceeEEEeeCceEEE
Q 014302          401 QGPLLSVCWSSGFCCT  416 (427)
Q Consensus       401 ~g~~l~v~~~~g~i~~  416 (427)
                       ..+|+||-+.|.-.+
T Consensus       391 -EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  391 -EDVLGIGHAGGITSI  405 (545)
T ss_pred             -HHeeeccccCCceeE
Confidence             679999988885443

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.28  E-value=1e-10  Score=97.91  Aligned_cols=161  Identities=13%  Similarity=0.160  Sum_probs=113.3

Q ss_pred             CceeeeEEcC-CCC--EEEEEeCCCeEEEEEccCCC--------CcceeeccCCcCCeeEEEEccCCCceEEEecCCeEE
Q 014302          100 VDLQGVSWHQ-HKH--IVAFISGSTQVIVRDYEDSG--------KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC  168 (427)
Q Consensus       100 ~~V~~l~~sp-~g~--~lat~~~d~~v~vwd~~~~~--------~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~  168 (427)
                      ..|.|..|.- ++.  +|+.|..+|.|.+||++.+.        .+...-...|..+|.++.+.+.-..=+..|.+..+.
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~  230 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV  230 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence            3677777644 333  67788899999999998851        112223345889999999987553444444456677


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG  248 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g  248 (427)
                      .|+++..                           ...+.                    ....+.....++..+.+-||+
T Consensus       231 ~~Sl~~s---------------------------~gslq--------------------~~~e~~lknpGv~gvrIRpD~  263 (323)
T KOG0322|consen  231 MYSLNHS---------------------------TGSLQ--------------------IRKEITLKNPGVSGVRIRPDG  263 (323)
T ss_pred             eeeeccc---------------------------cCccc--------------------ccceEEecCCCccceEEccCC
Confidence            8888610                           00011                    011223334578889999999


Q ss_pred             CEEEEEecCCcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302          249 DYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  308 (427)
Q Consensus       249 ~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~  308 (427)
                      +.+|+++.|+.||||..++.+.... ..|...|++++|+|+...+|.+ +.+..|-.|+++
T Consensus       264 KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaa-skD~rISLWkLY  323 (323)
T KOG0322|consen  264 KILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAA-SKDARISLWKLY  323 (323)
T ss_pred             cEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhc-cCCceEEeeecC
Confidence            9999999999999999999998544 4899999999999998888766 455477777653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=2e-09  Score=103.85  Aligned_cols=183  Identities=18%  Similarity=0.246  Sum_probs=110.9

Q ss_pred             eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCCccccccCcccccccccCCCCc
Q 014302          122 QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGT  198 (427)
Q Consensus       122 ~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (427)
                      .+.++|.+..  ....+ ..+...+...+|+|||++++.++.+   ..|.+|++.         ++              
T Consensus       180 ~l~~~d~~g~--~~~~l-~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~---------~g--------------  233 (430)
T PRK00178        180 TLQRSDYDGA--RAVTL-LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLD---------TG--------------  233 (430)
T ss_pred             EEEEECCCCC--CceEE-ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECC---------CC--------------
Confidence            3556666543  23332 3455678999999999666555533   346667765         11              


Q ss_pred             ceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCC--cEEEEEcCCCCcccccc
Q 014302          199 RWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG--TFYLWETNTWTSEPWSS  275 (427)
Q Consensus       199 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg--~v~iwd~~~~~~~~~~~  275 (427)
                      ....+.                             ...+.+...+|||||+.|+ +.+.++  .|++||+.+++...+..
T Consensus       234 ~~~~l~-----------------------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~  284 (430)
T PRK00178        234 RREQIT-----------------------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTN  284 (430)
T ss_pred             CEEEcc-----------------------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEccc
Confidence            101100                             0112233578999999887 555555  58888998877655555


Q ss_pred             CCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302          276 TSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       276 ~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      +......+.|+|||+.|++.+...+  .++.+++......      .+     .  .........+|+|||++|+.+...
T Consensus       285 ~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~------~l-----t--~~~~~~~~~~~Spdg~~i~~~~~~  351 (430)
T PRK00178        285 HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE------RV-----T--FVGNYNARPRLSADGKTLVMVHRQ  351 (430)
T ss_pred             CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE------Ee-----e--cCCCCccceEECCCCCEEEEEEcc
Confidence            5556677899999999988765543  4666655443110      00     0  011123457899999999886433


Q ss_pred             CCCcceeEEEEEEeccCceEEE
Q 014302          354 GDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      ...   ..|.+||+.++....+
T Consensus       352 ~~~---~~l~~~dl~tg~~~~l  370 (430)
T PRK00178        352 DGN---FHVAAQDLQRGSVRIL  370 (430)
T ss_pred             CCc---eEEEEEECCCCCEEEc
Confidence            222   4589999988776544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=2.3e-10  Score=105.03  Aligned_cols=224  Identities=18%  Similarity=0.284  Sum_probs=142.9

Q ss_pred             eccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceee
Q 014302          138 LTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA  216 (427)
Q Consensus       138 ~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  216 (427)
                      ...+|.+-|++++|+.+| .+|++|+| -.+.|||.-                         ..+++..+..        
T Consensus        45 eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~-------------------------~~KllhsI~T--------   90 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPF-------------------------EYKLLHSIST--------   90 (758)
T ss_pred             hhccccceecceeecCCC-CEEeecCCcceEEeecch-------------------------hcceeeeeec--------
Confidence            346899999999999999 78999987 668899985                         2233332322        


Q ss_pred             eEeCCCCCCcccCceEEeccCCeEEEEEcc--CCCEEEEEecCCcEEEEEcCCCCc-----------cccccCCCCeeEE
Q 014302          217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSP--TGDYFFAAKFDGTFYLWETNTWTS-----------EPWSSTSGFVTGA  283 (427)
Q Consensus       217 ~~~spdg~~l~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~v~~v  283 (427)
                                       +|.+.|.++.|-|  +.+.+++|..|..|+++|+...+.           ..+..|...|..+
T Consensus        91 -----------------gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKri  153 (758)
T KOG1310|consen   91 -----------------GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRI  153 (758)
T ss_pred             -----------------ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhhe
Confidence                             3667788888876  345677999999999999985331           1233788899999


Q ss_pred             EECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEE
Q 014302          284 TWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLI  362 (427)
Q Consensus       284 ~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i  362 (427)
                      +-.|++...+-.++++|++++.++......-.....+..+..  ....--...++..+|... +||+   |+.|-+   .
T Consensus       154 a~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n--y~~~lielk~ltisp~rp~~laV---Ggsdpf---a  225 (758)
T KOG1310|consen  154 ATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN--YNPQLIELKCLTISPSRPYYLAV---GGSDPF---A  225 (758)
T ss_pred             ecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHH--hchhhheeeeeeecCCCCceEEe---cCCCch---h
Confidence            999999777777788889999999874211111101110000  000001567889998655 5666   777744   9


Q ss_pred             EEEEecc-Cc-----------------eEEEeeeeeeeCC-C-CCCCcee---EEeccCCCCCceeEEEeeCceEEEEec
Q 014302          363 AIYDARR-TP-----------------LISLSLIGFIRGP-G-DNPKPVA---FSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       363 ~vwd~~~-~~-----------------~~~~~~~~~~~~~-~-~~~~~~~---~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++||.+. .+                 ++..-.-+.+... + ......|   ++|.|+   |.-|.|.|+.-.+.+|++
T Consensus       226 rLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpN---GtElLvs~~gEhVYlfdv  302 (758)
T KOG1310|consen  226 RLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPN---GTELLVSWGGEHVYLFDV  302 (758)
T ss_pred             hhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCC---CcEEEEeeCCeEEEEEee
Confidence            9999431 11                 0110001111111 1 1112333   455564   788999999999999997


Q ss_pred             cccC
Q 014302          420 IFRS  423 (427)
Q Consensus       420 ~~~~  423 (427)
                      -+..
T Consensus       303 n~~~  306 (758)
T KOG1310|consen  303 NEDK  306 (758)
T ss_pred             cCCC
Confidence            6654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.26  E-value=4.1e-09  Score=100.72  Aligned_cols=123  Identities=15%  Similarity=0.142  Sum_probs=73.2

Q ss_pred             eEEEEEccCCCEEEEEe-cCC----cEEEEEcCCC---CccccccC-CCCeeEEEECCCCCEEEEEEcCCc--eeeeeee
Q 014302          239 LSILKWSPTGDYFFAAK-FDG----TFYLWETNTW---TSEPWSST-SGFVTGATWDPEGRMILLAFAGSL--TLGSIHF  307 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~-~dg----~v~iwd~~~~---~~~~~~~~-~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~  307 (427)
                      ....+|||||+.|+..+ .+|    .+.+|++..+   ........ ......++|+|||+.|++.+..++  .++.+++
T Consensus       233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            34568999998888433 333    3444776653   22223322 234567899999999998775544  3444444


Q ss_pred             CCCCCCccccccccccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                      ......            ...+. ....+...+|||||++|+.+......   ..|.+||+.++....++
T Consensus       313 ~~~g~~------------~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~---~~I~v~dl~~g~~~~Lt  367 (428)
T PRK01029        313 DPEGQS------------PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGV---RQICVYDLATGRDYQLT  367 (428)
T ss_pred             cccccc------------eEEeccCCCCccceeECCCCCEEEEEEcCCCC---cEEEEEECCCCCeEEcc
Confidence            221000            01111 12356788999999999986433222   45999999988765443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=3.4e-10  Score=100.78  Aligned_cols=195  Identities=19%  Similarity=0.246  Sum_probs=123.6

Q ss_pred             eEEEEccCCCceEEEe-cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC
Q 014302          147 KVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF  225 (427)
Q Consensus       147 ~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  225 (427)
                      ..++|+.+| ..|+++ .|++++||++.                         ....+  +                   
T Consensus       148 k~vaf~~~g-s~latgg~dg~lRv~~~P-------------------------s~~t~--l-------------------  180 (398)
T KOG0771|consen  148 KVVAFNGDG-SKLATGGTDGTLRVWEWP-------------------------SMLTI--L-------------------  180 (398)
T ss_pred             eEEEEcCCC-CEeeeccccceEEEEecC-------------------------cchhh--h-------------------
Confidence            789999999 566666 56999999975                         00111  0                   


Q ss_pred             cccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCC---CEEEEE-EcC
Q 014302          226 PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEG---RMILLA-FAG  298 (427)
Q Consensus       226 l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg---~~l~~~-~~~  298 (427)
                           ....|.+.|.++.|||||++|++-+.| ..+||+++++......   ........+.|+.|+   .+++++ ...
T Consensus       181 -----~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~  254 (398)
T KOG0771|consen  181 -----EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFP  254 (398)
T ss_pred             -----hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCC
Confidence                 122367789999999999999988888 9999999998664433   333456678888776   333322 233


Q ss_pred             Cceeeeee--eCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          299 SLTLGSIH--FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       299 ~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                      .+.+..++  +|.+...+.         ..+.......|++|+.|+||+++|+   |+.+   |.|.|++..+.+++...
T Consensus       255 ~~~v~~~~~~~w~~~~~l~---------~~~~~~~~~siSsl~VS~dGkf~Al---GT~d---GsVai~~~~~lq~~~~v  319 (398)
T KOG0771|consen  255 GGGVRLCDISLWSGSNFLR---------LRKKIKRFKSISSLAVSDDGKFLAL---GTMD---GSVAIYDAKSLQRLQYV  319 (398)
T ss_pred             CCceeEEEeeeeccccccc---------hhhhhhccCcceeEEEcCCCcEEEE---eccC---CcEEEEEeceeeeeEee
Confidence            33444433  344311110         0111223347999999999999999   5655   66999999988887655


Q ss_pred             eeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          377 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      +..+.    .  ....+.|.|+...  +.. ..++-++.+..
T Consensus       320 k~aH~----~--~VT~ltF~Pdsr~--~~s-vSs~~~~~v~~  352 (398)
T KOG0771|consen  320 KEAHL----G--FVTGLTFSPDSRY--LAS-VSSDNEAAVTK  352 (398)
T ss_pred             hhhhe----e--eeeeEEEcCCcCc--ccc-cccCCceeEEE
Confidence            43221    1  2447889987543  233 22444444443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=5.3e-10  Score=96.97  Aligned_cols=229  Identities=17%  Similarity=0.255  Sum_probs=144.3

Q ss_pred             ceeeeEEcCC--CCEEEEEeCCCeEEEEEccCCCCcceeeccCCc-CCeeEEEEccCCCceEEEecC-----CeEEEEec
Q 014302          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGCK-----GGICIWAP  172 (427)
Q Consensus       101 ~V~~l~~sp~--g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~-----~~i~iw~~  172 (427)
                      .++.++|..+  ...+.+++.||+|++||+............++. .+..+++-+-.+ +++++|..     -.+.+||+
T Consensus        72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDv  150 (376)
T KOG1188|consen   72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDV  150 (376)
T ss_pred             cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEe
Confidence            4667777653  457889999999999999887555555555555 466777776565 78888843     45779999


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccCce--------------------
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLGTP--------------------  231 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~--------------------  231 (427)
                      ..                        ..+.+..+...+...|+++.|+| +-+++.+|++                    
T Consensus       151 R~------------------------~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~  206 (376)
T KOG1188|consen  151 RS------------------------EQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH  206 (376)
T ss_pred             cc------------------------ccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence            71                        11224445544599999999999 4556665543                    


Q ss_pred             EEeccCCeEEEEEccCC-CEEEEEecCCcEEEEEcCCCCccccccC-------------CCCeeEEEECCCCCEEEEEEc
Q 014302          232 IRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSEPWSST-------------SGFVTGATWDPEGRMILLAFA  297 (427)
Q Consensus       232 ~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~~~~~~-------------~~~v~~v~~spdg~~l~~~~~  297 (427)
                      .-.+...|..+.|..++ +.|.+-+...+..+|++..+....+...             -..+...-...+....+.++.
T Consensus       207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~  286 (376)
T KOG1188|consen  207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT  286 (376)
T ss_pred             hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc
Confidence            01145668899998877 4577888899999999988775433311             111222211223444555544


Q ss_pred             CCceeeeeeeCCC-CCCccccccccccccceeec--cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          298 GSLTLGSIHFASK-PPSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       298 ~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      +.+...+..+.+. ......+.        ..+.  +..-|+++.|...+..|.+   |++|   |.+.+|..+
T Consensus       287 ~~n~~~~~~~~~~~s~~~~~~~--------a~l~g~~~eiVR~i~~~~~~~~l~T---GGED---G~l~~Wk~~  346 (376)
T KOG1188|consen  287 DSNKGTIFPLVDTSSGSLLTEP--------AILQGGHEEIVRDILFDVKNDVLYT---GGED---GLLQAWKVE  346 (376)
T ss_pred             ccCceeEEEeeecccccccCcc--------ccccCCcHHHHHHHhhhcccceeec---cCCC---ceEEEEecC
Confidence            4444444444432 11111110        1111  1125788899988888866   8998   889999964

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.24  E-value=6e-11  Score=108.48  Aligned_cols=137  Identities=18%  Similarity=0.317  Sum_probs=99.8

Q ss_pred             CceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCC-------------C-------------cceeeccCCcCCeeEEEEc
Q 014302          100 VDLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSG-------------K-------------DACILTSDSQRDVKVLEWR  152 (427)
Q Consensus       100 ~~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~-------------~-------------~~~~~~~~~~~~v~~l~~s  152 (427)
                      ..|+|+.|-|.+. .++++-.+|.+.+||.....             .             .++....--.+.|...+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            3899999999776 66667788999898753310             0             0000001123478899999


Q ss_pred             cCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceE
Q 014302          153 PNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPI  232 (427)
Q Consensus       153 p~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~  232 (427)
                      |||+.+..++.|+.++|++.+                         ...+..                          .+
T Consensus       300 ~DG~~LA~VSqDGfLRvF~fd-------------------------t~eLlg--------------------------~m  328 (636)
T KOG2394|consen  300 PDGKYLATVSQDGFLRIFDFD-------------------------TQELLG--------------------------VM  328 (636)
T ss_pred             CCCceEEEEecCceEEEeecc-------------------------HHHHHH--------------------------HH
Confidence            999555556677999999987                         101111                          23


Q ss_pred             EeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECC
Q 014302          233 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDP  287 (427)
Q Consensus       233 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~sp  287 (427)
                      +...++..|++|||||+||++|++|.-|.||.+...+...+- +|+.+|..|+|.|
T Consensus       329 kSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  329 KSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             HhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            335678999999999999999999999999999877775553 9999999999986

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=3.7e-09  Score=100.37  Aligned_cols=199  Identities=13%  Similarity=0.055  Sum_probs=113.9

Q ss_pred             ceeeeEEcCCCCE-EEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-C--eEEEEecc
Q 014302          101 DLQGVSWHQHKHI-VAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G--GICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~-lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~--~i~iw~~~  173 (427)
                      ......|+|||+. ++..+.+   ..|.++|+.++  +...+. ...+.+...+|+|||.+++.+... +  .|.++++.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg--~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG--KKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC--cEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            4567899999985 6654443   45777777655  333333 244556778999999766655543 3  34444443


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-  252 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-  252 (427)
                               .+              ....                             +..+........|+|||+.|+ 
T Consensus       266 ---------~g--------------~~~~-----------------------------LT~~~~~d~~p~~SPDG~~I~F  293 (419)
T PRK04043        266 ---------TK--------------TLTQ-----------------------------ITNYPGIDVNGNFVEDDKRIVF  293 (419)
T ss_pred             ---------CC--------------cEEE-----------------------------cccCCCccCccEECCCCCEEEE
Confidence                     11              1010                             100111122346999998888 


Q ss_pred             EEecCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC--------ceeeeeeeCCCCCCccccccccc
Q 014302          253 AAKFDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--------LTLGSIHFASKPPSLDAHLLPVD  322 (427)
Q Consensus       253 ~~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~  322 (427)
                      +....+  .|+++|+.+++..........  ...|||||++|++.....        ..|+++++....           
T Consensus       294 ~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-----------  360 (419)
T PRK04043        294 VSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-----------  360 (419)
T ss_pred             EECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-----------
Confidence            443444  477778877766444322222  358999999999877543        245555544331           


Q ss_pred             cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                         ...+...+......|+|||+.|+.+...+..   ..|.+.++......
T Consensus       361 ---~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~---~~L~~~~l~g~~~~  405 (419)
T PRK04043        361 ---IRRLTANGVNQFPRFSSDGGSIMFIKYLGNQ---SALGIIRLNYNKSF  405 (419)
T ss_pred             ---eEECCCCCCcCCeEECCCCCEEEEEEccCCc---EEEEEEecCCCeeE
Confidence               1111111223458899999999886433222   55778888665444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=3e-09  Score=98.36  Aligned_cols=270  Identities=14%  Similarity=0.175  Sum_probs=155.3

Q ss_pred             ceeeeEEcCCCCE-EEEEeCCCeEEEEEccCCCCcceeeccCCcC-CeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHI-VAFISGSTQVIVRDYEDSGKDACILTSDSQR-DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~-lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .-+.|..+|||++ ||+|..--.|++||+...   .......... .|.-.-.+-|-...+.--.|.+|.+-..-  |..
T Consensus        53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanL---SLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~--G~h  127 (703)
T KOG2321|consen   53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANL---SLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY--GRH  127 (703)
T ss_pred             ccceeEecCCCcEEEEecccCCceEEEEcccc---eeeeeecccccceeEEEeccchhhheEeecCceeeehhhc--Cee
Confidence            4567889999994 578888899999999876   2121112222 23333333333334444455555432211  000


Q ss_pred             cccccCcccccccccCCCCcc---eeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302          179 ASVRSGAASFLGALSRGPGTR---WTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK  255 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  255 (427)
                               ....+++.+..-   ......+-......|+.+-. ..|++|.   ++....++++++..++...+|++|+
T Consensus       128 ---------y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNL-EqGrfL~---P~~~~~~~lN~v~in~~hgLla~Gt  194 (703)
T KOG2321|consen  128 ---------YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNL-EQGRFLN---PFETDSGELNVVSINEEHGLLACGT  194 (703)
T ss_pred             ---------eeeecCcCCccccccCCCccEEEeecCcceEEEEc-ccccccc---ccccccccceeeeecCccceEEecc
Confidence                     000000000000   00000000001111111111 1244443   4454567899999999999999999


Q ss_pred             cCCcEEEEEcCCCCccccc-------cC-----CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-Cccccccccc
Q 014302          256 FDGTFYLWETNTWTSEPWS-------ST-----SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVD  322 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~-------~~-----~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~  322 (427)
                      .+|.|..||.+........       .+     ...|+++.|+.+|-.+++|++.+ .++++++....+ ....|...+ 
T Consensus       195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-~v~iyDLRa~~pl~~kdh~~e~-  272 (703)
T KOG2321|consen  195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-SVLIYDLRASKPLLVKDHGYEL-  272 (703)
T ss_pred             cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-cEEEEEcccCCceeecccCCcc-
Confidence            9999999999887642221       22     23499999999999999887666 778888877644 333443333 


Q ss_pred             cccceeeccCCceeEEEECCC--CCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          323 LPDIVSLTGSQGIEKIAWDAS--GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       323 ~~~~~~~~~~~~i~~v~~sp~--g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                                 +|..+.|-+.  +..|+++  +.     ..++|||-.++......     . +...  ...+++.|+  
T Consensus       273 -----------pi~~l~~~~~~~q~~v~S~--Dk-----~~~kiWd~~~Gk~~asi-----E-pt~~--lND~C~~p~--  324 (703)
T KOG2321|consen  273 -----------PIKKLDWQDTDQQNKVVSM--DK-----RILKIWDECTGKPMASI-----E-PTSD--LNDFCFVPG--  324 (703)
T ss_pred             -----------ceeeecccccCCCceEEec--ch-----HHhhhcccccCCceeec-----c-ccCC--cCceeeecC--
Confidence                       7899999765  4456553  43     46999999888765221     1 1222  235667776  


Q ss_pred             CCceeEEEeeCceEEEEec
Q 014302          401 QGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       401 ~g~~l~v~~~~g~i~~~~~  419 (427)
                       +-++-++..++.++.|-+
T Consensus       325 -sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  325 -SGMFFTANESSKMHTYYI  342 (703)
T ss_pred             -CceEEEecCCCcceeEEc
Confidence             446666778888877643

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=7.8e-09  Score=100.23  Aligned_cols=212  Identities=16%  Similarity=0.273  Sum_probs=144.0

Q ss_pred             eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcc--eeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      .++.+++.|++.+... +..+.+|......+..  ......|...+++.++||++ +++|+|. +|.|.+|.-- .    
T Consensus       164 ~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~-~----  236 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDF-G----  236 (792)
T ss_pred             ccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEecc-c----
Confidence            5788899888776664 4567788877752111  11223477779999999999 7777774 5999999743 0    


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                                                .. ......+.+.|               |...|.+++|+++|.+|++|+..+.
T Consensus       237 --------------------------~~-~~~~t~t~lHW---------------H~~~V~~L~fS~~G~~LlSGG~E~V  274 (792)
T KOG1963|consen  237 --------------------------SS-DDSETCTLLHW---------------HHDEVNSLSFSSDGAYLLSGGREGV  274 (792)
T ss_pred             --------------------------cc-cccccceEEEe---------------cccccceeEEecCCceEeecccceE
Confidence                                      00 11444556666               5568999999999999999999999


Q ss_pred             EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccCCceeE
Q 014302          260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEK  337 (427)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~  337 (427)
                      +.+|.+.+++...+.-..+.|..+.+|||+.+.+....+. .|..++..+...  ++.+-..+.  ++. .....+-.+.
T Consensus       275 Lv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN-qI~li~~~dl~~k~tIsgi~~~~--~~~-k~~~~~l~t~  350 (792)
T KOG1963|consen  275 LVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDN-QIHLIKASDLEIKSTISGIKPPT--PST-KTRPQSLTTG  350 (792)
T ss_pred             EEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCc-eEEEEeccchhhhhhccCccCCC--ccc-ccccccccee
Confidence            9999999999655557788999999999999888766554 777777765321  111111110  000 0001124578


Q ss_pred             EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ++++|.-+-++.+  +-.    |+|.+||+.+...+
T Consensus       351 ~~idpr~~~~vln--~~~----g~vQ~ydl~td~~i  380 (792)
T KOG1963|consen  351 VSIDPRTNSLVLN--GHP----GHVQFYDLYTDSTI  380 (792)
T ss_pred             EEEcCCCCceeec--CCC----ceEEEEecccccee
Confidence            8999966666653  332    78999999765543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.22  E-value=1.1e-07  Score=83.84  Aligned_cols=265  Identities=15%  Similarity=0.231  Sum_probs=157.9

Q ss_pred             ceeeeEEcCCCCEEEEEeC---CCeEEEEEccCCCCcceeecc--CCcCCeeEEEEccCCCceEEEecC--CeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSGKDACILTS--DSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~---d~~v~vwd~~~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~la~g~~--~~i~iw~~~  173 (427)
                      ..+-|+|+|++++|.++-.   +|.|-.|.++........+..  ....+-+.++.++++ ++|.++..  +.|.++-++
T Consensus        41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~  119 (346)
T COG2706          41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQ  119 (346)
T ss_pred             CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCC-CEEEEEEccCceEEEEEcc
Confidence            5788999999998887744   477888888764112222111  122233789999999 66666654  888899887


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                      ..|...                     ..++.+.+.            .     .+.-.+.-...+....+.|++++|++
T Consensus       120 ~dG~l~---------------------~~v~~~~h~------------g-----~~p~~rQ~~~h~H~a~~tP~~~~l~v  161 (346)
T COG2706         120 ADGSLQ---------------------PVVQVVKHT------------G-----SGPHERQESPHVHSANFTPDGRYLVV  161 (346)
T ss_pred             cCCccc---------------------cceeeeecC------------C-----CCCCccccCCccceeeeCCCCCEEEE
Confidence            322210                     111111111            0     00001111233677889999999996


Q ss_pred             Eec-CCcEEEEEcCCCCcccc----ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee
Q 014302          254 AKF-DGTFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS  328 (427)
Q Consensus       254 ~~~-dg~v~iwd~~~~~~~~~----~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      ..- --.|.+|++..++....    ......-..+.|+|++++..+.++-++++-+|........++.-.....+++  .
T Consensus       162 ~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~--d  239 (346)
T COG2706         162 PDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE--D  239 (346)
T ss_pred             eecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc--c
Confidence            543 45699999987665322    2556677899999999999988888888888888775332221111011111  2


Q ss_pred             eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC-ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEE
Q 014302          329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV  407 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v  407 (427)
                      +.+.....++..+|||++|.++-.+-+     .|.+|.+... ..+.  ..+.....+.  .|-.+.|.+.   |.+|.+
T Consensus       240 F~g~~~~aaIhis~dGrFLYasNRg~d-----sI~~f~V~~~~g~L~--~~~~~~teg~--~PR~F~i~~~---g~~Lia  307 (346)
T COG2706         240 FTGTNWAAAIHISPDGRFLYASNRGHD-----SIAVFSVDPDGGKLE--LVGITPTEGQ--FPRDFNINPS---GRFLIA  307 (346)
T ss_pred             cCCCCceeEEEECCCCCEEEEecCCCC-----eEEEEEEcCCCCEEE--EEEEeccCCc--CCccceeCCC---CCEEEE
Confidence            334457789999999999999644443     4888888532 2221  1122222222  2556667664   555554


Q ss_pred             Eee-CceEEEEe
Q 014302          408 CWS-SGFCCTYP  418 (427)
Q Consensus       408 ~~~-~g~i~~~~  418 (427)
                      ... +..|.+|.
T Consensus       308 a~q~sd~i~vf~  319 (346)
T COG2706         308 ANQKSDNITVFE  319 (346)
T ss_pred             EccCCCcEEEEE
Confidence            443 44566654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=3.8e-09  Score=104.22  Aligned_cols=252  Identities=17%  Similarity=0.227  Sum_probs=149.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec---cCCcCCeeEEEEccC--CCceEEEecCCeEEEEeccCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~--~~~~la~g~~~~i~iw~~~~~  175 (427)
                      .-..+.|+|-...++++.....|+|||++.+  ....-+   ......|+++.+-.+  ...+|++.+||.|+||+--.+
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            4567889999999999988889999999877  121111   124457888888643  223566667799999975411


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK  255 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  255 (427)
                      +.                    +..+.             --+|++-..      .+....+.-.-+.|.....+|++++
T Consensus      1144 ~~--------------------~~~eL-------------VTaw~~Ls~------~~~~~r~~~~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1144 KW--------------------KKPEL-------------VTAWSSLSD------QLPGARGTGLVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred             cc--------------------CCcee-------------EEeeccccc------cCccCCCCCeeeehhhhCCeEEecC
Confidence            10                    00011             112322100      0111111224577988888888777


Q ss_pred             cCCcEEEEEcCCCCccccc--cCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCCCC-----Cccccccccccccce
Q 014302          256 FDGTFYLWETNTWTSEPWS--STSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPP-----SLDAHLLPVDLPDIV  327 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~  327 (427)
                      .-..|+|||.....+..-.  .....++++.-+- .|+.++.|..++ .++.++..-...     .+..|...       
T Consensus      1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDG-svRvyD~R~a~~ds~v~~~R~h~~~------- 1256 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADG-SVRVYDRRMAPPDSLVCVYREHNDV------- 1256 (1387)
T ss_pred             CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCC-ceEEeecccCCccccceeecccCCc-------
Confidence            7899999999876653222  3445566654432 367777665544 555555443211     11112111       


Q ss_pred             eeccCCceeEEEECCCCCE-EEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCC-CceeEEeccCCCCCcee
Q 014302          328 SLTGSQGIEKIAWDASGER-LAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP-KPVAFSFHDKFKQGPLL  405 (427)
Q Consensus       328 ~~~~~~~i~~v~~sp~g~~-La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~g~~l  405 (427)
                           .+|..+.+.+.|-. |++   |+.+   |.|++||++.......  ... ..+.++. ...++..|+.   ..++
T Consensus      1257 -----~~Iv~~slq~~G~~elvS---gs~~---G~I~~~DlR~~~~e~~--~~i-v~~~~yGs~lTal~VH~h---apii 1319 (1387)
T KOG1517|consen 1257 -----EPIVHLSLQRQGLGELVS---GSQD---GDIQLLDLRMSSKETF--LTI-VAHWEYGSALTALTVHEH---APII 1319 (1387)
T ss_pred             -----ccceeEEeecCCCcceee---eccC---CeEEEEecccCccccc--cee-eeccccCccceeeeeccC---CCee
Confidence                 13888889886655 666   6666   7799999987532211  111 1122222 1446777764   6788


Q ss_pred             EEEeeCceEEEEec
Q 014302          406 SVCWSSGFCCTYPL  419 (427)
Q Consensus       406 ~v~~~~g~i~~~~~  419 (427)
                      |.|.. +.|.+|++
T Consensus      1320 AsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1320 ASGSA-QLIKIYSL 1332 (1387)
T ss_pred             eecCc-ceEEEEec
Confidence            98866 99999985

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=1.5e-09  Score=100.15  Aligned_cols=220  Identities=13%  Similarity=0.223  Sum_probs=147.8

Q ss_pred             cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEe
Q 014302          140 SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW  219 (427)
Q Consensus       140 ~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  219 (427)
                      ..|...|+.++|.|-...++.+.-++.+++|+++...                 +..+..+.++                
T Consensus       291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~-----------------~s~~~~~epi----------------  337 (577)
T KOG0642|consen  291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK-----------------KSAEKDVEPI----------------  337 (577)
T ss_pred             ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC-----------------Cccccceeee----------------
Confidence            3477889999999988556665666999999996100                 0000111111                


Q ss_pred             CCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-----------cccccCCCCeeEEEECCC
Q 014302          220 GPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----------EPWSSTSGFVTGATWDPE  288 (427)
Q Consensus       220 spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~v~~v~~spd  288 (427)
                                -.++.|.++|.|++.+++++.+++|+.||+|+.|++....-           ..+.+|...+..+++|+.
T Consensus       338 ----------~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~  407 (577)
T KOG0642|consen  338 ----------LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST  407 (577)
T ss_pred             ----------EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc
Confidence                      14677899999999999999999999999999997763221           234489999999999998


Q ss_pred             CCEEEEEEcCCceeeeeeeCCCCC-Cc---ccccccc--cccc-------------------------ceee-----cc-
Q 014302          289 GRMILLAFAGSLTLGSIHFASKPP-SL---DAHLLPV--DLPD-------------------------IVSL-----TG-  331 (427)
Q Consensus       289 g~~l~~~~~~~~~i~~~~~~~~~~-~~---~~~~~~~--~~~~-------------------------~~~~-----~~-  331 (427)
                      ...|+++ +.+++++.|......+ ++   ..+..|.  +...                         ...+     .+ 
T Consensus       408 ~~~Llsc-s~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~  486 (577)
T KOG0642|consen  408 KDRLLSC-SSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGP  486 (577)
T ss_pred             ccceeee-cCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcc
Confidence            8888865 4555888887665422 11   1111111  0000                         0000     01 


Q ss_pred             --CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe
Q 014302          332 --SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW  409 (427)
Q Consensus       332 --~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~  409 (427)
                        ...+..+.++|.+.....   +.++   +.|+++|..++.++...    + .  ......++++.|+   |.-|+.|.
T Consensus       487 ~~~~~in~vVs~~~~~~~~~---~hed---~~Ir~~dn~~~~~l~s~----~-a--~~~svtslai~~n---g~~l~s~s  550 (577)
T KOG0642|consen  487 RRYPQINKVVSHPTADITFT---AHED---RSIRFFDNKTGKILHSM----V-A--HKDSVTSLAIDPN---GPYLMSGS  550 (577)
T ss_pred             cccCccceEEecCCCCeeEe---cccC---Cceecccccccccchhe----e-e--ccceecceeecCC---CceEEeec
Confidence              125788899999988766   7777   66999999988765211    1 1  1122457889887   77899999


Q ss_pred             eCceEEEEec
Q 014302          410 SSGFCCTYPL  419 (427)
Q Consensus       410 ~~g~i~~~~~  419 (427)
                      .||++.++.+
T Consensus       551 ~d~sv~l~kl  560 (577)
T KOG0642|consen  551 HDGSVRLWKL  560 (577)
T ss_pred             CCceeehhhc
Confidence            9999998865

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.16  E-value=2.1e-08  Score=100.55  Aligned_cols=262  Identities=11%  Similarity=0.038  Sum_probs=149.3

Q ss_pred             ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCCCCc-----ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302          101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKD-----ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~  174 (427)
                      .|..++.++.. .++++|+.||+|++|+.......     ....+......+.++.+.+.++.+.+++.||.|++.+++.
T Consensus      1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDH 1129 (1431)
T ss_pred             cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccc
Confidence            66677776655 89999999999999998765222     1122233567899999999995555555669999999871


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEE-EEcc-CC-CEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSIL-KWSP-TG-DYF  251 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~-~~sp-~g-~~l  251 (427)
                      .+.    ...              ........+.+                         ..+.+.+| ++.. .+ ..|
T Consensus      1130 ~~~----~~~--------------~~~~~ri~n~~-------------------------~~g~vv~m~a~~~~~~S~~l 1166 (1431)
T KOG1240|consen 1130 YNV----SKR--------------VATQVRIPNLK-------------------------KDGVVVSMHAFTAIVQSHVL 1166 (1431)
T ss_pred             ccc----ccc--------------eeeeeeccccc-------------------------CCCceEEeecccccccceeE
Confidence            000    000              00000000000                         11122222 2221 22 357


Q ss_pred             EEEecCCcEEEEEcCCCCcc---ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee
Q 014302          252 FAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS  328 (427)
Q Consensus       252 ~~~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      +.+..-+.|..||+++....   +.....+.|++++.+|.+.+++.|++.+ .+-.|++.=+.+...     +.      
T Consensus      1167 vy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G-~l~lWDLRF~~~i~s-----w~------ 1234 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG-QLVLWDLRFRVPILS-----WE------ 1234 (1431)
T ss_pred             EEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCc-eEEEEEeecCceeec-----cc------
Confidence            78888999999999887652   2235668899999999999999887666 566666543321110     00      


Q ss_pred             eccCCceeEEEECCC---CCEEEEEEe-cCCCcceeEEEEEEeccCceEEEeeee----eee-C-CCC-C--CCceeEEe
Q 014302          329 LTGSQGIEKIAWDAS---GERLAVSYK-GGDDIYKGLIAIYDARRTPLISLSLIG----FIR-G-PGD-N--PKPVAFSF  395 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~---g~~La~~~~-~~~d~~~g~i~vwd~~~~~~~~~~~~~----~~~-~-~~~-~--~~~~~~~f  395 (427)
                      .....+|..|..+|.   ..+.+++.. +.     +-|.+|++.++.+....-.+    .+. . +.+ .  ...++.-+
T Consensus      1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~-----nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~ 1309 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSN-----NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGIS 1309 (1431)
T ss_pred             CcccCCcceEEeeccCCCCceEEEecccCC-----CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCccccee
Confidence            111126666666643   346655432 33     34999999988664332211    000 0 000 0  00111111


Q ss_pred             ccCCCCCceeEEEeeCceEEEEecccc
Q 014302          396 HDKFKQGPLLSVCWSSGFCCTYPLIFR  422 (427)
Q Consensus       396 ~~~~~~g~~l~v~~~~g~i~~~~~~~~  422 (427)
                      ..-...+.++..|-+|++|..|+.-++
T Consensus      1310 ~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1310 CGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             eecccCCceeeecCCccceeeccCCCc
Confidence            111123557777879999999997655

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.14  E-value=1.6e-08  Score=94.31  Aligned_cols=257  Identities=15%  Similarity=0.183  Sum_probs=135.8

Q ss_pred             eeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEEeccCCCCcccc
Q 014302          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPGNAASV  181 (427)
Q Consensus       104 ~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw~~~~~~~~~~~  181 (427)
                      .+.|+|||+++.+++.|+.|.++|+.+.  +..... .-.....++++|+|| +++++++  .+.+.++|..        
T Consensus        41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i-~~G~~~~~i~~s~DG-~~~~v~n~~~~~v~v~D~~--------  108 (369)
T PF02239_consen   41 GLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATI-KVGGNPRGIAVSPDG-KYVYVANYEPGTVSVIDAE--------  108 (369)
T ss_dssp             EEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEE-E-SSEEEEEEE--TT-TEEEEEEEETTEEEEEETT--------
T ss_pred             EEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEE-ecCCCcceEEEcCCC-CEEEEEecCCCceeEeccc--------
Confidence            4679999999999999999999999887  332222 223457889999999 5555553  3999999987        


Q ss_pred             ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE-ecCCcE
Q 014302          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTF  260 (427)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v  260 (427)
                                       ....++.+...        ....++           ....+..+.-+|....++.. -+.+.|
T Consensus       109 -----------------tle~v~~I~~~--------~~~~~~-----------~~~Rv~aIv~s~~~~~fVv~lkd~~~I  152 (369)
T PF02239_consen  109 -----------------TLEPVKTIPTG--------GMPVDG-----------PESRVAAIVASPGRPEFVVNLKDTGEI  152 (369)
T ss_dssp             -----------------T--EEEEEE----------EE-TTT-----------S---EEEEEE-SSSSEEEEEETTTTEE
T ss_pred             -----------------cccceeecccc--------cccccc-----------cCCCceeEEecCCCCEEEEEEccCCeE
Confidence                             11222222111        000000           12356677778888866644 445888


Q ss_pred             EEEEcCCCCcc--ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cc----c---------ccccc---
Q 014302          261 YLWETNTWTSE--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SL----D---------AHLLP---  320 (427)
Q Consensus       261 ~iwd~~~~~~~--~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~----~---------~~~~~---  320 (427)
                      .+.|....+..  .............|+|++++++.+......+..++......  .+    .         .|...   
T Consensus       153 ~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v  232 (369)
T PF02239_consen  153 WVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV  232 (369)
T ss_dssp             EEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE
T ss_pred             EEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceE
Confidence            88887766542  23355667788999999999988776666666665544210  00    0         00000   


Q ss_pred             ------------------c---c---cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          321 ------------------V---D---LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       321 ------------------~---~---~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                                        +   +   ......+...+.-.-+..+|++++|.+...-+.+  ..+|.|+|.++.+.....
T Consensus       233 w~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~--~~~v~viD~~tl~~~~~i  310 (369)
T PF02239_consen  233 WATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPD--ADTVQVIDKKTLKVVKTI  310 (369)
T ss_dssp             EEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SS--HT-EEEEECCGTEEEE-H
T ss_pred             EeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCC--CceEEEEECcCcceeEEE
Confidence                              0   0   0001112222222667789999999995222333  267999999988654221


Q ss_pred             eeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc-eEEEEe
Q 014302          377 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG-FCCTYP  418 (427)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g-~i~~~~  418 (427)
                      ..    +  ....++.+.|.++  ...++...|... +|.+|+
T Consensus       311 ~~----~--~~~~~~h~ef~~d--G~~v~vS~~~~~~~i~v~D  345 (369)
T PF02239_consen  311 TP----G--PGKRVVHMEFNPD--GKEVWVSVWDGNGAIVVYD  345 (369)
T ss_dssp             HH----H--HT--EEEEEE-TT--SSEEEEEEE--TTEEEEEE
T ss_pred             ec----c--CCCcEeccEECCC--CCEEEEEEecCCCEEEEEE
Confidence            10    1  1112667788776  233444455544 999997

...

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=3.1e-09  Score=100.65  Aligned_cols=268  Identities=18%  Similarity=0.276  Sum_probs=160.6

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-------------cceeeccCCcCCeeEEEEccCCCceEEEecC-C
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-------------DACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G  165 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-------------~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~  165 (427)
                      ....|++|+....+||+|+.||.++|-.+.+...             ..-....+|...|..+.|+.+. +-|.++.. |
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~G   93 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTSG   93 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCCc
Confidence            3669999999999999999999999987765411             0112335799999999999877 55565554 7


Q ss_pred             eEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc----cCceEEe-------
Q 014302          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG----LGTPIRR-------  234 (427)
Q Consensus       166 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~----~~~~~~~-------  234 (427)
                      -|.+|.+-                       ++. .+-..+..+..+.|.+++|+.||..+.    .|.++-+       
T Consensus        94 lIiVWmly-----------------------kgs-W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI  149 (1189)
T KOG2041|consen   94 LIIVWMLY-----------------------KGS-WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI  149 (1189)
T ss_pred             eEEEEeee-----------------------ccc-HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee
Confidence            78899885                       112 223345566688899999999998743    1222111       


Q ss_pred             -----ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc------------ccCCCCeeEEEEC--------CCC
Q 014302          235 -----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW------------SSTSGFVTGATWD--------PEG  289 (427)
Q Consensus       235 -----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~------------~~~~~~v~~v~~s--------pdg  289 (427)
                           .......+.||+|.+.++.+-..|.+.+||.+..-..+.            ......+..++|.        ||-
T Consensus       150 wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr  229 (1189)
T KOG2041|consen  150 WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR  229 (1189)
T ss_pred             cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence                 112234677999999888888889999999864322111            1222335666764        456


Q ss_pred             CEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          290 RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       290 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ..|+++-.++ ...+.+-.+.+       .|+      .+..+-.|....|+++|..||+|  |...     -..=+..+
T Consensus       230 P~lavcy~nG-r~QiMR~eND~-------~Pv------v~dtgm~~vgakWnh~G~vLAvc--G~~~-----da~~~~d~  288 (1189)
T KOG2041|consen  230 PRLAVCYANG-RMQIMRSENDP-------EPV------VVDTGMKIVGAKWNHNGAVLAVC--GNDS-----DADEPTDS  288 (1189)
T ss_pred             CEEEEEEcCc-eehhhhhcCCC-------CCe------EEecccEeecceecCCCcEEEEc--cCcc-----cccCcccc
Confidence            6676654444 33222222110       111      11122367889999999999997  4321     01112222


Q ss_pred             CceEEEeeee----eeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          370 TPLISLSLIG----FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       370 ~~~~~~~~~~----~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      +.+.-.+|.|    +++.++....  .++|...   |--+|++ .|+.|.|-.+
T Consensus       289 n~v~Fysp~G~i~gtlkvpg~~It--~lsWEg~---gLriA~A-vdsfiyfanI  336 (1189)
T KOG2041|consen  289 NKVHFYSPYGHIVGTLKVPGSCIT--GLSWEGT---GLRIAIA-VDSFIYFANI  336 (1189)
T ss_pred             ceEEEeccchhheEEEecCCceee--eeEEcCC---ceEEEEE-ecceEEEEee
Confidence            3333334443    4444444432  4556543   4445555 6777766543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.10  E-value=5.5e-10  Score=107.28  Aligned_cols=223  Identities=15%  Similarity=0.134  Sum_probs=146.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|+.++.+.+..++|+++.|..|+||-+..+  .++.+..+|.+.|++++|+|--    +++.+|++++||....-....
T Consensus       234 ditdlavs~~n~~iaaaS~D~vIrvWrl~~~--~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~  307 (1113)
T KOG0644|consen  234 DITDLAVSSNNTMIAAASNDKVIRVWRLPDG--APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYV  307 (1113)
T ss_pred             ccchhccchhhhhhhhcccCceEEEEecCCC--chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccC
Confidence            8999999999999999999999999999888  6777888999999999999975    566779999999862111000


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceE---Ee--------ccCCeEEEEEccCC-
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPI---RR--------GFGGLSILKWSPTG-  248 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~---~~--------~~~~v~~~~~sp~g-  248 (427)
                      .++                      ++.....-+.++.|...+....++..-   +.        +...+..+..+.+- 
T Consensus       308 prp----------------------~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~  365 (1113)
T KOG0644|consen  308 PRP----------------------LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLS  365 (1113)
T ss_pred             CCC----------------------CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccc
Confidence            000                      000011222233333333222222110   00        11111122222222 


Q ss_pred             CEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce
Q 014302          249 DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV  327 (427)
Q Consensus       249 ~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
                      .+.+++-.+-.+.+|++.++... ...+|...+..+.++|-+..++.....++...+|++|...+.            ..
T Consensus       366 ~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi------------k~  433 (1113)
T KOG0644|consen  366 SIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI------------KH  433 (1113)
T ss_pred             ccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc------------ee
Confidence            23445556777899999888764 444899999999999999888887788888999999986321            11


Q ss_pred             eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          328 SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       328 ~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ...+++.+..-+||+||..++.+  +. .   |.++|.....
T Consensus       434 y~~gh~kl~d~kFSqdgts~~ls--d~-h---gql~i~g~gq  469 (1113)
T KOG0644|consen  434 YFIGHGKLVDGKFSQDGTSIALS--DD-H---GQLYILGTGQ  469 (1113)
T ss_pred             eecccceeeccccCCCCceEecC--CC-C---CceEEeccCC
Confidence            12234567788999999999773  22 2   6688876643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=7.1e-08  Score=91.72  Aligned_cols=124  Identities=11%  Similarity=0.066  Sum_probs=77.1

Q ss_pred             eEEEEEccCCCEEE-EEecC--CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCC
Q 014302          239 LSILKWSPTGDYFF-AAKFD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPS  313 (427)
Q Consensus       239 v~~~~~sp~g~~l~-~~~~d--g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~  313 (427)
                      .....|||||+.|+ +.+.+  ..|+++|+.+++...+..+........|+|||+.|++.+...+  .|+.+++..... 
T Consensus       235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~-  313 (419)
T PRK04043        235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV-  313 (419)
T ss_pred             EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe-
Confidence            44567899998777 44434  4588888877766555544444556789999999998876543  566666654321 


Q ss_pred             ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCc---ceeEEEEEEeccCceEEEee
Q 014302          314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI---YKGLIAIYDARRTPLISLSL  377 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~---~~g~i~vwd~~~~~~~~~~~  377 (427)
                                   ..+...+. ....|||||++||.+....+..   ....|.+.|+.++....++.
T Consensus       314 -------------~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~  366 (419)
T PRK04043        314 -------------EQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA  366 (419)
T ss_pred             -------------EeCccCCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC
Confidence                         00000011 1248999999999865432110   11358889998887665543

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.10  E-value=3e-08  Score=92.48  Aligned_cols=195  Identities=17%  Similarity=0.227  Sum_probs=120.8

Q ss_pred             CEE-EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccc
Q 014302          112 HIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG  190 (427)
Q Consensus       112 ~~l-at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~  190 (427)
                      +++ ++-..++.|.|.|..+.  +...........-..+.|+|||.++++++.++.|.++|+.         +.      
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~--~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~---------~~------   68 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATN--KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA---------TG------   68 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT---SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT---------SS------
T ss_pred             cEEEEEecCCCEEEEEECCCC--eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC---------cc------
Confidence            344 44556899999887765  3333332222223457899999767777777999999997         11      


Q ss_pred             cccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE-ecCCcEEEEEcCCCC
Q 014302          191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWT  269 (427)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~  269 (427)
                                +.+..                          ++ .......+++|+||++++++ ..++.+.++|.++.+
T Consensus        69 ----------~~v~~--------------------------i~-~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle  111 (369)
T PF02239_consen   69 ----------KVVAT--------------------------IK-VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE  111 (369)
T ss_dssp             ----------SEEEE--------------------------EE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--
T ss_pred             ----------cEEEE--------------------------Ee-cCCCcceEEEcCCCCEEEEEecCCCceeEecccccc
Confidence                      12221                          11 12345679999999999955 578999999999988


Q ss_pred             ccccc--------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEEC
Q 014302          270 SEPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD  341 (427)
Q Consensus       270 ~~~~~--------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  341 (427)
                      .....        .....+.++.-+|....++++..+.+.++.+++.+... +.          ...+..........|+
T Consensus       112 ~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~----------~~~i~~g~~~~D~~~d  180 (369)
T PF02239_consen  112 PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-LK----------VTTIKVGRFPHDGGFD  180 (369)
T ss_dssp             EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-EE----------EEEEE--TTEEEEEE-
T ss_pred             ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-cc----------eeeecccccccccccC
Confidence            64432        13456788888999987777777777888887766421 10          1122223356788999


Q ss_pred             CCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          342 ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       342 p~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                      |+++|++++..+++     .|.++|.+++.++...
T Consensus       181 pdgry~~va~~~sn-----~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  181 PDGRYFLVAANGSN-----KIAVIDTKTGKLVALI  210 (369)
T ss_dssp             TTSSEEEEEEGGGT-----EEEEEETTTTEEEEEE
T ss_pred             cccceeeecccccc-----eeEEEeeccceEEEEe
Confidence            99999988655554     4999999888776543

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=1.1e-08  Score=90.38  Aligned_cols=210  Identities=14%  Similarity=0.117  Sum_probs=135.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC--CcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~  175 (427)
                      .|..++..  ...|.+|-.+|.+++|....+.  ....... ....++..+.-++..+.++|+|+.   +-+.|||++. 
T Consensus       107 ~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~-  182 (412)
T KOG3881|consen  107 SIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQ-  182 (412)
T ss_pred             cccchhhc--CCEEEEEecCCcEEEEeccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeeccc-
Confidence            44444432  2367777889999999988551  1122222 223568888888888889997765   5678999971 


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC--CCEEEE
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT--GDYFFA  253 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~--g~~l~~  253 (427)
                                                ..+.+...         --| ..+|..  .++   -.++.+.|-+.  ...||+
T Consensus       183 --------------------------~~qiw~aK---------Nvp-nD~L~L--rVP---vW~tdi~Fl~g~~~~~fat  221 (412)
T KOG3881|consen  183 --------------------------SKQIWSAK---------NVP-NDRLGL--RVP---VWITDIRFLEGSPNYKFAT  221 (412)
T ss_pred             --------------------------ceeeeecc---------CCC-Cccccc--eee---eeeccceecCCCCCceEEE
Confidence                                      11111111         000 011110  011   13445667666  778999


Q ss_pred             EecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302          254 AKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  331 (427)
Q Consensus       254 ~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (427)
                      ++.-+.||+||.+.+..  ..+......++++...|+|+.++++. ..+.+..+++..+..  -++.         .-..
T Consensus       222 ~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~~kl--~g~~---------~kg~  289 (412)
T KOG3881|consen  222 ITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN-TKGQLAKFDLRGGKL--LGCG---------LKGI  289 (412)
T ss_pred             EecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec-ccchhheecccCcee--eccc---------cCCc
Confidence            99999999999996665  23336678999999999999988764 444677777666421  0110         1112


Q ss_pred             CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      .|.|+++..+|.+++||+   ++-|++   |+|+|+++..++
T Consensus       290 tGsirsih~hp~~~~las---~GLDRy---vRIhD~ktrkll  325 (412)
T KOG3881|consen  290 TGSIRSIHCHPTHPVLAS---CGLDRY---VRIHDIKTRKLL  325 (412)
T ss_pred             cCCcceEEEcCCCceEEe---ecccee---EEEeecccchhh
Confidence            358999999999999999   567754   999999986554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.08  E-value=2.3e-08  Score=87.07  Aligned_cols=260  Identities=14%  Similarity=0.175  Sum_probs=153.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc---ceeeccCC------------cCCeeEEEEccCCC--ceEEEec
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD---ACILTSDS------------QRDVKVLEWRPNGG--RSLSVGC  163 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~---~~~~~~~~------------~~~v~~l~~sp~~~--~~la~g~  163 (427)
                      -|.++.|...|.+||+|..+|.|.++.-+.....   .......|            ...|..++|.+++.  .+|.++.
T Consensus        27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN  106 (433)
T KOG1354|consen   27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN  106 (433)
T ss_pred             ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence            5789999999999999999999999765544211   11111112            34688999998764  3788889


Q ss_pred             CCeEEEEeccCCCCccc----cccCccccccc--cc----CCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEE
Q 014302          164 KGGICIWAPSYPGNAAS----VRSGAASFLGA--LS----RGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIR  233 (427)
Q Consensus       164 ~~~i~iw~~~~~~~~~~----~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~  233 (427)
                      +.+|++|.+...+....    ...++......  ++    .+...+..+.+.+...+...|.+++++.|++...+..-++
T Consensus       107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLR  186 (433)
T KOG1354|consen  107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLR  186 (433)
T ss_pred             CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecccee
Confidence            99999999873322110    00111111111  11    1122234455566655577788999999988644332211


Q ss_pred             e------------------------ccCCeEEEEEccCC-CEEEEEecCCcEEEEEcCCCCc-----ccc----------
Q 014302          234 R------------------------GFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS-----EPW----------  273 (427)
Q Consensus       234 ~------------------------~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~-----~~~----------  273 (427)
                      .                        ...-|++..|+|.. ..++.++..|+|++-|++....     ..+          
T Consensus       187 INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rs  266 (433)
T KOG1354|consen  187 INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRS  266 (433)
T ss_pred             eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchh
Confidence            1                        11236667788855 4555777799999999984321     111          


Q ss_pred             --ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC--CC-CccccccccccccceeeccCC---ceeEEEECCCCC
Q 014302          274 --SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK--PP-SLDAHLLPVDLPDIVSLTGSQ---GIEKIAWDASGE  345 (427)
Q Consensus       274 --~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~---~i~~v~~sp~g~  345 (427)
                        ...-..|..+.|+++|+++++  .+-.++.+|++.-.  +. ++.-|...  ..+...+....   .-..++|+.++.
T Consensus       267 ffseiIsSISDvKFs~sGryils--RDyltvk~wD~nme~~pv~t~~vh~~l--r~kLc~lYEnD~IfdKFec~~sg~~~  342 (433)
T KOG1354|consen  267 FFSEIISSISDVKFSHSGRYILS--RDYLTVKLWDLNMEAKPVETYPVHEYL--RSKLCSLYENDAIFDKFECSWSGNDS  342 (433)
T ss_pred             hHHHHhhhhhceEEccCCcEEEE--eccceeEEEeccccCCcceEEeehHhH--HHHHHHHhhccchhheeEEEEcCCcc
Confidence              123357889999999999985  44447777777432  11 11111110  00111111111   235789999999


Q ss_pred             EEEEEEecCCCcceeEEEEEEeccC
Q 014302          346 RLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       346 ~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      ++++   |+-.   ..+++|++..+
T Consensus       343 ~v~T---Gsy~---n~frvf~~~~g  361 (433)
T KOG1354|consen  343 YVMT---GSYN---NVFRVFNLARG  361 (433)
T ss_pred             eEec---cccc---ceEEEecCCCC
Confidence            9988   6544   34888885433

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=9.1e-08  Score=88.61  Aligned_cols=258  Identities=17%  Similarity=0.218  Sum_probs=148.4

Q ss_pred             ceeeeEEcCCCCEEEEE-----eC-----CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302          101 DLQGVSWHQHKHIVAFI-----SG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-----~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw  170 (427)
                      .++++.|||-|.+|.+-     ..     .-.+++|++.+. .....+....+.. +++.|++|. .+.|--..+.+++|
T Consensus        75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~-~~~s~~q~k~Q~~-W~~qfs~dE-sl~arlv~nev~f~  151 (566)
T KOG2315|consen   75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG-VQRSQIQKKMQNG-WVPQFSIDE-SLAARLVSNEVQFY  151 (566)
T ss_pred             eeeeeeecccccccccccccccccCCCCCCCceeeeeeccc-eehhheehhhhcC-cccccccch-hhhhhhhcceEEEE
Confidence            68899999999998774     11     235679998874 2222222223333 689999987 55544455789999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC--cc------cCce--EE-------
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF--PG------LGTP--IR-------  233 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--l~------~~~~--~~-------  233 (427)
                      +... .+                       .....+   +...++.+.++|.+..  ++      .|.+  ++       
T Consensus       152 ~~~~-f~-----------------------~~~~kl---~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  152 DLGS-FK-----------------------TIQHKL---SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             ecCC-cc-----------------------ceeeee---eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            8861 00                       000001   1444555666655332  11      0000  00       


Q ss_pred             ---------e-ccCCeEEEEEccCCCEEE---EEecCC---------cEEEEEcCCCCccccccCCCCeeEEEECCCCCE
Q 014302          234 ---------R-GFGGLSILKWSPTGDYFF---AAKFDG---------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRM  291 (427)
Q Consensus       234 ---------~-~~~~v~~~~~sp~g~~l~---~~~~dg---------~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~  291 (427)
                               . ....--.+.|.+-|.-|+   +..-|.         ++++++++...+..-....++|.+++|+|+|+.
T Consensus       205 ~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E  284 (566)
T KOG2315|consen  205 GQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE  284 (566)
T ss_pred             cccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence                     0 011223567888887443   333444         488888874444333466899999999999988


Q ss_pred             EEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          292 ILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       292 l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      +++.-+-- ..+.++++.... .       .++       ..++=+.+-|+|.|++|+.+.-|.   .+|.|-|||+.+.
T Consensus       285 F~VvyGfMPAkvtifnlr~~~-v-------~df-------~egpRN~~~fnp~g~ii~lAGFGN---L~G~mEvwDv~n~  346 (566)
T KOG2315|consen  285 FAVVYGFMPAKVTIFNLRGKP-V-------FDF-------PEGPRNTAFFNPHGNIILLAGFGN---LPGDMEVWDVPNR  346 (566)
T ss_pred             EEEEEecccceEEEEcCCCCE-e-------EeC-------CCCCccceEECCCCCEEEEeecCC---CCCceEEEeccch
Confidence            76543221 133333333321 0       011       223558889999999999853333   4488999999987


Q ss_pred             ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc-eeEEEee-----CceEEEEe
Q 014302          371 PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP-LLSVCWS-----SGFCCTYP  418 (427)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~-~l~v~~~-----~g~i~~~~  418 (427)
                      +++..         -......-+.|+|+   |+ +|+..++     |..+.+|.
T Consensus       347 K~i~~---------~~a~~tt~~eW~Pd---Ge~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  347 KLIAK---------FKAANTTVFEWSPD---GEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             hhccc---------cccCCceEEEEcCC---CcEEEEEeccccEEecCCeEEEE
Confidence            76621         12333456789997   54 4555444     45566665

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=2.4e-07  Score=85.78  Aligned_cols=260  Identities=16%  Similarity=0.239  Sum_probs=153.8

Q ss_pred             ceeeeEEcCCCCEEEEEeC-----------CCeEEEEEccCCCCcceeec-cCCcCCeeEEEEccCCCceEEEecCCeEE
Q 014302          101 DLQGVSWHQHKHIVAFISG-----------STQVIVRDYEDSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCKGGIC  168 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~-----------d~~v~vwd~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~la~g~~~~i~  168 (427)
                      .|.-+.|||+.++|+|-+.           ...++|||+.++.....-.. ......-.-..||-|+ +++|.-..++|.
T Consensus       251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~~sis  329 (698)
T KOG2314|consen  251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTGNSIS  329 (698)
T ss_pred             CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-ceeEEeccceEE
Confidence            6888999999999998642           26889999998822111111 1111112346899998 788877778899


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------------cC
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------------LG  229 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------------~~  229 (427)
                      |++..                         ...++. .+.-....|..+.|+|.+.+++                   ++
T Consensus       330 IyEtp-------------------------sf~lld-~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~  383 (698)
T KOG2314|consen  330 IYETP-------------------------SFMLLD-KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK  383 (698)
T ss_pred             EEecC-------------------------ceeeec-ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc
Confidence            99876                         111111 1111245577888998887754                   12


Q ss_pred             ceEEe---ccCCeEEEEEccCCCEEEEEec-------C---CcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEE
Q 014302          230 TPIRR---GFGGLSILKWSPTGDYFFAAKF-------D---GTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       230 ~~~~~---~~~~v~~~~~sp~g~~l~~~~~-------d---g~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~  295 (427)
                      +.++.   +.-.-..+.|..+|.+|+.--.       .   ..+.|+.++.... .........|...+|-|.|..+++-
T Consensus       384 ~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi  463 (698)
T KOG2314|consen  384 REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVI  463 (698)
T ss_pred             ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEE
Confidence            22322   1111223559999999884211       1   1366777766554 2333677889999999999988765


Q ss_pred             EcCC--ceeeeeeeCCC--CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          296 FAGS--LTLGSIHFASK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       296 ~~~~--~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      ..+.  .++..+.+...  ...+   .  ..++       ....+.+.|+|.|++++++...+..   |.+.++|+....
T Consensus       464 ~g~~~k~tvsfY~~e~~~~~~~l---V--k~~d-------k~~~N~vfwsPkG~fvvva~l~s~~---g~l~F~D~~~a~  528 (698)
T KOG2314|consen  464 SGNTVKNTVSFYAVETNIKKPSL---V--KELD-------KKFANTVFWSPKGRFVVVAALVSRR---GDLEFYDTDYAD  528 (698)
T ss_pred             EccccccceeEEEeecCCCchhh---h--hhhc-------ccccceEEEcCCCcEEEEEEecccc---cceEEEecchhh
Confidence            5544  23333333321  1111   0  0111       1256889999999999997666544   679999987422


Q ss_pred             eEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc
Q 014302          372 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g  412 (427)
                      +..      + +.-++..+..+-|.|.   |.-+..+.+.+
T Consensus       529 ~k~------~-~~~eh~~at~veWDPt---GRYvvT~ss~w  559 (698)
T KOG2314|consen  529 LKD------T-ASPEHFAATEVEWDPT---GRYVVTSSSSW  559 (698)
T ss_pred             hhh------c-cCccccccccceECCC---CCEEEEeeehh
Confidence            221      1 1122223446778886   55555555544

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=8.1e-09  Score=91.22  Aligned_cols=172  Identities=12%  Similarity=0.147  Sum_probs=115.6

Q ss_pred             cCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeE
Q 014302          140 SDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (427)
Q Consensus       140 ~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (427)
                      .+|.+.|.++.||.++ ++|++|++ ..+++|.++..     ....              ..+++....           
T Consensus        53 ~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~-----~~~k--------------~~KPI~~~~-----------  101 (609)
T KOG4227|consen   53 REHTGCINALQFSHND-RFLASGGDDMHGRVWNVDEL-----MVRK--------------TPKPIGVME-----------  101 (609)
T ss_pred             hhhccccceeeeccCC-eEEeecCCcceeeeechHHH-----Hhhc--------------CCCCceecc-----------
Confidence            3689999999999997 88888877 77999998700     0000              001111111           


Q ss_pred             eCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccC---CCCeeEEEECCCCCEEEEE
Q 014302          219 WGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSST---SGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       219 ~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~v~~v~~spdg~~l~~~  295 (427)
                                    ..|...|.+++|...+++|++|..+++|.+.|+.+.+..-...|   .+.|..+.-+|-.+.+++.
T Consensus       102 --------------~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~  167 (609)
T KOG4227|consen  102 --------------HPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVV  167 (609)
T ss_pred             --------------CccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEE
Confidence                          12557899999999999999999999999999998887555444   4589999999988888765


Q ss_pred             EcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          296 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       296 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                       .+++.+..|++.+.+..    ..++     .....+.....+-|+|-...|+..  .+..   +-+.|||++...
T Consensus       168 -t~~~~V~~~D~Rd~~~~----~~~~-----~~AN~~~~F~t~~F~P~~P~Li~~--~~~~---~G~~~~D~R~~~  228 (609)
T KOG4227|consen  168 -TRAKLVSFIDNRDRQNP----ISLV-----LPANSGKNFYTAEFHPETPALILV--NSET---GGPNVFDRRMQA  228 (609)
T ss_pred             -ecCceEEEEeccCCCCC----Ccee-----eecCCCccceeeeecCCCceeEEe--cccc---CCCCceeecccc
Confidence             45556777777665311    1111     000112256788899887766554  3333   338899987543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=1.2e-07  Score=87.74  Aligned_cols=271  Identities=15%  Similarity=0.212  Sum_probs=156.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec----------C-CeEEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------K-GGICI  169 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~----------~-~~i~i  169 (427)
                      .=+-+.|||-|.+|++-..-| |.+|-=..   -.......|. .|.-+.|||...+++.-+.          + ..++|
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~---f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGES---FDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCcc---HHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence            457889999999999987655 55884222   1233344565 6899999999954444441          2 56889


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce--EE--------------
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP--IR--------------  233 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--~~--------------  233 (427)
                      ||+.         +|...             .....++.. ...-.-+.||.|+++++....  +.              
T Consensus       287 WDI~---------tG~lk-------------rsF~~~~~~-~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ks  343 (698)
T KOG2314|consen  287 WDIA---------TGLLK-------------RSFPVIKSP-YLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKS  343 (698)
T ss_pred             EEcc---------ccchh-------------cceeccCCC-ccccceEEeccCCceeEEeccceEEEEecCceeeecccc
Confidence            9997         33100             011111111 333446789999988653221  10              


Q ss_pred             eccCCeEEEEEccCCCEEE--EEecC---CcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCc-------
Q 014302          234 RGFGGLSILKWSPTGDYFF--AAKFD---GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSL-------  300 (427)
Q Consensus       234 ~~~~~v~~~~~sp~g~~l~--~~~~d---g~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~-------  300 (427)
                      ..-.+|....|||.+..||  +-..+   ..+.+-.+.+++..... -+.-.-..+-|-.+|.+|++-...-.       
T Consensus       344 lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~  423 (698)
T KOG2314|consen  344 LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQ  423 (698)
T ss_pred             cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccce
Confidence            1235788899999999888  22222   34666666666543322 23333456778899999876432211       


Q ss_pred             --eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeee
Q 014302          301 --TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI  378 (427)
Q Consensus       301 --~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~  378 (427)
                        .+-+.++..+.       .|+     ........|...+|.|.|..+++.+.....   .++.+|.+++.... ..  
T Consensus       424 f~n~eIfrireKd-------Ipv-----e~velke~vi~FaWEP~gdkF~vi~g~~~k---~tvsfY~~e~~~~~-~~--  485 (698)
T KOG2314|consen  424 FSNLEIFRIREKD-------IPV-----EVVELKESVIAFAWEPHGDKFAVISGNTVK---NTVSFYAVETNIKK-PS--  485 (698)
T ss_pred             EeeEEEEEeeccC-------CCc-----eeeecchheeeeeeccCCCeEEEEEccccc---cceeEEEeecCCCc-hh--
Confidence              11222222221       111     112233478999999999999986433332   56999998752210 00  


Q ss_pred             eeeeCCCCCCCceeEEeccCCCCCceeEEE---eeCceEEEEecccc
Q 014302          379 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVC---WSSGFCCTYPLIFR  422 (427)
Q Consensus       379 ~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~---~~~g~i~~~~~~~~  422 (427)
                       .+.- -+......+.|.|.   |..+.++   ...|.+.||+.-|+
T Consensus       486 -lVk~-~dk~~~N~vfwsPk---G~fvvva~l~s~~g~l~F~D~~~a  527 (698)
T KOG2314|consen  486 -LVKE-LDKKFANTVFWSPK---GRFVVVAALVSRRGDLEFYDTDYA  527 (698)
T ss_pred             -hhhh-hcccccceEEEcCC---CcEEEEEEecccccceEEEecchh
Confidence             1111 11123446778886   5544444   34789999998874

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.96  E-value=4.5e-08  Score=96.77  Aligned_cols=191  Identities=18%  Similarity=0.249  Sum_probs=132.5

Q ss_pred             eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCe-----eEEEEccCCCceEEEecC-CeEEEEeccCCC
Q 014302          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDV-----KVLEWRPNGGRSLSVGCK-GGICIWAPSYPG  176 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v-----~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~  176 (427)
                      ....+.-+...++.++.+..+.+||....   .......+...+     .-+-++++. -.+++|.- +.+.+|+.. ..
T Consensus        91 ~g~~l~~e~k~i~l~~~~ns~~i~d~~~~---~~~~~i~~~er~~l~~~~~~g~s~~~-~~i~~gsv~~~iivW~~~-~d  165 (967)
T KOG0974|consen   91 FGAKLFEENKKIALVTSRNSLLIRDSKNS---SVLSKIQSDERCTLYSSLIIGDSAEE-LYIASGSVFGEIIVWKPH-ED  165 (967)
T ss_pred             cccchhhhcceEEEEEcCceEEEEecccC---ceehhcCCCceEEEEeEEEEeccCcE-EEEEeccccccEEEEecc-cc
Confidence            33455566778899999999999998766   222222333222     122334444 56677765 889999875 11


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                      +                                  .+                ..+.+|.+.+..+.|+-||+++++.++
T Consensus       166 n----------------------------------~p----------------~~l~GHeG~iF~i~~s~dg~~i~s~Sd  195 (967)
T KOG0974|consen  166 N----------------------------------KP----------------IRLKGHEGSIFSIVTSLDGRYIASVSD  195 (967)
T ss_pred             C----------------------------------Cc----------------ceecccCCceEEEEEccCCcEEEEEec
Confidence            1                                  00                024568899999999999999999999


Q ss_pred             CCcEEEEEcCCCCccc--cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-CccccccccccccceeeccCC
Q 014302          257 DGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVDLPDIVSLTGSQ  333 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  333 (427)
                      |.++|+|++.+.+...  -.+|...+..++|.|+  .+++++.+. +.+.|....... .++.|..             .
T Consensus       196 DRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedc-tcrvW~~~~~~l~~y~~h~g-------------~  259 (967)
T KOG0974|consen  196 DRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDC-TCRVWGVNGTQLEVYDEHSG-------------K  259 (967)
T ss_pred             CcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccce-EEEEEecccceehhhhhhhh-------------c
Confidence            9999999999988744  3389999999999998  777665444 777774443311 2333322             3


Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      .|+.++.+++...+++   +++|   |.+++|++...
T Consensus       260 ~iw~~~~~~~~~~~vT---~g~D---s~lk~~~l~~r  290 (967)
T KOG0974|consen  260 GIWKIAVPIGVIIKVT---GGND---STLKLWDLNGR  290 (967)
T ss_pred             ceeEEEEcCCceEEEe---eccC---cchhhhhhhcc
Confidence            7899999887777766   7777   77999998653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=9.3e-08  Score=88.55  Aligned_cols=226  Identities=15%  Similarity=0.164  Sum_probs=133.5

Q ss_pred             eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCC-CceEEEe-----cC-CeEEEEeccCC
Q 014302          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNG-GRSLSVG-----CK-GGICIWAPSYP  175 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~-~~~la~g-----~~-~~i~iw~~~~~  175 (427)
                      .+.+|+.|..+.|-- ..+.+++|+....   ......-|...|+.+++||.+ ...+|+=     +. ..++||.....
T Consensus       129 W~~qfs~dEsl~arl-v~nev~f~~~~~f---~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~  204 (566)
T KOG2315|consen  129 WVPQFSIDESLAARL-VSNEVQFYDLGSF---KTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE  204 (566)
T ss_pred             cccccccchhhhhhh-hcceEEEEecCCc---cceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence            477899988755543 3567899887764   222222356789999999984 3345441     22 66889987622


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC------------------------cccC--
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF------------------------PGLG--  229 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~------------------------l~~~--  229 (427)
                      +....+...                       .-....-..+.|++-|.-                        ++..  
T Consensus       205 ~~~~~~a~k-----------------------sFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~  261 (566)
T KOG2315|consen  205 GQHQPVANK-----------------------SFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE  261 (566)
T ss_pred             cccchhhhc-----------------------cccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence            210000000                       000111123344433322                        0100  


Q ss_pred             -ceEEe-ccCCeEEEEEccCCCEEE--EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC--ceee
Q 014302          230 -TPIRR-GFGGLSILKWSPTGDYFF--AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--LTLG  303 (427)
Q Consensus       230 -~~~~~-~~~~v~~~~~sp~g~~l~--~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~--~~i~  303 (427)
                       ..+.. ..++|+++.|+|+|+.++  .|-+-.++.|||++..-.  +.-..++-.++-|+|.|++|+.++-+.  |.+-
T Consensus       262 s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v--~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mE  339 (566)
T KOG2315|consen  262 SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV--FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDME  339 (566)
T ss_pred             eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEe--EeCCCCCccceEECCCCCEEEEeecCCCCCceE
Confidence             11222 368999999999998777  566788999999874332  223566778899999999999887665  4555


Q ss_pred             eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      +|++.+.+....-.              -..-+-+.|+|||++++++..+-.-+-+..++||+.....
T Consensus       340 vwDv~n~K~i~~~~--------------a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  340 VWDVPNRKLIAKFK--------------AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             EEeccchhhccccc--------------cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence            55555532110000              0134678999999999997554221112349999986543

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=98.95  E-value=1.8e-07  Score=77.92  Aligned_cols=159  Identities=14%  Similarity=0.183  Sum_probs=111.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      +|++|...|..+-|++++.|+.+.-||++++  .....+.+|.+.|.++.-.....++|..+.||++++||..       
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G--~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~k-------  186 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDG--RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTK-------  186 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCC--EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEecc-------
Confidence            7999999999888888889999999999998  6777888999999999984444488888888999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEecc-CCeEEEEEccCCCEEEEEecCCc
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGF-GGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~-~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                        ++                ++++++....+.                 ..++.|. ..|-+++  -+..+|++|+ ...
T Consensus       187 --t~----------------k~v~~ie~yk~~-----------------~~lRp~~g~wigala--~~edWlvCGg-Gp~  228 (325)
T KOG0649|consen  187 --TQ----------------KHVSMIEPYKNP-----------------NLLRPDWGKWIGALA--VNEDWLVCGG-GPK  228 (325)
T ss_pred             --cc----------------ceeEEeccccCh-----------------hhcCcccCceeEEEe--ccCceEEecC-CCc
Confidence              21                333333221000                 0122222 2233444  4566888775 678


Q ss_pred             EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      +.+|++++.++.........+..+.|-.|  .++.++ ++..+..|.+..
T Consensus       229 lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G-~g~~v~~~~l~G  275 (325)
T KOG0649|consen  229 LSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGG-EGNHVQSYTLNG  275 (325)
T ss_pred             eeEEeccCCCceEEEecccceeEeeeecc--eEEEec-cccceeeeeecc
Confidence            99999999999877777888888888643  344443 333555555544

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.95  E-value=4.1e-07  Score=91.68  Aligned_cols=279  Identities=13%  Similarity=0.271  Sum_probs=155.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.++.|.-++.-|+.+...|.|.+-|.++.   .......-..+|.+++||||++.+..+.++.++.+-+-++.  +..
T Consensus        70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~---~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~--~i~  144 (1265)
T KOG1920|consen   70 EIVSVQFLADTNSICVITALGDIILVDPETL---ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFE--PIA  144 (1265)
T ss_pred             ceEEEEEecccceEEEEecCCcEEEEccccc---ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecccc--chh
Confidence            7899999999999999999999998766655   33333445678999999999944433444466554332200  000


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC--------CCCcc-----cCceEE--eccCCeEEEEEc
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD--------GRFPG-----LGTPIR--RGFGGLSILKWS  245 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--------g~~l~-----~~~~~~--~~~~~v~~~~~s  245 (427)
                      -                   +... .+....+....+-|-..        |+..+     ..+.+.  .....-..++|-
T Consensus       145 E-------------------~~L~-~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR  204 (1265)
T KOG1920|consen  145 E-------------------KPLD-ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR  204 (1265)
T ss_pred             c-------------------cccc-cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc
Confidence            0                   0000 00000111112222211        11100     000000  011234568999


Q ss_pred             cCCCEEEEEe----cC-CcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302          246 PTGDYFFAAK----FD-GTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       246 p~g~~l~~~~----~d-g~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      -||+++|+..    .+ +.|++||.. +..... ....+--.+++|-|.|..+++..... ....+.+..+.+...++..
T Consensus       205 gDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~-sd~~IvffErNGL~hg~f~  282 (1265)
T KOG1920|consen  205 GDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKT-SDSDIVFFERNGLRHGEFV  282 (1265)
T ss_pred             cCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecC-CCCcEEEEecCCccccccc
Confidence            9999999632    23 789999977 333222 23344456899999999988654333 3334555554443333332


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  399 (427)
                       +..+.     ....+..++|+.++..||+-......   ..|++|-+.+...+......+   +...    -+.|+|.-
T Consensus       283 -l~~p~-----de~~ve~L~Wns~sdiLAv~~~~~e~---~~v~lwt~~NyhWYLKq~l~~---~~~~----~~~W~p~~  346 (1265)
T KOG1920|consen  283 -LPFPL-----DEKEVEELAWNSNSDILAVVTSNLEN---SLVQLWTTGNYHWYLKQELQF---SQKA----LLMWDPVT  346 (1265)
T ss_pred             -cCCcc-----cccchheeeecCCCCceeeeeccccc---ceEEEEEecCeEEEEEEEEec---cccc----cccccCCC
Confidence             11111     11148999999999999984333332   459999998877654432222   2222    15677742


Q ss_pred             CCCceeEEEeeCceEEEEeccccCC
Q 014302          400 KQGPLLSVCWSSGFCCTYPLIFRSH  424 (427)
Q Consensus       400 ~~g~~l~v~~~~g~i~~~~~~~~~~  424 (427)
                        ...|-+-..+|.+.+|+|.|..+
T Consensus       347 --~~~L~v~~~sG~~~v~~~~~~t~  369 (1265)
T KOG1920|consen  347 --EKTLHVLRESGQRLVRDFAWTTD  369 (1265)
T ss_pred             --ceeEEEEecCCcEEEEEEEEeee
Confidence              22344433788888888877543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.94  E-value=1.6e-07  Score=94.51  Aligned_cols=218  Identities=15%  Similarity=0.153  Sum_probs=126.4

Q ss_pred             ceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCc
Q 014302          135 ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ  213 (427)
Q Consensus       135 ~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (427)
                      .....+.|...|..++.++....++++|++ |+|++|+...                               +.++....
T Consensus      1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k-------------------------------~~~~~~s~ 1088 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK-------------------------------LEGEGGSA 1088 (1431)
T ss_pred             EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehh-------------------------------hhcCccee
Confidence            444456788888899988776567777765 9999999871                               11111111


Q ss_pred             eeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---------cCCC-CeeEE
Q 014302          214 ITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---------STSG-FVTGA  283 (427)
Q Consensus       214 v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~-~v~~v  283 (427)
                      -..+.|++.             ...+..+...+.+..+|.++.||.|++.++.........         ...+ .+..-
T Consensus      1089 rS~ltys~~-------------~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~ 1155 (1431)
T KOG1240|consen 1089 RSELTYSPE-------------GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMH 1155 (1431)
T ss_pred             eeeEEEecc-------------CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEee
Confidence            123444442             346777888889999999999999999998763221111         1122 22333


Q ss_pred             EECC-CCC-EEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeE
Q 014302          284 TWDP-EGR-MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGL  361 (427)
Q Consensus       284 ~~sp-dg~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~  361 (427)
                      +|.. .++ .|++++... .+..|+.....          +.-..+.-..+|.|++++.+|.+.|++.   |+..   |.
T Consensus      1156 a~~~~~~S~~lvy~T~~~-~iv~~D~r~~~----------~~w~lk~~~~hG~vTSi~idp~~~Wlvi---Gts~---G~ 1218 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLS-RIVSWDTRMRH----------DAWRLKNQLRHGLVTSIVIDPWCNWLVI---GTSR---GQ 1218 (1431)
T ss_pred             cccccccceeEEEEEecc-ceEEecchhhh----------hHHhhhcCccccceeEEEecCCceEEEE---ecCC---ce
Confidence            3332 233 455554333 33344433321          0001111224568999999999999999   6665   78


Q ss_pred             EEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc-eeEEEe-eCceEEEEec
Q 014302          362 IAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP-LLSVCW-SSGFCCTYPL  419 (427)
Q Consensus       362 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~-~l~v~~-~~g~i~~~~~  419 (427)
                      +.+||++-+..+.....+    ....  ...+..+|.+.+.. .+.++. +.+.+.+|.+
T Consensus      1219 l~lWDLRF~~~i~sw~~P----~~~~--i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1219 LVLWDLRFRVPILSWEHP----ARAP--IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             EEEEEeecCceeecccCc----ccCC--cceEEeeccCCCCceEEEecccCCCceeeeec
Confidence            999999877665332111    1122  22444455443333 344444 5667777764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.92  E-value=2.4e-07  Score=95.99  Aligned_cols=252  Identities=17%  Similarity=0.272  Sum_probs=143.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccC-------------C---------CCcceee--------------------
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED-------------S---------GKDACIL--------------------  138 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~-------------~---------~~~~~~~--------------------  138 (427)
                      .|.+++||||+..||..+.++++.+.+-+-             +         +++..+.                    
T Consensus       122 GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~  201 (928)
T PF04762_consen  122 GILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV  201 (928)
T ss_pred             cEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence            899999999999999999898887643211             0         0000000                    


Q ss_pred             ----ccCCcCCeeEEEEccCCCceEEEec-------CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhc
Q 014302          139 ----TSDSQRDVKVLEWRPNGGRSLSVGC-------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR  207 (427)
Q Consensus       139 ----~~~~~~~v~~l~~sp~~~~~la~g~-------~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (427)
                          .. +...-..++|..|| .++|++.       ...++||+-+  |.                         ++...
T Consensus       202 d~~~~s-~dd~~~~ISWRGDG-~yFAVss~~~~~~~~R~iRVy~Re--G~-------------------------L~stS  252 (928)
T PF04762_consen  202 DEGKLS-WDDGRVRISWRGDG-EYFAVSSVEPETGSRRVIRVYSRE--GE-------------------------LQSTS  252 (928)
T ss_pred             ccCccc-cCCCceEEEECCCC-cEEEEEEEEcCCCceeEEEEECCC--ce-------------------------EEecc
Confidence                00 23345678999999 6666552       2457899865  11                         11111


Q ss_pred             ccCCCceeeeEeCCCCCCcccCce---------------------EE--eccCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 014302          208 SQNGEQITALSWGPDGRFPGLGTP---------------------IR--RGFGGLSILKWSPTGDYFFAAKFDGTFYLWE  264 (427)
Q Consensus       208 ~~~~~~v~~~~~spdg~~l~~~~~---------------------~~--~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd  264 (427)
                      ....+--.+++|.|.|++++..+.                     ++  .....|..++|++|+..||....|. |.+|-
T Consensus       253 E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt  331 (928)
T PF04762_consen  253 EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWT  331 (928)
T ss_pred             ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEE
Confidence            111222347899999998764432                     11  1235688999999999999766555 99998


Q ss_pred             cCCCCc---ccc-ccCCCCeeEEEECCCCC-EEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEE
Q 014302          265 TNTWTS---EPW-SSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA  339 (427)
Q Consensus       265 ~~~~~~---~~~-~~~~~~v~~v~~spdg~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  339 (427)
                      +.+..=   ..+ ......+..+.|+|... .|.+.+.++ .+..+++.                           +.++
T Consensus       332 ~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g-~~~~~~~~---------------------------~~v~  383 (928)
T PF04762_consen  332 RSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNG-QYEIYDFA---------------------------WDVS  383 (928)
T ss_pred             eeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCC-cEEEEEEE---------------------------EEEE
Confidence            766441   111 13334455699999654 344444423 22222221                           1111


Q ss_pred             EC----C-CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302          340 WD----A-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC  414 (427)
Q Consensus       340 ~s----p-~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i  414 (427)
                      .+    | |...+|+.  ++.     ++.+-.++...+  -.|.+...-. -...+.+++|.+.   +..+++-.++|.|
T Consensus       384 ~s~~~~~~D~g~vaVI--DG~-----~lllTpf~~a~V--PPPMs~~~l~-~~~~v~~vaf~~~---~~~~avl~~d~~l  450 (928)
T PF04762_consen  384 RSPGSSPNDNGTVAVI--DGN-----KLLLTPFRRAVV--PPPMSSYELE-LPSPVNDVAFSPS---NSRFAVLTSDGSL  450 (928)
T ss_pred             ecCCCCccCceEEEEE--eCC-----eEEEecccccCC--CchHhceEEc-CCCCcEEEEEeCC---CCeEEEEECCCCE
Confidence            22    2 22234442  432     377766654321  1222222222 1234778999886   3449999999999


Q ss_pred             EEEeccccC
Q 014302          415 CTYPLIFRS  423 (427)
Q Consensus       415 ~~~~~~~~~  423 (427)
                      .+|.+.+..
T Consensus       451 ~~~~~~~~~  459 (928)
T PF04762_consen  451 SIYEWDLKN  459 (928)
T ss_pred             EEEEecCCC
Confidence            999966543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.90  E-value=2.3e-07  Score=86.57  Aligned_cols=113  Identities=12%  Similarity=0.225  Sum_probs=86.9

Q ss_pred             ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-
Q 014302          235 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-  312 (427)
Q Consensus       235 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-  312 (427)
                      |.++|.++.++.+-..|.+++.|+.+..|+...... ..+......+.+++.+|||..|++++.   .|..|++.++.. 
T Consensus       101 h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~---~ik~~~~~~kevv  177 (541)
T KOG4547|consen  101 HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASR---QIKVLDIETKEVV  177 (541)
T ss_pred             CCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccc---eEEEEEccCceEE
Confidence            678899999999989999999999999999988776 445577788999999999999987653   677888877632 


Q ss_pred             -CccccccccccccceeeccCCceeEEEECCC-----CCEEEEEEecCCCcceeEEEEEEecc
Q 014302          313 -SLDAHLLPVDLPDIVSLTGSQGIEKIAWDAS-----GERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       313 -~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~-----g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                       .+.||.              ++|+.++|-.+     |.++.++......     +.+|-+..
T Consensus       178 ~~ftgh~--------------s~v~t~~f~~~~~g~~G~~vLssa~~~r~-----i~~w~v~~  221 (541)
T KOG4547|consen  178 ITFTGHG--------------SPVRTLSFTTLIDGIIGKYVLSSAAAERG-----ITVWVVEK  221 (541)
T ss_pred             EEecCCC--------------cceEEEEEEEeccccccceeeeccccccc-----eeEEEEEc
Confidence             344444              47788888766     8888775434333     88887754

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.89  E-value=7.2e-09  Score=93.52  Aligned_cols=189  Identities=13%  Similarity=0.186  Sum_probs=126.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      .|..+.|-|..-+|++++..|.++--|+..+  +.+.....-.+.+..++-+|-. .++-.|. .|+|.+|.-.      
T Consensus       211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G--klVa~~~t~~G~~~vm~qNP~N-aVih~GhsnGtVSlWSP~------  281 (545)
T KOG1272|consen  211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTG--KLVASIRTGAGRTDVMKQNPYN-AVIHLGHSNGTVSLWSPN------  281 (545)
T ss_pred             chhhhcccchhheeeecccCCceEEEeechh--hhhHHHHccCCccchhhcCCcc-ceEEEcCCCceEEecCCC------
Confidence            8999999999999999999999999999888  4444444455678888899987 6777775 4999999875      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                         ..                .++.                          .+-.|.++|.++++.++|+|+++.+.|..
T Consensus       282 ---sk----------------ePLv--------------------------KiLcH~g~V~siAv~~~G~YMaTtG~Dr~  316 (545)
T KOG1272|consen  282 ---SK----------------EPLV--------------------------KILCHRGPVSSIAVDRGGRYMATTGLDRK  316 (545)
T ss_pred             ---Cc----------------chHH--------------------------HHHhcCCCcceEEECCCCcEEeecccccc
Confidence               00                0011                          12237789999999999999999999999


Q ss_pred             EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEE
Q 014302          260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA  339 (427)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  339 (427)
                      ++|||++................+++|.-|- || .+.++    .+.+|.......++..   .+-.... -.+.|..+.
T Consensus       317 ~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA-~~~G~----~v~iw~d~~~~s~~~~---~pYm~H~-~~~~V~~l~  386 (545)
T KOG1272|consen  317 VKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LA-LSYGD----HVQIWKDALKGSGHGE---TPYMNHR-CGGPVEDLR  386 (545)
T ss_pred             eeEeeeccccccceeecCCCccccccccccc-ee-eecCC----eeeeehhhhcCCCCCC---cchhhhc-cCcccccce
Confidence            9999999877532222245667788886553 33 33444    3444443111111110   0001111 123889999


Q ss_pred             ECCCCCEEEEEEec
Q 014302          340 WDASGERLAVSYKG  353 (427)
Q Consensus       340 ~sp~g~~La~~~~~  353 (427)
                      |+|-...|-+...+
T Consensus       387 FcP~EDvLGIGH~~  400 (545)
T KOG1272|consen  387 FCPYEDVLGIGHAG  400 (545)
T ss_pred             eccHHHeeeccccC
Confidence            99988888774333

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.87  E-value=1.8e-06  Score=79.05  Aligned_cols=226  Identities=12%  Similarity=0.035  Sum_probs=121.7

Q ss_pred             EcCCCCEEEEEeC----------CCeEEEEEccCCCCccee-eccC------CcCCeeEEEEccCCCceEEEe-c-CCeE
Q 014302          107 WHQHKHIVAFISG----------STQVIVRDYEDSGKDACI-LTSD------SQRDVKVLEWRPNGGRSLSVG-C-KGGI  167 (427)
Q Consensus       107 ~sp~g~~lat~~~----------d~~v~vwd~~~~~~~~~~-~~~~------~~~~v~~l~~sp~~~~~la~g-~-~~~i  167 (427)
                      +||||+.|.++..          +..|.|||..+.  +... +..+      ....-..++++|||+.+++.- . +..+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V  130 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV  130 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence            8999998777654          789999999887  2221 1111      112234789999995444444 3 4889


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-----cCceEEeccCCe---
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-----LGTPIRRGFGGL---  239 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-----~~~~~~~~~~~v---  239 (427)
                      .+.|+....-...+...           .....+.        ...-..+....||+++.     .+... .....+   
T Consensus       131 ~VvD~~~~kvv~ei~vp-----------~~~~vy~--------t~e~~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~  190 (352)
T TIGR02658       131 GVVDLEGKAFVRMMDVP-----------DCYHIFP--------TANDTFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHP  190 (352)
T ss_pred             EEEECCCCcEEEEEeCC-----------CCcEEEE--------ecCCccEEEeecCceEEEEecCCCceE-EeeeeeecC
Confidence            99998721110001111           0000000        00001122233443322     01100 000000   


Q ss_pred             ------EEEEEcc-CCCEEEEEecCCcEEEEEcCCCCcc---ccc----c------CCCCeeEEEECCCCCEEEEEEcCC
Q 014302          240 ------SILKWSP-TGDYFFAAKFDGTFYLWETNTWTSE---PWS----S------TSGFVTGATWDPEGRMILLAFAGS  299 (427)
Q Consensus       240 ------~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~---~~~----~------~~~~v~~v~~spdg~~l~~~~~~~  299 (427)
                            ..-.|++ +|+++++... |.|.+.|+......   .+.    .      ..+...-++++|+|+++++.....
T Consensus       191 ~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~  269 (352)
T TIGR02658       191 EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR  269 (352)
T ss_pred             CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence                  0003455 8888887776 99999996543321   111    0      122334489999999888743221


Q ss_pred             ---------ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEecc
Q 014302          300 ---------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       300 ---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                               +.+.+++....+             ....+..+..+..++++|||+ +|.++...+     +.|.++|+.+
T Consensus       270 ~~~thk~~~~~V~ViD~~t~k-------------vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-----~~VsViD~~t  331 (352)
T TIGR02658       270 AKWTHKTASRFLFVVDAKTGK-------------RLRKIELGHEIDSINVSQDAKPLLYALSTGD-----KTLYIFDAET  331 (352)
T ss_pred             ccccccCCCCEEEEEECCCCe-------------EEEEEeCCCceeeEEECCCCCeEEEEeCCCC-----CcEEEEECcC
Confidence                     255555544431             122233455889999999999 777653333     4599999999


Q ss_pred             CceE
Q 014302          370 TPLI  373 (427)
Q Consensus       370 ~~~~  373 (427)
                      ++.+
T Consensus       332 ~k~i  335 (352)
T TIGR02658       332 GKEL  335 (352)
T ss_pred             CeEE
Confidence            8776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.86  E-value=3e-06  Score=89.63  Aligned_cols=271  Identities=12%  Similarity=0.105  Sum_probs=148.6

Q ss_pred             eeeEEcCC-CCEEEEEeCCCeEEEEEccCCCCcceeecc-C------------CcCCeeEEEEccCCCceEEEec-CCeE
Q 014302          103 QGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKDACILTS-D------------SQRDVKVLEWRPNGGRSLSVGC-KGGI  167 (427)
Q Consensus       103 ~~l~~sp~-g~~lat~~~d~~v~vwd~~~~~~~~~~~~~-~------------~~~~v~~l~~sp~~~~~la~g~-~~~i  167 (427)
                      ..++++++ +.++++-+.++.|++||.+..  ....... +            .-..-..+++.+++..++++-. .+.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~--~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN--FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC--EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            46788875 556666677889999987643  1111111 1            1123578899988744444333 3667


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT  247 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~  247 (427)
                      ++++..         ++              .   +..+.+...   ....+  +|.......    ....-+.++++|+
T Consensus       649 r~id~~---------~~--------------~---V~tlag~G~---~g~~~--~gg~~~~~~----~ln~P~gVa~dp~  693 (1057)
T PLN02919        649 REIDFV---------NE--------------T---VRTLAGNGT---KGSDY--QGGKKGTSQ----VLNSPWDVCFEPV  693 (1057)
T ss_pred             EEEecC---------CC--------------E---EEEEeccCc---ccCCC--CCChhhhHh----hcCCCeEEEEecC
Confidence            788765         11              0   111110000   00000  000000000    0123357899995


Q ss_pred             CCEE-EEEecCCcEEEEEcCCCCccccc---------------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302          248 GDYF-FAAKFDGTFYLWETNTWTSEPWS---------------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  311 (427)
Q Consensus       248 g~~l-~~~~~dg~v~iwd~~~~~~~~~~---------------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~  311 (427)
                      +..+ ++.+.++.|++||..++....+.               ..-.....++|+|+|+.|+++...++.|+.|++....
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~  773 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG  773 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence            5444 46677889999998765432211               0112456799999999888887777788888876532


Q ss_pred             CCccccccc---c---ccccce---eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee---
Q 014302          312 PSLDAHLLP---V---DLPDIV---SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG---  379 (427)
Q Consensus       312 ~~~~~~~~~---~---~~~~~~---~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~---  379 (427)
                      ..+-....+   .   .+....   ....-.....++++++|..+++   +..+   ++|++||..++.+..+...|   
T Consensus       774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA---Ds~N---~rIrviD~~tg~v~tiaG~G~~G  847 (1057)
T PLN02919        774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA---DSYN---HKIKKLDPATKRVTTLAGTGKAG  847 (1057)
T ss_pred             EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE---ECCC---CEEEEEECCCCeEEEEeccCCcC
Confidence            111000000   0   000000   0000114568999999986655   4444   66999999887766443222   


Q ss_pred             eeeC---CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          380 FIRG---PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       380 ~~~~---~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      +..+   ...-..|..+++.++   |.++.+...+++|.+|++
T Consensus       848 ~~dG~~~~a~l~~P~GIavd~d---G~lyVaDt~Nn~Irvid~  887 (1057)
T PLN02919        848 FKDGKALKAQLSEPAGLALGEN---GRLFVADTNNSLIRYLDL  887 (1057)
T ss_pred             CCCCcccccccCCceEEEEeCC---CCEEEEECCCCEEEEEEC
Confidence            1111   111224677888775   778888888999999986

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.83  E-value=8.3e-07  Score=80.82  Aligned_cols=127  Identities=14%  Similarity=0.225  Sum_probs=99.3

Q ss_pred             ccCCeEEEEEccCCCEEEEEecCC-cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302          235 GFGGLSILKWSPTGDYFFAAKFDG-TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  313 (427)
Q Consensus       235 ~~~~v~~~~~sp~g~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~  313 (427)
                      +.++|.-..+.-+++-++.|..|| .+-|||.++++.......-+.|.++..++||++++.+ ++...++++++.+....
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva-Ndr~el~vididngnv~  436 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA-NDRFELWVIDIDNGNVR  436 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE-cCceEEEEEEecCCCee
Confidence            345677777888888899999999 8999999999888888888999999999999998865 66668999999886432


Q ss_pred             ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                      +-..            ..-+-|+.++|+|+++++|-++..+--  ...|+++|+..++.+.++
T Consensus       437 ~idk------------S~~~lItdf~~~~nsr~iAYafP~gy~--tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         437 LIDK------------SEYGLITDFDWHPNSRWIAYAFPEGYY--TQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             Eecc------------cccceeEEEEEcCCceeEEEecCccee--eeeEEEEecCCCeEEEec
Confidence            2111            112368999999999999987764421  256999999998887554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.80  E-value=8.9e-07  Score=81.30  Aligned_cols=222  Identities=15%  Similarity=0.194  Sum_probs=133.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC----------------
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----------------  164 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~----------------  164 (427)
                      .+..++|||.|.+|++.... .|.+|.-....   ......|. .|..+.|||.+ .+|.+=.+                
T Consensus        34 p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~---~l~~~~~~-~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          34 PVAYVSESPLGTYLFSEHAA-GVECWGGPSKA---KLVRFRHP-DVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             chhheeecCcchheehhhcc-ceEEccccchh---heeeeecC-CceecccCccc-ceeeeeccCCccChhhccCCcccc
Confidence            68889999999999987544 57788766552   33333444 69999999999 67766433                


Q ss_pred             CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCC--ceeeeEeCCCCCCcc--cCce---------
Q 014302          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGE--QITALSWGPDGRFPG--LGTP---------  231 (427)
Q Consensus       165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~l~--~~~~---------  231 (427)
                      +.+.+||+.         ++                ..+..+......  .-.-+.|+-+.++.+  .+..         
T Consensus       108 n~~~vwd~~---------sg----------------~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n  162 (561)
T COG5354         108 NNVFVWDIA---------SG----------------MIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDN  162 (561)
T ss_pred             CceeEEecc---------Cc----------------eeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCc
Confidence            236788876         21                112212221111  112455665555422  1111         


Q ss_pred             -----EEe-ccCCeEEEEEccCCC--EEE-----EEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEc
Q 014302          232 -----IRR-GFGGLSILKWSPTGD--YFF-----AAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFA  297 (427)
Q Consensus       232 -----~~~-~~~~v~~~~~sp~g~--~l~-----~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~  297 (427)
                           +.. ...++...+|+|.++  .|+     ....++.+++|.+......... -....-..+.|.+.|.+|++-..
T Consensus       163 ~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~  242 (561)
T COG5354         163 IEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVM  242 (561)
T ss_pred             cccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEE
Confidence                 111 125788899999743  344     3566888999999855543222 22334457889999999876432


Q ss_pred             CC----------ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          298 GS----------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       298 ~~----------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      ..          ..++++.+....       .+++      ....++|.+++|.|+++.+++++. -.+   .++.++|+
T Consensus       243 t~~ksnKsyfgesnLyl~~~~e~~-------i~V~------~~~~~pVhdf~W~p~S~~F~vi~g-~~p---a~~s~~~l  305 (561)
T COG5354         243 THTKSNKSYFGESNLYLLRITERS-------IPVE------KDLKDPVHDFTWEPLSSRFAVISG-YMP---ASVSVFDL  305 (561)
T ss_pred             EeeecccceeccceEEEEeecccc-------ccee------ccccccceeeeecccCCceeEEec-ccc---cceeeccc
Confidence            21          133343333221       1111      122458999999999999999653 333   56889999


Q ss_pred             ccC
Q 014302          368 RRT  370 (427)
Q Consensus       368 ~~~  370 (427)
                      +.+
T Consensus       306 r~N  308 (561)
T COG5354         306 RGN  308 (561)
T ss_pred             ccc
Confidence            876

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.80  E-value=4.7e-06  Score=76.72  Aligned_cols=265  Identities=14%  Similarity=0.145  Sum_probs=148.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCC---------------CeEEEEEccCCCCcceeeccCCcCC--ee-EEEEccCCCceEEEe
Q 014302          101 DLQGVSWHQHKHIVAFISGS---------------TQVIVRDYEDSGKDACILTSDSQRD--VK-VLEWRPNGGRSLSVG  162 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d---------------~~v~vwd~~~~~~~~~~~~~~~~~~--v~-~l~~sp~~~~~la~g  162 (427)
                      .|.-+.|||.+++|.+-+..               ..+.|||...+  ...........+  .+ -+.|+-+. .++|--
T Consensus        73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg--~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv  149 (561)
T COG5354          73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASG--MIVFSFNGISQPYLGWPVLKFSIDD-KYVARV  149 (561)
T ss_pred             CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCc--eeEeeccccCCcccccceeeeeecc-hhhhhh
Confidence            78999999999999987433               34889998877  232222222222  33 57888877 555544


Q ss_pred             cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-----------------
Q 014302          163 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-----------------  225 (427)
Q Consensus       163 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-----------------  225 (427)
                      ....+.|+++. + +..                    ......++   ...+..++|+|.|+.                 
T Consensus       150 v~~sl~i~e~t-~-n~~--------------------~~p~~~lr---~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~  204 (561)
T COG5354         150 VGSSLYIHEIT-D-NIE--------------------EHPFKNLR---PVGILDFSISPEGNHDELAYWTPEKLNKPAMV  204 (561)
T ss_pred             ccCeEEEEecC-C-ccc--------------------cCchhhcc---ccceeeEEecCCCCCceEEEEccccCCCCcEE
Confidence            55678888863 1 100                    00111111   334556666665432                 


Q ss_pred             ----cccCceEEec---cCCeEEEEEccCCCEEEEE----e-------cCCcEEEEEcCCCCccccccCCCCeeEEEECC
Q 014302          226 ----PGLGTPIRRG---FGGLSILKWSPTGDYFFAA----K-------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDP  287 (427)
Q Consensus       226 ----l~~~~~~~~~---~~~v~~~~~sp~g~~l~~~----~-------~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~sp  287 (427)
                          +..++++..+   ...-..+.|++.|++|+.-    .       ....++|++++...+.......++|..++|.|
T Consensus       205 ~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p  284 (561)
T COG5354         205 RILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP  284 (561)
T ss_pred             EEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecc
Confidence                1111222221   1223357799999987621    1       11357888887554433336689999999999


Q ss_pred             CCCEEEEEEc-CCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          288 EGRMILLAFA-GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       288 dg~~l~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                      .++.+++..+ ....+...++...   +            ....-.+.=+.+.|||.++++++   ++-+...|.|-+||
T Consensus       285 ~S~~F~vi~g~~pa~~s~~~lr~N---l------------~~~~Pe~~rNT~~fsp~~r~il~---agF~nl~gni~i~~  346 (561)
T COG5354         285 LSSRFAVISGYMPASVSVFDLRGN---L------------RFYFPEQKRNTIFFSPHERYILF---AGFDNLQGNIEIFD  346 (561)
T ss_pred             cCCceeEEecccccceeecccccc---e------------EEecCCcccccccccCcccEEEE---ecCCccccceEEec
Confidence            9988876542 2222333222221   0            00001113366789999999988   44444457799999


Q ss_pred             eccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee------CceEEEEecccc
Q 014302          367 ARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS------SGFCCTYPLIFR  422 (427)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~------~g~i~~~~~~~~  422 (427)
                      ....-...    |-+.++.    ..-+.|.|+   ++.+.+.+.      |-.|.+|+++=+
T Consensus       347 ~~~rf~~~----~~~~~~n----~s~~~wspd---~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         347 PAGRFKVA----GAFNGLN----TSYCDWSPD---GQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cCCceEEE----EEeecCC----ceEeeccCC---ceEEEecCCCcccccCcceEEEEecCc
Confidence            87765442    1222222    224456665   444444433      456777776644

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.79  E-value=5.9e-08  Score=83.49  Aligned_cols=248  Identities=13%  Similarity=0.094  Sum_probs=135.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC-C--cceeeccCC------------cCCeeEEEEccCCC--ceEEEec
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-K--DACILTSDS------------QRDVKVLEWRPNGG--RSLSVGC  163 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~-~--~~~~~~~~~------------~~~v~~l~~sp~~~--~~la~g~  163 (427)
                      .|+++.|...|.+||+|...|.|.++.-+... .  +......+|            ...|..+.|..++.  .+|.++.
T Consensus        28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstN  107 (460)
T COG5170          28 KITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTN  107 (460)
T ss_pred             eeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecC
Confidence            68999999999999999888999998765441 1  111112222            23578899986653  3788899


Q ss_pred             CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc--CceE-EeccCCeE
Q 014302          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL--GTPI-RRGFGGLS  240 (427)
Q Consensus       164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~~~~-~~~~~~v~  240 (427)
                      +.+|++|.+- ..+...+.....+.....+..+  .....+.+..        ...+....+++.  .... ..|.-.+.
T Consensus       108 dktiKlWKiy-eknlk~va~nnls~~~~~~~~g--~~~s~~~l~l--------prls~hd~iiaa~p~rvyaNaH~yhiN  176 (460)
T COG5170         108 DKTIKLWKIY-EKNLKVVAENNLSDSFHSPMGG--PLTSTKELLL--------PRLSEHDEIIAAKPCRVYANAHPYHIN  176 (460)
T ss_pred             Cceeeeeeee-cccchhhhccccccccccccCC--CcCCHHHhhc--------ccccccceEEEeccceeccccceeEee
Confidence            9999999985 2221111111000000000000  0000000000        000000011110  0111 23666788


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCc-c--------ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTS-E--------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  311 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~--------~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~  311 (427)
                      ++++..|...++++. |=.|.+|++.-... -        .......-|++..|+|....++.-++..|.|.+.++....
T Consensus       177 SiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a  255 (460)
T COG5170         177 SISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA  255 (460)
T ss_pred             eeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence            999999988887664 78899998764332 1        1112334678889999755444334445577777766421


Q ss_pred             C------CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          312 P------SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       312 ~------~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      .      .++-...+++..-.  ...-..|..+.|+++|+|+++-   .-    -+|+|||++.
T Consensus       256 lcdn~~klfe~~~D~v~~~ff--~eivsSISD~kFs~ngryIlsR---dy----ltvkiwDvnm  310 (460)
T COG5170         256 LCDNSKKLFELTIDGVDVDFF--EEIVSSISDFKFSDNGRYILSR---DY----LTVKIWDVNM  310 (460)
T ss_pred             hccCchhhhhhccCcccchhH--HHHhhhhcceEEcCCCcEEEEe---cc----ceEEEEeccc
Confidence            1      11111111111000  0112378999999999999883   22    4699999865

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.76  E-value=1.6e-06  Score=75.93  Aligned_cols=201  Identities=13%  Similarity=0.145  Sum_probs=133.6

Q ss_pred             CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC
Q 014302           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (427)
Q Consensus        98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~  175 (427)
                      ....+++++++++-..|.+|-.+|++.-+.+...  ..........|...|..+-|+-....++.+|.|.+ ..|.....
T Consensus        67 mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~-~~~hc~e~  145 (404)
T KOG1409|consen   67 MPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ-FAWHCTES  145 (404)
T ss_pred             CCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccc-eEEEeecc
Confidence            3448999999999999999999999988776554  22344555679999999999977656666666654 45665433


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK  255 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  255 (427)
                      ++....-       .-.......+....-.+.+.+..+|+.+.+-+.+--  .-..+..|.+.+++++|.|..+.|++|.
T Consensus       146 ~~~lg~Y-------~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~--~i~~~~~h~~~~~~l~Wd~~~~~LfSg~  216 (404)
T KOG1409|consen  146 GNRLGGY-------NFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQ--LITTFNGHTGEVTCLKWDPGQRLLFSGA  216 (404)
T ss_pred             CCcccce-------EeeccCCCCceeeEEEEecccccceEEEEEeecCCc--eEEEEcCcccceEEEEEcCCCcEEEecc
Confidence            3221110       000111111112222233444677777777665421  1123566889999999999999999999


Q ss_pred             cCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          256 FDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      .|..+.+||+...+.....  .|...|..++..+--+.|+++ +.++.|-.|+...
T Consensus       217 ~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~-~edg~i~~w~mn~  271 (404)
T KOG1409|consen  217 SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISC-GEDGGIVVWNMNV  271 (404)
T ss_pred             ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeec-cCCCeEEEEeccc
Confidence            9999999999776654433  788888888877766777654 5555777776553

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.75  E-value=2e-05  Score=69.80  Aligned_cols=220  Identities=19%  Similarity=0.342  Sum_probs=126.3

Q ss_pred             eeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEc-cCCCceEEEecCCeEEEEeccCCCCcccc
Q 014302          104 GVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR-PNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (427)
Q Consensus       104 ~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~s-p~~~~~la~g~~~~i~iw~~~~~~~~~~~  181 (427)
                      ++.|.+ ++.++.+--..+.|..|+....  ........  . ...+++. +++ .++++. .+.+.++|..        
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~--~~~~~~~~--~-~~G~~~~~~~g-~l~v~~-~~~~~~~d~~--------   68 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG--EVEVIDLP--G-PNGMAFDRPDG-RLYVAD-SGGIAVVDPD--------   68 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT--EEEEEESS--S-EEEEEEECTTS-EEEEEE-TTCEEEEETT--------
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC--eEEEEecC--C-CceEEEEccCC-EEEEEE-cCceEEEecC--------
Confidence            578998 6667777667899988887766  22222211  1 6677777 665 555554 4556666765        


Q ss_pred             ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC----
Q 014302          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD----  257 (427)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d----  257 (427)
                       ++              .+..+.              -.+.+.         ........+++.|+|+..++....    
T Consensus        69 -~g--------------~~~~~~--------------~~~~~~---------~~~~~~ND~~vd~~G~ly~t~~~~~~~~  110 (246)
T PF08450_consen   69 -TG--------------KVTVLA--------------DLPDGG---------VPFNRPNDVAVDPDGNLYVTDSGGGGAS  110 (246)
T ss_dssp             -TT--------------EEEEEE--------------EEETTC---------SCTEEEEEEEE-TTS-EEEEEECCBCTT
T ss_pred             -CC--------------cEEEEe--------------eccCCC---------cccCCCceEEEcCCCCEEEEecCCCccc
Confidence             11              111111              101000         012246678888888866654433    


Q ss_pred             ----CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCC
Q 014302          258 ----GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  333 (427)
Q Consensus       258 ----g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (427)
                          |.|..++.. ++.......-.....++|+|+++.|+++.+....|+.+++......+.......++..     ..+
T Consensus       111 ~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~g  184 (246)
T PF08450_consen  111 GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-----GPG  184 (246)
T ss_dssp             CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-----SSC
T ss_pred             cccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-----CCc
Confidence                456666666 4443334445667899999999999888777778888888754321211110011110     112


Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  396 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  396 (427)
                      ..-.++++.+|+..++.+.+      +.|.+++.. ++++.     .+.-+..  .+.+++|.
T Consensus       185 ~pDG~~vD~~G~l~va~~~~------~~I~~~~p~-G~~~~-----~i~~p~~--~~t~~~fg  233 (246)
T PF08450_consen  185 YPDGLAVDSDGNLWVADWGG------GRIVVFDPD-GKLLR-----EIELPVP--RPTNCAFG  233 (246)
T ss_dssp             EEEEEEEBTTS-EEEEEETT------TEEEEEETT-SCEEE-----EEE-SSS--SEEEEEEE
T ss_pred             CCCcceEcCCCCEEEEEcCC------CEEEEECCC-ccEEE-----EEcCCCC--CEEEEEEE
Confidence            47889999999877765422      459999987 66552     3333322  47788894

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.73  E-value=1.7e-05  Score=68.25  Aligned_cols=216  Identities=15%  Similarity=0.261  Sum_probs=119.9

Q ss_pred             eEEcCCCCEEEEEeCCCeEEEEEccCCCCc---ceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccc
Q 014302          105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAAS  180 (427)
Q Consensus       105 l~~sp~g~~lat~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~  180 (427)
                      ++.+.+|++||+- .|..|.|......-..   .........-.=+-++||||+ .+||.+.. |+|+++|+. ..    
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~-g~----   75 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLM-GS----   75 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecc-cc----
Confidence            5678999999887 5778888655444111   111111222345789999999 77777755 999999986 11    


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc---C---CCEEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP---T---GDYFFAA  254 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp---~---g~~l~~~  254 (427)
                                        ....+.   .. .      .+.  |.          ....|..|.|-+   +   ...|++-
T Consensus        76 ------------------~lf~I~---p~-~------~~~--~d----------~~~Aiagl~Fl~~~~s~~ws~ELlvi  115 (282)
T PF15492_consen   76 ------------------ELFVIP---PA-M------SFP--GD----------LSDAIAGLIFLEYKKSAQWSYELLVI  115 (282)
T ss_pred             ------------------eeEEcC---cc-c------ccC--Cc----------cccceeeeEeeccccccccceeEEEE
Confidence                              111110   00 0      000  00          011222222211   1   1235555


Q ss_pred             ecCCcEEEEEcCCCCcc------ccc---cCCCCeeEEEECCCCCEEEEEEcCCc----------eeeeeeeCCCCCCcc
Q 014302          255 KFDGTFYLWETNTWTSE------PWS---STSGFVTGATWDPEGRMILLAFAGSL----------TLGSIHFASKPPSLD  315 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~~------~~~---~~~~~v~~v~~spdg~~l~~~~~~~~----------~i~~~~~~~~~~~~~  315 (427)
                      ..+|.++-|-+..+...      .+.   .....|.+++|+|.-+.|++++....          -+..|++-+..+-++
T Consensus       116 ~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk  195 (282)
T PF15492_consen  116 NYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK  195 (282)
T ss_pred             eccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE
Confidence            66777777766433211      111   34678999999999888888775442          345566555322111


Q ss_pred             ------cccc--c-----cccccceee----ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          316 ------AHLL--P-----VDLPDIVSL----TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       316 ------~~~~--~-----~~~~~~~~~----~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                            ....  +     ..+.....+    .....|..|..||||+.||++...      |.|.+|++.+..+.
T Consensus       196 ~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~s------G~lsLW~iPsL~~~  264 (282)
T PF15492_consen  196 QVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFS------GSLSLWEIPSLRLQ  264 (282)
T ss_pred             EccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcC------CeEEEEecCcchhh
Confidence                  1100  0     011111111    123479999999999999997544      56999999876554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.70  E-value=8e-07  Score=84.79  Aligned_cols=219  Identities=16%  Similarity=0.247  Sum_probs=134.5

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~  172 (427)
                      +.|.+|  .|..+.|+.+.+.|-+...+|.|.||-+-.+.+-...+.......|.+++|+.||.++..+=.||.|.+=.+
T Consensus        65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv  144 (1189)
T KOG2041|consen   65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV  144 (1189)
T ss_pred             hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence            345666  899999999999999999999999999988755444555556678999999999966555445566655444


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc----cCc------------------
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG----LGT------------------  230 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~----~~~------------------  230 (427)
                      +  ||                     ++. -..++   ......+.|++|.+.+.    .|.                  
T Consensus       145 d--GN---------------------RIw-gKeLk---g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c  197 (1189)
T KOG2041|consen  145 D--GN---------------------RIW-GKELK---GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDC  197 (1189)
T ss_pred             c--cc---------------------eec-chhcc---hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhce
Confidence            3  11                     000 00011   12233667777665411    010                  


Q ss_pred             ------eEEeccCCeEEEEE--------ccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEE
Q 014302          231 ------PIRRGFGGLSILKW--------SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF  296 (427)
Q Consensus       231 ------~~~~~~~~v~~~~~--------sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~  296 (427)
                            .+......+..+.|        -||-..|+++-..|.+.|..-.+..........-.+..+.|+++|..|++++
T Consensus       198 ~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG  277 (1189)
T KOG2041|consen  198 EVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCG  277 (1189)
T ss_pred             EEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEcc
Confidence                  01111112334444        2577899999999999887655554444445557889999999999999876


Q ss_pred             cCCc-----eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEE
Q 014302          297 AGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       297 ~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                      .+.-     ....+++++.-...-+          .....+..|++++|-..|-.+|.+
T Consensus       278 ~~~da~~~~d~n~v~Fysp~G~i~g----------tlkvpg~~It~lsWEg~gLriA~A  326 (1189)
T KOG2041|consen  278 NDSDADEPTDSNKVHFYSPYGHIVG----------TLKVPGSCITGLSWEGTGLRIAIA  326 (1189)
T ss_pred             CcccccCccccceEEEeccchhheE----------EEecCCceeeeeEEcCCceEEEEE
Confidence            5431     1123334332111111          111123368888888777777663

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.68  E-value=5.8e-07  Score=76.95  Aligned_cols=140  Identities=11%  Similarity=0.109  Sum_probs=102.6

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccc
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAAS  180 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~  180 (427)
                      ..++.|++-+..++++-.+|.+.+-+.....-+.......|+-.++-.+|+-....++.+|+| +.+..||+..|++   
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~---  200 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT---  200 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc---
Confidence            457889999999999988999885443333222333456799999999999888788888877 8888999972221   


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCCEEEEEecCCc
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGDYFFAAKFDGT  259 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~dg~  259 (427)
                                                          ..|+          ..+.|..+|.++.-+| .+.+|++|+.|-.
T Consensus       201 ------------------------------------~i~~----------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~  234 (339)
T KOG0280|consen  201 ------------------------------------FIWH----------NSKVHTSGVVSIYSSPPKPTYIATGSYDEC  234 (339)
T ss_pred             ------------------------------------eeee----------cceeeecceEEEecCCCCCceEEEeccccc
Confidence                                                0010          1234667888887764 5678999999999


Q ss_pred             EEEEEcCCCCcccc-ccCCCCeeEEEECCCCC
Q 014302          260 FYLWETNTWTSEPW-SSTSGFVTGATWDPEGR  290 (427)
Q Consensus       260 v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~  290 (427)
                      |++||.|+.....+ ....+.|..++++|.-.
T Consensus       235 i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~  266 (339)
T KOG0280|consen  235 IRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF  266 (339)
T ss_pred             eeeeehhcccCccccCccccceEEEEecchhh
Confidence            99999997655333 35668999999999644

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=1.8e-06  Score=80.45  Aligned_cols=193  Identities=15%  Similarity=0.163  Sum_probs=111.3

Q ss_pred             cCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccC-CCceeee
Q 014302          140 SDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN-GEQITAL  217 (427)
Q Consensus       140 ~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~  217 (427)
                      ..+....+.|..+|||++++|+|.. -.|++||+..                       -.++    +.-|. ...|.-.
T Consensus        48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-----------------------LSLK----FERhlDae~V~fe  100 (703)
T KOG2321|consen   48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-----------------------LSLK----FERHLDAEVVDFE  100 (703)
T ss_pred             cCCccccceeEecCCCcEEEEecccCCceEEEEccc-----------------------ceee----eeecccccceeEE
Confidence            3577788999999999999999987 8899999971                       0101    11111 1112211


Q ss_pred             EeCCCCCC---cccCceEEec-----------cCCeEEEEEc-cCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCee
Q 014302          218 SWGPDGRF---PGLGTPIRRG-----------FGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVT  281 (427)
Q Consensus       218 ~~spdg~~---l~~~~~~~~~-----------~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~  281 (427)
                      -.+-|-..   |..-..+.-|           ...-..++++ |... |+.++....|+-+++..+.- ..+....+.+.
T Consensus       101 iLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scD-ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN  179 (703)
T KOG2321|consen  101 ILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCD-LYLVGSGSEVYRLNLEQGRFLNPFETDSGELN  179 (703)
T ss_pred             EeccchhhheEeecCceeeehhhcCeeeeeecCcCCccccccCCCcc-EEEeecCcceEEEEccccccccccccccccce
Confidence            11111110   0000011111           1123345554 3333 44444466788888888776 44556668899


Q ss_pred             EEEECCCCCEEEEEEcCCceeeeeeeCCCCC-----CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC
Q 014302          282 GATWDPEGRMILLAFAGSLTLGSIHFASKPP-----SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD  356 (427)
Q Consensus       282 ~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d  356 (427)
                      ++..++....|++|+.++    .+.+|+...     .+.....   +...........|+++.|+-+|-.+++   |...
T Consensus       180 ~v~in~~hgLla~Gt~~g----~VEfwDpR~ksrv~~l~~~~~---v~s~pg~~~~~svTal~F~d~gL~~aV---Gts~  249 (703)
T KOG2321|consen  180 VVSINEEHGLLACGTEDG----VVEFWDPRDKSRVGTLDAASS---VNSHPGGDAAPSVTALKFRDDGLHVAV---GTST  249 (703)
T ss_pred             eeeecCccceEEecccCc----eEEEecchhhhhheeeecccc---cCCCccccccCcceEEEecCCceeEEe---eccC
Confidence            999999988888776555    555555321     1111111   000001111226999999999999999   6666


Q ss_pred             cceeEEEEEEeccCceE
Q 014302          357 IYKGLIAIYDARRTPLI  373 (427)
Q Consensus       357 ~~~g~i~vwd~~~~~~~  373 (427)
                         |.|.|||+++...+
T Consensus       250 ---G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  250 ---GSVLIYDLRASKPL  263 (703)
T ss_pred             ---CcEEEEEcccCCce
Confidence               77999999987765

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.66  E-value=7.8e-06  Score=86.50  Aligned_cols=222  Identities=14%  Similarity=0.114  Sum_probs=122.6

Q ss_pred             eeeeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeecc-C---------------CcCCeeEEEEccCCCceEEEe-c
Q 014302          102 LQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTS-D---------------SQRDVKVLEWRPNGGRSLSVG-C  163 (427)
Q Consensus       102 V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~-~---------------~~~~v~~l~~sp~~~~~la~g-~  163 (427)
                      -..++++++++.|.++ ..++.|+++|+...  ....+.. +               .-..-..++|+|++..++++. .
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~--~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNE--TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCC--EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            4788899988866555 44578888887654  1111110 0               011235789999554555444 4


Q ss_pred             CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-cCc-eEEeccCCeEE
Q 014302          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-LGT-PIRRGFGGLSI  241 (427)
Q Consensus       164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~~-~~~~~~~~v~~  241 (427)
                      ++.|.+|+..         .+              .   +.             .+..+|.... .+. ...........
T Consensus       704 ~~~I~v~d~~---------~g--------------~---v~-------------~~~G~G~~~~~~g~~~~~~~~~~P~G  744 (1057)
T PLN02919        704 QHQIWEYNIS---------DG--------------V---TR-------------VFSGDGYERNLNGSSGTSTSFAQPSG  744 (1057)
T ss_pred             CCeEEEEECC---------CC--------------e---EE-------------EEecCCccccCCCCccccccccCccE
Confidence            5888899875         11              0   00             0111111000 000 00011234567


Q ss_pred             EEEccCCCEEE-EEecCCcEEEEEcCCCCccccc--------------c--------CCCCeeEEEECCCCCEEEEEEcC
Q 014302          242 LKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS--------------S--------TSGFVTGATWDPEGRMILLAFAG  298 (427)
Q Consensus       242 ~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~--------------~--------~~~~v~~v~~spdg~~l~~~~~~  298 (427)
                      ++++|+|++|+ +.+.++.|++||+.++......              .        .-.....++++++|..++ +...
T Consensus       745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV-ADs~  823 (1057)
T PLN02919        745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV-ADSY  823 (1057)
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE-EECC
Confidence            99999999666 5566789999998865421110              0        011345889999998544 5556


Q ss_pred             CceeeeeeeCCCCC-Cccccccccccccce-eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          299 SLTLGSIHFASKPP-SLDAHLLPVDLPDIV-SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       299 ~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      +..|.+|+...... .+.+..... ..... ....-.....|+++++|+.+++   +..+   ++|++||+.++..
T Consensus       824 N~rIrviD~~tg~v~tiaG~G~~G-~~dG~~~~a~l~~P~GIavd~dG~lyVa---Dt~N---n~Irvid~~~~~~  892 (1057)
T PLN02919        824 NHKIKKLDPATKRVTTLAGTGKAG-FKDGKALKAQLSEPAGLALGENGRLFVA---DTNN---SLIRYLDLNKGEA  892 (1057)
T ss_pred             CCEEEEEECCCCeEEEEeccCCcC-CCCCcccccccCCceEEEEeCCCCEEEE---ECCC---CEEEEEECCCCcc
Confidence            66888887755321 111100000 00000 0001125688999999986665   5544   6799999988765

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.64  E-value=5.3e-06  Score=78.55  Aligned_cols=162  Identities=17%  Similarity=0.254  Sum_probs=96.8

Q ss_pred             eEEEEEccCCCEEE-EEecCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCcee--eeeeeCCCCCC
Q 014302          239 LSILKWSPTGDYFF-AAKFDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL--GSIHFASKPPS  313 (427)
Q Consensus       239 v~~~~~sp~g~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i--~~~~~~~~~~~  313 (427)
                      ....+|+|||++|+ +...||.  |+++|+.+.....+....+.-....|+|||++++++++..+.-  ++++.......
T Consensus       240 ~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~  319 (425)
T COG0823         240 NGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT  319 (425)
T ss_pred             cCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence            33567999999888 6677776  5566777666544444444455889999999999998777644  33333332110


Q ss_pred             ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee-eeeCCCCCCCcee
Q 014302          314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-FIRGPGDNPKPVA  392 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~  392 (427)
                                  .......+. ....|||||++|+........   -.|.+.|+.++.-....-.+ ..+.+....+-..
T Consensus       320 ------------riT~~~~~~-~~p~~SpdG~~i~~~~~~~g~---~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~  383 (425)
T COG0823         320 ------------RLTFSGGGN-SNPVWSPDGDKIVFESSSGGQ---WDIDKNDLASGGKIRILTSTYLNESPSWAPNGRM  383 (425)
T ss_pred             ------------EeeccCCCC-cCccCCCCCCEEEEEeccCCc---eeeEEeccCCCCcEEEccccccCCCCCcCCCCce
Confidence                        000111111 266799999999996421111   22777777766633332222 2223444444445


Q ss_pred             EEeccCCCCCceeEEEeeCceEEE
Q 014302          393 FSFHDKFKQGPLLSVCWSSGFCCT  416 (427)
Q Consensus       393 ~~f~~~~~~g~~l~v~~~~g~i~~  416 (427)
                      +-|......+..|...-.+|+...
T Consensus       384 i~~~s~~~~~~~l~~~s~~g~~~~  407 (425)
T COG0823         384 IMFSSGQGGGSVLSLVSLDGRVSR  407 (425)
T ss_pred             EEEeccCCCCceEEEeeccceeEE
Confidence            556655555667777778888876

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.62  E-value=5.9e-06  Score=70.07  Aligned_cols=197  Identities=11%  Similarity=0.012  Sum_probs=121.2

Q ss_pred             EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCccccccc
Q 014302          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGA  191 (427)
Q Consensus       113 ~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~  191 (427)
                      .+..++.|.++++.+++........  +-..-.+.+++.++|+ +++++-+| ..|..|.++.+++              
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~se--------------  192 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAV--HNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESE--------------  192 (344)
T ss_pred             ceeeccCCcceeEEEEecCccccee--eccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccc--------------
Confidence            4667788999999888876222211  1111338899999999 55555545 8899998872111              


Q ss_pred             ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc
Q 014302          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE  271 (427)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~  271 (427)
                               +....                         ........-.+.+|+.....+|++..||++.|||++.....
T Consensus       193 ---------y~~~~-------------------------~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  193 ---------YIENI-------------------------YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             ---------eeeee-------------------------EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence                     11110                         11112345567889999999999999999999999986541


Q ss_pred             ------ccccCCCCeeEEEECCCCCE-EEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCC
Q 014302          272 ------PWSSTSGFVTGATWDPEGRM-ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG  344 (427)
Q Consensus       272 ------~~~~~~~~v~~v~~spdg~~-l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g  344 (427)
                            ....|.+.+..+.|++-|.. |++-++.-+.+.++++.+..    .+...+..++.........|..-.|+.++
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~----~~q~I~i~~d~~~~~~tq~ifgt~f~~~n  314 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV----NHQVIVIPDDVERKHNTQHIFGTNFNNEN  314 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc----eeeEEecCccccccccccccccccccCCC
Confidence                  22378999999999986642 33334555566677766642    22222222222222233457777888777


Q ss_pred             CEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          345 ERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       345 ~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      ..+-+   .+++    .+.=|++.+..
T Consensus       315 ~s~~v---~~e~----~~ae~ni~srs  334 (344)
T KOG4532|consen  315 ESNDV---KNEL----QGAEYNILSRS  334 (344)
T ss_pred             ccccc---ccch----hhheeeccccc
Confidence            77655   3332    15556655443

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.59  E-value=1.2e-06  Score=76.74  Aligned_cols=184  Identities=12%  Similarity=0.231  Sum_probs=109.2

Q ss_pred             ceeeeEEcCCCC--EEEEEeCCCeEEEEEccCCCCcc----------------------------------eeeccCCcC
Q 014302          101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSGKDA----------------------------------CILTSDSQR  144 (427)
Q Consensus       101 ~V~~l~~sp~g~--~lat~~~d~~v~vwd~~~~~~~~----------------------------------~~~~~~~~~  144 (427)
                      .|+.+.|.++++  .++..+.|.+|++|.+.......                                  ......|.-
T Consensus        86 KinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHty  165 (433)
T KOG1354|consen   86 KINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTY  165 (433)
T ss_pred             hhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccccee
Confidence            688999999886  55666789999999986542111                                  111235777


Q ss_pred             CeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc---cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC
Q 014302          145 DVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS---VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (427)
Q Consensus       145 ~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (427)
                      -|.+++++.|. ..+.++.+=.|.+|.++......+   +++..+..                     ....|++..|+|
T Consensus       166 hiNSIS~NsD~-Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEe---------------------LteVITsaEFhp  223 (433)
T KOG1354|consen  166 HINSISVNSDK-ETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEE---------------------LTEVITSAEFHP  223 (433)
T ss_pred             EeeeeeecCcc-ceEeeccceeeeeccccccCCceeEEEccccCHHH---------------------HHHHHhhhccCH
Confidence            89999999998 677778887799999875432111   11110000                     011222333333


Q ss_pred             C-----------CCC-cc----------cCc-------e-----EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCC
Q 014302          222 D-----------GRF-PG----------LGT-------P-----IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNT  267 (427)
Q Consensus       222 d-----------g~~-l~----------~~~-------~-----~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~  267 (427)
                      .           |.+ +.          ..+       +     +..--..|..+.|+++|+++++-. --+|++||+..
T Consensus       224 ~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nm  302 (433)
T KOG1354|consen  224 HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNM  302 (433)
T ss_pred             hHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccc
Confidence            1           111 00          000       0     111224688899999999999754 47899999854


Q ss_pred             CCc--cccccC------------C---CCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302          268 WTS--EPWSST------------S---GFVTGATWDPEGRMILLAFAGSLTLGSIHFA  308 (427)
Q Consensus       268 ~~~--~~~~~~------------~---~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~  308 (427)
                      ...  ..+..|            .   ..-..++|+-++.++++|+-.+ ..+++.+.
T Consensus       303 e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n-~frvf~~~  359 (433)
T KOG1354|consen  303 EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN-VFRVFNLA  359 (433)
T ss_pred             cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc-eEEEecCC
Confidence            332  222211            1   2335689999999999876555 55555533

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=1.2e-05  Score=71.68  Aligned_cols=241  Identities=13%  Similarity=0.164  Sum_probs=146.2

Q ss_pred             ceeeeEEcCCCC--EEEEEeCCCeEEEEEccCCCCcce----eeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302          101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSGKDAC----ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~--~lat~~~d~~v~vwd~~~~~~~~~----~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~  174 (427)
                      .|.+++|.-+++  .|...+.|..+....+........    .......+.|..++.. |+ .++++-+.|.+.+|.+..
T Consensus        57 ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k~  134 (412)
T KOG3881|consen   57 RISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDKS  134 (412)
T ss_pred             hhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEeccC
Confidence            677888877665  444444666666665555421111    1223345667777665 55 677777779999999871


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-E
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-A  253 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~  253 (427)
                      +..                               | ..+..-++                ...++..|.-++...+++ +
T Consensus       135 ~d~-------------------------------h-ss~l~~la----------------~g~g~~~~r~~~~~p~Iva~  166 (412)
T KOG3881|consen  135 GDL-------------------------------H-SSKLIKLA----------------TGPGLYDVRQTDTDPYIVAT  166 (412)
T ss_pred             Ccc-------------------------------c-cccceeee----------------cCCceeeeccCCCCCceEec
Confidence            100                               0 11111111                124566677677666666 6


Q ss_pred             EecC--CcEEEEEcCCCCccccc-----------cCCCCeeEEEECCC--CCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302          254 AKFD--GTFYLWETNTWTSEPWS-----------STSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHL  318 (427)
Q Consensus       254 ~~~d--g~v~iwd~~~~~~~~~~-----------~~~~~v~~v~~spd--g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  318 (427)
                      |+..  ..+.|||+...+. .|.           -..-+++++.|-+.  .+.+++++... .++.++....+       
T Consensus       167 GGke~~n~lkiwdle~~~q-iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~h-qvR~YDt~~qR-------  237 (412)
T KOG3881|consen  167 GGKENINELKIWDLEQSKQ-IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYH-QVRLYDTRHQR-------  237 (412)
T ss_pred             Cchhcccceeeeeccccee-eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecce-eEEEecCcccC-------
Confidence            8888  7899999987733 222           12235678888886  67777766444 44444333221       


Q ss_pred             cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  398 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  398 (427)
                      .|+    ........+|+++...|+|+++.+   +...   |.+..||++.+.+.-..    +.+.  ...+..+.-||.
T Consensus       238 RPV----~~fd~~E~~is~~~l~p~gn~Iy~---gn~~---g~l~~FD~r~~kl~g~~----~kg~--tGsirsih~hp~  301 (412)
T KOG3881|consen  238 RPV----AQFDFLENPISSTGLTPSGNFIYT---GNTK---GQLAKFDLRGGKLLGCG----LKGI--TGSIRSIHCHPT  301 (412)
T ss_pred             cce----eEeccccCcceeeeecCCCcEEEE---eccc---chhheecccCceeeccc----cCCc--cCCcceEEEcCC
Confidence            111    011111237899999999999988   5544   56999999998876322    2232  222446767875


Q ss_pred             CCCCceeEEEeeCceEEEEec
Q 014302          399 FKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       399 ~~~g~~l~v~~~~g~i~~~~~  419 (427)
                         +.+||.|.-|-.+.+|++
T Consensus       302 ---~~~las~GLDRyvRIhD~  319 (412)
T KOG3881|consen  302 ---HPVLASCGLDRYVRIHDI  319 (412)
T ss_pred             ---CceEEeeccceeEEEeec
Confidence               678999989998888875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.54  E-value=0.0002  Score=65.76  Aligned_cols=120  Identities=10%  Similarity=0.127  Sum_probs=68.8

Q ss_pred             EECC-CCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce---eeccCCceeEEEECCCCCEEEEEEecCC----
Q 014302          284 TWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV---SLTGSQGIEKIAWDASGERLAVSYKGGD----  355 (427)
Q Consensus       284 ~~sp-dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~v~~sp~g~~La~~~~~~~----  355 (427)
                      .|++ +|+++..+..  +.++.+++........   .++......   .--..+.+.-++++|+++.|.+...+..    
T Consensus       200 ~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~---~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~th  274 (352)
T TIGR02658       200 AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFL---PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTH  274 (352)
T ss_pred             ceEcCCCcEEEEecC--CeEEEEecCCCcceec---ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccc
Confidence            3455 7877776544  6888888765422110   011100000   0011224455999999999988432211    


Q ss_pred             CcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc-eeEEEe-eCceEEEEec
Q 014302          356 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP-LLSVCW-SSGFCCTYPL  419 (427)
Q Consensus       356 d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~-~l~v~~-~~g~i~~~~~  419 (427)
                      ......|.++|+++++.+...+.|.        .+..++|.|+   |. +|-+.. .++.|.+++.
T Consensus       275 k~~~~~V~ViD~~t~kvi~~i~vG~--------~~~~iavS~D---gkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       275 KTASRFLFVVDAKTGKRLRKIELGH--------EIDSINVSQD---AKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             cCCCCEEEEEECCCCeEEEEEeCCC--------ceeeEEECCC---CCeEEEEeCCCCCcEEEEEC
Confidence            0011359999999998874443321        3568888886   45 554444 6888999984

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.50  E-value=7.6e-06  Score=74.75  Aligned_cols=142  Identities=13%  Similarity=0.248  Sum_probs=101.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCC-eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGST-QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .|+-..+.-+++-++.|..|| .+-|+|...+  +.. ...+.-+.|.++..+|+| +.++++.+ ..+.+.|++     
T Consensus       361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~--e~k-r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vidid-----  431 (668)
T COG4946         361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG--EVK-RIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDID-----  431 (668)
T ss_pred             ceEEEEEccCCcceEEeccCCceEEEEecCCc--eEE-EeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEec-----
Confidence            688888888888899999998 8899998877  323 333455789999999999 55555655 666666776     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                          ++              ..+.+.   ..                         ..+-|+.+.|||+++++|.+--+|
T Consensus       432 ----ng--------------nv~~id---kS-------------------------~~~lItdf~~~~nsr~iAYafP~g  465 (668)
T COG4946         432 ----NG--------------NVRLID---KS-------------------------EYGLITDFDWHPNSRWIAYAFPEG  465 (668)
T ss_pred             ----CC--------------CeeEec---cc-------------------------ccceeEEEEEcCCceeEEEecCcc
Confidence                11              212221   11                         134567777888888888555444


Q ss_pred             ----cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEc
Q 014302          259 ----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA  297 (427)
Q Consensus       259 ----~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~  297 (427)
                          .|++||+..++........+.-.+.+|.|||++|.+-+.
T Consensus       466 y~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         466 YYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             eeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence                589999999888666666677788999999999987654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.48  E-value=3.7e-06  Score=76.93  Aligned_cols=240  Identities=13%  Similarity=0.136  Sum_probs=132.3

Q ss_pred             ccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee
Q 014302          139 TSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (427)
Q Consensus       139 ~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (427)
                      ...|.+.|..|.|+..| .+|++|++ ..|.+||+...........|                         +...|...
T Consensus       138 L~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SG-------------------------H~~NvfQa  191 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESG-------------------------HCNNVFQA  191 (559)
T ss_pred             ccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccc-------------------------cccchhhh
Confidence            35699999999999999 67777766 88999999732222222222                         12222222


Q ss_pred             EeCC------------CCCC-----cccC-----ceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccc
Q 014302          218 SWGP------------DGRF-----PGLG-----TPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS  274 (427)
Q Consensus       218 ~~sp------------dg~~-----l~~~-----~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~  274 (427)
                      .|-|            ||+.     +.++     +.+..|.+.|.-++.-|+..+-+ +++.|+.+.-+|++........
T Consensus       192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~  271 (559)
T KOG1334|consen  192 KFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF  271 (559)
T ss_pred             hccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence            2222            2211     1111     12345889999999999887655 9999999999999887763222


Q ss_pred             ----cCCC---CeeEEEECCCCCEE-EEEEcCCceeeeeeeCCCCC-Cccc---cccccccccceeeccCCceeEEEECC
Q 014302          275 ----STSG---FVTGATWDPEGRMI-LLAFAGSLTLGSIHFASKPP-SLDA---HLLPVDLPDIVSLTGSQGIEKIAWDA  342 (427)
Q Consensus       275 ----~~~~---~v~~v~~spdg~~l-~~~~~~~~~i~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~i~~v~~sp  342 (427)
                          .+..   ...+++..|-+.+. ++++.+. ..++++...... ...+   +..|-.+.    ....-.|++++|+.
T Consensus       272 ~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq-f~RvYD~R~~~~e~~n~~~~~f~p~hl~----~d~~v~ITgl~Ysh  346 (559)
T KOG1334|consen  272 VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ-FARVYDQRRIDKEENNGVLDKFCPHHLV----EDDPVNITGLVYSH  346 (559)
T ss_pred             eeeccCCccceeeeeEecCCCCccccccCChhh-hhhhhcccchhhccccchhhhcCCcccc----ccCcccceeEEecC
Confidence                2333   56788889987744 4444333 333333332110 0111   11111110    01223799999996


Q ss_pred             CCCEEEEEEecCCCcceeEEEEEEeccCce---EEEee-----eeeeeCCCCCCCceeEE-eccCCCCCceeEEEeeCce
Q 014302          343 SGERLAVSYKGGDDIYKGLIAIYDARRTPL---ISLSL-----IGFIRGPGDNPKPVAFS-FHDKFKQGPLLSVCWSSGF  413 (427)
Q Consensus       343 ~g~~La~~~~~~~d~~~g~i~vwd~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~-f~~~~~~g~~l~v~~~~g~  413 (427)
                      ++.-|.+++.+- +     |++|.-..+.-   ..+.|     .....|.......-.+- |.|+.   .-+..|...|+
T Consensus       347 ~~sElLaSYnDe-~-----IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs---EyVvSGSDCGh  417 (559)
T KOG1334|consen  347 DGSELLASYNDE-D-----IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS---EYVVSGSDCGH  417 (559)
T ss_pred             Cccceeeeeccc-c-----eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc---ceEEecCccce
Confidence            665555544443 2     88884322111   11110     01112222222223343 44443   35888999999


Q ss_pred             EEEEe
Q 014302          414 CCTYP  418 (427)
Q Consensus       414 i~~~~  418 (427)
                      |-||+
T Consensus       418 IFiW~  422 (559)
T KOG1334|consen  418 IFIWD  422 (559)
T ss_pred             EEEEe
Confidence            99997

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=98.47  E-value=2.5e-06  Score=84.77  Aligned_cols=152  Identities=13%  Similarity=0.015  Sum_probs=109.2

Q ss_pred             eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccc
Q 014302          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~  182 (427)
                      .-+.++++.-++++|+.-+.|.+|++...  .......+|.+.+.++.|+-||..++.++.|.++++|.++         
T Consensus       137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~d--n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~---------  205 (967)
T KOG0974|consen  137 LIIGDSAEELYIASGSVFGEIIVWKPHED--NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPID---------  205 (967)
T ss_pred             EEEeccCcEEEEEeccccccEEEEecccc--CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecc---------
Confidence            33456777779999999999999998844  2333567899999999999999545555566999999998         


Q ss_pred             cCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEE
Q 014302          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL  262 (427)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~i  262 (427)
                      ++                           ....+              ..-+|...++.+.|.|+  ++++++.|-+.++
T Consensus       206 s~---------------------------~~~~~--------------~~fgHsaRvw~~~~~~n--~i~t~gedctcrv  242 (967)
T KOG0974|consen  206 SR---------------------------EVLGC--------------TGFGHSARVWACCFLPN--RIITVGEDCTCRV  242 (967)
T ss_pred             cc---------------------------cccCc--------------ccccccceeEEEEeccc--eeEEeccceEEEE
Confidence            11                           00001              12247788999999998  8999999999999


Q ss_pred             EEcCCCCccccccC-CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          263 WETNTWTSEPWSST-SGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       263 wd~~~~~~~~~~~~-~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      |+....+...+..| ...+..++..++...++ ++.+++.++.|++..
T Consensus       243 W~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~v-T~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  243 WGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKV-TGGNDSTLKLWDLNG  289 (967)
T ss_pred             EecccceehhhhhhhhcceeEEEEcCCceEEE-eeccCcchhhhhhhc
Confidence            97665555555544 45677888777555554 556666777776543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=6.6e-05  Score=72.80  Aligned_cols=250  Identities=14%  Similarity=0.182  Sum_probs=139.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC-----------CCceEEEecC-CeEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN-----------GGRSLSVGCK-GGIC  168 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-----------~~~~la~g~~-~~i~  168 (427)
                      .-.++.|+|.| +||.|+.. .|.|-|.-..  +.......|+..|+.+.|.|-           ...+||++.. |.|.
T Consensus        17 N~~A~Dw~~~G-LiAygshs-lV~VVDs~s~--q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSHS-LVSVVDSRSL--QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             cccccccCccc-eEEEecCc-eEEEEehhhh--hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            56788999988 78888644 6667554444  555666778899999999873           2235666655 8899


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG  248 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g  248 (427)
                      +||..         .+                ..+..+..+ ..++..++|-                      -+.++.
T Consensus        93 l~d~~---------~~----------------s~~~~l~~~-~~~~qdl~W~----------------------~~rd~S  124 (1062)
T KOG1912|consen   93 LVDFV---------LA----------------SVINWLSHS-NDSVQDLCWV----------------------PARDDS  124 (1062)
T ss_pred             EEEeh---------hh----------------hhhhhhcCC-Ccchhheeee----------------------eccCcc
Confidence            99987         11                111122222 3333333332                      223455


Q ss_pred             C-EEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeee-CCCCCCccccccccccc
Q 014302          249 D-YFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHF-ASKPPSLDAHLLPVDLP  324 (427)
Q Consensus       249 ~-~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~  324 (427)
                      + .|++-....++.+|+..+++.. +.........++.+.| |.+++.+-+..+ .+...++ ....+...++...+.-+
T Consensus       125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g-~vl~~~~l~~sep~~pgk~~qI~sd  203 (1062)
T KOG1912|consen  125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKG-FVLSCKDLGLSEPDVPGKEFQITSD  203 (1062)
T ss_pred             hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCc-eEEEEeccCCCCCCCCceeEEEecC
Confidence            3 4455556788999999988763 2333444556688888 445555544444 4444333 22333223332222110


Q ss_pred             --c---ce-----eeccCC---------ceeEEEECCCCCEEEE-EEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302          325 --D---IV-----SLTGSQ---------GIEKIAWDASGERLAV-SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP  384 (427)
Q Consensus       325 --~---~~-----~~~~~~---------~i~~v~~sp~g~~La~-~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~  384 (427)
                        +   ..     ......         -...++|+|.-+.+.. .+ -      .-+.|+|++-..++...|.     +
T Consensus       204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-p------rellv~dle~~~~l~vvpi-----e  271 (1062)
T KOG1912|consen  204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-P------RELLVFDLEYECCLAVVPI-----E  271 (1062)
T ss_pred             ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-c------cceEEEcchhhceeEEEEe-----c
Confidence              0   00     000000         1234678887654433 22 2      2299999998877754432     1


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      ...  +.-+.+.|.++...|.++= .+|++.++-
T Consensus       272 r~~--akfv~vlP~~~rd~LfclH-~nG~ltirv  302 (1062)
T KOG1912|consen  272 RGG--AKFVDVLPDPRRDALFCLH-SNGRLTIRV  302 (1062)
T ss_pred             cCC--cceeEeccCCCcceEEEEe-cCCeEEEEE
Confidence            122  2356677877655555554 999998875

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.44  E-value=5.3e-06  Score=77.67  Aligned_cols=147  Identities=14%  Similarity=0.095  Sum_probs=108.5

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCccccc
Q 014302          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFL  189 (427)
Q Consensus       110 ~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~  189 (427)
                      +...|+-|...|.|.+|+...+.-........|.+.|.++.|+.+-..+..+|.+..+..|+..                
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~----------------  132 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK----------------  132 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc----------------
Confidence            3447888888999999988877443444446799999999999887567777778999999986                


Q ss_pred             ccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCC
Q 014302          190 GALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT  269 (427)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~  269 (427)
                                           ...+.+..              ......+.+++++|||+.|++++  +.|++||+.+.+
T Consensus       133 ---------------------~~~~~~~~--------------~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke  175 (541)
T KOG4547|consen  133 ---------------------EKVIIRIW--------------KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE  175 (541)
T ss_pred             ---------------------cceeeeee--------------ccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce
Confidence                                 11111111              11234577899999999999876  789999999998


Q ss_pred             c-cccccCCCCeeEEEECCC-----CCEEEEEEcCCceeeeeeeCC
Q 014302          270 S-EPWSSTSGFVTGATWDPE-----GRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       270 ~-~~~~~~~~~v~~v~~spd-----g~~l~~~~~~~~~i~~~~~~~  309 (427)
                      . ..+.+|.+.|.++.|.-+     |.+++++......+..|.+..
T Consensus       176 vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  176 VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            8 667799999999999877     788887655444444454443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.43  E-value=5.7e-06  Score=78.37  Aligned_cols=186  Identities=17%  Similarity=0.292  Sum_probs=107.6

Q ss_pred             ceeeeEEcCCCCEEEEEeC---C-CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCC
Q 014302          101 DLQGVSWHQHKHIVAFISG---S-TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~---d-~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~  175 (427)
                      .+..-+|+|+++.++..+.   . ..+.+++++.+.......   ..+.-...+|+|||++++.+... +...||-++..
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            5667789999998776532   2 358888888874433333   23344667999999777666654 66666665511


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EE
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AA  254 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~  254 (427)
                      +.                     .   ..                          .+....+.-..-.|+|||++|+ ++
T Consensus       271 ~~---------------------~---~~--------------------------~Lt~~~gi~~~Ps~spdG~~ivf~S  300 (425)
T COG0823         271 GK---------------------N---LP--------------------------RLTNGFGINTSPSWSPDGSKIVFTS  300 (425)
T ss_pred             CC---------------------c---ce--------------------------ecccCCccccCccCCCCCCEEEEEe
Confidence            11                     0   00                          0001111222456899999988 66


Q ss_pred             ecCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302          255 KFDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       255 ~~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      +..|.  |.++|........+......-....|||||+++++....++. ..+...+...          ......+...
T Consensus       301 dr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~-~~i~~~~~~~----------~~~~~~lt~~  369 (425)
T COG0823         301 DRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQ-WDIDKNDLAS----------GGKIRILTST  369 (425)
T ss_pred             CCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCc-eeeEEeccCC----------CCcEEEcccc
Confidence            66666  555566655554444333333388899999999987744333 2222222100          0001122222


Q ss_pred             CceeEEEECCCCCEEEEE
Q 014302          333 QGIEKIAWDASGERLAVS  350 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~  350 (427)
                      ......+|.++|+.+...
T Consensus       370 ~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         370 YLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             ccCCCCCcCCCCceEEEe
Confidence            344567899999999874

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.41  E-value=0.00018  Score=62.05  Aligned_cols=172  Identities=16%  Similarity=0.136  Sum_probs=95.9

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-------cCCCCeeEEEECCCC-----CEEEEEEcCCceeeee
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEG-----RMILLAFAGSLTLGSI  305 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~v~~spdg-----~~l~~~~~~~~~i~~~  305 (427)
                      .-+.++||||+..||.+...|+|+++|+.........       .....|..+.|-+.-     .+.+..-...+.++.+
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            3457999999999999999999999998754432111       233456666665432     1111122334455555


Q ss_pred             eeCCC--CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCccee-------EEEEEEeccCceEEE-
Q 014302          306 HFASK--PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKG-------LIAIYDARRTPLISL-  375 (427)
Q Consensus       306 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g-------~i~vwd~~~~~~~~~-  375 (427)
                      .+...  +.-.+.|....      .......|.++.++|..++|+++  |++....+       -+..|.+-+....-. 
T Consensus       125 ~vs~gt~q~y~e~hsfsf------~~~yp~Gi~~~vy~p~h~LLlVg--G~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSF------SSHYPHGINSAVYHPKHRLLLVG--GCEQNQDGMSKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             EEEcccCCcceeeEEEEe------cccCCCceeEEEEcCCCCEEEEe--ccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence            54321  11111111100      01123479999999999999885  44332211       266787744322111 


Q ss_pred             --------------------eeeeeeeC-CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          376 --------------------SLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       376 --------------------~~~~~~~~-~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                                          ....+... ..+......|+..|+   |.+|++.-.+|.|.+|.+.
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd---g~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD---GSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC---CCEEEEEEcCCeEEEEecC
Confidence                                01111111 111223445666665   8899999999999999874

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.40  E-value=2e-06  Score=90.04  Aligned_cols=171  Identities=12%  Similarity=0.203  Sum_probs=114.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.++.=||...+-+||+.||.|++|.+..+.. .......-...|+.+.|+.+|..+=++-+||.+.+|.+. +.-   
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~-v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~--- 2284 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ-VVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP--- 2284 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCe-EEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc---
Confidence            688888899999999999999999999887733 223333334789999999999767666688999999986 110   


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEe----------CCCCCCcccCc---------eEEeccCCeEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW----------GPDGRFPGLGT---------PIRRGFGGLSI  241 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----------spdg~~l~~~~---------~~~~~~~~v~~  241 (427)
                      .                      ...+.| ....+.+.|          ++|++-+....         +-..|.+++++
T Consensus      2285 ~----------------------~s~qch-nk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2285 Y----------------------TSWQCH-NKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATV 2341 (2439)
T ss_pred             e----------------------eccccC-CccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceE
Confidence            0                      001111 111111111          23332211110         11558899999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      +++-|..+.|++|+.+|.|++||++..+.. .+..         +. ...+++.+ +..+.+++|++..-
T Consensus      2342 l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~-ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTG-SSEGNIKIWRLSEF 2400 (2439)
T ss_pred             EEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeecc-CcccceEEEEcccc
Confidence            999999999999999999999999876653 2222         33 34455554 55558889988774

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.35  E-value=0.00029  Score=62.56  Aligned_cols=225  Identities=17%  Similarity=0.142  Sum_probs=122.4

Q ss_pred             eeeEEcCC-CCEEEEEeCCC-eEEEEEccCCCCcceeeccCCcC--CeeEEEEccCCCceEEEec-----CCeEEEEecc
Q 014302          103 QGVSWHQH-KHIVAFISGST-QVIVRDYEDSGKDACILTSDSQR--DVKVLEWRPNGGRSLSVGC-----KGGICIWAPS  173 (427)
Q Consensus       103 ~~l~~sp~-g~~lat~~~d~-~v~vwd~~~~~~~~~~~~~~~~~--~v~~l~~sp~~~~~la~g~-----~~~i~iw~~~  173 (427)
                      ..++.+|+ ...+|.+-.-| ...+||..++.  .........+  -.-.-.|||||..++++-.     .+.|-|||..
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~--~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQ--LLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCc--eeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            46778884 45677776655 44678887762  2222211111  1123579999965555543     3567799986


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CE-E
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DY-F  251 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~-l  251 (427)
                                              ..+..+..+..+ ......+.|.|||+.|..      -.++|   .-+|+. +. |
T Consensus        86 ------------------------~~~~ri~E~~s~-GIGPHel~l~pDG~tLvV------ANGGI---~Thpd~GR~kL  131 (305)
T PF07433_consen   86 ------------------------RGYRRIGEFPSH-GIGPHELLLMPDGETLVV------ANGGI---ETHPDSGRAKL  131 (305)
T ss_pred             ------------------------CCcEEEeEecCC-CcChhhEEEcCCCCEEEE------EcCCC---ccCcccCceec
Confidence                                    022333334333 222346667777743320      11111   112322 22 2


Q ss_pred             EEEecCCcEEEEEcCCCCcc-c--c--ccCCCCeeEEEECCCCCEEEEEEcCCc-------eeeeeeeCCCCCCcccccc
Q 014302          252 FAAKFDGTFYLWETNTWTSE-P--W--SSTSGFVTGATWDPEGRMILLAFAGSL-------TLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       252 ~~~~~dg~v~iwd~~~~~~~-~--~--~~~~~~v~~v~~spdg~~l~~~~~~~~-------~i~~~~~~~~~~~~~~~~~  319 (427)
                      =..+++-++...|..+++.. +  +  ..|...+..+++.++|..++. ....+       .+..+.-...       ..
T Consensus       132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a-~Q~qg~~~~~~PLva~~~~g~~-------~~  203 (305)
T PF07433_consen  132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFA-MQYQGDPGDAPPLVALHRRGGA-------LR  203 (305)
T ss_pred             ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEE-EecCCCCCccCCeEEEEcCCCc-------ce
Confidence            24445556666777777752 2  2  247778999999999887653 32221       1111111110       11


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                      ....+........+.|-+|+++++|.++|+++--+     +.+.+||..++.++...
T Consensus       204 ~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG-----g~~~~~d~~tg~~~~~~  255 (305)
T PF07433_consen  204 LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG-----GRVAVWDAATGRLLGSV  255 (305)
T ss_pred             eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC-----CEEEEEECCCCCEeecc
Confidence            11222222222344789999999999998864433     67999999999987544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.33  E-value=1.8e-05  Score=70.95  Aligned_cols=157  Identities=18%  Similarity=0.144  Sum_probs=101.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-cceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~  176 (427)
                      .+..+..++.+++||++..+....++++..... ........-...-+++.|-.+....+.+-..   ..+.+|...   
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~---  140 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSAD---  140 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccc---
Confidence            345556789999999998888877887776632 1111111222333444454444333332222   233344433   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                                                                    .   ..+.++-+|..-++.++|+||+++|+++..
T Consensus       141 ----------------------------------------------~---~~~~~~lGhvSml~dVavS~D~~~IitaDR  171 (390)
T KOG3914|consen  141 ----------------------------------------------S---GRCEPILGHVSMLLDVAVSPDDQFIITADR  171 (390)
T ss_pred             ----------------------------------------------c---cCcchhhhhhhhhheeeecCCCCEEEEecC
Confidence                                                          0   123345567778999999999999999999


Q ss_pred             CCcEEEEEcCCCCc-cccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302          257 DGTFYLWETNTWTS-EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  311 (427)
Q Consensus       257 dg~v~iwd~~~~~~-~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~  311 (427)
                      |..||+-....... ..+. +|+..|..++.-++ +.|+++ ++|++++.|++.+.+
T Consensus       172 DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~-sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  172 DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSG-SGDKTLRLWDITSGK  226 (390)
T ss_pred             CceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeec-CCCCcEEEEecccCC
Confidence            99999977654433 3444 89999999999874 456655 566699999988753

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=8.2e-07  Score=86.70  Aligned_cols=186  Identities=16%  Similarity=0.202  Sum_probs=123.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCe--EEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG--ICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~--i~iw~~~~~~~~  178 (427)
                      ..+|++|+-+.+.|++|+..|.|+++++.++  ........|...|+.+.=+.||..+|.++....  ..+|++..    
T Consensus      1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~sG--~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s---- 1176 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG--SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS---- 1176 (1516)
T ss_pred             ceeeEEeecCCceEEeeeccceEEEEEccCc--cccccccccccccccccccCCcceeeeeccccCchHHHhcccc----
Confidence            6899999999999999999999999999988  444556789999999999999977777665533  45899860    


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                          +                      +.                        .+.....-.++.|+..-..-+.|+...
T Consensus      1177 ----~----------------------~~------------------------~~Hsf~ed~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1177 ----T----------------------GG------------------------PRHSFDEDKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred             ----c----------------------cC------------------------ccccccccceeehhhhHHHHHhccccc
Confidence                0                      00                        000123445677877665556677777


Q ss_pred             cEEEEEcCCCCc-cccc----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCC
Q 014302          259 TFYLWETNTWTS-EPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  333 (427)
Q Consensus       259 ~v~iwd~~~~~~-~~~~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (427)
                      ...+||+++... .++.    +....-..+.|||+...++   +++ .+|.++.......++         ... ...  
T Consensus      1207 ~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG-vLWDvR~~~aIh~FD---------~ft-~~~-- 1270 (1516)
T KOG1832|consen 1207 DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG-VLWDVRIPEAIHRFD---------QFT-DYG-- 1270 (1516)
T ss_pred             ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc-eeeeeccHHHHhhhh---------hhe-ecc--
Confidence            899999999876 3322    3333447788999988775   333 443333332211111         111 111  


Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                         .=.|+|+|..++.   .++        |||+++-.+
T Consensus      1271 ---~G~FHP~g~eVII---NSE--------IwD~RTF~l 1295 (1516)
T KOG1832|consen 1271 ---GGGFHPSGNEVII---NSE--------IWDMRTFKL 1295 (1516)
T ss_pred             ---cccccCCCceEEe---ech--------hhhhHHHHH
Confidence               1158999998877   544        899887443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.27  E-value=1.5e-05  Score=71.36  Aligned_cols=113  Identities=12%  Similarity=0.185  Sum_probs=73.9

Q ss_pred             EEEccCCCEEEEE---ecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302          242 LKWSPTGDYFFAA---KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  318 (427)
Q Consensus       242 ~~~sp~g~~l~~~---~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  318 (427)
                      +.+-.+...+..+   ++...+.+|....+.+....+|-.-+..++|+||+++++++..++ .|++.++...   +..+.
T Consensus       113 i~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDE-kIRvs~ypa~---f~Ies  188 (390)
T KOG3914|consen  113 ISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDE-KIRVSRYPAT---FVIES  188 (390)
T ss_pred             eeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCc-eEEEEecCcc---cchhh
Confidence            3343444444433   344556666666677788889999999999999999999865444 7777766653   11111


Q ss_pred             cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      .        .+.|..-|..++.-++ ..|++   ++.|   ++|++||+.++..+
T Consensus       189 f--------clGH~eFVS~isl~~~-~~LlS---~sGD---~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  189 F--------CLGHKEFVSTISLTDN-YLLLS---GSGD---KTLRLWDITSGKLL  228 (390)
T ss_pred             h--------ccccHhheeeeeeccC-ceeee---cCCC---CcEEEEecccCCcc
Confidence            1        1123336788887765 44666   5666   67999999998765

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.26  E-value=2.9e-06  Score=51.09  Aligned_cols=34  Identities=26%  Similarity=0.725  Sum_probs=31.5

Q ss_pred             eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 014302          231 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE  264 (427)
Q Consensus       231 ~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd  264 (427)
                      .++.|...|.+++|+|++.+|++++.|+.|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567889999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.26  E-value=9.2e-05  Score=65.17  Aligned_cols=243  Identities=17%  Similarity=0.140  Sum_probs=137.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~  179 (427)
                      .|++...-|..+-+.+.+.|.++|||--......-..+++....++++++++++. +.|.+|.+ +++.-+.+..+-|  
T Consensus        26 ~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfn--  102 (404)
T KOG1409|consen   26 DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFN--  102 (404)
T ss_pred             hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhh--
Confidence            5666667777778899999999999954333333445556677889999999998 78888876 7777666541111  


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                                            .+..+                       .....|...+..+-|+-...++++.+.|..
T Consensus       103 ----------------------km~~~-----------------------r~~~~h~~~v~~~if~~~~e~V~s~~~dk~  137 (404)
T KOG1409|consen  103 ----------------------KMTFL-----------------------KDYLAHQARVSAIVFSLTHEWVLSTGKDKQ  137 (404)
T ss_pred             ----------------------hcchh-----------------------hhhhhhhcceeeEEecCCceeEEEeccccc
Confidence                                  00000                       112336677888888888888888888887


Q ss_pred             EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEE
Q 014302          260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA  339 (427)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  339 (427)
                      +.---.+++....-........++.+.-.   .++.+...+.+....+......+      +    .....+.+.+.+++
T Consensus       138 ~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~------i----~~~~~h~~~~~~l~  204 (404)
T KOG1409|consen  138 FAWHCTESGNRLGGYNFETPASALQFDAL---YAFVGDHSGQITMLKLEQNGCQL------I----TTFNGHTGEVTCLK  204 (404)
T ss_pred             eEEEeeccCCcccceEeeccCCCCceeeE---EEEecccccceEEEEEeecCCce------E----EEEcCcccceEEEE
Confidence            75544444443110000000011111100   12222333344344333321100      0    11122334889999


Q ss_pred             ECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          340 WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       340 ~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      |+|..+.|.+   +..|   ..|.+||+-.++-....+.|.-..    ..  .+++.+.   -..|-.+-.||.|.+|++
T Consensus       205 Wd~~~~~LfS---g~~d---~~vi~wdigg~~g~~~el~gh~~k----V~--~l~~~~~---t~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  205 WDPGQRLLFS---GASD---HSVIMWDIGGRKGTAYELQGHNDK----VQ--ALSYAQH---TRQLISCGEDGGIVVWNM  269 (404)
T ss_pred             EcCCCcEEEe---cccc---CceEEEeccCCcceeeeeccchhh----hh--hhhhhhh---heeeeeccCCCeEEEEec
Confidence            9999999977   6666   459999997766555544443221    11  1112111   223445558888888875

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.19  E-value=0.001  Score=58.91  Aligned_cols=156  Identities=19%  Similarity=0.217  Sum_probs=85.8

Q ss_pred             eEEEEEc-cCCCEEEEEecCCcEEEEEcCCCCcccccc------CCCCeeEEEECCCCCEEEEEEcCC-------ceeee
Q 014302          239 LSILKWS-PTGDYFFAAKFDGTFYLWETNTWTSEPWSS------TSGFVTGATWDPEGRMILLAFAGS-------LTLGS  304 (427)
Q Consensus       239 v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~v~~spdg~~l~~~~~~~-------~~i~~  304 (427)
                      ...+++. +++ .|+.+.. +.+.++|..+++...+..      .......+++.|+|+..++.....       +.++.
T Consensus        42 ~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            5566777 565 4454443 455666988876543331      345678999999999665433221       22333


Q ss_pred             eeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP  384 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~  384 (427)
                      +....+...              ....-...+.++|+|+++.|.++  .+..   +.|..|++.........+.-+....
T Consensus       120 ~~~~~~~~~--------------~~~~~~~pNGi~~s~dg~~lyv~--ds~~---~~i~~~~~~~~~~~~~~~~~~~~~~  180 (246)
T PF08450_consen  120 IDPDGKVTV--------------VADGLGFPNGIAFSPDGKTLYVA--DSFN---GRIWRFDLDADGGELSNRRVFIDFP  180 (246)
T ss_dssp             EETTSEEEE--------------EEEEESSEEEEEEETTSSEEEEE--ETTT---TEEEEEEEETTTCCEEEEEEEEE-S
T ss_pred             ECCCCeEEE--------------EecCcccccceEECCcchheeec--cccc---ceeEEEeccccccceeeeeeEEEcC
Confidence            333311000              01111256899999999998875  4433   4588888864332111111122222


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .....+-.+++..   +|.+..+.|..|+|..|+
T Consensus       181 ~~~g~pDG~~vD~---~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  181 GGPGYPDGLAVDS---DGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             SSSCEEEEEEEBT---TS-EEEEEETTTEEEEEE
T ss_pred             CCCcCCCcceEcC---CCCEEEEEcCCCEEEEEC
Confidence            2222244566655   478888889999999886

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.17  E-value=9.2e-05  Score=63.01  Aligned_cols=149  Identities=9%  Similarity=0.091  Sum_probs=99.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee-ccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~  178 (427)
                      .+.++++++|++++++.+....|..|.++........+ .....+.-.+.+|+... ..+|++ .++++.|||+...+.+
T Consensus       160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEecCCcEEEEEecccccc
Confidence            47899999999999999999999999988773333222 22233445678999887 566666 4599999999721111


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC--EEEEEec
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD--YFFAAKF  256 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~  256 (427)
                      ....                                              .+.-+.|.+.+..+.|++-|.  +|+..-.
T Consensus       239 m~~~----------------------------------------------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh  272 (344)
T KOG4532|consen  239 MAEI----------------------------------------------SSTRPHHNGAFRVCRFSLYGLLDLLFISEH  272 (344)
T ss_pred             hhhh----------------------------------------------cccCCCCCCceEEEEecCCCcceEEEEecC
Confidence            1100                                              011223678899999998664  5666666


Q ss_pred             CCcEEEEEcCCCCccccc--------cCC-CCeeEEEECCCCCEEEEEE
Q 014302          257 DGTFYLWETNTWTSEPWS--------STS-GFVTGATWDPEGRMILLAF  296 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~--------~~~-~~v~~v~~spdg~~l~~~~  296 (427)
                      -+.+.+.|+++....+..        .|. ..+..-+|+.++..+.+..
T Consensus       273 fs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~  321 (344)
T KOG4532|consen  273 FSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKN  321 (344)
T ss_pred             cceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccccc
Confidence            788999999988753222        222 3367777777777665543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.06  E-value=8.4e-06  Score=71.55  Aligned_cols=125  Identities=11%  Similarity=0.085  Sum_probs=87.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEcc-CCCceEEEecCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp-~~~~~la~g~~~~i~iw~~~~~~~  177 (427)
                      +|.++.|+-.++++..|..+|.|.+.|+...  +........-|...|+++.--. +++.++|++.++.|++||..+.+.
T Consensus       254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~  333 (425)
T KOG2695|consen  254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC  333 (425)
T ss_pred             hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence            8999999999999999999999999999765  2223333345788899988776 555788888889999999971100


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                            +                +-+..+.+|    |...                    ...-+...+....++++++|
T Consensus       334 ------~----------------~~V~qYeGH----vN~~--------------------a~l~~~v~~eeg~I~s~GdD  367 (425)
T KOG2695|consen  334 ------K----------------KSVMQYEGH----VNLS--------------------AYLPAHVKEEEGSIFSVGDD  367 (425)
T ss_pred             ------c----------------cceeeeecc----cccc--------------------cccccccccccceEEEccCe
Confidence                  0                113334443    0000                    01112245677788899999


Q ss_pred             CcEEEEEcCCCCcc
Q 014302          258 GTFYLWETNTWTSE  271 (427)
Q Consensus       258 g~v~iwd~~~~~~~  271 (427)
                      ...|||.++.+...
T Consensus       368 cytRiWsl~~ghLl  381 (425)
T KOG2695|consen  368 CYTRIWSLDSGHLL  381 (425)
T ss_pred             eEEEEEecccCcee
Confidence            99999999988763

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.05  E-value=8.8e-06  Score=77.11  Aligned_cols=210  Identities=15%  Similarity=0.158  Sum_probs=126.1

Q ss_pred             ceeeeEEcCCC--CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-----CeEEEEecc
Q 014302          101 DLQGVSWHQHK--HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g--~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-----~~i~iw~~~  173 (427)
                      -+.|+++.-+.  ..+++|..+|.|-+-.+............++...+++++|++-...+||+|-+     ..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            46777776544  48899999999998766555333344556788899999999987789998843     558899997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                               ++                     +    ..+-....|+. +           ...+..+++|-.+.+.+.+
T Consensus       138 ---------s~---------------------l----tvPke~~~fs~-~-----------~l~gqns~cwlrd~klvla  171 (783)
T KOG1008|consen  138 ---------SL---------------------L----TVPKESPLFSS-S-----------TLDGQNSVCWLRDTKLVLA  171 (783)
T ss_pred             ---------cc---------------------c----CCCcccccccc-c-----------cccCccccccccCcchhhc
Confidence                     11                     0    01111111111 0           1234458888888888889


Q ss_pred             EecCCcEEEEEcCCCCccccccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302          254 AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       254 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      |...+.+.++|++........-.+..+..+...| .+.|++. .. ++.+-+|+...+   ++.-...+.-.+.   ...
T Consensus       172 Gm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs-~~-dg~iAiwD~~rn---ienpl~~i~~~~N---~~~  243 (783)
T KOG1008|consen  172 GMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCS-NS-DGDIAIWDTYRN---IENPLQIILRNEN---KKP  243 (783)
T ss_pred             ccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceec-cc-cCceeeccchhh---hccHHHHHhhCCC---Ccc
Confidence            9999999999998443322222344566677777 6677654 33 445555552111   1111000000000   001


Q ss_pred             CceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEecc
Q 014302          333 QGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       333 ~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ..+..++|+|... .|+++...+     ++|+++|+..
T Consensus       244 ~~l~~~aycPtrtglla~l~RdS-----~tIrlydi~~  276 (783)
T KOG1008|consen  244 KQLFALAYCPTRTGLLAVLSRDS-----ITIRLYDICV  276 (783)
T ss_pred             cceeeEEeccCCcchhhhhccCc-----ceEEEecccc
Confidence            1578999998654 455543343     6799999854

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.04  E-value=0.00012  Score=71.19  Aligned_cols=72  Identities=19%  Similarity=0.338  Sum_probs=52.6

Q ss_pred             CceeeeEEcCCC------------CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC---C-CceEEEec
Q 014302          100 VDLQGVSWHQHK------------HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN---G-GRSLSVGC  163 (427)
Q Consensus       100 ~~V~~l~~sp~g------------~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~---~-~~~la~g~  163 (427)
                      ..|+.+.|.|-.            -+||++.-.|.|.|||+...  ........|.+++.++.|-|.   + ..++|..+
T Consensus        56 s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~--s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~  133 (1062)
T KOG1912|consen   56 SAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA--SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHG  133 (1062)
T ss_pred             cceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh--hhhhhhcCCCcchhheeeeeccCcchheeEEecC
Confidence            368888887632            26778888899999999877  344455667888999999863   3 23555566


Q ss_pred             CCeEEEEecc
Q 014302          164 KGGICIWAPS  173 (427)
Q Consensus       164 ~~~i~iw~~~  173 (427)
                      -.++.+|+.+
T Consensus       134 ss~lvLwntd  143 (1062)
T KOG1912|consen  134 SSTLVLWNTD  143 (1062)
T ss_pred             CcEEEEEEcc
Confidence            6889999876

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=8.5e-05  Score=72.42  Aligned_cols=140  Identities=16%  Similarity=0.204  Sum_probs=87.9

Q ss_pred             CCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCC-----CCEEEEEEcCCceeeeeeeCCCCCCcccccccc
Q 014302          247 TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPE-----GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  321 (427)
Q Consensus       247 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spd-----g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  321 (427)
                      +|.++++|+.||+|.|-.+-+.+.........++.+++++||     .+.+++|+..+  +   .+..+.  +-+...+ 
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag--l---vL~er~--wlgnk~~-  153 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG--L---VLSERN--WLGNKDS-  153 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce--E---EEehhh--hhcCccc-
Confidence            699999999999999998888777666677889999999998     34555554332  1   122210  0000000 


Q ss_pred             ccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCC
Q 014302          322 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQ  401 (427)
Q Consensus       322 ~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  401 (427)
                          .......|+|.++.|.  |.++|-+   ++++    |+|||+.....+...+-.. ..+.....+..+.|.+    
T Consensus       154 ----v~l~~~eG~I~~i~W~--g~lIAWa---nd~G----v~vyd~~~~~~l~~i~~p~-~~~R~e~fpphl~W~~----  215 (846)
T KOG2066|consen  154 ----VVLSEGEGPIHSIKWR--GNLIAWA---NDDG----VKVYDTPTRQRLTNIPPPS-QSVRPELFPPHLHWQD----  215 (846)
T ss_pred             ----eeeecCccceEEEEec--CcEEEEe---cCCC----cEEEeccccceeeccCCCC-CCCCcccCCCceEecC----
Confidence                1122345689999996  6788884   3332    9999999888764432211 1122222344455554    


Q ss_pred             CceeEEEeeCc
Q 014302          402 GPLLSVCWSSG  412 (427)
Q Consensus       402 g~~l~v~~~~g  412 (427)
                      ...|.+||.|.
T Consensus       216 ~~~LVIGW~d~  226 (846)
T KOG2066|consen  216 EDRLVIGWGDS  226 (846)
T ss_pred             CCeEEEecCCe
Confidence            45799999875

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.04  E-value=0.00077  Score=63.14  Aligned_cols=236  Identities=18%  Similarity=0.266  Sum_probs=116.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeecc-C-------C---------cCCeeEEEEccCCCceEEEec
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-D-------S---------QRDVKVLEWRPNGGRSLSVGC  163 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~-~-------~---------~~~v~~l~~sp~~~~~la~g~  163 (427)
                      .+....|||+|++||... ++.|.+++...+  ....+.. +       -         -+.-..+-||||+++++....
T Consensus        44 ~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~--~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   44 KLQDAKWSPDGKYIAFVR-DNNLYLRDLATG--QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             TBSEEEE-SSSTEEEEEE-TTEEEEESSTTS--EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccceeecCCCeeEEEe-cCceEEEECCCC--CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            577889999999999985 578888776554  2222222 1       0         123367889999966555554


Q ss_pred             C-CeEEEEecc---CCCC--cc-----ccccCccccccc---ccCCCCcceeEeehh--cccCCCceeeeEeCCCCC-Cc
Q 014302          164 K-GGICIWAPS---YPGN--AA-----SVRSGAASFLGA---LSRGPGTRWTLVDFL--RSQNGEQITALSWGPDGR-FP  226 (427)
Q Consensus       164 ~-~~i~iw~~~---~~~~--~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~v~~~~~spdg~-~l  226 (427)
                      + ..|..+.+.   .+..  +.     -.+.|.......   ....++. ...+...  .......+..+.|.++++ +.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~-~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~  199 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGK-TTELDPPNSLNPQDYYLTRVGWSPDGKRLW  199 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTC-CCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCc-EEEeeeccccCCCccCcccceecCCCcEEE
Confidence            4 444433322   1110  00     011121110000   0111111 0011111  011245577899999988 31


Q ss_pred             c------------------cC--ce-EEe-cc---CCeEEEEEc-cCCCEEE-EEecCCcEEEE--EcCCCCccccccCC
Q 014302          227 G------------------LG--TP-IRR-GF---GGLSILKWS-PTGDYFF-AAKFDGTFYLW--ETNTWTSEPWSSTS  277 (427)
Q Consensus       227 ~------------------~~--~~-~~~-~~---~~v~~~~~s-p~g~~l~-~~~~dg~v~iw--d~~~~~~~~~~~~~  277 (427)
                      .                  ++  .. ... ..   .......|. +++..++ ....+|.-+||  +...+....+....
T Consensus       200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~  279 (353)
T PF00930_consen  200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD  279 (353)
T ss_dssp             EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS
T ss_pred             EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc
Confidence            1                  11  00 111 11   112244444 6666555 66678875555  44444444555566


Q ss_pred             CCeeE-EEECCCCCEEEEEEcCCc----eeeeeeeC-CCCCCccccccccccccceeeccCCce-eEEEECCCCCEEEEE
Q 014302          278 GFVTG-ATWDPEGRMILLAFAGSL----TLGSIHFA-SKPPSLDAHLLPVDLPDIVSLTGSQGI-EKIAWDASGERLAVS  350 (427)
Q Consensus       278 ~~v~~-v~~spdg~~l~~~~~~~~----~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~v~~sp~g~~La~~  350 (427)
                      ..|.. +.|+++++.|++.+..+.    .++.+++. ...              ...+...... ..+.|||+|++++..
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~--------------~~~LT~~~~~~~~~~~Spdg~y~v~~  345 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE--------------PKCLTCEDGDHYSASFSPDGKYYVDT  345 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE--------------EEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC--------------eEeccCCCCCceEEEECCCCCEEEEE
Confidence            66744 778999998887776532    56666665 321              1112211122 589999999999987


Q ss_pred             EecC
Q 014302          351 YKGG  354 (427)
Q Consensus       351 ~~~~  354 (427)
                      +.+.
T Consensus       346 ~s~~  349 (353)
T PF00930_consen  346 YSGP  349 (353)
T ss_dssp             EESS
T ss_pred             EcCC
Confidence            6553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.00  E-value=1.8e-05  Score=76.07  Aligned_cols=199  Identities=13%  Similarity=0.189  Sum_probs=127.2

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC--ceEEEecCCeEEEEeccCCCC
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVGCKGGICIWAPSYPGN  177 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g~~~~i~iw~~~~~~~  177 (427)
                      ..+.++..+|.|+-+|.++.-|.. +-|++.....+..+.+--.-.|-.+.|+|...  ..+++.+...-.+|++.++.+
T Consensus        25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~  103 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS  103 (1081)
T ss_pred             CcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence            367889999999999888776655 56777765555555554455688889998643  345555555566898862111


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EEEEEec
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YFFAAKF  256 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~  256 (427)
                                             ..+.           -              .+.+|..+++.+.|+|... .+++++.
T Consensus       104 -----------------------~aIe-----------f--------------~lhghsraitd~n~~~q~pdVlatcsv  135 (1081)
T KOG0309|consen  104 -----------------------NAIE-----------F--------------VLHGHSRAITDINFNPQHPDVLATCSV  135 (1081)
T ss_pred             -----------------------cceE-----------E--------------EEecCccceeccccCCCCCcceeeccc
Confidence                                   0111           0              2334677888999988776 5569999


Q ss_pred             CCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC---CCccccccccccccceeecc
Q 014302          257 DGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP---PSLDAHLLPVDLPDIVSLTG  331 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  331 (427)
                      |-.|..||+++.....+.  .-......|+|+--...++. ++.+..+.+|+.....   ..+++|..            
T Consensus       136 dt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs------------  202 (1081)
T KOG0309|consen  136 DTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVS------------  202 (1081)
T ss_pred             cccceeeeccCCCcceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccce------------
Confidence            999999999987763322  44456678999875544443 3555577888776542   23344433            


Q ss_pred             CCceeEEEECCC-CCEEEEEEecCCCcceeEEEEEEec
Q 014302          332 SQGIEKIAWDAS-GERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       332 ~~~i~~v~~sp~-g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                        .|+.++|..- ...+.+   .+.|   |+|+.||..
T Consensus       203 --~vn~~~fnr~~~s~~~s---~~~d---~tvkfw~y~  232 (1081)
T KOG0309|consen  203 --SVNSIDFNRFKYSEIMS---SSND---GTVKFWDYS  232 (1081)
T ss_pred             --eeehHHHhhhhhhhhcc---cCCC---Cceeeeccc
Confidence              5566666532 223333   3344   779999874

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.0036  Score=62.02  Aligned_cols=202  Identities=13%  Similarity=0.148  Sum_probs=113.3

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCC-eeEEEEccCCCc-eEEEecC-C----eEEEEeccCCCCc
Q 014302          106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRD-VKVLEWRPNGGR-SLSVGCK-G----GICIWAPSYPGNA  178 (427)
Q Consensus       106 ~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~-v~~l~~sp~~~~-~la~g~~-~----~i~iw~~~~~~~~  178 (427)
                      +|++.+..+|.|+.+|.|.+  ++..- ....-...+... |..+ |.-++.. +++.|.+ .    .++||+++.-.  
T Consensus        30 c~~s~~~~vvigt~~G~V~~--Ln~s~-~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~--  103 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVI--LNSSF-QLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD--  103 (933)
T ss_pred             EEcCCCceEEEeeccccEEE--ecccc-eeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccC--
Confidence            47888999999999999866  44441 121222334444 4443 4444434 4555544 3    47899998210  


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                                       ++....++...+      +..+             ..+....++.+++.|.+-+.+|+|-.+|
T Consensus       104 -----------------~n~sP~c~~~~r------i~~~-------------~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG  147 (933)
T KOG2114|consen  104 -----------------KNNSPQCLYEHR------IFTI-------------KNPTNPSPASSLAVSEDLKTIVCGFTNG  147 (933)
T ss_pred             -----------------CCCCcceeeeee------eecc-------------CCCCCCCcceEEEEEccccEEEEEecCc
Confidence                             000001110000      0000             0111234678899999989999999999


Q ss_pred             cEEEEEcCCC--Cc--ccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceee-ccC
Q 014302          259 TFYLWETNTW--TS--EPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGS  332 (427)
Q Consensus       259 ~v~iwd~~~~--~~--~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  332 (427)
                      .|..+.-.-.  +.  ... .....+|+.+++..+++.++++.... .+..+.+..+.+.            ...+ .++
T Consensus       148 ~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~-~V~~y~l~gr~p~------------~~~ld~~G  214 (933)
T KOG2114|consen  148 LVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE-QVMLYSLSGRTPS------------LKVLDNNG  214 (933)
T ss_pred             EEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc-eeEEEEecCCCcc------------eeeeccCC
Confidence            9999853211  11  111 25678999999999998844443333 3444444443211            1111 233


Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ..+++.++++....++++  +++     .|.+|+...
T Consensus       215 ~~lnCss~~~~t~qfIca--~~e-----~l~fY~sd~  244 (933)
T KOG2114|consen  215 ISLNCSSFSDGTYQFICA--GSE-----FLYFYDSDG  244 (933)
T ss_pred             ccceeeecCCCCccEEEe--cCc-----eEEEEcCCC
Confidence            477888888655545553  554     399999864

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.95  E-value=1.9e-05  Score=73.46  Aligned_cols=179  Identities=15%  Similarity=0.137  Sum_probs=108.7

Q ss_pred             eeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceee
Q 014302          137 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITA  216 (427)
Q Consensus       137 ~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  216 (427)
                      ..+.+|+..|+.++--.+.+.++..+.|++|++|.+...+.                                 ......
T Consensus       729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD---------------------------------~~~tsa  775 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD---------------------------------EIGTSA  775 (1034)
T ss_pred             ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC---------------------------------ccccce
Confidence            34457888888887766665677777889999999971111                                 000111


Q ss_pred             eEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc---cccCCCCeeEEEECC--CCCE
Q 014302          217 LSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDP--EGRM  291 (427)
Q Consensus       217 ~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~v~~sp--dg~~  291 (427)
                      ..|           .+..|..+|.++.|-.+.++++++  ||.|.+||.--+....   .....+.+..+.--+  +...
T Consensus       776 CQf-----------TY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~i  842 (1034)
T KOG4190|consen  776 CQF-----------TYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHI  842 (1034)
T ss_pred             eee-----------EhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchh
Confidence            122           344577888889888888888754  8999999976665422   122223333333333  3444


Q ss_pred             EEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          292 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       292 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      ++.+++...++++++.....  +..+......     ....+-+.+++.-+.|++||+.   -..   |+|.+.|.+++.
T Consensus       843 liAgcsaeSTVKl~DaRsce--~~~E~kVcna-----~~Pna~~R~iaVa~~GN~lAa~---LSn---Gci~~LDaR~G~  909 (1034)
T KOG4190|consen  843 LIAGCSAESTVKLFDARSCE--WTCELKVCNA-----PGPNALTRAIAVADKGNKLAAA---LSN---GCIAILDARNGK  909 (1034)
T ss_pred             eeeeccchhhheeeeccccc--ceeeEEeccC-----CCCchheeEEEeccCcchhhHH---hcC---CcEEEEecCCCc
Confidence            55555666677766655431  1111110000     0011257899999999999984   222   779999999988


Q ss_pred             eEE
Q 014302          372 LIS  374 (427)
Q Consensus       372 ~~~  374 (427)
                      ++.
T Consensus       910 vIN  912 (1034)
T KOG4190|consen  910 VIN  912 (1034)
T ss_pred             eec
Confidence            664

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.001  Score=60.04  Aligned_cols=71  Identities=10%  Similarity=0.168  Sum_probs=59.2

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccC
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~  174 (427)
                      .|+.++|||..+ +|..++.+.+|+|.|+.+.  .....+..+ ..+++++|.-|..+++.+|.. |.|.|||+..
T Consensus       195 ~IrdlafSp~~~GLl~~asl~nkiki~dlet~--~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  195 FIRDLAFSPFNEGLLGLASLGNKIKIMDLETS--CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             hhhhhccCccccceeeeeccCceEEEEecccc--eeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            899999999988 7888999999999999887  333444445 789999999998888888866 8899999983

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.94  E-value=0.0069  Score=56.75  Aligned_cols=261  Identities=18%  Similarity=0.251  Sum_probs=129.9

Q ss_pred             cCCCCEEEEE---------eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          108 HQHKHIVAFI---------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       108 sp~g~~lat~---------~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      |||+++++..         +..+.+.|||+++.  ....+... ...+....|||+| +.++...++.|.+++.. .+..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~--~~~~l~~~-~~~~~~~~~sP~g-~~~~~v~~~nly~~~~~-~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG--EITPLTPP-PPKLQDAKWSPDG-KYIAFVRDNNLYLRDLA-TGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT--EEEESS-E-ETTBSEEEE-SSS-TEEEEEETTEEEEESST-TSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCC--ceEECcCC-ccccccceeecCC-CeeEEEecCceEEEECC-CCCe
Confidence            6889877774         33467788888876  23222222 5678999999999 67777777888888765 1111


Q ss_pred             cccccCcccccccccCCCCcceeE--ee-hhcccCCCceeeeEeCCCCCCcc----------------------------
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTL--VD-FLRSQNGEQITALSWGPDGRFPG----------------------------  227 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~v~~~~~spdg~~l~----------------------------  227 (427)
                      .           .++.++...+..  .. ..+......-..+-|||||+.++                            
T Consensus        76 ~-----------~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~  144 (353)
T PF00930_consen   76 T-----------QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVE  144 (353)
T ss_dssp             E-----------ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEE
T ss_pred             E-----------EeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccc
Confidence            1           111111100000  00 00100022235788889888732                            


Q ss_pred             ----------------------cCce--EEe------ccCCeEEEEEccCCCEEE--EEecCC---cEEEEEcCCCCccc
Q 014302          228 ----------------------LGTP--IRR------GFGGLSILKWSPTGDYFF--AAKFDG---TFYLWETNTWTSEP  272 (427)
Q Consensus       228 ----------------------~~~~--~~~------~~~~v~~~~~sp~g~~l~--~~~~dg---~v~iwd~~~~~~~~  272 (427)
                                            .+..  +..      ...-+..+.|+++++.|+  ....+.   .+.++|..++.+..
T Consensus       145 ~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~  224 (353)
T PF00930_consen  145 SIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRV  224 (353)
T ss_dssp             EEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEE
T ss_pred             ccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeE
Confidence                                  1110  110      112356788999998444  334333   26677887766532


Q ss_pred             cc--cCCCCe---eEEEEC-CCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeec-cCCcee-EEEECC
Q 014302          273 WS--STSGFV---TGATWD-PEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIE-KIAWDA  342 (427)
Q Consensus       273 ~~--~~~~~v---~~v~~s-pdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~-~v~~sp  342 (427)
                      ..  ...+.|   ..+.|. +++..++..+..++  .|+.++.....              ...+. +.-.|. -+.|++
T Consensus       225 ~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~--------------~~~lT~G~~~V~~i~~~d~  290 (353)
T PF00930_consen  225 VLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK--------------PRQLTSGDWEVTSILGWDE  290 (353)
T ss_dssp             EEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE--------------EEESS-SSS-EEEEEEEEC
T ss_pred             EEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc--------------eeccccCceeecccceEcC
Confidence            22  223332   255554 77777776666655  44444444331              11111 222554 478899


Q ss_pred             CCCEEEEEEecCCCcceeEEEEEEec-cCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302          343 SGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS  410 (427)
Q Consensus       343 ~g~~La~~~~~~~d~~~g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~  410 (427)
                      +++.|.......+... ..|+.-++. .+....+++..     +..   ..++|.|+   |.-+..-++
T Consensus       291 ~~~~iyf~a~~~~p~~-r~lY~v~~~~~~~~~~LT~~~-----~~~---~~~~~Spd---g~y~v~~~s  347 (353)
T PF00930_consen  291 DNNRIYFTANGDNPGE-RHLYRVSLDSGGEPKCLTCED-----GDH---YSASFSPD---GKYYVDTYS  347 (353)
T ss_dssp             TSSEEEEEESSGGTTS-BEEEEEETTETTEEEESSTTS-----STT---EEEEE-TT---SSEEEEEEE
T ss_pred             CCCEEEEEecCCCCCc-eEEEEEEeCCCCCeEeccCCC-----CCc---eEEEECCC---CCEEEEEEc
Confidence            9998876533322111 345555666 44444333211     111   36778876   444444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.94  E-value=0.00097  Score=59.30  Aligned_cols=191  Identities=15%  Similarity=0.085  Sum_probs=105.5

Q ss_pred             CCCCCCCCceeeeEEcCCCCEEEEEeC-----CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeE
Q 014302           93 HVHLLPEVDLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGI  167 (427)
Q Consensus        93 ~~~~l~~~~V~~l~~sp~g~~lat~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i  167 (427)
                      ..+-+.+|.    .||+||++|.+.-.     .|.|-|||.... ....-....|.-.--.+.|.||| ..|+++.-| |
T Consensus        48 ~gRHFyGHg----~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~-~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGG-I  120 (305)
T PF07433_consen   48 PGRHFYGHG----VFSPDGRLLYTTENDYETGRGVIGVYDAARG-YRRIGEFPSHGIGPHELLLMPDG-ETLVVANGG-I  120 (305)
T ss_pred             CCCEEecCE----EEcCCCCEEEEeccccCCCcEEEEEEECcCC-cEEEeEecCCCcChhhEEEcCCC-CEEEEEcCC-C
Confidence            334445554    48999999988733     489999999843 12333334454455668899999 455555322 2


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------------c
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------------L  228 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------------~  228 (427)
                      .-- -+.+-.+.++.+.. +++..+...++.-......-...+...+..+++.++|....                   .
T Consensus       121 ~Th-pd~GR~kLNl~tM~-psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~  198 (305)
T PF07433_consen  121 ETH-PDSGRAKLNLDTMQ-PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR  198 (305)
T ss_pred             ccC-cccCceecChhhcC-CceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC
Confidence            100 00000111121221 11222222222111222211223366788888888887521                   1


Q ss_pred             CceE----------EeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEE
Q 014302          229 GTPI----------RRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL  294 (427)
Q Consensus       229 ~~~~----------~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~  294 (427)
                      +..+          ....+-+-++++++++.+++ ++-..+.+.+||..++...... .-..+..++-.+++ ++++
T Consensus       199 g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~-~l~D~cGva~~~~~-f~~s  273 (305)
T PF07433_consen  199 GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV-PLPDACGVAPTDDG-FLVS  273 (305)
T ss_pred             CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc-ccCceeeeeecCCc-eEEe
Confidence            1111          11335688999999999887 6667888999999988864443 23345666666666 5554

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.94  E-value=0.00027  Score=67.06  Aligned_cols=68  Identities=13%  Similarity=0.297  Sum_probs=55.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~  173 (427)
                      .|.+++++|+.+.|+.|..||+|.+||....   .... ....-..+.++|+|+| .++++|++ |.+.+||+.
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~---~t~~-~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRG---VTLL-AKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCC---eeee-eeecccceEEEEcCCC-cEEEEEcCCceEEEEEee
Confidence            7899999999999999999999999998766   2111 1334457899999999 66666665 999999997

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.93  E-value=0.0003  Score=59.76  Aligned_cols=71  Identities=11%  Similarity=0.158  Sum_probs=53.9

Q ss_pred             CeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCcc--ccccCCCCeeEEEECCC-CCEEEEEEcCCceeeeeeeCC
Q 014302          238 GLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~v~~spd-g~~l~~~~~~~~~i~~~~~~~  309 (427)
                      .|.+++-+|..+.++ +|+.||.+-+||++.....  .+..|+..+..+-|+|. +..|++ ++++|.++.|+-..
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft-~sedGslw~wdas~  255 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT-CSEDGSLWHWDAST  255 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE-ecCCCcEEEEcCCC
Confidence            478888888776655 8999999999999988542  33489999999999994 556665 46666777666554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.001  Score=65.26  Aligned_cols=142  Identities=18%  Similarity=0.320  Sum_probs=88.0

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC----CCceEEEecCCeEEEEeccCCCCccccccC
Q 014302          109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN----GGRSLSVGCKGGICIWAPSYPGNAASVRSG  184 (427)
Q Consensus       109 p~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~----~~~~la~g~~~~i~iw~~~~~~~~~~~~~~  184 (427)
                      -+|.++|+++.||+|.|-.+.+.  +.. .......++.+++++|+    ..+.+++|+..++.++.-+-          
T Consensus        81 ~~Gey~asCS~DGkv~I~sl~~~--~~~-~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~w----------  147 (846)
T KOG2066|consen   81 LEGEYVASCSDDGKVVIGSLFTD--DEI-TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNW----------  147 (846)
T ss_pred             cCCceEEEecCCCcEEEeeccCC--ccc-eeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhh----------
Confidence            35899999999999999776665  222 22345568999999998    22456666664466654330          


Q ss_pred             cccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 014302          185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE  264 (427)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd  264 (427)
                                           +..  ...|                ......++|.+++|  .|.++|-++ |-.|++||
T Consensus       148 ---------------------lgn--k~~v----------------~l~~~eG~I~~i~W--~g~lIAWan-d~Gv~vyd  185 (846)
T KOG2066|consen  148 ---------------------LGN--KDSV----------------VLSEGEGPIHSIKW--RGNLIAWAN-DDGVKVYD  185 (846)
T ss_pred             ---------------------hcC--ccce----------------eeecCccceEEEEe--cCcEEEEec-CCCcEEEe
Confidence                                 110  1110                12234678888988  477888776 45589999


Q ss_pred             cCCCCccccc-------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302          265 TNTWTSEPWS-------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  308 (427)
Q Consensus       265 ~~~~~~~~~~-------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~  308 (427)
                      +.+.+.....       -....-..+.|.++.+. +.|-++  ++++..+.
T Consensus       186 ~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~L-VIGW~d--~v~i~~I~  233 (846)
T KOG2066|consen  186 TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRL-VIGWGD--SVKICSIK  233 (846)
T ss_pred             ccccceeeccCCCCCCCCcccCCCceEecCCCeE-EEecCC--eEEEEEEe
Confidence            9887763332       12233457889886654 445444  45555554

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=97.92  E-value=2.7e-05  Score=46.74  Aligned_cols=37  Identities=19%  Similarity=0.443  Sum_probs=30.1

Q ss_pred             ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEe
Q 014302          135 ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (427)
Q Consensus       135 ~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~  171 (427)
                      ......+|...|++++|+|++..+++++.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4456678999999999999985555556679999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.90  E-value=6.2e-05  Score=65.32  Aligned_cols=164  Identities=10%  Similarity=0.207  Sum_probs=100.9

Q ss_pred             ceeeeEEcCCCC--EEEEEeCCCeEEEEEccCCC-----------------C-----------------------cceee
Q 014302          101 DLQGVSWHQHKH--IVAFISGSTQVIVRDYEDSG-----------------K-----------------------DACIL  138 (427)
Q Consensus       101 ~V~~l~~sp~g~--~lat~~~d~~v~vwd~~~~~-----------------~-----------------------~~~~~  138 (427)
                      .|..+.|-.++.  .++..+.|.+|++|.+....                 .                       .+...
T Consensus        87 Kin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rv  166 (460)
T COG5170          87 KINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRV  166 (460)
T ss_pred             HhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecccee
Confidence            678888876654  55566689999999875430                 0                       00111


Q ss_pred             c-cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee
Q 014302          139 T-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (427)
Q Consensus       139 ~-~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (427)
                      + ..|.--+.+++|+.|. ..+.++.+=.|.+|+++.+..                     .+..++ ++.+        
T Consensus       167 yaNaH~yhiNSiS~NsD~-et~lSaDdLrINLWnl~i~D~---------------------sFnIVD-iKP~--------  215 (460)
T COG5170         167 YANAHPYHINSISFNSDK-ETLLSADDLRINLWNLEIIDG---------------------SFNIVD-IKPH--------  215 (460)
T ss_pred             ccccceeEeeeeeecCch-heeeeccceeeeeccccccCC---------------------ceEEEe-ccCc--------
Confidence            1 3466678899999887 667777777788999872211                     111111 1111        


Q ss_pred             EeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCC-----cccc------------ccCCCC
Q 014302          218 SWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWT-----SEPW------------SSTSGF  279 (427)
Q Consensus       218 ~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~-----~~~~------------~~~~~~  279 (427)
                                   .+.....-|++..|+|..-.++ .++..|.|++-|++...     +..+            ......
T Consensus       216 -------------nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsS  282 (460)
T COG5170         216 -------------NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSS  282 (460)
T ss_pred             -------------cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhh
Confidence                         0000112466777888665444 66678999999998432     1111            133467


Q ss_pred             eeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          280 VTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       280 v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      |..+.|+++|+++++  .+-.++.+|++...
T Consensus       283 ISD~kFs~ngryIls--RdyltvkiwDvnm~  311 (460)
T COG5170         283 ISDFKFSDNGRYILS--RDYLTVKIWDVNMA  311 (460)
T ss_pred             hcceEEcCCCcEEEE--eccceEEEEecccc
Confidence            889999999999974  44446777776653

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=97.86  E-value=7.7e-05  Score=71.96  Aligned_cols=145  Identities=14%  Similarity=0.184  Sum_probs=99.0

Q ss_pred             CCCC--ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302           97 LPEV--DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      +.+|  .|+.+.|+|+.. .||+++.|..+..||+..... +......-......++|+-....++|+...+.|.+||..
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r  188 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR  188 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCCCc-ceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence            3444  899999999886 899999999999999988733 333333344567889999777789998888889999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC-CCEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT-GDYFF  252 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~-g~~l~  252 (427)
                      .++.                        +...+                          ++|...+..+.|..- -..+.
T Consensus       189 ~gs~------------------------pl~s~--------------------------K~~vs~vn~~~fnr~~~s~~~  218 (1081)
T KOG0309|consen  189 KGST------------------------PLCSL--------------------------KGHVSSVNSIDFNRFKYSEIM  218 (1081)
T ss_pred             CCCc------------------------ceEEe--------------------------cccceeeehHHHhhhhhhhhc
Confidence            3221                        11112                          223334445554432 23455


Q ss_pred             EEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEE
Q 014302          253 AAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMI  292 (427)
Q Consensus       253 ~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l  292 (427)
                      +++.|++|+.||......  ........++...++-|-|.-.
T Consensus       219 s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~  260 (1081)
T KOG0309|consen  219 SSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY  260 (1081)
T ss_pred             ccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence            778899999999875543  3344667778888888865543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=97.84  E-value=0.0012  Score=57.12  Aligned_cols=198  Identities=12%  Similarity=0.110  Sum_probs=119.8

Q ss_pred             ceeeeEEcC---CCC-EEEEEeCCCeEEEEEccCCCCcceeeccC------CcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302          101 DLQGVSWHQ---HKH-IVAFISGSTQVIVRDYEDSGKDACILTSD------SQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (427)
Q Consensus       101 ~V~~l~~sp---~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~------~~~~v~~l~~sp~~~~~la~g~~~~i~iw  170 (427)
                      .+..|.|+-   +|. .|+-+..+|.|.++..+..  .......+      ......++.|++-+..++++-+++.+.+-
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~--~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED--ESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccc--eeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            566777753   444 6677778899999876554  11111111      11124578899888666555566777733


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-  249 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-  249 (427)
                      +..                       .....                          +.+..+.|.-..+..+|+-... 
T Consensus       149 ~~t-----------------------~~~le--------------------------~vq~wk~He~E~Wta~f~~~~pn  179 (339)
T KOG0280|consen  149 YET-----------------------EMVLE--------------------------KVQTWKVHEFEAWTAKFSDKEPN  179 (339)
T ss_pred             ecc-----------------------eeeee--------------------------ecccccccceeeeeeecccCCCc
Confidence            332                       00001                          1223455667788888875554 


Q ss_pred             EEEEEecCCcEEEEEcCCCCcccc---ccCCCCeeEEEECCC-CCEEEEEEcCCceeeeeeeCCC-CCCccccccccccc
Q 014302          250 YFFAAKFDGTFYLWETNTWTSEPW---SSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFASK-PPSLDAHLLPVDLP  324 (427)
Q Consensus       250 ~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~v~~spd-g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~  324 (427)
                      .+++|+.|+.+.-||+|..+.-.+   ..|...|.++.=+|. +.++++|+-++ .|..|+..+. ++.++         
T Consensus       180 lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRnm~kPl~~---------  249 (339)
T KOG0280|consen  180 LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRNMGKPLFK---------  249 (339)
T ss_pred             eEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc-ceeeeehhcccCcccc---------
Confidence            555999999999999995443222   267888888888764 56777665555 7777777653 11111         


Q ss_pred             cceeeccCCceeEEEECCCC--CEEEEEEecCCCcceeEEEEEEeccC
Q 014302          325 DIVSLTGSQGIEKIAWDASG--ERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       325 ~~~~~~~~~~i~~v~~sp~g--~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                          ...++.|+.+.++|.-  +.|++|...+       .+|-+++.+
T Consensus       250 ----~~v~GGVWRi~~~p~~~~~lL~~CMh~G-------~ki~~~~~~  286 (339)
T KOG0280|consen  250 ----AKVGGGVWRIKHHPEIFHRLLAACMHNG-------AKILDSSDK  286 (339)
T ss_pred             ----CccccceEEEEecchhhhHHHHHHHhcC-------ceEEEeccc
Confidence                1223689999999854  3455543333       566666543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=7.2e-05  Score=69.75  Aligned_cols=159  Identities=13%  Similarity=0.262  Sum_probs=99.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-----ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-----ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~  175 (427)
                      .|++++--.+.+-+++++.|++|++|.+...+..     ..-.+..|.++|.++.|-.+- +. .+++|+++++||-- -
T Consensus       737 ~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~-i~ScD~giHlWDPF-i  813 (1034)
T KOG4190|consen  737 KIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RS-IASCDGGIHLWDPF-I  813 (1034)
T ss_pred             HhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ce-eeeccCcceeeccc-c
Confidence            5666665566778889999999999999775222     334556799999999999775 34 44678899999964 1


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EE
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AA  254 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~  254 (427)
                      +.                        +           ...+.|.|..          ...+.|.++. +-+...+. .+
T Consensus       814 gr------------------------~-----------Laq~~dapk~----------~a~~~ikcl~-nv~~~iliAgc  847 (1034)
T KOG4190|consen  814 GR------------------------L-----------LAQMEDAPKE----------GAGGNIKCLE-NVDRHILIAGC  847 (1034)
T ss_pred             cc------------------------h-----------hHhhhcCccc----------CCCceeEecc-cCcchheeeec
Confidence            00                        0           0111121100          0011122221 11333344 44


Q ss_pred             ecCCcEEEEEcCCCCc--cc-c---ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          255 KFDGTFYLWETNTWTS--EP-W---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~--~~-~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      +...+|+++|.++.+-  +. .   ......+.+++..+.|+.++.+-+++ .+.+.+..+
T Consensus       848 saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnG-ci~~LDaR~  907 (1034)
T KOG4190|consen  848 SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNG-CIAILDARN  907 (1034)
T ss_pred             cchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCC-cEEEEecCC
Confidence            7789999999987653  11 1   14556788999999999998776655 555555444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.79  E-value=0.0048  Score=63.45  Aligned_cols=121  Identities=17%  Similarity=0.261  Sum_probs=70.1

Q ss_pred             CeeEEEECCCCCEEEEEEcCCcee-eeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCc
Q 014302          279 FVTGATWDPEGRMILLAFAGSLTL-GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI  357 (427)
Q Consensus       279 ~v~~v~~spdg~~l~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~  357 (427)
                      .-.+++|--||+++++..-....- +.+.+|+....+.....+..          +--.+++|-|.|.++|+.....+| 
T Consensus       197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~----------~l~~~LsWkPsgs~iA~iq~~~sd-  265 (1265)
T KOG1920|consen  197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVE----------GLQHSLSWKPSGSLIAAIQCKTSD-  265 (1265)
T ss_pred             CCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCccc----------ccccceeecCCCCeEeeeeecCCC-
Confidence            345699999999998754332222 55566665322222222111          123688999999999997766666 


Q ss_pred             ceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe---eCceEEEEec
Q 014302          358 YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW---SSGFCCTYPL  419 (427)
Q Consensus       358 ~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~---~~g~i~~~~~  419 (427)
                        +.|.+|.-+....-..    .+.-+.+......++|..+   +.+||+..   ....|++|++
T Consensus       266 --~~IvffErNGL~hg~f----~l~~p~de~~ve~L~Wns~---sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  266 --SDIVFFERNGLRHGEF----VLPFPLDEKEVEELAWNSN---SDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             --CcEEEEecCCcccccc----ccCCcccccchheeeecCC---CCceeeeecccccceEEEEEe
Confidence              5688887643221100    0001222222456778765   77999943   4445888874

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.64  E-value=0.00063  Score=66.95  Aligned_cols=70  Identities=14%  Similarity=0.310  Sum_probs=60.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~  173 (427)
                      .+++++|||..-.||.|-.-|.+.+|..++.  +.......|..+|..+.|||+| ..+.++.. +.+.+|..+
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--ETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCc--eeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEee
Confidence            5788999999999999999999999987665  4555556799999999999999 67777777 999999987

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=97.61  E-value=0.00048  Score=73.11  Aligned_cols=165  Identities=16%  Similarity=0.257  Sum_probs=110.5

Q ss_pred             CcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC
Q 014302          142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (427)
Q Consensus       142 ~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (427)
                      +-..|.++.=+|....+|..+.++.+++|....                                    ..+|.+..-  
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~------------------------------------~~~v~~~rt-- 2248 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH------------------------------------GQQVVCFRT-- 2248 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccC------------------------------------CCeEEEeec--
Confidence            456788888888887788888889999998861                                    111211110  


Q ss_pred             CCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302          222 DGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT  301 (427)
Q Consensus       222 dg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~  301 (427)
                                  .....++.+.|+.+|..+..+..||.+-+|.+...-...+..|......+.|-.  ..+++++... .
T Consensus      2249 ------------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~-d 2313 (2439)
T KOG1064|consen 2249 ------------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIG--SLLATAGRSS-D 2313 (2439)
T ss_pred             ------------cCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeee--hhhhccccCC-C
Confidence                        012457778899999999999999999999987333355557888888888875  5555543221 2


Q ss_pred             eeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          302 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       302 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      -+.+.+|+....-  .      .......|.+.++.+++-|.-+.|++   |+.+   |.|+|||++..++.
T Consensus      2314 ~~n~~lwDtl~~~--~------~s~v~~~H~~gaT~l~~~P~~qllis---ggr~---G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2314 NRNVCLWDTLLPP--M------NSLVHTCHDGGATVLAYAPKHQLLIS---GGRK---GEVCLFDIRQRQLR 2371 (2439)
T ss_pred             CCcccchhcccCc--c------cceeeeecCCCceEEEEcCcceEEEe---cCCc---CcEEEeehHHHHHH
Confidence            2334444431100  0      00111345668999999999999988   7777   66999999877664

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=97.58  E-value=0.00032  Score=59.53  Aligned_cols=72  Identities=13%  Similarity=0.220  Sum_probs=58.2

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC-ceEEEecCCeEEEEecc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-~~la~g~~~~i~iw~~~  173 (427)
                      .|++++-+|..+ .+++|+.||.+-|||+... ..+..+...|+..++.+-|+|... +++.++.+|.+..||..
T Consensus       181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~-~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNV-AMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             cchhhhCCcccccEEEEecCCCeEEEEEcccc-cchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            599999999776 7778899999999999877 235556677999999999999654 56666677988888875

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.57  E-value=0.00068  Score=61.98  Aligned_cols=207  Identities=8%  Similarity=0.002  Sum_probs=123.5

Q ss_pred             CCCCEEEEEeCCCeEEEEEccC-CCCcceeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEEeccCCCCccccccCc
Q 014302          109 QHKHIVAFISGSTQVIVRDYED-SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPGNAASVRSGA  185 (427)
Q Consensus       109 p~g~~lat~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw~~~~~~~~~~~~~~~  185 (427)
                      .--+++.+++.||.++.|--.. .+.+.......|...|.+++-+-++ .++.+.+  +..++++|+.            
T Consensus        18 tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE------------   84 (558)
T KOG0882|consen   18 TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE------------   84 (558)
T ss_pred             ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee------------
Confidence            3456899999999999997554 2223333344588889999999998 6777754  4889999987            


Q ss_pred             ccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC--CEEE-EEecCCcEEE
Q 014302          186 ASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG--DYFF-AAKFDGTFYL  262 (427)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g--~~l~-~~~~dg~v~i  262 (427)
                                   ....+..++..                     -++    +.-+.-.+|..  ..|+ +.-.++.+.+
T Consensus        85 -------------n~DminmiKL~---------------------~lP----g~a~wv~skGd~~s~IAVs~~~sg~i~V  126 (558)
T KOG0882|consen   85 -------------NFDMINMIKLV---------------------DLP----GFAEWVTSKGDKISLIAVSLFKSGKIFV  126 (558)
T ss_pred             -------------ccchhhhcccc---------------------cCC----CceEEecCCCCeeeeEEeecccCCCcEE
Confidence                         11222212211                     000    11111112211  1344 3345788999


Q ss_pred             EEcCCCCcccc---ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce----eeccCCce
Q 014302          263 WETNTWTSEPW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV----SLTGSQGI  335 (427)
Q Consensus       263 wd~~~~~~~~~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i  335 (427)
                      +|-....+...   .-|..+|..+.+++-+...++.. ..|.+-.|.....-...+.. ..+.+...+    .....+..
T Consensus       127 vD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD-~~gmVEyWs~e~~~qfPr~~-l~~~~K~eTdLy~f~K~Kt~p  204 (558)
T KOG0882|consen  127 VDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID-ISGMVEYWSAEGPFQFPRTN-LNFELKHETDLYGFPKAKTEP  204 (558)
T ss_pred             ECCcCCcCccceecccccCceEEEEeeccccceeecc-ccceeEeecCCCcccCcccc-ccccccccchhhcccccccCc
Confidence            99877765332   27899999999999888877543 33344444333200000000 001111111    12234578


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS  374 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~  374 (427)
                      .++.|+|+|..++..   +.|   .+|++++.+++.+++
T Consensus       205 ts~Efsp~g~qistl---~~D---rkVR~F~~KtGklvq  237 (558)
T KOG0882|consen  205 TSFEFSPDGAQISTL---NPD---RKVRGFVFKTGKLVQ  237 (558)
T ss_pred             cceEEccccCccccc---Ccc---cEEEEEEeccchhhh
Confidence            899999999999883   466   569999999987754

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.56  E-value=0.0056  Score=59.79  Aligned_cols=171  Identities=12%  Similarity=0.134  Sum_probs=102.2

Q ss_pred             EEEEccCCCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEE---cCCceeeeeeeCCCC-----
Q 014302          241 ILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF---AGSLTLGSIHFASKP-----  311 (427)
Q Consensus       241 ~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~---~~~~~i~~~~~~~~~-----  311 (427)
                      .+-++|||+.+. +.-..+.+.+.|..+.+......-.+....+.++|+|+++++++   ..+..+..+...+..     
T Consensus       197 ~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        197 RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             ccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            344778998776 54456778888988766533333344557788999999998875   222233333221110     


Q ss_pred             -----------C---Ccc-cccccccccc--------ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          312 -----------P---SLD-AHLLPVDLPD--------IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       312 -----------~---~~~-~~~~~~~~~~--------~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                                 .   .+. .+...++...        ...+..+.....|.+||||++++++...+     .+|.|+|+.
T Consensus       277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS-----~tVSVIDv~  351 (635)
T PRK02888        277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS-----PTVTVIDVR  351 (635)
T ss_pred             chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC-----CcEEEEECh
Confidence                       0   001 1122222222        22344666889999999999999974333     459999998


Q ss_pred             cCce-E--EEeeeeeeeC-CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          369 RTPL-I--SLSLIGFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       369 ~~~~-~--~~~~~~~~~~-~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .... +  .+.+...+-+ ......|+..+|.++   |...+.-..|.+|.-|++
T Consensus       352 k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~---G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        352 KLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR---GNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             hhhhhhhccCCccceEEEeeccCCCcceEEECCC---CCEEEeEeecceeEEEeh
Confidence            7542 1  1122222222 222345888889765   667777888888888874

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.54  E-value=0.00029  Score=66.77  Aligned_cols=78  Identities=22%  Similarity=0.368  Sum_probs=60.7

Q ss_pred             eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302          327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS  406 (427)
Q Consensus       327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~  406 (427)
                      +.+...+.|.+++++|+.+.|+.   |+.|   |.|.+||...+... ..     +   ..--|..++|||+   |.++.
T Consensus       254 tsipL~s~v~~ca~sp~E~kLvl---GC~D---gSiiLyD~~~~~t~-~~-----k---a~~~P~~iaWHp~---gai~~  315 (545)
T PF11768_consen  254 TSIPLPSQVICCARSPSEDKLVL---GCED---GSIILYDTTRGVTL-LA-----K---AEFIPTLIAWHPD---GAIFV  315 (545)
T ss_pred             EEEecCCcceEEecCcccceEEE---EecC---CeEEEEEcCCCeee-ee-----e---ecccceEEEEcCC---CcEEE
Confidence            34455668999999999999999   8888   77999998765332 11     1   1123779999997   89999


Q ss_pred             EEeeCceEEEEecccc
Q 014302          407 VCWSSGFCCTYPLIFR  422 (427)
Q Consensus       407 v~~~~g~i~~~~~~~~  422 (427)
                      ||...|.+++||+-..
T Consensus       316 V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  316 VGSEQGELQCFDMALS  331 (545)
T ss_pred             EEcCCceEEEEEeecC
Confidence            9999999999997543

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.51  E-value=0.0025  Score=62.12  Aligned_cols=116  Identities=13%  Similarity=0.154  Sum_probs=79.0

Q ss_pred             ccCCCEEEEEecCCcEEEEEcCC-----CCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302          245 SPTGDYFFAAKFDGTFYLWETNT-----WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       245 sp~g~~l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      .++|++...+  ++.|.+.|.++     .+...+..-......+.++|||+++++++..+..+.++++......+++...
T Consensus       285 vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        285 VKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             hhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            4578877663  67899999987     3334445667778899999999999998888888989988875433333322


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      +-+.- ......+......+|+++|....+.|-++.      |..|++..
T Consensus       363 ~~~~v-vaevevGlGPLHTaFDg~G~aytslf~dsq------v~kwn~~~  405 (635)
T PRK02888        363 PRDAV-VAEPELGLGPLHTAFDGRGNAYTTLFLDSQ------IVKWNIEA  405 (635)
T ss_pred             ccceE-EEeeccCCCcceEEECCCCCEEEeEeecce------eEEEehHH
Confidence            11100 111222335567789999987777666654      99999876

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.44  E-value=0.078  Score=50.94  Aligned_cols=61  Identities=16%  Similarity=0.171  Sum_probs=38.6

Q ss_pred             ceeeeEEcCCCCEEEEE-eCC----CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC
Q 014302          101 DLQGVSWHQHKHIVAFI-SGS----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK  164 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d----~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~  164 (427)
                      .+..+++||+|++||.+ +..    .+++++|+.++  +...-... ......+.|.+++..++.+..+
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~  190 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDGIE-NPKFSSVSWSDDGKGFFYTRFD  190 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEEEE-EEESEEEEECTTSSEEEEEECS
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCccc-ccccceEEEeCCCCEEEEEEeC
Confidence            34467899999999876 222    46889998877  22221111 1112339999998777777644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.44  E-value=0.021  Score=56.82  Aligned_cols=164  Identities=11%  Similarity=0.053  Sum_probs=84.4

Q ss_pred             CceeeeEEcCCCCEEEEEe------CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCe-EEEEec
Q 014302          100 VDLQGVSWHQHKHIVAFIS------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG-ICIWAP  172 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~------~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~-i~iw~~  172 (427)
                      ..+.+.++||+|+.+|...      .|..-.||-...+.. ...+..+.  ..+..+|+|||..+.++...+. +++.+-
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-AVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-ceeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            3678999999999887765      355555665543322 23333333  3788999999844443332222 222221


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF  252 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~  252 (427)
                      .                      +..+...+. +               ++..     ......+.|..+.|||||+.|+
T Consensus       427 ~----------------------~~gql~~~~-v---------------d~ge-----~~~~~~g~Issl~wSpDG~RiA  463 (591)
T PRK13616        427 P----------------------ATGQLARTP-V---------------DASA-----VASRVPGPISELQLSRDGVRAA  463 (591)
T ss_pred             C----------------------CCceEEEEe-c---------------cCch-----hhhccCCCcCeEEECCCCCEEE
Confidence            1                      000111000 0               0000     0001234678888888888877


Q ss_pred             EEecCCcEEE---EEcCCCCccc-----cc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          253 AAKFDGTFYL---WETNTWTSEP-----WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       253 ~~~~dg~v~i---wd~~~~~~~~-----~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      ... ++.|++   -....+....     .. .....+.++.|..+++.++.....+..++.+.+...
T Consensus       464 ~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~  529 (591)
T PRK13616        464 MII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGS  529 (591)
T ss_pred             EEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCc
Confidence            443 466666   3322332111     11 233346889999999866443323334555555543

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.43  E-value=0.0065  Score=60.41  Aligned_cols=165  Identities=15%  Similarity=0.161  Sum_probs=88.3

Q ss_pred             CeEEEEEccCCCEEEEEe------cCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          238 GLSILKWSPTGDYFFAAK------FDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~------~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      .+...++||+|+.++...      .|.  .|++++.. +....+.. ........|+|||+.|.+........++.... 
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~-  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP-  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccC-
Confidence            567888999999988433      233  45555542 22233332 23488999999999888875443222221111 


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEE---EEeccCceEEEe-eeeeeeCCC
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAI---YDARRTPLISLS-LIGFIRGPG  385 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~v---wd~~~~~~~~~~-~~~~~~~~~  385 (427)
                      ...  .-+..+++...... ...+.|.++.|||||++||... +      +.|+|   -....+. ..+. +....  +.
T Consensus       428 ~~g--ql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~-~------g~v~Va~Vvr~~~G~-~~l~~~~~l~--~~  494 (591)
T PRK13616        428 ATG--QLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMII-G------GKVYLAVVEQTEDGQ-YALTNPREVG--PG  494 (591)
T ss_pred             CCc--eEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEE-C------CEEEEEEEEeCCCCc-eeecccEEee--cc
Confidence            111  11111222222211 2344799999999999999964 2      34777   3434444 3221 11111  11


Q ss_pred             CCCCceeEEeccCCCCCceeEEEeeCceEEEEecccc
Q 014302          386 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  422 (427)
Q Consensus       386 ~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~  422 (427)
                      ....+..++|.+.   +. |.|+..++...+|.+-..
T Consensus       495 l~~~~~~l~W~~~---~~-L~V~~~~~~~~v~~v~vD  527 (591)
T PRK13616        495 LGDTAVSLDWRTG---DS-LVVGRSDPEHPVWYVNLD  527 (591)
T ss_pred             cCCccccceEecC---CE-EEEEecCCCCceEEEecC
Confidence            1112356777764   44 447777776666654443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.02  Score=52.70  Aligned_cols=259  Identities=14%  Similarity=0.135  Sum_probs=147.4

Q ss_pred             ceeeeEEcCCCCEEEEEeC-CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC-CCceEEEecC--CeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN-GGRSLSVGCK--GGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~-~~~~la~g~~--~~i~iw~~~~~~  176 (427)
                      .|.+++.+-+|.++.+.+. |..++++|+..-.........-..+.+..+ .+|. -..++|++..  +.+.++|-..+.
T Consensus        55 ~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~  133 (558)
T KOG0882|consen   55 VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDF  133 (558)
T ss_pred             HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCc
Confidence            5778888999999999777 999999998875211111111122222221 2222 1225665543  667777654000


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                      .                        .                         .+-....|..+|..+.+.+-+..+++...
T Consensus       134 ~------------------------q-------------------------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen  134 C------------------------Q-------------------------DGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             C------------------------c-------------------------cceecccccCceEEEEeeccccceeeccc
Confidence            0                        0                         00012336778899999999999998888


Q ss_pred             CCcEEEEEcCC-CCc----cc-----------cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cc----
Q 014302          257 DGTFYLWETNT-WTS----EP-----------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SL----  314 (427)
Q Consensus       257 dg~v~iwd~~~-~~~----~~-----------~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~----  314 (427)
                      .|-|.-|.... .+.    ..           +...+....++.|+|+|..+..-. .+..++...+.....  .+    
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~-~DrkVR~F~~KtGklvqeiDE~~  243 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN-PDRKVRGFVFKTGKLVQEIDEVL  243 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC-cccEEEEEEeccchhhhhhhccc
Confidence            89999998763 111    11           114556788999999999988654 555776666655321  01    


Q ss_pred             -ccccc---ccccccce---------ee--ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee--
Q 014302          315 -DAHLL---PVDLPDIV---------SL--TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL--  377 (427)
Q Consensus       315 -~~~~~---~~~~~~~~---------~~--~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~--  377 (427)
                       ..|..   +..+....         .+  .+...-..+.|+..|++|+-   ++--    -|+|.++.++.++.+.-  
T Consensus       244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly---~t~~----gikvin~~tn~v~ri~gk~  316 (558)
T KOG0882|consen  244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY---GTIL----GIKVINLDTNTVVRILGKD  316 (558)
T ss_pred             hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe---ecce----eEEEEEeecCeEEEEeccc
Confidence             11111   11111100         01  12224567889999999976   3321    19999999988775431  


Q ss_pred             -------eeeeeCCC----------CCCCceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          378 -------IGFIRGPG----------DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       378 -------~~~~~~~~----------~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                             ....++..          ...+|+ +.|.+   +-.+++.+|...++.+|.-.+
T Consensus       317 e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~-~~~~~---dpt~~c~a~kk~rfylf~ep~  373 (558)
T KOG0882|consen  317 EAIRFTRLSLYQGAQKSNLAALEVAASNNPL-LEFQK---DPTIVCTAFKKNRFYLFREPE  373 (558)
T ss_pred             hhhhhhhHHHHhhhhhccchhhhhhhccCcc-cccCC---CCeEEEeeeecceEEEEecCC
Confidence                   11111110          000111 12222   356899999999999995443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.37  E-value=0.00071  Score=59.82  Aligned_cols=126  Identities=9%  Similarity=0.066  Sum_probs=86.7

Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-----cccccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCC
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      ...|.++.|...+..++.|+..|.|..+|++....     .....|...|+++..-. ++++|++ ++-+++|..|+..-
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~Lma-S~M~gkikLyD~R~  330 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMA-SDMTGKIKLYDLRA  330 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEee-ccCcCceeEeeehh
Confidence            35677778888889999999999999999987632     33447889999887766 6778775 45556777777664


Q ss_pred             CC-----CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeee
Q 014302          310 KP-----PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF  380 (427)
Q Consensus       310 ~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~  380 (427)
                      .+     ..++||....            .-.-+-..+....+++   +++|   ...+||.++++.++...|..+
T Consensus       331 ~K~~~~V~qYeGHvN~~------------a~l~~~v~~eeg~I~s---~GdD---cytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLS------------AYLPAHVKEEEGSIFS---VGDD---CYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             hhcccceeeeecccccc------------cccccccccccceEEE---ccCe---eEEEEEecccCceeeccCCCC
Confidence            32     2455665422            1112234455666666   7777   459999999998876554433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.32  E-value=0.057  Score=47.09  Aligned_cols=120  Identities=18%  Similarity=0.151  Sum_probs=63.6

Q ss_pred             cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccc------ccccccccceeeccCCceeEEEECCCCCEEE
Q 014302          275 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH------LLPVDLPDIVSLTGSQGIEKIAWDASGERLA  348 (427)
Q Consensus       275 ~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La  348 (427)
                      .+.-.+..++..+||..++ ++...+     . .+..+.+-++      ...+++++.+...-...|-+++.+-+..+++
T Consensus       223 l~~lSiRHld~g~dgtvwf-gcQy~G-----~-~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~  295 (366)
T COG3490         223 LRQLSIRHLDIGRDGTVWF-GCQYRG-----P-RNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA  295 (366)
T ss_pred             hhhcceeeeeeCCCCcEEE-EEEeeC-----C-CccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence            3556788888888888765 332111     0 0011111111      1222333333222233678889987777887


Q ss_pred             EEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          349 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       349 ~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      .++.-++     ...+||..++.++...+..-..         -++-.   ..|  .+|..-+|+|.+|.-.
T Consensus       296 lTSP~GN-----~~vi~da~tG~vv~~a~l~daa---------Gva~~---~~g--f~vssg~G~~~~~s~~  348 (366)
T COG3490         296 LTSPRGN-----RAVIWDAATGAVVSEAALPDAA---------GVAAA---KGG--FAVSSGQGRIIFYSRA  348 (366)
T ss_pred             EecCCCC-----eEEEEEcCCCcEEecccccccc---------cceec---cCc--eEEecCCceEEecccc
Confidence            7654443     3889999999987544321111         11111   112  5566678888887533

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.21  E-value=0.022  Score=42.42  Aligned_cols=67  Identities=18%  Similarity=0.230  Sum_probs=39.8

Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc-eeEEEeeC
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP-LLSVCWSS  411 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~-~l~v~~~~  411 (427)
                      ..|.+++-...+++....    ..   |+|-+|+-......         .. ....++++++..-..+|. -|.+||++
T Consensus        43 ~~v~~L~~~~~~~F~Y~l----~N---GTVGvY~~~~RlWR---------iK-SK~~~~~~~~~D~~gdG~~eLI~Gwsn  105 (111)
T PF14783_consen   43 DKVTSLCSLGGGRFAYAL----AN---GTVGVYDRSQRLWR---------IK-SKNQVTSMAFYDINGDGVPELIVGWSN  105 (111)
T ss_pred             cceEEEEEcCCCEEEEEe----cC---CEEEEEeCcceeee---------ec-cCCCeEEEEEEcCCCCCceEEEEEecC
Confidence            467787777666554332    22   67888876433222         11 222366766665444443 59999999


Q ss_pred             ceEEE
Q 014302          412 GFCCT  416 (427)
Q Consensus       412 g~i~~  416 (427)
                      |+|.+
T Consensus       106 Gkve~  110 (111)
T PF14783_consen  106 GKVEV  110 (111)
T ss_pred             CeEEe
Confidence            99864

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.20  E-value=0.013  Score=56.14  Aligned_cols=161  Identities=19%  Similarity=0.237  Sum_probs=92.0

Q ss_pred             CceeeeEEcCCCCEEEEEe--CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC----CCceEEEecCCeEEEEecc
Q 014302          100 VDLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN----GGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~----~~~~la~g~~~~i~iw~~~  173 (427)
                      |+|..++|.-..+.+++.-  .+|.++.      +.....   +.-..|..++|.|-    ...+||+-....|.||.+.
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kf------Gds~vi---GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKF------GDSKVI---GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCcccc------CCccEe---eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            4788999985555666652  2333332      111111   22245899999985    3468999988999999986


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                      ....                  ....+.+.+..+..                    .+++..   -..+-|+|....|++
T Consensus        91 ~s~~------------------e~~K~l~sQtcEi~--------------------e~~pvL---pQGCVWHPk~~iL~V  129 (671)
T PF15390_consen   91 PSTT------------------ERNKLLMSQTCEIR--------------------EPFPVL---PQGCVWHPKKAILTV  129 (671)
T ss_pred             cCcc------------------ccccceeeeeeecc--------------------CCcccC---CCcccccCCCceEEE
Confidence            1100                  00011111111110                    011111   113458888887775


Q ss_pred             EecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          254 AKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       254 ~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      -.....-.+++++.......  ....+.|.+.||.+||++|+++-+..-.-++|+-..+
T Consensus       130 LT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  130 LTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            54444444566655444222  2677889999999999999988766545566655444

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.16  E-value=0.012  Score=58.94  Aligned_cols=191  Identities=14%  Similarity=0.184  Sum_probs=102.7

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccc
Q 014302          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASF  188 (427)
Q Consensus       110 ~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~  188 (427)
                      ++..+..|+.-..+..+|+...  .......-....|.-++-  ++ +++.+|.. |+|.+-|.+               
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~--~e~r~~~v~a~~v~imR~--Nn-r~lf~G~t~G~V~LrD~~---------------  205 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTE--KETRTTNVSASGVTIMRY--NN-RNLFCGDTRGTVFLRDPN---------------  205 (1118)
T ss_pred             CCcceeecchhhheeeeecccc--eeeeeeeccCCceEEEEe--cC-cEEEeecccceEEeecCC---------------
Confidence            3445666666666667777765  222222222223554443  44 67777766 889888876               


Q ss_pred             cccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec---------CCc
Q 014302          189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF---------DGT  259 (427)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~---------dg~  259 (427)
                                ....+..                          +..|.+.+..+  +-.|+.|++++.         |..
T Consensus       206 ----------s~~~iht--------------------------~~aHs~siSDf--Dv~GNlLitCG~S~R~~~l~~D~F  247 (1118)
T KOG1275|consen  206 ----------SFETIHT--------------------------FDAHSGSISDF--DVQGNLLITCGYSMRRYNLAMDPF  247 (1118)
T ss_pred             ----------cCceeee--------------------------eeccccceeee--eccCCeEEEeecccccccccccch
Confidence                      1122222                          33344455443  446777776654         445


Q ss_pred             EEEEEcCCCCccccccCCCCeeEEEECCCC-CEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          260 FYLWETNTWTSEPWSSTSGFVTGATWDPEG-RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      |+|||+|..+...-......-.-+.|.|.= ..+++++..+ ....++....    ..+..    ........+..+.++
T Consensus       248 vkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sG-q~q~vd~~~l----sNP~~----~~~~v~p~~s~i~~f  318 (1118)
T KOG1275|consen  248 VKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSG-QFQFVDTATL----SNPPA----GVKMVNPNGSGISAF  318 (1118)
T ss_pred             hhhhhhhhhhccCCcccccCchhhhhcccccceEEEEeccc-ceeecccccc----CCCcc----ceeEEccCCCcceeE
Confidence            899999988764333222223456677743 2333333332 2222221111    00000    001111223358999


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ++|++|+.||.   +..+   |.|.+|.-...+.+
T Consensus       319 DiSsn~~alaf---gd~~---g~v~~wa~~~~P~F  347 (1118)
T KOG1275|consen  319 DISSNGDALAF---GDHE---GHVNLWADRPQPQF  347 (1118)
T ss_pred             EecCCCceEEE---eccc---CcEeeecCCCCCcc
Confidence            99999999999   6666   66999984444433

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.14  E-value=0.0065  Score=58.95  Aligned_cols=119  Identities=13%  Similarity=0.134  Sum_probs=75.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC-CcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .|.--+++-.+++|+.|+.-|.+.+|+-..+  .......+ -.+.+..+..|++. .++|.|++ +.|.++.++.... 
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~--~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt~~g~V~v~ql~~~~p-  110 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTG--EMRKLKNEGATGITCVRSVSSVE-YLVAAGTASGRVSVFQLNKELP-  110 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCch--hhhcccccCccceEEEEEecchh-HhhhhhcCCceEEeehhhccCC-
Confidence            3444566778999999999999999876655  33333332 33445666778777 78888877 6666776651000 


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                                         .....+...+                         ..|...|++++|++++..+++|...|
T Consensus       111 -------------------~~~~~~t~~d-------------------------~~~~~rVTal~Ws~~~~k~ysGD~~G  146 (726)
T KOG3621|consen  111 -------------------RDLDYVTPCD-------------------------KSHKCRVTALEWSKNGMKLYSGDSQG  146 (726)
T ss_pred             -------------------Ccceeecccc-------------------------ccCCceEEEEEecccccEEeecCCCc
Confidence                               0000111011                         11556677888888888888888888


Q ss_pred             cEEEEEcCC
Q 014302          259 TFYLWETNT  267 (427)
Q Consensus       259 ~v~iwd~~~  267 (427)
                      +|..-.+.+
T Consensus       147 kv~~~~L~s  155 (726)
T KOG3621|consen  147 KVVLTELDS  155 (726)
T ss_pred             eEEEEEech
Confidence            877776655

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.10  E-value=0.17  Score=44.40  Aligned_cols=200  Identities=20%  Similarity=0.230  Sum_probs=96.7

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      .+..|+|+|+.. ++|+....+.|...+.+  +.........-.+..-.|++..++ .++.+.. ++.+.+.++...+. 
T Consensus        23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~-   98 (248)
T PF06977_consen   23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTT-   98 (248)
T ss_dssp             -EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE----T-
T ss_pred             CccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEEecccc-
Confidence            589999999866 55566666777655543  222222222334568889998777 4444443 47788887751100 


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                                                .+.   ...+..+....         . ..+..++-.++|+|.++.|+++-+..
T Consensus        99 --------------------------~~~---~~~~~~~~l~~---------~-~~~N~G~EGla~D~~~~~L~v~kE~~  139 (248)
T PF06977_consen   99 --------------------------SLD---RADVQKISLGF---------P-NKGNKGFEGLAYDPKTNRLFVAKERK  139 (248)
T ss_dssp             --------------------------T-----EEEEEEEE------------S----SS--EEEEEETTTTEEEEEEESS
T ss_pred             --------------------------ccc---hhhceEEeccc---------c-cCCCcceEEEEEcCCCCEEEEEeCCC
Confidence                                      000   00011111100         0 12445788999999988888777777


Q ss_pred             cEEEEEcCC--CCc-cc------cc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc
Q 014302          259 TFYLWETNT--WTS-EP------WS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI  326 (427)
Q Consensus       259 ~v~iwd~~~--~~~-~~------~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      -.+||.++.  ... ..      +.   .....+.+++++|....|+.-+.....+..++.......   .   ..+...
T Consensus       140 P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~---~---~~L~~g  213 (248)
T PF06977_consen  140 PKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVS---S---LSLDRG  213 (248)
T ss_dssp             SEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEE---E---EE-STT
T ss_pred             ChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEE---E---EEeCCc
Confidence            777777764  111 10      11   244567899999987666666666656655553222100   0   000000


Q ss_pred             e-eec-cCCceeEEEECCCCCEEEE
Q 014302          327 V-SLT-GSQGIEKIAWDASGERLAV  349 (427)
Q Consensus       327 ~-~~~-~~~~i~~v~~sp~g~~La~  349 (427)
                      . .+. .-...-.|+|+++|+..++
T Consensus       214 ~~gl~~~~~QpEGIa~d~~G~LYIv  238 (248)
T PF06977_consen  214 FHGLSKDIPQPEGIAFDPDGNLYIV  238 (248)
T ss_dssp             GGG-SS---SEEEEEE-TT--EEEE
T ss_pred             ccCcccccCCccEEEECCCCCEEEE
Confidence            0 000 0014678999999988777

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.07  E-value=0.0021  Score=63.49  Aligned_cols=107  Identities=19%  Similarity=0.271  Sum_probs=75.1

Q ss_pred             eeEEcCCCCEEEEEeC----CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          104 GVSWHQHKHIVAFISG----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       104 ~l~~sp~g~~lat~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      -.+|||...++|+++.    .|.|.|| .+++..+.-..+   .-.+++++|+|.. .+|+.|.. +.+.+|..+     
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~---P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~-----   89 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTY---PVHATSLCWHPEE-FVLAQGWEMGVSDVQKTN-----   89 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccccc---ceehhhhccChHH-HHHhhccccceeEEEecC-----
Confidence            3579999999999864    5888887 455522121222   2236789999997 88999977 778899876     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                          +.              +..                            +....|..+|..+.||++|..|.++..-|
T Consensus        90 ----~~--------------e~h----------------------------tv~~th~a~i~~l~wS~~G~~l~t~d~~g  123 (1416)
T KOG3617|consen   90 ----TT--------------ETH----------------------------TVVETHPAPIQGLDWSHDGTVLMTLDNPG  123 (1416)
T ss_pred             ----Cc--------------eee----------------------------eeccCCCCCceeEEecCCCCeEEEcCCCc
Confidence                11              000                            01223566788888999999999998889


Q ss_pred             cEEEEEcC
Q 014302          259 TFYLWETN  266 (427)
Q Consensus       259 ~v~iwd~~  266 (427)
                      .|.+|...
T Consensus       124 ~v~lwr~d  131 (1416)
T KOG3617|consen  124 SVHLWRYD  131 (1416)
T ss_pred             eeEEEEee
Confidence            99998765

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.01  E-value=0.04  Score=48.30  Aligned_cols=175  Identities=19%  Similarity=0.196  Sum_probs=83.6

Q ss_pred             eEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCcc-ccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302          231 PIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSE-PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  307 (427)
Q Consensus       231 ~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~-~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~  307 (427)
                      ++..-...+..++|.|+.+.|+ +....+.|..++.+ ++.. .+. ...+....+++..++.+++ +....+.+..+.+
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl-~~Er~~~L~~~~~   93 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVL-SEERDQRLYIFTI   93 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEE-EETTTTEEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEE-EEcCCCcEEEEEE
Confidence            3444445689999999877666 66777888888864 4442 222 3456788999988887766 4566678888888


Q ss_pred             CCCCCCcccccc-ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc----CceEEEeeeeeee
Q 014302          308 ASKPPSLDAHLL-PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR----TPLISLSLIGFIR  382 (427)
Q Consensus       308 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~----~~~~~~~~~~~~~  382 (427)
                      ......+..... ...+  .....+...+-.++|+|.++.|.+.   .+.   .-..||.++.    ..+.......+..
T Consensus        94 ~~~~~~~~~~~~~~~~l--~~~~~~N~G~EGla~D~~~~~L~v~---kE~---~P~~l~~~~~~~~~~~~~~~~~~~~~~  165 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISL--GFPNKGNKGFEGLAYDPKTNRLFVA---KER---KPKRLYEVNGFPGGFDLFVSDDQDLDD  165 (248)
T ss_dssp             ----TT--EEEEEEEE-----S---SS--EEEEEETTTTEEEEE---EES---SSEEEEEEESTT-SS--EEEE-HHHH-
T ss_pred             eccccccchhhceEEec--ccccCCCcceEEEEEcCCCCEEEEE---eCC---CChhhEEEccccCccceeecccccccc
Confidence            654222211110 0000  0001122368999999987777763   222   1245555543    2222222222221


Q ss_pred             CCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302          383 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       383 ~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~  417 (427)
                      .......+..++|+|..  +.++...-.+..|..+
T Consensus       166 ~~~~~~d~S~l~~~p~t--~~lliLS~es~~l~~~  198 (248)
T PF06977_consen  166 DKLFVRDLSGLSYDPRT--GHLLILSDESRLLLEL  198 (248)
T ss_dssp             HT--SS---EEEEETTT--TEEEEEETTTTEEEEE
T ss_pred             ccceeccccceEEcCCC--CeEEEEECCCCeEEEE
Confidence            11122235678899873  4444444334344333

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.99  E-value=0.021  Score=54.72  Aligned_cols=143  Identities=21%  Similarity=0.358  Sum_probs=85.1

Q ss_pred             CCceeeeEeCCCCCCcc-------cCc------eEEeccCCeEEEEEccCC----CEEEEEecCCcEEEEEcCCCCc--c
Q 014302          211 GEQITALSWGPDGRFPG-------LGT------PIRRGFGGLSILKWSPTG----DYFFAAKFDGTFYLWETNTWTS--E  271 (427)
Q Consensus       211 ~~~v~~~~~spdg~~l~-------~~~------~~~~~~~~v~~~~~sp~g----~~l~~~~~dg~v~iwd~~~~~~--~  271 (427)
                      -.++..++|. ||+.+.       .|.      ..-+....|..++|+|-+    ..|++.-..+.|.||.+.....  .
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~   97 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERN   97 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccc
Confidence            4567788887 444311       111      122245678999999854    3455555688999998863221  1


Q ss_pred             ccc-----cC--C--CCeeEEEECCCCCEEEEEEcCCc-eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEEC
Q 014302          272 PWS-----ST--S--GFVTGATWDPEGRMILLAFAGSL-TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD  341 (427)
Q Consensus       272 ~~~-----~~--~--~~v~~v~~spdg~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s  341 (427)
                      ++.     ..  .  ---..+.|+|....|++-+..+- .+..++..+.+.             ...+..++.|.+.+|.
T Consensus        98 K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV-------------kaDi~~~G~IhCACWT  164 (671)
T PF15390_consen   98 KLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV-------------KADIKTSGLIHCACWT  164 (671)
T ss_pred             cceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceE-------------EEeccCCceEEEEEec
Confidence            111     11  1  12246789999888877666552 334444433211             1123456789999999


Q ss_pred             CCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          342 ASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       342 p~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      +||+.|+++...+     =.-++||-....+
T Consensus       165 ~DG~RLVVAvGSs-----LHSyiWd~~qKtL  190 (671)
T PF15390_consen  165 KDGQRLVVAVGSS-----LHSYIWDSAQKTL  190 (671)
T ss_pred             CcCCEEEEEeCCe-----EEEEEecCchhhh
Confidence            9999999964332     3477898654433

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.97  E-value=0.0077  Score=58.49  Aligned_cols=119  Identities=13%  Similarity=0.235  Sum_probs=79.4

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      .+.--+++..+++++.|+.-|.+++|+-..++.....  ...+.+...+.|++..++|+| ...+.+.+..+....+.-.
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAag-t~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAG-TASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhh-cCCceEEeehhhccCCCcc
Confidence            4555667889999999999999999998777665444  355666777788877777655 4554555555544321111


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ....+.      ...++..|++++|++|+..|.+   |...   |+|.+-.+.+
T Consensus       114 ~~~t~~------d~~~~~rVTal~Ws~~~~k~ys---GD~~---Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPC------DKSHKCRVTALEWSKNGMKLYS---GDSQ---GKVVLTELDS  155 (726)
T ss_pred             eeeccc------cccCCceEEEEEecccccEEee---cCCC---ceEEEEEech
Confidence            111111      1114558999999999999977   6665   7788777665

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0029  Score=57.17  Aligned_cols=80  Identities=11%  Similarity=0.049  Sum_probs=66.4

Q ss_pred             EEeccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          232 IRRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       232 ~~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      +..+...|..++|||..+ ++..++.+.+|+|.|+++............+.+++|.-|....++++...|.++++++...
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence            445667788999999998 5558999999999999988875444333899999999999999999888899999998875


Q ss_pred             C
Q 014302          311 P  311 (427)
Q Consensus       311 ~  311 (427)
                      .
T Consensus       269 ~  269 (463)
T KOG1645|consen  269 E  269 (463)
T ss_pred             C
Confidence            3

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.77  E-value=0.016  Score=55.46  Aligned_cols=135  Identities=13%  Similarity=0.144  Sum_probs=71.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE-eccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW-APSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw-~~~~~~~~~  179 (427)
                      ..+.++++|+|+.++++ .||...|+.....    ..   ...+......|.+.+ .+.+.-....|.|+ +.+      
T Consensus        34 ~p~~ls~npngr~v~V~-g~geY~iyt~~~~----r~---k~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~------   98 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLVC-GDGEYEIYTALAW----RN---KAFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK------   98 (443)
T ss_dssp             --SEEEE-TTSSEEEEE-ETTEEEEEETTTT----EE---EEEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE------
T ss_pred             CCeeEEECCCCCEEEEE-cCCEEEEEEccCC----cc---cccCceeEEEEecCc-cEEEEECCCeEEEEEcCc------
Confidence            35789999999999885 5777778762211    11   123455778999865 44444445778886 332      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                         .                 ....                          .++.. ..+..+ |.  |..|...+ ++.
T Consensus        99 ---~-----------------~~~k--------------------------~i~~~-~~~~~I-f~--G~LL~~~~-~~~  127 (443)
T PF04053_consen   99 ---N-----------------EVVK--------------------------SIKLP-FSVEKI-FG--GNLLGVKS-SDF  127 (443)
T ss_dssp             ---E------------------TT-------------------------------S-S-EEEE-E---SSSEEEEE-TTE
T ss_pred             ---c-----------------ccce--------------------------EEcCC-cccceE-Ec--CcEEEEEC-CCC
Confidence               0                 0000                          00000 011111 11  77777665 448


Q ss_pred             EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCcee
Q 014302          260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL  302 (427)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i  302 (427)
                      |.+||+.+++........ .|..+.|+++|++++..+.+.-.+
T Consensus       128 i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~~i~i  169 (443)
T PF04053_consen  128 ICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKDSIYI  169 (443)
T ss_dssp             EEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred             EEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCCeEEE
Confidence            999999988775555433 389999999999999887555333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.0074  Score=57.90  Aligned_cols=69  Identities=19%  Similarity=0.425  Sum_probs=56.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCee-EEEEccCCCceEEEec-CCeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVK-VLEWRPNGGRSLSVGC-KGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~-~l~~sp~~~~~la~g~-~~~i~iw~~~  173 (427)
                      .|.-+.|+|.-.+||++..+|.+.++.++.   +..-...-|...++ +++|.||| ++||+|- +|+|++-|+.
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve   92 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVE   92 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEecc---ceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEcc
Confidence            678899999999999999999998877762   24333343666777 99999999 8999995 5999999998

>smart00320 WD40 WD40 repeats

Probab=96.74  E-value=0.0033  Score=36.35  Aligned_cols=33  Identities=33%  Similarity=0.702  Sum_probs=28.8

Q ss_pred             EEeccCCeEEEEEccCCCEEEEEecCCcEEEEE
Q 014302          232 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWE  264 (427)
Q Consensus       232 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd  264 (427)
                      +..|...+.++.|++++..+++++.|+.+++||
T Consensus         8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        8 LKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667899999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.68  E-value=0.18  Score=44.63  Aligned_cols=157  Identities=20%  Similarity=0.197  Sum_probs=83.3

Q ss_pred             CeEEEEEccCCCEEEEEe-cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeee-CCCCCCcc
Q 014302          238 GLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF-ASKPPSLD  315 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~-~~~~~~~~  315 (427)
                      .+.+.++|++++.++... .++.-.+|-...............+....|+++|...++..... ....+.. .+..    
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~-~~~~~~~~~~g~----   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSG-GVRVVRDSASGT----   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCC-ceEEEEecCCCc----
Confidence            577888999998877433 34444444444443322222344888999999987776544333 3333321 1110    


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec---cC-ceEEEeeeeeeeCCCCCCCce
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR---RT-PLISLSLIGFIRGPGDNPKPV  391 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~---~~-~~~~~~~~~~~~~~~~~~~~~  391 (427)
                      .....++...     ..+.|.++.+||||..+|+......+   +.|.|=-+.   .+ +.....+.....  .....+.
T Consensus       100 ~~~~~v~~~~-----~~~~I~~l~vSpDG~RvA~v~~~~~~---~~v~va~V~r~~~g~~~~l~~~~~~~~--~~~~~v~  169 (253)
T PF10647_consen  100 GEPVEVDWPG-----LRGRITALRVSPDGTRVAVVVEDGGG---GRVYVAGVVRDGDGVPRRLTGPRRVAP--PLLSDVT  169 (253)
T ss_pred             ceeEEecccc-----cCCceEEEEECCCCcEEEEEEecCCC---CeEEEEEEEeCCCCCcceeccceEecc--cccCcce
Confidence            0111111111     11179999999999999997655554   557777653   23 112122222211  2223355


Q ss_pred             eEEeccCCCCCceeEEEeeCc
Q 014302          392 AFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       392 ~~~f~~~~~~g~~l~v~~~~g  412 (427)
                      .++|.+.   +.|+..+-..+
T Consensus       170 ~v~W~~~---~~L~V~~~~~~  187 (253)
T PF10647_consen  170 DVAWSDD---STLVVLGRSAG  187 (253)
T ss_pred             eeeecCC---CEEEEEeCCCC
Confidence            7888775   44444443333

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.63  E-value=0.0059  Score=37.96  Aligned_cols=29  Identities=17%  Similarity=0.356  Sum_probs=27.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE  129 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~  129 (427)
                      .|.+++|+|...+||.++.+|.|.||.++
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            58999999999999999999999999884

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.52  E-value=0.22  Score=43.53  Aligned_cols=61  Identities=13%  Similarity=0.060  Sum_probs=34.7

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       109 p~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      +++.++.+++.++.+..||..++  +.. ........+.......++ .+++...++.+..+|..
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG--~~~-W~~~~~~~~~~~~~~~~~-~v~v~~~~~~l~~~d~~   94 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTG--KVL-WRFDLPGPISGAPVVDGG-RVYVGTSDGSLYALDAK   94 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTS--EEE-EEEECSSCGGSGEEEETT-EEEEEETTSEEEEEETT
T ss_pred             EeCCEEEEEcCCCEEEEEECCCC--CEE-EEeeccccccceeeeccc-ccccccceeeeEecccC
Confidence            35667777789999999998777  221 111112222211222233 56666666777788865

...

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.49  E-value=0.23  Score=44.06  Aligned_cols=153  Identities=17%  Similarity=0.210  Sum_probs=84.9

Q ss_pred             ceeeeEEcCCCCEEEEEe-CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .+.+.+++++|+.+|... .++.-.||-...... ......  ...+...+|++++ .+.+.... ....++.....   
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~---   97 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLT--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSAS---   97 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeecc--CCccccccccCCC-CEEEEEcCCCceEEEEecCC---
Confidence            688999999999887665 233333443433321 222222  2378899999997 56555543 55555532100   


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe---
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK---  255 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~---  255 (427)
                           +                          ......+.|.             ...+.|..+.+||||..++.-.   
T Consensus        98 -----g--------------------------~~~~~~v~~~-------------~~~~~I~~l~vSpDG~RvA~v~~~~  133 (253)
T PF10647_consen   98 -----G--------------------------TGEPVEVDWP-------------GLRGRITALRVSPDGTRVAVVVEDG  133 (253)
T ss_pred             -----C--------------------------cceeEEeccc-------------ccCCceEEEEECCCCcEEEEEEecC
Confidence                 0                          0000011110             0011688888899998887333   


Q ss_pred             cCCcEEEEEcCCCCc---cc------cc-cCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          256 FDGTFYLWETNTWTS---EP------WS-STSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~---~~------~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                      .++.|.+--+.....   ..      .. .....+.++.|.+++..++.+...+.....
T Consensus       134 ~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  134 GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR  192 (253)
T ss_pred             CCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence            346666655432111   11      11 335688999999999988877666654443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>smart00320 WD40 WD40 repeats

Probab=96.47  E-value=0.0048  Score=35.65  Aligned_cols=27  Identities=15%  Similarity=0.207  Sum_probs=25.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRD  127 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd  127 (427)
                      .|++++|++++.++++++.|+.+++|+
T Consensus        14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            689999999999999999999999985

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.42  E-value=0.93  Score=43.37  Aligned_cols=66  Identities=12%  Similarity=0.130  Sum_probs=45.8

Q ss_pred             eeEEcCCCCEEEEEeCC-----------CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302          104 GVSWHQHKHIVAFISGS-----------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (427)
Q Consensus       104 ~l~~sp~g~~lat~~~d-----------~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~  172 (427)
                      .++.+|.|--||....+           ..|+||+....  ....+...+ +.+.++.|+.+. .++++..+|.++++++
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~--ll~~i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~  108 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK--LLSSIPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDL  108 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC--EeEEEEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeC
Confidence            34667777777766443           14778765544  333333333 789999999876 8889999999999998


Q ss_pred             c
Q 014302          173 S  173 (427)
Q Consensus       173 ~  173 (427)
                      .
T Consensus       109 ~  109 (410)
T PF04841_consen  109 F  109 (410)
T ss_pred             C
Confidence            5

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.37  E-value=0.0024  Score=61.18  Aligned_cols=155  Identities=12%  Similarity=0.196  Sum_probs=91.7

Q ss_pred             ceeeeEEcCC-CCEEEEE----eCCCeEEEEEccCC---CCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEe
Q 014302          101 DLQGVSWHQH-KHIVAFI----SGSTQVIVRDYEDS---GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWA  171 (427)
Q Consensus       101 ~V~~l~~sp~-g~~lat~----~~d~~v~vwd~~~~---~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~  171 (427)
                      ..++++|++- .++||.|    -.|..+.|||+...   ..+......+......+++|-.+. +++.+|.. ..++++|
T Consensus       104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifd  182 (783)
T KOG1008|consen  104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFD  182 (783)
T ss_pred             cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhh
Confidence            6789999884 4588887    34678899999876   111222222244566788898666 55555544 6888888


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCCE
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGDY  250 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~~  250 (427)
                      +.-         .              . .....+.                            ...+..+..+| .+.+
T Consensus       183 lRq---------s--------------~-~~~~svn----------------------------Tk~vqG~tVdp~~~nY  210 (783)
T KOG1008|consen  183 LRQ---------S--------------L-DSVSSVN----------------------------TKYVQGITVDPFSPNY  210 (783)
T ss_pred             hhh---------h--------------h-hhhhhhh----------------------------hhhcccceecCCCCCc
Confidence            750         0              0 0000000                            11233455566 5667


Q ss_pred             EEEEecCCcEEEEE-cCCCCc-cccccC-----CCCeeEEEECCCCCEE-EEEEcCCceeeeeeeCC
Q 014302          251 FFAAKFDGTFYLWE-TNTWTS-EPWSST-----SGFVTGATWDPEGRMI-LLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       251 l~~~~~dg~v~iwd-~~~~~~-~~~~~~-----~~~v~~v~~spdg~~l-~~~~~~~~~i~~~~~~~  309 (427)
                      +++.. ||.|.+|| .+..+. .....+     -..+..++|+|-..-+ ++...+.++|+.+.+..
T Consensus       211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            77665 99999999 444333 111111     2248999999965433 34445566888877665

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=96.35  E-value=0.03  Score=56.17  Aligned_cols=142  Identities=11%  Similarity=0.164  Sum_probs=91.4

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---------CeEEEEeccCCCCc
Q 014302          108 HQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---------GGICIWAPSYPGNA  178 (427)
Q Consensus       108 sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---------~~i~iw~~~~~~~~  178 (427)
                      ..+++.|.+|...|+|.+-|..+.  +.......|.+.|.++..  .|..++++|..         .-|+|||+.     
T Consensus       184 R~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR-----  254 (1118)
T KOG1275|consen  184 RYNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR-----  254 (1118)
T ss_pred             EecCcEEEeecccceEEeecCCcC--ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhh-----
Confidence            346789999999999999887766  666677789999986554  56466777632         336788886     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CEEEEEecC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DYFFAAKFD  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d  257 (427)
                                             .++        .+.               ++.-+. +-..+.|.|.= ..+++.+..
T Consensus       255 -----------------------mmr--------al~---------------PI~~~~-~P~flrf~Psl~t~~~V~S~s  287 (1118)
T KOG1275|consen  255 -----------------------MMR--------ALS---------------PIQFPY-GPQFLRFHPSLTTRLAVTSQS  287 (1118)
T ss_pred             -----------------------hhh--------ccC---------------Cccccc-CchhhhhcccccceEEEEecc
Confidence                                   011        000               111111 11345566643 356677888


Q ss_pred             CcEEEEEcCCCCcc----c-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          258 GTFYLWETNTWTSE----P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       258 g~v~iwd~~~~~~~----~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                      |.+.+-|..+....    . +......+.++++|++|+.++++..++ .+.+|.
T Consensus       288 Gq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g-~v~~wa  340 (1118)
T KOG1275|consen  288 GQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEG-HVNLWA  340 (1118)
T ss_pred             cceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccC-cEeeec
Confidence            99999985443321    1 124455699999999999999875544 555554

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.33  E-value=0.0033  Score=62.49  Aligned_cols=143  Identities=13%  Similarity=0.086  Sum_probs=91.8

Q ss_pred             EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCc-eeeeeeeCC
Q 014302          232 IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSL-TLGSIHFAS  309 (427)
Q Consensus       232 ~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~-~i~~~~~~~  309 (427)
                      ++.+....++++|+-+.++|++|+..|.|++|++.++... .+..|...++.+.=+.||..+++.+.-.. ....|.+.+
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s 1176 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASS 1176 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccc
Confidence            4557788999999999999999999999999999999874 45589999999999999998887554331 223333333


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCC
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK  389 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  389 (427)
                      .-.  ..|..             ..-.++.|+...++-++   |+..   ..+.|||++++..+.....+.+..  .+. 
T Consensus      1177 ~~~--~~Hsf-------------~ed~~vkFsn~~q~r~~---gt~~---d~a~~YDvqT~~~l~tylt~~~~~--~y~- 1232 (1516)
T KOG1832|consen 1177 TGG--PRHSF-------------DEDKAVKFSNSLQFRAL---GTEA---DDALLYDVQTCSPLQTYLTDTVTS--SYS- 1232 (1516)
T ss_pred             ccC--ccccc-------------cccceeehhhhHHHHHh---cccc---cceEEEecccCcHHHHhcCcchhh--hhh-
Confidence            100  01111             03367778866555444   2221   238899999876543222222111  221 


Q ss_pred             ceeEEeccC
Q 014302          390 PVAFSFHDK  398 (427)
Q Consensus       390 ~~~~~f~~~  398 (427)
                      ..+..|.|.
T Consensus      1233 ~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1233 NNLAHFSPC 1241 (1516)
T ss_pred             ccccccCCC
Confidence            246677776

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.021  Score=54.92  Aligned_cols=48  Identities=23%  Similarity=0.314  Sum_probs=40.1

Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECC
Q 014302          240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDP  287 (427)
Q Consensus       240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~sp  287 (427)
                      .+++|.|||+.||+|-.||+|++.|+.++....-  ......|..+.|++
T Consensus        66 ~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   66 ASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             eeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence            3899999999999999999999999998876333  35667788888874

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.21  E-value=0.2  Score=51.20  Aligned_cols=62  Identities=15%  Similarity=0.222  Sum_probs=46.5

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCC
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGS  299 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~  299 (427)
                      ....|++-+.+| +||+|+.+|.||+||--..+..+ +.+...+|..|+.+.||++|+.++..-
T Consensus       578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ty  640 (794)
T PF08553_consen  578 NNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTY  640 (794)
T ss_pred             CCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecce
Confidence            346677766666 79999999999999943322222 336789999999999999999776443

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.11  E-value=1.2  Score=41.46  Aligned_cols=68  Identities=7%  Similarity=-0.086  Sum_probs=32.4

Q ss_pred             EEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          106 SWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       106 ~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      +|.+||+.|+.+ ..|+.-.+|-++-...+..++..+.........++|++..++..-....+.--+++
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~  110 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLD  110 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECC
Confidence            688999866554 44665555555444336666665543334456778888555555554556555554

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.06  E-value=0.083  Score=53.80  Aligned_cols=69  Identities=12%  Similarity=0.092  Sum_probs=53.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      ..+|++-+.+| +||+|+.+|.|||||--.  ........+...+|.+|..+.|| +.+.+.++..+.|++..
T Consensus       579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g--~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLG--KRAKTALPGLGDPIIGIDVTADG-KWILATCKTYLLLIDTL  647 (794)
T ss_pred             CceEEEecCCc-eEEEEeCCCcEEeecccc--hhhhhcCCCCCCCeeEEEecCCC-cEEEEeecceEEEEEEe
Confidence            56777766666 889999999999998432  34555556778899999999999 56666677888888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=1.4  Score=41.82  Aligned_cols=203  Identities=18%  Similarity=0.179  Sum_probs=117.7

Q ss_pred             eeeeEEcCCCCEE-EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---CeEEEEeccCCCC
Q 014302          102 LQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GGICIWAPSYPGN  177 (427)
Q Consensus       102 V~~l~~sp~g~~l-at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~i~iw~~~~~~~  177 (427)
                      -..++.++.+..+ ++...+..|.+.|....  ..... .........++++|+++.+.++-..   +.+.+.|-.    
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~--~~~~~-~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~----  148 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATN--TVLGS-IPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA----  148 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCccc--ceeeE-eeeccCCceEEECCCCCEEEEEecccCCceEEEEeCC----
Confidence            3567888888844 44445689999775544  11111 1111256789999999666655542   444444433    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEec
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKF  256 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~  256 (427)
                           +.                .....                          ......+ ..++++|+|..++ +-..
T Consensus       149 -----t~----------------~~~~~--------------------------~~vG~~P-~~~a~~p~g~~vyv~~~~  180 (381)
T COG3391         149 -----TN----------------KVTAT--------------------------IPVGNTP-TGVAVDPDGNKVYVTNSD  180 (381)
T ss_pred             -----CC----------------eEEEE--------------------------EecCCCc-ceEEECCCCCeEEEEecC
Confidence                 00                11110                          1111122 6788999999877 4457


Q ss_pred             CCcEEEEEcCCCCccc-----cccCCCCeeEEEECCCCCEEEEEEcCC--ceeeeeeeCCCCCCccccccccccccceee
Q 014302          257 DGTFYLWETNTWTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~-----~~~~~~~v~~v~~spdg~~l~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      ++.|.+.|........     .......-..+.++|+|.++.......  ..+..++.......  ....+.        
T Consensus       181 ~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~--~~~~~~--------  250 (381)
T COG3391         181 DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT--ATDLPV--------  250 (381)
T ss_pred             CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE--Eecccc--------
Confidence            8899999976655442     123344556889999999887765544  35555554443110  000000        


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      ... ....+..+|+|+++.+.....     +.+.+.|..+..+...
T Consensus       251 ~~~-~~~~v~~~p~g~~~yv~~~~~-----~~V~vid~~~~~v~~~  290 (381)
T COG3391         251 GSG-APRGVAVDPAGKAAYVANSQG-----GTVSVIDGATDRVVKT  290 (381)
T ss_pred             ccC-CCCceeECCCCCEEEEEecCC-----CeEEEEeCCCCceeee
Confidence            000 235678999999998854342     4588999887766543

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.05  E-value=1.1  Score=40.78  Aligned_cols=158  Identities=15%  Similarity=0.146  Sum_probs=76.0

Q ss_pred             CEEEEEecCCcEEEEEcCCCCccc------cc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccc
Q 014302          249 DYFFAAKFDGTFYLWETNTWTSEP------WS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  321 (427)
Q Consensus       249 ~~l~~~~~dg~v~iwd~~~~~~~~------~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  321 (427)
                      +.+.+-|.||++....+.......      +. .........+++..+..+++. +-.|.++..++......+..   ++
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~~~---~~  223 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKFGK---PW  223 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEEEE---EE
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE-ecCCEEEEEeccCCcccccC---cc
Confidence            346666677877777776333211      11 111122344455555555554 44458888888776432211   11


Q ss_pred             cccc---ceeeccCCceeEEEECCCCCEEEEEEecCCCc----ceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEE
Q 014302          322 DLPD---IVSLTGSQGIEKIAWDASGERLAVSYKGGDDI----YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  394 (427)
Q Consensus       322 ~~~~---~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~----~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (427)
                      ++-.   ...--..+.-+-+++++....|.+....+.+.    -...|-++|+.+++.+.-.+...-        ..+|+
T Consensus       224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--------~~Si~  295 (342)
T PF06433_consen  224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP--------IDSIA  295 (342)
T ss_dssp             ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--------ESEEE
T ss_pred             cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc--------cceEE
Confidence            1100   00000112446678887666666544322221    124588889999988765554321        11444


Q ss_pred             eccCCCCCcee-EEEeeCceEEEEecc
Q 014302          395 FHDKFKQGPLL-SVCWSSGFCCTYPLI  420 (427)
Q Consensus       395 f~~~~~~g~~l-~v~~~~g~i~~~~~~  420 (427)
                      ...+  +..+| ++.-.+|.+.+|+.-
T Consensus       296 Vsqd--~~P~L~~~~~~~~~l~v~D~~  320 (342)
T PF06433_consen  296 VSQD--DKPLLYALSAGDGTLDVYDAA  320 (342)
T ss_dssp             EESS--SS-EEEEEETTTTEEEEEETT
T ss_pred             EccC--CCcEEEEEcCCCCeEEEEeCc
Confidence            4432  22233 454457889988853

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.03  E-value=0.024  Score=35.25  Aligned_cols=29  Identities=24%  Similarity=0.476  Sum_probs=27.2

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEc
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWET  265 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~  265 (427)
                      ..|..++|+|....||.++.+|.|.+|.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            46889999999999999999999999998

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.01  E-value=1.4  Score=41.59  Aligned_cols=136  Identities=12%  Similarity=0.082  Sum_probs=71.5

Q ss_pred             CCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce
Q 014302          248 GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV  327 (427)
Q Consensus       248 g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
                      +..+++++.+|.++.||..+++..-.... .....+.  .++..++++ ..++.++.++..+.....+....        
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~~~~~p~--~~~~~vyv~-~~~G~l~~~d~~tG~~~W~~~~~--------  308 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRDA-SSYQGPA--VDDNRLYVT-DADGVVVALDRRSGSELWKNDEL--------  308 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeecc-CCccCce--EeCCEEEEE-CCCCeEEEEECCCCcEEEccccc--------
Confidence            55788888899999999988764221111 1111222  235566554 44557777776554211110000        


Q ss_pred             eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEE
Q 014302          328 SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV  407 (427)
Q Consensus       328 ~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v  407 (427)
                         ......+...  .+..|++   ++.+   |.|+++|..+++.+...+.+     ..     .+...|...++ .|-+
T Consensus       309 ---~~~~~ssp~i--~g~~l~~---~~~~---G~l~~~d~~tG~~~~~~~~~-----~~-----~~~~sp~~~~~-~l~v  366 (377)
T TIGR03300       309 ---KYRQLTAPAV--VGGYLVV---GDFE---GYLHWLSREDGSFVARLKTD-----GS-----GIASPPVVVGD-GLLV  366 (377)
T ss_pred             ---cCCccccCEE--ECCEEEE---EeCC---CEEEEEECCCCCEEEEEEcC-----CC-----ccccCCEEECC-EEEE
Confidence               0001112122  3567766   4455   67999999998876433211     10     01122322233 3667


Q ss_pred             EeeCceEEEE
Q 014302          408 CWSSGFCCTY  417 (427)
Q Consensus       408 ~~~~g~i~~~  417 (427)
                      +..+|.|..|
T Consensus       367 ~~~dG~l~~~  376 (377)
T TIGR03300       367 QTRDGDLYAF  376 (377)
T ss_pred             EeCCceEEEe
Confidence            8899998876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.97  E-value=1.2  Score=40.51  Aligned_cols=104  Identities=17%  Similarity=0.287  Sum_probs=60.0

Q ss_pred             cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceee-ccCCceeEEEECCCCCEEEEEEec
Q 014302          275 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       275 ~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      .+-..-+.++||||++.|+++-+....++.+.+........+...      .... ...+..-.++.+.+|.+-+++..+
T Consensus       160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~------~~~~~~~~G~PDG~~vDadG~lw~~a~~~  233 (307)
T COG3386         160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG------FVDFDEEPGLPDGMAVDADGNLWVAAVWG  233 (307)
T ss_pred             CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce------EEEccCCCCCCCceEEeCCCCEEEecccC
Confidence            445566789999999999988777677777777642111111100      0011 123456677888888877543222


Q ss_pred             CCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302          354 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                      +     +.|.+|+.. ++++     +.+.-+..  .+.+++|..
T Consensus       234 g-----~~v~~~~pd-G~l~-----~~i~lP~~--~~t~~~FgG  264 (307)
T COG3386         234 G-----GRVVRFNPD-GKLL-----GEIKLPVK--RPTNPAFGG  264 (307)
T ss_pred             C-----ceEEEECCC-CcEE-----EEEECCCC--CCccceEeC
Confidence            2     248899887 5554     23333322  244666664

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.88  E-value=0.3  Score=46.87  Aligned_cols=118  Identities=11%  Similarity=0.144  Sum_probs=69.1

Q ss_pred             EEEEEccCCCEEE-EEecCCc----EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc----------eeee
Q 014302          240 SILKWSPTGDYFF-AAKFDGT----FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL----------TLGS  304 (427)
Q Consensus       240 ~~~~~sp~g~~l~-~~~~dg~----v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~----------~i~~  304 (427)
                      ..+++||||++|| +-+..|.    |+++|+.+++...-.-.......+.|.+|++.+++...+..          .++.
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            3567899999988 4455554    99999999865321101111223999999999888765442          2344


Q ss_pred             eeeCCCCCCccccccccccccceeecc--CCc-eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTG--SQG-IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      +.+......  .         ...+..  ... ...+..++|+++|++......+  ...|++.++...
T Consensus       207 ~~~gt~~~~--d---------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~  262 (414)
T PF02897_consen  207 HKLGTPQSE--D---------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDG  262 (414)
T ss_dssp             EETTS-GGG------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCT
T ss_pred             EECCCChHh--C---------eeEEeecCCCcEEEEEEecCcccEEEEEEEcccc--CCeEEEEecccc
Confidence            444332100  0         011111  112 5678899999999875544443  145888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.87  E-value=1.7  Score=41.27  Aligned_cols=71  Identities=17%  Similarity=0.200  Sum_probs=48.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-----------------------------------------ceeec
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-----------------------------------------ACILT  139 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-----------------------------------------~~~~~  139 (427)
                      .|+.++|+++..-||+|...|.|.||.+......                                         +..+.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            5899999999999999999999999887543000                                         01111


Q ss_pred             cCCcCCeeEEEEccCCCceEEEecC-CeEEEEecc
Q 014302          140 SDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPS  173 (427)
Q Consensus       140 ~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~  173 (427)
                      ....+.|++++.|.-|  ++|+|.. |.+.|.|+.
T Consensus        83 ~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~R  115 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLR  115 (395)
T ss_dssp             ---S-SEEEEEE-BTS--EEEEEETTSEEEEEETT
T ss_pred             eccCCcEeEEecCCCc--EEEEEecCCcEEEEECC
Confidence            2246789999998665  8888876 889999997

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.62  E-value=0.63  Score=44.78  Aligned_cols=143  Identities=17%  Similarity=0.184  Sum_probs=69.9

Q ss_pred             CCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC
Q 014302          144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  223 (427)
Q Consensus       144 ~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  223 (427)
                      .....++++|+| +.+++.+++.-.|+...                         .      ++                
T Consensus        33 ~~p~~ls~npng-r~v~V~g~geY~iyt~~-------------------------~------~r----------------   64 (443)
T PF04053_consen   33 IYPQSLSHNPNG-RFVLVCGDGEYEIYTAL-------------------------A------WR----------------   64 (443)
T ss_dssp             S--SEEEE-TTS-SEEEEEETTEEEEEETT-------------------------T------TE----------------
T ss_pred             cCCeeEEECCCC-CEEEEEcCCEEEEEEcc-------------------------C------Cc----------------
Confidence            346889999999 77777777877777643                         0      00                


Q ss_pred             CCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302          224 RFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  303 (427)
Q Consensus       224 ~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~  303 (427)
                              - ...+....+.|.+.++ +|+-...+.|.|+.--.............+..+--   |..|+..+. + .+.
T Consensus        65 --------~-k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~-~-~i~  129 (443)
T PF04053_consen   65 --------N-KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSS-D-FIC  129 (443)
T ss_dssp             --------E-EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEET-T-EEE
T ss_pred             --------c-cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECC-C-CEE
Confidence                    0 0122344678888665 55555588899973222211111122223444433   887776543 3 444


Q ss_pred             eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      .++......             ...+... .|..|.|+++|+++|..  ..+     .+.|++....
T Consensus       130 ~yDw~~~~~-------------i~~i~v~-~vk~V~Ws~~g~~val~--t~~-----~i~il~~~~~  175 (443)
T PF04053_consen  130 FYDWETGKL-------------IRRIDVS-AVKYVIWSDDGELVALV--TKD-----SIYILKYNLE  175 (443)
T ss_dssp             EE-TTT--E-------------EEEESS--E-EEEEE-TTSSEEEEE---S------SEEEEEE-HH
T ss_pred             EEEhhHcce-------------eeEEecC-CCcEEEEECCCCEEEEE--eCC-----eEEEEEecch
Confidence            444443311             1111111 47899999999999995  222     2888776544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.40  E-value=1.5  Score=38.55  Aligned_cols=56  Identities=20%  Similarity=0.274  Sum_probs=41.7

Q ss_pred             EEEccCCCEEEEEecC-----CcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEc
Q 014302          242 LKWSPTGDYFFAAKFD-----GTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFA  297 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~  297 (427)
                      -.|||||++|+..-.|     |.|-|||.+.+-.  -.+..|.-.-..+.|.+||+.++.+..
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            3589999999955433     6799999985433  345567777788999999999987643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.34  E-value=0.66  Score=43.57  Aligned_cols=60  Identities=7%  Similarity=0.088  Sum_probs=33.3

Q ss_pred             CCeEEEEEccCCCEEEEEe-cCCcEEEEEcCCCCccccc--------------------cCCCCeeEEEECCCCCEEEEE
Q 014302          237 GGLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWS--------------------STSGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~~~--------------------~~~~~v~~v~~spdg~~l~~~  295 (427)
                      .-++.+.+|.|.++|+.++ ..|.||.||+......++.                    ...+....+..|.||++|+++
T Consensus       312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            4578899999999999554 5899999999865542211                    112344778899999999886


Q ss_pred             E
Q 014302          296 F  296 (427)
Q Consensus       296 ~  296 (427)
                      .
T Consensus       392 n  392 (461)
T PF05694_consen  392 N  392 (461)
T ss_dssp             -
T ss_pred             e
Confidence            5

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.25  E-value=1.1  Score=41.71  Aligned_cols=143  Identities=17%  Similarity=0.200  Sum_probs=67.7

Q ss_pred             cCCeeEEEEccCCCceEEEecC---Ce--EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee
Q 014302          143 QRDVKVLEWRPNGGRSLSVGCK---GG--ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL  217 (427)
Q Consensus       143 ~~~v~~l~~sp~~~~~la~g~~---~~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  217 (427)
                      ...+..+.|||....+|+-+-.   ..  -+||-++.++.                     ...++.  +......+..=
T Consensus       187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~---------------------~~~~v~--~~~~~e~~gHE  243 (386)
T PF14583_consen  187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS---------------------NVKKVH--RRMEGESVGHE  243 (386)
T ss_dssp             SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS------------------------EESS-----TTEEEEEE
T ss_pred             CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC---------------------cceeee--cCCCCcccccc
Confidence            3457789999988788877643   22  36898873322                     112221  11123445566


Q ss_pred             EeCCCCCCcc-------------------cCceEE-eccCCeEEEEEccCCCEEE-EEecC---------------CcEE
Q 014302          218 SWGPDGRFPG-------------------LGTPIR-RGFGGLSILKWSPTGDYFF-AAKFD---------------GTFY  261 (427)
Q Consensus       218 ~~spdg~~l~-------------------~~~~~~-~~~~~v~~~~~sp~g~~l~-~~~~d---------------g~v~  261 (427)
                      -|.|||..+.                   ++.... ........+--++||++++ =|+..               -.|+
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~  323 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY  323 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence            7788877632                   111100 0112233444578999887 23321               1456


Q ss_pred             EEEcCCCCccccccC-----------CCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeC
Q 014302          262 LWETNTWTSEPWSST-----------SGFVTGATWDPEGRMILLAFAGSL--TLGSIHFA  308 (427)
Q Consensus       262 iwd~~~~~~~~~~~~-----------~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~  308 (427)
                      ++++..+.......|           ...-..+.|+|||+++++.+...|  .|+.+.+.
T Consensus       324 ~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~  383 (386)
T PF14583_consen  324 LFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP  383 (386)
T ss_dssp             EEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred             EeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence            677765553222211           112357899999999999887665  45555443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.13  E-value=0.97  Score=40.00  Aligned_cols=132  Identities=16%  Similarity=0.185  Sum_probs=77.8

Q ss_pred             CceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          229 GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       229 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                      ++++.+-...+.++.|+|+.+.|++......-.|+=...++.....  ..-.....+.|.-+|++++ +...+..++.+.
T Consensus        78 akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi-~dER~~~l~~~~  156 (316)
T COG3204          78 AKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVI-VDERDRALYLFT  156 (316)
T ss_pred             ccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEE-EehhcceEEEEE
Confidence            3444444556999999999999997776666666655555553322  2344556788888888776 456667888887


Q ss_pred             eCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      +......+......+.+..  ..........++|+|..+.|.++   -+.   .-+.||.++.
T Consensus       157 vd~~t~~~~~~~~~i~L~~--~~k~N~GfEGlA~d~~~~~l~~a---KEr---~P~~I~~~~~  211 (316)
T COG3204         157 VDADTTVISAKVQKIPLGT--TNKKNKGFEGLAWDPVDHRLFVA---KER---NPIGIFEVTQ  211 (316)
T ss_pred             EcCCccEEeccceEEeccc--cCCCCcCceeeecCCCCceEEEE---Ecc---CCcEEEEEec
Confidence            7764221111110011111  01112256889999998888773   332   1255655543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.08  E-value=2.3  Score=37.76  Aligned_cols=172  Identities=15%  Similarity=0.222  Sum_probs=91.2

Q ss_pred             CCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC
Q 014302          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG  220 (427)
Q Consensus       141 ~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  220 (427)
                      +....|.++.|+|+...++++.....-.||-.. .|+                        .++.+.             
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-~Gd------------------------lirtiP-------------  124 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-EGD------------------------LIRTIP-------------  124 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEec-CCc------------------------eEEEec-------------
Confidence            344569999999999778888777666666433 111                        111110             


Q ss_pred             CCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc------cc-----ccCCCCeeEEEECCCC
Q 014302          221 PDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE------PW-----SSTSGFVTGATWDPEG  289 (427)
Q Consensus       221 pdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~------~~-----~~~~~~v~~v~~spdg  289 (427)
                                 +. .......+.|..+|++.++--.++.+.++.+......      .+     ......-..++|.|.+
T Consensus       125 -----------L~-g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~  192 (316)
T COG3204         125 -----------LT-GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD  192 (316)
T ss_pred             -----------cc-ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC
Confidence                       00 0122334556666777667667777777665544210      11     1225567899999999


Q ss_pred             CEEEEEEcCCc-eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          290 RMILLAFAGSL-TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       290 ~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      ..|+++-..+. .|+.++...  ..+..|..-..- ....+. -..|+++.|++....|.+-  +.+.   +.|.-.|..
T Consensus       193 ~~l~~aKEr~P~~I~~~~~~~--~~l~~~~~~~~~-~~~~~f-~~DvSgl~~~~~~~~LLVL--S~ES---r~l~Evd~~  263 (316)
T COG3204         193 HRLFVAKERNPIGIFEVTQSP--SSLSVHASLDPT-ADRDLF-VLDVSGLEFNAITNSLLVL--SDES---RRLLEVDLS  263 (316)
T ss_pred             ceEEEEEccCCcEEEEEecCC--cccccccccCcc-cccceE-eeccccceecCCCCcEEEE--ecCC---ceEEEEecC
Confidence            98887755542 455554222  122222110000 000000 0167889999655544443  3333   446666765


Q ss_pred             cCc
Q 014302          369 RTP  371 (427)
Q Consensus       369 ~~~  371 (427)
                      ...
T Consensus       264 G~~  266 (316)
T COG3204         264 GEV  266 (316)
T ss_pred             CCe
Confidence            554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=94.77  E-value=0.58  Score=44.30  Aligned_cols=164  Identities=14%  Similarity=0.128  Sum_probs=79.1

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CCCccc
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PPSLDA  316 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~~~~~  316 (427)
                      .|..++|+++...|+++...|.|.||.....+..... ....-....+.+    +  ...+. .-.+.++.+. .+.++.
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~-~~~~~~~~~~~~----~--~~~~~-~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNR-EQPPDLDYNFRR----F--SLNNS-PGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--------GGGS-S-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCcc-CCCcccCccccc----c--cccCC-CcceEEehhhCCccccc
Confidence            4788999999999999999999999977654332100 000011111111    0  00000 1123333332 112222


Q ss_pred             cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeee-eeCCCCCCCceeEEe
Q 014302          317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF-IRGPGDNPKPVAFSF  395 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f  395 (427)
                      .+.|.    .......++|++++.| |=-++|++|.+      |.+.|.|++...++-.....- .........+.++.|
T Consensus        75 gf~P~----~l~~~~~g~vtal~~S-~iGFvaigy~~------G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF  143 (395)
T PF08596_consen   75 GFLPL----TLLDAKQGPVTALKNS-DIGFVAIGYES------GSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF  143 (395)
T ss_dssp             EEEEE----EEE---S-SEEEEEE--BTSEEEEEETT------SEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE
T ss_pred             ccCch----hheeccCCcEeEEecC-CCcEEEEEecC------CcEEEEECCCCeEEeeccccccccccccccCeeEEEE
Confidence            23332    1111235699999998 55599996544      669999997766543322111 001111122335555


Q ss_pred             ccC-----CCCCceeEEEeeCceEEEEecc
Q 014302          396 HDK-----FKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       396 ~~~-----~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      .--     ....-+|.||++.|.+.+|.+.
T Consensus       144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  144 SVMTLGGDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             EEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence            421     1122479999999999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.77  E-value=2.2  Score=39.01  Aligned_cols=69  Identities=10%  Similarity=-0.048  Sum_probs=39.1

Q ss_pred             ceeeeEEcCCCCEEEEE--eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFI--SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~--~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~  174 (427)
                      ....++++.||+++++.  +--..|.|-|+...  +..... .-. .+..+-=++.. .+.+.+.||++.-..++.
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~--kvv~ei-~~P-GC~~iyP~~~~-~F~~lC~DGsl~~v~Ld~  166 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAK--KVVGEI-DTP-GCWLIYPSGNR-GFSMLCGDGSLLTVTLDA  166 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT--EEEEEE-EGT-SEEEEEEEETT-EEEEEETTSCEEEEEETS
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCCC--ceeeee-cCC-CEEEEEecCCC-ceEEEecCCceEEEEECC
Confidence            45667889999988775  34467888887765  232211 111 22222212222 466667788888777773

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.75  E-value=0.84  Score=43.57  Aligned_cols=58  Identities=14%  Similarity=0.270  Sum_probs=43.8

Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcC
Q 014302          239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAG  298 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~  298 (427)
                      ..|.+-..+| +|++|+.+|.||+||- .+..  ..+.+...+|..|.-+.||++|++++..
T Consensus       433 Fsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  433 FSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             cceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            3444444444 8999999999999997 4433  3444888999999999999999976643

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=94.70  E-value=0.66  Score=34.74  Aligned_cols=66  Identities=12%  Similarity=0.088  Sum_probs=42.8

Q ss_pred             eeeeEEcC---CC-CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          102 LQGVSWHQ---HK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       102 V~~l~~sp---~g-~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      |++|++..   || +-|++|+.|..||||+=+.    . .........|+++.-...+ ++..+-..|+|-+|+-.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~-~~Ei~e~~~v~~L~~~~~~-~F~Y~l~NGTVGvY~~~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----I-VAEITETDKVTSLCSLGGG-RFAYALANGTVGVYDRS   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----E-EEEEecccceEEEEEcCCC-EEEEEecCCEEEEEeCc
Confidence            66676644   44 3899999999999976332    2 2222334568888877665 44444455888887654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.61  E-value=4.2  Score=38.54  Aligned_cols=127  Identities=19%  Similarity=0.226  Sum_probs=83.5

Q ss_pred             CeEEEEEccCCCEEEEEec---CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302          238 GLSILKWSPTGDYFFAAKF---DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  314 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~  314 (427)
                      ....++++|+++.++++..   ++++.+.|..+.+..........-..++++|+|..++.+...++.+..++........
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~  196 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR  196 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence            4457889999988885544   6888888888777644442222228999999999888877677777777744431110


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                       ...       ............+.++|+|.++.+....+.+   +.+...|..++.....
T Consensus       197 -~~~-------~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~---~~v~~id~~~~~v~~~  246 (381)
T COG3391         197 -GSV-------GSLVGVGTGPAGIAVDPDGNRVYVANDGSGS---NNVLKIDTATGNVTAT  246 (381)
T ss_pred             -ccc-------ccccccCCCCceEEECCCCCEEEEEeccCCC---ceEEEEeCCCceEEEe
Confidence             000       0011122255788999999988886555543   4588888888776643

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.34  E-value=1.9  Score=45.20  Aligned_cols=58  Identities=19%  Similarity=0.335  Sum_probs=43.1

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc----ccCCCCeeEEEECCCCCEEEE
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW----SSTSGFVTGATWDPEGRMILL  294 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~v~~v~~spdg~~l~~  294 (427)
                      ...++++|+|.|+.+++|-..|++..|...-.....+    ......|.+|+|-..-.++++
T Consensus       199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             cceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            3678999999999999999999999987543321111    123678999999887777665

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=94.30  E-value=5.1  Score=38.20  Aligned_cols=63  Identities=13%  Similarity=0.075  Sum_probs=44.7

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCC--cceeeccCCcCCeeEEEEcc----CCCceEEEecCCeEEEEecc
Q 014302          111 KHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRP----NGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       111 g~~lat~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~v~~l~~sp----~~~~~la~g~~~~i~iw~~~  173 (427)
                      ...|++|+..|.++||+......  ....+......+|..++.-.    .....||+=.-..+.||.+.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~  105 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVS  105 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEE
Confidence            35899999999999998755422  23455556677888888653    23357777666888888885

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.23  E-value=5  Score=37.83  Aligned_cols=65  Identities=12%  Similarity=0.096  Sum_probs=35.0

Q ss_pred             ceeeeEEcCCCCEEEEEe-----------CCC-eEEEEEccCC-CCc-ceeeccCCcCCeeEEEEccCCCceEEEecCCe
Q 014302          101 DLQGVSWHQHKHIVAFIS-----------GST-QVIVRDYEDS-GKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG  166 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~-----------~d~-~v~vwd~~~~-~~~-~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~  166 (427)
                      ....|+|.++|+++++-.           ..+ .|.+++-... +.. ..............++|.+++  ++++. ...
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~-~~~   91 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT-PPD   91 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC-CCe
Confidence            457899999999776642           122 6666543222 111 112222223356889999887  44443 333


Q ss_pred             EE
Q 014302          167 IC  168 (427)
Q Consensus       167 i~  168 (427)
                      |.
T Consensus        92 i~   93 (367)
T TIGR02604        92 IL   93 (367)
T ss_pred             EE
Confidence            44

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=94.12  E-value=4.7  Score=37.14  Aligned_cols=153  Identities=15%  Similarity=0.118  Sum_probs=87.4

Q ss_pred             eeeeEEcCC----CCEEEEEeC---------C-CeEEEEEccCC----CCcceeeccCCcCCeeEEEEccCCCceEEEec
Q 014302          102 LQGVSWHQH----KHIVAFISG---------S-TQVIVRDYEDS----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC  163 (427)
Q Consensus       102 V~~l~~sp~----g~~lat~~~---------d-~~v~vwd~~~~----~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~  163 (427)
                      +..+.+..+    ..+|++|+.         . |.+.++++...    ..-.........++|++++-- ++ + |+++.
T Consensus        29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~-lv~~~  105 (321)
T PF03178_consen   29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-R-LVVAV  105 (321)
T ss_dssp             EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-E-EEEEE
T ss_pred             EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-E-EEEee
Confidence            344455543    458888743         2 88999998873    111122223457789888766 33 4 66666


Q ss_pred             CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEE
Q 014302          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILK  243 (427)
Q Consensus       164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~  243 (427)
                      .+.+.+|++...                       .             .+...++               +...+..++
T Consensus       106 g~~l~v~~l~~~-----------------------~-------------~l~~~~~---------------~~~~~~i~s  134 (321)
T PF03178_consen  106 GNKLYVYDLDNS-----------------------K-------------TLLKKAF---------------YDSPFYITS  134 (321)
T ss_dssp             TTEEEEEEEETT-----------------------S-------------SEEEEEE---------------E-BSSSEEE
T ss_pred             cCEEEEEEccCc-----------------------c-------------cchhhhe---------------ecceEEEEE
Confidence            788999999710                       1             0111111               111223334


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCC--ccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWT--SEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~--~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      ....+.++++|.....+.++..+...  .....  .....+.++.+-++++.++ ++...+.+..+....
T Consensus       135 l~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i-~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  135 LSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTII-VGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEE-EEETTSEEEEEEE-S
T ss_pred             EeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEE-EEcCCCeEEEEEECC
Confidence            44446799999988888887655422  22111  3456688898887777555 456667888888764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.09  E-value=4.5  Score=36.76  Aligned_cols=157  Identities=18%  Similarity=0.308  Sum_probs=73.3

Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  314 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~  314 (427)
                      .+.+..+.-++||++++++.....+.-||--...-... ......|.++.|+|++...+.+ .++ .++.-+..+....+
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg-~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGG-QIQFSDDPDDGETW  221 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTT-EEEEEE-TTEEEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCc-EEEEccCCCCcccc
Confidence            35677788899999999887666666777432111111 1356789999999998877654 333 44443311111111


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEE
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  394 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (427)
                      ..+..+.       ...+-.+.+++|.+++...|+   ++.    |++ +.....++--...+.    +.....+...|.
T Consensus       222 ~~~~~~~-------~~~~~~~ld~a~~~~~~~wa~---gg~----G~l-~~S~DgGktW~~~~~----~~~~~~n~~~i~  282 (302)
T PF14870_consen  222 SEPIIPI-------KTNGYGILDLAYRPPNEIWAV---GGS----GTL-LVSTDGGKTWQKDRV----GENVPSNLYRIV  282 (302)
T ss_dssp             ---B-TT-------SS--S-EEEEEESSSS-EEEE---EST----T-E-EEESSTTSS-EE-GG----GTTSSS---EEE
T ss_pred             ccccCCc-------ccCceeeEEEEecCCCCEEEE---eCC----ccE-EEeCCCCccceECcc----ccCCCCceEEEE
Confidence            1111111       112225899999999998888   443    223 333333433211111    112334566788


Q ss_pred             eccCCCCCceeEEEeeCceEEEE
Q 014302          395 FHDKFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       395 f~~~~~~g~~l~v~~~~g~i~~~  417 (427)
                      |.+.   ..-.++| .+|.|.-|
T Consensus       283 f~~~---~~gf~lG-~~G~ll~~  301 (302)
T PF14870_consen  283 FVNP---DKGFVLG-QDGVLLRY  301 (302)
T ss_dssp             EEET---TEEEEE--STTEEEEE
T ss_pred             EcCC---CceEEEC-CCcEEEEe
Confidence            8754   3446666 77776554

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=93.96  E-value=0.21  Score=30.14  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=25.8

Q ss_pred             CCeEEEEEccCCC---EEEEEecCCcEEEEEcCC
Q 014302          237 GGLSILKWSPTGD---YFFAAKFDGTFYLWETNT  267 (427)
Q Consensus       237 ~~v~~~~~sp~g~---~l~~~~~dg~v~iwd~~~  267 (427)
                      +.+.+++|||...   +|+.+-..+.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999997554   888888889999999995

It contains a characteristic DLL sequence motif.

>PRK10115 protease 2; Provisional

Probab=93.42  E-value=3.9  Score=42.12  Aligned_cols=114  Identities=9%  Similarity=0.068  Sum_probs=61.3

Q ss_pred             eEEEEEccCCCEEEEE-ecCC----cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc-----eeeeeeeC
Q 014302          239 LSILKWSPTGDYFFAA-KFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFA  308 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~-~~dg----~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~-----~i~~~~~~  308 (427)
                      +..+.|||||++|+.+ ..+|    .|++.|+.++...... ....-..++|++|++.|+++..+..     .++..++.
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence            4467789999988843 3333    4888898877532111 1111156999999998888765431     34444444


Q ss_pred             CCCCCccccccccccccceeecc-CCcee-EEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          309 SKPPSLDAHLLPVDLPDIVSLTG-SQGIE-KIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~-~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      +....  .         ...+.. ..... .+..+.|++++++......+   +.+.+|+.
T Consensus       208 t~~~~--d---------~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~---~~~~l~~~  254 (686)
T PRK10115        208 TPASQ--D---------ELVYEEKDDTFYVSLHKTTSKHYVVIHLASATT---SEVLLLDA  254 (686)
T ss_pred             CChhH--C---------eEEEeeCCCCEEEEEEEcCCCCEEEEEEECCcc---ccEEEEEC
Confidence            33100  0         000111 01122 22334588887765544444   45888874

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.40  E-value=11  Score=38.90  Aligned_cols=97  Identities=15%  Similarity=0.228  Sum_probs=57.0

Q ss_pred             CcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC
Q 014302          142 SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP  221 (427)
Q Consensus       142 ~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  221 (427)
                      ..-.|..|..||+| .+||..+..+|.|-.+...                        |-....++.. ...+.|-++.-
T Consensus        83 ~~f~v~~i~~n~~g-~~lal~G~~~v~V~~LP~r------------------------~g~~~~~~~g-~~~i~Crt~~v  136 (717)
T PF10168_consen   83 PLFEVHQISLNPTG-SLLALVGPRGVVVLELPRR------------------------WGKNGEFEDG-KKEINCRTVPV  136 (717)
T ss_pred             CceeEEEEEECCCC-CEEEEEcCCcEEEEEeccc------------------------cCccccccCC-CcceeEEEEEe
Confidence            34578999999999 6777666677777766410                        0000001111 22333333332


Q ss_pred             CCCCcccCceEEeccCCeEEEEEccC---CCEEEEEecCCcEEEEEcCCCC
Q 014302          222 DGRFPGLGTPIRRGFGGLSILKWSPT---GDYFFAAKFDGTFYLWETNTWT  269 (427)
Q Consensus       222 dg~~l~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~dg~v~iwd~~~~~  269 (427)
                      +..+...     .....|..+.|+|.   +..|++-+.|+++|+||+....
T Consensus       137 ~~~~~~~-----~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  137 DERFFTS-----NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             chhhccC-----CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            2222211     12345778889886   4788888889999999996443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.30  E-value=1.6  Score=43.69  Aligned_cols=70  Identities=17%  Similarity=0.265  Sum_probs=47.5

Q ss_pred             eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEc--cCCCceEEEecCCeEEEEecc
Q 014302          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWR--PNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~s--p~~~~~la~g~~~~i~iw~~~  173 (427)
                      +-+.-|.-++..++-+...++.|||......+. .......+.|.++.|.  |+++.+|++|..+.|.++.-.
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~-~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEY-EESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEE-eeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence            334445545544455556788999988772111 1112346789999997  788889999999999988653

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=92.81  E-value=8.1  Score=35.83  Aligned_cols=52  Identities=15%  Similarity=0.234  Sum_probs=32.7

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee----ccCCcCCeeEEEEccC
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL----TSDSQRDVKVLEWRPN  154 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~----~~~~~~~v~~l~~sp~  154 (427)
                      -++|+|.|||+++++ ...|.|++++-+.........    ..........++++|+
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccc
Confidence            478999999877665 569999997722221011111    1234567899999995

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=92.54  E-value=8  Score=35.14  Aligned_cols=165  Identities=15%  Similarity=0.305  Sum_probs=74.6

Q ss_pred             eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEE-EEeccCCCCccccccCcccccccccCCC
Q 014302          118 SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC-IWAPSYPGNAASVRSGAASFLGALSRGP  196 (427)
Q Consensus       118 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (427)
                      +..|.|  |.-...+..-......-...+..+.-++|| .+++++..+.+. -|+-.                       
T Consensus       121 ~~~G~i--y~T~DgG~tW~~~~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G-----------------------  174 (302)
T PF14870_consen  121 GDRGAI--YRTTDGGKTWQAVVSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPG-----------------------  174 (302)
T ss_dssp             ETT--E--EEESSTTSSEEEEE-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-----------------------
T ss_pred             cCCCcE--EEeCCCCCCeeEcccCCcceeEeEEECCCC-cEEEEECcccEEEEecCC-----------------------
Confidence            345554  434444333333334555778999999999 788888887654 56543                       


Q ss_pred             CcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcC----CCCc--
Q 014302          197 GTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN----TWTS--  270 (427)
Q Consensus       197 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~----~~~~--  270 (427)
                      ...|.+..                            +.....+..|.|+|++...+++ ..|.|+.=+..    +...  
T Consensus       175 ~~~w~~~~----------------------------r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~  225 (302)
T PF14870_consen  175 QTTWQPHN----------------------------RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPI  225 (302)
T ss_dssp             -SS-EEEE------------------------------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B
T ss_pred             CccceEEc----------------------------cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccccc
Confidence            11122211                            1123467788888887655544 67777776611    1111  


Q ss_pred             cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEE
Q 014302          271 EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV  349 (427)
Q Consensus       271 ~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~  349 (427)
                      .........+..++|.+++...++++++.    ++.-.+.-.+.+....        .....+....|.|..+.+-+|.
T Consensus       226 ~~~~~~~~~~ld~a~~~~~~~wa~gg~G~----l~~S~DgGktW~~~~~--------~~~~~~n~~~i~f~~~~~gf~l  292 (302)
T PF14870_consen  226 IPIKTNGYGILDLAYRPPNEIWAVGGSGT----LLVSTDGGKTWQKDRV--------GENVPSNLYRIVFVNPDKGFVL  292 (302)
T ss_dssp             -TTSS--S-EEEEEESSSS-EEEEESTT-----EEEESSTTSS-EE-GG--------GTTSSS---EEEEEETTEEEEE
T ss_pred             CCcccCceeeEEEEecCCCCEEEEeCCcc----EEEeCCCCccceECcc--------ccCCCCceEEEEEcCCCceEEE
Confidence            11113344589999999988888665443    3333332111111100        0011225678888766666666

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.51  E-value=0.4  Score=28.94  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=25.0

Q ss_pred             CCeeEEEEccCCC--ceEEEecC-CeEEEEecc
Q 014302          144 RDVKVLEWRPNGG--RSLSVGCK-GGICIWAPS  173 (427)
Q Consensus       144 ~~v~~l~~sp~~~--~~la~g~~-~~i~iw~~~  173 (427)
                      +.|+++.|||...  .+|+.+.+ +.+.|+|+.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            3689999998764  68888877 899999987

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.38  E-value=4.8  Score=41.34  Aligned_cols=79  Identities=16%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc--C--------ce-E--EEeeee--eeeCCCCCCCceeEEeccC
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR--T--------PL-I--SLSLIG--FIRGPGDNPKPVAFSFHDK  398 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~--~--------~~-~--~~~~~~--~~~~~~~~~~~~~~~f~~~  398 (427)
                      .|..+.++|+|++||..  |...     |.|-.+..  +        +. +  ...+.+  ++ ..........+.|||.
T Consensus        86 ~v~~i~~n~~g~~lal~--G~~~-----v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~-~~~~~~~i~qv~WhP~  157 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALV--GPRG-----VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF-TSNSSLEIKQVRWHPW  157 (717)
T ss_pred             eEEEEEECCCCCEEEEE--cCCc-----EEEEEeccccCccccccCCCcceeEEEEEechhhc-cCCCCceEEEEEEcCC
Confidence            78999999999999996  4432     66666632  1        10 1  011111  11 1122334668999999


Q ss_pred             CCCCceeEEEeeCceEEEEecc
Q 014302          399 FKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       399 ~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      ...+..|.|=++|+.|.+|++.
T Consensus       158 s~~~~~l~vLtsdn~lR~y~~~  179 (717)
T PF10168_consen  158 SESDSHLVVLTSDNTLRLYDIS  179 (717)
T ss_pred             CCCCCeEEEEecCCEEEEEecC
Confidence            8888999999999999999984

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=92.17  E-value=8.3  Score=34.47  Aligned_cols=60  Identities=13%  Similarity=0.123  Sum_probs=40.5

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       109 p~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      ..+++|+.|+.+| +.++++.... ......  +...|..+...|+- .+|.+=.++.+.+++++
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~-~~~~i~--~~~~I~ql~vl~~~-~~llvLsd~~l~~~~L~   64 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPS-KPTRIL--KLSSITQLSVLPEL-NLLLVLSDGQLYVYDLD   64 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCc-cceeEe--ecceEEEEEEeccc-CEEEEEcCCccEEEEch
Confidence            3578999999888 7888873331 122221  22349999999987 44444456899999886

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.13  E-value=11  Score=35.65  Aligned_cols=58  Identities=16%  Similarity=0.114  Sum_probs=33.2

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCe-eEEEEccCCCceEEEecCCeEEEEecc
Q 014302          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDV-KVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       111 g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v-~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      +..+.+++.++.+..+|..++  +. .........+ ..+..  ++..+++.+.++.+..+|..
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG--~~-~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~  123 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETG--KR-LWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAE  123 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCC--cE-eeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECC
Confidence            567778888889888887766  11 1111111111 12222  34356665666888888875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.97  E-value=2.1  Score=42.77  Aligned_cols=116  Identities=20%  Similarity=0.259  Sum_probs=65.4

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEEC--CCCCEEEEEEcCCceeeeeee--C---
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWD--PEGRMILLAFAGSLTLGSIHF--A---  308 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~s--pdg~~l~~~~~~~~~i~~~~~--~---  308 (427)
                      ...-+.-|.-++.-++.+....+.|||.+....+...  .....|.++.|.  |||+.+++.+-.. .+.++.-  .   
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~-~v~l~~Q~R~dy~  109 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH-HVLLYTQLRYDYT  109 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc-EEEEEEccchhhh
Confidence            3344445555554445555667999999887753222  457889999995  6888877665444 2222211  1   


Q ss_pred             CCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          309 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      +..+.+. ....+++.   ... .-+|.+..|-++|..++.+  |+      .+.|+|-
T Consensus       110 ~~~p~w~-~i~~i~i~---~~T-~h~Igds~Wl~~G~LvV~s--GN------qlfv~dk  155 (631)
T PF12234_consen  110 NKGPSWA-PIRKIDIS---SHT-PHPIGDSIWLKDGTLVVGS--GN------QLFVFDK  155 (631)
T ss_pred             cCCcccc-eeEEEEee---cCC-CCCccceeEecCCeEEEEe--CC------EEEEECC
Confidence            1111110 00001111   111 1278999999999888764  43      2888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.82  E-value=2.5  Score=40.53  Aligned_cols=69  Identities=10%  Similarity=0.082  Sum_probs=50.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      ...|.+-..+| +||+|+.+|.|||||--.  ........+...+|..+..+.+| ..|.+.++..+.+-++.
T Consensus       432 nFsc~aTT~sG-~IvvgS~~GdIRLYdri~--~~AKTAlPgLG~~I~hVdvtadG-Kwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  432 NFSCFATTESG-YIVVGSLKGDIRLYDRIG--RRAKTALPGLGDAIKHVDVTADG-KWILATCKTYLLLIDTL  500 (644)
T ss_pred             ccceeeecCCc-eEEEeecCCcEEeehhhh--hhhhhcccccCCceeeEEeeccC-cEEEEecccEEEEEEEe
Confidence            34444444344 889999999999998632  24555667788899999999999 56666677788877765

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.66  E-value=6.2  Score=37.29  Aligned_cols=144  Identities=14%  Similarity=0.115  Sum_probs=77.7

Q ss_pred             eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-ceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccc
Q 014302          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS  180 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~  180 (427)
                      +.+=|...++.|. +...|.+.=|.....+.. +........++|.++.||+|. ++||+-. ++.|.+.+.. +.++  
T Consensus        26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~-~d~~--  100 (657)
T KOG2377|consen   26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFI-PDNS--  100 (657)
T ss_pred             cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-ceEEEEecCceEEEEecC-CCch--
Confidence            3344443333333 333444555666655333 333334466799999999999 7887764 4888888764 1110  


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                                          ......+                        -+.....|..+.|+.+ .-+|.-+ +..+
T Consensus       101 --------------------~l~~~~~------------------------ck~k~~~IlGF~W~~s-~e~A~i~-~~G~  134 (657)
T KOG2377|consen  101 --------------------QLEYTQE------------------------CKTKNANILGFCWTSS-TEIAFIT-DQGI  134 (657)
T ss_pred             --------------------hhHHHHH------------------------hccCcceeEEEEEecC-eeEEEEe-cCCe
Confidence                                0000000                        0011223556666644 4444333 3335


Q ss_pred             EEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEc
Q 014302          261 YLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFA  297 (427)
Q Consensus       261 ~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~  297 (427)
                      .+|-....+.  .....+...|.-..|.++-+.++.+++
T Consensus       135 e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  135 EFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             EEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            5555443332  334477888888899998887666554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.66  E-value=7.6  Score=32.98  Aligned_cols=116  Identities=15%  Similarity=0.129  Sum_probs=68.8

Q ss_pred             CEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCc-----eeeeeeeCCCC----C----C
Q 014302          249 DYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASKP----P----S  313 (427)
Q Consensus       249 ~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~-----~i~~~~~~~~~----~----~  313 (427)
                      +.|+.+.....|.+|++....+....  ..-+.|..+.++..|.||++--....     .++.+.-|...    .    .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR  108 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR  108 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence            45555566788999999855543322  45588999999999999997544332     44555555532    1    1


Q ss_pred             ccccccccccc-------cceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          314 LDAHLLPVDLP-------DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       314 ~~~~~~~~~~~-------~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      +.||.......       +...+.....+.+++-.|-.--|++   |++    +++.||.++...
T Consensus       109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV---g~~----~~l~lf~l~~~~  166 (215)
T PF14761_consen  109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV---GCG----NKLVLFTLKYQT  166 (215)
T ss_pred             EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE---EcC----CEEEEEEEEEEE
Confidence            22332211111       1112234457888888875444555   343    459999986543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=91.27  E-value=14  Score=35.36  Aligned_cols=57  Identities=12%  Similarity=0.201  Sum_probs=40.7

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECCCCCEEE
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMIL  293 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~spdg~~l~  293 (427)
                      +++..++.||+|++||.-..+|.+.+....-.+....  .........+.|.-+...++
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l  275 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL  275 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE
Confidence            5789999999999999888889998887654443211  13345677888987654443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.24  E-value=0.67  Score=47.96  Aligned_cols=69  Identities=16%  Similarity=0.236  Sum_probs=48.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcC---CeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      +|++++|+.+|.+++.|-.+|.|.+||+..+  +.......|..   .|..+.|..++ ..+.++..++. +|.+.
T Consensus       132 ~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--k~l~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs-f~~lv  203 (1206)
T KOG2079|consen  132 PVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--KILKVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS-FWKLV  203 (1206)
T ss_pred             cceeeEecCCCceeccccCCCcEEEEEccCC--cceeeeeecCCccceEEEEEEeCCC-cEEEEccCCCc-eEEEE
Confidence            8999999999999999999999999999986  33333333333   34444455555 45556655443 67665

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.21  E-value=6.1  Score=38.13  Aligned_cols=54  Identities=13%  Similarity=0.194  Sum_probs=37.4

Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc------cc--cCCCCeeEEEECCCC
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP------WS--STSGFVTGATWDPEG  289 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~------~~--~~~~~v~~v~~spdg  289 (427)
                      ...-+.|+|.|||+.|++--..|.|++++........      ..  ........++++|+-
T Consensus        29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3467789999999877666546999999765443211      11  135778999999873

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.18  E-value=0.81  Score=47.42  Aligned_cols=73  Identities=12%  Similarity=0.114  Sum_probs=52.1

Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-cC---CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-ST---SGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~---~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      .++|++++|+.+|+.++.|-.+|.|.+||+...+..+.. .+   ...+..+.|..++..+++ +..+|..+...+..
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt-~D~~Gsf~~lv~nk  206 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLT-SDTGGSFWKLVFNK  206 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEE-ccCCCceEEEEech
Confidence            468999999999999999999999999999987764333 22   334555666666775654 45555555554443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=91.01  E-value=22  Score=37.15  Aligned_cols=84  Identities=12%  Similarity=0.146  Sum_probs=44.6

Q ss_pred             cCCceeEEEECCCCCEEEEEEecCC--------CcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCC
Q 014302          331 GSQGIEKIAWDASGERLAVSYKGGD--------DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG  402 (427)
Q Consensus       331 ~~~~i~~v~~sp~g~~La~~~~~~~--------d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g  402 (427)
                      .+.....+++.+....++++..-.+        ...-..++++|-++-+.+......  + .....+.+.+.|+.+  .+
T Consensus       713 l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~--~-~E~~~Si~s~~~~~d--~~  787 (1096)
T KOG1897|consen  713 LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFE--R-NETALSIISCKFTDD--PN  787 (1096)
T ss_pred             CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccc--c-cceeeeeeeeeecCC--Cc
Confidence            4456778888886666666443222        111234666666655444322111  0 011112334557765  25


Q ss_pred             ceeEEEee----------CceEEEEec
Q 014302          403 PLLSVCWS----------SGFCCTYPL  419 (427)
Q Consensus       403 ~~l~v~~~----------~g~i~~~~~  419 (427)
                      ..++||++          .|+|.+|.+
T Consensus       788 t~~vVGT~~v~Pde~ep~~GRIivfe~  814 (1096)
T KOG1897|consen  788 TYYVVGTGLVYPDENEPVNGRIIVFEF  814 (1096)
T ss_pred             eEEEEEEEeeccCCCCcccceEEEEEE
Confidence            67888875          688888765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.00  E-value=15  Score=37.67  Aligned_cols=73  Identities=11%  Similarity=0.057  Sum_probs=53.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      ++.+++.|.+-+.+|+|-.||.|..+.=+-.  ........+....+|+.+++..++...+.++....|.+|.+.
T Consensus       127 p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~  201 (933)
T KOG2114|consen  127 PASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS  201 (933)
T ss_pred             cceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec
Confidence            6889999999999999999999987532211  111222223456789999999999765666777889999886

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.74  E-value=0.87  Score=26.77  Aligned_cols=28  Identities=29%  Similarity=0.720  Sum_probs=19.9

Q ss_pred             cCCeEEEEEccCCCEEE-EEecC--CcEEEE
Q 014302          236 FGGLSILKWSPTGDYFF-AAKFD--GTFYLW  263 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~-~~~~d--g~v~iw  263 (427)
                      ........|||||++|+ ++..+  |...||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34566788999999988 66666  666666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=90.60  E-value=11  Score=32.73  Aligned_cols=63  Identities=14%  Similarity=0.181  Sum_probs=34.1

Q ss_pred             CCCEEEEEecCCcEEEEEcCCCCcccc--ccC---CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          247 TGDYFFAAKFDGTFYLWETNTWTSEPW--SST---SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       247 ~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~---~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      .+..+++++.++.++.+|..+++..-.  ...   ...........++..++++.. .+.+..++..+.
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG  142 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTG  142 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTT
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCC
Confidence            455666666788899999888876322  111   111122222223666666544 446777776654

...

>PRK10115 protease 2; Provisional

Probab=90.45  E-value=24  Score=36.50  Aligned_cols=60  Identities=15%  Similarity=0.147  Sum_probs=38.1

Q ss_pred             ceeeeEEcCCCCEEEEEeC-----CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC
Q 014302          101 DLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK  164 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~  164 (427)
                      .+..+.|||||++||.+..     ...+++.|+.++  ..........  -..++|++|++.++.+..+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg--~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~  192 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG--NWYPELLDNV--EPSFVWANDSWTFYYVRKH  192 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC--CCCCccccCc--ceEEEEeeCCCEEEEEEec
Confidence            6788899999999988733     235777777655  2111111111  1469999999767666543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=90.16  E-value=1.2  Score=37.85  Aligned_cols=60  Identities=17%  Similarity=0.165  Sum_probs=33.6

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC--ceEEEe-cCCeEEEEecc
Q 014302          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVG-CKGGICIWAPS  173 (427)
Q Consensus       111 g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g-~~~~i~iw~~~  173 (427)
                      +.-|++|+.+|.|.+|.+...+...-.. ..-...|.+. + |.+.  .+..++ .++.|+.|++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-~s~~e~i~~~-I-p~~~~~~~~c~~~~dg~ir~~n~~  132 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-CSGEESIDLG-I-PNGRDSSLGCVGAQDGRIRACNIK  132 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhh-hcccccceec-c-ccccccceeEEeccCCceeeeccc
Confidence            4478899999999999887442111111 1112222222 1 2322  355555 45889999887

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.14  E-value=0.075  Score=49.90  Aligned_cols=137  Identities=20%  Similarity=0.235  Sum_probs=94.1

Q ss_pred             eeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccc
Q 014302          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVR  182 (427)
Q Consensus       104 ~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~  182 (427)
                      ...|-|.+.-|+.++.+..+..||-..    .........+...+++|.-+++.++..+.. +.+.+|+++.        
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~ag----q~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~--------  106 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAG----QVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNS--------  106 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhc----ceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhh--------
Confidence            346888887788888888888876432    233333455667889999888666555544 8899999971        


Q ss_pred             cCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEE
Q 014302          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYL  262 (427)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~i  262 (427)
                       .                 ..+.++..                         ....-.-+.|++....++.+...|.++|
T Consensus       107 -e-----------------ytqqLE~g-------------------------g~~s~sll~wsKg~~el~ig~~~gn~vi  143 (615)
T KOG2247|consen  107 -E-----------------YTQQLESG-------------------------GTSSKSLLAWSKGTPELVIGNNAGNIVI  143 (615)
T ss_pred             -h-----------------hHHHHhcc-------------------------CcchHHHHhhccCCccccccccccceEE
Confidence             0                 11112211                         0001112568888888888888999999


Q ss_pred             EEcCCCCcccccc-CCCCeeEEEECCCCCEEEEE
Q 014302          263 WETNTWTSEPWSS-TSGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       263 wd~~~~~~~~~~~-~~~~v~~v~~spdg~~l~~~  295 (427)
                      ++..+.+.....+ |...+.+++|.+.+..+.+.
T Consensus       144 ynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d  177 (615)
T KOG2247|consen  144 YNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD  177 (615)
T ss_pred             EeccchhhhhhhcccccceeEEEecccceeeecC
Confidence            9988777665555 99999999999988776643

>PRK13684 Ycf48-like protein; Provisional

Probab=90.14  E-value=14  Score=34.26  Aligned_cols=65  Identities=14%  Similarity=0.190  Sum_probs=39.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC  168 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~  168 (427)
                      .+.++.+.|++.+++++ ..|.+.. ..+.....-......-...++++.+.+++ .+++++..+.+.
T Consensus       174 ~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g-~~~~vg~~G~~~  238 (334)
T PRK13684        174 VVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDG-NLWMLARGGQIR  238 (334)
T ss_pred             eEEEEEECCCCeEEEEe-CCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCC-CEEEEecCCEEE
Confidence            68899999998877776 4555432 12222111122223345678999999998 677777666543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.93  E-value=14  Score=33.03  Aligned_cols=107  Identities=16%  Similarity=0.226  Sum_probs=65.8

Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCccccc----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC-CCCcccc
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK-PPSLDAH  317 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~-~~~~~~~  317 (427)
                      .|.-.|++..++..|.-+-++|+...+...+.    ........++.|  |++-..+..++ -+.++++.+. .+.+.++
T Consensus       133 gv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~-GL~ivDVSnp~sPvli~~  209 (370)
T COG5276         133 GVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDG-GLTIVDVSNPHSPVLIGS  209 (370)
T ss_pred             EEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCC-CeEEEEccCCCCCeEEEE
Confidence            35557889888887777888899877664433    333334566666  55554444444 6777888775 2333332


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      ..           -+..+.++..+++-.++++   .++.     +.+-|.....
T Consensus       210 ~n-----------~g~g~~sv~vsdnr~y~vv---y~eg-----vlivd~s~~s  244 (370)
T COG5276         210 YN-----------TGPGTYSVSVSDNRAYLVV---YDEG-----VLIVDVSGPS  244 (370)
T ss_pred             Ee-----------cCCceEEEEecCCeeEEEE---cccc-----eEEEecCCCC
Confidence            22           1226788888888888877   3332     6666665443

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=89.86  E-value=25  Score=35.91  Aligned_cols=157  Identities=14%  Similarity=0.176  Sum_probs=79.2

Q ss_pred             eEEEEEccCCCEEEEEecC----CcEEEEEcCCCCcccc-ccCCCCeeEEEECCCCCEEEEEEcCCc-eeeeeeeCCCCC
Q 014302          239 LSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPW-SSTSGFVTGATWDPEGRMILLAFAGSL-TLGSIHFASKPP  312 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~~~~-~~~~~~v~~v~~spdg~~l~~~~~~~~-~i~~~~~~~~~~  312 (427)
                      -..+.|-.|..+.+++...    ..+|+|.- .++.... ....+.-..+.|-|.|+.+++-..++. .--.+.+.....
T Consensus       204 k~~i~wrgD~~y~~v~r~Ee~prra~rvysr-eg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG  282 (1243)
T COG5290         204 KKIIFWRGDTEYNLVGRSEERPRRAFRVYSR-EGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG  282 (1243)
T ss_pred             ceEEEEccCcceeeecchhcccccceeeecc-ccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCC
Confidence            3456788888888866533    33677652 2222211 133344456899999999987654331 111122222211


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  392 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (427)
                      --.|... .      .......+..++|+-....||++  -+     ..|.+|-..+-.++...   -++.++    ..-
T Consensus       283 LrHGef~-l------r~~~dEk~~~~~wn~~s~vlav~--~~-----n~~~lwttkNyhWYLK~---e~~ip~----~s~  341 (1243)
T COG5290         283 LRHGEFD-L------RVGCDEKAFLENWNLLSTVLAVA--EG-----NLLKLWTTKNYHWYLKV---ERQIPG----ISY  341 (1243)
T ss_pred             cccCCcc-c------cCCchhhhhhhhhhHHHHHHHHh--hc-----ceEEEEEccceEEEEEE---eecCCC----cce
Confidence            1111110 0      00111245778898888888873  22     34999998776654222   111222    224


Q ss_pred             EEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          393 FSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       393 ~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      +.|||.-.  ..|.+. ..++|....|-
T Consensus       342 vkwhpe~~--nTl~f~-d~~~I~~V~f~  366 (1243)
T COG5290         342 VKWHPEEK--NTLLFR-DGERILRVFFS  366 (1243)
T ss_pred             eeeccccC--cEEEEe-cCCeEEEEEee
Confidence            67888632  223332 34455544443

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.84  E-value=1.1  Score=26.25  Aligned_cols=25  Identities=20%  Similarity=0.530  Sum_probs=18.8

Q ss_pred             cCCCCeeEEEECCCCCEEEEEEcCC
Q 014302          275 STSGFVTGATWDPEGRMILLAFAGS  299 (427)
Q Consensus       275 ~~~~~v~~v~~spdg~~l~~~~~~~  299 (427)
                      ..........|||||+.|++++...
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~   30 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRN   30 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred             cCCccccCEEEecCCCEEEEEecCC
Confidence            3445678899999999999988665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.67  E-value=4  Score=37.82  Aligned_cols=110  Identities=14%  Similarity=0.257  Sum_probs=54.8

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-------cccCCCCeeEEEECCC---CCEEEEEEcCC--------
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-------WSSTSGFVTGATWDPE---GRMILLAFAGS--------  299 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-------~~~~~~~v~~v~~spd---g~~l~~~~~~~--------  299 (427)
                      .-+.|+|.|||+.+++ ...|.|++++........       ..........++++|+   +.+|++.....        
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            3568999999877665 559999999932222111       1245567889999994   33443333311        


Q ss_pred             ceeeeeeeCCCCCCcccccccc-ccccceeeccCCceeEEEECCCCCEEEEE
Q 014302          300 LTLGSIHFASKPPSLDAHLLPV-DLPDIVSLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       300 ~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                      ..+..+.+......+......+ ..+......|  .-..|+|.|||.++++.
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H--~g~~l~fgpDG~LYvs~  131 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNH--NGGGLAFGPDGKLYVSV  131 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS---EEEEEE-TTSEEEEEE
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCC--CCccccCCCCCcEEEEe
Confidence            2344444444311111111111 1111001111  45779999999665554

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.35  E-value=3.5  Score=38.83  Aligned_cols=162  Identities=13%  Similarity=0.140  Sum_probs=84.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC-Cc---CCee-EEEEccCCCceEEEecCCeEEEEec-cC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQ---RDVK-VLEWRPNGGRSLSVGCKGGICIWAP-SY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~-~~---~~v~-~l~~sp~~~~~la~g~~~~i~iw~~-~~  174 (427)
                      .|..+-..|||++|..-+. .++.|+++.....+...+... ..   ..|+ ++..-..|..+|+...||.|.-|-. ..
T Consensus       222 ~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~  300 (733)
T COG4590         222 DVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRR  300 (733)
T ss_pred             chHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeec
Confidence            6788889999998877654 678888887662222222221 11   1222 2222234545777777788887743 21


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                      ++.+                    .           ...+....+.|               ..+..+.-..+-+-+++-
T Consensus       301 ~~~p--------------------~-----------l~h~R~f~l~p---------------a~~~~l~pe~~rkgF~~l  334 (733)
T COG4590         301 DGQP--------------------H-----------LNHIRNFKLAP---------------AEVQFLLPETNRKGFYSL  334 (733)
T ss_pred             CCCC--------------------c-----------ceeeeccccCc---------------ccceeeccccccceEEEE
Confidence            1110                    0           11111111111               111111111122234455


Q ss_pred             ecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302          255 KFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  311 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~  311 (427)
                      +..|++.++.....+...+...-....-+++||++.+|++  .+.+.+....+.+..
T Consensus       335 ~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~--e~~gki~~~~l~Nr~  389 (733)
T COG4590         335 YRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS--EDQGKIRLAQLENRN  389 (733)
T ss_pred             cCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee--ecCCceEEEEecCCC
Confidence            5566666665443333222222335667889999999975  666677777777653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=89.21  E-value=2.9  Score=36.07  Aligned_cols=55  Identities=22%  Similarity=0.340  Sum_probs=40.6

Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCccc-------cc--------cCCCCeeEEEECCCCCEEEEEEcC
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSEP-------WS--------STSGFVTGATWDPEGRMILLAFAG  298 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-------~~--------~~~~~v~~v~~spdg~~l~~~~~~  298 (427)
                      +..++++|++-+.+|.+++||+.+.+...       ..        .....|..+.++.+|.-+++-+++
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng   87 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG   87 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            55678899999999999999999887521       11        245667888888888877765443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=88.95  E-value=4.8  Score=33.24  Aligned_cols=30  Identities=20%  Similarity=0.442  Sum_probs=23.1

Q ss_pred             CCeEEEEEccCC-----C-EEEEEecCCcEEEEEcC
Q 014302          237 GGLSILKWSPTG-----D-YFFAAKFDGTFYLWETN  266 (427)
Q Consensus       237 ~~v~~~~~sp~g-----~-~l~~~~~dg~v~iwd~~  266 (427)
                      ..+..++|||.|     + .|++-+.++.|.||.-.
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            378889999854     3 46688889999999754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.82  E-value=24  Score=34.24  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=25.0

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  270 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~  270 (427)
                      .|..+..++.|..++..+.+|.+.++=.+.+..
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~  137 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGK  137 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCc
Confidence            577788999999999777788877765444443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.59  E-value=3.6  Score=35.50  Aligned_cols=66  Identities=14%  Similarity=0.158  Sum_probs=46.8

Q ss_pred             EcCCCCEEEEEeCCCeEEEEEccCCCCcc-----eeecc-------CCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          107 WHQHKHIVAFISGSTQVIVRDYEDSGKDA-----CILTS-------DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       107 ~sp~g~~lat~~~d~~v~vwd~~~~~~~~-----~~~~~-------~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      +..++.+|++.+.+|.+++||+.......     ..+..       .....|..+..+.+| ..+++-.++....|+.+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEeCCCEEEeccc
Confidence            55678899999999999999998861110     01111       345678899999888 56666666777888876

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=87.65  E-value=23  Score=32.61  Aligned_cols=113  Identities=11%  Similarity=0.081  Sum_probs=61.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .|++++-- ++. |+++ .++.|.+|++.....-...........+.++...  + .++++| ...++.++..+..    
T Consensus        90 ~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~----  159 (321)
T PF03178_consen   90 PVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEE----  159 (321)
T ss_dssp             -EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETT----
T ss_pred             cceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEcc----
Confidence            57777644 444 5555 3579999999988411111112222356666555  4 344555 4488888766510    


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                                         . .           .+..++=+             .....++++.+-++++.++.+..+|.
T Consensus       160 -------------------~-~-----------~l~~va~d-------------~~~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  160 -------------------N-N-----------KLILVARD-------------YQPRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             -------------------T-E------------EEEEEEE-------------SS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             -------------------C-C-----------EEEEEEec-------------CCCccEEEEEEecCCcEEEEEcCCCe
Confidence                               0 0           00000000             01224667777766678889999999


Q ss_pred             EEEEEcCC
Q 014302          260 FYLWETNT  267 (427)
Q Consensus       260 v~iwd~~~  267 (427)
                      +.++....
T Consensus       196 l~~l~~~~  203 (321)
T PF03178_consen  196 LFVLRYNP  203 (321)
T ss_dssp             EEEEEE-S
T ss_pred             EEEEEECC
Confidence            99998763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=87.57  E-value=22  Score=32.45  Aligned_cols=155  Identities=17%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             EEccCCCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccc
Q 014302          243 KWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  321 (427)
Q Consensus       243 ~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  321 (427)
                      .|.++...|+ +--..+.|.-||..+++...+...............+..++  +..+  ++.++...... ...+..+.
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~--~~~g--~~~~~~~~~~~-~t~~~~~~  105 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIA--CEHG--VRLLDPDTGGK-ITLLAEPE  105 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEE--Eccc--cEEEeccCCce-eEEecccc
Confidence            4777777666 55567889999988776665554444434444455444443  3333  22333321100 00000000


Q ss_pred             ccccceeeccCCceeEEEECCCCCEEEEEEe-----cCCCcceeEEEEEEec-cCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302          322 DLPDIVSLTGSQGIEKIAWDASGERLAVSYK-----GGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       322 ~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~-----~~~d~~~g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f  395 (427)
                      +.      ......+.+...|+|.+.+....     -......|  .||.+. .+....+....       ...+..++|
T Consensus       106 ~~------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G--~lyr~~p~g~~~~l~~~~-------~~~~NGla~  170 (307)
T COG3386         106 DG------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTG--SLYRVDPDGGVVRLLDDD-------LTIPNGLAF  170 (307)
T ss_pred             CC------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcc--eEEEEcCCCCEEEeecCc-------EEecCceEE
Confidence            00      00125678889999998877433     11112224  444444 34433322211       122557889


Q ss_pred             ccCCCCCceeEEE-eeCceEEEEecc
Q 014302          396 HDKFKQGPLLSVC-WSSGFCCTYPLI  420 (427)
Q Consensus       396 ~~~~~~g~~l~v~-~~~g~i~~~~~~  420 (427)
                      .|+   ++.|-+. +..++|+-|++-
T Consensus       171 SpD---g~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         171 SPD---GKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             CCC---CCEEEEEeCCCCeEEEEecC
Confidence            887   5444444 344788887764

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.60  E-value=17  Score=35.24  Aligned_cols=96  Identities=17%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             CCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC
Q 014302          144 RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  223 (427)
Q Consensus       144 ~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  223 (427)
                      -.|..+..++.|..++.+|.+| +.|..+.+                        .|-....++.. ...|+|-.+.-+.
T Consensus       104 feV~~vl~s~~GS~VaL~G~~G-i~vMeLp~------------------------rwG~~s~~eDg-k~~v~CRt~~i~~  157 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKG-LMVMELPK------------------------RWGKNSEFEDG-KSTVNCRTTPVAE  157 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCe-eEEEEchh------------------------hcCccceecCC-CceEEEEeecccc
Confidence            3577888899995555555555 55544420                        00111112222 4456666655444


Q ss_pred             CCcccCceEEeccCCeEEEEEccCC---CEEEEEecCCcEEEEEcCCCCc
Q 014302          224 RFPGLGTPIRRGFGGLSILKWSPTG---DYFFAAKFDGTFYLWETNTWTS  270 (427)
Q Consensus       224 ~~l~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~dg~v~iwd~~~~~~  270 (427)
                      ++..+...+     .+..++|+|+.   ..|..-+.|..||+||+.....
T Consensus       158 ~~ftss~~l-----tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  158 RFFTSSTSL-----TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             eeeccCCce-----eeeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence            433322222     34567899987   4677777799999999976654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=86.03  E-value=32  Score=32.71  Aligned_cols=58  Identities=17%  Similarity=0.024  Sum_probs=30.5

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeE-EEEccCCCceEEEecCCeEEEEecc
Q 014302          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-LEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       111 g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~-l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      +..+..++.++.+..+|..++..   .........+.+ .... ++ .+++...++.+.-+|..
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~---~W~~~~~~~~~ssP~v~-~~-~v~v~~~~g~l~ald~~  178 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEV---AWQTKVAGEALSRPVVS-DG-LVLVHTSNGMLQALNES  178 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCC---cccccCCCceecCCEEE-CC-EEEEECCCCEEEEEEcc
Confidence            45666777888988888776621   111111122211 1111 33 55555556767767765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.81  E-value=44  Score=34.05  Aligned_cols=65  Identities=6%  Similarity=0.085  Sum_probs=41.8

Q ss_pred             eEEcCCCCEEEEEeCC----------CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          105 VSWHQHKHIVAFISGS----------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       105 l~~sp~g~~lat~~~d----------~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      ++..|-|--||+.-.+          -.|+|+++...  ....+...|. .+-.+.|+.+. .+|++..+|++++|++.
T Consensus        38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~--lL~~~~w~~~-~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~  112 (829)
T KOG2280|consen   38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQ--LLGRILWKHG-ELIGMGWSDDE-ELICVQKDGTVHVYGLL  112 (829)
T ss_pred             EEecccCCceEEEecccccccccccceeEEEEecccc--chHHHHhcCC-CeeeecccCCc-eEEEEeccceEEEeecc
Confidence            3444555555554333          34666665543  2323333444 78889999777 89999999999999985

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.26  E-value=8.6  Score=40.67  Aligned_cols=112  Identities=13%  Similarity=0.248  Sum_probs=57.5

Q ss_pred             CeEEEEEccCCCEEE--EEecCCcEEEEEcCCCCccccc------------cCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302          238 GLSILKWSPTGDYFF--AAKFDGTFYLWETNTWTSEPWS------------STSGFVTGATWDPEGRMILLAFAGSLTLG  303 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~--~~~~dg~v~iwd~~~~~~~~~~------------~~~~~v~~v~~spdg~~l~~~~~~~~~i~  303 (427)
                      .+..+...+|+...+  ..+.+-.|..||+++.....+.            .......++.|.|.=..-...+..+..|.
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            445555667776555  2333446899999875532211            12234456777774222111122222222


Q ss_pred             eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      +..+.....            ....+.....+++++|+|.|+.|++   |-+.   |++.-|.-
T Consensus       182 V~~~~~~~~------------~v~s~p~t~~~Tav~WSprGKQl~i---G~nn---Gt~vQy~P  227 (1405)
T KOG3630|consen  182 VKSTKQLAQ------------NVTSFPVTNSQTAVLWSPRGKQLFI---GRNN---GTEVQYEP  227 (1405)
T ss_pred             hhhhhhhhh------------hhcccCcccceeeEEeccccceeeE---ecCC---CeEEEeec
Confidence            222221100            0111222337899999999999998   4443   66777664

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.56  E-value=27  Score=30.64  Aligned_cols=110  Identities=10%  Similarity=0.044  Sum_probs=62.2

Q ss_pred             cCCC-EEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccc
Q 014302          246 PTGD-YFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP  324 (427)
Q Consensus       246 p~g~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  324 (427)
                      +|.+ +++.|+..+.+.-.|.++++..-..-....+.+-+.- -|.+++.++..+ .++.+.+........-..      
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g-~lYfl~~~tGs~~w~f~~------   91 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSG-GLYFLCVKTGSQIWNFVI------   91 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccC-cEEEEEecchhheeeeee------
Confidence            4444 5558888999998898888763222122223222221 366777776555 677776665421110000      


Q ss_pred             cceeeccCCce-eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          325 DIVSLTGSQGI-EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       325 ~~~~~~~~~~i-~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                             .+.| .....++++..+..   ++.|   ++.+..|.++..++-..
T Consensus        92 -------~~~vk~~a~~d~~~glIyc---gshd---~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   92 -------LETVKVRAQCDFDGGLIYC---GSHD---GNFYALDPKTYGCVYKS  131 (354)
T ss_pred             -------hhhhccceEEcCCCceEEE---ecCC---CcEEEecccccceEEec
Confidence                   0011 22345678888866   7887   45888888877665433

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=84.01  E-value=35  Score=31.50  Aligned_cols=111  Identities=16%  Similarity=0.247  Sum_probs=58.8

Q ss_pred             CeEEEEEccCCCEEEEEecC------CcEEEEEcCCCCc-cc------c---------ccCCCCeeEEEECCCCCEEEEE
Q 014302          238 GLSILKWSPTGDYFFAAKFD------GTFYLWETNTWTS-EP------W---------SSTSGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~d------g~v~iwd~~~~~~-~~------~---------~~~~~~v~~v~~spdg~~l~~~  295 (427)
                      ..-++++.++|.++++.-.+      -.|+.++.. ++. ..      +         ........+++++|||+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            34466676777777666555      667777755 322 11      1         1345678899999999977665


Q ss_pred             EcCC----c--e-------eeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEE
Q 014302          296 FAGS----L--T-------LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV  349 (427)
Q Consensus       296 ~~~~----~--~-------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~  349 (427)
                      ....    +  .       ++++.+...............+...........|..+.+-+++++|+.
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            5432    1  1       333333322100000000011110000013347899999999998776

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=83.43  E-value=28  Score=33.18  Aligned_cols=109  Identities=17%  Similarity=0.088  Sum_probs=51.1

Q ss_pred             CCcEEEEEcCCCCccccccC--C-CCeeEEEE--CCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce----
Q 014302          257 DGTFYLWETNTWTSEPWSST--S-GFVTGATW--DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV----  327 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~--~-~~v~~v~~--spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----  327 (427)
                      ..++.+||+.+.+..+....  . .....+.|  .|+..+=++++.-.+.|+.|.-.+. ..+... ..++++...    
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~-g~W~a~-kVi~ip~~~v~~~  298 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD-GEWAAE-KVIDIPAKKVEGW  298 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET-TEEEEE-EEEEE--EE--SS
T ss_pred             cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC-CCeeee-EEEECCCcccCcc
Confidence            35799999999887655522  2 23445555  4556665555555555655544221 111111 111111110    


Q ss_pred             ee--------ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          328 SL--------TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       328 ~~--------~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      .+        ....-|+++..|.|.++|.++.=..     |.|+.||+.....
T Consensus       299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~-----GdvrqYDISDP~~  346 (461)
T PF05694_consen  299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLH-----GDVRQYDISDPFN  346 (461)
T ss_dssp             ---GGGGGG-EE------EEE-TTS-EEEEEETTT-----TEEEEEE-SSTTS
T ss_pred             cccccccccccCCCceEeEEEccCCCEEEEEcccC-----CcEEEEecCCCCC
Confidence            00        1123589999999999999863333     5699999987443

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=83.32  E-value=39  Score=31.39  Aligned_cols=109  Identities=13%  Similarity=0.167  Sum_probs=54.5

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc---cccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  312 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~  312 (427)
                      .++.+.+.++++.++++. .|.+++=....+..   ....  .....+.++.+.++++.++++ ..+ .+.  .-.+.-.
T Consensus       216 ~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G-~v~--~S~d~G~  290 (334)
T PRK13684        216 RLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNG-TLL--VSKDGGK  290 (334)
T ss_pred             cceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCC-eEE--EeCCCCC
Confidence            566777888887666654 56554322222221   1111  123457889999988876654 333 222  1122111


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                      ++.....+.        ........+.|..+++.+|+   |..    |.|.-|+
T Consensus       291 tW~~~~~~~--------~~~~~~~~~~~~~~~~~~~~---G~~----G~il~~~  329 (334)
T PRK13684        291 TWEKDPVGE--------EVPSNFYKIVFLDPEKGFVL---GQR----GVLLRYV  329 (334)
T ss_pred             CCeECCcCC--------CCCcceEEEEEeCCCceEEE---CCC----ceEEEec
Confidence            111000000        00124677888777788877   554    5666554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.02  E-value=3.2  Score=24.58  Aligned_cols=26  Identities=19%  Similarity=0.224  Sum_probs=19.2

Q ss_pred             cCCCEEEEEe-cCCcEEEEEcCCCCcc
Q 014302          246 PTGDYFFAAK-FDGTFYLWETNTWTSE  271 (427)
Q Consensus       246 p~g~~l~~~~-~dg~v~iwd~~~~~~~  271 (427)
                      |++++|+++. .++.|.++|..+.+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~   27 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVI   27 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence            6788888544 5788999998766553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=82.63  E-value=9  Score=36.50  Aligned_cols=78  Identities=19%  Similarity=0.266  Sum_probs=45.0

Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEE---EEecc----CceEEEeeeeeeeCCC-CCCC-ceeEEeccCC-----CC
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAI---YDARR----TPLISLSLIGFIRGPG-DNPK-PVAFSFHDKF-----KQ  401 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~v---wd~~~----~~~~~~~~~~~~~~~~-~~~~-~~~~~f~~~~-----~~  401 (427)
                      ..++.+|+++.||+   +..+   ..+.+   |+...    ...+.+...|.+.... +..+ ..|+.+....     .+
T Consensus         5 ~~isls~~~d~lai---A~~~---r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~d   78 (415)
T PF14655_consen    5 CSISLSPDGDLLAI---ARGQ---RLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPD   78 (415)
T ss_pred             ceEEecCCCCEEEE---EcCC---EEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCC
Confidence            35678899999999   4433   22333   54311    2345555566655432 2222 2333332111     23


Q ss_pred             CceeEEEeeCceEEEEec
Q 014302          402 GPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       402 g~~l~v~~~~g~i~~~~~  419 (427)
                      ..+++||+++|.+.||+.
T Consensus        79 w~~I~VG~ssG~vrfyte   96 (415)
T PF14655_consen   79 WTCIAVGTSSGYVRFYTE   96 (415)
T ss_pred             cEEEEEEecccEEEEEec
Confidence            468999999999999985

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=82.57  E-value=44  Score=31.48  Aligned_cols=122  Identities=20%  Similarity=0.146  Sum_probs=61.0

Q ss_pred             CeEEEEE--cc-CCCE-EEEEecCCcEEEEEcCCCCc-------cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          238 GLSILKW--SP-TGDY-FFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       238 ~v~~~~~--sp-~g~~-l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                      .++.+|+  +| +|++ +++...+|.+..|.+.....       .+.......+..+.......+|+++ .++.-||.+.
T Consensus       157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvg-EE~~GIW~y~  235 (381)
T PF02333_consen  157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVG-EEDVGIWRYD  235 (381)
T ss_dssp             SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEE-ETTTEEEEEE
T ss_pred             cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEe-cCccEEEEEe
Confidence            4555554  43 4654 44788899998888753221       1111445578888888777788775 4443455444


Q ss_pred             eCCCCCCccccccccccccceeeccCCceeEEEEC--CCC-CEEEEEEecCCCcceeEEEEEEeccC
Q 014302          307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD--ASG-ERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s--p~g-~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      ....... .+.....    .........|..|+.-  .+| .||++++.|.     ++..||+.+..
T Consensus       236 Aep~~~~-~~~~v~~----~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~-----~sf~Vy~r~~~  292 (381)
T PF02333_consen  236 AEPEGGN-DRTLVAS----ADGDGLVADVEGLALYYGSDGKGYLIVSSQGD-----NSFAVYDREGP  292 (381)
T ss_dssp             SSCCC-S---EEEEE----BSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGG-----TEEEEEESSTT
T ss_pred             cCCCCCC-cceeeec----ccccccccCccceEEEecCCCCeEEEEEcCCC-----CeEEEEecCCC
Confidence            3322111 1111100    0000012356677663  444 4777766555     45999998753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=82.24  E-value=31  Score=29.46  Aligned_cols=50  Identities=16%  Similarity=0.134  Sum_probs=33.3

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe
Q 014302          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG  162 (427)
Q Consensus       112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g  162 (427)
                      +.|..+.....|.+|++.....+. .....--+.|..+.++..|+++++.=
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~-~~~F~Tv~~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPL-LCTFSTVGRVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCce-eEEEcchhheeEEEeccccceEEEEE
Confidence            445444667889999999543333 33344457899999999995555543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=81.93  E-value=46  Score=31.33  Aligned_cols=60  Identities=17%  Similarity=0.343  Sum_probs=31.6

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCC--C-cceeeccC-------CcCCeeEEEEccCCCceEEEec
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSG--K-DACILTSD-------SQRDVKVLEWRPNGGRSLSVGC  163 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~--~-~~~~~~~~-------~~~~v~~l~~sp~~~~~la~g~  163 (427)
                      .+.|++.++| +++ +......++.+.+...  . ....+..+       +......++|.|||..+++.|.
T Consensus        74 p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~  143 (367)
T TIGR02604        74 VTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN  143 (367)
T ss_pred             ccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence            4778899999 444 4344333343443321  0 11111111       1344778999999954455554

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=81.59  E-value=34  Score=29.59  Aligned_cols=88  Identities=14%  Similarity=0.292  Sum_probs=49.2

Q ss_pred             CeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcc
Q 014302          279 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY  358 (427)
Q Consensus       279 ~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~  358 (427)
                      --..++|+.+.+.+.+..+.+-.+..|+.......+.......++...... .+...-.++.+.+|.+.++++.+     
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~-e~~~PDGm~ID~eG~L~Va~~ng-----  232 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF-ESLEPDGMTIDTEGNLYVATFNG-----  232 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc-CCCCCCcceEccCCcEEEEEecC-----
Confidence            345788998888888766555344334422221111111111122221111 11133456678889988888877     


Q ss_pred             eeEEEEEEeccCceE
Q 014302          359 KGLIAIYDARRTPLI  373 (427)
Q Consensus       359 ~g~i~vwd~~~~~~~  373 (427)
                       ++|.-.|..+++++
T Consensus       233 -~~V~~~dp~tGK~L  246 (310)
T KOG4499|consen  233 -GTVQKVDPTTGKIL  246 (310)
T ss_pred             -cEEEEECCCCCcEE
Confidence             45999999998875

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=81.51  E-value=35  Score=34.88  Aligned_cols=75  Identities=8%  Similarity=0.066  Sum_probs=48.0

Q ss_pred             CCCceeeeEEcC--CCCEEEEEeCCCeEEEEEccCC----------CCc-------ceeeccCCcCCeeEEEEc--cCCC
Q 014302           98 PEVDLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDS----------GKD-------ACILTSDSQRDVKVLEWR--PNGG  156 (427)
Q Consensus        98 ~~~~V~~l~~sp--~g~~lat~~~d~~v~vwd~~~~----------~~~-------~~~~~~~~~~~v~~l~~s--p~~~  156 (427)
                      ..|.|+-|...-  +...|+.+..||.|.+|..+.-          ...       .+.........+++++++  ... 
T Consensus        99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~-  177 (717)
T PF08728_consen   99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKS-  177 (717)
T ss_pred             CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcc-
Confidence            345666666544  3458899999999999976321          000       011222244578888887  555 


Q ss_pred             ceEEEecC-CeEEEEecc
Q 014302          157 RSLSVGCK-GGICIWAPS  173 (427)
Q Consensus       157 ~~la~g~~-~~i~iw~~~  173 (427)
                      ++||++.. ..|.||-..
T Consensus       178 rlIAVSsNs~~VTVFaf~  195 (717)
T PF08728_consen  178 RLIAVSSNSQEVTVFAFA  195 (717)
T ss_pred             eEEEEecCCceEEEEEEe
Confidence            78888876 778887765

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=80.93  E-value=15  Score=35.56  Aligned_cols=69  Identities=10%  Similarity=0.230  Sum_probs=40.7

Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee-eeeeeCCCCCCCceeEEeccCC---CCCceeEEEe
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL-IGFIRGPGDNPKPVAFSFHDKF---KQGPLLSVCW  409 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~---~~g~~l~v~~  409 (427)
                      ..+.|+|.|||++|++- ..  .   |.|++++-.++....+.. ...+.... ....+.|++||+|   .....|=+.+
T Consensus        31 ~Pw~maflPDG~llVtE-R~--~---G~I~~v~~~~~~~~~~~~l~~v~~~~g-e~GLlglal~PdF~~~~~n~~lYvsy  103 (454)
T TIGR03606        31 KPWALLWGPDNQLWVTE-RA--T---GKILRVNPETGEVKVVFTLPEIVNDAQ-HNGLLGLALHPDFMQEKGNPYVYISY  103 (454)
T ss_pred             CceEEEEcCCCeEEEEE-ec--C---CEEEEEeCCCCceeeeecCCceeccCC-CCceeeEEECCCccccCCCcEEEEEE
Confidence            56899999999888773 21  1   568888765543221111 11222112 3457899999999   5444444544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=80.76  E-value=41  Score=29.95  Aligned_cols=115  Identities=12%  Similarity=0.132  Sum_probs=59.8

Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc---------------cccCCCCeeEEE---ECCCCCEEEEEEcCCc
Q 014302          239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---------------WSSTSGFVTGAT---WDPEGRMILLAFAGSL  300 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~---------------~~~~~~~v~~v~---~spdg~~l~~~~~~~~  300 (427)
                      |..+..-|+-+.|++-+ |+.++++++.......               .......+..++   -...+..|+++...  
T Consensus        38 I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk--  114 (275)
T PF00780_consen   38 ITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK--  114 (275)
T ss_pred             EEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC--
Confidence            77777777777666554 5999999987665432               112333444444   22234455554433  


Q ss_pred             eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          301 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      .+.++........+.        .....+.....+.+++|.  ++.|++++  ..     ...+.|+.++...
T Consensus       115 ~i~i~~~~~~~~~f~--------~~~ke~~lp~~~~~i~~~--~~~i~v~~--~~-----~f~~idl~~~~~~  170 (275)
T PF00780_consen  115 KILIYEWNDPRNSFS--------KLLKEISLPDPPSSIAFL--GNKICVGT--SK-----GFYLIDLNTGSPS  170 (275)
T ss_pred             EEEEEEEECCccccc--------ceeEEEEcCCCcEEEEEe--CCEEEEEe--CC-----ceEEEecCCCCce
Confidence            444443333211110        112223333478888888  55666632  21     2667777655443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	427
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.98
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.98
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.98
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
2pm7_B	297	Protein transport protein SEC13, protein transport	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.96
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.96
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.96
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.95
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.95
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.95
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.95
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.94
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.94
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.94
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.93
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.93
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.92
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.92
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.92
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.91
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.91
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.91
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.91
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.91
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.9
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.9
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.9
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.89
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.89
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.89
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.89
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.88
3jro_A	753	Fusion protein of protein transport protein SEC13	99.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.86
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.85
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.84
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.8
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.79
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.79
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.79
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.77
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.77
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.77
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.77
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.76
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.73
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.73
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.73
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.73
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.73
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.68
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.67
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.62
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.62
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.59
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.59
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.58
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.57
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.55
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.51
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.51
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.49
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.46
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.45
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.43
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.41
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.4
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.39
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.38
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.37
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.37
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.32
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.3
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.29
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.28
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.26
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.26
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.24
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.24
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.22
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.22
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.22
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.2
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.17
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.14
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.14
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.14
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.14
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.12
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.11
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.07
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.06
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.05
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.03
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.97
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.94
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.92
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.9
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.9
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.89
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.88
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.87
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.86
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.86
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.85
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.77
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.76
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.73
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.63
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.62
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.61
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.59
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.55
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.54
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.51
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.48
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.42
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.41
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.33
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.33
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.32
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.2
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.19
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.14
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.13
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.05
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.01
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	97.98
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.94
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.82
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.79
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.68
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.62
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.55
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.55
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.51
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.43
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.37
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.37
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.34
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.28
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.27
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.25
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.23
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.16
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.99
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.99
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.97
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.92
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.9
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.89
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.85
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.85
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.82
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.82
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.78
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.77
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.73
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.64
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.63
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	96.46
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.46
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.44
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.4
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.38
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.3
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.27
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.19
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.15
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.06
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.06
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.04
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.04
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.01
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.0
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.99
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.78
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.7
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.67
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.62
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.03
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.74
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.71
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.56
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.45
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	93.92
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	93.44
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.11
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	93.0
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	92.88
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.68
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	92.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.62
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.39
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	92.14
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.12
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	90.6
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	90.47
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	90.12
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	90.05
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	89.93
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	87.79
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	87.29
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	87.24
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	85.14
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	81.74

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=260.59  Aligned_cols=266  Identities=13%  Similarity=0.156  Sum_probs=201.7

Q ss_pred             ceeeeEEcCC----CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~----g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      .|++++|+|+    +.+|++|+.|++|+||++............+|...|.+++|+|++..+++++.|+.|++||+.   
T Consensus        34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~---  110 (321)
T 3ow8_A           34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE---  110 (321)
T ss_dssp             CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT---
T ss_pred             cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC---
Confidence            8999999985    569999999999999999876322333457899999999999999444444566999999997   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCe
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGL  239 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v  239 (427)
                            ++                ..+..+..+ ...+.+++|+|+|++++.+.                 .+..+...+
T Consensus       111 ------~~----------------~~~~~~~~~-~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v  167 (321)
T 3ow8_A          111 ------NG----------------KQIKSIDAG-PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI  167 (321)
T ss_dssp             ------TT----------------EEEEEEECC-TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCE
T ss_pred             ------CC----------------CEEEEEeCC-CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceE
Confidence                  11                334444444 66788999999999866442                 123456779


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302          240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  318 (427)
Q Consensus       240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  318 (427)
                      .+++|+|+|++|++++.|+.|++||+++++.. .+..|...|.+++|+|++++|++++ .++.+++|++......     
T Consensus       168 ~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~i~iwd~~~~~~~-----  241 (321)
T 3ow8_A          168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGYIKIYDVQHANLA-----  241 (321)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSCEEEEETTTCCEE-----
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCeEEEEECCCccee-----
Confidence            99999999999999999999999999988764 4457899999999999999998765 5558888887654210     


Q ss_pred             cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  398 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  398 (427)
                             .....+...|.+++|+|++++|++   ++.|   ++|+|||+.++.++..     +.+..  ....+++|.|+
T Consensus       242 -------~~~~~h~~~v~~~~~sp~~~~l~s---~s~D---~~v~iwd~~~~~~~~~-----~~~h~--~~v~~v~~s~~  301 (321)
T 3ow8_A          242 -------GTLSGHASWVLNVAFCPDDTHFVS---SSSD---KSVKVWDVGTRTCVHT-----FFDHQ--DQVWGVKYNGN  301 (321)
T ss_dssp             -------EEECCCSSCEEEEEECTTSSEEEE---EETT---SCEEEEETTTTEEEEE-----ECCCS--SCEEEEEECTT
T ss_pred             -------EEEcCCCCceEEEEECCCCCEEEE---EeCC---CcEEEEeCCCCEEEEE-----EcCCC--CcEEEEEECCC
Confidence                   011123447999999999999998   5556   6699999998876532     22222  23668999886


Q ss_pred             CCCCceeEEEeeCceEEEEeccc
Q 014302          399 FKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       399 ~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                         +..|+.+..||.|.+|+..+
T Consensus       302 ---g~~l~s~~~d~~i~vwd~p~  321 (321)
T 3ow8_A          302 ---GSKIVSVGDDQEIHIYDCPI  321 (321)
T ss_dssp             ---SSEEEEEETTCCEEEEECC-
T ss_pred             ---CCEEEEEeCCCeEEEEeCCC
Confidence               77888888999999999753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.6e-33  Score=265.50  Aligned_cols=266  Identities=14%  Similarity=0.199  Sum_probs=208.8

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~  174 (427)
                      +.+|  .|++++|+|++++|++|+.|++|+|||+..+  .......+|...|++++|+|++..+++++.|+.|++||+. 
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~--~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-  180 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-  180 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-
Confidence            3455  8999999999999999999999999999887  4555667899999999999999544445566999999997 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccC
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFG  237 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~  237 (427)
                                              ...++..+..| ...|.+++|+|+|+++.++.                 .+..|..
T Consensus       181 ------------------------~~~~~~~~~~h-~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~  235 (410)
T 1vyh_C          181 ------------------------GFECIRTMHGH-DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE  235 (410)
T ss_dssp             ------------------------SSCEEECCCCC-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             ------------------------CCceeEEEcCC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc
Confidence                                    22345556666 78899999999998865432                 2455778


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCC--------------------CCEEEEEE
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPE--------------------GRMILLAF  296 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spd--------------------g~~l~~~~  296 (427)
                      .+.++.|+|++++|++++.|+.|++||+++.++. .+..|...|.+++|+|+                    |.+|++++
T Consensus       236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe
Confidence            8999999999999999999999999999988764 44589999999999997                    56787765


Q ss_pred             cCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          297 AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       297 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                       .++.+++|++......            .....+.+.|.+++|+|+|++|++   ++.|   ++|++||+.++.++.. 
T Consensus       316 -~D~~i~iwd~~~~~~~------------~~~~~h~~~v~~v~~~~~g~~l~s---~s~D---~~i~vwd~~~~~~~~~-  375 (410)
T 1vyh_C          316 -RDKTIKMWDVSTGMCL------------MTLVGHDNWVRGVLFHSGGKFILS---CADD---KTLRVWDYKNKRCMKT-  375 (410)
T ss_dssp             -TTSEEEEEETTTTEEE------------EEEECCSSCEEEEEECSSSSCEEE---EETT---TEEEEECCTTSCCCEE-
T ss_pred             -CCCeEEEEECCCCceE------------EEEECCCCcEEEEEEcCCCCEEEE---EeCC---CeEEEEECCCCceEEE-
Confidence             5558888887654210            111224458999999999999998   5666   7799999988776522 


Q ss_pred             eeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          377 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                          +.+...  ...+++|+|+   +..|+.|..||.|.+|++
T Consensus       376 ----~~~h~~--~v~~l~~~~~---~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          376 ----LNAHEH--FVTSLDFHKT---APYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ----EECCSS--CEEEEEECSS---SSCEEEEETTSEEEEEC-
T ss_pred             ----EcCCCC--cEEEEEEcCC---CCEEEEEeCCCcEEEEeC
Confidence                233322  3678999996   668999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.8e-32  Score=252.60  Aligned_cols=271  Identities=14%  Similarity=0.176  Sum_probs=204.4

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~  174 (427)
                      +.+|  .|++++|+|++++|++|+.|++|+|||+...  ........|...|.+++|+|++..+++++.++.+++|++..
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~  128 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC--CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence            4455  8999999999999999999999999998877  44555567888999999999995444455669999999871


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------cCc---eEEeccCC
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------LGT---PIRRGFGG  238 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------~~~---~~~~~~~~  238 (427)
                      ..                     ........+.+| ...|.++.|++++.++.             .+.   .+..|.+.
T Consensus       129 ~~---------------------~~~~~~~~~~~h-~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~  186 (340)
T 1got_B          129 RE---------------------GNVRVSRELAGH-TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD  186 (340)
T ss_dssp             CS---------------------BSCEEEEEEECC-SSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CC---------------------CcceeEEEecCC-CccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCc
Confidence            10                     112233345555 77888999988876532             121   23457889


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccc
Q 014302          239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  317 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~  317 (427)
                      |.+++|+|++++|++++.|+.|++||++++... .+..|...|.+++|+|++++|++++. ++.+++|++.......   
T Consensus       187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-d~~v~iwd~~~~~~~~---  262 (340)
T 1got_B          187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELM---  262 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEEE---
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC-CCcEEEEECCCCcEEE---
Confidence            999999999999999999999999999988764 45589999999999999999998754 4588888876542100   


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                      .       .........|.+++|+|+|++|++   ++.|   +.|++||+.++..+.     .+.+...  ...+++|.|
T Consensus       263 ~-------~~~~~~~~~v~~~~~s~~g~~l~~---g~~d---~~i~vwd~~~~~~~~-----~~~~h~~--~v~~~~~s~  322 (340)
T 1got_B          263 T-------YSHDNIICGITSVSFSKSGRLLLA---GYDD---FNCNVWDALKADRAG-----VLAGHDN--RVSCLGVTD  322 (340)
T ss_dssp             E-------ECCTTCCSCEEEEEECTTSSEEEE---EETT---SEEEEEETTTCCEEE-----EEECCSS--CEEEEEECT
T ss_pred             E-------EccCCcccceEEEEECCCCCEEEE---ECCC---CeEEEEEcccCcEee-----EeecCCC--cEEEEEEcC
Confidence            0       000011236899999999999999   5666   679999998876542     2333333  366899988


Q ss_pred             CCCCCceeEEEeeCceEEEEe
Q 014302          398 KFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       398 ~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      +   |..|+.|..||.|.+|+
T Consensus       323 d---g~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          323 D---GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             T---SSCEEEEETTSCEEEEC
T ss_pred             C---CCEEEEEcCCccEEecC
Confidence            6   77899999999999985

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=4.5e-32  Score=252.60  Aligned_cols=289  Identities=17%  Similarity=0.276  Sum_probs=204.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      .|.+++|+|+|++||+|+.|++|+||++...... ......+|...|.+++|+|++..+++++.|+.+++|++.      
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~------   91 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN------   91 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC------
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc------
Confidence            6899999999999999999999999999876221 123346799999999999999544444556999999987      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------------eEEeccCCe
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------------PIRRGFGGL  239 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------------~~~~~~~~v  239 (427)
                                       .....+...+.+| ...|.+++|+|+|++++++.                    .+..|...|
T Consensus        92 -----------------~~~~~~~~~~~~h-~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           92 -----------------QDDFECVTTLEGH-ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV  153 (345)
T ss_dssp             -----------------CC-EEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred             -----------------CCCeEEEEEccCC-CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence                             1133445556666 88999999999999866432                    123467889


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEEcCCCCc---cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cc
Q 014302          240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SL  314 (427)
Q Consensus       240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~  314 (427)
                      .+++|+|++++|++++.|+.|++||++..+.   ..+..|...|.+++|+|+|++|++++ .++.+++|+......  .+
T Consensus       154 ~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~iW~~~~~~~~~~~  232 (345)
T 3fm0_A          154 KHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVRIWRQYLPGNEQGV  232 (345)
T ss_dssp             EEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEEECTTCTTCC
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEEEeccccCCCCccc
Confidence            9999999999999999999999999987653   34458999999999999999999875 455888888654211  10


Q ss_pred             cccccccccccceee--ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE---EEeeeeeeeCCCCCCC
Q 014302          315 DAHLLPVDLPDIVSL--TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI---SLSLIGFIRGPGDNPK  389 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~--~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~  389 (427)
                      ..............+  .+...|.+++|+|++..||+   ++.|   +.|++|+.......   ......... ......
T Consensus       233 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s---~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~-~~h~~~  305 (345)
T 3fm0_A          233 ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALAT---ACGD---DAIRVFQEDPNSDPQQPTFSLTAHLH-QAHSQD  305 (345)
T ss_dssp             CCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEE---EETT---SCEEEEEECTTSCTTSCCEEEEEEET-TSSSSC
T ss_pred             eeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEE---EeCC---CeEEEEEeCCCCCcceeeEEEEeeec-ccccCc
Confidence            000000000000111  14558999999999999998   4555   56999998754311   001111111 112234


Q ss_pred             ceeEEeccCCCCCceeEEEeeCceEEEEeccccC
Q 014302          390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  423 (427)
Q Consensus       390 ~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~  423 (427)
                      ..+++|+|+  ...+|+.|..||.|.+|++--..
T Consensus       306 V~~v~~~p~--~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          306 VNCVAWNPK--EPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             EEEEEECSS--STTEEEEEETTSCEEEEEECC--
T ss_pred             EeEeEEeCC--CceEEEEcCCCCcEEEEEecCCC
Confidence            779999996  23589999999999999975443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1e-31  Score=245.61  Aligned_cols=257  Identities=13%  Similarity=0.160  Sum_probs=195.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++||+++.|++|+|||+...  ........|...|.+++|+|++..+++++.++.|++|++.       
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~-------   85 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-------   85 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-------
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCC--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC-------
Confidence            7999999999999999999999999999877  4555566788999999999999545555566999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc------------------eEEeccCCeEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT------------------PIRRGFGGLSIL  242 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------------~~~~~~~~v~~~  242 (427)
                        ++                ..+..+..| ...|.+++|+|++++++++.                  .+..|...|.++
T Consensus        86 --~~----------------~~~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v  146 (304)
T 2ynn_A           86 --TG----------------EKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (304)
T ss_dssp             --TC----------------CEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred             --CC----------------cEEEEEeCC-CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence              22                344456666 78899999999998865432                  134577889999


Q ss_pred             EEcc-CCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECC--CCCEEEEEEcCCceeeeeeeCCCCC--Ccc
Q 014302          243 KWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPP--SLD  315 (427)
Q Consensus       243 ~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~sp--dg~~l~~~~~~~~~i~~~~~~~~~~--~~~  315 (427)
                      +|+| ++..|++++.|++|++||+++.......  .+...+..++|+|  ++++|++++ .++.+++|++.....  .+.
T Consensus       147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s-~D~~i~iWd~~~~~~~~~~~  225 (304)
T 2ynn_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLE  225 (304)
T ss_dssp             EECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE-TTSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc-CCCeEEEEeCCCCccceeeC
Confidence            9999 6789999999999999999877653322  5667899999987  678888765 455888888776421  122


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  395 (427)
                      +              +...|..++|+|++++||+   ++.|   |+|++||++++++....     ...  .....+++|
T Consensus       226 ~--------------h~~~v~~~~~~p~~~~l~s---~s~D---g~i~iWd~~~~~~~~~~-----~~~--~~~~~~~~~  278 (304)
T 2ynn_A          226 G--------------HMSNVSFAVFHPTLPIIIS---GSED---GTLKIWNSSTYKVEKTL-----NVG--LERSWCIAT  278 (304)
T ss_dssp             C--------------CSSCEEEEEECSSSSEEEE---EETT---SCEEEEETTTCCEEEEE-----CCS--SSSEEEEEE
T ss_pred             C--------------CCCCEEEEEECCCCCEEEE---EcCC---CeEEEEECCCCceeeec-----cCC--CccEEEEEE
Confidence            2              3448999999999999998   5666   67999999988766332     221  223568999


Q ss_pred             ccCCCCCc-eeEEEeeCceEE
Q 014302          396 HDKFKQGP-LLSVCWSSGFCC  415 (427)
Q Consensus       396 ~~~~~~g~-~l~v~~~~g~i~  415 (427)
                      +|.  .+. .++.|+.+|.+.
T Consensus       279 ~~~--~~~~~~asg~~~g~~~  297 (304)
T 2ynn_A          279 HPT--GRKNYIASGFDNGFTV  297 (304)
T ss_dssp             CTT--CGGGCEEEEETTEEEE
T ss_pred             CCC--CCceEEEEecCCceEE
Confidence            886  233 588887666443

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.2e-32  Score=255.88  Aligned_cols=270  Identities=15%  Similarity=0.184  Sum_probs=193.5

Q ss_pred             CceeeeEEcCCCCEEEEEeC------CCeEEEEEccCCCC--cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEe
Q 014302          100 VDLQGVSWHQHKHIVAFISG------STQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~------d~~v~vwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~  171 (427)
                      ..|++++|||||++||+++.      |+.|++|+......  .......+|...|.+++|+|++ .+|+++.++.|+|||
T Consensus        43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~-~~l~~s~dg~v~lWd  121 (357)
T 4g56_B           43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEK-GILVASDSGAVELWE  121 (357)
T ss_dssp             SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTT-EEEEEETTSCEEEC-
T ss_pred             CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCC-CEEEEECCCEEEEee
Confidence            37999999999999999997      67899988766521  1223334588899999999998 788888889999999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEe
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRR  234 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~  234 (427)
                      +.....                      ..........+...|++++|+|+|++++++.                 .+..
T Consensus       122 ~~~~~~----------------------~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~  179 (357)
T 4g56_B          122 ILEKES----------------------LLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA  179 (357)
T ss_dssp             -----------------------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             ccccce----------------------eEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence            871110                      0000111112378899999999999866432                 1345


Q ss_pred             ccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCcccc---ccCCCCeeEEEECCCCC-EEEEEEcCCceeeeeeeCC
Q 014302          235 GFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPW---SSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       235 ~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~v~~spdg~-~l~~~~~~~~~i~~~~~~~  309 (427)
                      |...|.+++|+|++. ++++++.|+.|++||+++++....   ..+...+.+++|+|++. +|++ ++.++.+++|++..
T Consensus       180 h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~-g~~d~~i~~wd~~~  258 (357)
T 4g56_B          180 HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC-GDETGNVSLVNIKN  258 (357)
T ss_dssp             CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE-EESSSCEEEEESSC
T ss_pred             CCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE-eecccceeEEECCC
Confidence            788999999999986 677999999999999998876433   25777899999999865 5555 45666888888776


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCC
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP  388 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~  388 (427)
                      ....            .....+...|++++|+|++. +||+   ++.|   ++|+|||+++++++...      +..  .
T Consensus       259 ~~~~------------~~~~~~~~~v~~l~~sp~~~~~las---gs~D---~~i~iwd~~~~~~~~~~------~H~--~  312 (357)
T 4g56_B          259 PDSA------------QTSAVHSQNITGLAYSYHSSPFLAS---ISED---CTVAVLDADFSEVFRDL------SHR--D  312 (357)
T ss_dssp             GGGC------------EEECCCSSCEEEEEECSSSSCCEEE---EETT---SCEEEECTTSCEEEEEC------CCS--S
T ss_pred             CcEe------------EEEeccceeEEEEEEcCCCCCEEEE---EeCC---CEEEEEECCCCcEeEEC------CCC--C
Confidence            4210            01112344899999999984 6777   5666   66999999998776332      222  2


Q ss_pred             CceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          389 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       389 ~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      ...+++|+|.  ++.+|+.|..||.|.+|++.=
T Consensus       313 ~V~~vafsP~--d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          313 FVTGVAWSPL--DHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CEEEEEECSS--STTEEEEEETTSCEEEEECC-
T ss_pred             CEEEEEEeCC--CCCEEEEEcCCCeEEEEECCC
Confidence            3668999985  367888898999999999753

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.2e-32  Score=251.15  Aligned_cols=267  Identities=15%  Similarity=0.158  Sum_probs=190.3

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccC-----C----CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYED-----S----GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~-----~----~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw  170 (427)
                      ..|.+++|+|||++|++++ |+++++||...     .    ..........+...|.+++|+|++ .+++++.++.|+||
T Consensus        31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lW  108 (344)
T 4gqb_B           31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELW  108 (344)
T ss_dssp             SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEE
Confidence            3699999999999999887 77777776321     1    111122223466789999999997 77777778999999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEe-ehhcccCCCceeeeEeCCCCCCcccCc-----------------eE
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLV-DFLRSQNGEQITALSWGPDGRFPGLGT-----------------PI  232 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~  232 (427)
                      |+....                      ..... ..+.+| ...|++++|+|+|++++++.                 .+
T Consensus       109 d~~~~~----------------------~~~~~~~~~~~H-~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~  165 (344)
T 4gqb_B          109 ELDENE----------------------TLIVSKFCKYEH-DDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY  165 (344)
T ss_dssp             EECTTS----------------------SCEEEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             eccCCC----------------------ceeEeeccccCC-CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            997111                      11111 122344 78899999999999866442                 13


Q ss_pred             EeccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCcccc---ccCCCCeeEEEECCCCC-EEEEEEcCCceeeeeee
Q 014302          233 RRGFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSEPW---SSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHF  307 (427)
Q Consensus       233 ~~~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~v~~spdg~-~l~~~~~~~~~i~~~~~  307 (427)
                      ..|...|.+++|+|++. .|++++.|++|++||+++++....   ..+...+.+++|+|++. +|+++ +.++.+++|++
T Consensus       166 ~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg-~~dg~v~~wd~  244 (344)
T 4gqb_B          166 RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG-DENGTVSLVDT  244 (344)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE-ETTSEEEEEES
T ss_pred             cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe-ccCCcEEEEEC
Confidence            45889999999999986 677999999999999998887432   25667799999999655 55554 56668888888


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCC
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD  386 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~  386 (427)
                      ......            .....+...|++++|+|+|. +||+   ++.|   ++|+|||+++++++.+      .+...
T Consensus       245 ~~~~~~------------~~~~~h~~~v~~v~fsp~g~~~las---gs~D---~~i~vwd~~~~~~~~~------~~H~~  300 (344)
T 4gqb_B          245 KSTSCV------------LSSAVHSQCVTGLVFSPHSVPFLAS---LSED---CSLAVLDSSLSELFRS------QAHRD  300 (344)
T ss_dssp             CC--CC------------EEEECCSSCEEEEEECSSSSCCEEE---EETT---SCEEEECTTCCEEEEE------CCCSS
T ss_pred             CCCcEE------------EEEcCCCCCEEEEEEccCCCeEEEE---EeCC---CeEEEEECCCCcEEEE------cCCCC
Confidence            764221            11112345899999999984 6777   5666   6699999998876532      23222


Q ss_pred             CCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          387 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       387 ~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                        ...+++|+|+  ...+|+.|..||+|.+|.+-
T Consensus       301 --~V~~v~~sp~--~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          301 --FVRDATWSPL--NHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             --CEEEEEECSS--STTEEEEEETTSCEEEEECC
T ss_pred             --CEEEEEEeCC--CCeEEEEEcCCCeEEEEECC
Confidence              3678999996  34578888889999999874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.4e-31  Score=265.48  Aligned_cols=242  Identities=19%  Similarity=0.181  Sum_probs=177.2

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC----CeEEEE
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIW  170 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~----~~i~iw  170 (427)
                      +.+|  .|++++|+|+|++||+|+.|++|+|||+.............|...|.+++|+|++..+++++.+    +.|++|
T Consensus        55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~w  134 (611)
T 1nr0_A           55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF  134 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEe
Confidence            3444  7999999999999999999999999999765333344556789999999999999555555543    367788


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-cccCc-----------------eE
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-PGLGT-----------------PI  232 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-----------------~~  232 (427)
                      +..                           .....+.+| ...|.+++|+|++.. ++++.                 .+
T Consensus       135 d~~---------------------------~~~~~l~gh-~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l  186 (611)
T 1nr0_A          135 DTG---------------------------TSNGNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTF  186 (611)
T ss_dssp             TTC---------------------------CBCBCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEE
T ss_pred             eCC---------------------------CCcceecCC-CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeee
Confidence            754                           123345555 788999999999874 44321                 24


Q ss_pred             EeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--------cCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          233 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       233 ~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                      ..|...|.+++|+|+|++|++++.|++|++||+.+++.....        .|...|.+++|+|+|++|++++. ++.+++
T Consensus       187 ~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~-D~~v~l  265 (611)
T 1nr0_A          187 GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKI  265 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-TSEEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeC-CCeEEE
Confidence            458889999999999999999999999999999887753221        68999999999999999998754 558888


Q ss_pred             eeeCCCCC--Ccccc-------------------------cccccccc---ce-eeccCCceeEEEECCCCCEEEEEEec
Q 014302          305 IHFASKPP--SLDAH-------------------------LLPVDLPD---IV-SLTGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       305 ~~~~~~~~--~~~~~-------------------------~~~~~~~~---~~-~~~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      |++.....  .+..+                         ...++...   .. ...|...|.+++|+|+|++|++   +
T Consensus       266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s---~  342 (611)
T 1nr0_A          266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS---A  342 (611)
T ss_dssp             EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE---E
T ss_pred             EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEE---E
Confidence            88765321  11000                         00000000   01 1235568999999999999999   5


Q ss_pred             CCCcceeEEEEEEeccCceE
Q 014302          354 GDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~  373 (427)
                      +.|   ++|++||+.++.+.
T Consensus       343 s~D---~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          343 DAE---GHINSWDISTGISN  359 (611)
T ss_dssp             ETT---SCEEEEETTTCCEE
T ss_pred             eCC---CcEEEEECCCCcee
Confidence            556   66999999876543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=7.4e-31  Score=245.21  Aligned_cols=273  Identities=14%  Similarity=0.146  Sum_probs=201.7

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~  174 (427)
                      +.+|  .|++++|+|++++||+|+.|++|+|||....  ........|...|.+++|+|++..+++.+.++.+++|++..
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~  137 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT--NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF  137 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence            4455  7999999999999999999999999998776  34444456778899999999995444445569999999863


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC--------------c---eEEeccC
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG--------------T---PIRRGFG  237 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--------------~---~~~~~~~  237 (427)
                      .......                   .....+..| ...|.+++|+|++..+.++              .   .+..|..
T Consensus       138 ~~~~~~~-------------------~~~~~~~~h-~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~  197 (354)
T 2pbi_B          138 DKNENMA-------------------AKKKSVAMH-TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA  197 (354)
T ss_dssp             CTTCCSG-------------------GGCEEEEEC-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             ccccccc-------------------ccceeeecc-CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCC
Confidence            2111000                   111223344 7789999999998765433              1   2455788


Q ss_pred             CeEEEEEcc--CCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302          238 GLSILKWSP--TGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  314 (427)
Q Consensus       238 ~v~~~~~sp--~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~  314 (427)
                      .+.+++|+|  ++++|++++.||.|++||++++++. .+..|...|.+++|+|++++|++++. ++.+++|++...... 
T Consensus       198 ~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~-D~~v~lwd~~~~~~~-  275 (354)
T 2pbi_B          198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD-DATCRLYDLRADREV-  275 (354)
T ss_dssp             CEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEE-
T ss_pred             CeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcEE-
Confidence            899999987  5789999999999999999998874 44589999999999999999998754 458888887654110 


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEE
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  394 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (427)
                        ..       .........+.+++|+|+|++|++   ++.|   ++|+|||+.++..+.     .+.+..  ....+++
T Consensus       276 --~~-------~~~~~~~~~~~~~~~s~~g~~l~~---g~~d---~~i~vwd~~~~~~~~-----~l~~h~--~~v~~l~  333 (354)
T 2pbi_B          276 --AI-------YSKESIIFGASSVDFSLSGRLLFA---GYND---YTINVWDVLKGSRVS-----ILFGHE--NRVSTLR  333 (354)
T ss_dssp             --EE-------ECCTTCCSCEEEEEECTTSSEEEE---EETT---SCEEEEETTTCSEEE-----EECCCS--SCEEEEE
T ss_pred             --EE-------EcCCCcccceeEEEEeCCCCEEEE---EECC---CcEEEEECCCCceEE-----EEECCC--CcEEEEE
Confidence              00       000011226889999999999999   5555   569999998877652     222322  2366899


Q ss_pred             eccCCCCCceeEEEeeCceEEEEe
Q 014302          395 FHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       395 f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      |.|+   |..|++|..||.|.+|+
T Consensus       334 ~spd---g~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          334 VSPD---GTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ECTT---SSCEEEEETTSEEEEEC
T ss_pred             ECCC---CCEEEEEcCCCCEEecC
Confidence            9986   77899999999999984

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-30  Score=262.01  Aligned_cols=276  Identities=13%  Similarity=0.196  Sum_probs=204.7

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      ..+.+++|+|+|++||+++ +++|+||++...  .......+|...|++++|+|+| .+||+|+ ++.|+|||+..    
T Consensus        19 g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~--~~~~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~----   90 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQ----   90 (611)
T ss_dssp             TCCCCCEECTTSSEEEEEE-TTEEEEEETTCS--SCCEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSS----
T ss_pred             CceeEEeeCCCCCEEEeCC-CCEEEEecCCCc--ccCeEecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCC----
Confidence            3678999999999999997 569999999765  4555667899999999999999 6666664 59999999851    


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-------------------eEEeccCCe
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-------------------PIRRGFGGL  239 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-------------------~~~~~~~~v  239 (427)
                           +              .......+..| ...|.+++|+|||+.++.+.                   .+..|...|
T Consensus        91 -----~--------------~~~~~~~~~~~-~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v  150 (611)
T 1nr0_A           91 -----T--------------THILKTTIPVF-SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAM  150 (611)
T ss_dssp             -----T--------------TCCEEEEEECS-SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCE
T ss_pred             -----C--------------cceeeEeeccc-CCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCc
Confidence                 1              11122234444 77899999999999865321                   235688899


Q ss_pred             EEEEEccCCC-EEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccc
Q 014302          240 SILKWSPTGD-YFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  317 (427)
Q Consensus       240 ~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~  317 (427)
                      .+++|+|++. .|++++.|++|++||..+.+. ..+..|...|.+++|+|||++|++++. ++.+++|++.+.....  .
T Consensus       151 ~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~-D~~i~lwd~~~g~~~~--~  227 (611)
T 1nr0_A          151 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLYNGVDGTKTG--V  227 (611)
T ss_dssp             EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCEEE--E
T ss_pred             eEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC-CCcEEEEECCCCcEee--e
Confidence            9999999997 588999999999999887665 344589999999999999999998755 4588888876542100  0


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee------------------
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG------------------  379 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~------------------  379 (427)
                         ..........|.+.|.+++|+|+|++||+   ++.|   ++|+|||+.++.++...+.+                  
T Consensus       228 ---~~~~~~~~~~h~~~V~~v~~spdg~~l~s---~s~D---~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  298 (611)
T 1nr0_A          228 ---FEDDSLKNVAHSGSVFGLTWSPDGTKIAS---ASAD---KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV  298 (611)
T ss_dssp             ---CBCTTSSSCSSSSCEEEEEECTTSSEEEE---EETT---SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEE
T ss_pred             ---eccccccccccCCCEEEEEECCCCCEEEE---EeCC---CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEE
Confidence               00000111235568999999999999999   5566   77999999887654322110                  


Q ss_pred             --------------------eeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          380 --------------------FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       380 --------------------~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                                          .+.+  ......+++|.|+   |..|+.+..||.|.+|++.
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~g--h~~~v~~l~~spd---g~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRYG--HNKAITALSSSAD---GKTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECC--CSSCEEEEEECTT---SSEEEEEETTSCEEEEETT
T ss_pred             EEeCCCcEEEEeCCCCCcceEEcC--CCCCEEEEEEeCC---CCEEEEEeCCCcEEEEECC
Confidence                                1112  2234668899885   7889999999999999863

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-30  Score=239.35  Aligned_cols=272  Identities=13%  Similarity=0.167  Sum_probs=204.4

Q ss_pred             CCC--ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCCCC---cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEe
Q 014302           98 PEV--DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGK---DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (427)
Q Consensus        98 ~~~--~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~  171 (427)
                      .+|  .|++++|+|++ ++|++|+.|++|++|++.....   .......+|...|.+++|+|++..+++++.|++|++||
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            445  79999999976 7999999999999999875421   22345568999999999999995555555679999999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------------eEEec
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT----------------PIRRG  235 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------~~~~~  235 (427)
                      +.         ++                .....+..| ...|.+++|+|+++++.++.                .+..|
T Consensus        94 ~~---------~~----------------~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h  147 (319)
T 3frx_A           94 VA---------TG----------------ETYQRFVGH-KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGH  147 (319)
T ss_dssp             TT---------TT----------------EEEEEEECC-SSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCC
T ss_pred             CC---------CC----------------CeeEEEccC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence            97         22                345556666 78899999999998866442                13347


Q ss_pred             cCCeEEEEEccC------CCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302          236 FGGLSILKWSPT------GDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  308 (427)
Q Consensus       236 ~~~v~~~~~sp~------g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~  308 (427)
                      ...+.+++|+|.      +..|++++.|+.|++||+++.+.. .+..|...|.+++|+|+|++|++++. ++.+++|++.
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~-dg~i~iwd~~  226 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK-DGEIMLWNLA  226 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET-TCEEEEEETT
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECC
Confidence            788999999985      448999999999999999887763 44589999999999999999998754 4588888877


Q ss_pred             CCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeC--CCC
Q 014302          309 SKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG--PGD  386 (427)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~--~~~  386 (427)
                      ....             ...+.....|.+++|+|++.+|+++   ..    ..+++|++....++......+ .+  ...
T Consensus       227 ~~~~-------------~~~~~~~~~v~~~~~sp~~~~la~~---~~----~~i~v~~~~~~~~~~~~~~~~-~~~~~~~  285 (319)
T 3frx_A          227 AKKA-------------MYTLSAQDEVFSLAFSPNRYWLAAA---TA----TGIKVFSLDPQYLVDDLRPEF-AGYSKAA  285 (319)
T ss_dssp             TTEE-------------EEEEECCSCEEEEEECSSSSEEEEE---ET----TEEEEEEETTEEEEEEECCCC-TTCCGGG
T ss_pred             CCcE-------------EEEecCCCcEEEEEEcCCCCEEEEE---cC----CCcEEEEeCcCeeeeccCccc-cccccCc
Confidence            6421             1122234589999999999999985   22    239999998765543221111 01  011


Q ss_pred             CCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          387 NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       387 ~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      .....+++|.|+   |..|++|..||.|.+|++.
T Consensus       286 ~~~v~~~~~spd---g~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          286 EPHAVSLAWSAD---GQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             CCCEEEEEECTT---SSEEEEEETTSCEEEEEEE
T ss_pred             CcceeEEEECCC---CCEEEEeecCceEEEEEEe
Confidence            233668999986   8899999999999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.4e-30  Score=239.68  Aligned_cols=271  Identities=15%  Similarity=0.207  Sum_probs=197.5

Q ss_pred             ceeeeEE-----cC-CCCEEEEEeCCCeEEEEEccCCCC-----cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEE
Q 014302          101 DLQGVSW-----HQ-HKHIVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI  169 (427)
Q Consensus       101 ~V~~l~~-----sp-~g~~lat~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~i  169 (427)
                      .|++++|     ++ ++++||+|+.|++|+|||+.....     .......+|...|.+++|+|++..+++++.|+.|++
T Consensus        23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~l  102 (343)
T 2xzm_R           23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL  102 (343)
T ss_dssp             CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEE
T ss_pred             hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence            7999999     77 899999999999999999976421     233445689999999999999944444556799999


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce---E--------------
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP---I--------------  232 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~---~--------------  232 (427)
                      ||+.         ++                .....+..| ...|.+++|+|+|++++++..   +              
T Consensus       103 wd~~---------~~----------------~~~~~~~~h-~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~  156 (343)
T 2xzm_R          103 WDLR---------TG----------------TTYKRFVGH-QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA  156 (343)
T ss_dssp             EETT---------SS----------------CEEEEEECC-CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECC
T ss_pred             EECC---------CC----------------cEEEEEcCC-CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeee
Confidence            9997         11                334445666 788999999999998664421   0              


Q ss_pred             --EeccCCeEEEEEccCC----------CEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          233 --RRGFGGLSILKWSPTG----------DYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       233 --~~~~~~v~~~~~sp~g----------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                        ..|...+.+++|+|++          .+|++++.|+.|++||........+..|...|.+++|+|+|++|++++. ++
T Consensus       157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~-dg  235 (343)
T 2xzm_R          157 EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGK-DK  235 (343)
T ss_dssp             TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-TC
T ss_pred             cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEEEcC-CC
Confidence              1356779999999987          7899999999999999543323445589999999999999999998754 45


Q ss_pred             eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE---Eee
Q 014302          301 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS---LSL  377 (427)
Q Consensus       301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~---~~~  377 (427)
                      .+++|++......            ...+..+..|.+++|+|++++|+++   . |   +.|++|++.+.....   +..
T Consensus       236 ~v~iwd~~~~~~~------------~~~~~~~~~v~~v~~sp~~~~la~~---~-d---~~v~iw~~~~~~~~~~~~~~~  296 (343)
T 2xzm_R          236 KLLIWDILNLTYP------------QREFDAGSTINQIAFNPKLQWVAVG---T-D---QGVKIFNLMTQSKAPVCTIEA  296 (343)
T ss_dssp             EEEEEESSCCSSC------------SEEEECSSCEEEEEECSSSCEEEEE---E-S---SCEEEEESSSCCSCSEEECCC
T ss_pred             eEEEEECCCCccc------------ceeecCCCcEEEEEECCCCCEEEEE---C-C---CCEEEEEeCCCCCCceEEeec
Confidence            8888887442110            1112233479999999999998773   2 2   349999998765431   110


Q ss_pred             e--eeeeC-CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          378 I--GFIRG-PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       378 ~--~~~~~-~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      .  ..... .+......+++|+|+   |..|++|..||.|.+|++-
T Consensus       297 ~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          297 EPITKAEGQKGKNPQCTSLAWNAL---GKKLFAGFTDGVIRTFSFE  339 (343)
T ss_dssp             CSGGGBTTBCCSCCCEEEEEECSS---SCCEEEEETTSEEEEEEEE
T ss_pred             CcchhhhhhcCCCCceEEEEECCC---CCeEEEecCCceEEEEEEE
Confidence            0  00000 012233568999996   7789999999999999863

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.98  E-value=7.3e-30  Score=234.09  Aligned_cols=263  Identities=14%  Similarity=0.217  Sum_probs=197.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++||+++.|+.|+||++...  .......+|...|.+++|+|++..+++++.++.|++|++.       
T Consensus        25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-------   95 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG--KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-------   95 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-------
T ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCc--ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC-------
Confidence            7999999999999999999999999998876  4555667899999999999999555555567999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~  243 (427)
                        .+                .++..+..| ...|.+++|+|++++++++.                 .+..|...+.+++
T Consensus        96 --~~----------------~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  156 (312)
T 4ery_A           96 --SG----------------KCLKTLKGH-SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH  156 (312)
T ss_dssp             --TC----------------CEEEEEECC-SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             --CC----------------cEEEEEcCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence              11                334445555 77899999999998865332                 1334678899999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLL  319 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~  319 (427)
                      |+|++++|++++.|+.|++||+++++....  ..+...+..++|+|++++|++++. ++.+++|++.....  .+.+|..
T Consensus       157 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~  235 (312)
T 4ery_A          157 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL-DNTLKLWDYSKGKCLKTYTGHKN  235 (312)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET-TTEEEEEETTTTEEEEEECSSCC
T ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC-CCeEEEEECCCCcEEEEEEecCC
Confidence            999999999999999999999998876332  256778999999999999998754 45888888766421  1111111


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  399 (427)
                      ..           ..+......+++++|++   ++.|   |.|++||++++.++..     +.+..  ....+++|+|. 
T Consensus       236 ~~-----------~~~~~~~~~~~~~~l~s---g~~d---g~i~vwd~~~~~~~~~-----~~~h~--~~v~~~~~~p~-  290 (312)
T 4ery_A          236 EK-----------YCIFANFSVTGGKWIVS---GSED---NLVYIWNLQTKEIVQK-----LQGHT--DVVISTACHPT-  290 (312)
T ss_dssp             SS-----------SCCCEEEECSSSCEEEE---CCTT---SCEEEEETTTCCEEEE-----ECCCS--SCEEEEEECSS-
T ss_pred             ce-----------EEEEEEEEeCCCcEEEE---ECCC---CEEEEEECCCchhhhh-----hhccC--CcEEEEeecCc-
Confidence            00           01223333477888988   7777   6799999998876532     22322  23678999996 


Q ss_pred             CCCceeEEEe--eCceEEEEec
Q 014302          400 KQGPLLSVCW--SSGFCCTYPL  419 (427)
Q Consensus       400 ~~g~~l~v~~--~~g~i~~~~~  419 (427)
                        +.+|+.+.  .||.|.+|..
T Consensus       291 --~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          291 --ENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             --SSEEEEEECTTTCCEEEEEC
T ss_pred             --CCceEEEEccCCccEEEecC
Confidence              66777765  5999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.98  E-value=1.9e-30  Score=244.93  Aligned_cols=284  Identities=13%  Similarity=0.131  Sum_probs=200.9

Q ss_pred             CCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302           96 LLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus        96 ~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      .+.+|  .|++++|+|++++||+|+.|++|+|||+...  ........|...|.+++|+|++..+++++.++.+++|++.
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~--~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS--QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT--EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence            34566  8999999999999999999999999999877  4555566789999999999999444444456999999986


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC-CcccC--------------ceE------
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-FPGLG--------------TPI------  232 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~--------------~~~------  232 (427)
                      .....                  .........+.+| ...+.++.|.|++. .+.++              ..+      
T Consensus       139 ~~~~~------------------~~~~~~~~~~~gh-~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~  199 (380)
T 3iz6_a          139 SQADR------------------DGNMPVSRVLTGH-KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE  199 (380)
T ss_dssp             CCSSC------------------CCSSTTCCBCCCC-SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCC
T ss_pred             CCccc------------------cCCccceeeccCC-CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecc
Confidence            21100                  0011112234444 66777788887543 22221              111      


Q ss_pred             --EeccCCeEEEEEcc-CCCEEEEEecCCcEEEEEcCCC-Cc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302          233 --RRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  307 (427)
Q Consensus       233 --~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~-~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~  307 (427)
                        ..|...+.+++|++ ++.+|++|+.|+.|++||++.. +. ..+.+|...|.+++|+|+|++|+++ +.++.+++|++
T Consensus       200 ~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~-s~D~~i~lwd~  278 (380)
T 3iz6_a          200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG-SDDGTCRLFDM  278 (380)
T ss_dssp             SSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE-CSSSCEEEEET
T ss_pred             cCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE-cCCCeEEEEEC
Confidence              24667899999977 8889999999999999999854 33 3445899999999999999999876 45558888888


Q ss_pred             CCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCC
Q 014302          308 ASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG  385 (427)
Q Consensus       308 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~  385 (427)
                      .....  .+..+..       ........|.+++|+|+|++|++   ++.|   |.|++||+..++.+... .....+. 
T Consensus       279 ~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~~g~~l~~---g~~d---g~i~vwd~~~~~~~~~~-~~~~~~h-  343 (380)
T 3iz6_a          279 RTGHQLQVYNREPD-------RNDNELPIVTSVAFSISGRLLFA---GYSN---GDCYVWDTLLAEMVLNL-GTLQNSH-  343 (380)
T ss_dssp             TTTEEEEEECCCCS-------SSCCSSCSCSEEEECSSSSEEEE---ECTT---SCEEEEETTTCCEEEEE-CCSCSSC-
T ss_pred             CCCcEEEEeccccc-------ccccccCceEEEEECCCCCEEEE---EECC---CCEEEEECCCCceEEEE-ecccCCC-
Confidence            76421  1111100       00011125899999999999999   6666   66999999887765221 0111122 


Q ss_pred             CCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          386 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       386 ~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                       .....+++|.|+   |..|+.|..||.|.+|++-
T Consensus       344 -~~~v~~l~~s~d---g~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          344 -EGRISCLGLSSD---GSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             -CCCCCEEEECSS---SSEEEEECTTSCEEEEECC
T ss_pred             -CCceEEEEECCC---CCEEEEeeCCCCEEEEecC
Confidence             223668999986   7889999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.98  E-value=9.8e-30  Score=235.01  Aligned_cols=265  Identities=13%  Similarity=0.147  Sum_probs=202.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-cee--eccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACI--LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-~~~--~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~  177 (427)
                      .|++++|+|++++|++++ |+.|++|++...... ...  ....|...|.+++|+|++..+++++.++.|++|++..   
T Consensus        53 ~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~---  128 (337)
T 1gxr_A           53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA---  128 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC---
T ss_pred             ceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCC---
Confidence            789999999999999998 999999999876221 111  1226888999999999995455555669999999971   


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeE
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLS  240 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~  240 (427)
                                          ........+..+ ...+.+++|+|+++++..+.                 .+..|...+.
T Consensus       129 --------------------~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~  187 (337)
T 1gxr_A          129 --------------------PTPRIKAELTSS-APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             --------------------C--EEEEEEECS-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             --------------------CCcceeeecccC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceE
Confidence                                111233334444 67899999999998754331                 1334778899


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      +++|+|++++|++++.|+.|++||+++.+......+...+.+++|+|+++++++++.+ +.+++|++.....        
T Consensus       188 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~-~~i~~~~~~~~~~--------  258 (337)
T 1gxr_A          188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES-SNVEVLHVNKPDK--------  258 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETT-SCEEEEETTSSCE--------
T ss_pred             EEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCC-CcEEEEECCCCCe--------
Confidence            9999999999999999999999999988876666788899999999999999987554 4788888766421        


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                           .....+...|.+++|+|++++|++   ++.|   |.|++||+.++..+...      .  ......+++|.|+  
T Consensus       259 -----~~~~~~~~~v~~~~~~~~~~~l~~---~~~d---g~i~~~~~~~~~~~~~~------~--~~~~v~~~~~s~~--  317 (337)
T 1gxr_A          259 -----YQLHLHESCVLSLKFAYCGKWFVS---TGKD---NLLNAWRTPYGASIFQS------K--ESSSVLSCDISVD--  317 (337)
T ss_dssp             -----EEECCCSSCEEEEEECTTSSEEEE---EETT---SEEEEEETTTCCEEEEE------E--CSSCEEEEEECTT--
T ss_pred             -----EEEcCCccceeEEEECCCCCEEEE---ecCC---CcEEEEECCCCeEEEEe------c--CCCcEEEEEECCC--
Confidence                 111234458999999999999998   4555   67999999988765221      1  1223668899886  


Q ss_pred             CCceeEEEeeCceEEEEeccc
Q 014302          401 QGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       401 ~g~~l~v~~~~g~i~~~~~~~  421 (427)
                       +..|+++..+|.|.+|++.|
T Consensus       318 -~~~l~~~~~dg~i~iw~~~~  337 (337)
T 1gxr_A          318 -DKYIVTGSGDKKATVYEVIY  337 (337)
T ss_dssp             -SCEEEEEETTSCEEEEEEEC
T ss_pred             -CCEEEEecCCCeEEEEEEeC
Confidence             77899999999999999876

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=1.4e-29  Score=239.98  Aligned_cols=275  Identities=14%  Similarity=0.168  Sum_probs=196.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC------------------CcCCeeEEEEccCCCceEEEe
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD------------------SQRDVKVLEWRPNGGRSLSVG  162 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~------------------~~~~v~~l~~sp~~~~~la~g  162 (427)
                      .|++++|+|+|++||+|+ +++++||++..+  ........                  +...|++++|+|++..+++++
T Consensus        66 ~V~~v~fspdg~~la~g~-~~~v~i~~~~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~  142 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDG--SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA  142 (393)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTC--CEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred             EEEEEEECCCCCEEEEEc-CCcEEEEEecCC--CEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence            799999999999999986 789999999876  22222222                  223489999999995444445


Q ss_pred             cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------
Q 014302          163 CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------  231 (427)
Q Consensus       163 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------  231 (427)
                      .++.|++||+.         .+                .....+..| ...|.+++|+|+++++.++..           
T Consensus       143 ~d~~i~iwd~~---------~~----------------~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~  196 (393)
T 1erj_A          143 EDRLIRIWDIE---------NR----------------KIVMILQGH-EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT  196 (393)
T ss_dssp             TTSCEEEEETT---------TT----------------EEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCCeEEEEECC---------CC----------------cEEEEEccC-CCCEEEEEEcCCCCEEEEecCCCcEEEEECCC
Confidence            56999999997         11                344556666 788999999999988654321           


Q ss_pred             ---E--EeccCCeEEEEEcc-CCCEEEEEecCCcEEEEEcCCCCccc-c-------ccCCCCeeEEEECCCCCEEEEEEc
Q 014302          232 ---I--RRGFGGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEP-W-------SSTSGFVTGATWDPEGRMILLAFA  297 (427)
Q Consensus       232 ---~--~~~~~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~-~-------~~~~~~v~~v~~spdg~~l~~~~~  297 (427)
                         .  ..+...+.+++|+| ++++|++++.|+.|++||++++.... +       ..|...|.+++|+|+|++|++++ 
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-  275 (393)
T 1erj_A          197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-  275 (393)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-
T ss_pred             CeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-
Confidence               1  12456799999999 89999999999999999998876522 1       36888999999999999998775 


Q ss_pred             CCceeeeeeeCCCCCCccccccccccc-cceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          298 GSLTLGSIHFASKPPSLDAHLLPVDLP-DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       298 ~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                      .++.+++|++.......... .+.... ......+...|.+++|+|++++|++   ++.|   ++|++||++++..+.  
T Consensus       276 ~d~~v~~wd~~~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s---gs~D---~~v~iwd~~~~~~~~--  346 (393)
T 1erj_A          276 LDRSVKLWNLQNANNKSDSK-TPNSGTCEVTYIGHKDFVLSVATTQNDEYILS---GSKD---RGVLFWDKKSGNPLL--  346 (393)
T ss_dssp             TTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEE---EETT---SEEEEEETTTCCEEE--
T ss_pred             CCCEEEEEECCCCCCccccc-CCCCCcceEEEecccCcEEEEEECCCCCEEEE---EeCC---CeEEEEECCCCeEEE--
Confidence            45588888886532110000 000000 0122335568999999999999998   6666   679999999887652  


Q ss_pred             eeeeeeCCCCCCCceeEEeccCC---CCCceeEEEeeCceEEEEec
Q 014302          377 LIGFIRGPGDNPKPVAFSFHDKF---KQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~f~~~~---~~g~~l~v~~~~g~i~~~~~  419 (427)
                         .+.+...  ...+++|.+..   ..+.+|+.|..||.|.+|++
T Consensus       347 ---~l~~h~~--~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~  387 (393)
T 1erj_A          347 ---MLQGHRN--SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY  387 (393)
T ss_dssp             ---EEECCSS--CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             ---EECCCCC--CEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence               2333332  35688887742   24678999999999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-29  Score=233.33  Aligned_cols=280  Identities=14%  Similarity=0.252  Sum_probs=189.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec-cC-CcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT-SD-SQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~-~~-~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~  177 (427)
                      .|.+++|+|+  +||+|+.|++|+||++........... .. |...|.+++|+|++ .+|+++ .|+.|+||++.....
T Consensus        16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~   92 (330)
T 2hes_X           16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESAD   92 (330)
T ss_dssp             CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC-----
T ss_pred             ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcC
Confidence            7999999998  999999999999999986522222222 34 99999999999999 555555 569999999851100


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc---------------------eEEecc
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT---------------------PIRRGF  236 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~---------------------~~~~~~  236 (427)
                                        ..........+.+| ...|.+++|+|+|++++++.                     .+..|.
T Consensus        93 ------------------~~~~~~~~~~~~~h-~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~  153 (330)
T 2hes_X           93 ------------------RTFEMDLLAIIEGH-ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS  153 (330)
T ss_dssp             --------------------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS
T ss_pred             ------------------ccccceeEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC
Confidence                              00012344456666 78899999999999865331                     133477


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCC--c-cccccCCCCeeEEEECCC--CCEEEEEEcCCceeeeeeeCCCC
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWT--S-EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKP  311 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~--~-~~~~~~~~~v~~v~~spd--g~~l~~~~~~~~~i~~~~~~~~~  311 (427)
                      ..|.+++|+|++++|++++.|++|++||+....  + ..+..|...|.+++|+|+  +.+|++++ .++.+++|++....
T Consensus       154 ~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~D~~v~iw~~~~~~  232 (330)
T 2hes_X          154 QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS-DDSTVRVWKYMGDD  232 (330)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE-TTSCEEEEEEEEEC
T ss_pred             CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe-CCCeEEEEEecCCC
Confidence            889999999999999999999999999987663  3 334489999999999998  66777664 55588888876531


Q ss_pred             CCccccccccccccceee--ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCC
Q 014302          312 PSLDAHLLPVDLPDIVSL--TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK  389 (427)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  389 (427)
                      ......     ......+  .+...|.+++|++++ +||+   ++.|   |+|+||+..++......  ....+... ..
T Consensus       233 ~~~~~~-----~~~~~~~~~~h~~~v~~v~~s~~~-~l~s---~~~d---g~v~iw~~~~~~~~~~~--~~~~~h~~-~~  297 (330)
T 2hes_X          233 EDDQQE-----WVCEAILPDVHKRQVYNVAWGFNG-LIAS---VGAD---GVLAVYEEVDGEWKVFA--KRALCHGV-YE  297 (330)
T ss_dssp             TTSCEE-----EEEEEECCSCCSSCEEEEEECTTS-CEEE---EETT---SCEEEEEEETTEEEEEE--EESCTTTT-SC
T ss_pred             ccccce-----eEEeeecccccccceEEEEEcCCC-EEEE---EeCC---CEEEEEEcCCCceEEEe--cccccccc-ce
Confidence            100000     0001111  145689999999766 6777   4555   67999999876421110  01111111 13


Q ss_pred             ceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       390 ~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ..+++|.|. .++.+|+.|..||.|.+|++
T Consensus       298 v~~v~~~~~-~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          298 INVVKWLEL-NGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             EEEEEEC------CCEEEEETTSEEEEEEC
T ss_pred             EEEEEEecC-CCceEEEEecCCCcEEEEEe
Confidence            568899884 23678999999999999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.97  E-value=5.2e-29  Score=226.89  Aligned_cols=252  Identities=14%  Similarity=0.190  Sum_probs=181.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC--CCceEEEe-cCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVG-CKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~la~g-~~~~i~iw~~~~~~~  177 (427)
                      .|++++|+|+|++||+|+.|++|+||++............+|...|++++|+|+  + .+|+++ .|++|++|++.    
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-~~l~s~s~D~~v~iWd~~----   85 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVMIWKEE----   85 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-SEEEEEETTTEEEEEEBS----
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-CEEEEEcCCCEEEEEEcC----
Confidence            799999999999999999999999999976433445566789999999999864  6 555555 56999999997    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC--CCEEEEEe
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT--GDYFFAAK  255 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~  255 (427)
                           .+              .+...                          ..+..|...|.+++|+|+  |.+|++++
T Consensus        86 -----~~--------------~~~~~--------------------------~~~~~h~~~v~~v~~~p~~~g~~l~s~s  120 (297)
T 2pm7_B           86 -----NG--------------RWSQI--------------------------AVHAVHSASVNSVQWAPHEYGPMLLVAS  120 (297)
T ss_dssp             -----SS--------------CBCCC--------------------------EEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             -----CC--------------ceEEE--------------------------EEeecCCCceeEEEeCcCCCCcEEEEEE
Confidence                 11              00000                          022346678999999997  88999999


Q ss_pred             cCCcEEEEEcCCCCc---cccccCCCCeeEEEECCC-------------CCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302          256 FDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPE-------------GRMILLAFAGSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~---~~~~~~~~~v~~v~~spd-------------g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      .|+.|++||++....   ..+..|...|.+++|+|+             +++|++++ .++.+++|++........   .
T Consensus       121 ~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~~~~~~~~---~  196 (297)
T 2pm7_B          121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYV---L  196 (297)
T ss_dssp             TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE-TTSCEEEEEEETTTTEEE---E
T ss_pred             CCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc-CCCcEEEEEEcCCCceEE---E
Confidence            999999999987642   233488999999999997             46787765 555888998876421100   0


Q ss_pred             ccccccceeeccCCceeEEEECCCC---CEEEEEEecCCCcceeEEEEEEeccCce-EEEeeeeeeeCCCCCCCceeEEe
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASG---ERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLSLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g---~~La~~~~~~~d~~~g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f  395 (427)
                           ......|...|.+++|+|++   ++||+   ++.|   ++|+|||++.... ....   .+..........+++|
T Consensus       197 -----~~~l~~H~~~V~~v~~sp~~~~~~~las---~s~D---~~v~iWd~~~~~~~~~~~---~~~~~~~~~~v~~~~~  262 (297)
T 2pm7_B          197 -----ESTLEGHSDWVRDVAWSPTVLLRSYMAS---VSQD---RTCIIWTQDNEQGPWKKT---LLKEEKFPDVLWRASW  262 (297)
T ss_dssp             -----EEEECCCSSCEEEEEECCCCSSSEEEEE---EETT---SCEEEEEESSTTSCCEEE---ESSSSCCSSCEEEEEE
T ss_pred             -----EEEecCCCCceEEEEECCCCCCceEEEE---EECC---CcEEEEEeCCCCCcccee---eeecccCCCcEEEEEE
Confidence                 00111244589999999995   78888   5666   6699999976431 0000   1111112233668999


Q ss_pred             ccCCCCCceeEEEeeCceEEEEeccccC
Q 014302          396 HDKFKQGPLLSVCWSSGFCCTYPLIFRS  423 (427)
Q Consensus       396 ~~~~~~g~~l~v~~~~g~i~~~~~~~~~  423 (427)
                      .|+   |.+|+++..||.|.+|+.-..+
T Consensus       263 s~~---g~~las~~~D~~v~lw~~~~~g  287 (297)
T 2pm7_B          263 SLS---GNVLALSGGDNKVTLWKENLEG  287 (297)
T ss_dssp             CSS---SCCEEEEETTSCEEEEEECTTS
T ss_pred             CCC---CCEEEEEcCCCcEEEEEECCCC
Confidence            986   7789999999999999876554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=6.3e-29  Score=234.57  Aligned_cols=276  Identities=15%  Similarity=0.142  Sum_probs=193.8

Q ss_pred             ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc-CCCceEEEe-cCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVG-CKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~la~g-~~~~i~iw~~~~~~~  177 (427)
                      .|++++|+|++ ++||+|+.|+.|+|||+............+|...|.+++|+| ++ .+|+++ .++.|++|++.    
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~----  149 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNT-NQLFVSSIRGATTLRDFS----  149 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEE-EEEEEEETTTEEEEEETT----
T ss_pred             CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCC-CEEEEEeCCCEEEEEECC----
Confidence            79999999999 899999999999999998773333333346999999999999 55 555555 56999999997    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------------eEEeccCCeEE
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT----------------PIRRGFGGLSI  241 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------~~~~~~~~v~~  241 (427)
                                         +........... ....|.+++|+|++++++.+.                .+..|...|.+
T Consensus       150 -------------------~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~  209 (383)
T 3ei3_B          150 -------------------GSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTH  209 (383)
T ss_dssp             -------------------SCEEEEEECCCC-SSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEE
T ss_pred             -------------------CCceEEEeccCC-CCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEE
Confidence                               111122221122 247799999999999866432                23457889999


Q ss_pred             EEEccCCC-EEEEEecCCcEEEEEcCCCC----ccccccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCCCC--C
Q 014302          242 LKWSPTGD-YFFAAKFDGTFYLWETNTWT----SEPWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPP--S  313 (427)
Q Consensus       242 ~~~sp~g~-~l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~~~--~  313 (427)
                      ++|+|+++ +|++++.|+.|++||+++.+    ......|...|.+++|+| ++++|++++. ++.+++|++.....  .
T Consensus       210 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~  288 (383)
T 3ei3_B          210 AEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSYDWSKPDQ  288 (383)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEES-SSEEEEEETTBTTSCSE
T ss_pred             EEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcC-CCcEEEEECCCCccccc
Confidence            99999999 88999999999999999843    333347999999999999 9999997754 45888888876422  2


Q ss_pred             ccccccccc--ccc-ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCc
Q 014302          314 LDAHLLPVD--LPD-IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP  390 (427)
Q Consensus       314 ~~~~~~~~~--~~~-~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  390 (427)
                      +.+|.....  ... .......+.+..++|+|+|++  +   ++.|   +.|+|||+.++.++..     +.+.......
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s---~s~d---~~i~iwd~~~~~~~~~-----l~~~~~~~~~  355 (383)
T 3ei3_B          289 IIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--L---LNDK---RTIDIYDANSGGLVHQ-----LRDPNAAGII  355 (383)
T ss_dssp             EEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--C---TTCC---CCEEEEETTTCCEEEE-----ECBTTBCSCC
T ss_pred             cccccccccccccceEEeccCCCCceEEEecCCccc--c---cCCC---CeEEEEecCCCceeee-----ecCCCCCceE
Confidence            222221110  000 001111234555666666666  3   6666   6799999998887532     2232222223


Q ss_pred             eeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          391 VAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       391 ~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .+++|.|+   +.+|++| +||.|.+|++
T Consensus       356 ~~~~~s~~---g~~l~s~-sd~~i~iw~~  380 (383)
T 3ei3_B          356 SLNKFSPT---GDVLASG-MGFNILIWNR  380 (383)
T ss_dssp             CEEEECTT---SSEEEEE-ETTEEEEEEC
T ss_pred             EEEEEecC---ccEEEEe-cCCcEEEEec
Confidence            45699986   7788888 5999999986

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=4.4e-29  Score=248.41  Aligned_cols=285  Identities=17%  Similarity=0.256  Sum_probs=196.1

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEecc
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPS  173 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~  173 (427)
                      |++|  .|++++|||||++||+|+.|++|+|||...   +......+|...|++++|+||+ ++|+++ .++.|+|||+.
T Consensus        12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~---~~~~~l~gh~~~V~~l~fspdg-~~las~~~d~~i~vWd~~   87 (577)
T 2ymu_A           12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN   87 (577)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETT
T ss_pred             ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC---CEEEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECC
Confidence            4566  799999999999999999999999999643   3555667899999999999999 555555 56999999964


Q ss_pred             CCCCccccccCcccccc--cccCC----------CC------------------cce-----------------------
Q 014302          174 YPGNAASVRSGAASFLG--ALSRG----------PG------------------TRW-----------------------  200 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~--~~~~~----------~~------------------~~~-----------------------  200 (427)
                        +.......+......  .+..+          +.                  ...                       
T Consensus        88 --~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  165 (577)
T 2ymu_A           88 --GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL  165 (577)
T ss_dssp             --SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             --CCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceec
Confidence              211111000000000  00000          00                  000                       


Q ss_pred             -----eEeehhcccCCCceeeeEeCCCCCCcccCc----------------eEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          201 -----TLVDFLRSQNGEQITALSWGPDGRFPGLGT----------------PIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       201 -----~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                           ....... .....+.++.|+|+|++++++.                .+..|...+.+++|+|++++|++++.|+.
T Consensus       166 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~  244 (577)
T 2ymu_A          166 WNRNGQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT  244 (577)
T ss_dssp             ECTTSCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             cccceeeeeecc-CCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCE
Confidence                 0000011 1244566778888887754331                23457789999999999999999999999


Q ss_pred             EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEE
Q 014302          260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA  339 (427)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  339 (427)
                      |++||........+..|...|.+++|+|+++.|++++.+ +.+++|+......             .....+...|.+++
T Consensus       245 i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d-~~i~~w~~~~~~~-------------~~~~~h~~~v~~~~  310 (577)
T 2ymu_A          245 VKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDD-KTVKLWNRNGQLL-------------QTLTGHSSSVWGVA  310 (577)
T ss_dssp             EEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTSCEE-------------EEECCCSSCEEEEE
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-CEEEEEeCCCcEE-------------EEEecCCCCeEEEE
Confidence            999997544345555899999999999999999987554 4777777533210             01112345899999


Q ss_pred             ECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          340 WDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       340 ~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      |+|++++|++   ++.|   ++|++||+....+..+      .+.  .....+++|.|+   |..|++|..+|.|.+|+.
T Consensus       311 ~~~~~~~l~t---~~~d---~~i~~w~~~~~~~~~~------~~~--~~~v~~~~~s~~---g~~l~~~~~dg~v~~~~~  373 (577)
T 2ymu_A          311 FSPDGQTIAS---ASDD---KTVKLWNRNGQHLQTL------TGH--SSSVWGVAFSPD---GQTIASASDDKTVKLWNR  373 (577)
T ss_dssp             ECTTSSEEEE---EETT---SCEEEEETTSCEEEEE------CCC--SSCEEEEEECTT---SSEEEEEETTSEEEEEET
T ss_pred             ECCCCCEEEE---EeCC---CeEEEEeCCCCeeEEE------eCC--CCCEEEEEECCC---CCEEEEEeCCCEEEEEcC
Confidence            9999999998   4455   6699999876554322      222  223668999886   788999999999999984

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=3.3e-29  Score=240.77  Aligned_cols=274  Identities=14%  Similarity=0.144  Sum_probs=186.9

Q ss_pred             ceeeeEEcCC-CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~  178 (427)
                      .|++|+|||. +.+||+|+.||+|+|||+............+|...|++|+|+|.+..+|+++ .|++|++||+.     
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~-----  195 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-----  195 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT-----
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc-----
Confidence            6999999995 5699999999999999998774444445567999999999999533555555 56999999987     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------------eEEeccCCeEEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT----------------PIRRGFGGLSIL  242 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------~~~~~~~~v~~~  242 (427)
                          .+              ......... .....+.+++|+|++++++++.                .+..|...|.++
T Consensus       196 ----~~--------------~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v  256 (435)
T 4e54_B          196 ----GN--------------ILRVFASSD-TINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHV  256 (435)
T ss_dssp             ----SC--------------EEEEEECCS-SCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEE
T ss_pred             ----CC--------------ceeEEeccC-CCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEee
Confidence                11              111111111 1244567889999988865432                134578899999


Q ss_pred             EEccCCC-EEEEEecCCcEEEEEcCCCCccc----cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccc
Q 014302          243 KWSPTGD-YFFAAKFDGTFYLWETNTWTSEP----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLD  315 (427)
Q Consensus       243 ~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~  315 (427)
                      +|+|+++ +|++++.|+.|++||+++.+...    ...|...|.+++|+|+|++|++++. ++.+++|++.+...  .+.
T Consensus       257 ~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~-D~~i~iwd~~~~~~~~~~~  335 (435)
T 4e54_B          257 ALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ-KSEIRVYSASQWDCPLGLI  335 (435)
T ss_dssp             EECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES-SSCEEEEESSSSSSEEEEC
T ss_pred             eecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC-CCEEEEEECCCCccceEEe
Confidence            9999987 56699999999999998876532    2378999999999999999998754 55888888876422  111


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEe---------cCCCcceeEEEEEEeccCceEEEeeeeeeeCCCC
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK---------GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD  386 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~---------~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~  386 (427)
                      .|....        .....+..+.|+|++.++++++.         +.++   +.|++||+.++.++....     ....
T Consensus       336 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~i~iwd~~~g~~~~~l~-----~~~~  399 (435)
T 4e54_B          336 PHPHRH--------FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL---RTIDVFDGNSGKMMCQLY-----DPES  399 (435)
T ss_dssp             CCCCCC--------CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC---CCEEEECSSSCCEEEEEC-----CSSC
T ss_pred             cccccc--------cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC---CEEEEEECCCCcEEEEEe-----CCCC
Confidence            111100        00012234456666666555321         2222   569999999988763321     1111


Q ss_pred             CCCceeE-EeccCCCCCceeEEEeeCceEEEEecc
Q 014302          387 NPKPVAF-SFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       387 ~~~~~~~-~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                       ....++ +|+|+   |.+|+.| +++.|.+|++.
T Consensus       400 -~~v~s~~~fspd---g~~lasg-~d~~i~iW~~~  429 (435)
T 4e54_B          400 -SGISSLNEFNPM---GDTLASA-MGYHILIWSQQ  429 (435)
T ss_dssp             -CCCCCEEEECTT---SSCEEEE-CSSEEEECCCC
T ss_pred             -CcEEEEEEECCC---CCEEEEE-cCCcEEEEECC
Confidence             123344 69886   7788887 58999999863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.9e-28  Score=227.05  Aligned_cols=266  Identities=11%  Similarity=0.086  Sum_probs=200.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++++.|+.|+|||+...  ........|...|.+++|+|++..+++++.++.|++|++.       
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-------  104 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-------  104 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-------
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-------
Confidence            7999999999999999999999999999877  5556667899999999999999555555567999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------e---------------------
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------P---------------------  231 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------~---------------------  231 (427)
                        .+                .....+.  ....+.+++|+|+++++..+.        .                     
T Consensus       105 --~~----------------~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~  164 (369)
T 3zwl_B          105 --NG----------------QCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE  164 (369)
T ss_dssp             --TC----------------CEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred             --CC----------------cEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence              11                2233333  367899999999998755321        0                     


Q ss_pred             ----EEeccC--CeEEEEEccCCCEEEEEecCCcEEEEEcCCC-Cc-cccccCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302          232 ----IRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNTW-TS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  303 (427)
Q Consensus       232 ----~~~~~~--~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~-~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~  303 (427)
                          +..+..  .+.+++|+|++++|++++.||.|++||+++. +. ..+..|...|.+++|+|++++|++++. ++.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~  243 (369)
T 3zwl_B          165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR-DTNSF  243 (369)
T ss_dssp             CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET-TSEEE
T ss_pred             eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC-CceEE
Confidence                111222  8999999999999999999999999999983 43 334478899999999999999988754 44888


Q ss_pred             eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC--------cceeEEEEEEeccCceEEE
Q 014302          304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD--------IYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d--------~~~g~i~vwd~~~~~~~~~  375 (427)
                      +|++.....             ...+.....+..++|+|++++|+++...+..        .....|++||+.++..+..
T Consensus       244 v~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~  310 (369)
T 3zwl_B          244 LVDVSTLQV-------------LKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR  310 (369)
T ss_dssp             EEETTTCCE-------------EEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred             EEECCCCce-------------eeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence            888765421             1122244589999999999999995322100        0001699999988876532


Q ss_pred             eeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          376 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                           +.+..  ....+++|.|+   +.+|+++..||.|.+|++
T Consensus       311 -----~~~~~--~~v~~~~~s~~---~~~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          311 -----VQGHF--GPLNTVAISPQ---GTSYASGGEDGFIRLHHF  344 (369)
T ss_dssp             -----EECCS--SCEEEEEECTT---SSEEEEEETTSEEEEEEE
T ss_pred             -----eeccc--CcEEEEEECCC---CCEEEEEcCCCeEEEEEC
Confidence                 22322  23668999985   778999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=232.22  Aligned_cols=220  Identities=18%  Similarity=0.285  Sum_probs=173.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .|.+++|+|++.++++++.|++|+|||+..+  ........|...+.+++|+|++ .+|+++ .++.+++|++.      
T Consensus        82 ~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~--~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~------  152 (321)
T 3ow8_A           82 GVVSVDISHTLPIAASSSLDAHIRLWDLENG--KQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVE------  152 (321)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETT------
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEECCCC--CEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcC------
Confidence            7999999999999999999999999999877  4455556677889999999999 455555 55999999997      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------e---EEeccCCeEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------P---IRRGFGGLSIL  242 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------~---~~~~~~~v~~~  242 (427)
                         .+                .....+..+ ...+.+++|+|+|++++.+.              .   +..|...|.++
T Consensus       153 ---~~----------------~~~~~~~~~-~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l  212 (321)
T 3ow8_A          153 ---SG----------------KKEYSLDTR-GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSL  212 (321)
T ss_dssp             ---TC----------------SEEEEEECS-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEE
T ss_pred             ---CC----------------ceeEEecCC-CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEE
Confidence               11                122223333 66799999999999866432              1   34477889999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccc
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  321 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  321 (427)
                      +|+|++++|++++.|+.|++||+++.+.. .+..|...|.+++|+|++++|++++. ++.+++|++......        
T Consensus       213 ~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-D~~v~iwd~~~~~~~--------  283 (321)
T 3ow8_A          213 TFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSS-DKSVKVWDVGTRTCV--------  283 (321)
T ss_dssp             EECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEE--------
T ss_pred             EEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCEEE--------
Confidence            99999999999999999999999987764 44589999999999999999998755 458888887654210        


Q ss_pred             ccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          322 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       322 ~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                          .....+.+.|.+++|+|+|++|++   ++.|   ++|+|||..
T Consensus       284 ----~~~~~h~~~v~~v~~s~~g~~l~s---~~~d---~~i~vwd~p  320 (321)
T 3ow8_A          284 ----HTFFDHQDQVWGVKYNGNGSKIVS---VGDD---QEIHIYDCP  320 (321)
T ss_dssp             ----EEECCCSSCEEEEEECTTSSEEEE---EETT---CCEEEEECC
T ss_pred             ----EEEcCCCCcEEEEEECCCCCEEEE---EeCC---CeEEEEeCC
Confidence                111224458999999999999998   5556   669999963

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=3.2e-28  Score=225.37  Aligned_cols=273  Identities=12%  Similarity=0.177  Sum_probs=196.9

Q ss_pred             CCCC--ceeeeEEcCC-CCEEEEEeCCCeEEEEEccCCCC---cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302           97 LPEV--DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDSGK---DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (427)
Q Consensus        97 l~~~--~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw  170 (427)
                      |.+|  .|++|+|+|+ +++||+|+.|++|+|||+.....   .......+|...|.+++|+|++..+++++.++.|++|
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence            4566  8999999998 57999999999999999987622   2334456799999999999999555555567999999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------------------E
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------------I  232 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------------~  232 (427)
                      +...         .                ........+ ...+....++++++++.++..                  .
T Consensus       114 ~~~~---------~----------------~~~~~~~~~-~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~  167 (340)
T 4aow_A          114 DLTT---------G----------------TTTRRFVGH-TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD  167 (340)
T ss_dssp             ETTT---------T----------------EEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             eecc---------c----------------ceeeeecCC-CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEe
Confidence            9871         1                112222222 556667777777776543311                  1


Q ss_pred             EeccCCeEEEEEccCC--CEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          233 RRGFGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       233 ~~~~~~v~~~~~sp~g--~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      ..|...+..++|++++  .++++++.|+.|++||+++.+.. .+..|...|.+++|+|++++|++++. ++.+++|++..
T Consensus       168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-Dg~i~iwd~~~  246 (340)
T 4aow_A          168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK-DGQAMLWDLNE  246 (340)
T ss_dssp             SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TCEEEEEETTT
T ss_pred             ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC-CCeEEEEEecc
Confidence            2356789999998876  46779999999999999988774 44589999999999999999998754 45888887765


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeee--CCCCC
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR--GPGDN  387 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~--~~~~~  387 (427)
                      ...             ...+.++..|..++|+|++.+++.+   . |   +.|++||++.+.++.........  .....
T Consensus       247 ~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~~---~-d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~  306 (340)
T 4aow_A          247 GKH-------------LYTLDGGDIINALCFSPNRYWLCAA---T-G---PSIKIWDLEGKIIVDELKQEVISTSSKAEP  306 (340)
T ss_dssp             TEE-------------EEEEECSSCEEEEEECSSSSEEEEE---E-T---TEEEEEETTTTEEEEEECCC-------CCC
T ss_pred             Cce-------------eeeecCCceEEeeecCCCCceeecc---C-C---CEEEEEECCCCeEEEeccccceeeeccCCC
Confidence            411             1223345589999999999877663   2 3   56999999887665432211111  11233


Q ss_pred             CCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          388 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       388 ~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ....+++|.|+   |..|++|..||.|.+|++
T Consensus       307 ~~v~~l~~s~d---g~~l~sgs~Dg~v~iW~~  335 (340)
T 4aow_A          307 PQCTSLAWSAD---GQTLFAGYTDNLVRVWQV  335 (340)
T ss_dssp             CCEEEEEECTT---SSEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEECCC---CCEEEEEeCCCEEEEEeC
Confidence            44678999986   778999999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=3.3e-29  Score=232.71  Aligned_cols=227  Identities=15%  Similarity=0.171  Sum_probs=164.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcc--eeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA--CILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|++++|+|++ .|++|+.||+|+|||+..+....  .....+|...|++++|+|++..+++++.++.|++||+.     
T Consensus        84 ~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-----  157 (344)
T 4gqb_B           84 GVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-----  157 (344)
T ss_dssp             CEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----
T ss_pred             CEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-----
Confidence            69999999986 67799999999999998873222  22345799999999999999444444456999999997     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-cccC--------------ceE-----EeccCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-PGLG--------------TPI-----RRGFGG  238 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~--------------~~~-----~~~~~~  238 (427)
                          ++                .++..+.+| ...|.+++|+|++.. ++++              ...     ..+...
T Consensus       158 ----~~----------------~~~~~~~~h-~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  216 (344)
T 4gqb_B          158 ----QQ----------------VVLSSYRAH-AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL  216 (344)
T ss_dssp             ----TT----------------EEEEEECCC-SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCC
T ss_pred             ----CC----------------cEEEEEcCc-CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecc
Confidence                22                456667776 889999999999864 3322              111     123456


Q ss_pred             eEEEEEccCC-CEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCC-EEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          239 LSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       239 v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~-~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      +.+++|+|++ ++|++|+.||.|++||++++++. .+..|...|.+++|+|+|. +|+++ +.++.+++|++.....   
T Consensus       217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg-s~D~~i~vwd~~~~~~---  292 (344)
T 4gqb_B          217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASL-SEDCSLAVLDSSLSEL---  292 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEE-ETTSCEEEECTTCCEE---
T ss_pred             ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEE-eCCCeEEEEECCCCcE---
Confidence            8899999965 57789999999999999988874 4558999999999999985 56555 5566888887655311   


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                                .....|.+.|++|+|+|+++.|+++  ++.|   ++|++|++.+.++.
T Consensus       293 ----------~~~~~H~~~V~~v~~sp~~~~llas--~s~D---~~v~~w~v~~~~~~  335 (344)
T 4gqb_B          293 ----------FRSQAHRDFVRDATWSPLNHSLLTT--VGWD---HQVVHHVVPTEPLP  335 (344)
T ss_dssp             ----------EEECCCSSCEEEEEECSSSTTEEEE--EETT---SCEEEEECCC----
T ss_pred             ----------EEEcCCCCCEEEEEEeCCCCeEEEE--EcCC---CeEEEEECCCCCCC
Confidence                      1112345689999999999765433  5666   67999999876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=1e-28  Score=245.80  Aligned_cols=256  Identities=17%  Similarity=0.281  Sum_probs=197.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .|.+++|+|++++|++++.|++|++|++...   .......|...|.+++|+|++ .+|+++ .++.+++|+..      
T Consensus       305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~---~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~------  374 (577)
T 2ymu_A          305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---HLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN------  374 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT------
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC---eeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCC------
Confidence            7999999999999999999999999998755   444556789999999999999 555555 55899999965      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------------eEEeccCCeEEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT----------------PIRRGFGGLSILK  243 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------~~~~~~~~v~~~~  243 (427)
                                       +   ..+..+..| ...|.+++|+|||++++.+.                .+..|...|.+++
T Consensus       375 -----------------~---~~~~~~~~~-~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~  433 (577)
T 2ymu_A          375 -----------------G---QLLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVA  433 (577)
T ss_dssp             -----------------C---CEEEEEECC-SSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEE
T ss_pred             -----------------C---CEEEEecCC-CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEE
Confidence                             1   223344555 77899999999999876432                2345788999999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL  323 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  323 (427)
                      |+|++++|++++.|+.|++||........+..|...|.+++|+|++++|++++. ++.+++|+...+.       .    
T Consensus       434 ~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~-d~~i~iw~~~~~~-------~----  501 (577)
T 2ymu_A          434 FSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWNRNGQL-------L----  501 (577)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSCE-------E----
T ss_pred             ECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCEEEEEcCCCCE-------E----
Confidence            999999999999999999999754444555689999999999999999998754 4478888743321       0    


Q ss_pred             ccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc
Q 014302          324 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP  403 (427)
Q Consensus       324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~  403 (427)
                        .....+...|++++|+|||++||+   ++.|   |.|+|||.. ++++.     .+.+...  ...+++|.|+   |.
T Consensus       502 --~~~~~h~~~v~~l~~s~dg~~l~s---~~~d---g~v~lwd~~-~~~~~-----~~~~h~~--~v~~~~fs~d---g~  562 (577)
T 2ymu_A          502 --QTLTGHSSSVRGVAFSPDGQTIAS---ASDD---KTVKLWNRN-GQLLQ-----TLTGHSS--SVWGVAFSPD---GQ  562 (577)
T ss_dssp             --EEEECCSSCEEEEEECTTSSCEEE---EETT---SEEEEECTT-SCEEE-----EEECCSS--CEEEEEECTT---SS
T ss_pred             --EEEeCCCCCEEEEEEcCCCCEEEE---EECc---CEEEEEeCC-CCEEE-----EEcCCCC--CEEEEEEcCC---CC
Confidence              011224458999999999999998   5566   779999964 44331     2333332  3668999986   66


Q ss_pred             eeEEEeeCceEEEEe
Q 014302          404 LLSVCWSSGFCCTYP  418 (427)
Q Consensus       404 ~l~v~~~~g~i~~~~  418 (427)
                      .|+.+..||.|.+|+
T Consensus       563 ~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          563 TIASASSDKTVKLWN  577 (577)
T ss_dssp             CEEEEETTSCEEEEC
T ss_pred             EEEEEeCCCEEEEeC
Confidence            778888999999986

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=7.3e-29  Score=230.87  Aligned_cols=240  Identities=16%  Similarity=0.277  Sum_probs=174.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++||+|+.|++++||++............+|...|.+++|+|++..+++++.|+.|++|++...     
T Consensus        63 ~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~-----  137 (345)
T 3fm0_A           63 TVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE-----  137 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT-----
T ss_pred             cEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC-----
Confidence            799999999999999999999999999987643345566789999999999999954444456699999999711     


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-------------------eEEeccCCeEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-------------------PIRRGFGGLSI  241 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-------------------~~~~~~~~v~~  241 (427)
                                       ....++..+..| ...|.+++|+|++++++++.                   .+..|...|.+
T Consensus       138 -----------------~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~  199 (345)
T 3fm0_A          138 -----------------DEYECVSVLNSH-TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS  199 (345)
T ss_dssp             -----------------SCEEEEEEECCC-CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             -----------------CCeEEEEEecCc-CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEE
Confidence                             122344445555 78899999999999866432                   13347789999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCccc----------------cc-cCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP----------------WS-STSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~----------------~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                      ++|+|+|++|++++.|++|++||........                .. .|...|.+++|+|++..|++++.++ .+++
T Consensus       200 l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-~i~v  278 (345)
T 3fm0_A          200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD-AIRV  278 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS-CEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC-eEEE
Confidence            9999999999999999999999975432210                11 3788999999999999999876554 8888


Q ss_pred             eeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      |+...........   ..+.......|...|++++|+|++. +||+   ++.|   |+|++|++..++..
T Consensus       279 w~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~laS---~s~D---g~v~~W~~~~~~~~  339 (345)
T 3fm0_A          279 FQEDPNSDPQQPT---FSLTAHLHQAHSQDVNCVAWNPKEPGLLAS---CSDD---GEVAFWKYQRPEGL  339 (345)
T ss_dssp             EEECTTSCTTSCC---EEEEEEETTSSSSCEEEEEECSSSTTEEEE---EETT---SCEEEEEECC----
T ss_pred             EEeCCCCCcceee---EEEEeeecccccCcEeEeEEeCCCceEEEE---cCCC---CcEEEEEecCCCCc
Confidence            8876532110000   0000000113456899999999985 8888   5666   67999999876643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=2.1e-28  Score=249.06  Aligned_cols=273  Identities=14%  Similarity=0.202  Sum_probs=202.5

Q ss_pred             CCCC--ceeeeEEcCCC-CEEEEEeCCCeEEEEEccCCCC---cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302           97 LPEV--DLQGVSWHQHK-HIVAFISGSTQVIVRDYEDSGK---DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g-~~lat~~~d~~v~vwd~~~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw  170 (427)
                      +.+|  .|++++|+|++ ++|++|+.|++|+||++.....   .......+|...|.+++|+|++..+++++.++.|+||
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vw  457 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW  457 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEE
Confidence            3455  89999999976 6999999999999999976521   1234456899999999999999544445567999999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce--------------E----
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP--------------I----  232 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~--------------~----  232 (427)
                      |+.         ++                .....+..| ...|.+++|+|+++++.++..              .    
T Consensus       458 d~~---------~~----------------~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~  511 (694)
T 3dm0_A          458 DLA---------AG----------------VSTRRFVGH-TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE  511 (694)
T ss_dssp             ETT---------TT----------------EEEEEEECC-SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECS
T ss_pred             ECC---------CC----------------cceeEEeCC-CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeecc
Confidence            997         11                344456666 788999999999998664421              1    


Q ss_pred             --EeccCCeEEEEEccCC--CEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302          233 --RRGFGGLSILKWSPTG--DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  307 (427)
Q Consensus       233 --~~~~~~v~~~~~sp~g--~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~  307 (427)
                        ..|...|.+++|+|++  ..|++++.|+.|++||+++.+.. .+..|...|.+++|+|+|++|++++. ++.+++|++
T Consensus       512 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~-Dg~i~iwd~  590 (694)
T 3dm0_A          512 GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK-DGVVLLWDL  590 (694)
T ss_dssp             STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-TSBCEEEET
T ss_pred             CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEEC
Confidence              1256679999999987  57899999999999999988764 44589999999999999999998754 458888888


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeee------
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFI------  381 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~------  381 (427)
                      .....             ...+.....|.+++|+|++.+|+++   .+    +.|+|||++++.++........      
T Consensus       591 ~~~~~-------------~~~~~~~~~v~~~~~sp~~~~l~~~---~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~~  650 (694)
T 3dm0_A          591 AEGKK-------------LYSLEANSVIHALCFSPNRYWLCAA---TE----HGIKIWDLESKSIVEDLKVDLKAEAEKA  650 (694)
T ss_dssp             TTTEE-------------EECCBCSSCEEEEEECSSSSEEEEE---ET----TEEEEEETTTTEEEEEECCCCC------
T ss_pred             CCCce-------------EEEecCCCcEEEEEEcCCCcEEEEE---cC----CCEEEEECCCCCChhhhccccccccccc
Confidence            66421             1112234478999999999999874   22    3499999998876543211000      


Q ss_pred             --eCC----CCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          382 --RGP----GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       382 --~~~----~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                        .++    .......+++|.|+   |..|++|..||.|.+|++
T Consensus       651 ~~~~~~~~~~~~~~~~~l~~spd---g~~l~sgs~Dg~i~iW~i  691 (694)
T 3dm0_A          651 DNSGPAATKRKVIYCTSLNWSAD---GSTLFSGYTDGVIRVWGI  691 (694)
T ss_dssp             ----------CCCCEEEEEECTT---SSEEEEEETTSEEEEEEC
T ss_pred             cccccccCCceeEEeeeEEEcCC---CCEEEEEcCCCeEEEEec
Confidence              000    01112356889886   889999999999999986

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=4.3e-28  Score=233.37  Aligned_cols=306  Identities=12%  Similarity=0.164  Sum_probs=196.8

Q ss_pred             CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC---------cceeeccCCc------------CCeeEEEEccCC--
Q 014302           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK---------DACILTSDSQ------------RDVKVLEWRPNG--  155 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~---------~~~~~~~~~~------------~~v~~l~~sp~~--  155 (427)
                      ...|++++|+|+|++||+|+.||.|+||++.....         .......+|.            ..|++++|+|++  
T Consensus        28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~  107 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA  107 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence            34899999999999999999999999999987621         0234455787            889999999997  


Q ss_pred             CceEEEecCCeEEEEeccCCCCcc---ccc--cCcccccccccCCCC---------cceeEeehhcccCCCceeeeEeCC
Q 014302          156 GRSLSVGCKGGICIWAPSYPGNAA---SVR--SGAASFLGALSRGPG---------TRWTLVDFLRSQNGEQITALSWGP  221 (427)
Q Consensus       156 ~~~la~g~~~~i~iw~~~~~~~~~---~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~v~~~~~sp  221 (427)
                      ..+++++.++.|++|++.......   ...  .+.......+....-         ........+...+...|.+++|+|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            456777778999999986210000   000  000000000000000         000111122223378899999999


Q ss_pred             CCCCcccCc--------------eE----------EeccCCeEEEEEccCC-CEEEEEecCCcEEEEEcCCCCc-----c
Q 014302          222 DGRFPGLGT--------------PI----------RRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWTS-----E  271 (427)
Q Consensus       222 dg~~l~~~~--------------~~----------~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~-----~  271 (427)
                      +|++++++.              .+          ..|...|.+++|+|++ ++|++++.||.|++||+++.+.     .
T Consensus       188 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  267 (447)
T 3dw8_B          188 DYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSK  267 (447)
T ss_dssp             TSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCE
T ss_pred             CCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceee
Confidence            999865431              11          1466789999999999 8999999999999999998875     2


Q ss_pred             ccccCCC------------CeeEEEECCCCCEEEEEEcCCceeeeeeeCC-CC--CCccccccccccccceeeccCC---
Q 014302          272 PWSSTSG------------FVTGATWDPEGRMILLAFAGSLTLGSIHFAS-KP--PSLDAHLLPVDLPDIVSLTGSQ---  333 (427)
Q Consensus       272 ~~~~~~~------------~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~---  333 (427)
                      .+..+..            .|.+++|+|+|++|++++.  +.+++|++.. ..  ..+.+|.....  .........   
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~i~  343 (447)
T 3dw8_B          268 LFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHEYLRS--KLCSLYENDCIF  343 (447)
T ss_dssp             EECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESCGGGTT--THHHHHHTSGGG
T ss_pred             EeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeeccccccc--cccccccccccc
Confidence            2334554            8999999999999997755  6899998875 32  23333322110  000000001   


Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee-------------ee------------eCCCCCC
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-------------FI------------RGPGDNP  388 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~-------------~~------------~~~~~~~  388 (427)
                      .+..++|+|++++|++   ++.|   |.|++||+.++..+.+....             ..            .......
T Consensus       344 ~~~~~~~s~~~~~l~s---~s~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (447)
T 3dw8_B          344 DKFECCWNGSDSVVMT---GSYN---NFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNK  417 (447)
T ss_dssp             CCCCEEECTTSSEEEE---ECST---TEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTS
T ss_pred             cceEEEECCCCCEEEE---eccC---CEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCC
Confidence            2445999999999988   6777   77999999998876433110             00            0001123


Q ss_pred             CceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          389 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       389 ~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      ....++|+|+   +.+|+++.+++ +.+|.
T Consensus       418 ~i~~~~~~p~---~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          418 KILHTAWHPK---ENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             CCCEEEECSS---SSEEEEECSSC-EEEEE
T ss_pred             ceeEEEECCC---CCEEEEEecce-eeeec
Confidence            4567999997   78899997665 55554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=5.5e-29  Score=237.28  Aligned_cols=221  Identities=16%  Similarity=0.305  Sum_probs=176.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++|+.|++|+|||+...  .......+|...|.+++|+|++..+++++.|+.|++||+.       
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-------  222 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGF--ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-------  222 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSS--CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-------
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-------
Confidence            7999999999999999999999999999876  4556667899999999999999555556667999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~  243 (427)
                        ++                .++..+..| ...|.++.|+|+|++++++.                 .+..|...|.+++
T Consensus       223 --~~----------------~~~~~~~~h-~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~  283 (410)
T 1vyh_C          223 --TG----------------YCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS  283 (410)
T ss_dssp             --TC----------------CEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             --CC----------------cEEEEEeCC-CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEE
Confidence              22                344555665 77899999999999865442                 1345778899999


Q ss_pred             EccC--------------------CCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCcee
Q 014302          244 WSPT--------------------GDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTL  302 (427)
Q Consensus       244 ~sp~--------------------g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i  302 (427)
                      |+|+                    |.+|++|+.|+.|++||++++.+. .+.+|...|.+++|+|+|++|++++ .++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~i  362 (410)
T 1vyh_C          284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA-DDKTL  362 (410)
T ss_dssp             ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE-TTTEE
T ss_pred             EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe-CCCeE
Confidence            9996                    678999999999999999988774 4458999999999999999999765 45588


Q ss_pred             eeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          303 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      ++|++......            .....+...|++++|+|++.+||+   ++.|   ++|+||+++
T Consensus       363 ~vwd~~~~~~~------------~~~~~h~~~v~~l~~~~~~~~l~s---gs~D---~~i~vW~~r  410 (410)
T 1vyh_C          363 RVWDYKNKRCM------------KTLNAHEHFVTSLDFHKTAPYVVT---GSVD---QTVKVWECR  410 (410)
T ss_dssp             EEECCTTSCCC------------EEEECCSSCEEEEEECSSSSCEEE---EETT---SEEEEEC--
T ss_pred             EEEECCCCceE------------EEEcCCCCcEEEEEEcCCCCEEEE---EeCC---CcEEEEeCC
Confidence            88887654210            011124458999999999999998   6666   779999863

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=1.4e-28  Score=226.09  Aligned_cols=252  Identities=13%  Similarity=0.122  Sum_probs=178.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC--CCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|++++|+|+|++||+|+.|++|+|||+..+.........+|...|.+++|+|+  +..+++++.|++|++|++.     
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~-----   89 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE-----   89 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS-----
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC-----
Confidence            799999999999999999999999999987622234455689999999999863  6444445567999999987     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC--CCEEEEEec
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT--GDYFFAAKF  256 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~  256 (427)
                          .+              .+....                          .+..|...|.+++|+|+  +.+|++++.
T Consensus        90 ----~~--------------~~~~~~--------------------------~~~~h~~~V~~v~~~p~~~g~~lasgs~  125 (316)
T 3bg1_A           90 ----NG--------------TWEKSH--------------------------EHAGHDSSVNSVCWAPHDYGLILACGSS  125 (316)
T ss_dssp             ----SS--------------CCCEEE--------------------------EECCCSSCCCEEEECCTTTCSCEEEECS
T ss_pred             ----CC--------------cceEEE--------------------------EccCCCCceEEEEECCCCCCcEEEEEcC
Confidence                11              101111                          12346678899999998  789999999


Q ss_pred             CCcEEEEEcCCCCc----cccccCCCCeeEEEECCC-----------------CCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          257 DGTFYLWETNTWTS----EPWSSTSGFVTGATWDPE-----------------GRMILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       257 dg~v~iwd~~~~~~----~~~~~~~~~v~~v~~spd-----------------g~~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      |+.|++||++....    .....|...+.+++|+|+                 +++|+++ +.++.+++|++..... + 
T Consensus       126 D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~D~~v~lWd~~~~~~-~-  202 (316)
T 3bg1_A          126 DGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-GCDNLIKLWKEEEDGQ-W-  202 (316)
T ss_dssp             SSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC-BTTSBCCEEEECTTSC-E-
T ss_pred             CCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe-cCCCeEEEEEeCCCCc-c-
Confidence            99999999987642    233478889999999998                 3567765 5566888898854210 0 


Q ss_pred             ccccccccccceeeccCCceeEEEECCCC----CEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCce
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV  391 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g----~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  391 (427)
                         ...    .....|...|.+++|+|++    ++||+   ++.|   ++|+||++.....-... ...+...  .....
T Consensus       203 ---~~~----~~l~~h~~~V~~v~~sp~~~~~~~~las---~s~D---~~v~iw~~~~~~~~~~~-~~~~~~~--~~~v~  266 (316)
T 3bg1_A          203 ---KEE----QKLEAHSDWVRDVAWAPSIGLPTSTIAS---CSQD---GRVFIWTCDDASSNTWS-PKLLHKF--NDVVW  266 (316)
T ss_dssp             ---EEE----ECCBCCSSCEEEEECCCCSSCSCCEEEE---EETT---CEEEEEECSSTTCCCCB-CCEEEEC--SSCEE
T ss_pred             ---cee----eecccCCCceEEEEecCCCCCCCceEEE---EcCC---CeEEEEEccCccccchh-hhhhhcC--CCcEE
Confidence               000    0011244589999999987    78988   5666   77999999762110000 0011111  22366


Q ss_pred             eEEeccCCCCCceeEEEeeCceEEEEeccccC
Q 014302          392 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  423 (427)
Q Consensus       392 ~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~  423 (427)
                      +++|.|+   +.+|++|..||.|.+|+.-...
T Consensus       267 ~v~~sp~---g~~las~~~D~~v~lw~~~~~g  295 (316)
T 3bg1_A          267 HVSWSIT---ANILAVSGGDNKVTLWKESVDG  295 (316)
T ss_dssp             EEEECTT---TCCEEEEESSSCEEEEEECTTS
T ss_pred             EEEEcCC---CCEEEEEcCCCeEEEEEECCCC
Confidence            8999986   7789999999999999975443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=3.9e-28  Score=227.69  Aligned_cols=275  Identities=12%  Similarity=0.161  Sum_probs=197.7

Q ss_pred             CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      ...|++++|+|++++||+++.|+.|+||++.............|...|.+++|+|++..+++++.++.|++|++.     
T Consensus         8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-----   82 (372)
T 1k8k_C            8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-----   82 (372)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-----
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC-----
Confidence            347999999999999999999999999999877222555556799999999999999545555566999999997     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------------E----EeccC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------------I----RRGFG  237 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------------~----~~~~~  237 (427)
                          .+              +......+..+ ...|.+++|+|++++++.+..                 .    ..|..
T Consensus        83 ----~~--------------~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~  143 (372)
T 1k8k_C           83 ----GR--------------TWKPTLVILRI-NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS  143 (372)
T ss_dssp             ----TT--------------EEEEEEECCCC-SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             ----CC--------------eeeeeEEeecC-CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence                11              22222223333 778999999999987553311                 1    12567


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcC------------------CCCc-cccccCCCCeeEEEECCCCCEEEEEEcC
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETN------------------TWTS-EPWSSTSGFVTGATWDPEGRMILLAFAG  298 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~------------------~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~  298 (427)
                      .+.+++|+|++++|++++.|+.|++||++                  .++. ..+..|...+.+++|+|++++|++++ .
T Consensus       144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~  222 (372)
T 1k8k_C          144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-H  222 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-T
T ss_pred             CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-C
Confidence            89999999999999999999999999965                  2333 23337888999999999999999875 4


Q ss_pred             CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc--CceEEEe
Q 014302          299 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR--TPLISLS  376 (427)
Q Consensus       299 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~--~~~~~~~  376 (427)
                      ++.+++|++......            .....+...|.+++|+|++++|++   + .|   +.|++|++..  +......
T Consensus       223 d~~i~i~d~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~~---~-~d---~~i~i~~~~~~~~~~~~~~  283 (372)
T 1k8k_C          223 DSTVCLADADKKMAV------------ATLASETLPLLAVTFITESSLVAA---G-HD---CFPVLFTYDSAAGKLSFGG  283 (372)
T ss_dssp             TTEEEEEEGGGTTEE------------EEEECSSCCEEEEEEEETTEEEEE---E-TT---SSCEEEEEETTTTEEEECC
T ss_pred             CCEEEEEECCCCcee------------EEEccCCCCeEEEEEecCCCEEEE---E-eC---CeEEEEEccCcCceEEEee
Confidence            558888888654210            011123348999999999998887   4 34   5599999987  4321110


Q ss_pred             -----------------------ee----------eeeeCCCCCCCceeEEeccCCCCC---ceeEEEeeCceEEEEecc
Q 014302          377 -----------------------LI----------GFIRGPGDNPKPVAFSFHDKFKQG---PLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       377 -----------------------~~----------~~~~~~~~~~~~~~~~f~~~~~~g---~~l~v~~~~g~i~~~~~~  420 (427)
                                             ..          ..+. .+......+++|++.  +|   .+|+.|..||.|.+|++-
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          284 RLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSG--GKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             CCCCC--------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEES--TTTSCSEEEEEETTSEEEEEEHH
T ss_pred             ccCccccchhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecC--CCcceeeEEEecCCCceEEEEec
Confidence                                   00          1111 122234667887754  34   789999999999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.96  E-value=7.3e-28  Score=223.96  Aligned_cols=236  Identities=13%  Similarity=0.208  Sum_probs=169.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++.+|++++.|++|+|||+..+  .......+|...|.+++|+|++..+++++.++.|++|++.       
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~--~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-------  148 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTG--TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-------  148 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSS--CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-------
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCC--cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-------
Confidence            7999999999999999999999999999877  4555567899999999999999656666677999999986       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC----------CcccC----------------ceEEe
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR----------FPGLG----------------TPIRR  234 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~----------~l~~~----------------~~~~~  234 (427)
                                      +...........+ ...|.+++|+|++.          +++++                ..+..
T Consensus       149 ----------------~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  211 (343)
T 2xzm_R          149 ----------------GECKFSSAEKENH-SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA  211 (343)
T ss_dssp             ----------------SCEEEECCTTTSC-SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEEC
T ss_pred             ----------------CCceeeeecccCC-CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcC
Confidence                            0011111112233 67789999999873          33322                12455


Q ss_pred             ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302          235 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  313 (427)
Q Consensus       235 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~  313 (427)
                      |...|.+++|+|+|++|++++.|+.|++||++.... .....+...|.+++|+|++++++++ .++ .+++|++......
T Consensus       212 h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~-~v~iw~~~~~~~~  289 (343)
T 2xzm_R          212 HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQ-GVKIFNLMTQSKA  289 (343)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESS-CEEEEESSSCCSC
T ss_pred             ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCC-CEEEEEeCCCCCC
Confidence            888999999999999999999999999999955443 3333456679999999999988754 343 6888887654221


Q ss_pred             ccccccccccccce-eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          314 LDAHLLPVDLPDIV-SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       314 ~~~~~~~~~~~~~~-~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      .............. ...+...|.+++|+|+|++||+   ++.|   |+|++|+++++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~s---g~~D---g~v~~w~~~~g  341 (343)
T 2xzm_R          290 PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFA---GFTD---GVIRTFSFETS  341 (343)
T ss_dssp             SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEE---EETT---SEEEEEEEEEE
T ss_pred             ceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEE---ecCC---ceEEEEEEEcc
Confidence            00000000000000 1123457999999999999999   6666   77999998754

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.96  E-value=2.7e-28  Score=224.52  Aligned_cols=227  Identities=15%  Similarity=0.168  Sum_probs=169.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++|+.|++|+|||+..+  .......+|...|.+++|+|++..+++++.|+.|++|++.       
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-------  137 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATG--ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-------  137 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-------
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCC--CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-------
Confidence            7999999999999999999999999999887  5556667899999999999999555555566999999986       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC------CcccC--------------c---eEEeccC
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR------FPGLG--------------T---PIRRGFG  237 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~------~l~~~--------------~---~~~~~~~  237 (427)
                                      +   .++..+..| ...|.++.|+|.+.      .+.++              .   .+..|..
T Consensus       138 ----------------~---~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~  197 (319)
T 3frx_A          138 ----------------G---QCLATLLGH-NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS  197 (319)
T ss_dssp             ----------------S---CEEEEECCC-SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS
T ss_pred             ----------------C---CeEEEEecc-CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC
Confidence                            1   123334444 67788888888543      22221              1   1345788


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccc
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLD  315 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~  315 (427)
                      .|.+++|+|+|++|++++.||.|++||+++.+......+...+.+++|+|++.+|+++.. + .+.+|.+.....  .+.
T Consensus       198 ~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-~-~i~v~~~~~~~~~~~~~  275 (319)
T 3frx_A          198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-T-GIKVFSLDPQYLVDDLR  275 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET-T-EEEEEEETTEEEEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-C-CcEEEEeCcCeeeeccC
Confidence            999999999999999999999999999998877555556678999999999999987654 3 466666654210  000


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      .+..      .....+...+.+++|+|||++|++   ++.|   ++|+|||+.+.
T Consensus       276 ~~~~------~~~~~~~~~v~~~~~spdg~~l~s---g~~D---g~i~vWd~~t~  318 (319)
T 3frx_A          276 PEFA------GYSKAAEPHAVSLAWSADGQTLFA---GYTD---NVIRVWQVMTA  318 (319)
T ss_dssp             CCCT------TCCGGGCCCEEEEEECTTSSEEEE---EETT---SCEEEEEEEEC
T ss_pred             cccc------ccccCcCcceeEEEECCCCCEEEE---eecC---ceEEEEEEeec
Confidence            0000      001123347899999999999998   5666   66999999764

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.96  E-value=4.3e-28  Score=225.24  Aligned_cols=220  Identities=12%  Similarity=0.146  Sum_probs=172.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC--cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|.+++|+|++++||+|+.|+.|++|++.....  .......+|...|.++.|++++ .+++++.++.|++||+.     
T Consensus        99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~-----  172 (340)
T 1got_B           99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIE-----  172 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETT-----
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECC-----
Confidence            699999999999999999999999999987522  2233456799999999999998 67777788999999997     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~  241 (427)
                          ++                .....+..| ...|.+++|+|++++++++.                 .+..|...|.+
T Consensus       173 ----~~----------------~~~~~~~~h-~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~  231 (340)
T 1got_B          173 ----TG----------------QQTTTFTGH-TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA  231 (340)
T ss_dssp             ----TT----------------EEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred             ----CC----------------cEEEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEE
Confidence                22                344455555 78899999999998865432                 13457789999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  318 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  318 (427)
                      ++|+|++++|++++.|+.|++||+++.+.....   .+...|.+++|+|+|++|++++. ++.+++|++......     
T Consensus       232 v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~-----  305 (340)
T 1got_B          232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRA-----  305 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEE-----
T ss_pred             EEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC-CCeEEEEEcccCcEe-----
Confidence            999999999999999999999999987653332   33457999999999999998754 458888887654210     


Q ss_pred             cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                             .....+.+.|.+++|+|+|++||+   ++.|   ++|+|||
T Consensus       306 -------~~~~~h~~~v~~~~~s~dg~~l~s---~s~D---~~i~iWd  340 (340)
T 1got_B          306 -------GVLAGHDNRVSCLGVTDDGMAVAT---GSWD---SFLKIWN  340 (340)
T ss_dssp             -------EEEECCSSCEEEEEECTTSSCEEE---EETT---SCEEEEC
T ss_pred             -------eEeecCCCcEEEEEEcCCCCEEEE---EcCC---ccEEecC
Confidence                   011224458999999999999999   5666   6699996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.1e-28  Score=232.21  Aligned_cols=230  Identities=13%  Similarity=0.233  Sum_probs=166.0

Q ss_pred             CCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302           99 EVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      ...|++++|+|++++||+++.|+.|+||++............+|...|.+++|+|++..+++++.++.|++|++..    
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~----   86 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP----   86 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--------
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC----
Confidence            3479999999999999999999999999998752234445567999999999999995555555679999999971    


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------------eEEe-ccC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------------PIRR-GFG  237 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------------~~~~-~~~  237 (427)
                           +             ..+.....+..| ...|.+++|+|++++++.+.                    .+.. |..
T Consensus        87 -----~-------------~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  147 (377)
T 3dwl_C           87 -----D-------------GTWKQTLVLLRL-NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS  147 (377)
T ss_dssp             --------------------CCCCEEECCCC-SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred             -----C-------------CceeeeeEeccc-CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence                 1             001223334444 78899999999998865331                    1233 778


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCC------------------c-cccccCCCCeeEEEECCCCCEEEEEEcC
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWT------------------S-EPWSSTSGFVTGATWDPEGRMILLAFAG  298 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~------------------~-~~~~~~~~~v~~v~~spdg~~l~~~~~~  298 (427)
                      .|.+++|+|++++|++++.|+.|++||++...                  . ..+ .|...|.+++|+|+|++|++++. 
T Consensus       148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-  225 (377)
T 3dwl_C          148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH-  225 (377)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET-
T ss_pred             CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC-
Confidence            89999999999999999999999999996432                  1 122 78889999999999999998754 


Q ss_pred             CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          299 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       299 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      ++.+++|++........  .  +    .....+...|.+++|+|+|++|++   ++++   + +.+|+..
T Consensus       226 d~~i~iwd~~~~~~~~~--~--~----~~~~~~~~~v~~~~~s~~~~~l~~---~~~~---~-~~~~~~~  280 (377)
T 3dwl_C          226 DSSVTIAYPSAPEQPPR--A--L----ITVKLSQLPLRSLLWANESAIVAA---GYNY---S-PILLQGN  280 (377)
T ss_dssp             TTEEC-CEECSTTSCEE--E--C----CCEECSSSCEEEEEEEETTEEEEE---ESSS---S-EEEECCC
T ss_pred             CCcEEEEECCCCCCcce--e--e----EeecCCCCceEEEEEcCCCCEEEE---EcCC---c-EEEEEeC
Confidence            45888888876532000  0  0    111123447999999999999988   4444   3 5577765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.2e-28  Score=229.90  Aligned_cols=272  Identities=13%  Similarity=0.185  Sum_probs=197.5

Q ss_pred             ceeeeEEcCCCC-EEEEE----------eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEE
Q 014302          101 DLQGVSWHQHKH-IVAFI----------SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI  169 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~----------~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~i  169 (427)
                      .|.+++|+|+++ +||++          +.|+.|+||++.............|...|.+++|+|++..+++++.++.|++
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v   93 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL   93 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence            688999999997 99999          8899999999987632223333468889999999999954444446699999


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC-CCCcccC--------------c----
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRFPGLG--------------T----  230 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~--------------~----  230 (427)
                      |++.....                     .......+..| ...|.+++|+|+ +++++++              .    
T Consensus        94 w~~~~~~~---------------------~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  151 (416)
T 2pm9_A           94 YSTNEANN---------------------AINSMARFSNH-SSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS  151 (416)
T ss_dssp             ECCSSTTS---------------------CCCEEEECCCS-SSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred             eecccccc---------------------cccchhhccCC-ccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence            99971000                     01234445555 788999999998 6664322              1    


Q ss_pred             ---e-----EEeccCCeEEEEEccC-CCEEEEEecCCcEEEEEcCCCCccccc-cC------CCCeeEEEECCCCC-EEE
Q 014302          231 ---P-----IRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWS-ST------SGFVTGATWDPEGR-MIL  293 (427)
Q Consensus       231 ---~-----~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~------~~~v~~v~~spdg~-~l~  293 (427)
                         .     ...|...+.+++|+|+ +.+|++++.|+.|++||+++.+..... .+      ...+.+++|+|++. +++
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence               1     1236678999999999 688999999999999999987763332 22      78899999999985 565


Q ss_pred             EEEcCCc---eeeeeeeCCCCCCccccccccccccceee-ccCCceeEEEECC-CCCEEEEEEecCCCcceeEEEEEEec
Q 014302          294 LAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       294 ~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~sp-~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      ++ ..++   .+++|++.......           .... .+...|.+++|+| ++++|++   ++.|   ++|++||++
T Consensus       232 ~~-~~d~~~~~i~~~d~~~~~~~~-----------~~~~~~~~~~v~~~~~s~~~~~~l~s---~~~d---g~v~~wd~~  293 (416)
T 2pm9_A          232 TA-TGSDNDPSILIWDLRNANTPL-----------QTLNQGHQKGILSLDWCHQDEHLLLS---SGRD---NTVLLWNPE  293 (416)
T ss_dssp             EE-ECCSSSCCCCEEETTSTTSCS-----------BCCCSCCSSCEEEEEECSSCSSCEEE---EESS---SEEEEECSS
T ss_pred             EE-ECCCCCceEEEEeCCCCCCCc-----------EEeecCccCceeEEEeCCCCCCeEEE---EeCC---CCEEEeeCC
Confidence            54 5555   88888887642110           0011 2345899999999 9999998   5555   679999999


Q ss_pred             cCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          369 RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      ++..+..     +.+...  ...+++|.|+  ...+|+++..||.|.+|++.-
T Consensus       294 ~~~~~~~-----~~~~~~--~v~~~~~s~~--~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          294 SAEQLSQ-----FPARGN--WCFKTKFAPE--APDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             SCCEEEE-----EECSSS--CCCCEEECTT--CTTEEEECCSSSEEEEEESCC
T ss_pred             CCcccee-----ecCCCC--ceEEEEECCC--CCCEEEEEecCCcEEEEEccC
Confidence            8876532     223222  2558999996  227899999999999999753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.1e-27  Score=228.44  Aligned_cols=268  Identities=16%  Similarity=0.260  Sum_probs=194.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++++.|+.|+||+...   ........|...|.+++|+|++..+++++.++.+++|++..      
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~------  180 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTG---ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS------  180 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTS---CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT------
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCC---CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC------
Confidence            799999999999999999999999999332   35555667999999999999996566666679999999971      


Q ss_pred             cccCcccccccccCCCCcceeEeehhccc--------------CCCceeeeEeCCCCCCcccC----------------c
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQ--------------NGEQITALSWGPDGRFPGLG----------------T  230 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~spdg~~l~~~----------------~  230 (427)
                         +                .....+..+              ....+.+++|+|++.++..+                .
T Consensus       181 ---~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~  241 (425)
T 1r5m_A          181 ---G----------------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG  241 (425)
T ss_dssp             ---T----------------EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSE
T ss_pred             ---C----------------cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceee
Confidence               1                111112211              01227788888876653211                1


Q ss_pred             eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          231 PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       231 ~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      .+..|...+.+++|+|++++|++++.|+.|++||+++.+... +..|...+.+++|+|++ ++++++ .++.+++|++..
T Consensus       242 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-~d~~i~i~d~~~  319 (425)
T 1r5m_A          242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCS-MDGSVRLWSLKQ  319 (425)
T ss_dssp             EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEE-TTSEEEEEETTT
T ss_pred             eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEe-CCCcEEEEECCC
Confidence            234577899999999999999999999999999999877643 34788999999999999 776654 555888888765


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE---------------E
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI---------------S  374 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~---------------~  374 (427)
                      ....            .....+...|.+++|+|++++|++   ++.|   |.|++||+.++...               .
T Consensus       320 ~~~~------------~~~~~~~~~i~~~~~s~~~~~l~~---~~~d---g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~  381 (425)
T 1r5m_A          320 NTLL------------ALSIVDGVPIFAGRISQDGQKYAV---AFMD---GQVNVYDLKKLNSKSRSLYGNRDGILNPLP  381 (425)
T ss_dssp             TEEE------------EEEECTTCCEEEEEECTTSSEEEE---EETT---SCEEEEECHHHHC--------------CEE
T ss_pred             CcEe------------EecccCCccEEEEEEcCCCCEEEE---EECC---CeEEEEECCCCccceeeeecccccccCccc
Confidence            4110            011123458999999999999999   4445   56999999876510               0


Q ss_pred             EeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          375 LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ..+...+.+........+++|.|+   +..|+++..+|.|.+|++
T Consensus       382 ~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          382 IPLYASYQSSQDNDYIFDLSWNCA---GNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             CCEEEEECCTTCCCCEEEEEECTT---SSEEEEEESSSCCEEEEC
T ss_pred             chhhhhhcCcccCCceEEEEccCC---CceEEEEecCceEEEEee
Confidence            002223333322114778999986   678999999999999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-27  Score=222.85  Aligned_cols=251  Identities=15%  Similarity=0.178  Sum_probs=183.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC--CCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|++++|+|++++||+|+.|+.|+||++............+|...|++++|+|+  +..+++++.++.|++|++.     
T Consensus        13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-----   87 (379)
T 3jrp_A           13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-----   87 (379)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE-----
T ss_pred             cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC-----
Confidence            799999999999999999999999999985533455566789999999999977  7444444556999999997     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC--CCEEEEEec
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT--GDYFFAAKF  256 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~  256 (427)
                          .+              .+....                          .+..|...+.+++|+|+  +++|++++.
T Consensus        88 ----~~--------------~~~~~~--------------------------~~~~~~~~v~~~~~~~~~~~~~l~~~~~  123 (379)
T 3jrp_A           88 ----NG--------------RWSQIA--------------------------VHAVHSASVNSVQWAPHEYGPLLLVASS  123 (379)
T ss_dssp             ----TT--------------EEEEEE--------------------------EECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             ----CC--------------ceeEee--------------------------eecCCCcceEEEEeCCCCCCCEEEEecC
Confidence                11              111111                          22335678999999999  999999999


Q ss_pred             CCcEEEEEcCCCCcc---ccccCCCCeeEEEECC-------------CCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302          257 DGTFYLWETNTWTSE---PWSSTSGFVTGATWDP-------------EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       257 dg~v~iwd~~~~~~~---~~~~~~~~v~~v~~sp-------------dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      |+.|++||++.....   ....|...|.+++|+|             ++.++++++. ++.+++|++.........    
T Consensus       124 d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~----  198 (379)
T 3jrp_A          124 DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVL----  198 (379)
T ss_dssp             TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEET-TSCEEEEEEETTTTEEEE----
T ss_pred             CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeC-CCeEEEEEecCCCcceee----
Confidence            999999999887542   3337899999999999             6888887755 458888888754211000    


Q ss_pred             cccccceeeccCCceeEEEECCC---CCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~---g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                          ......+...|.+++|+|+   +++|++   ++.|   |.|++||+..+......  .............+++|.|
T Consensus       199 ----~~~~~~h~~~v~~~~~sp~~~~~~~l~s---~~~d---g~i~iwd~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~  266 (379)
T 3jrp_A          199 ----ESTLEGHSDWVRDVAWSPTVLLRSYLAS---VSQD---RTCIIWTQDNEQGPWKK--TLLKEEKFPDVLWRASWSL  266 (379)
T ss_dssp             ----EEEECCCSSCEEEEEECCCCSSSEEEEE---EETT---SCEEEEEESSTTSCCEE--EESSSSCCSSCEEEEEECS
T ss_pred             ----EEEEecccCcEeEEEECCCCCCCCeEEE---EeCC---CEEEEEeCCCCCcccee--eeeccccCCCcEEEEEEcC
Confidence                0011124458999999999   889988   4555   66999999886421110  0111112223466899998


Q ss_pred             CCCCCceeEEEeeCceEEEEecc
Q 014302          398 KFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       398 ~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      +   |..|+++..+|.|.+|++-
T Consensus       267 ~---g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          267 S---GNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             S---SCCEEEEESSSSEEEEEEE
T ss_pred             C---CCEEEEecCCCcEEEEeCC
Confidence            6   7789999999999999975

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.96  E-value=2.9e-27  Score=223.95  Aligned_cols=289  Identities=15%  Similarity=0.107  Sum_probs=197.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC----CcceeeccCCcCCeeEEEEccC----C---CceEEEecCCeEEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG----KDACILTSDSQRDVKVLEWRPN----G---GRSLSVGCKGGICI  169 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~v~~l~~sp~----~---~~~la~g~~~~i~i  169 (427)
                      .|++++|+|  ++|++++.|++|+||++....    .........|...|.+++|+|+    +   ..+++++.++.|++
T Consensus        18 ~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i   95 (397)
T 1sq9_A           18 DIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF   95 (397)
T ss_dssp             CEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred             CeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence            899999999  899999999999999998873    1245555689999999999999    7   66666677899999


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccC----CCceeeeEeC----CCCCC-cccCc----------
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN----GEQITALSWG----PDGRF-PGLGT----------  230 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~s----pdg~~-l~~~~----------  230 (427)
                      |++.....                    ........+..+.    ...|.+++|+    |++++ ++.+.          
T Consensus        96 w~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~  155 (397)
T 1sq9_A           96 YRITREDE--------------------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF  155 (397)
T ss_dssp             EEEEECTT--------------------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred             EEccCCcc--------------------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence            99971100                    0000122233332    3789999999    88887 54321          


Q ss_pred             ------------------eEE-------eccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-ccc---C---CC
Q 014302          231 ------------------PIR-------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSS---T---SG  278 (427)
Q Consensus       231 ------------------~~~-------~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~---~---~~  278 (427)
                                        .+.       .|...+.+++|+|++ +|++++.|+.|++||+++.+... +..   |   ..
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~  234 (397)
T 1sq9_A          156 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN  234 (397)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred             CccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCC
Confidence                              121       146678999999999 99999999999999999877643 335   7   89


Q ss_pred             CeeEEEECCCCCEEEEEEcCC--ceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecC
Q 014302          279 FVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG  354 (427)
Q Consensus       279 ~v~~v~~spdg~~l~~~~~~~--~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~  354 (427)
                      .+.+++|+|++++|++++.++  +.+++|++.....  .+.+...+. ........+...|.+++|+|++++|++   ++
T Consensus       235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~  310 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSS-QASLGEFAHSSWVMSLSFNDSGETLCS---AG  310 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC---------CCBSBSSCEEEEEECSSSSEEEE---EE
T ss_pred             ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccc-cccccccccCCcEEEEEECCCCCEEEE---Ee
Confidence            999999999999999876551  5788888765421  111100000 000001114568999999999999998   45


Q ss_pred             CCcceeEEEEEEeccCceEEEeeeeeee-CC--------C-----CCCCceeEEeccCCC-------CCceeEEEeeCce
Q 014302          355 DDIYKGLIAIYDARRTPLISLSLIGFIR-GP--------G-----DNPKPVAFSFHDKFK-------QGPLLSVCWSSGF  413 (427)
Q Consensus       355 ~d~~~g~i~vwd~~~~~~~~~~~~~~~~-~~--------~-----~~~~~~~~~f~~~~~-------~g~~l~v~~~~g~  413 (427)
                      .|   |.|++||++++..+......... +.        .     ......+++|.|+..       .+.+|++|..||.
T Consensus       311 ~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~  387 (397)
T 1sq9_A          311 WD---GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRS  387 (397)
T ss_dssp             TT---SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTE
T ss_pred             CC---CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCc
Confidence            55   77999999988765333210000 11        0     033467899998721       1168999999999


Q ss_pred             EEEEec
Q 014302          414 CCTYPL  419 (427)
Q Consensus       414 i~~~~~  419 (427)
                      |.+|++
T Consensus       388 i~iw~~  393 (397)
T 1sq9_A          388 IRWFRE  393 (397)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999986

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-27  Score=228.41  Aligned_cols=282  Identities=13%  Similarity=0.138  Sum_probs=195.7

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCC
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPG  176 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~  176 (427)
                      ..|++++|+|++++|++++.|+.|+||++...  ..........|...|++++|+|++..+|+++ .++.|++|++....
T Consensus        68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             CceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            47999999999999999999999999999873  1235556677999999999999943666665 45999999997211


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCC-CCCcccCc--------------e---EEec---
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPD-GRFPGLGT--------------P---IRRG---  235 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~--------------~---~~~~---  235 (427)
                      ....                .........+..+ ...|.+++|+|+ +.+++++.              .   +..+   
T Consensus       148 ~~~~----------------~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  210 (416)
T 2pm9_A          148 ESPS----------------NYTPLTPGQSMSS-VDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN  210 (416)
T ss_dssp             SCTT----------------TCCCBCCCCSCCS-SCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS
T ss_pred             cccc----------------cccccccccccCC-CCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc
Confidence            0000                0000011112333 678999999998 55544321              1   1122   


Q ss_pred             ---cCCeEEEEEccCC-CEEEEEecCC---cEEEEEcCCCC-c-cccc-cCCCCeeEEEECC-CCCEEEEEEcCCceeee
Q 014302          236 ---FGGLSILKWSPTG-DYFFAAKFDG---TFYLWETNTWT-S-EPWS-STSGFVTGATWDP-EGRMILLAFAGSLTLGS  304 (427)
Q Consensus       236 ---~~~v~~~~~sp~g-~~l~~~~~dg---~v~iwd~~~~~-~-~~~~-~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~  304 (427)
                         ...+.+++|+|++ .+|++++.|+   .|++||+++.. . ..+. .|...|.+++|+| ++++|++++. ++.+++
T Consensus       211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~-dg~v~~  289 (416)
T 2pm9_A          211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR-DNTVLL  289 (416)
T ss_dssp             SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEES-SSEEEE
T ss_pred             cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeC-CCCEEE
Confidence               5779999999998 5788999998   99999999864 3 3444 6899999999999 8899887754 457888


Q ss_pred             eeeCCCCCCccccccccccccceeeccCCceeEEEECCCC-CEEEEEEecCCCcceeEEEEEEeccCceEEEe-------
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG-ERLAVSYKGGDDIYKGLIAIYDARRTPLISLS-------  376 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g-~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~-------  376 (427)
                      |++......            .....+.+.|.+++|+|++ ++|++   ++.|   +.|++|++.........       
T Consensus       290 wd~~~~~~~------------~~~~~~~~~v~~~~~s~~~~~~l~s---~~~d---~~i~iw~~~~~~~~~~~~~~~~~~  351 (416)
T 2pm9_A          290 WNPESAEQL------------SQFPARGNWCFKTKFAPEAPDLFAC---ASFD---NKIEVQTLQNLTNTLDEQETETKQ  351 (416)
T ss_dssp             ECSSSCCEE------------EEEECSSSCCCCEEECTTCTTEEEE---CCSS---SEEEEEESCCCCCSSCC-------
T ss_pred             eeCCCCccc------------eeecCCCCceEEEEECCCCCCEEEE---EecC---CcEEEEEccCCCCCcccccccccc
Confidence            877654210            0111234588999999999 78888   7777   77999999875432110       


Q ss_pred             ---eeeee-----------------eCCCCCCCce-eEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          377 ---LIGFI-----------------RGPGDNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       377 ---~~~~~-----------------~~~~~~~~~~-~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                         +..+.                 ..+.....++ +++|.|+   |.+|+++..||.|.+|++-
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d---g~~la~~~~d~~v~~w~~~  413 (416)
T 2pm9_A          352 QESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFG---GKLVQITPDGKGVSITNPK  413 (416)
T ss_dssp             ---------------CCSCCCSSCCCCCSTTCCCSCCCEEETT---TEEECBCTTSSCBCCBCCC
T ss_pred             cCCcccccccccccccccccccccccCCccccCCccceEEeeC---CeEEEEeCCCCeEEEEEec
Confidence               00000                 0011122233 7888886   8899999999999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=2.5e-26  Score=212.56  Aligned_cols=265  Identities=15%  Similarity=0.171  Sum_probs=181.8

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC--cceeeccCCcCCeeEEEEcc--CCCceEEEecCCeEE
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGIC  168 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~v~~l~~sp--~~~~~la~g~~~~i~  168 (427)
                      .++.+|  .|++++|+|++++||+++.|+.|+||++.....  .......+|...|++++|+|  ++..+++++.++.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            344555  899999999999999999999999999987522  23344457999999999999  574444445569999


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC-
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT-  247 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~-  247 (427)
                      +|++.......                ....+....                          .+..|...+.+++|+|+ 
T Consensus        85 vwd~~~~~~~~----------------~~~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~  122 (351)
T 3f3f_A           85 LWEEDPDQEEC----------------SGRRWNKLC--------------------------TLNDSKGSLYSVKFAPAH  122 (351)
T ss_dssp             EEEECTTSCTT----------------SSCSEEEEE--------------------------EECCCSSCEEEEEECCGG
T ss_pred             EEecCCCcccc----------------cccCcceee--------------------------eecccCCceeEEEEcCCC
Confidence            99997110000                000001111                          23346778999999999 


Q ss_pred             -CCEEEEEecCCcEEEEEcCCCCcccc--------------ccCCCCeeEEEECCC---CCEEEEEEcCCceeeeeeeCC
Q 014302          248 -GDYFFAAKFDGTFYLWETNTWTSEPW--------------SSTSGFVTGATWDPE---GRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       248 -g~~l~~~~~dg~v~iwd~~~~~~~~~--------------~~~~~~v~~v~~spd---g~~l~~~~~~~~~i~~~~~~~  309 (427)
                       +++|++++.|+.|++||+++.+....              ..+...+.+++|+|+   +..+++++.++ .+..+....
T Consensus       123 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~  201 (351)
T 3f3f_A          123 LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ-AIIYQRGKD  201 (351)
T ss_dssp             GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE-EEEEEECTT
T ss_pred             CCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC-cEEEEccCC
Confidence             99999999999999999988775221              157788999999997   88888776555 443333322


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCC----CEEEEEEecCCCcceeEEEEEEeccCceE------------
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASG----ERLAVSYKGGDDIYKGLIAIYDARRTPLI------------  373 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g----~~La~~~~~~~d~~~g~i~vwd~~~~~~~------------  373 (427)
                      .....      .    .....+...|.+++|+|++    ++|++   ++.|   |.|++||++.+...            
T Consensus       202 ~~~~~------~----~~~~~h~~~i~~~~~~p~~~~~~~~l~s---~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~  265 (351)
T 3f3f_A          202 GKLHV------A----AKLPGHKSLIRSISWAPSIGRWYQLIAT---GCKD---GRIRIFKITEKLSPLASEESLTNSNM  265 (351)
T ss_dssp             SCEEE------E----EECCCCCSCEEEEEECCCSSCSSEEEEE---EETT---SCEEEEEEEECC--------------
T ss_pred             Cceee------e----eecCCCCcceeEEEECCCCCCcceEEEE---EcCC---CeEEEEeCCCCcCccccCCcccceec
Confidence            21000      0    1111244589999999998    78888   5556   66999999874211            


Q ss_pred             -----------------------------EEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccccC
Q 014302          374 -----------------------------SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  423 (427)
Q Consensus       374 -----------------------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~  423 (427)
                                                   ...+...+.+.  .....+++|.|+   +.+|++|..||.|.+|++-...
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~---~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          266 FDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH--NGEVWSVSWNLT---GTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             -------------------------CCSEEEEEEEEECTT--SSCEEEEEECSS---SCCEEEEETTSCEEEEEECTTS
T ss_pred             cCCCcccccccccccccccceeeeecccccccEEEEEecc--cccEEEEEEcCC---CCEEEEecCCCcEEEEecCcCc
Confidence                                         11122222222  233678999986   6789999999999999986543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.96  E-value=2.4e-27  Score=221.61  Aligned_cols=223  Identities=15%  Similarity=0.158  Sum_probs=160.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc--ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD--ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~--~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|++++|+|++.+| +++.|++|+|||+..+...  ......+|...|++++|+|++..+++++.++.|++||+.     
T Consensus        96 ~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-----  169 (357)
T 4g56_B           96 GVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-----  169 (357)
T ss_dssp             CEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-----
T ss_pred             CEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-----
Confidence            69999999998655 5678999999999876221  122345799999999999999544445566999999997     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-cccC--------------ceE-----EeccCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-PGLG--------------TPI-----RRGFGG  238 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~--------------~~~-----~~~~~~  238 (427)
                          +                ...+..+..| ...|++++|+|++.. +.++              ...     ..+...
T Consensus       170 ----~----------------~~~~~~~~~h-~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~  228 (357)
T 4g56_B          170 ----Q----------------KAVLKSYNAH-SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI  228 (357)
T ss_dssp             ----T----------------TEEEEEECCC-SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSC
T ss_pred             ----C----------------CcEEEEEcCC-CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccc
Confidence                1                2445556666 788999999998863 2211              111     124467


Q ss_pred             eEEEEEccCC-CEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCC-EEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          239 LSILKWSPTG-DYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGR-MILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       239 v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~-~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      +.+++|+|++ .+|++|+.|+.|++||+++++.. .+..|...|.+++|+|++. +|+++ +.++.+++|++.....   
T Consensus       229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg-s~D~~i~iwd~~~~~~---  304 (357)
T 4g56_B          229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI-SEDCTVAVLDADFSEV---  304 (357)
T ss_dssp             EEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE-ETTSCEEEECTTSCEE---
T ss_pred             ccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE-eCCCEEEEEECCCCcE---
Confidence            8999999985 57779999999999999988774 4448899999999999985 55554 5666888887655311   


Q ss_pred             ccccccccccceeeccCCceeEEEECC-CCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                                ...+.|.+.|++|+|+| ++++||+   ++.|   |+|++|++.+.
T Consensus       305 ----------~~~~~H~~~V~~vafsP~d~~~l~s---~s~D---g~v~iW~~~~~  344 (357)
T 4g56_B          305 ----------FRDLSHRDFVTGVAWSPLDHSKFTT---VGWD---HKVLHHHLPSE  344 (357)
T ss_dssp             ----------EEECCCSSCEEEEEECSSSTTEEEE---EETT---SCEEEEECC--
T ss_pred             ----------eEECCCCCCEEEEEEeCCCCCEEEE---EcCC---CeEEEEECCCC
Confidence                      12234566899999998 7999998   5566   66999999653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=6.8e-26  Score=216.62  Aligned_cols=267  Identities=13%  Similarity=0.259  Sum_probs=196.0

Q ss_pred             CCCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccC
Q 014302           96 LLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSY  174 (427)
Q Consensus        96 ~l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~  174 (427)
                      +..+.-++.|+||++ ++||+|. |++|+|||..++.........+|...|++|+|+|+| .+|++| .++.|+||++. 
T Consensus       102 ~~~d~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~-  177 (420)
T 4gga_A          102 IRNDYYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQ-  177 (420)
T ss_dssp             CCCCTTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETT-
T ss_pred             CcccccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcC-
Confidence            333446789999986 5888875 999999999987333333445688899999999999 555555 56999999997 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC------------------ceEEecc
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG------------------TPIRRGF  236 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~------------------~~~~~~~  236 (427)
                              ++                ..+..+..| ...+.+++|++  .++.++                  ..+..|.
T Consensus       178 --------~~----------------~~~~~~~~h-~~~v~~~s~~~--~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~  230 (420)
T 4gga_A          178 --------QQ----------------KRLRNMTSH-SARVGSLSWNS--YILSSGSRSGHIHHHDVRVAEHHVATLSGHS  230 (420)
T ss_dssp             --------TT----------------EEEEEECCC-SSCEEEEEEET--TEEEEEETTSEEEEEETTSSSCEEEEEECCS
T ss_pred             --------CC----------------cEEEEEeCC-CCceEEEeeCC--CEEEEEeCCCceeEeeecccceeeEEecccc
Confidence                    11                344555555 66777777743  333322                  1245688


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-----ccccCCCCeeEEEECCCCCEEE-EE-EcCCceeeeeeeCC
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMIL-LA-FAGSLTLGSIHFAS  309 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~v~~v~~spdg~~l~-~~-~~~~~~i~~~~~~~  309 (427)
                      ..+..+.|+|+++++++++.|+.|++||..+++..     ....|...|.+++|+|++..++ ++ ++.++.|++|++..
T Consensus       231 ~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t  310 (420)
T 4gga_A          231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS  310 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTT
T ss_pred             cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCc
Confidence            89999999999999999999999999999887642     2237889999999999776544 33 34567888888766


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCC
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPK  389 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  389 (427)
                      ...             ...+..+..+.++.|+|+++.|+++. +..|   +.|+|||+.++.++.     .+.+...  .
T Consensus       311 ~~~-------------~~~~~~~~~v~~~~~~~~~~~lv~~s-g~~d---~~I~iwd~~~~~~v~-----~l~gH~~--~  366 (420)
T 4gga_A          311 GAC-------------LSAVDAHSQVCSILWSPHYKELISGH-GFAQ---NQLVIWKYPTMAKVA-----ELKGHTS--R  366 (420)
T ss_dssp             TEE-------------EEEEECSSCEEEEEEETTTTEEEEEE-CTTT---CCEEEEETTTCCEEE-----EECCCSS--C
T ss_pred             ccc-------------ceeeccccceeeeeecCCCCeEEEEE-ecCC---CEEEEEECCCCcEEE-----EEcCCCC--C
Confidence            411             11233445789999999999998843 4455   669999999887653     2334332  3


Q ss_pred             ceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       390 ~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      ..+++|.|+   |..|+.|..||.|.+|+++
T Consensus       367 V~~l~~spd---g~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          367 VLSLTMSPD---GATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EEEEEECTT---SSCEEEEETTTEEEEECCS
T ss_pred             EEEEEEcCC---CCEEEEEecCCeEEEEECC
Confidence            679999986   7789999999999999975

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.7e-26  Score=219.49  Aligned_cols=264  Identities=14%  Similarity=0.208  Sum_probs=193.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .+.+++|++  ..+++++.|+.|+||++..+.. .......|...|.+++|+|++..+++++.++.|++|++.       
T Consensus        95 ~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~-~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-------  164 (401)
T 4aez_A           95 YLNLLDWSN--LNVVAVALERNVYVWNADSGSV-SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-------  164 (401)
T ss_dssp             TCBCEEECT--TSEEEEEETTEEEEEETTTCCE-EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-------
T ss_pred             eEEEEeecC--CCEEEEECCCeEEEeeCCCCcE-eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc-------
Confidence            566788876  4577788999999999987722 223334488899999999999444444456999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC------------------ceEEeccCCeEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG------------------TPIRRGFGGLSIL  242 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~------------------~~~~~~~~~v~~~  242 (427)
                        .+                ..+..+..| ...|.+++|+  ++.+..+                  ..+..|.+.|.++
T Consensus       165 --~~----------------~~~~~~~~~-~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  223 (401)
T 4aez_A          165 --SQ----------------TKLRTMAGH-QARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL  223 (401)
T ss_dssp             --TC----------------CEEEEECCC-SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             --CC----------------eEEEEecCC-CCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence              11                233444444 7788888884  3343221                  1245588899999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEc--CCceeeeeeeCCCCCCcccccc
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      +|+|++++|++++.|+.|++||+++.+.. .+..|...|.+++|+|++..++++++  .++.+++|++.....       
T Consensus       224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-------  296 (401)
T 4aez_A          224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-------  296 (401)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-------
T ss_pred             EEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-------
Confidence            99999999999999999999999987764 34478999999999998876665544  567888888776421       


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  399 (427)
                            ...+.+...|.+++|+|++++|+++. |..|   |.|++||+.++......   .+.+..  ....+++|+|+ 
T Consensus       297 ------~~~~~~~~~v~~~~~s~~~~~l~~~~-g~~d---g~i~v~~~~~~~~~~~~---~~~~h~--~~v~~~~~s~d-  360 (401)
T 4aez_A          297 ------VNTVDAGSQVTSLIWSPHSKEIMSTH-GFPD---NNLSIWSYSSSGLTKQV---DIPAHD--TRVLYSALSPD-  360 (401)
T ss_dssp             ------EEEEECSSCEEEEEECSSSSEEEEEE-CTTT---CEEEEEEEETTEEEEEE---EEECCS--SCCCEEEECTT-
T ss_pred             ------EEEEeCCCcEEEEEECCCCCeEEEEe-ecCC---CcEEEEecCCccceeEE---EecCCC--CCEEEEEECCC-
Confidence                  11223455899999999999998852 3345   77999999886654332   122322  23668999986 


Q ss_pred             CCCceeEEEeeCceEEEEecc
Q 014302          400 KQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       400 ~~g~~l~v~~~~g~i~~~~~~  420 (427)
                        |..|+++..||.|.+|++.
T Consensus       361 --g~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          361 --GRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             --SSEEEEECTTSEEEEEECC
T ss_pred             --CCEEEEEeCCCcEEEEECC
Confidence              7789999999999999975

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.96  E-value=6.4e-27  Score=217.99  Aligned_cols=275  Identities=9%  Similarity=0.075  Sum_probs=190.0

Q ss_pred             ceeeeEEcCCCC-EEEEEeC---CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC---CCceEEEecCCeEEEEecc
Q 014302          101 DLQGVSWHQHKH-IVAFISG---STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN---GGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~---~~~~la~g~~~~i~iw~~~  173 (427)
                      .|++++|+|++. ++++++.   |+.|+||++..... ......+|...|.+++|+|+   +..+++++.++.|++|++.
T Consensus        20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~   98 (357)
T 3i2n_A           20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDL-KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE   98 (357)
T ss_dssp             CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSE-EEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred             ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcc-cceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence            799999999997 4556665   99999999987622 22333468899999999999   5444555567999999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee------EeCCCCCCcccCc---------------e-
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL------SWGPDGRFPGLGT---------------P-  231 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------~~spdg~~l~~~~---------------~-  231 (427)
                      ...                        .....+..| ...|.++      +|+|++++++++.               . 
T Consensus        99 ~~~------------------------~~~~~~~~~-~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~  153 (357)
T 3i2n_A           99 APE------------------------MPVYSVKGH-KEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPV  153 (357)
T ss_dssp             SCS------------------------SCSEEECCC-SSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCS
T ss_pred             CCC------------------------ccEEEEEec-ccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcc
Confidence            111                        022334444 6778887      4577887754331               1 


Q ss_pred             --EEecc----CCeEEEE----EccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECC---CCCEEEEEEcC
Q 014302          232 --IRRGF----GGLSILK----WSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDP---EGRMILLAFAG  298 (427)
Q Consensus       232 --~~~~~----~~v~~~~----~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~sp---dg~~l~~~~~~  298 (427)
                        +..+.    ..+.+++    |+|++++|++++.|+.|++||+++.+......+...+.+++|+|   ++.+|++++ .
T Consensus       154 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~-~  232 (357)
T 3i2n_A          154 ANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS-L  232 (357)
T ss_dssp             EEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE-S
T ss_pred             eeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC-C
Confidence              11122    2788888    78999999999999999999999988766668899999999999   999998875 4


Q ss_pred             CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCceEE---
Q 014302          299 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLIS---  374 (427)
Q Consensus       299 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~~~---  374 (427)
                      ++.+++|++........       +.......+...|.+++|+|+++ +|++   ++.|   |.|++||++......   
T Consensus       233 dg~i~i~d~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~---~~~d---g~i~iwd~~~~~~~~~~~  299 (357)
T 3i2n_A          233 EGKFHVFDMRTQHPTKG-------FASVSEKAHKSTVWQVRHLPQNRELFLT---AGGA---GGLHLWKYEYPIQRSKKD  299 (357)
T ss_dssp             TTEEEEEEEEEEETTTE-------EEEEEEECCSSCEEEEEEETTEEEEEEE---EETT---SEEEEEEEECCSCC--CC
T ss_pred             CCeEEEEeCcCCCcccc-------eeeeccCCCcCCEEEEEECCCCCcEEEE---EeCC---CcEEEeecCCCccccccc
Confidence            55888888766421100       00001113455899999999999 6777   5556   779999998654321   


Q ss_pred             -----------EeeeeeeeCCCCCCCceeEEeccCCCCCceeE-EEeeCceEEEEecc
Q 014302          375 -----------LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS-VCWSSGFCCTYPLI  420 (427)
Q Consensus       375 -----------~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~-v~~~~g~i~~~~~~  420 (427)
                                 ......+.+.  .....+++|.|+   +..|+ .|..||.|.+|++-
T Consensus       300 ~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~---~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          300 SEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPD---KRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             TTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSS---STTEEEEEETTSEEEEEEEC
T ss_pred             CCCCccccccccceeeccccC--CCCeeEEEEcCC---CCeEEEEecCCCcEEEEECC
Confidence                       1122223332  223668999986   66677 58889999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=2.5e-27  Score=222.11  Aligned_cols=276  Identities=12%  Similarity=0.088  Sum_probs=186.1

Q ss_pred             CceeeeEEcCCCCEEEEEeCCC-------eEEEEEccCCCCcc--------eeeccCCcCCeeEEEEccCCCceEEEe--
Q 014302          100 VDLQGVSWHQHKHIVAFISGST-------QVIVRDYEDSGKDA--------CILTSDSQRDVKVLEWRPNGGRSLSVG--  162 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~-------~v~vwd~~~~~~~~--------~~~~~~~~~~v~~l~~sp~~~~~la~g--  162 (427)
                      .+|++++|+|||++||+|+.+.       .|+||+++......        ......|...|++++|+++   ++++|  
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~---~~~~g~~   91 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKG---IILVGCN   91 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETT---EEEEECC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCC---EEEEEEC
Confidence            3799999999999999997643       59999998763211        1123467778888877643   33333  


Q ss_pred             ----------cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcc-cCCCceeeeEeCCCCCCcc--cC
Q 014302          163 ----------CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS-QNGEQITALSWGPDGRFPG--LG  229 (427)
Q Consensus       163 ----------~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~spdg~~l~--~~  229 (427)
                                .++.+++|++........                  .....+.... .....+.+++|+|||++++  ++
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~  153 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVNDQLE------------------FLTSVDFDASTNADDYTKLVYISREGTVAAIASS  153 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTTTEEE------------------EEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES
T ss_pred             CCccEEEEecCCCcEEEEEecCCCceEE------------------EeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC
Confidence                      246688998862111000                  0011111111 1134577899999999864  22


Q ss_pred             c---eE-------------EeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc---ccccCCCCeeEEEECCCCC
Q 014302          230 T---PI-------------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWSSTSGFVTGATWDPEGR  290 (427)
Q Consensus       230 ~---~~-------------~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~v~~v~~spdg~  290 (427)
                      .   .+             ..|...|.+++|+|||++|++++ ++.+++|+..+++..   ....|...+.+++|+|+|+
T Consensus       154 ~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~  232 (365)
T 4h5i_A          154 KVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDT  232 (365)
T ss_dssp             CSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTE
T ss_pred             CCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCC
Confidence            1   11             13667899999999999999988 556777777766653   2336888899999999999


Q ss_pred             EEEEEEcCCc---eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          291 MILLAFAGSL---TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       291 ~l~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      ++++++.+++   .++.|++.......        ........+...|++++|||||++||+   ++.|   ++|+|||+
T Consensus       233 ~l~~~s~d~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~~~V~~~~~Spdg~~las---gs~D---~~V~iwd~  298 (365)
T 4h5i_A          233 VLIAASLKKGKGIVLTKISIKSGNTSV--------LRSKQVTNRFKGITSMDVDMKGELAVL---ASND---NSIALVKL  298 (365)
T ss_dssp             EEEEEEESSSCCEEEEEEEEETTEEEE--------EEEEEEESSCSCEEEEEECTTSCEEEE---EETT---SCEEEEET
T ss_pred             EEEEEecCCcceeEEeecccccceecc--------eeeeeecCCCCCeEeEEECCCCCceEE---EcCC---CEEEEEEC
Confidence            9998876653   45666665431100        000111223458999999999999999   6666   66999999


Q ss_pred             ccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          368 RRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      ++++++...    .++...  ...+++|.|+   |.+|+.|..|+.|.+|++.
T Consensus       299 ~~~~~~~~~----~~gH~~--~V~~v~fSpd---g~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          299 KDLSMSKIF----KQAHSF--AITEVTISPD---STYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             TTTEEEEEE----TTSSSS--CEEEEEECTT---SCEEEEEETTSEEEEEECC
T ss_pred             CCCcEEEEe----cCcccC--CEEEEEECCC---CCEEEEEeCCCeEEEEEcC
Confidence            998765321    122222  3679999996   8899999999999999984

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=1.7e-27  Score=227.37  Aligned_cols=265  Identities=13%  Similarity=0.091  Sum_probs=188.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .+++++|+|++++|++++.|+.|++||+...  ........| ..+....|+|++..+++++.++.|++|++.       
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-------  127 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIR--DGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSN-------  127 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSE--ETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTT-------
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEeccc--ceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCC-------
Confidence            4678999999999999999999999998876  222222334 445556789999444444456999999987       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~  243 (427)
                        .+                .....+..| ...|++++|+|++++++++.                 .+..|...|.+++
T Consensus       128 --~~----------------~~~~~~~~h-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  188 (420)
T 3vl1_A          128 --FN----------------LQREIDQAH-VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA  188 (420)
T ss_dssp             --SC----------------EEEEETTSS-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEE
T ss_pred             --Cc----------------ceeeecccc-cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEE
Confidence              11                344445555 88999999999998865332                 2456889999999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCccccc----c---------------------CCCCeeEEEECCCCCEEEEEEcC
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----S---------------------TSGFVTGATWDPEGRMILLAFAG  298 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----~---------------------~~~~v~~v~~spdg~~l~~~~~~  298 (427)
                      |+|++++|++++.|+.|++||+++++.....    .                     +...+.+++|+|+|++|++++. 
T Consensus       189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-  267 (420)
T 3vl1_A          189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV-  267 (420)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred             EcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence            9999999999999999999999987653222    1                     2355666777899999987755 


Q ss_pred             CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCceEEEee
Q 014302          299 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISLSL  377 (427)
Q Consensus       299 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~  377 (427)
                      ++.+.+|++.......           .....+...|.+++|+|+++ +|++   ++.|   |.|++||++++...    
T Consensus       268 dg~i~i~d~~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~~l~~---g~~d---g~i~vwd~~~~~~~----  326 (420)
T 3vl1_A          268 SGVITVHNVFSKEQTI-----------QLPSKFTCSCNSLTVDGNNANYIYA---GYEN---GMLAQWDLRSPECP----  326 (420)
T ss_dssp             TSCEEEEETTTCCEEE-----------EECCTTSSCEEEEEECSSCTTEEEE---EETT---SEEEEEETTCTTSC----
T ss_pred             CCeEEEEECCCCceeE-----------EcccccCCCceeEEEeCCCCCEEEE---EeCC---CeEEEEEcCCCcCc----
Confidence            4488888876642110           00112345899999999999 8888   5666   77999999886531    


Q ss_pred             eeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          378 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       378 ~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      ...+.+...  .++...+.+.   +.+|+++..||.|.+|++--
T Consensus       327 ~~~~~~~~~--~~v~~~~~~~---~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          327 VGEFLINEG--TPINNVYFAA---GALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             SEEEEESTT--SCEEEEEEET---TEEEEEETTTEEEEEEEECC
T ss_pred             hhhhhccCC--CCceEEEeCC---CCEEEEecCCccEEEEeccC
Confidence            111222111  1333334443   66899999999999999653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=1e-26  Score=214.63  Aligned_cols=264  Identities=15%  Similarity=0.138  Sum_probs=196.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.+++|+|||++++++..++.+.+|.....  ........|...|++++|+|++ .+|++++++.+++|++......  
T Consensus        11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~dg~i~iw~~~~~~~~--   85 (337)
T 1gxr_A           11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRH--ARQINTLNHGEVVCAVTISNPT-RHVYTGGKGCVKVWDISHPGNK--   85 (337)
T ss_dssp             ECCEEEECSSSCEEECCCCTTSSSSTTCCSE--EEEEEEECCSSCCCEEEECSSS-SEEEEECBSEEEEEETTSTTCC--
T ss_pred             ceeEEEECCCCCEEEeecCCCcEeccccCCc--cccceeccCCCceEEEEEecCC-cEEEEcCCCeEEEEECCCCCce--
Confidence            6899999999999998887777666543332  2333345799999999999999 6777777999999999721110  


Q ss_pred             cccCcccccccccCCCCcceeEeehhc-ccCCCceeeeEeCCCCCCcccCc-------------------eEEeccCCeE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRFPGLGT-------------------PIRRGFGGLS  240 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~-------------------~~~~~~~~v~  240 (427)
                                          .....+. ..+...|.+++|+|+++++..+.                   .+..|...+.
T Consensus        86 --------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~  145 (337)
T 1gxr_A           86 --------------------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY  145 (337)
T ss_dssp             --------------------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE
T ss_pred             --------------------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE
Confidence                                0111111 12377899999999998754321                   1234667899


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      +++|+|++++|++++.|+.|++||+++.+.. .+..|...+.+++|+|++++|++++. ++.+++|++.....       
T Consensus       146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~-------  217 (337)
T 1gxr_A          146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL-DNTVRSWDLREGRQ-------  217 (337)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEE-------
T ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec-CCcEEEEECCCCce-------
Confidence            9999999999999999999999999987764 34478899999999999999998754 45888888765421       


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  399 (427)
                            .....+...+.+++|+|++++|+++   +.+   +.|++||+.......+.      .  ......+++|.|+ 
T Consensus       218 ------~~~~~~~~~v~~~~~s~~~~~l~~~---~~~---~~i~~~~~~~~~~~~~~------~--~~~~v~~~~~~~~-  276 (337)
T 1gxr_A          218 ------LQQHDFTSQIFSLGYCPTGEWLAVG---MES---SNVEVLHVNKPDKYQLH------L--HESCVLSLKFAYC-  276 (337)
T ss_dssp             ------EEEEECSSCEEEEEECTTSSEEEEE---ETT---SCEEEEETTSSCEEEEC------C--CSSCEEEEEECTT-
T ss_pred             ------EeeecCCCceEEEEECCCCCEEEEE---cCC---CcEEEEECCCCCeEEEc------C--CccceeEEEECCC-
Confidence                  1112344589999999999999984   444   56999999987754221      2  2223668999885 


Q ss_pred             CCCceeEEEeeCceEEEEecc
Q 014302          400 KQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       400 ~~g~~l~v~~~~g~i~~~~~~  420 (427)
                        +..|+++..+|.|.+|++.
T Consensus       277 --~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          277 --GKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             --SSEEEEEETTSEEEEEETT
T ss_pred             --CCEEEEecCCCcEEEEECC
Confidence              7789999999999999964

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=2.8e-26  Score=218.88  Aligned_cols=273  Identities=15%  Similarity=0.151  Sum_probs=189.9

Q ss_pred             CCCcee-eeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302           98 PEVDLQ-GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus        98 ~~~~V~-~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      ..+.+. ...|+|++++||+++.|+.|+|||+...  ........|...|++++|+|++..+++++.++.|++|++.   
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~---  169 (420)
T 3vl1_A           95 KRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN--LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK---  169 (420)
T ss_dssp             CSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSC--EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT---
T ss_pred             ecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCc--ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC---
Confidence            344444 4478999999999999999999998866  4555556899999999999999544445566999999997   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------eE---Ee---cc
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------PI---RR---GF  236 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------~~---~~---~~  236 (427)
                            .+                .....+..| ...|.+++|+|++++++++.              .+   ..   +.
T Consensus       170 ------~~----------------~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~  226 (420)
T 3vl1_A          170 ------DG----------------SNPRTLIGH-RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH  226 (420)
T ss_dssp             ------TC----------------CCCEEEECC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTT
T ss_pred             ------CC----------------cCceEEcCC-CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCC
Confidence                  11                223344555 78899999999998755331              11   11   22


Q ss_pred             ---------------------CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCC-EE
Q 014302          237 ---------------------GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGR-MI  292 (427)
Q Consensus       237 ---------------------~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~-~l  292 (427)
                                           ..+.+++|+|++++|++++.||.|++||+++.+.....  .|...+.+++|+|+++ +|
T Consensus       227 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  306 (420)
T 3vl1_A          227 DGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYI  306 (420)
T ss_dssp             CCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEE
T ss_pred             CCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEE
Confidence                                 33444556889999999999999999999988763322  5788999999999999 77


Q ss_pred             EEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          293 LLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       293 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      ++++ .++.+++|++......+.          .....+...|..+.| +++++|++   ++.|   ++|++|++.....
T Consensus       307 ~~g~-~dg~i~vwd~~~~~~~~~----------~~~~~~~~~v~~~~~-~~~~~l~s---~~~d---~~v~iw~~~~~~~  368 (420)
T 3vl1_A          307 YAGY-ENGMLAQWDLRSPECPVG----------EFLINEGTPINNVYF-AAGALFVS---SGFD---TSIKLDIISDPES  368 (420)
T ss_dssp             EEEE-TTSEEEEEETTCTTSCSE----------EEEESTTSCEEEEEE-ETTEEEEE---ETTT---EEEEEEEECCTTC
T ss_pred             EEEe-CCCeEEEEEcCCCcCchh----------hhhccCCCCceEEEe-CCCCEEEE---ecCC---ccEEEEeccCCCC
Confidence            7664 555888888876421110          001113347788855 57888888   6777   8899999976321


Q ss_pred             ---EEEee-eeeeeCCCCCCCceeEEeccCCC-CCceeEEEeeCceEEEEec
Q 014302          373 ---ISLSL-IGFIRGPGDNPKPVAFSFHDKFK-QGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       373 ---~~~~~-~~~~~~~~~~~~~~~~~f~~~~~-~g~~l~v~~~~g~i~~~~~  419 (427)
                         +.... ...+.+  ......+++|.|+.. .|.++++| ++|.+.+|.+
T Consensus       369 ~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~g~l~a~g-~~g~~~~~~~  417 (420)
T 3vl1_A          369 ERPAIEFETPTFLVS--NDDAVSQFCYVSDDESNGEVLEVG-KNNFCALYNL  417 (420)
T ss_dssp             CSCEECTTSCEEECC--SSCCCCEEEEECCSSSSCEEEEEE-TTTEEEEEES
T ss_pred             CccceeccCccEEcc--CCcceEEEEEccCCCCcceEEEEc-CCceEEEEec
Confidence               11111 111222  223356889999743 23578877 8999999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.95  E-value=1e-26  Score=220.28  Aligned_cols=221  Identities=15%  Similarity=0.239  Sum_probs=167.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|+|++||+|+.|++|+|||+...  .......+|...|.+++|+|++..+++++.++.|++||+.       
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~-------  195 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-------  195 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-------
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-------
Confidence            5899999999999999999999999999876  5556667899999999999999656666677999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccCc--------------e---E-------Eec
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLGT--------------P---I-------RRG  235 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~--------------~---~-------~~~  235 (427)
                        ++                .+...+.  ....+.+++|+| +|++++.+.              .   +       ..|
T Consensus       196 --~~----------------~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h  255 (393)
T 1erj_A          196 --TG----------------QCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH  255 (393)
T ss_dssp             --TT----------------EEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred             --CC----------------eeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCC
Confidence              11                2222222  255688999999 888755331              1   1       246


Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-------------cccccCCCCeeEEEECCCCCEEEEEEcCCcee
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------------EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL  302 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------------~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i  302 (427)
                      ...|.+++|+|+|++|++++.|+.|++||+++...             ..+.+|...|.+++|+|++++|++++. ++.+
T Consensus       256 ~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~-D~~v  334 (393)
T 1erj_A          256 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGV  334 (393)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEE
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeC-CCeE
Confidence            77899999999999999999999999999976432             123478899999999999999998754 4488


Q ss_pred             eeeeeCCCCCCccccccccccccceeeccCCceeEEEECC------CCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          303 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA------SGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp------~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ++|++......            .....+.+.|.+++|++      ++++||+   ++.|   |+|+||+++.
T Consensus       335 ~iwd~~~~~~~------------~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s---gs~D---g~i~iW~~~~  389 (393)
T 1erj_A          335 LFWDKKSGNPL------------LMLQGHRNSVISVAVANGSSLGPEYNVFAT---GSGD---CKARIWKYKK  389 (393)
T ss_dssp             EEEETTTCCEE------------EEEECCSSCEEEEEECSSCTTCTTCEEEEE---EETT---SEEEEEEEEE
T ss_pred             EEEECCCCeEE------------EEECCCCCCEEEEEecCCcCcCCCCCEEEE---ECCC---CcEEECcccc
Confidence            88887654210            01112445889999876      6888988   6666   7799999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.95  E-value=1.1e-25  Score=206.29  Aligned_cols=263  Identities=12%  Similarity=0.224  Sum_probs=186.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      -.++|+||+++ +||+| .|++|+|||+.++.........+|...|++++|+|+++.+++++.|+.|++|++.       
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~-------   97 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-------   97 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT-------
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC-------
Confidence            45789999986 77776 5999999999887332333445788899999999999544444566999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC------------------ceEEeccCCeEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG------------------TPIRRGFGGLSIL  242 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~------------------~~~~~~~~~v~~~  242 (427)
                        ++                ..+..+..| ...+.++.+  ++..++.+                  ..+..|...+..+
T Consensus        98 --~~----------------~~~~~~~~h-~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (318)
T 4ggc_A           98 --QQ----------------KRLRNMTSH-SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL  156 (318)
T ss_dssp             --TT----------------EEEEEEECC-SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred             --Cc----------------eeEEEecCc-cceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEE
Confidence              11                333444444 444444433  23332211                  1245578889999


Q ss_pred             EEccCCCEEEEEecCCcEEEEEcCCCCccc-----cccCCCCeeEEEECCCCCEEEE--EEcCCceeeeeeeCCCCCCcc
Q 014302          243 KWSPTGDYFFAAKFDGTFYLWETNTWTSEP-----WSSTSGFVTGATWDPEGRMILL--AFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       243 ~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-----~~~~~~~v~~v~~spdg~~l~~--~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      .+++++++|++++.|+.|++||+++++...     ...+...|..++++|++..++.  +++.++.+++|+......   
T Consensus       157 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~---  233 (318)
T 4ggc_A          157 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---  233 (318)
T ss_dssp             EECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE---
T ss_pred             EEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc---
Confidence            999999999999999999999998876522     2267788999999998765543  234445677776554311   


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  395 (427)
                                .....+...+..+.|+|+++.++++. ++.|   +.|+|||++++.++.     .+.+...  ...+++|
T Consensus       234 ----------~~~~~~~~~v~~~~~~~~~~~~~~~s-g~~d---~~i~iwd~~~~~~~~-----~l~gH~~--~V~~l~~  292 (318)
T 4ggc_A          234 ----------LSAVDAHSQVCSILWSPHYKELISGH-GFAQ---NQLVIWKYPTMAKVA-----ELKGHTS--RVLSLTM  292 (318)
T ss_dssp             ----------EEEEECSSCEEEEEEETTTTEEEEEE-CTTT---CCEEEEETTTCCEEE-----EECCCSS--CEEEEEE
T ss_pred             ----------cccccceeeeeeeeecccccceEEEE-EcCC---CEEEEEECCCCcEEE-----EEcCCCC--CEEEEEE
Confidence                      11223344789999999999998742 4455   679999999887763     2334333  3678999


Q ss_pred             ccCCCCCceeEEEeeCceEEEEecc
Q 014302          396 HDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       396 ~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      +|+   |..|+.|..||.|.+|+++
T Consensus       293 spd---g~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          293 SPD---GATVASAAADETLRLWRCF  314 (318)
T ss_dssp             CTT---SSCEEEEETTTEEEEECCS
T ss_pred             cCC---CCEEEEEecCCeEEEEECC
Confidence            986   7789999999999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.95  E-value=1e-26  Score=217.33  Aligned_cols=280  Identities=15%  Similarity=0.174  Sum_probs=195.1

Q ss_pred             ceeeeEEcCC----CCEEEEEeCCCeEEEEEccCCCCcceee---ccCCcCCeeEEEEccCCC---ceEEEe-cCCeEEE
Q 014302          101 DLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACIL---TSDSQRDVKVLEWRPNGG---RSLSVG-CKGGICI  169 (427)
Q Consensus       101 ~V~~l~~sp~----g~~lat~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~v~~l~~sp~~~---~~la~g-~~~~i~i  169 (427)
                      .|++++|+|+    ...+++++.++.|+||++..........   ...|...|++++|+|++.   .+|++| .++.|++
T Consensus        20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v   99 (366)
T 3k26_A           20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRI   99 (366)
T ss_dssp             CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEE
T ss_pred             ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEE
Confidence            8999999994    3456666667799999998662211111   112668899999999942   355555 5699999


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccCc--------------e---
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLGT--------------P---  231 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~--------------~---  231 (427)
                      |++.         ++                ..+..+..| ...|.+++|+| ++++++++.              .   
T Consensus       100 ~d~~---------~~----------------~~~~~~~~~-~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  153 (366)
T 3k26_A          100 INPI---------TM----------------QCIKHYVGH-GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI  153 (366)
T ss_dssp             ECTT---------TC----------------CEEEEEESC-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEch---------hc----------------eEeeeecCC-CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEE
Confidence            9987         11                334445555 88999999999 888755331              1   


Q ss_pred             E---EeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-----------------------------cCCCC
Q 014302          232 I---RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----------------------------STSGF  279 (427)
Q Consensus       232 ~---~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-----------------------------~~~~~  279 (427)
                      +   ..|...|.+++|+|++++|++++.||.|++||+++.+.....                             .|...
T Consensus       154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (366)
T 3k26_A          154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY  233 (366)
T ss_dssp             ECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred             ecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence            2   247789999999999999999999999999999876542111                             28899


Q ss_pred             eeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccc-ccccce-eeccCCceeEEEECCC--CCEEEEEEecCC
Q 014302          280 VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV-DLPDIV-SLTGSQGIEKIAWDAS--GERLAVSYKGGD  355 (427)
Q Consensus       280 v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~i~~v~~sp~--g~~La~~~~~~~  355 (427)
                      |.+++|+  +++++++ +.++.+.+|++......+....... ...... ...+...|.+++|+|+  +++|++   ++.
T Consensus       234 v~~~~~~--~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~---~~~  307 (366)
T 3k26_A          234 VDCVRWL--GDLILSK-SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL---GNQ  307 (366)
T ss_dssp             CCEEEEE--TTEEEEE-CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE---ECT
T ss_pred             EEEEEEc--CCEEEEE-ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE---Eec
Confidence            9999998  6788766 4556899999877533221110000 000011 2234557999999999  999999   666


Q ss_pred             CcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          356 DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       356 d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      |   |.|++||+.++...... ...+.+........+++|.|+   +..|++|..||.|.+|++
T Consensus       308 d---g~i~vwd~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~---~~~l~s~~~dg~i~iwd~  364 (366)
T 3k26_A          308 V---GKLYVWDLEVEDPHKAK-CTTLTHHKCGAAIRQTSFSRD---SSILIAVCDDASIWRWDR  364 (366)
T ss_dssp             T---SCEEEEECCSSSGGGCE-EEEECCTTCCSCEEEEEECTT---SSEEEEEETTSEEEEEEC
T ss_pred             C---CcEEEEECCCCCCcccc-ceEEcccccCCceEEEEeCCC---CCeEEEEeCCCEEEEEEe
Confidence            6   66999999887543111 112223322344778999985   778999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.8e-27  Score=226.36  Aligned_cols=293  Identities=11%  Similarity=0.085  Sum_probs=191.9

Q ss_pred             ceeeeEEcC-CCCEEEEEeCCCeEEEEEccC---CCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC--
Q 014302          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYED---SGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY--  174 (427)
Q Consensus       101 ~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~---~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~--  174 (427)
                      .|++++|+| ++++||+|+.|++|+|||+..   ...........|...|++++|+|++..+++++.++.|++|++..  
T Consensus        65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~  144 (437)
T 3gre_A           65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQ  144 (437)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEE
T ss_pred             ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecccc
Confidence            899999999 999999999999999999976   32111223335899999999999995555555679999999951  


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhccc---CCCceeeeE--eCCCCCCcccCc-----------------eE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALS--WGPDGRFPGLGT-----------------PI  232 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~--~spdg~~l~~~~-----------------~~  232 (427)
                      .+.......+                ..+..+...   ....+.++.  +++++.+++.+.                 .+
T Consensus       145 ~~~~~~~~~~----------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  208 (437)
T 3gre_A          145 QESEVKFLNC----------------ECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQII  208 (437)
T ss_dssp             ETTEEEEEEE----------------EEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCceeecccc----------------ceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEE
Confidence            1110000000                111111111   244555555  567776644321                 13


Q ss_pred             Ee--ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc-cCCCCeeEEEECC----CCCEEEEEEcCCceeee
Q 014302          233 RR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDP----EGRMILLAFAGSLTLGS  304 (427)
Q Consensus       233 ~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~v~~sp----dg~~l~~~~~~~~~i~~  304 (427)
                      ..  |...|.+++|+|++++|++++.||.|++||+++++... +. .|...|.+++|+|    ++++|+++ +.++.+++
T Consensus       209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~-~~dg~i~i  287 (437)
T 3gre_A          209 ENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG-SSKTFLTI  287 (437)
T ss_dssp             ECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE-STTEEEEE
T ss_pred             ccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE-cCCCcEEE
Confidence            34  67899999999999999999999999999999877643 22 6777899996654    67777765 56668999


Q ss_pred             eeeCCCCC--Cccccccccc---c-------cccee--eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          305 IHFASKPP--SLDAHLLPVD---L-------PDIVS--LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       305 ~~~~~~~~--~~~~~~~~~~---~-------~~~~~--~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      |++.....  .+.+|...+.   +       .....  ..+...|.+++|+ ++++|++   ++.|   +.|++||+.++
T Consensus       288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s---~~~d---~~i~~wd~~~~  360 (437)
T 3gre_A          288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT---DEAT---SSIVMFSLNEL  360 (437)
T ss_dssp             EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE---EGGG---TEEEEEETTCG
T ss_pred             EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe---cCCC---CeEEEEECCCc
Confidence            98875421  2222221110   0       00001  1144579999999 7888888   6666   67999999887


Q ss_pred             ceEEEeeee-----------------e-eeC------------CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          371 PLISLSLIG-----------------F-IRG------------PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       371 ~~~~~~~~~-----------------~-~~~------------~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .........                 + ...            ........+++|.+. ..+.+|+.|..||.|.+|.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~-~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          361 SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV-DETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEES-SSSEEEEEEETTSCEEEEC
T ss_pred             ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc-CCceEEEEEcCCceEEEeC
Confidence            654322100                 0 000            012234567888876 3366899999999999984

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.3e-26  Score=219.24  Aligned_cols=262  Identities=17%  Similarity=0.272  Sum_probs=187.7

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEc----cCCCC-----cceeecc---------CCcCCeeEEEEccCCCceEEE
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDY----EDSGK-----DACILTS---------DSQRDVKVLEWRPNGGRSLSV  161 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~----~~~~~-----~~~~~~~---------~~~~~v~~l~~sp~~~~~la~  161 (427)
                      .|++++|+|+++ +||+++.|+.|+||++    ..+..     ....+..         +|...|++++|+|++..++++
T Consensus        47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  126 (425)
T 1r5m_A           47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG  126 (425)
T ss_dssp             CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence            799999999999 9999999999999999    66521     1111111         157799999999999544444


Q ss_pred             ecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------
Q 014302          162 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------  230 (427)
Q Consensus       162 g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------  230 (427)
                      +.++.|++|+..          +                .....+..| ...|.+++|+|+++++..+.           
T Consensus       127 ~~dg~i~i~~~~----------~----------------~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          127 VENGELRLWNKT----------G----------------ALLNVLNFH-RAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             ETTSCEEEEETT----------S----------------CEEEEECCC-CSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             eCCCeEEEEeCC----------C----------------CeeeeccCC-CccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence            556899999954          1                223334444 78899999999998755331           


Q ss_pred             ---e---EEeccCC---------------eEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCC
Q 014302          231 ---P---IRRGFGG---------------LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPE  288 (427)
Q Consensus       231 ---~---~~~~~~~---------------v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spd  288 (427)
                         .   +..+...               +.+++|+|++ .+++++.++.|++||+++.+.. .+..|...|.+++|+|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~  258 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT  258 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC
Confidence               1   1112233               8889999985 5788889999999999987764 34478899999999999


Q ss_pred             CCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          289 GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       289 g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      +++|++++. ++.+++|++......            .....+...|.+++|+|++ +|++   ++.|   +.|++||++
T Consensus       259 ~~~l~~~~~-d~~i~i~d~~~~~~~------------~~~~~~~~~i~~~~~~~~~-~l~~---~~~d---~~i~i~d~~  318 (425)
T 1r5m_A          259 NKLLLSASD-DGTLRIWHGGNGNSQ------------NCFYGHSQSIVSASWVGDD-KVIS---CSMD---GSVRLWSLK  318 (425)
T ss_dssp             TTEEEEEET-TSCEEEECSSSBSCS------------EEECCCSSCEEEEEEETTT-EEEE---EETT---SEEEEEETT
T ss_pred             CCEEEEEcC-CCEEEEEECCCCccc------------eEecCCCccEEEEEECCCC-EEEE---EeCC---CcEEEEECC
Confidence            999988754 447888877654211            0111234589999999999 7777   4555   679999998


Q ss_pred             cCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          369 RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      ++..+..     +....  ....+++|.|+   +.+|+++..+|.|.+|++.
T Consensus       319 ~~~~~~~-----~~~~~--~~i~~~~~s~~---~~~l~~~~~dg~i~i~~~~  360 (425)
T 1r5m_A          319 QNTLLAL-----SIVDG--VPIFAGRISQD---GQKYAVAFMDGQVNVYDLK  360 (425)
T ss_dssp             TTEEEEE-----EECTT--CCEEEEEECTT---SSEEEEEETTSCEEEEECH
T ss_pred             CCcEeEe-----cccCC--ccEEEEEEcCC---CCEEEEEECCCeEEEEECC
Confidence            8776532     22222  23668999986   7789999999999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.95  E-value=1.2e-26  Score=216.58  Aligned_cols=221  Identities=12%  Similarity=0.169  Sum_probs=169.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC----CcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      .|.+++|+|+|.+||+|+.|+.+++|++....    .........|...|.+++|+|++..+++++.+++|++||+.   
T Consensus       108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~---  184 (354)
T 2pbi_B          108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE---  184 (354)
T ss_dssp             CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT---
T ss_pred             CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC---
Confidence            68999999999999999999999999986541    12233345689999999999999666666778999999997   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC--CCCCcccCc-----------------eEEeccC
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--DGRFPGLGT-----------------PIRRGFG  237 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~l~~~~-----------------~~~~~~~  237 (427)
                            ++                .++..+..| ...|.+++|+|  +|++++++.                 .+..|..
T Consensus       185 ------~~----------------~~~~~~~~h-~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~  241 (354)
T 2pbi_B          185 ------SG----------------QLLQSFHGH-GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES  241 (354)
T ss_dssp             ------TC----------------CEEEEEECC-SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             ------CC----------------eEEEEEcCC-CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence                  11                344556666 67888998887  456654331                 1345778


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  314 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~  314 (427)
                      .|.+++|+|++++|++++.|++|++||++..+.....   .+...+.+++|+|+|++|++++. ++.+++|++...... 
T Consensus       242 ~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~-  319 (354)
T 2pbi_B          242 DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN-DYTINVWDVLKGSRV-  319 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCSEE-
T ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC-CCcEEEEECCCCceE-
Confidence            9999999999999999999999999999887653322   33457889999999999998754 458888887654210 


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                                 .....+.+.|.+++|+|+|++||+   ++.|   ++|+||+
T Consensus       320 -----------~~l~~h~~~v~~l~~spdg~~l~s---gs~D---~~v~vW~  354 (354)
T 2pbi_B          320 -----------SILFGHENRVSTLRVSPDGTAFCS---GSWD---HTLRVWA  354 (354)
T ss_dssp             -----------EEECCCSSCEEEEEECTTSSCEEE---EETT---SEEEEEC
T ss_pred             -----------EEEECCCCcEEEEEECCCCCEEEE---EcCC---CCEEecC
Confidence                       011234458999999999999999   6666   7799995

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.3e-26  Score=209.12  Aligned_cols=259  Identities=14%  Similarity=0.082  Sum_probs=187.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++| |++++|++++.|+.|+|||+...  ........|...|.+++|+|++..+++++.++.+++|++.....   
T Consensus        20 ~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---   93 (313)
T 3odt_A           20 DVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG---   93 (313)
T ss_dssp             CEEEEEE-EETTEEEEEETTSEEEEEEESSS--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT---
T ss_pred             CcEEEEe-cCCCEEEEEEcCCcEEEEECCCC--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC---
Confidence            7999999 99999999999999999999766  45555667899999999999995555555679999999872110   


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc---------------eEEeccCCeEEEEEc
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT---------------PIRRGFGGLSILKWS  245 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~---------------~~~~~~~~v~~~~~s  245 (427)
                                         ......+..+ ...|.+++|  +++++..+.               .+..|...+.+++|+
T Consensus        94 -------------------~~~~~~~~~~-~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~  151 (313)
T 3odt_A           94 -------------------EDPLYTLIGH-QGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVV  151 (313)
T ss_dssp             -------------------SCC-CEECCC-SSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEE
T ss_pred             -------------------CCcccchhhc-ccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEc
Confidence                               0122223344 677888888  444433221               234578899999998


Q ss_pred             c-CCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccc
Q 014302          246 P-TGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL  323 (427)
Q Consensus       246 p-~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  323 (427)
                      | ++++|++++.|+.|++||..... ..+. .+...+.+++|+|+++ ++++ ..++.+++|++......          
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~i~~~~~~~~~~-~~~~-~~dg~i~i~d~~~~~~~----------  218 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQNDKVI-KTFSGIHNDVVRHLAVVDDGH-FISC-SNDGLIKLVDMHTGDVL----------  218 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTEEE-EEECSSCSSCEEEEEEEETTE-EEEE-ETTSEEEEEETTTCCEE----------
T ss_pred             cCCCCEEEEEECCCCEEEEecCceE-EEEeccCcccEEEEEEcCCCe-EEEc-cCCCeEEEEECCchhhh----------
Confidence            8 99999999999999999933222 2222 4889999999999998 6655 45558888887654210          


Q ss_pred             ccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc
Q 014302          324 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP  403 (427)
Q Consensus       324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~  403 (427)
                        .....+.+.|.+++|+|++. |++   ++.|   |.|++||++++.....     +.....  ...+++|.|+   +.
T Consensus       219 --~~~~~~~~~i~~~~~~~~~~-l~~---~~~d---g~v~iwd~~~~~~~~~-----~~~~~~--~i~~~~~~~~---~~  279 (313)
T 3odt_A          219 --RTYEGHESFVYCIKLLPNGD-IVS---CGED---RTVRIWSKENGSLKQV-----ITLPAI--SIWSVDCMSN---GD  279 (313)
T ss_dssp             --EEEECCSSCEEEEEECTTSC-EEE---EETT---SEEEEECTTTCCEEEE-----EECSSS--CEEEEEECTT---SC
T ss_pred             --hhhhcCCceEEEEEEecCCC-EEE---EecC---CEEEEEECCCCceeEE-----EeccCc--eEEEEEEccC---CC
Confidence              01112445899999999994 666   4455   7799999998876532     222222  3668999986   45


Q ss_pred             eeEEEeeCceEEEEecc
Q 014302          404 LLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       404 ~l~v~~~~g~i~~~~~~  420 (427)
                       +.++..||.|.+|++-
T Consensus       280 -~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          280 -IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             -EEEEETTSCEEEEESC
T ss_pred             -EEEEeCCCcEEEEeCC
Confidence             4457899999999975

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.95  E-value=3.7e-26  Score=236.51  Aligned_cols=262  Identities=12%  Similarity=0.104  Sum_probs=195.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|||++++||+++.||.|+|||+..+  ........|...|++++|+|++..+++++.++.|++|++.       
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~-------   85 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-------   85 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-------
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC-------
Confidence            7999999999999999999999999999876  4555556799999999999999545555566999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc------------------eEEeccCCeEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT------------------PIRRGFGGLSIL  242 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------------~~~~~~~~v~~~  242 (427)
                        ++                .....+..| ...|.+++|+|+|++++++.                  .+..|...+.++
T Consensus        86 --~~----------------~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~  146 (814)
T 3mkq_A           86 --TG----------------EKVVDFEAH-PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV  146 (814)
T ss_dssp             --TC----------------CEEEEEECC-SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred             --CC----------------cEEEEEecC-CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence              11                234445555 78899999999998755331                  234477889999


Q ss_pred             EEcc-CCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECC--CCCEEEEEEcCCceeeeeeeCCCCCCcccc
Q 014302          243 KWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAH  317 (427)
Q Consensus       243 ~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~sp--dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~  317 (427)
                      +|+| +++.|++++.||.|++||+.+.......  .+...+..++|+|  ++.+|++++ .++.+.+|++......    
T Consensus       147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~i~~~d~~~~~~~----  221 (814)
T 3mkq_A          147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCV----  221 (814)
T ss_dssp             EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC-TTSEEEEEETTTTEEE----
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcEE----
Confidence            9999 8899999999999999999877664332  4458899999999  999998765 4558888877654110    


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                              .....+.+.|.+++|+|++++|++   ++.|   |.|++||+.++......     ...  .....+++|+|
T Consensus       222 --------~~~~~~~~~v~~~~~~~~~~~l~~---~~~d---g~v~vwd~~~~~~~~~~-----~~~--~~~v~~~~~~~  280 (814)
T 3mkq_A          222 --------ATLEGHMSNVSFAVFHPTLPIIIS---GSED---GTLKIWNSSTYKVEKTL-----NVG--LERSWCIATHP  280 (814)
T ss_dssp             --------EEEECCSSCEEEEEECSSSSEEEE---EETT---SCEEEEETTTCSEEEEE-----CCS--SSSEEEEEECT
T ss_pred             --------EEEcCCCCCEEEEEEcCCCCEEEE---EeCC---CeEEEEECCCCcEEEEe-----ecC--CCcEEEEEEcc
Confidence                    011123458999999999999998   4555   66999999987765322     222  22467899998


Q ss_pred             CCCCCc-eeEEEeeCceEEEEec
Q 014302          398 KFKQGP-LLSVCWSSGFCCTYPL  419 (427)
Q Consensus       398 ~~~~g~-~l~v~~~~g~i~~~~~  419 (427)
                      +.  .. +++++ .++.+.+|.+
T Consensus       281 ~~--~~~~~~~~-~~~~~~~~~~  300 (814)
T 3mkq_A          281 TG--RKNYIASG-FDNGFTVLSL  300 (814)
T ss_dssp             TC--GGGEEEEE-ETTEEEEEEC
T ss_pred             CC--CceEEEEE-eCCCEEEEEc
Confidence            62  23 36666 5666766664

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.7e-26  Score=213.55  Aligned_cols=230  Identities=17%  Similarity=0.286  Sum_probs=159.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC-----CcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~-----~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~  175 (427)
                      .|++++|+|++++||+|+.|++|+||++....     ........+|...|.+++|+|++..+++++.|+.|++|++...
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~  139 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES  139 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC
Confidence            79999999999999999999999999986431     1234455689999999999999954444455699999999511


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-------------------eEEecc
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-------------------PIRRGF  236 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-------------------~~~~~~  236 (427)
                                           +....++..+..| ...|.+++|+|++++++++.                   .+..|.
T Consensus       140 ---------------------~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~  197 (330)
T 2hes_X          140 ---------------------GEEYECISVLQEH-SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHE  197 (330)
T ss_dssp             ---------------------CCCCEEEEEECCC-SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCS
T ss_pred             ---------------------CCCeEEEEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCC
Confidence                                 1122344556666 78899999999998865432                   123477


Q ss_pred             CCeEEEEEccC--CCEEEEEecCCcEEEEEcCCCCc--------c-ccc-cCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          237 GGLSILKWSPT--GDYFFAAKFDGTFYLWETNTWTS--------E-PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       237 ~~v~~~~~sp~--g~~l~~~~~dg~v~iwd~~~~~~--------~-~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                      ..|.+++|+|+  +.+|++++.|++|++||++....        . .+. .|...|.+++|++++ .|++++ .++.+++
T Consensus       198 ~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~-~dg~v~i  275 (330)
T 2hes_X          198 GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVG-ADGVLAV  275 (330)
T ss_dssp             SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEE-TTSCEEE
T ss_pred             CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEe-CCCEEEE
Confidence            89999999999  67899999999999999976421        1 122 388899999999765 666654 5558888


Q ss_pred             eeeCCCCCCccccccccccccceeeccCC-ceeEEEECC--CCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQ-GIEKIAWDA--SGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~~sp--~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      |+........    .     ......+.. .|.+++|+|  ++++||+   ++.|   |+|+||+++.
T Consensus       276 w~~~~~~~~~----~-----~~~~~~h~~~~v~~v~~~~~~~~~~las---~s~D---g~v~~W~~~~  328 (330)
T 2hes_X          276 YEEVDGEWKV----F-----AKRALCHGVYEINVVKWLELNGKTILAT---GGDD---GIVNFWSLEK  328 (330)
T ss_dssp             EEEETTEEEE----E-----EEESCTTTTSCEEEEEEC-----CCEEE---EETT---SEEEEEEC--
T ss_pred             EEcCCCceEE----E-----eccccccccceEEEEEEecCCCceEEEE---ecCC---CcEEEEEecc
Confidence            8875431000    0     000112333 789999999  7889988   6666   7799999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=7.1e-26  Score=206.84  Aligned_cols=231  Identities=14%  Similarity=0.191  Sum_probs=173.7

Q ss_pred             ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCce
Q 014302          135 ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI  214 (427)
Q Consensus       135 ~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  214 (427)
                      ......+|...|++++|+|+++.+++++.++.|++|++.         ++                ..+..+..+ ..+|
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~---------~~----------------~~~~~~~~~-~~~v   58 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE---------TQ----------------VEVRSIQVT-ETPV   58 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT---------TT----------------EEEEEEECC-SSCE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC---------CC----------------ceeEEeecc-CCcE
Confidence            344556799999999999999555555567999999997         11                334445555 7789


Q ss_pred             eeeEeCCCCCCcccCc-----------------eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc--ccccc
Q 014302          215 TALSWGPDGRFPGLGT-----------------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--EPWSS  275 (427)
Q Consensus       215 ~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--~~~~~  275 (427)
                      .+++|+|++++++++.                 .+..|...|.+++|+|++++|++++.|++|++||+++...  ..+..
T Consensus        59 ~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~  138 (304)
T 2ynn_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG  138 (304)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred             EEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc
Confidence            9999999998865432                 2456888999999999999999999999999999987744  33458


Q ss_pred             CCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECC--CCCEEEEEEe
Q 014302          276 TSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA--SGERLAVSYK  352 (427)
Q Consensus       276 ~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp--~g~~La~~~~  352 (427)
                      |...|.+++|+| ++..|++++ .++.+++|++.........           ...+...+..++|+|  ++++|++   
T Consensus       139 h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~~~~~l~s---  203 (304)
T 2ynn_A          139 HEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPNFTL-----------TTGQERGVNYVDYYPLPDKPYMIT---  203 (304)
T ss_dssp             CCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCSEEE-----------ECCCTTCEEEEEECCSTTCCEEEE---
T ss_pred             cCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCcccee-----------ccCCcCcEEEEEEEEcCCCCEEEE---
Confidence            999999999999 567888765 5558888887654221110           011223688899986  7889988   


Q ss_pred             cCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          353 GGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       353 ~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++.|   ++|++||++++.++.     .+.+...  ...+++|+|+   +.+|+.|..||.|.+|++
T Consensus       204 ~s~D---~~i~iWd~~~~~~~~-----~~~~h~~--~v~~~~~~p~---~~~l~s~s~Dg~i~iWd~  257 (304)
T 2ynn_A          204 ASDD---LTIKIWDYQTKSCVA-----TLEGHMS--NVSFAVFHPT---LPIIISGSEDGTLKIWNS  257 (304)
T ss_dssp             EETT---SEEEEEETTTTEEEE-----EEECCSS--CEEEEEECSS---SSEEEEEETTSCEEEEET
T ss_pred             EcCC---CeEEEEeCCCCccce-----eeCCCCC--CEEEEEECCC---CCEEEEEcCCCeEEEEEC
Confidence            5666   779999999887652     2333332  3568899996   678999999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.95  E-value=1.3e-25  Score=213.24  Aligned_cols=251  Identities=18%  Similarity=0.245  Sum_probs=178.6

Q ss_pred             CCCCC--ceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCC-----cceeeccCCcCCeeEEEEccCCCceEEEe-cCCe
Q 014302           96 LLPEV--DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGK-----DACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGG  166 (427)
Q Consensus        96 ~l~~~--~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~-----~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~  166 (427)
                      .+.+|  .|++++|+| ++++||+|+.|++|+||++.....     .......+|...|.+++|+|++..+|+++ .++.
T Consensus        76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~  155 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV  155 (402)
T ss_dssp             CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred             eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence            34445  899999999 899999999999999999987632     23445567999999999999985566655 5699


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP  246 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp  246 (427)
                      |++||+.         .+                .....+.                        ...|...|.+++|+|
T Consensus       156 i~iwd~~---------~~----------------~~~~~~~------------------------~~~~~~~v~~~~~~~  186 (402)
T 2aq5_A          156 ILVWDVG---------TG----------------AAVLTLG------------------------PDVHPDTIYSVDWSR  186 (402)
T ss_dssp             EEEEETT---------TT----------------EEEEEEC------------------------TTTCCSCEEEEEECT
T ss_pred             EEEEECC---------CC----------------CccEEEe------------------------cCCCCCceEEEEECC
Confidence            9999997         11                1121110                        022567899999999


Q ss_pred             CCCEEEEEecCCcEEEEEcCCCCccc-c-ccCCCC-eeEEEECCCCCEEEEEE--cCCceeeeeeeCCCCCCcccccccc
Q 014302          247 TGDYFFAAKFDGTFYLWETNTWTSEP-W-SSTSGF-VTGATWDPEGRMILLAF--AGSLTLGSIHFASKPPSLDAHLLPV  321 (427)
Q Consensus       247 ~g~~l~~~~~dg~v~iwd~~~~~~~~-~-~~~~~~-v~~v~~spdg~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~  321 (427)
                      ++++|++++.|+.|++||+++++... + ..|... +..++|+|++++|+++.  ..++.+.+|++......+.      
T Consensus       187 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~------  260 (402)
T 2aq5_A          187 DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS------  260 (402)
T ss_dssp             TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSE------
T ss_pred             CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCce------
Confidence            99999999999999999999887643 3 356555 89999999999888764  4566888888766421110      


Q ss_pred             ccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCC
Q 014302          322 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQ  401 (427)
Q Consensus       322 ~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  401 (427)
                          .....+...|.+++|+|++++|+++  ++.|   +.|++||+.++........++    .......+++|.|+   
T Consensus       261 ----~~~~~~~~~v~~~~~s~~~~~l~~~--g~~d---g~i~i~d~~~~~~~~~~l~~~----~~~~~v~~~~~sp~---  324 (402)
T 2aq5_A          261 ----LQELDTSSGVLLPFFDPDTNIVYLC--GKGD---SSIRYFEITSEAPFLHYLSMF----SSKESQRGMGYMPK---  324 (402)
T ss_dssp             ----EEECCCCSSCEEEEEETTTTEEEEE--ETTC---SCEEEEEECSSTTCEEEEEEE----CCSSCCSEEEECCG---
T ss_pred             ----EEeccCCCceeEEEEcCCCCEEEEE--EcCC---CeEEEEEecCCCcceEeeccc----ccCCcccceEEecc---
Confidence                1112344578999999999999875  5556   669999999877311111111    11223568999986   


Q ss_pred             CceeEEEeeCceEEEEec
Q 014302          402 GPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       402 g~~l~v~~~~g~i~~~~~  419 (427)
                      +.+++  ..++.+.+|.+
T Consensus       325 ~~~~~--s~~~~~~~~~l  340 (402)
T 2aq5_A          325 RGLEV--NKCEIARFYKL  340 (402)
T ss_dssp             GGSCG--GGTEEEEEEEE
T ss_pred             cccce--ecceeEEEEEc
Confidence            44443  25667777765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7e-26  Score=221.14  Aligned_cols=274  Identities=11%  Similarity=0.078  Sum_probs=185.6

Q ss_pred             ceeeeEEcCC------CCEEEEEeCCCeEEEEEccCCCCc---------ceeeccCCcCCeeEEEEccCCCceEEEecCC
Q 014302          101 DLQGVSWHQH------KHIVAFISGSTQVIVRDYEDSGKD---------ACILTSDSQRDVKVLEWRPNGGRSLSVGCKG  165 (427)
Q Consensus       101 ~V~~l~~sp~------g~~lat~~~d~~v~vwd~~~~~~~---------~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~  165 (427)
                      .|.+++|+|+      +.+||+++.|++|+|||+......         +.....+|...|++++|+|++ .+++++.|+
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg  287 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG  287 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence            6999999997      579999999999999999765211         122445788999999999875 554555669


Q ss_pred             eEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeee--EeCCCC-CCcccCc------------
Q 014302          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDG-RFPGLGT------------  230 (427)
Q Consensus       166 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~spdg-~~l~~~~------------  230 (427)
                      +|++||+..         +              . .+...+..| ...|.++  +|+|+| .+++++.            
T Consensus       288 tV~lWD~~~---------~--------------~-~~~~~~~~H-~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          288 FVAEFDLTD---------P--------------E-VPSFYDQVH-DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             EEEEEETTB---------C--------------S-SCSEEEECS-SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             EEEEEECCC---------C--------------C-CceEEeecc-cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence            999999971         1              0 112224455 7789988  678888 7665442            


Q ss_pred             -----eEEeccC--CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEcCCcee
Q 014302          231 -----PIRRGFG--GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTL  302 (427)
Q Consensus       231 -----~~~~~~~--~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i  302 (427)
                           .+..|..  .+.+++|+|+++.|++++.|++|++||+++..+ ..+.+|...|.+++|+|+|++|++++ .++.+
T Consensus       343 ~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~Dgtv  421 (524)
T 2j04_B          343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-ADGSL  421 (524)
T ss_dssp             HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TTTEE
T ss_pred             CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CCCEE
Confidence                 1233432  478999999999999999999999999998876 44558999999999999999998775 45577


Q ss_pred             eeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec-cCceEEEeeeeee
Q 014302          303 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFI  381 (427)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~-~~~~~~~~~~~~~  381 (427)
                      ++|++..+  .+.++..      .........|.+++|+|+|+.+..   .. +     +.+|+.. ++.++     ..+
T Consensus       422 ~lwd~~~~--~~~~~~~------~~~~~~~~~v~~v~~sp~g~~~~~---~~-~-----~~~~~~~~~g~~~-----~~l  479 (524)
T 2j04_B          422 IITNAARR--LLHGIKN------SSATQKSLRLWKWDYSIKDDKYRI---DS-S-----YEVYPLTVNDVSK-----AKI  479 (524)
T ss_dssp             ECCBSCSS--TTTCC------------CCCCEEEECBCCSSSCEEEE---CC-C-----CCCCC----------------
T ss_pred             EEEechHh--hcccccc------CccceeeeEEEEeccCCCCCeEEc---cC-C-----ceecccccCCcce-----eee
Confidence            77776443  1111100      000001124689999999996633   21 1     3344332 12221     112


Q ss_pred             eCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccccCCC
Q 014302          382 RGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRSHL  425 (427)
Q Consensus       382 ~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~~~  425 (427)
                      .+...  ...+++|+|+...+.+||.|..+|.|.+|.|--+-|+
T Consensus       480 ~gh~~--~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~~~  521 (524)
T 2j04_B          480 DAHGI--NITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEHHH  521 (524)
T ss_dssp             --CCC--SCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC---
T ss_pred             cCCCc--eEEEEECCCCCCccHHHHhhccCceEEEEEccccccc
Confidence            23332  3568999998766889999999999999999887665

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.94  E-value=6.1e-26  Score=212.69  Aligned_cols=196  Identities=13%  Similarity=0.082  Sum_probs=148.0

Q ss_pred             ceeeeEEcCCCCEEEEEe--CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .+++++|||||++||+++  .|++|+|||+...  .... ...|...|.+++|+||| ++|++++++.+.+|+..     
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~--~~~~-~~~~~~~V~~v~fspdg-~~l~s~s~~~~~~~~~~-----  205 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDL--TEKF-EIETRGEVKDLHFSTDG-KVVAYITGSSLEVISTV-----  205 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTT--EEEE-EEECSSCCCEEEECTTS-SEEEEECSSCEEEEETT-----
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC--cEEE-EeCCCCceEEEEEccCC-ceEEeccceeEEEEEec-----
Confidence            588999999999887654  6899999999877  3332 23577889999999999 78888888888887765     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                          .+              ......                          ....|...+.+++|+|+++++++++.|+
T Consensus       206 ----~~--------------~~~~~~--------------------------~~~~~~~~v~~v~fspdg~~l~~~s~d~  241 (365)
T 4h5i_A          206 ----TG--------------SCIARK--------------------------TDFDKNWSLSKINFIADDTVLIAASLKK  241 (365)
T ss_dssp             ----TC--------------CEEEEE--------------------------CCCCTTEEEEEEEEEETTEEEEEEEESS
T ss_pred             ----cC--------------cceeee--------------------------ecCCCCCCEEEEEEcCCCCEEEEEecCC
Confidence                11              000000                          1112455688999999999999988887


Q ss_pred             ----cEEEEEcCCCCcc-----ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--C-ccccccccccccc
Q 014302          259 ----TFYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--S-LDAHLLPVDLPDI  326 (427)
Q Consensus       259 ----~v~iwd~~~~~~~-----~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~-~~~~~~~~~~~~~  326 (427)
                          .+++||+......     .+..|...|.+++|+|||++|++++.+ +.+++|++.+...  . +.+          
T Consensus       242 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D-~~V~iwd~~~~~~~~~~~~g----------  310 (365)
T 4h5i_A          242 GKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND-NSIALVKLKDLSMSKIFKQA----------  310 (365)
T ss_dssp             SCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT-SCEEEEETTTTEEEEEETTS----------
T ss_pred             cceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC-CEEEEEECCCCcEEEEecCc----------
Confidence                5888998776542     233788999999999999999987654 5888888776421  1 122          


Q ss_pred             eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                          |.+.|++|+|||||++||+   ++.|   ++|+||++..+
T Consensus       311 ----H~~~V~~v~fSpdg~~laS---~S~D---~tvrvw~ip~~  344 (365)
T 4h5i_A          311 ----HSFAITEVTISPDSTYVAS---VSAA---NTIHIIKLPLN  344 (365)
T ss_dssp             ----SSSCEEEEEECTTSCEEEE---EETT---SEEEEEECCTT
T ss_pred             ----ccCCEEEEEECCCCCEEEE---EeCC---CeEEEEEcCCC
Confidence                3458999999999999999   6667   78999999643

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=1.1e-25  Score=229.08  Aligned_cols=235  Identities=14%  Similarity=0.179  Sum_probs=168.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++|+.|++|+|||+...  .......+|...|.+++|+|++..+++++.|++|++|++.       
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~-------  502 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL-------  502 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-------
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCC--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC-------
Confidence            7999999999999999999999999999877  4555567899999999999999666666677999999975       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC--CcccC-----------------ceEEeccCCeEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--FPGLG-----------------TPIRRGFGGLSI  241 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~l~~~-----------------~~~~~~~~~v~~  241 (427)
                        ..             ...........| ...|.+++|+|++.  .+.++                 ..+..|.+.|.+
T Consensus       503 --~~-------------~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~  566 (694)
T 3dm0_A          503 --GE-------------CKYTISEGGEGH-RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVST  566 (694)
T ss_dssp             --SC-------------EEEEECSSTTSC-SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             --CC-------------cceeeccCCCCC-CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence              00             001111112233 67799999999873  23322                 123458889999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccccccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLL  319 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~  319 (427)
                      ++|+|++++|++++.||.|++||+++++......+...+.+++|+|++.+|+++ .++ .+++|++.....  .+..+..
T Consensus       567 v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~~-~i~iwd~~~~~~~~~~~~~~~  644 (694)
T 3dm0_A          567 VAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA-TEH-GIKIWDLESKSIVEDLKVDLK  644 (694)
T ss_dssp             EEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE-ETT-EEEEEETTTTEEEEEECCCCC
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE-cCC-CEEEEECCCCCChhhhccccc
Confidence            999999999999999999999999988875555566789999999999988765 344 588888766421  1111100


Q ss_pred             cc----cccc-ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          320 PV----DLPD-IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       320 ~~----~~~~-~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      ..    .... .....+...+++++|+|+|++|++   ++.|   |+|+||++.
T Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s---gs~D---g~i~iW~i~  692 (694)
T 3dm0_A          645 AEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS---GYTD---GVIRVWGIG  692 (694)
T ss_dssp             ----------------CCCCEEEEEECTTSSEEEE---EETT---SEEEEEEC-
T ss_pred             cccccccccccccCCceeEEeeeEEEcCCCCEEEE---EcCC---CeEEEEecc
Confidence            00    0000 000001114789999999999999   6666   789999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=9.6e-26  Score=231.05  Aligned_cols=256  Identities=15%  Similarity=0.170  Sum_probs=185.4

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC--CCceEEEecCCeEEEEec
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAP  172 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~la~g~~~~i~iw~~  172 (427)
                      +.+|  .|++++|+|++++|++|+.||+|+||++............+|...|++++|+|+  +..+++++.++.|++|++
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~   84 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   84 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence            3455  899999999999999999999999999986533455566789999999999988  744455556699999999


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC--CCE
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT--GDY  250 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~--g~~  250 (427)
                      .         .+              ......                          .+..|...|.+++|+|+  +++
T Consensus        85 ~---------~~--------------~~~~~~--------------------------~~~~h~~~V~~v~~sp~~~~~~  115 (753)
T 3jro_A           85 E---------NG--------------RWSQIA--------------------------VHAVHSASVNSVQWAPHEYGPL  115 (753)
T ss_dssp             E---------TT--------------EEEEEE--------------------------EECCCSSCEEEEEECCGGGCSE
T ss_pred             C---------CC--------------cccccc--------------------------cccCCCCCeEEEEECCCCCCCE
Confidence            7         11              111111                          22336678999999999  999


Q ss_pred             EEEEecCCcEEEEEcCCCCc---cccccCCCCeeEEEECC-------------CCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302          251 FFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDP-------------EGRMILLAFAGSLTLGSIHFASKPPSL  314 (427)
Q Consensus       251 l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~v~~sp-------------dg~~l~~~~~~~~~i~~~~~~~~~~~~  314 (427)
                      |++++.||.|++||+++...   .....|...|.+++|+|             ++..+++++. ++.+++|++.......
T Consensus       116 l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~-dg~I~iwd~~~~~~~~  194 (753)
T 3jro_A          116 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTY  194 (753)
T ss_dssp             EEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEET-TSCEEEEEEETTTTEE
T ss_pred             EEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEEC-CCeEEEEeccCCcccc
Confidence            99999999999999988754   23337889999999999             5888887655 5588899887642110


Q ss_pred             cccccccccccceeeccCCceeEEEECCC---CCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCce
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV  391 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~---g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  391 (427)
                      ..        ......+.+.|.+++|+|+   +++|++   ++.|   |+|++||+.++........  ...........
T Consensus       195 ~~--------~~~~~~h~~~V~~l~~sp~~~~~~~l~s---~s~D---g~I~iwd~~~~~~~~~~~~--~~~~~~~~~v~  258 (753)
T 3jro_A          195 VL--------ESTLEGHSDWVRDVAWSPTVLLRSYLAS---VSQD---RTCIIWTQDNEQGPWKKTL--LKEEKFPDVLW  258 (753)
T ss_dssp             EE--------EEEECCCSSCEEEEEECCCCSSSEEEEE---EESS---SCEEEEEESSSSSCCBCCB--SSSSCCSSCCC
T ss_pred             ee--------eeeecCCCCcEEEEEeccCCCCCCEEEE---EecC---CEEEEecCCCCCCcceeEE--eccCCCCCceE
Confidence            00        0111224558999999999   899988   4555   6699999988642111110  11111223356


Q ss_pred             eEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          392 AFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       392 ~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      +++|.|+   |..|++|..||.|.+|++--
T Consensus       259 ~l~~spd---g~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          259 RASWSLS---GNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CEEECTT---TCCEEEECSSSCEECCBCCS
T ss_pred             EEEEcCC---CCEEEEEcCCCEEEEEecCC
Confidence            8999986   77899999999999999763

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=3.4e-25  Score=239.61  Aligned_cols=262  Identities=11%  Similarity=0.168  Sum_probs=199.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|+|++||+|+.|++|+|||+.+.  .......+|...|.+++|+|++..+++++.++.|++||+.       
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-------  687 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-------  687 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-------
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCC--CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC-------
Confidence            8999999999999999999999999999887  4555667899999999999999544444566999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC--CcccC--------------c---eEEeccCCeEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR--FPGLG--------------T---PIRRGFGGLSI  241 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~--~l~~~--------------~---~~~~~~~~v~~  241 (427)
                        ++                ..+..+..| ...|.+++|+|++.  +++++              .   .+..|...|.+
T Consensus       688 --~~----------------~~~~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~  748 (1249)
T 3sfz_A          688 --TG----------------KLVHTYDEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNH  748 (1249)
T ss_dssp             --TC----------------CEEEEEECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEE
T ss_pred             --CC----------------ceEEEEcCC-CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEE
Confidence              22                344455555 78899999999644  33222              1   23457889999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCccccc--------------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--------------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  307 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--------------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~  307 (427)
                      ++|+|++++|++++.||.|++||+++.+.....              .....+.+++|+|+|+.+++++  ++.+.+|++
T Consensus       749 ~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~  826 (1249)
T 3sfz_A          749 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDI  826 (1249)
T ss_dssp             EEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEET
T ss_pred             EEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEe
Confidence            999999999999999999999999877542111              2344788999999999999875  346777776


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCC
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN  387 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~  387 (427)
                      .......           .....+.+.|.+++|+|+++++++   ++.+   |.|++|++.++..+..     +.+.  .
T Consensus       827 ~~~~~~~-----------~~~~~~~~~v~~~~~sp~~~~l~~---~~~d---g~v~vwd~~~~~~~~~-----~~~h--~  882 (1249)
T 3sfz_A          827 HTSGLLA-----------EIHTGHHSTIQYCDFSPYDHLAVI---ALSQ---YCVELWNIDSRLKVAD-----CRGH--L  882 (1249)
T ss_dssp             TTCCEEE-----------EEECSSSSCCCEEEECSSTTEEEE---ECSS---SCEEEEETTTTEEEEE-----ECCC--S
T ss_pred             cCCCcee-----------EEcCCCCCceEEEEEcCCCCEEEE---EeCC---CeEEEEEcCCCceeee-----cCCC--c
Confidence            6542100           011124458999999999999998   5666   6699999998765422     2222  2


Q ss_pred             CCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          388 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       388 ~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ....+++|.|+   |..|+++..||.|.+|++
T Consensus       883 ~~v~~v~~spd---g~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          883 SWVHGVMFSPD---GSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             SCEEEEEECTT---SSEEEEEETTSCEEEEEH
T ss_pred             cceEEEEECCC---CCEEEEEeCCCeEEEEEc
Confidence            23668999985   778899999999999985

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=4.8e-26  Score=217.93  Aligned_cols=245  Identities=9%  Similarity=0.095  Sum_probs=173.6

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      ..|.+++|+|||+++|+++.|++|+  |....     ....+|...|.+++|+|+|       .++.+.+|+.+      
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~-----~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~------   75 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYA-----KDINCNSKNLFHVKEFPLE-------FENKLDFELAQ------   75 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEE--EECCC-----SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCC------
T ss_pred             ccEEEEEECCCCCEEEEEcCCceee--ccccc-----ceecCCCccEEEEEECCCC-------CcceEEEEeCC------
Confidence            3789999999999999999999998  63333     1225899999999999998       34444445433      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhc-ccCCCceeeeEeCCCCCCcccCce---------------EEeccC-----C
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLR-SQNGEQITALSWGPDGRFPGLGTP---------------IRRGFG-----G  238 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~---------------~~~~~~-----~  238 (427)
                                            ....+. .+ ...|.+++|+|||++++++..               +. |..     .
T Consensus        76 ----------------------~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           76 ----------------------QNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             ----------------------SSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTC
T ss_pred             ----------------------CceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCcccccc
Confidence                                  011122 22 678999999999998774321               12 343     4


Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEEcCCCCc--------ccc----ccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS--------EPW----SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~--------~~~----~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                      +.+++|||||++||+|+.||+|+|||+..+..        ..+    .+|...|.+++|+|||  ++++ +.++.+++|+
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laas-s~D~tVrlWd  208 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAA-LSNNSVFSMT  208 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEE-ETTCCEEEEC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEE-eCCCeEEEEE
Confidence            99999999999999999999999999998753        222    3677899999999999  5555 4456888888


Q ss_pred             eCCCCCCccccccccccccceee--ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC
Q 014302          307 FASKPPSLDAHLLPVDLPDIVSL--TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP  384 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~  384 (427)
                      +.......          ....+  .+...|.+++|+  |+.||++   + +   ++|++||+.++......     .+.
T Consensus       209 ~~~~~~~~----------~~~tL~~~h~~~V~svaFs--g~~LASa---~-~---~tIkLWd~~~~~~~~~~-----~gh  264 (588)
T 2j04_A          209 VSASSHQP----------VSRMIQNASRRKITDLKIV--DYKVVLT---C-P---GYVHKIDLKNYSISSLK-----TGS  264 (588)
T ss_dssp             CCSSSSCC----------CEEEEECCCSSCCCCEEEE--TTEEEEE---C-S---SEEEEEETTTTEEEEEE-----CSC
T ss_pred             CCCCcccc----------ceeeecccccCcEEEEEEE--CCEEEEE---e-C---CeEEEEECCCCeEEEEE-----cCC
Confidence            87653110          00011  123479999999  6899984   3 2   56999999987764221     132


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ..  ....++| |...++..|+++..+|. .+|.+
T Consensus       265 ~~--~V~~va~-~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          265 LE--NFHIIPL-NHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             CS--CCCEEEE-TTCSSCEEEEECSSCEE-EEEES
T ss_pred             Cc--eEEEEEe-eeCCCCCEEEEEcCCCC-EEEee
Confidence            22  3557888 22334789999999999 77654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=7.9e-25  Score=202.76  Aligned_cols=240  Identities=12%  Similarity=0.052  Sum_probs=178.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-cceeeccCCcCCeeEEEEccCCC-ceEEEecCCeEEEEec-cCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGG-RSLSVGCKGGICIWAP-SYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~-~~la~g~~~~i~iw~~-~~~~~  177 (427)
                      .|++++|+|++++|++++.|+.|+||++..... ........|...|.+++|+|++. .+++++.++.|++|++ .    
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~----   88 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG----   88 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS----
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc----
Confidence            799999999999999999999999999987731 12344457899999999999995 4555556799999999 6    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEe--ccCCeEEEEEccCCCEEEEEe
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRR--GFGGLSILKWSPTGDYFFAAK  255 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~  255 (427)
                           .+              .  .                           ..+..  |...|.+++|+| +++|++++
T Consensus        89 -----~~--------------~--~---------------------------~~~~~~~~~~~v~~l~~~~-~~~l~s~~  119 (342)
T 1yfq_A           89 -----SP--------------S--F---------------------------QALTNNEANLGICRICKYG-DDKLIAAS  119 (342)
T ss_dssp             -----SS--------------S--E---------------------------EECBSCCCCSCEEEEEEET-TTEEEEEE
T ss_pred             -----CC--------------c--e---------------------------EeccccCCCCceEEEEeCC-CCEEEEEc
Confidence                 11              0  0                           02233  667899999999 99999999


Q ss_pred             cCCcEEEEEcCC---------CCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC-CCCCcccccccccccc
Q 014302          256 FDGTFYLWETNT---------WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS-KPPSLDAHLLPVDLPD  325 (427)
Q Consensus       256 ~dg~v~iwd~~~---------~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~  325 (427)
                      .|+.|++||+++         .+......+...+.+++|+|++  ++++ ..++.+.+|++.. ......          
T Consensus       120 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~-~~d~~i~i~d~~~~~~~~~~----------  186 (342)
T 1yfq_A          120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVG-MNNSQVQWFRLPLCEDDNGT----------  186 (342)
T ss_dssp             TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEE-ESTTEEEEEESSCCTTCCCE----------
T ss_pred             CCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEE-eCCCeEEEEECCccccccce----------
Confidence            999999999987         6654444588999999999987  6655 4555888888876 321110          


Q ss_pred             ceeeccCCceeEEEECC-CCCEEEEEEecCCCcceeEEEEEEeccC------ceEEEeeeeeeeCCCC-------CCCce
Q 014302          326 IVSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRT------PLISLSLIGFIRGPGD-------NPKPV  391 (427)
Q Consensus       326 ~~~~~~~~~i~~v~~sp-~g~~La~~~~~~~d~~~g~i~vwd~~~~------~~~~~~~~~~~~~~~~-------~~~~~  391 (427)
                      .....+...|.+++|+| ++++|++   ++.|   |.|++|++...      ....     .+.....       .....
T Consensus       187 ~~~~~~~~~i~~i~~~~~~~~~l~~---~~~d---g~i~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~  255 (342)
T 1yfq_A          187 IEESGLKYQIRDVALLPKEQEGYAC---SSID---GRVAVEFFDDQGDDYNSSKRF-----AFRCHRLNLKDTNLAYPVN  255 (342)
T ss_dssp             EEECSCSSCEEEEEECSGGGCEEEE---EETT---SEEEEEECCTTCCSTTCTTCE-----EEECCCCCTTCCSSCCCEE
T ss_pred             eeecCCCCceeEEEECCCCCCEEEE---EecC---CcEEEEEEcCCCcccccccce-----eeecccccccccccceeEE
Confidence            11122344899999999 9999999   4555   67999999765      3321     1122211       22467


Q ss_pred             eEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          392 AFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       392 ~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      +++|.|+   +..|++|..+|.|.+|++.
T Consensus       256 ~~~~s~~---~~~l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          256 SIEFSPR---HKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             EEEECTT---TCCEEEEETTSCEEEEETT
T ss_pred             EEEEcCC---CCEEEEecCCceEEEEcCc
Confidence            8999985   6789999999999999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.94  E-value=7.4e-25  Score=219.23  Aligned_cols=273  Identities=13%  Similarity=0.198  Sum_probs=197.8

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC--cceeeccCCcCC-eeEEEEcc--CCCceEEEe-cCCeEEEEecc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRD-VKVLEWRP--NGGRSLSVG-CKGGICIWAPS  173 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~-v~~l~~sp--~~~~~la~g-~~~~i~iw~~~  173 (427)
                      ..|++++|+|+|++||+++ ++.|+||++.....  .......+|... |++++|+|  ++ .+|+++ .++.|++|++.
T Consensus        19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~   96 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWT   96 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEE
T ss_pred             CceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCC
Confidence            4799999999999999998 88999999985411  344556789999 99999999  99 555555 56999999995


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-------------------eEEe
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-------------------PIRR  234 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-------------------~~~~  234 (427)
                      ....                 ...........+..+ ...|.+++|+|+|++++.+.                   .+..
T Consensus        97 ~~~~-----------------~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~  158 (615)
T 1pgu_A           97 FDKE-----------------SNSVEVNVKSEFQVL-AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG  158 (615)
T ss_dssp             EEGG-----------------GTEEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCS
T ss_pred             CCcc-----------------cccccccccchhhcc-cccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeec
Confidence            0000                 000011334445555 78899999999999865432                   1234


Q ss_pred             ccCCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCCcc-ccccCCC---CeeEEEECCC-CCEEEEEEcCCceeeeeeeC
Q 014302          235 GFGGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWTSE-PWSSTSG---FVTGATWDPE-GRMILLAFAGSLTLGSIHFA  308 (427)
Q Consensus       235 ~~~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~---~v~~v~~spd-g~~l~~~~~~~~~i~~~~~~  308 (427)
                      |...|.+++|+|+++ .|++++.|+.|++||+++.+.. .+..|..   .|.+++|+|+ +++|++++. ++.+++|++.
T Consensus       159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~  237 (615)
T 1pgu_A          159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFDGK  237 (615)
T ss_dssp             CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-TCCEEEEETT
T ss_pred             CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-CCeEEEEECC
Confidence            778899999999998 7889999999999999887764 3346777   8999999999 999988755 4588888876


Q ss_pred             CCCCCccccccccccccceee-----ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeC
Q 014302          309 SKPPSLDAHLLPVDLPDIVSL-----TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRG  383 (427)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~  383 (427)
                      ....             ...+     .+...|.+++|+ ++++|++   ++.|   +.|++||++++..+......   .
T Consensus       238 ~~~~-------------~~~~~~~~~~~~~~v~~~~~~-~~~~l~~---~~~d---~~i~~wd~~~~~~~~~~~~~---~  294 (615)
T 1pgu_A          238 SGEF-------------LKYIEDDQEPVQGGIFALSWL-DSQKFAT---VGAD---ATIRVWDVTTSKCVQKWTLD---K  294 (615)
T ss_dssp             TCCE-------------EEECCBTTBCCCSCEEEEEES-SSSEEEE---EETT---SEEEEEETTTTEEEEEEECC---T
T ss_pred             CCCE-------------eEEecccccccCCceEEEEEc-CCCEEEE---EcCC---CcEEEEECCCCcEEEEEcCC---C
Confidence            5421             0111     344589999999 9999999   4555   67999999987765322111   0


Q ss_pred             CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          384 PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       384 ~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      ........++.|.    .+..++++..+|.|.+|++.
T Consensus       295 ~~~~~~~~~~~~~----~~~~l~~~~~~g~i~~~d~~  327 (615)
T 1pgu_A          295 QQLGNQQVGVVAT----GNGRIISLSLDGTLNFYELG  327 (615)
T ss_dssp             TCGGGCEEEEEEE----ETTEEEEEETTSCEEEEETT
T ss_pred             CcccCceeEEEeC----CCCeEEEEECCCCEEEEECC
Confidence            0111224455553    36788899999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.94  E-value=8.6e-26  Score=212.98  Aligned_cols=239  Identities=17%  Similarity=0.271  Sum_probs=174.6

Q ss_pred             ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCce
Q 014302          135 ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI  214 (427)
Q Consensus       135 ~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  214 (427)
                      ......+|.+.|++++|+|++..+++++.|++|+||++.         ++                .....+..| ...|
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~---------~~----------------~~~~~~~~h-~~~v  111 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL---------TS----------------QKTHAIKLH-CPWV  111 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT---------TT----------------EEEEEEECC-CTTC
T ss_pred             EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CC----------------ccceEEecC-CCCE
Confidence            344557899999999999999555555567999999987         11                334445555 7789


Q ss_pred             eeeEeCCCCCCcccCc------------------------eEEeccCCeEEEEEccCC-CEEEEEecCCcEEEEEcCCCC
Q 014302          215 TALSWGPDGRFPGLGT------------------------PIRRGFGGLSILKWSPTG-DYFFAAKFDGTFYLWETNTWT  269 (427)
Q Consensus       215 ~~~~~spdg~~l~~~~------------------------~~~~~~~~v~~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~  269 (427)
                      .+++|+|+|++++++.                        .+..|.+.+.++.|+|++ ..|++++.|++|++||+++++
T Consensus       112 ~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~  191 (380)
T 3iz6_a          112 MECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ  191 (380)
T ss_dssp             CCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred             EEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence            9999999999866442                        234577889999999975 468899999999999999887


Q ss_pred             cccc------ccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECC
Q 014302          270 SEPW------SSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA  342 (427)
Q Consensus       270 ~~~~------~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  342 (427)
                      ....      ..|...|.+++|++ +++++++++ .++.+++|++......+           .....+.+.|.+++|+|
T Consensus       192 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs-~D~~v~~wd~~~~~~~~-----------~~~~~h~~~v~~v~~~p  259 (380)
T 3iz6_a          192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGS-CDTTVRLWDLRITSRAV-----------RTYHGHEGDINSVKFFP  259 (380)
T ss_dssp             EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE-TTSCEEEEETTTTCCCC-----------EEECCCSSCCCEEEECT
T ss_pred             EEEEeecccCCCCccCeEEEEeecCCCCEEEEEE-CCCeEEEEECCCCCcce-----------EEECCcCCCeEEEEEec
Confidence            6322      36888999999987 778887764 55588888876421110           11112445899999999


Q ss_pred             CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          343 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       343 ~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      +|++|++   ++.|   |+|+|||++++..+..................+++|.|+   |.+|++|..+|.|.+|++.
T Consensus       260 ~~~~l~s---~s~D---~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---g~~l~~g~~dg~i~vwd~~  328 (380)
T 3iz6_a          260 DGQRFGT---GSDD---GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSIS---GRLLFAGYSNGDCYVWDTL  328 (380)
T ss_dssp             TSSEEEE---ECSS---SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSS---SSEEEEECTTSCEEEEETT
T ss_pred             CCCeEEE---EcCC---CeEEEEECCCCcEEEEecccccccccccCceEEEEECCC---CCEEEEEECCCCEEEEECC
Confidence            9999999   6777   679999999887654321111000111122568999986   8899999999999999863

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.94  E-value=4.2e-24  Score=202.50  Aligned_cols=258  Identities=10%  Similarity=0.120  Sum_probs=178.7

Q ss_pred             ceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeec-----------cCCcCCeeEEEEccCCCceEEEe-cCCeE
Q 014302          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILT-----------SDSQRDVKVLEWRPNGGRSLSVG-CKGGI  167 (427)
Q Consensus       101 ~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~-----------~~~~~~v~~l~~sp~~~~~la~g-~~~~i  167 (427)
                      .|++++|+| ++++||+|+.|+.|+||++...........           ..|...|.+++|+|++..+|+++ .++.|
T Consensus        45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  124 (408)
T 4a11_B           45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL  124 (408)
T ss_dssp             CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred             cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence            899999999 999999999999999999987732222111           24889999999999544555555 56999


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-  246 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-  246 (427)
                      ++|++.         .+                .....+                           .+...+.++.|+| 
T Consensus       125 ~iwd~~---------~~----------------~~~~~~---------------------------~~~~~~~~~~~~~~  152 (408)
T 4a11_B          125 KVWDTN---------TL----------------QTADVF---------------------------NFEETVYSHHMSPV  152 (408)
T ss_dssp             EEEETT---------TT----------------EEEEEE---------------------------ECSSCEEEEEECSS
T ss_pred             EEeeCC---------CC----------------ccceec---------------------------cCCCceeeeEeecC
Confidence            999997         11                111111                           1344567777776 


Q ss_pred             --CCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc---cccccc
Q 014302          247 --TGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL---DAHLLP  320 (427)
Q Consensus       247 --~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~---~~~~~~  320 (427)
                        ++.++++++.|+.|++||+++++.. .+..|...|.+++|+|++++++++++.++.+++|++......+   ..+...
T Consensus       153 ~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  232 (408)
T 4a11_B          153 STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK  232 (408)
T ss_dssp             CSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC
T ss_pred             CCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc
Confidence              4458999999999999999988764 3447899999999999999644445666689999887643211   111100


Q ss_pred             cc-cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE------------------------
Q 014302          321 VD-LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL------------------------  375 (427)
Q Consensus       321 ~~-~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~------------------------  375 (427)
                      .. ........+...|.+++|+|++++|++   ++.|   |.|++||+.++.....                        
T Consensus       233 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (408)
T 4a11_B          233 KSQAVESANTAHNGKVNGLCFTSDGLHLLT---VGTD---NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSE  306 (408)
T ss_dssp             SCCCTTTSSCSCSSCEEEEEECTTSSEEEE---EETT---SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSC
T ss_pred             cceeeccccccccCceeEEEEcCCCCEEEE---ecCC---CeEEEEECCCCccceeccccccccccccceeEEecCCCce
Confidence            00 001111235568999999999999999   4455   5699999987543211                        


Q ss_pred             ------------------eeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          376 ------------------SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       376 ------------------~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                                        .+...+.+  ......+++|+|+   +.+|++|..||.|.+|++--
T Consensus       307 ~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~---~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          307 FVFVPYGSTIAVYTVYSGEQITMLKG--HYKTVDCCVFQSN---FQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEECC--CSSCEEEEEEETT---TTEEEEEETTSCEEEEEECC
T ss_pred             EEEEecCCEEEEEECcCCcceeeecc--CCCeEEEEEEcCC---CCEEEEECCCCeEEEEeCCC
Confidence                              01111112  2234668999986   77899999999999999743

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.94  E-value=9.5e-25  Score=209.33  Aligned_cols=253  Identities=16%  Similarity=0.259  Sum_probs=177.6

Q ss_pred             ceeeeEEcCC-CCEEEEEeCCCeEEEEEccCC--------CCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEE
Q 014302          101 DLQGVSWHQH-KHIVAFISGSTQVIVRDYEDS--------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIW  170 (427)
Q Consensus       101 ~V~~l~~sp~-g~~lat~~~d~~v~vwd~~~~--------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw  170 (427)
                      .|++++|+|+ +.+||+++.||.|+||++...        .........+|...|.+++|+|++..+|++|+ ++.|++|
T Consensus       130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw  209 (430)
T 2xyi_A          130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW  209 (430)
T ss_dssp             CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEE
T ss_pred             cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEE
Confidence            7899999998 679999999999999999862        12344555679999999999999964666664 5999999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCC
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGD  249 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~  249 (427)
                      ++.....                     ....+.                       ....+..|...|.+++|+| ++.
T Consensus       210 d~~~~~~---------------------~~~~~~-----------------------~~~~~~~h~~~v~~v~~~p~~~~  245 (430)
T 2xyi_A          210 DINATPK---------------------EHRVID-----------------------AKNIFTGHTAVVEDVAWHLLHES  245 (430)
T ss_dssp             ETTSCCB---------------------GGGEEE-----------------------CSEEECCCSSCEEEEEECSSCTT
T ss_pred             eCCCCCC---------------------CCceec-----------------------cceeecCCCCCEeeeEEeCCCCC
Confidence            9971000                     000000                       0112335677899999999 667


Q ss_pred             EEEEEecCCcEEEEEcCCCC---c-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccc
Q 014302          250 YFFAAKFDGTFYLWETNTWT---S-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD  325 (427)
Q Consensus       250 ~l~~~~~dg~v~iwd~~~~~---~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  325 (427)
                      .|++++.|+.|++||+++..   . ..+..|...|.+++|+|++++++++++.++.+.+|++......+           
T Consensus       246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~-----------  314 (430)
T 2xyi_A          246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL-----------  314 (430)
T ss_dssp             EEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCS-----------
T ss_pred             EEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCe-----------
Confidence            88899999999999999874   2 23337889999999999998654455666689999887632110           


Q ss_pred             ceeeccCCceeEEEECCCCCE-EEEEEecCCCcceeEEEEEEeccCceEEE---------eeeeeeeCCCCCCCceeEEe
Q 014302          326 IVSLTGSQGIEKIAWDASGER-LAVSYKGGDDIYKGLIAIYDARRTPLISL---------SLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       326 ~~~~~~~~~i~~v~~sp~g~~-La~~~~~~~d~~~g~i~vwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~f  395 (427)
                      .....+.+.|.+++|+|+++. |++   ++.|   +.|+|||+........         ......  .+....+.+++|
T Consensus       315 ~~~~~h~~~v~~i~~sp~~~~~l~s---~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~  386 (430)
T 2xyi_A          315 HSFESHKDEIFQVQWSPHNETILAS---SGTD---RRLHVWDLSKIGEEQSTEDAEDGPPELLFIH--GGHTAKISDFSW  386 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCTTEEEE---EETT---SCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC--CCCSSCEEEEEE
T ss_pred             EEeecCCCCEEEEEECCCCCCEEEE---EeCC---CcEEEEeCCCCccccCccccccCCcceEEEc--CCCCCCceEEEE
Confidence            111124458999999999964 666   4455   5699999987221100         000111  122233678999


Q ss_pred             ccCCCCCc-eeEEEeeCceEEEEec
Q 014302          396 HDKFKQGP-LLSVCWSSGFCCTYPL  419 (427)
Q Consensus       396 ~~~~~~g~-~l~v~~~~g~i~~~~~  419 (427)
                      +|+   +. +|+.+..+|.|++|.+
T Consensus       387 ~p~---~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          387 NPN---EPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             CSS---STTEEEEEETTSEEEEEEE
T ss_pred             CCC---CCCEEEEEECCCCEEEeEc
Confidence            986   55 8888889999999986

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.8e-25  Score=204.57  Aligned_cols=236  Identities=17%  Similarity=0.172  Sum_probs=171.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-----CeEEEEeccCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-----~~i~iw~~~~~  175 (427)
                      .|++++|+|++++|++++.|+.|++||+...  ...... .+...|.+++|+|++..+++++.+     +.+.+|++...
T Consensus        76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~  152 (369)
T 3zwl_B           76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNG--QCVATW-KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD  152 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTC--CEEEEE-ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEe-ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence            7999999999999999999999999999877  333332 378899999999999656666666     89999999722


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhccc-CCCceeeeEeCCCCCCcccCc------------------eEEecc
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ-NGEQITALSWGPDGRFPGLGT------------------PIRRGF  236 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~------------------~~~~~~  236 (427)
                      .........           ..   .....+..+ ....+.+++|+|++++++.+.                  .+..|.
T Consensus       153 ~~~~~~~~~-----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  218 (369)
T 3zwl_B          153 SATHELTKV-----------SE---EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE  218 (369)
T ss_dssp             TTTCCEEEE-----------CS---SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred             ccceeeccc-----------cc---ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence            211111000           00   011111222 123889999999998755321                  134477


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc-------------eee
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL-------------TLG  303 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~-------------~i~  303 (427)
                      ..+.+++|+|++++|++++.|+.|++||+++.+......+...+..++|+|+++++++++.++.             .+.
T Consensus       219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~  298 (369)
T 3zwl_B          219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR  298 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred             CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence            8999999999999999999999999999999887666668889999999999999998876653             344


Q ss_pred             eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      +|++......            .....+.+.|.+++|+|++++|++   ++.|   |.|++|+++.+.
T Consensus       299 ~~d~~~~~~~------------~~~~~~~~~v~~~~~s~~~~~l~s---~~~d---g~v~iw~~~~~~  348 (369)
T 3zwl_B          299 FYHKIFEEEI------------GRVQGHFGPLNTVAISPQGTSYAS---GGED---GFIRLHHFEKSY  348 (369)
T ss_dssp             EEETTTCCEE------------EEEECCSSCEEEEEECTTSSEEEE---EETT---SEEEEEEECHHH
T ss_pred             EEecCCCcch------------hheecccCcEEEEEECCCCCEEEE---EcCC---CeEEEEECcccc
Confidence            4443332110            111224558999999999999999   5556   779999998754

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.94  E-value=9.6e-25  Score=207.33  Aligned_cols=228  Identities=16%  Similarity=0.234  Sum_probs=172.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++|+.||.|+|||+...  ........|...|.+++|+  +..+++++.++.|++|++...+    
T Consensus       136 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~----  207 (401)
T 4aez_A          136 YVASVKWSHDGSFLSVGLGNGLVDIYDVESQ--TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN----  207 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS----
T ss_pred             CEEEEEECCCCCEEEEECCCCeEEEEECcCC--eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc----
Confidence            7999999999999999999999999999877  4555666899999999995  3245555566999999997111    


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------e---EEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------P---IRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------~---~~~~~~~v~~~~  243 (427)
                                          .....+..| ...|.+++|+|++++++.+.              .   +..|...|.+++
T Consensus       208 --------------------~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~  266 (401)
T 4aez_A          208 --------------------HQIGTLQGH-SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA  266 (401)
T ss_dssp             --------------------CEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEE
T ss_pred             --------------------ceeeEEcCC-CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEE
Confidence                                123334455 78899999999998865432              1   234778899999


Q ss_pred             EccCCCEEE-EEe--cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEE-cCCceeeeeeeCCCCCCcccccc
Q 014302          244 WSPTGDYFF-AAK--FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAF-AGSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       244 ~sp~g~~l~-~~~--~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      |+|++..++ +++  .|+.|++||+++++......+...+.+++|+|+++++++++ ..++.+.+|++.......     
T Consensus       267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~-----  341 (401)
T 4aez_A          267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTK-----  341 (401)
T ss_dssp             ECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEE-----
T ss_pred             ECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcccee-----
Confidence            999886555 554  79999999999888766667788999999999999999864 356789999887641100     


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                           ......+.+.|.+++|+|+|++|++   ++.|   |.|++|++.+++.+
T Consensus       342 -----~~~~~~h~~~v~~~~~s~dg~~l~s---~~~d---g~i~iw~~~~~~~~  384 (401)
T 4aez_A          342 -----QVDIPAHDTRVLYSALSPDGRILST---AASD---ENLKFWRVYDGDHV  384 (401)
T ss_dssp             -----EEEEECCSSCCCEEEECTTSSEEEE---ECTT---SEEEEEECCC----
T ss_pred             -----EEEecCCCCCEEEEEECCCCCEEEE---EeCC---CcEEEEECCCCccc
Confidence                 0111224458999999999999999   5666   77999999887754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.93  E-value=4.2e-24  Score=197.60  Aligned_cols=231  Identities=14%  Similarity=0.147  Sum_probs=167.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++++.|+.|++|+....  ........+...+..+.+++++..+++++.++.+++|++..      
T Consensus        88 ~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~------  159 (340)
T 4aow_A           88 FVSDVVISSDGQFALSGSWDGTLRLWDLTTG--TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG------  159 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS------
T ss_pred             CEEEEEECCCCCEEEEEcccccceEEeeccc--ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC------
Confidence            7999999999999999999999999998877  44445556777889999999996555556679999999861      


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC--ccc--------------Cc---eEEeccCCeEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF--PGL--------------GT---PIRRGFGGLSI  241 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~--l~~--------------~~---~~~~~~~~v~~  241 (427)
                                        ..........+ ...+..++|++++..  +++              +.   .+..|...|.+
T Consensus       160 ------------------~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~  220 (340)
T 4aow_A          160 ------------------VCKYTVQDESH-SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNT  220 (340)
T ss_dssp             ------------------CEEEEECSSSC-SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ------------------CceEEEEeccc-cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEE
Confidence                              01112223333 667788888876543  111              11   13347789999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccccccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLL  319 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~  319 (427)
                      ++|+|++++|++++.|+.|++||+++.+......+...+.+++|+|++.+++. +. ++.+++|++.....  .+..+..
T Consensus       221 ~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~-d~~i~iwd~~~~~~~~~~~~~~~  298 (340)
T 4aow_A          221 VTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA-AT-GPSIKIWDLEGKIIVDELKQEVI  298 (340)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE-EE-TTEEEEEETTTTEEEEEECCC--
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeec-cC-CCEEEEEECCCCeEEEeccccce
Confidence            99999999999999999999999998887666667788999999999877654 34 45788887765411  1111100


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                           ......+...|++++|+|||++||+   ++.|   |+|+|||+++|.
T Consensus       299 -----~~~~~~h~~~v~~l~~s~dg~~l~s---gs~D---g~v~iW~~~tGt  339 (340)
T 4aow_A          299 -----STSSKAEPPQCTSLAWSADGQTLFA---GYTD---NLVRVWQVTIGT  339 (340)
T ss_dssp             ----------CCCCCEEEEEECTTSSEEEE---EETT---SCEEEEEEEC--
T ss_pred             -----eeeccCCCCCEEEEEECCCCCEEEE---EeCC---CEEEEEeCCCcC
Confidence                 0111234558999999999999998   5666   679999998864

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.93  E-value=8.5e-25  Score=204.88  Aligned_cols=241  Identities=14%  Similarity=0.182  Sum_probs=173.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++++.|+.|++||+.............|...|.+++|+|++..+++++.++.+++|+++..     
T Consensus        54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~-----  128 (372)
T 1k8k_C           54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE-----  128 (372)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETT-----
T ss_pred             cccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCC-----
Confidence            799999999999999999999999999987632233344678899999999999954444455699999999711     


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc------------------------------
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT------------------------------  230 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------------------------  230 (427)
                                       ..+.....+...+...|.+++|+|++++++.+.                              
T Consensus       129 -----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~  191 (372)
T 1k8k_C          129 -----------------NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF  191 (372)
T ss_dssp             -----------------TTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred             -----------------CcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccch
Confidence                             111222223233378899999999988754321                              


Q ss_pred             --e---EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          231 --P---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       231 --~---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                        .   +..|...+.+++|+|++++|++++.|+.|++||+++++.. .+..|...+.+++|+|++++++++  .++.+.+
T Consensus       192 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~i  269 (372)
T 1k8k_C          192 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG--HDCFPVL  269 (372)
T ss_dssp             TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--TTSSCEE
T ss_pred             hhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE--eCCeEEE
Confidence              1   1235678999999999999999999999999999988764 444788899999999999988765  5558888


Q ss_pred             eeeCC--CC----CCcccccc---------------cccccc-------cee-eccCCceeEEEEC-CCC---CEEEEEE
Q 014302          305 IHFAS--KP----PSLDAHLL---------------PVDLPD-------IVS-LTGSQGIEKIAWD-ASG---ERLAVSY  351 (427)
Q Consensus       305 ~~~~~--~~----~~~~~~~~---------------~~~~~~-------~~~-~~~~~~i~~v~~s-p~g---~~La~~~  351 (427)
                      |++..  ..    ..+..+..               ......       ... ..+.+.|++++|. ++|   ++|++  
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s--  347 (372)
T 1k8k_C          270 FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT--  347 (372)
T ss_dssp             EEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEE--
T ss_pred             EEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEE--
Confidence            88876  21    00000000               000000       111 1456689999976 777   99998  


Q ss_pred             ecCCCcceeEEEEEEeccCc
Q 014302          352 KGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       352 ~~~~d~~~g~i~vwd~~~~~  371 (427)
                       ++.|   |+|++|++++++
T Consensus       348 -~~~D---g~i~~W~~~~~~  363 (372)
T 1k8k_C          348 -TGMD---GGMSIWDVRSLE  363 (372)
T ss_dssp             -EETT---SEEEEEEHHHHH
T ss_pred             -ecCC---CceEEEEecChh
Confidence             5666   779999997754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=2.6e-24  Score=195.77  Aligned_cols=219  Identities=16%  Similarity=0.243  Sum_probs=147.5

Q ss_pred             ceeeeEEcCC--CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC--CCceEEEecCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~--g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      .|++++|+|+  +++||+|+.|++|+|||+..+..........|...|.+++|+|+  +..+++++.++.|++|++...+
T Consensus        55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B           55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred             CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence            7999999864  88999999999999999987633344445678999999999998  6334444456999999997110


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                      .                       .....+..| ...|.+++|+|++....     .       .....+++++|++++.
T Consensus       135 ~-----------------------~~~~~~~~h-~~~v~~~~~~p~~~~~~-----~-------~~~~~~~~~~l~sgs~  178 (297)
T 2pm7_B          135 T-----------------------TSPIIIDAH-AIGVNSASWAPATIEED-----G-------EHNGTKESRKFVTGGA  178 (297)
T ss_dssp             C-----------------------BCCEEEECC-SSCEEEEEECCCC------------------------CCEEEEEET
T ss_pred             c-----------------------eeeeeeecc-cCccceEeecCCccccc-----c-------cCCCCCCcceEEEEcC
Confidence            0                       001112333 45566666666532110     0       0001234689999999


Q ss_pred             CCcEEEEEcCCCCc-----cccccCCCCeeEEEECCCC---CEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee
Q 014302          257 DGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEG---RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS  328 (427)
Q Consensus       257 dg~v~iwd~~~~~~-----~~~~~~~~~v~~v~~spdg---~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      |+.|++||+++.+.     ..+..|...|.+++|+|++   ++|+++ +.++.+++|++............       ..
T Consensus       179 D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~-s~D~~v~iWd~~~~~~~~~~~~~-------~~  250 (297)
T 2pm7_B          179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASV-SQDRTCIIWTQDNEQGPWKKTLL-------KE  250 (297)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE-ETTSCEEEEEESSTTSCCEEEES-------SS
T ss_pred             CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEE-ECCCcEEEEEeCCCCCccceeee-------ec
Confidence            99999999987652     2344799999999999995   677765 55568899988663211100000       00


Q ss_pred             eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ..+...|.+++|+|+|++||+   ++.|   ++|+||+...
T Consensus       251 ~~~~~~v~~~~~s~~g~~las---~~~D---~~v~lw~~~~  285 (297)
T 2pm7_B          251 EKFPDVLWRASWSLSGNVLAL---SGGD---NKVTLWKENL  285 (297)
T ss_dssp             SCCSSCEEEEEECSSSCCEEE---EETT---SCEEEEEECT
T ss_pred             ccCCCcEEEEEECCCCCEEEE---EcCC---CcEEEEEECC
Confidence            123457999999999999999   5555   6699999863

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.93  E-value=3.8e-24  Score=195.93  Aligned_cols=235  Identities=13%  Similarity=0.200  Sum_probs=171.8

Q ss_pred             ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCce
Q 014302          135 ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI  214 (427)
Q Consensus       135 ~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  214 (427)
                      ......+|...|++++|+|++..+++++.++.+++|++.         .+                .....+..| ...|
T Consensus        15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~---------~~----------------~~~~~~~~h-~~~v   68 (312)
T 4ery_A           15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---------DG----------------KFEKTISGH-KLGI   68 (312)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT---------TC----------------CEEEEECCC-SSCE
T ss_pred             eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCC---------Cc----------------ccchhhccC-CCce
Confidence            344556899999999999999544455567999999986         11                233345555 7789


Q ss_pred             eeeEeCCCCCCcccCc-----------------eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccC
Q 014302          215 TALSWGPDGRFPGLGT-----------------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSST  276 (427)
Q Consensus       215 ~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~  276 (427)
                      .+++|+|++++++++.                 .+..|...|.+++|+|++++|++++.|+.|++||+++++.. .+..|
T Consensus        69 ~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  148 (312)
T 4ery_A           69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH  148 (312)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence            9999999999865431                 24457788999999999999999999999999999988764 44478


Q ss_pred             CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC
Q 014302          277 SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD  356 (427)
Q Consensus       277 ~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d  356 (427)
                      ...|.+++|+|++++|++++. ++.+++|++.......           .....+...+..++|+|++++|++   ++.|
T Consensus       149 ~~~v~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~---~~~d  213 (312)
T 4ery_A          149 SDPVSAVHFNRDGSLIVSSSY-DGLCRIWDTASGQCLK-----------TLIDDDNPPVSFVKFSPNGKYILA---ATLD  213 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCEEE-----------EECCSSCCCEEEEEECTTSSEEEE---EETT
T ss_pred             CCcEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceee-----------EEeccCCCceEEEEECCCCCEEEE---EcCC
Confidence            899999999999999987755 4488888876542100           000112347899999999999998   4555


Q ss_pred             cceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          357 IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       357 ~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                         +.|++||++++..+..     +.+.......+...|.+.  .+.+|++|..||.|.+|++.
T Consensus       214 ---~~i~iwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~l~sg~~dg~i~vwd~~  267 (312)
T 4ery_A          214 ---NTLKLWDYSKGKCLKT-----YTGHKNEKYCIFANFSVT--GGKWIVSGSEDNLVYIWNLQ  267 (312)
T ss_dssp             ---TEEEEEETTTTEEEEE-----ECSSCCSSSCCCEEEECS--SSCEEEECCTTSCEEEEETT
T ss_pred             ---CeEEEEECCCCcEEEE-----EEecCCceEEEEEEEEeC--CCcEEEEECCCCEEEEEECC
Confidence               6799999998776522     222222222233444432  47789999999999999963

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.4e-25  Score=214.84  Aligned_cols=250  Identities=7%  Similarity=-0.018  Sum_probs=170.0

Q ss_pred             CceeeeEEcCCC---------CEEEEE-------------------eCCCeEEEEEccCCCCcc--eeeccCCcCCeeEE
Q 014302          100 VDLQGVSWHQHK---------HIVAFI-------------------SGSTQVIVRDYEDSGKDA--CILTSDSQRDVKVL  149 (427)
Q Consensus       100 ~~V~~l~~sp~g---------~~lat~-------------------~~d~~v~vwd~~~~~~~~--~~~~~~~~~~v~~l  149 (427)
                      ..|.+|+|+|++         ++||+|                   +.|++|+||+++......  ......|.+.|.++
T Consensus       134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v  213 (524)
T 2j04_B          134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDL  213 (524)
T ss_dssp             C--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEE
T ss_pred             CceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEE
Confidence            389999999987         677774                   467899999998762211  12234567889999


Q ss_pred             EEccCC-----CceEEEe-cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC
Q 014302          150 EWRPNG-----GRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  223 (427)
Q Consensus       150 ~~sp~~-----~~~la~g-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  223 (427)
                      +|+|++     ..+||++ .|++|+||++......                  . . .... +    .            
T Consensus       214 ~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~------------------~-~-~~~~-~----~------------  256 (524)
T 2j04_B          214 KWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATD------------------V-H-VFKM-C----E------------  256 (524)
T ss_dssp             EECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSS------------------S-S-EEEC-C----C------------
T ss_pred             EECCCCCCCCCCceEEEEecCCeEEEEEcCCCccc------------------c-c-ccee-e----c------------
Confidence            999972     2467665 5699999999711000                  0 0 0000 0    0            


Q ss_pred             CCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc--ccccCCCCeeEE--EECCCC-CEEEEEEcC
Q 014302          224 RFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGA--TWDPEG-RMILLAFAG  298 (427)
Q Consensus       224 ~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~v--~~spdg-~~l~~~~~~  298 (427)
                         .....+..|...|++++|++++ .|++|+.||+|++||+++....  .+..|...|.++  +|+|+| ++|++++ .
T Consensus       257 ---~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S-~  331 (524)
T 2j04_B          257 ---KPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA-V  331 (524)
T ss_dssp             ---SCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE-T
T ss_pred             ---CceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec-c
Confidence               0011344577889999999864 8999999999999999876542  345899999999  678888 7777764 5


Q ss_pred             CceeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          299 SLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       299 ~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                      ++++++|++.+...  .+.+|..            ...|.+++|+|+++.||+   ++.|   ++|++||++++.++.. 
T Consensus       332 D~tvklWD~~~~~~~~~~~~~~~------------~~~v~~v~fsp~~~~l~s---~~~d---~tv~lwd~~~~~~~~~-  392 (524)
T 2j04_B          332 DGYFYIFNPKDIATTKTTVSRFR------------GSNLVPVVYCPQIYSYIY---SDGA---SSLRAVPSRAAFAVHP-  392 (524)
T ss_dssp             TSEEEEECGGGHHHHCEEEEECS------------CCSCCCEEEETTTTEEEE---ECSS---SEEEEEETTCTTCCEE-
T ss_pred             CCeEEEEECCCCCcccccccccc------------cCcccceEeCCCcCeEEE---eCCC---CcEEEEECccccccee-
Confidence            55888888765311  1111211            125789999999999988   5555   6799999998775321 


Q ss_pred             eeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          377 LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                          +.+..  ..+.+++|.|+   |..|+.|..||.|.+|++
T Consensus       393 ----l~gH~--~~V~sva~Sp~---g~~l~Sgs~Dgtv~lwd~  426 (524)
T 2j04_B          393 ----LVSRE--TTITAIGVSRL---HPMVLAGSADGSLIITNA  426 (524)
T ss_dssp             ----EEECS--SCEEEEECCSS---CCBCEEEETTTEEECCBS
T ss_pred             ----eecCC--CceEEEEeCCC---CCeEEEEECCCEEEEEec
Confidence                22222  23678999986   778999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=9.6e-25  Score=203.23  Aligned_cols=243  Identities=11%  Similarity=0.159  Sum_probs=169.2

Q ss_pred             ceeeeEEcCC---CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEE------ccCCCceEEEecCCeEEEEe
Q 014302          101 DLQGVSWHQH---KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW------RPNGGRSLSVGCKGGICIWA  171 (427)
Q Consensus       101 ~V~~l~~sp~---g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~------sp~~~~~la~g~~~~i~iw~  171 (427)
                      .|++++|+|+   +++|++++.|+.|++||+..... ......+|...|.+++|      +|++..+++++.++.|++|+
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-cEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            7999999999   69999999999999999987731 44555689999999955      67885555555669999999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeE----eCCCCCCcccCc----------------e
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS----WGPDGRFPGLGT----------------P  231 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~spdg~~l~~~~----------------~  231 (427)
                      +.....                     ..........+....+.+++    |+|+++++..+.                .
T Consensus       146 ~~~~~~---------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  204 (357)
T 3i2n_A          146 PRQKDD---------------------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW  204 (357)
T ss_dssp             TTSCSS---------------------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCCCC---------------------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee
Confidence            972110                     11112212222344677777    788888765331                1


Q ss_pred             EEeccCCeEEEEEcc---CCCEEEEEecCCcEEEEEcCCCCccc-cc-----cCCCCeeEEEECCCCC-EEEEEEcCCce
Q 014302          232 IRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTSEP-WS-----STSGFVTGATWDPEGR-MILLAFAGSLT  301 (427)
Q Consensus       232 ~~~~~~~v~~~~~sp---~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-----~~~~~v~~v~~spdg~-~l~~~~~~~~~  301 (427)
                      ...|...+.+++|+|   ++.+|++++.||.|++||+++.+... +.     .|...|.+++|+|+++ ++++ ++.++.
T Consensus       205 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg~  283 (357)
T 3i2n_A          205 ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLT-AGGAGG  283 (357)
T ss_dssp             EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEE-EETTSE
T ss_pred             ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEE-EeCCCc
Confidence            234678999999999   99999999999999999998876532 22     7899999999999999 5555 456669


Q ss_pred             eeeeeeCCCCCCc----ccccccc--ccccce-eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          302 LGSIHFASKPPSL----DAHLLPV--DLPDIV-SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       302 i~~~~~~~~~~~~----~~~~~~~--~~~~~~-~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      +++|++.......    .+.....  ...... ...+.+.|.+++|+|+|++|+++  ++.|   +.|+|||+.+..
T Consensus       284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s--~~~d---~~i~iw~~~~~~  355 (357)
T 3i2n_A          284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVC--SSFD---QTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEE--EETT---SEEEEEEECC--
T ss_pred             EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEE--ecCC---CcEEEEECCCcc
Confidence            9999887642210    0100000  001111 22355689999999999999843  5556   779999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=4.4e-25  Score=206.13  Aligned_cols=222  Identities=12%  Similarity=0.174  Sum_probs=167.3

Q ss_pred             CceeeeEEcCC----CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc-CCCceEEEe-cCCeEEEEecc
Q 014302          100 VDLQGVSWHQH----KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVG-CKGGICIWAPS  173 (427)
Q Consensus       100 ~~V~~l~~sp~----g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~la~g-~~~~i~iw~~~  173 (427)
                      ..|++++|+|+    +++|++|+.|+.|+|||+...  ........|...|.+++|+| ++ .+|+++ .++.|++|++.
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~  146 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM--QCIKHYVGHGNAINELKFHPRDP-NLLLSVSKDHALRLWNIQ  146 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC--CEEEEEESCCSCEEEEEECSSCT-TEEEEEETTSCEEEEETT
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc--eEeeeecCCCCcEEEEEECCCCC-CEEEEEeCCCeEEEEEee
Confidence            37999999999    679999999999999999876  45555667999999999999 66 555555 56999999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehh---cccCCCceeeeEeCCCCCCcccCce-----------------EE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFL---RSQNGEQITALSWGPDGRFPGLGTP-----------------IR  233 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~spdg~~l~~~~~-----------------~~  233 (427)
                               .+                .....+   ..+ ...|.+++|+|+++++.++..                 +.
T Consensus       147 ---------~~----------------~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  200 (366)
T 3k26_A          147 ---------TD----------------TLVAIFGGVEGH-RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK  200 (366)
T ss_dssp             ---------TT----------------EEEEEECSTTSC-SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHH
T ss_pred             ---------cC----------------eEEEEecccccc-cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccc
Confidence                     11                223323   344 788999999999987553311                 01


Q ss_pred             ----------------------------eccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc---------------
Q 014302          234 ----------------------------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---------------  270 (427)
Q Consensus       234 ----------------------------~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---------------  270 (427)
                                                  .|...|.+++|+  +++|++++.|+.|++||+++...               
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  278 (366)
T 3k26_A          201 ESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL  278 (366)
T ss_dssp             HHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred             eeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence                                        177889999998  77999999999999999987654               


Q ss_pred             cccccCCCCeeEEEECCC--CCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeec-c--CCceeEEEECCCCC
Q 014302          271 EPWSSTSGFVTGATWDPE--GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-G--SQGIEKIAWDASGE  345 (427)
Q Consensus       271 ~~~~~~~~~v~~v~~spd--g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~i~~v~~sp~g~  345 (427)
                      ..+..|...|.+++|+|+  +++|++++ .++.+++|++........         ....+. +  ...|.+++|+|+++
T Consensus       279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~  348 (366)
T 3k26_A          279 GRFDYSQCDIWYMRFSMDFWQKMLALGN-QVGKLYVWDLEVEDPHKA---------KCTTLTHHKCGAAIRQTSFSRDSS  348 (366)
T ss_dssp             EEEECSSCCSSCCCCEECTTSSEEEEEC-TTSCEEEEECCSSSGGGC---------EEEEECCTTCCSCEEEEEECTTSS
T ss_pred             ccccccCCcEEEEEEcCCCCCcEEEEEe-cCCcEEEEECCCCCCccc---------cceEEcccccCCceEEEEeCCCCC
Confidence            112267788999999999  99999774 555888888876421000         001111 1  45899999999999


Q ss_pred             EEEEEEecCCCcceeEEEEEEec
Q 014302          346 RLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       346 ~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      +|++   ++.|   |.|++||+.
T Consensus       349 ~l~s---~~~d---g~i~iwd~~  365 (366)
T 3k26_A          349 ILIA---VCDD---ASIWRWDRL  365 (366)
T ss_dssp             EEEE---EETT---SEEEEEEC-
T ss_pred             eEEE---EeCC---CEEEEEEec
Confidence            9999   5566   779999985

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=2.8e-24  Score=200.68  Aligned_cols=279  Identities=13%  Similarity=0.138  Sum_probs=156.6

Q ss_pred             CCCCC--ceeeeEEcCC---CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEE
Q 014302           96 LLPEV--DLQGVSWHQH---KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIW  170 (427)
Q Consensus        96 ~l~~~--~V~~l~~sp~---g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw  170 (427)
                      .+.+|  .|++++|+|+   |++|++|+.|+.|+||++.............|...|++++|+|++..+++++.++.|++|
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw  113 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW  113 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence            33444  8999999999   599999999999999999874333335566799999999999999555555567999999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEe--CCCCCCcccCc--------------eEEe
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSW--GPDGRFPGLGT--------------PIRR  234 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--spdg~~l~~~~--------------~~~~  234 (427)
                      ++.         .+                .... +..+ ...|.+++|  +|+++++.++.              .+..
T Consensus       114 d~~---------~~----------------~~~~-~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A          114 DLS---------SN----------------QAIQ-IAQH-DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             ETT---------TT----------------EEEE-EEEC-SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             EcC---------CC----------------Ccee-eccc-cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence            997         11                1111 1112 334444444  44443322111              0000


Q ss_pred             ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc---ccCCCCeeEEEECCCCCE----EEEEEcCCceeeeeee
Q 014302          235 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW---SSTSGFVTGATWDPEGRM----ILLAFAGSLTLGSIHF  307 (427)
Q Consensus       235 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~v~~spdg~~----l~~~~~~~~~i~~~~~  307 (427)
                      ....-..+++.+.+..+++++.++.+++||++.......   ..+...+..+++.++...    ++++ +.++.+.+|++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dg~i~i~~~  245 (368)
T 3mmy_A          167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG-SIEGRVAIHYI  245 (368)
T ss_dssp             EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE-ETTSEEEEEES
T ss_pred             EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe-cCCCcEEEEec
Confidence            111112222333334444444444444444433322100   012223333333333322    4444 34446666666


Q ss_pred             CCCCC-----CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeee
Q 014302          308 ASKPP-----SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR  382 (427)
Q Consensus       308 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~  382 (427)
                      .....     .+.+|....  .......+...|.+++|+|++++|++   ++.|   |.|++||++++.++...     .
T Consensus       246 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~s---~~~d---g~i~iwd~~~~~~~~~~-----~  312 (368)
T 3mmy_A          246 NPPNPAKDNFTFKCHRSNG--TNTSAPQDIYAVNGIAFHPVHGTLAT---VGSD---GRFSFWDKDARTKLKTS-----E  312 (368)
T ss_dssp             SCSCHHHHSEEEECSEEC------CCCEEECCEEEEEECTTTCCEEE---EETT---SCEEEEETTTTEEEEEC-----C
T ss_pred             CCCCccccceeeeeeeccc--ccccccccccceEEEEEecCCCEEEE---EccC---CeEEEEECCCCcEEEEe-----c
Confidence            54311     111111100  00000111226999999999999999   5555   66999999988765321     2


Q ss_pred             CCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          383 GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       383 ~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      +.  .....+++|.|+   |..|++|..+|....+.++
T Consensus       313 ~~--~~~v~~~~~s~~---g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          313 QL--DQPISACCFNHN---GNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             CC--SSCEEEEEECTT---SSCEEEEECCCSTTCGGGC
T ss_pred             CC--CCCceEEEECCC---CCeEEEEeccccccccccc
Confidence            22  223668999986   7789999898876666644

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.93  E-value=1.3e-24  Score=207.67  Aligned_cols=221  Identities=16%  Similarity=0.288  Sum_probs=170.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .|++|+|+|+|++||+|+.|++|+|||+...  .......+|...+.+++|+  + .+|++| .++.+++|+....    
T Consensus       149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~--~~~~~~~~h~~~v~~~s~~--~-~~l~sgs~d~~i~~~d~~~~----  219 (420)
T 4gga_A          149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGSLSWN--S-YILSSGSRSGHIHHHDVRVA----  219 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSS----
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEcCCC--cEEEEEeCCCCceEEEeeC--C-CEEEEEeCCCceeEeeeccc----
Confidence            6999999999999999999999999999887  5666677899999998886  4 456555 5599999998611    


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc---------------------eEEeccCC
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT---------------------PIRRGFGG  238 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~---------------------~~~~~~~~  238 (427)
                                          ...+..+..| ...+..+.|+|+|++++.+.                     ....|...
T Consensus       220 --------------------~~~~~~~~~h-~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~  278 (420)
T 4gga_A          220 --------------------EHHVATLSGH-SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA  278 (420)
T ss_dssp             --------------------SCEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC
T ss_pred             --------------------ceeeEEeccc-ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCc
Confidence                                1223345555 77888999999988754321                     12346688


Q ss_pred             eEEEEEccCCCEEE-E--EecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEc-CCceeeeeeeCCCCC--
Q 014302          239 LSILKWSPTGDYFF-A--AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPP--  312 (427)
Q Consensus       239 v~~~~~sp~g~~l~-~--~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~-~~~~i~~~~~~~~~~--  312 (427)
                      |.+++|+|++..++ +  |+.|++|++||+.+++......+...+.++.|+|+++.+++++. .++.|++|++.+...  
T Consensus       279 V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~  358 (420)
T 4gga_A          279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA  358 (420)
T ss_dssp             EEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred             eeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE
Confidence            99999999876544 3  45799999999999988666667778999999999999988754 567888888876421  


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      .+.+              |.+.|.+|+|+|||++||+   ++.|   ++|+|||+....
T Consensus       359 ~l~g--------------H~~~V~~l~~spdg~~l~S---~s~D---~tvriWdv~~~~  397 (420)
T 4gga_A          359 ELKG--------------HTSRVLSLTMSPDGATVAS---AAAD---ETLRLWRCFELD  397 (420)
T ss_dssp             EECC--------------CSSCEEEEEECTTSSCEEE---EETT---TEEEEECCSCSS
T ss_pred             EEcC--------------CCCCEEEEEEcCCCCEEEE---EecC---CeEEEEECCCCC
Confidence            2222              3458999999999999999   5666   779999996543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=1.1e-24  Score=235.64  Aligned_cols=269  Identities=12%  Similarity=0.167  Sum_probs=201.3

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      ..|.+++|+|+++++++|+.||.|++|++...  .......+|...|++++|+|++..+++++.++.|++|++.      
T Consensus       962 ~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~------ 1033 (1249)
T 3sfz_A          962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN--RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ------ 1033 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCCEEEETTTT--SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETT------
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC--ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC------
Confidence            37999999999999999999999999999877  4555667899999999999999655555667999999997      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc-------------C---ceEEeccCCeEEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL-------------G---TPIRRGFGGLSILK  243 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-------------~---~~~~~~~~~v~~~~  243 (427)
                         ++                ... .+..+ ...+.+++|+|++.++..             +   ..+..|...|.+++
T Consensus      1034 ---~~----------------~~~-~~~~~-~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~ 1092 (1249)
T 3sfz_A         1034 ---TG----------------DYV-FLQAH-QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCA 1092 (1249)
T ss_dssp             ---TT----------------EEE-CCBCC-SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEE
T ss_pred             ---CC----------------ceE-EEecC-CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEE
Confidence               11                112 12333 678889999998766321             1   12455788999999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  322 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  322 (427)
                      |+|++++|++++.|+.|++||+.+++.. .+..|...|.+++|+|+|++|++++. ++.+++|++.+......  ..+..
T Consensus      1093 ~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~-dg~i~vwd~~~~~~~~~--~~~~~ 1169 (1249)
T 3sfz_A         1093 ISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD-NGEIRIWNVSDGQLLHS--CAPIS 1169 (1249)
T ss_dssp             ECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEET-TSCCCEEESSSSCCCCC--CCCCC
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeC-CCEEEEEECCCCceEEE--ecccc
Confidence            9999999999999999999999988774 44589999999999999999998754 45888998876422110  00000


Q ss_pred             cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCC
Q 014302          323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG  402 (427)
Q Consensus       323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g  402 (427)
                      .. .....+.+.|++++|+|||++|+++  +      |.|++||+.++..+..     +.+..  ....+++|.|+   |
T Consensus      1170 ~~-~~~~~~~~~v~~l~fs~dg~~l~s~--~------g~v~vwd~~~g~~~~~-----~~~~~--~~i~~~~~s~d---g 1230 (1249)
T 3sfz_A         1170 VE-EGTATHGGWVTDVCFSPDSKTLVSA--G------GYLKWWNVATGDSSQT-----FYTNG--TNLKKIHVSPD---F 1230 (1249)
T ss_dssp             --------CCSCCCEEEECTTSSCEEEE--S------SSEEEBCSSSCBCCCC-----CCCSS--CCCCCCEECSS---S
T ss_pred             cc-ccccccCceEEEEEECCCCCEEEEC--C------CeEEEEECCCCceeee-----eeccC--CcccEEEECCC---C
Confidence            00 0112345589999999999999884  3      3499999998876421     11222  22457888886   6


Q ss_pred             ceeEEEeeCceEEEEec
Q 014302          403 PLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       403 ~~l~v~~~~g~i~~~~~  419 (427)
                      ..|+++..+|.|.+|++
T Consensus      1231 ~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A         1231 RTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp             CCEEEECTTCCEEEECC
T ss_pred             CEEEEecCCcEEEEEee
Confidence            78899999999999986

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.93  E-value=5.4e-25  Score=206.98  Aligned_cols=184  Identities=14%  Similarity=0.191  Sum_probs=136.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC-CcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      .|++++|+|++++|++++.|++|+|||+.... .........|...|.+++|+|++..+++++.++.|++|+++.     
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----  131 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQ-----  131 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-------
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECC-----
Confidence            79999999999999999999999999998873 234555667999999999999996566666679999999971     


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------EE--------------------
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------IR--------------------  233 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------~~--------------------  233 (427)
                          +             ..+.....+...+...|.+++|+|++++++.+..      +.                    
T Consensus       132 ----~-------------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  194 (377)
T 3dwl_C          132 ----E-------------NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP  194 (377)
T ss_dssp             --------------------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCC
T ss_pred             ----c-------------ccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccc
Confidence                1             0112234455523889999999999987553311      00                    


Q ss_pred             --------eccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-----cccccCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          234 --------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       234 --------~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                              .|...|.+++|+|++++|++++.|+.|++||+++++.     ..+..|...|.+++|+|+|++|+++ .+++
T Consensus       195 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~~~  273 (377)
T 3dwl_C          195 FNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG-YNYS  273 (377)
T ss_dssp             EEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE-SSSS
T ss_pred             hhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE-cCCc
Confidence                    4667799999999999999999999999999998876     2344888999999999999998876 4443


Q ss_pred             eeeeeeeC
Q 014302          301 TLGSIHFA  308 (427)
Q Consensus       301 ~i~~~~~~  308 (427)
                      .+ +|...
T Consensus       274 ~~-~~~~~  280 (377)
T 3dwl_C          274 PI-LLQGN  280 (377)
T ss_dssp             EE-EECCC
T ss_pred             EE-EEEeC
Confidence            33 45443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=8.7e-24  Score=204.52  Aligned_cols=253  Identities=13%  Similarity=0.140  Sum_probs=182.7

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcccc
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~  181 (427)
                      +.++++  ++++|++|+.|++|++||+...  .......+|...|.+++|+|++ .+++++.++.|++|++.        
T Consensus       125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~--~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~--------  191 (464)
T 3v7d_B          125 ITCLQF--EDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK--------  191 (464)
T ss_dssp             EEEEEE--ETTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT--------
T ss_pred             EEEEEE--CCCEEEEEcCCCcEEEEECCCC--cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC--------
Confidence            566666  5679999999999999999877  5556667899999999999998 66666677999999997        


Q ss_pred             ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC--CCCCCcccCc-----------------------------
Q 014302          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG--PDGRFPGLGT-----------------------------  230 (427)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--pdg~~l~~~~-----------------------------  230 (427)
                       ++                .....+..| ...|.+++|+  +++.++.++.                             
T Consensus       192 -~~----------------~~~~~~~~h-~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  253 (464)
T 3v7d_B          192 -KG----------------CCTHVFEGH-NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF  253 (464)
T ss_dssp             -TT----------------EEEEEECCC-SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred             -CC----------------cEEEEECCC-CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence             11                334445555 7778888887  4555433221                             


Q ss_pred             -----------eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcC
Q 014302          231 -----------PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAG  298 (427)
Q Consensus       231 -----------~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~  298 (427)
                                 .+..|...+.++  ++++++|++++.|+.|++||+++.+.. .+..|...|.+++|+|+++++++++. 
T Consensus       254 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~-  330 (464)
T 3v7d_B          254 HTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM-  330 (464)
T ss_dssp             SCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET-
T ss_pred             eccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC-
Confidence                       122344455544  788999999999999999999988764 34478999999999999999998754 


Q ss_pred             CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeee
Q 014302          299 SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI  378 (427)
Q Consensus       299 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~  378 (427)
                      ++.+++|++.+....            .....+...|.+++|+  +++|++   ++.|   |+|++||+.+.......  
T Consensus       331 dg~i~vwd~~~~~~~------------~~~~~h~~~v~~~~~~--~~~l~s---~s~d---g~v~vwd~~~~~~~~~~--  388 (464)
T 3v7d_B          331 DTTIRIWDLENGELM------------YTLQGHTALVGLLRLS--DKFLVS---AAAD---GSIRGWDANDYSRKFSY--  388 (464)
T ss_dssp             TSCEEEEETTTTEEE------------EEECCCSSCEEEEEEC--SSEEEE---EETT---SEEEEEETTTCCEEEEE--
T ss_pred             CCcEEEEECCCCcEE------------EEEeCCCCcEEEEEEc--CCEEEE---EeCC---CcEEEEECCCCceeeee--
Confidence            458888887654210            0111234588999998  578888   5556   77999999886643221  


Q ss_pred             eeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          379 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       379 ~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                          .....  ...++|.++   +.+|++|. +|.|.+|++-
T Consensus       389 ----~~~~~--~~~~~~~~~---~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          389 ----HHTNL--SAITTFYVS---DNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             ----ECTTC--CCEEEEEEC---SSEEEEEE-TTEEEEEETT
T ss_pred             ----cCCCC--ccEEEEEeC---CCEEEEec-CCeEEEEECC
Confidence                11112  335677775   66888885 9999999963

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=9e-24  Score=200.62  Aligned_cols=250  Identities=14%  Similarity=0.197  Sum_probs=177.1

Q ss_pred             ceeeeEEcCCCCE-EEEEeCCCeEEEEEccCCCC--cceeeccCCcCCeeEEEEcc-CCCceEEEe-cCCeEEEEeccCC
Q 014302          101 DLQGVSWHQHKHI-VAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRP-NGGRSLSVG-CKGGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~~-lat~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~v~~l~~sp-~~~~~la~g-~~~~i~iw~~~~~  175 (427)
                      ....++++|+... +++++.||.|+||++...+.  .......+|...|++++|+| ++ .+|+++ .++.|++|++...
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~  114 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDG  114 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTT
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCC
Confidence            4567889998874 44678899999999976522  23334567999999999999 66 566666 4699999999711


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC-CEEEEE
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG-DYFFAA  254 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g-~~l~~~  254 (427)
                      +.                         ....    .               ..-..+..|...|.+++|+|++ ++|+++
T Consensus       115 ~~-------------------------~~~~----~---------------~~~~~~~~h~~~v~~~~~~p~~~~~l~s~  150 (402)
T 2aq5_A          115 GL-------------------------VLPL----R---------------EPVITLEGHTKRVGIVAWHPTAQNVLLSA  150 (402)
T ss_dssp             CC-------------------------SSCB----C---------------SCSEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred             CC-------------------------cccc----C---------------CceEEecCCCCeEEEEEECcCCCCEEEEE
Confidence            00                         0000    0               0112355678899999999998 689999


Q ss_pred             ecCCcEEEEEcCCCCcc-cc--ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee-ec
Q 014302          255 KFDGTFYLWETNTWTSE-PW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS-LT  330 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~~-~~--~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  330 (427)
                      +.|+.|++||+++++.. .+  ..|...|.+++|+|+|++|++++. ++.+++|++......            ... ..
T Consensus       151 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~------------~~~~~~  217 (402)
T 2aq5_A          151 GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR-DKRVRVIEPRKGTVV------------AEKDRP  217 (402)
T ss_dssp             ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET-TSEEEEEETTTTEEE------------EEEECS
T ss_pred             cCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec-CCcEEEEeCCCCcee------------eeeccC
Confidence            99999999999988764 33  468999999999999999998754 458888887664210            000 11


Q ss_pred             cCC-ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce-EEEeeeeeeeCCCCCCCceeEEeccCCCCCceeE-E
Q 014302          331 GSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS-V  407 (427)
Q Consensus       331 ~~~-~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~-v  407 (427)
                      +.+ .+..++|+|++++|++++..+.|   +.|++||+++... +...     . ........+++|.|+   +..|+ +
T Consensus       218 ~~~~~~~~~~~~~~~~~l~~g~~~~~d---~~i~iwd~~~~~~~~~~~-----~-~~~~~~v~~~~~s~~---~~~l~~~  285 (402)
T 2aq5_A          218 HEGTRPVHAVFVSEGKILTTGFSRMSE---RQVALWDTKHLEEPLSLQ-----E-LDTSSGVLLPFFDPD---TNIVYLC  285 (402)
T ss_dssp             SCSSSCCEEEECSTTEEEEEEECTTCC---EEEEEEETTBCSSCSEEE-----E-CCCCSSCEEEEEETT---TTEEEEE
T ss_pred             CCCCcceEEEEcCCCcEEEEeccCCCC---ceEEEEcCccccCCceEE-----e-ccCCCceeEEEEcCC---CCEEEEE
Confidence            222 47999999999999985443666   7899999987653 2111     1 112223678899986   55565 5


Q ss_pred             EeeCceEEEEecc
Q 014302          408 CWSSGFCCTYPLI  420 (427)
Q Consensus       408 ~~~~g~i~~~~~~  420 (427)
                      |..||.|.+|++-
T Consensus       286 g~~dg~i~i~d~~  298 (402)
T 2aq5_A          286 GKGDSSIRYFEIT  298 (402)
T ss_dssp             ETTCSCEEEEEEC
T ss_pred             EcCCCeEEEEEec
Confidence            5579999999975

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.9e-24  Score=223.41  Aligned_cols=305  Identities=9%  Similarity=0.049  Sum_probs=189.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee--c-----c-----------CCcCCeeEEEEcc----CCCce
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL--T-----S-----------DSQRDVKVLEWRP----NGGRS  158 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~--~-----~-----------~~~~~v~~l~~sp----~~~~~  158 (427)
                      .|++++|+|+|++||+++.|++|+|||+..+  +....  .     +           .|...|++++|++    ++..+
T Consensus       213 ~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g--~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~l  290 (902)
T 2oaj_A          213 KVIQSLYHPNSLHIITIHEDNSLVFWDANSG--HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSL  290 (902)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTC--CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEE
T ss_pred             CeEEEEEcCCCCEEEEEECCCeEEEEECCCC--cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEE
Confidence            6999999999999999999999999999876  22221  1     1           1345799999964    44467


Q ss_pred             EEEecC------CeEEEEeccCCC------------------Cccccc--cC-cccc-------------------cccc
Q 014302          159 LSVGCK------GGICIWAPSYPG------------------NAASVR--SG-AASF-------------------LGAL  192 (427)
Q Consensus       159 la~g~~------~~i~iw~~~~~~------------------~~~~~~--~~-~~~~-------------------~~~~  192 (427)
                      |++|++      ..+.+|++....                  ......  .+ ....                   +...
T Consensus       291 l~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~  370 (902)
T 2oaj_A          291 LISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLI  370 (902)
T ss_dssp             EEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEE
T ss_pred             EEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEE
Confidence            777743      268888853110                  000000  00 0000                   0000


Q ss_pred             cCCCCcceeEee---------------hhcccCCCceeeeEeCCCCCC---------cccCceEEeccCCeEEEEEccCC
Q 014302          193 SRGPGTRWTLVD---------------FLRSQNGEQITALSWGPDGRF---------PGLGTPIRRGFGGLSILKWSPTG  248 (427)
Q Consensus       193 ~~~~~~~~~~~~---------------~~~~~~~~~v~~~~~spdg~~---------l~~~~~~~~~~~~v~~~~~sp~g  248 (427)
                      ..  .+.+....               .+..+ ...|+++++++....         ......+.+|...+..++|+|++
T Consensus       371 s~--dg~l~~~~~~~g~~~~~~~~~~~~l~~~-~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg  447 (902)
T 2oaj_A          371 LG--NGEIETMLYPSGIFTDKASLFPQNLSWL-RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG  447 (902)
T ss_dssp             ET--TSCEEEEETTTCCEECCGGGSCGGGTTB-TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred             cC--CCcEEEEECCCCCcccccccCCCccccc-CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence            00  11111111               11122 345666666432110         00011345566677788999999


Q ss_pred             CEEEEEecCCcEEEEEcCCCCccc---c---------ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC---
Q 014302          249 DYFFAAKFDGTFYLWETNTWTSEP---W---------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS---  313 (427)
Q Consensus       249 ~~l~~~~~dg~v~iwd~~~~~~~~---~---------~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~---  313 (427)
                      ++|++|+.|++|++||+.++....   +         ..|...|.+++|+|||++||+++. ++++++|++......   
T Consensus       448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~-DgtV~lwd~~~~~~~~~~  526 (902)
T 2oaj_A          448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE-TGDVVLFKYEVNQFYSVE  526 (902)
T ss_dssp             EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET-TSCEEEEEEEECCC----
T ss_pred             cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec-CcEEEEEEecCccccCcc
Confidence            999999999999999998875321   1         167889999999999999998754 558999988654210   


Q ss_pred             ---------ccc-----------ccc---------ccccccceee-ccCCceeEEEECCCCCEEEEEEecCCCcceeEEE
Q 014302          314 ---------LDA-----------HLL---------PVDLPDIVSL-TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIA  363 (427)
Q Consensus       314 ---------~~~-----------~~~---------~~~~~~~~~~-~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~  363 (427)
                               ++.           +..         ...+.....+ .+.+.|++|+||||| +||+   ++.|   ++|+
T Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAs---gs~D---~tv~  599 (902)
T 2oaj_A          527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGI---AYAA---GSLM  599 (902)
T ss_dssp             -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEE---EETT---SEEE
T ss_pred             ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEE---EeCC---CcEE
Confidence                     000           000         0000001122 266799999999999 9999   6666   7799


Q ss_pred             EEEeccCceEEEeeeeeeeCCCCCCCceeEEec-----cCCCCCceeEEEeeCceEEEEec
Q 014302          364 IYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH-----DKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       364 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-----~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      |||+++..++....+..+. .+....+.+++|.     |+-..+.+|++|..||.|.+|++
T Consensus       600 lwd~~~~~~~~~~~~~~~~-~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          600 LIDRRGPAIIYMENIREIS-GAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             EEETTTTEEEEEEEGGGTC-SSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             EEECCCCeEEEEeehhHhc-cccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            9999877664321211111 0223346789998     76334689999999999999997

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.93  E-value=1e-23  Score=218.17  Aligned_cols=269  Identities=16%  Similarity=0.188  Sum_probs=192.7

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      ..|++++|+|++++||+++.|+.|+|||+.++  ........|...|++++|+|++..+++++.++.|++|++.      
T Consensus        56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~------  127 (814)
T 3mkq_A           56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG--EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE------  127 (814)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG------
T ss_pred             CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC------
Confidence            37999999999999999999999999999877  4555567799999999999999555555566999999997      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccCc-----------------eEEe-ccCCeE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLGT-----------------PIRR-GFGGLS  240 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-----------------~~~~-~~~~v~  240 (427)
                         .               .......+..+ ...|.+++|+| +++.+..+.                 .+.. +...+.
T Consensus       128 ---~---------------~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~  188 (814)
T 3mkq_A          128 ---N---------------NWALEQTFEGH-EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN  188 (814)
T ss_dssp             ---G---------------TSEEEEEEECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCC
T ss_pred             ---C---------------CceEEEEEcCC-CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEE
Confidence               1               11233444555 78899999999 776654321                 1122 337899


Q ss_pred             EEEEcc--CCCEEEEEecCCcEEEEEcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccc
Q 014302          241 ILKWSP--TGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  317 (427)
Q Consensus       241 ~~~~sp--~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~  317 (427)
                      +++|+|  ++.+|++++.||.|++||+++++... +..|...|.+++|+|+++++++++. ++.+++|++......    
T Consensus       189 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~v~vwd~~~~~~~----  263 (814)
T 3mkq_A          189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE-DGTLKIWNSSTYKVE----  263 (814)
T ss_dssp             EEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET-TSCEEEEETTTCSEE----
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEE----
Confidence            999999  99999999999999999998877643 4478899999999999999988754 448888877653210    


Q ss_pred             ccccccccceeeccCCceeEEEECCCCC--EEEEEEecCCCcceeEEEEEEeccCce-EEEeeeeeeeC-----------
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGE--RLAVSYKGGDDIYKGLIAIYDARRTPL-ISLSLIGFIRG-----------  383 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~--~La~~~~~~~d~~~g~i~vwd~~~~~~-~~~~~~~~~~~-----------  383 (427)
                              .....+...+.+++|+|+|+  ++++   +.+    +.+.+|++..... +.+.|.|..-.           
T Consensus       264 --------~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  328 (814)
T 3mkq_A          264 --------KTLNVGLERSWCIATHPTGRKNYIAS---GFD----NGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDI  328 (814)
T ss_dssp             --------EEECCSSSSEEEEEECTTCGGGEEEE---EET----TEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCE
T ss_pred             --------EEeecCCCcEEEEEEccCCCceEEEE---EeC----CCEEEEEcCCCCceeEECCCCCEEEECcccccceee
Confidence                    00111334899999999998  4555   332    2388888765322 32322221100           


Q ss_pred             ------------------------CCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          384 ------------------------PGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       384 ------------------------~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                                              ......+.+++|.|+   |..|+++. +|.+.+|++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd---g~~la~~~-~~~~~i~~~  384 (814)
T 3mkq_A          329 FTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPN---GRFVTVVG-DGEYVIYTA  384 (814)
T ss_dssp             EEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTT---SSEEEEEE-TTEEEEEET
T ss_pred             eeeecccccccccCccceeeeecCCCCccCCceeEECCC---CCEEEEec-CCEEEEEEC
Confidence                                    011113567888885   77888885 899998884

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=1.5e-24  Score=205.19  Aligned_cols=248  Identities=17%  Similarity=0.141  Sum_probs=167.8

Q ss_pred             ceeeeEEcCC----C---CEEEEEeCCCeEEEEEccCCCCc---ceeeccCC-----cCCeeEEEEc----cCCCc-eEE
Q 014302          101 DLQGVSWHQH----K---HIVAFISGSTQVIVRDYEDSGKD---ACILTSDS-----QRDVKVLEWR----PNGGR-SLS  160 (427)
Q Consensus       101 ~V~~l~~sp~----g---~~lat~~~d~~v~vwd~~~~~~~---~~~~~~~~-----~~~v~~l~~s----p~~~~-~la  160 (427)
                      .|++++|+|+    +   ++|++++.|+.|++|++......   .......|     ...|.+++|+    |++.. +++
T Consensus        64 ~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~  143 (397)
T 1sq9_A           64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA  143 (397)
T ss_dssp             CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEE
T ss_pred             cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEE
Confidence            7999999999    9   99999999999999999877210   04445566     5899999999    99965 455


Q ss_pred             EecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhc------ccCCCceeeeEeCCCCCCcccCc----
Q 014302          161 VGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLR------SQNGEQITALSWGPDGRFPGLGT----  230 (427)
Q Consensus       161 ~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~spdg~~l~~~~----  230 (427)
                      ++.++.|++|++........   +.           ...+.....+.      ..+...+.+++|+|++ ++..+.    
T Consensus       144 ~~~dg~i~iwd~~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~  208 (397)
T 1sq9_A          144 TDVKGTTYIWKFHPFADESN---SL-----------TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT  208 (397)
T ss_dssp             EETTSCEEEEEEESSSSHHH---HT-----------TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE
T ss_pred             EeCCCcEEEEeCCccccccc---cc-----------eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc
Confidence            55669999999972000000   00           00000000121      2237789999999999 754321    


Q ss_pred             -------------eEEe---c---cCCeEEEEEccCCCEEEEEecC---CcEEEEEcCCCCccc-ccc------------
Q 014302          231 -------------PIRR---G---FGGLSILKWSPTGDYFFAAKFD---GTFYLWETNTWTSEP-WSS------------  275 (427)
Q Consensus       231 -------------~~~~---~---~~~v~~~~~sp~g~~l~~~~~d---g~v~iwd~~~~~~~~-~~~------------  275 (427)
                                   .+..   |   ...+.+++|+|++++|++++.|   +.|++||+++.+... +..            
T Consensus       209 i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          209 VQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             EEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred             EEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccc
Confidence                         1344   6   7889999999999999999999   999999999887633 335            


Q ss_pred             -CCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccc------cccccc-ccccceeeccCCceeEEEECCCC-
Q 014302          276 -TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLD------AHLLPV-DLPDIVSLTGSQGIEKIAWDASG-  344 (427)
Q Consensus       276 -~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~------~~~~~~-~~~~~~~~~~~~~i~~v~~sp~g-  344 (427)
                       |...|.+++|+|++++|++++ .++.+++|++.....  .+.      +|.... .......-.+...|.+++|+|+| 
T Consensus       289 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          289 AHSSWVMSLSFNDSGETLCSAG-WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             ccCCcEEEEEECCCCCEEEEEe-CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence             899999999999999999875 455888888866421  111      110000 00000000015689999999999 


Q ss_pred             ---------CEEEEEEecCCCcceeEEEEEEeccC
Q 014302          345 ---------ERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       345 ---------~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                               ++|++   ++.|   |.|++|+++++
T Consensus       368 ~~~~~~~~~~~l~s---~~~d---g~i~iw~~~~g  396 (397)
T 1sq9_A          368 RSGMGADLNESLCC---VCLD---RSIRWFREAGG  396 (397)
T ss_dssp             SBSTTCTTSCEEEE---EETT---TEEEEEEEEC-
T ss_pred             cccccccccceEEE---ecCC---CcEEEEEcCCC
Confidence                     78888   5556   67999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=9.2e-24  Score=219.71  Aligned_cols=255  Identities=10%  Similarity=0.112  Sum_probs=172.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++||+|+.|++|+||+....   .......|...|.+++|+| +..+++++.++.|++||+.       
T Consensus        19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~---~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~-------   87 (902)
T 2oaj_A           19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQV---EVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY-------   87 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEECSTTC---EEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT-------
T ss_pred             CcEEEEECCCCCEEEEEeCCCEEEEEeCCCc---EEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC-------
Confidence            7999999999999999999999999997655   3333456788999999999 7435555567999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                        ++                .++.                          .+. +...|++++|+|++++|++|+.||.|
T Consensus        88 --~~----------------~~~~--------------------------~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V  122 (902)
T 2oaj_A           88 --SQ----------------KVLT--------------------------TVF-VPGKITSIDTDASLDWMLIGLQNGSM  122 (902)
T ss_dssp             --TC----------------SEEE--------------------------EEE-CSSCEEEEECCTTCSEEEEEETTSCE
T ss_pred             --CC----------------cEEE--------------------------EEc-CCCCEEEEEECCCCCEEEEEcCCCcE
Confidence              11                1111                          111 34578999999999999999999999


Q ss_pred             EEEEcCCCCcc------------ccccCCCCeeEEEECCCC-CEEEEEEcCCceeeeeeeCCCCC--Ccccccccccccc
Q 014302          261 YLWETNTWTSE------------PWSSTSGFVTGATWDPEG-RMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPD  325 (427)
Q Consensus       261 ~iwd~~~~~~~------------~~~~~~~~v~~v~~spdg-~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~  325 (427)
                      ++||+++.+..            ....|...|.+++|+|++ ..+++ +..++.+ +|++.....  .+..|..+.....
T Consensus       123 ~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~-g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~  200 (902)
T 2oaj_A          123 IVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLI-SYEYVTL-TYSLVENEIKQSFIYELPPFAPGG  200 (902)
T ss_dssp             EEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEE-ECSSCEE-EEETTTTEEEEEECCCBCTTCCCS
T ss_pred             EEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEE-EeCCCcE-EEECCCCceEEEEecccCCcCCCc
Confidence            99999887642            223688999999999975 55555 4566688 888776421  1222210000000


Q ss_pred             ----ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC-----------CCCCCc
Q 014302          326 ----IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP-----------GDNPKP  390 (427)
Q Consensus       326 ----~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~-----------~~~~~~  390 (427)
                          .....+...|.+++|+|+|++||+   ++.|   |+|++||+++++++.........+.           ......
T Consensus       201 ~~~~~~~~~h~~~V~~v~fspdg~~las---gs~D---g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V  274 (902)
T 2oaj_A          201 DFSEKTNEKRTPKVIQSLYHPNSLHIIT---IHED---NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKI  274 (902)
T ss_dssp             TTCCCTTSCBCCCEEEEEECTTSSEEEE---EETT---CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred             ccccccccccCCCeEEEEEcCCCCEEEE---EECC---CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCe
Confidence                000112357999999999999999   5666   6799999998877543111000000           011235


Q ss_pred             eeEEeccCCC--CCceeEEEeeC-----ceEEEEec
Q 014302          391 VAFSFHDKFK--QGPLLSVCWSS-----GFCCTYPL  419 (427)
Q Consensus       391 ~~~~f~~~~~--~g~~l~v~~~~-----g~i~~~~~  419 (427)
                      .+++|.+...  .+.+|++|..+     ..+.+|++
T Consensus       275 ~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          275 SKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             EEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             eEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            6788976533  23577777443     36777764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.92  E-value=5.4e-24  Score=213.00  Aligned_cols=226  Identities=12%  Similarity=0.114  Sum_probs=168.0

Q ss_pred             c-eeeeEEcC--CCCEEEEEeCCCeEEEEEccCC------CCcceeeccCCcCCeeEEEEccCCCceEEEecC----CeE
Q 014302          101 D-LQGVSWHQ--HKHIVAFISGSTQVIVRDYEDS------GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGI  167 (427)
Q Consensus       101 ~-V~~l~~sp--~g~~lat~~~d~~v~vwd~~~~------~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~----~~i  167 (427)
                      . |++++|+|  ++++||+++.|++|+|||+..+      ..........|...|.+++|+|++..+++++.+    +.|
T Consensus        65 ~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v  144 (615)
T 1pgu_A           65 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF  144 (615)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred             ceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEE
Confidence            6 99999999  9999999999999999999643      223444556688999999999999545444444    477


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC-CcccC--------------c--
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-FPGLG--------------T--  230 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~--------------~--  230 (427)
                      .+|+..                           .....+..| ...|.+++|+|+++ .+.++              .  
T Consensus       145 ~~~d~~---------------------------~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~  196 (615)
T 1pgu_A          145 ISWDSG---------------------------NSLGEVSGH-SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS  196 (615)
T ss_dssp             EETTTC---------------------------CEEEECCSC-SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE
T ss_pred             EEEECC---------------------------CcceeeecC-CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee
Confidence            788754                           234445555 78899999999997 33322              1  


Q ss_pred             -eEEeccC---CeEEEEEccC-CCEEEEEecCCcEEEEEcCCCCccccc-----cCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          231 -PIRRGFG---GLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPWS-----STSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       231 -~~~~~~~---~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                       .+..|..   .|.+++|+|+ +++|++++.|+.|++||+++++.....     .|...|.+++|+ ++++|++++.+ +
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-~  274 (615)
T 1pgu_A          197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD-A  274 (615)
T ss_dssp             EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT-S
T ss_pred             eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC-C
Confidence             1334667   8999999999 999999999999999999988874433     789999999999 99999887554 5


Q ss_pred             eeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          301 TLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       301 ~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      .+.+|++.....  .+..+.          ......+.++.|+ ++++|++   ++.+   +.|++||+.++..+
T Consensus       275 ~i~~wd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~~~~l~~---~~~~---g~i~~~d~~~~~~~  332 (615)
T 1pgu_A          275 TIRVWDVTTSKCVQKWTLDK----------QQLGNQQVGVVAT-GNGRIIS---LSLD---GTLNFYELGHDEVL  332 (615)
T ss_dssp             EEEEEETTTTEEEEEEECCT----------TCGGGCEEEEEEE-ETTEEEE---EETT---SCEEEEETTEEEEE
T ss_pred             cEEEEECCCCcEEEEEcCCC----------CcccCceeEEEeC-CCCeEEE---EECC---CCEEEEECCCCcEE
Confidence            888888765421  111110          0012367888886 8999988   4555   56999999875544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.8e-23  Score=199.37  Aligned_cols=250  Identities=10%  Similarity=0.013  Sum_probs=175.7

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-ceeec---------------------------------------
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACILT---------------------------------------  139 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-~~~~~---------------------------------------  139 (427)
                      +++++++|+|+|++|+++ .++.|++||+.++... .....                                       
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468999999999977666 5789999998876300 11111                                       


Q ss_pred             ---------------cCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEe
Q 014302          140 ---------------SDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLV  203 (427)
Q Consensus       140 ---------------~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (427)
                                     ..|...|++++|+|++..+++++ .++.|++|++....                    +   ...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~--------------------~---~~~  140 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS--------------------K---NVL  140 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS--------------------S---SCE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC--------------------C---cee
Confidence                           12444799999999996555666 45999999986100                    0   001


Q ss_pred             ehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-----ccccCCC
Q 014302          204 DFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSG  278 (427)
Q Consensus       204 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~  278 (427)
                      ..+.                        ...+...+.+++|+|++++|++++.+|.|++|++.+.+..     .+..|..
T Consensus       141 ~~~~------------------------~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~  196 (450)
T 2vdu_B          141 KLRK------------------------RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVS  196 (450)
T ss_dssp             EEEE------------------------EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSS
T ss_pred             eeee------------------------cccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccC
Confidence            1010                        0124567999999999999999999999999999887654     4458999


Q ss_pred             CeeEEEECCC---CCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCC
Q 014302          279 FVTGATWDPE---GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD  355 (427)
Q Consensus       279 ~v~~v~~spd---g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~  355 (427)
                      .|.+++|+|+   +++|++++. ++.+++|++.......           .....+.+.|.+++|+ ++++|++   ++.
T Consensus       197 ~v~~~~~sp~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~-----------~~~~~h~~~v~~~~~s-d~~~l~s---~~~  260 (450)
T 2vdu_B          197 MLTDVHLIKDSDGHQFIITSDR-DEHIKISHYPQCFIVD-----------KWLFGHKHFVSSICCG-KDYLLLS---AGG  260 (450)
T ss_dssp             CEEEEEEEECTTSCEEEEEEET-TSCEEEEEESCTTCEE-----------EECCCCSSCEEEEEEC-STTEEEE---EES
T ss_pred             ceEEEEEcCCCCCCcEEEEEcC-CCcEEEEECCCCceee-----------eeecCCCCceEEEEEC-CCCEEEE---EeC
Confidence            9999999999   888887754 5589999887642110           0011244589999999 9999998   455


Q ss_pred             CcceeEEEEEEeccCceEEEeeeee-ee---------------C--CCCCCCceeEEeccCCCCCceeEEEe-eCceEEE
Q 014302          356 DIYKGLIAIYDARRTPLISLSLIGF-IR---------------G--PGDNPKPVAFSFHDKFKQGPLLSVCW-SSGFCCT  416 (427)
Q Consensus       356 d~~~g~i~vwd~~~~~~~~~~~~~~-~~---------------~--~~~~~~~~~~~f~~~~~~g~~l~v~~-~~g~i~~  416 (427)
                      |   ++|+|||+.++.++.....+. +.               .  ........+++|.|+   +..|+++. .++.|.+
T Consensus       261 d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~~~~~~d~~i~i  334 (450)
T 2vdu_B          261 D---DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN---LPFVAFFVEATKCIII  334 (450)
T ss_dssp             S---SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS---SSEEEEEETTCSEEEE
T ss_pred             C---CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC---CCEEEEEECCCCeEEE
Confidence            6   679999999988765433210 00               0  011223567888875   66788877 8999999


Q ss_pred             Eec
Q 014302          417 YPL  419 (427)
Q Consensus       417 ~~~  419 (427)
                      |++
T Consensus       335 w~~  337 (450)
T 2vdu_B          335 LEM  337 (450)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            998

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.6e-23  Score=198.78  Aligned_cols=258  Identities=11%  Similarity=0.041  Sum_probs=175.1

Q ss_pred             ceeeeEEcCCCCEE-EEEeCCCeEEEEEcc--CCCCcceeec--cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC
Q 014302          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYE--DSGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~~l-at~~~d~~v~vwd~~--~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~  175 (427)
                      .|++++|+|++++| |+++.|++|+||++.  .+  ......  ..|...|++++|+|++..+++++.++.+.+|++.  
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~--  179 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN--  179 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT--
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecC--
Confidence            79999999999986 899999999999998  44  233322  3577889999999999544444455899999986  


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC---CCEEE
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT---GDYFF  252 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~---g~~l~  252 (427)
                             .+                ....       .               ....+..|...|.+++|+|+   +++|+
T Consensus       180 -------~~----------------~~~~-------~---------------~~~~~~~h~~~v~~~~~sp~~~~~~~l~  214 (450)
T 2vdu_B          180 -------SI----------------PEEK-------F---------------TQEPILGHVSMLTDVHLIKDSDGHQFII  214 (450)
T ss_dssp             -------SC----------------CCSS-------C---------------CCCCSEECSSCEEEEEEEECTTSCEEEE
T ss_pred             -------Cc----------------cccc-------c---------------cceeeecccCceEEEEEcCCCCCCcEEE
Confidence                   11                0000       0               00134457788999999999   99999


Q ss_pred             EEecCCcEEEEEcCCCCccc--cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccc--ccc-----
Q 014302          253 AAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHL--LPV-----  321 (427)
Q Consensus       253 ~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~--~~~-----  321 (427)
                      +++.|+.|++||+++++...  ...|...|.+++|+ ++++|++++ .++.+++|++.....  .+..+.  .+.     
T Consensus       215 s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (450)
T 2vdu_B          215 TSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG-GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQH  292 (450)
T ss_dssp             EEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE-SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTS
T ss_pred             EEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe-CCCeEEEEECCCCcEeeeecchhhhhhhhhhcc
Confidence            99999999999999887643  33799999999999 999999875 555888998876532  111110  000     


Q ss_pred             ----ccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe--ccCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302          322 ----DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRTPLISLSLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       322 ----~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~f  395 (427)
                          .+...........|.+++|+|++++|+++  +..+   +.|+||++  ..+..+  .....+.+.   ..+.+++|
T Consensus       293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~--~~~d---~~i~iw~~~~~~~~~l--~~~~~~~~~---~~v~~~~~  362 (450)
T 2vdu_B          293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF--VEAT---KCIIILEMSEKQKGDL--ALKQIITFP---YNVISLSA  362 (450)
T ss_dssp             BC----------CBCCCEEEEEECSSSSEEEEE--ETTC---SEEEEEEECSSSTTCE--EEEEEEECS---SCEEEEEE
T ss_pred             cccccccccccccceEEEEEEEEeCCCCEEEEE--ECCC---CeEEEEEeccCCCCce--eeccEeccC---CceEEEEe
Confidence                00000000123478999999999999995  3244   67999999  444221  111233332   34779999


Q ss_pred             ccCCCCCceeEEEee------CceEEEEecccc
Q 014302          396 HDKFKQGPLLSVCWS------SGFCCTYPLIFR  422 (427)
Q Consensus       396 ~~~~~~g~~l~v~~~------~g~i~~~~~~~~  422 (427)
                      .|+   +.+++++..      +..|.+|.+-..
T Consensus       363 ~~~---~~~v~~~~~~~~~~~~~~i~v~~~~~~  392 (450)
T 2vdu_B          363 HND---EFQVTLDNKESSGVQKNFAKFIEYNLN  392 (450)
T ss_dssp             ETT---EEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred             cCC---cEEEEEecccCCCCCCcceEEEEEEcC
Confidence            984   445555543      445788876544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.92  E-value=3.1e-23  Score=193.59  Aligned_cols=265  Identities=9%  Similarity=0.112  Sum_probs=175.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .|++++|+|||++||+|+.+ .++||+++..  .....  .+...+..++|.++++.+++++ .++.|++||+.      
T Consensus        21 ~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~------   89 (355)
T 3vu4_A           21 PVTDYEFNQDQSCLILSTLK-SFEIYNVHPV--AHIMS--QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDV------   89 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSS-EEEEEEETTE--EEEEE--EECSCCCEEEECTTSSEEEEECSSTTEEEEEETT------
T ss_pred             ceEEEEECCCCCEEEEEcCC-EEEEEecCCc--ceeee--eecCCeEEEEEcCCCCEEEEEECCccEEEEEECC------
Confidence            79999999999999999766 5789998765  22222  1223588889998885554444 45899999987      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEe------------ccCCeEEEEEccC
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRR------------GFGGLSILKWSPT  247 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~------------~~~~v~~~~~sp~  247 (427)
                         ++                ..+..+.  ....|.+++|+++...++....++.            .......+++++ 
T Consensus        90 ---~~----------------~~~~~~~--~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~-  147 (355)
T 3vu4_A           90 ---KK----------------QDVSRIK--VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSN-  147 (355)
T ss_dssp             ---TT----------------EEEEEEE--CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEET-
T ss_pred             ---CC----------------cEEEEEE--CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEc-
Confidence               11                2333333  2457888888876543322111111            001334456777 


Q ss_pred             CCEEEE--EecCCcEEEEEcCCCC-----------------ccccccCCCCeeEEEECCCCCEEEEEEcCCce-eeeeee
Q 014302          248 GDYFFA--AKFDGTFYLWETNTWT-----------------SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT-LGSIHF  307 (427)
Q Consensus       248 g~~l~~--~~~dg~v~iwd~~~~~-----------------~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~-i~~~~~  307 (427)
                       .++++  |+.||.|++||+++.+                 ...+..|...|.+++|+|+|++|++++.++ . +++|++
T Consensus       148 -~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~-~~v~iwd~  225 (355)
T 3vu4_A          148 -GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDG-TIIRVFKT  225 (355)
T ss_dssp             -TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC-SEEEEEET
T ss_pred             -cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCC-CEEEEEEC
Confidence             66664  6889999999999765                 334458999999999999999999876554 6 888888


Q ss_pred             CCCCCCccccccccccccceeec---cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeee-e----
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLT---GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI-G----  379 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~-~----  379 (427)
                      .+...             ...+.   +.+.|.+++|+|+|++||+   ++.|   ++|+|||++.......... +    
T Consensus       226 ~~~~~-------------~~~~~~g~h~~~v~~~~~s~~~~~l~s---~s~d---~~v~iw~~~~~~~~~~~~~~~~~~~  286 (355)
T 3vu4_A          226 EDGVL-------------VREFRRGLDRADVVDMKWSTDGSKLAV---VSDK---WTLHVFEIFNDQDNKRHALKGWINM  286 (355)
T ss_dssp             TTCCE-------------EEEEECTTCCSCEEEEEECTTSCEEEE---EETT---CEEEEEESSCCSCCCSEETTTTEEC
T ss_pred             CCCcE-------------EEEEEcCCCCCcEEEEEECCCCCEEEE---EECC---CEEEEEEccCCCCcccccccceeec
Confidence            76421             11111   4458999999999999999   5556   7799999976532111000 0    


Q ss_pred             -e---------ee-CCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecccc
Q 014302          380 -F---------IR-GPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFR  422 (427)
Q Consensus       380 -~---------~~-~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~  422 (427)
                       +         .. ..........++|.++   +..|+++..||.+.+|.+...
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d---~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          287 KYFQSEWSLCNFKLSVDKHVRGCKIAWISE---SSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCCCCSSCSEEEECCCCTTCCCCEEEESSS---SEEEEEETTTTEEEEEEEEEE
T ss_pred             cccccccceeEEEeccCCCCCceEEEEeCC---CCEEEEEeCCCeEEEEEEEcC
Confidence             0         00 0111112246788875   778999999999999987643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.92  E-value=5.9e-23  Score=196.69  Aligned_cols=263  Identities=12%  Similarity=0.065  Sum_probs=192.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCccee-----eccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI-----LTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~-----~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~  174 (427)
                      .+.+++|+|++.++++++.++.|++||+..+  ....     ...+|...|.+++|+|++ .+++++. ++.|++|+++ 
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~-  199 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSG--QTVRLSPPEKYKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLK-  199 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTC--CEEEECCCHHHHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETT-
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCC--eEeeecCcccccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECC-
Confidence            4678999997778888888999999999876  2222     234688899999999998 5666664 5999999987 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-cC--------------ceEEe--ccC
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-LG--------------TPIRR--GFG  237 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~--------------~~~~~--~~~  237 (427)
                              ++                .....+..+ ...+.+++|+|+++.+. .+              ..+..  ...
T Consensus       200 --------~~----------------~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~  254 (433)
T 3bws_A          200 --------TL----------------AYKATVDLT-GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG  254 (433)
T ss_dssp             --------TC----------------CEEEEEECS-SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS
T ss_pred             --------Cc----------------eEEEEEcCC-CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC
Confidence                    11                223333333 66788999999998642 11              11111  234


Q ss_pred             CeEEEEEccCCCEEEEEe--------cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          238 GLSILKWSPTGDYFFAAK--------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~--------~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      .+.+++|+|+|++|++++        .|+.|++||+++++......+...+..++|+|+++.+++++..++.+.+|++..
T Consensus       255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~  334 (433)
T 3bws_A          255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE  334 (433)
T ss_dssp             EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT
T ss_pred             CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC
Confidence            588999999999999777        488999999998876555556668899999999998887777888898888775


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCC------------CcceeEEEEEEeccCceEEEee
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD------------DIYKGLIAIYDARRTPLISLSL  377 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~------------d~~~g~i~vwd~~~~~~~~~~~  377 (427)
                      ...             ...+.....+.+++|+|+|++|+++..+..            |   |.|++||+.+++.+....
T Consensus       335 ~~~-------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~d---g~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          335 KKV-------------QKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVL---GKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             TEE-------------EEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSC---CEEEEEETTTTEEEEEEE
T ss_pred             CcE-------------EEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccc---eEEEEEECCCCcEEEEec
Confidence            311             112233457899999999999988644321            3   679999999887664322


Q ss_pred             eeeeeCCCCCCCceeEEeccCCCCCceeEEEee-CceEEEEec
Q 014302          378 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS-SGFCCTYPL  419 (427)
Q Consensus       378 ~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~-~g~i~~~~~  419 (427)
                           .   ...+.+++|.|+   |..|+++.. +|.|.+|++
T Consensus       399 -----~---~~~~~~~~~s~d---g~~l~~~~~~d~~i~v~~~  430 (433)
T 3bws_A          399 -----A---GNQPTGLDVSPD---NRYLVISDFLDHQIRVYRR  430 (433)
T ss_dssp             -----C---SSSEEEEEECTT---SCEEEEEETTTTEEEEEEE
T ss_pred             -----C---CCCCceEEEcCC---CCEEEEEECCCCeEEEEEe
Confidence                 2   123668999886   667777664 999999985

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=4.2e-24  Score=196.17  Aligned_cols=221  Identities=18%  Similarity=0.266  Sum_probs=152.8

Q ss_pred             ceeeeEEcC--CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC--CCceEEEe-cCCeEEEEeccCC
Q 014302          101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVG-CKGGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp--~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~la~g-~~~~i~iw~~~~~  175 (427)
                      .|++++|+|  ++++||+|+.|++|+|||+..+.........+|...|++++|+|+  + .+|++| .++.|++|++...
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYG-LILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTC-SCEEEECSSSCEEEEEECSS
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCC-cEEEEEcCCCCEEEEecCCC
Confidence            799999986  489999999999999999987633344455679999999999998  5 566665 4599999998711


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK  255 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  255 (427)
                                            ..+.....+..| ...+.+++|+|++..   +..+. +..+    ....++++|++++
T Consensus       138 ----------------------~~~~~~~~~~~h-~~~v~~~~~~~~~~~---~~~~~-~~~~----~~~~~~~~l~sgs  186 (316)
T 3bg1_A          138 ----------------------GQWEVKKINNAH-TIGCNAVSWAPAVVP---GSLID-HPSG----QKPNYIKRFASGG  186 (316)
T ss_dssp             ----------------------SCEEECCBTTSS-SSCBCCCEECCCCCC----------CCS----CCCCCCCBEECCB
T ss_pred             ----------------------CCcceeeeeccc-cCCcceEEEccccCC---ccccc-cccc----cCccccceEEEec
Confidence                                  012223334444 667888888887431   00000 0000    0112467899999


Q ss_pred             cCCcEEEEEcCCCC---c-cccccCCCCeeEEEECCCC----CEEEEEEcCCceeeeeeeCCCCC-Cccccccccccccc
Q 014302          256 FDGTFYLWETNTWT---S-EPWSSTSGFVTGATWDPEG----RMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVDLPDI  326 (427)
Q Consensus       256 ~dg~v~iwd~~~~~---~-~~~~~~~~~v~~v~~spdg----~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~  326 (427)
                      .|+.|++||++...   . ..+..|...|.+++|+|++    ++|++++ .++.+++|++..... ....         .
T Consensus       187 ~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s-~D~~v~iw~~~~~~~~~~~~---------~  256 (316)
T 3bg1_A          187 CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS-QDGRVFIWTCDDASSNTWSP---------K  256 (316)
T ss_dssp             TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE-TTCEEEEEECSSTTCCCCBC---------C
T ss_pred             CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc-CCCeEEEEEccCccccchhh---------h
Confidence            99999999997542   2 3445899999999999987    7787664 555888888765211 0000         0


Q ss_pred             eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ....+.+.|.+++|+|+|++||+   ++.|   ++|+||+...
T Consensus       257 ~~~~~~~~v~~v~~sp~g~~las---~~~D---~~v~lw~~~~  293 (316)
T 3bg1_A          257 LLHKFNDVVWHVSWSITANILAV---SGGD---NKVTLWKESV  293 (316)
T ss_dssp             EEEECSSCEEEEEECTTTCCEEE---EESS---SCEEEEEECT
T ss_pred             hhhcCCCcEEEEEEcCCCCEEEE---EcCC---CeEEEEEECC
Confidence            01123458999999999999999   4555   6699999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=7.1e-24  Score=196.98  Aligned_cols=237  Identities=13%  Similarity=0.107  Sum_probs=165.3

Q ss_pred             eEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccC
Q 014302          105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG  184 (427)
Q Consensus       105 l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~  184 (427)
                      ..+.+++.+|++|+.|++|++||+..+.  ......  ...|.++.|+|+   +++++.|+.+++|+.+.          
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~--~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~----------  104 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSK--TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN----------  104 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSS--CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT----------
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCc--EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC----------
Confidence            3456788999999999999999998772  222222  467888899988   66666779999999860          


Q ss_pred             cccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEE----eccCCeEEEEEcc--CCCEEEEEecCC
Q 014302          185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIR----RGFGGLSILKWSP--TGDYFFAAKFDG  258 (427)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~----~~~~~v~~~~~sp--~g~~l~~~~~dg  258 (427)
                                       .+......                  .+..++    .|...|.+++|+|  ++++|++++.||
T Consensus       105 -----------------~~~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg  149 (343)
T 3lrv_A          105 -----------------QITILDSK------------------TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRG  149 (343)
T ss_dssp             -----------------EEEEEETT------------------TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTC
T ss_pred             -----------------ceEEeecC------------------CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC
Confidence                             01001100                  111111    2447899999999  999999999999


Q ss_pred             cEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC---ccccccccccccceeeccCC
Q 014302          259 TFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS---LDAHLLPVDLPDIVSLTGSQ  333 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  333 (427)
                      .|++||+++++.....  .+...+.+++|+|+|++|++++ .++.+++|++......   +..             .+.+
T Consensus       150 ~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~-~dg~i~iwd~~~~~~~~~~~~~-------------~h~~  215 (343)
T 3lrv_A          150 TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYS-PDGILDVYNLSSPDQASSRFPV-------------DEEA  215 (343)
T ss_dssp             CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEEC-TTSCEEEEESSCTTSCCEECCC-------------CTTS
T ss_pred             cEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEc-CCCEEEEEECCCCCCCccEEec-------------cCCC
Confidence            9999999988874332  4566799999999999998765 5558889988775321   111             1345


Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee-Cc
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS-SG  412 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~-~g  412 (427)
                      .|.+++|+|+|.+|+++.   +    ++|++||++....+.... . +..........+++|.|+   |..|+++.. ++
T Consensus       216 ~v~~l~fs~~g~~l~s~~---~----~~v~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~---g~~l~~~s~~d~  283 (343)
T 3lrv_A          216 KIKEVKFADNGYWMVVEC---D----QTVVCFDLRKDVGTLAYP-T-YTIPEFKTGTVTYDIDDS---GKNMIAYSNESN  283 (343)
T ss_dssp             CEEEEEECTTSSEEEEEE---S----SBEEEEETTSSTTCBSSC-C-CBC-----CCEEEEECTT---SSEEEEEETTTT
T ss_pred             CEEEEEEeCCCCEEEEEe---C----CeEEEEEcCCCCcceeec-c-cccccccccceEEEECCC---CCEEEEecCCCC
Confidence            899999999999999953   2    249999998876532110 0 000111111146899986   778999888 99


Q ss_pred             eEEEEec
Q 014302          413 FCCTYPL  419 (427)
Q Consensus       413 ~i~~~~~  419 (427)
                      .|.+|++
T Consensus       284 ~i~v~~~  290 (343)
T 3lrv_A          284 SLTIYKF  290 (343)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            9999976

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.92  E-value=1.8e-23  Score=197.14  Aligned_cols=222  Identities=13%  Similarity=0.119  Sum_probs=155.4

Q ss_pred             ceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      .|.+++|+| ++++|++++.|+.|++||+.............|...|.+++|+|++..+++++.++.|++||+.      
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~------  193 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD------  193 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT------
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC------
Confidence            899999999 7789999999999999999864111112223355789999999999544444556999999985      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCC-CcccC------------------ceE--EeccCC
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGR-FPGLG------------------TPI--RRGFGG  238 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~------------------~~~--~~~~~~  238 (427)
                                       +   ..+..+..| ...|.+++|+|+++ +++++                  ..+  ..|...
T Consensus       194 -----------------~---~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  252 (383)
T 3ei3_B          194 -----------------G---HEIFKEKLH-KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKP  252 (383)
T ss_dssp             -----------------S---CEEEEEECS-SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSC
T ss_pred             -----------------C---CEEEEeccC-CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCc
Confidence                             1   123334555 78899999999998 43322                  111  247789


Q ss_pred             eEEEEEcc-CCCEEEEEecCCcEEEEEcCCCCccc-cc-------cCCCCeeEEEECCCCCEEEEEE--------cCCce
Q 014302          239 LSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEP-WS-------STSGFVTGATWDPEGRMILLAF--------AGSLT  301 (427)
Q Consensus       239 v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-------~~~~~v~~v~~spdg~~l~~~~--------~~~~~  301 (427)
                      +.+++|+| ++++|++++.|+.|++||+++++... +.       .+...+. +.|+|++..++++.        +.++.
T Consensus       253 v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~  331 (383)
T 3ei3_B          253 VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRT  331 (383)
T ss_dssp             EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCC
T ss_pred             eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCcccccCCCCe
Confidence            99999999 99999999999999999999877632 22       2233333 35555555544432        35668


Q ss_pred             eeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          302 LGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       302 i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      +++|++.....  .+.+            ..+.+.+..++|+|++++||++   + |   +.|+|||+++
T Consensus       332 i~iwd~~~~~~~~~l~~------------~~~~~~~~~~~~s~~g~~l~s~---s-d---~~i~iw~~~~  382 (383)
T 3ei3_B          332 IDIYDANSGGLVHQLRD------------PNAAGIISLNKFSPTGDVLASG---M-G---FNILIWNRED  382 (383)
T ss_dssp             EEEEETTTCCEEEEECB------------TTBCSCCCEEEECTTSSEEEEE---E-T---TEEEEEECC-
T ss_pred             EEEEecCCCceeeeecC------------CCCCceEEEEEEecCccEEEEe---c-C---CcEEEEecCC
Confidence            88888765421  1111            0123467788999999999984   3 4   6699999864

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9.9e-23  Score=189.22  Aligned_cols=235  Identities=8%  Similarity=0.024  Sum_probs=157.0

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCC-------CCc-ceeeccCCcCCeeEEEEcc--CCCceEEEecCCeEEE
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-------GKD-ACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICI  169 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~-------~~~-~~~~~~~~~~~v~~l~~sp--~~~~~la~g~~~~i~i  169 (427)
                      ..|.++.|+|+   +++++.|++|++|+....       ... .......|...|.+++|+|  ++..+++++.++.|++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            36788889998   999999999999987632       111 2233346778899999999  8854444556799999


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD  249 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~  249 (427)
                      ||+.         .+                ........                         .+...+.+++|+|+|+
T Consensus       154 wd~~---------~~----------------~~~~~~~~-------------------------~~~~~i~~~~~~pdg~  183 (343)
T 3lrv_A          154 QSYE---------DD----------------SQYIVHSA-------------------------KSDVEYSSGVLHKDSL  183 (343)
T ss_dssp             EESS---------SS----------------CEEEEECC-------------------------CSSCCCCEEEECTTSC
T ss_pred             EECC---------CC----------------cEEEEEec-------------------------CCCCceEEEEECCCCC
Confidence            9997         11                11111110                         1334688999999999


Q ss_pred             EEEEEecCCcEEEEEcCCCCcc--cccc-CCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC--ccccccccccc
Q 014302          250 YFFAAKFDGTFYLWETNTWTSE--PWSS-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS--LDAHLLPVDLP  324 (427)
Q Consensus       250 ~l~~~~~dg~v~iwd~~~~~~~--~~~~-~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~  324 (427)
                      +|++|+.||.|++||+++++..  .+.. |...|.+++|+|+|.+|++++ ++ .+++|++......  +.....     
T Consensus       184 ~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-~v~iwd~~~~~~~~~~~~~~~-----  256 (343)
T 3lrv_A          184 LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-TVVCFDLRKDVGTLAYPTYTI-----  256 (343)
T ss_dssp             EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SS-BEEEEETTSSTTCBSSCCCBC-----
T ss_pred             EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CC-eEEEEEcCCCCcceeeccccc-----
Confidence            9999999999999999998875  4455 899999999999999999877 55 8889988765321  111000     


Q ss_pred             cceeeccCCce--eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce-EEEeeeeeeeCCCCCCCceeEEeccCCCC
Q 014302          325 DIVSLTGSQGI--EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL-ISLSLIGFIRGPGDNPKPVAFSFHDKFKQ  401 (427)
Q Consensus       325 ~~~~~~~~~~i--~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  401 (427)
                            +...+  .+++|+|+|++|+++.  +.+   +.|+||++..... ....+            ..+++|.+....
T Consensus       257 ------~~~~~~~~~~~~~~~g~~l~~~s--~~d---~~i~v~~~~~~~~~~~~~~------------~~~~~~~~~~~~  313 (343)
T 3lrv_A          257 ------PEFKTGTVTYDIDDSGKNMIAYS--NES---NSLTIYKFDKKTKNWTKDE------------ESALCLQSDTAD  313 (343)
T ss_dssp             -----------CCEEEEECTTSSEEEEEE--TTT---TEEEEEEECTTTCSEEEEE------------EEECCC----CC
T ss_pred             ------ccccccceEEEECCCCCEEEEec--CCC---CcEEEEEEcccccceEecC------------ceeEecCccccc
Confidence                  00122  4699999999999952  213   5599999965432 21111            123344443223


Q ss_pred             CceeEEEeeCceEEEE
Q 014302          402 GPLLSVCWSSGFCCTY  417 (427)
Q Consensus       402 g~~l~v~~~~g~i~~~  417 (427)
                      +..|+++..+|.+.++
T Consensus       314 ~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          314 FTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             CCEEEEEEETTEEEEE
T ss_pred             cceeEEEecCCceEEE
Confidence            4556666677766654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=1.1e-23  Score=199.56  Aligned_cols=226  Identities=14%  Similarity=0.126  Sum_probs=141.5

Q ss_pred             CCCCC--ceeeeEEcC--------CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cC
Q 014302           96 LLPEV--DLQGVSWHQ--------HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CK  164 (427)
Q Consensus        96 ~l~~~--~V~~l~~sp--------~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~  164 (427)
                      .+.+|  .|++++|+|        |+++||+++.|++|+|||+...  ........|...|.+++|+|++..+|+++ .+
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~--~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d  208 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE--GPILAGYPLSSPGISVQFRPSNPNQLIVGERN  208 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT--EEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC--ceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence            35566  899999998        8899999999999999999876  44555567888999999999986666666 45


Q ss_pred             CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEE
Q 014302          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKW  244 (427)
Q Consensus       165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~  244 (427)
                      +.|++||+.........                     .. ........+......+    .........|...+.++.|
T Consensus       209 ~~v~~wd~~t~~~~~~~---------------------~~-~~~~~~~~~~s~~~~~----~~~~~~~~~~~~~v~~v~~  262 (393)
T 4gq1_A          209 GNIRIFDWTLNLSAEEN---------------------SQ-TELVKNPWLLTLNTLP----LVNTCHSSGIASSLANVRW  262 (393)
T ss_dssp             SEEEEEETTCCC--------------------------------CSCCCSEEEESGG----GC------CCSSSCSEEEE
T ss_pred             CEEEEEECCCCcccccc---------------------cc-cCCcccceEEeccccc----ceeeeecccccccceeeee
Confidence            99999999721110000                     00 0000011111111111    1112223457778999998


Q ss_pred             c-cCCCEEEEEecCCcEEEEEcCCCCccc-cccCCC------------------CeeEEEEC-CCCCEEEEEEcCCceee
Q 014302          245 S-PTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSG------------------FVTGATWD-PEGRMILLAFAGSLTLG  303 (427)
Q Consensus       245 s-p~g~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~------------------~v~~v~~s-pdg~~l~~~~~~~~~i~  303 (427)
                      + |+++.|++++.|+.+++||+...+... +..+..                  .....+|+ +.+..++++++.++.++
T Consensus       263 ~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~  342 (393)
T 4gq1_A          263 IGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQ  342 (393)
T ss_dssp             ETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEE
T ss_pred             ecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEE
Confidence            6 899999999999999999998765421 112221                  22233343 34556666677788999


Q ss_pred             eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      +|++......            .....++..|.+|+|+|||++||++   +++    -+.+|.+.
T Consensus       343 lwd~~~~~~~------------~~~~~~~~~V~svafspdG~~LA~a---s~~----Gv~lvrL~  388 (393)
T 4gq1_A          343 LINTYEKDSN------------SIPIQLGMPIVDFCWHQDGSHLAIA---TEG----SVLLTRLM  388 (393)
T ss_dssp             EEETTCTTCC------------EEEEECSSCEEEEEECTTSSEEEEE---ESS----EEEEEEEG
T ss_pred             EEECCCCcEE------------EEecCCCCcEEEEEEcCCCCEEEEE---eCC----CeEEEEEe
Confidence            9988765221            1123345589999999999999995   333    27777764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.91  E-value=1.5e-22  Score=195.74  Aligned_cols=278  Identities=12%  Similarity=0.108  Sum_probs=184.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc--CCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP--NGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp--~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|++++|+|++ +|++|+.|++|++||+..+  .......+|...|.+++|++  ++..+++++.++.|++|++......
T Consensus       164 ~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~  240 (464)
T 3v7d_B          164 GVWALKYAHGG-ILVSGSTDRTVRVWDIKKG--CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV  240 (464)
T ss_dssp             CEEEEEECSTT-EEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred             CEEEEEEcCCC-EEEEEeCCCCEEEEECCCC--cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence            89999999988 9999999999999999877  45566678999999999995  5533444456699999999732211


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC--------------ce---EEeccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG--------------TP---IRRGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--------------~~---~~~~~~~v~~  241 (427)
                      ..........  ...............+..+ ...+.++  +++++++..+              ..   +..|...+.+
T Consensus       241 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~  315 (464)
T 3v7d_B          241 PDHGEEHDYP--LVFHTPEENPYFVGVLRGH-MASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYS  315 (464)
T ss_dssp             ------CCSS--EEESCGGGCTTEEEEECCC-SSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ccccccCCcc--eEeeccCCCeEEEEEccCc-cceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEE
Confidence            1100000000  0000000011122233333 4445544  3445443322              12   3347789999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      ++|+|++++|++++.||.|++||+++++.. .+..|...|.+++|+  +++|++++ .++.+++|++.+....+      
T Consensus       316 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s-~dg~v~vwd~~~~~~~~------  386 (464)
T 3v7d_B          316 TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAA-ADGSIRGWDANDYSRKF------  386 (464)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEE-TTSEEEEEETTTCCEEE------
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEe-CCCcEEEEECCCCceee------
Confidence            999999999999999999999999988774 445899999999998  57888765 45588888877642111      


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                             ...+...+..++|+|++++|+++   + |   +.|++||+++++++....      ........+++|.    
T Consensus       387 -------~~~~~~~~~~~~~~~~~~~l~~~---~-d---g~i~iwd~~~g~~~~~~~------~~~~~~v~~v~~~----  442 (464)
T 3v7d_B          387 -------SYHHTNLSAITTFYVSDNILVSG---S-E---NQFNIYNLRSGKLVHANI------LKDADQIWSVNFK----  442 (464)
T ss_dssp             -------EEECTTCCCEEEEEECSSEEEEE---E-T---TEEEEEETTTCCEEESCT------TTTCSEEEEEEEE----
T ss_pred             -------eecCCCCccEEEEEeCCCEEEEe---c-C---CeEEEEECCCCcEEehhh------ccCCCcEEEEEec----
Confidence                   11233467888999999999984   3 3   569999999988763211      1122336678885    


Q ss_pred             CCceeEEEeeCceEEEEec
Q 014302          401 QGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       401 ~g~~l~v~~~~g~i~~~~~  419 (427)
                      ...+++.+..+|.+.++-+
T Consensus       443 ~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          443 GKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             TTEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEEEeCCeEEEEEe
Confidence            3456777767776665544

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.91  E-value=3.6e-23  Score=198.67  Aligned_cols=195  Identities=16%  Similarity=0.131  Sum_probs=143.9

Q ss_pred             cCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeE
Q 014302          140 SDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALS  218 (427)
Q Consensus       140 ~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  218 (427)
                      ..|...|++|+|+|....+||+|+ ++.|+|||+...                       .......+.+| ...|++++
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-----------------------~~~~~~~~~gH-~~~V~~l~  171 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-----------------------DKPTFIKGIGA-GGSITGLK  171 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-----------------------SCCEEECCCSS-SCCCCEEE
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-----------------------CceeEEEccCC-CCCEEEEE
Confidence            457888999999997667888875 599999998711                       11222334445 78899999


Q ss_pred             eCC-CCCCcccCce----------------EEe---ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCC
Q 014302          219 WGP-DGRFPGLGTP----------------IRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSG  278 (427)
Q Consensus       219 ~sp-dg~~l~~~~~----------------~~~---~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~  278 (427)
                      |+| +++++.++..                +..   +...+.+++|+|++++|++|+.||.|++||++......+..|..
T Consensus       172 f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~  251 (435)
T 4e54_B          172 FNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKK  251 (435)
T ss_dssp             ECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSS
T ss_pred             EeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccc
Confidence            998 6777554321                111   22346789999999999999999999999998766666778999


Q ss_pred             CeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcc
Q 014302          279 FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIY  358 (427)
Q Consensus       279 ~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~  358 (427)
                      .|.+++|+|++..++++++.++.+++|++........         ......+...|++++|+|+|++|++   ++.|  
T Consensus       252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~---------~~~~~~h~~~v~~~~~spdg~~l~s---~~~D--  317 (435)
T 4e54_B          252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS---------FLYSLPHRHPVNAACFSPDGARLLT---TDQK--  317 (435)
T ss_dssp             CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC---------CSBCCBCSSCEEECCBCTTSSEEEE---EESS--
T ss_pred             eEEeeeecCCCceEEEEecCcceeeEEecccccccce---------EEEeeeccccccceeECCCCCeeEE---EcCC--
Confidence            9999999999986555566677888888876421100         0111234458999999999999999   5556  


Q ss_pred             eeEEEEEEeccCceE
Q 014302          359 KGLIAIYDARRTPLI  373 (427)
Q Consensus       359 ~g~i~vwd~~~~~~~  373 (427)
                       |+|+|||+.++.+.
T Consensus       318 -~~i~iwd~~~~~~~  331 (435)
T 4e54_B          318 -SEIRVYSASQWDCP  331 (435)
T ss_dssp             -SCEEEEESSSSSSE
T ss_pred             -CEEEEEECCCCccc
Confidence             66999999887654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9.5e-23  Score=195.24  Aligned_cols=233  Identities=12%  Similarity=0.108  Sum_probs=160.1

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcC-----CeeEEEEccCCCceEEEe-cCCeEEEEecc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR-----DVKVLEWRPNGGRSLSVG-CKGGICIWAPS  173 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----~v~~l~~sp~~~~~la~g-~~~~i~iw~~~  173 (427)
                      ..|.+++|||+|++||+++.||+|+||+.+.    ...... |..     .|.+++||||| ++||+| .|++|+||++.
T Consensus        86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             CCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSS-SCEEEEETTSEEEEEECC
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCC-CEEEEEcCCCEEEEEECC
Confidence            3799999999999999999999999999543    222223 443     59999999999 555555 56999999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                      . +..                 ....+..+..++.+                      ..+|...|.+++|+|||  +++
T Consensus       160 ~-~~l-----------------~~~~~i~l~ti~~~----------------------~~gh~~~V~sVawSPdg--Laa  197 (588)
T 2j04_A          160 K-NSE-----------------NTPEFYFESSIRLS----------------------DAGSKDWVTHIVWYEDV--LVA  197 (588)
T ss_dssp             C-CTT-----------------TCCCCEEEEEEECS----------------------CTTCCCCEEEEEEETTE--EEE
T ss_pred             C-Ccc-----------------ccccceeeeeeecc----------------------cccccccEEEEEEcCCc--EEE
Confidence            1 000                 00000011111111                      12255689999999999  888


Q ss_pred             EecCCcEEEEEcCCCCccc----c-ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-Cccccccccccccce
Q 014302          254 AKFDGTFYLWETNTWTSEP----W-SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVDLPDIV  327 (427)
Q Consensus       254 ~~~dg~v~iwd~~~~~~~~----~-~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~  327 (427)
                      ++.|++|++||+.......    + ..|...|.+++|+  |+.|++++ + +.+++|++.+... .+.            
T Consensus       198 ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~-~tIkLWd~~~~~~~~~~------------  261 (588)
T 2j04_A          198 ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-P-GYVHKIDLKNYSISSLK------------  261 (588)
T ss_dssp             EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-S-SEEEEEETTTTEEEEEE------------
T ss_pred             EeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-C-CeEEEEECCCCeEEEEE------------
Confidence            8889999999998877532    3 2677899999999  68888775 3 5888888776522 111            


Q ss_pred             eeccCCceeEEEE--CCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeee-----------CCCCCC------
Q 014302          328 SLTGSQGIEKIAW--DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIR-----------GPGDNP------  388 (427)
Q Consensus       328 ~~~~~~~i~~v~~--sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~-----------~~~~~~------  388 (427)
                       ..+.+.|.+++|  +||+..|++   +.++   |+ +||....   +...|.+.+.           ..+...      
T Consensus       262 -~gh~~~V~~va~~~s~d~~~La~---a~ed---G~-klw~~d~---~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~  330 (588)
T 2j04_A          262 -TGSLENFHIIPLNHEKESTILLM---SNKT---SY-KVLLEDE---LHVTADNIIAPYLEKKFKKWSTIWNEFNNYETT  330 (588)
T ss_dssp             -CSCCSCCCEEEETTCSSCEEEEE---CSSC---EE-EEEESSS---EEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCE
T ss_pred             -cCCCceEEEEEeeeCCCCCEEEE---EcCC---CC-EEEeecc---EEECCCceEEEEcCCEEEEEECCCCceeeeccc
Confidence             124448899999  999999988   6666   88 9999762   3344333111           000111      


Q ss_pred             -CceeEEeccCCCCCceeEEEee
Q 014302          389 -KPVAFSFHDKFKQGPLLSVCWS  410 (427)
Q Consensus       389 -~~~~~~f~~~~~~g~~l~v~~~  410 (427)
                       ...+++|.|+   |.++|+++.
T Consensus       331 ~~I~~va~SPd---G~~lA~~~~  350 (588)
T 2j04_A          331 LVIHGISLSPD---GYSIAIVYD  350 (588)
T ss_dssp             EEEEEEEECTT---SSEEEEEEE
T ss_pred             eEEEEEEECCC---CCEEEEEEe
Confidence             1456899886   889999876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=9.1e-23  Score=186.20  Aligned_cols=222  Identities=16%  Similarity=0.143  Sum_probs=164.8

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC-CcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG-KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      ..|++++|+|++++|++++.|+.+++|++.... .........|...|.+++|  ++..+++++.++.+++|+..     
T Consensus        60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~-----  132 (313)
T 3odt_A           60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG-----  132 (313)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-----
T ss_pred             ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-----
Confidence            379999999999999999999999999987762 2334455679999999999  34355555667999999944     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccCc---------------eEEe-ccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLGT---------------PIRR-GFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~---------------~~~~-~~~~v~~  241 (427)
                                            .....+..+ ...+.+++|.| +++.+..+.               .+.. +...+.+
T Consensus       133 ----------------------~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~  189 (313)
T 3odt_A          133 ----------------------SLVYNLQAH-NASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRH  189 (313)
T ss_dssp             ----------------------EEEEEEECC-SSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEE
T ss_pred             ----------------------cEEEecccC-CCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEE
Confidence                                  233344444 77888888888 777654332               1222 6788999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      ++|+|++. +++++.|+.|++||+++++.. .+..|...+.+++|+|++. |++++ .++.+++|++.+....       
T Consensus       190 ~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~-------  259 (313)
T 3odt_A          190 LAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCG-EDRTVRIWSKENGSLK-------  259 (313)
T ss_dssp             EEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEE-TTSEEEEECTTTCCEE-------
T ss_pred             EEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEe-cCCEEEEEECCCCcee-------
Confidence            99999998 889999999999999988764 4447999999999999994 66554 5558888877664210       


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                           .....+...|.+++|+|+++++ +   ++.|   |.|++||++++...
T Consensus       260 -----~~~~~~~~~i~~~~~~~~~~~~-~---~~~d---g~i~iw~~~~~~~~  300 (313)
T 3odt_A          260 -----QVITLPAISIWSVDCMSNGDII-V---GSSD---NLVRIFSQEKSRWA  300 (313)
T ss_dssp             -----EEEECSSSCEEEEEECTTSCEE-E---EETT---SCEEEEESCGGGCC
T ss_pred             -----EEEeccCceEEEEEEccCCCEE-E---EeCC---CcEEEEeCCCCcee
Confidence                 0111233489999999999955 4   3334   56999999887654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.91  E-value=2.4e-22  Score=192.81  Aligned_cols=255  Identities=10%  Similarity=0.139  Sum_probs=177.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.+++|  ++++|++|+.|++|++||+.+.  .......+|...|.+++|  ++..+++++.++.|++|++.       
T Consensus       135 ~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~-------  201 (435)
T 1p22_A          135 GVYCLQY--DDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN-------  201 (435)
T ss_dssp             CEEEEEC--CSSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS-------
T ss_pred             cEEEEEE--CCCEEEEEeCCCeEEEEeCCCC--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC-------
Confidence            5777766  8999999999999999999877  555666789999999999  56344444566999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC--------------------ceEEeccCCeE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG--------------------TPIRRGFGGLS  240 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--------------------~~~~~~~~~v~  240 (427)
                        ++                .....+..| ...|.+++|+++  .+.++                    ..+..|...|.
T Consensus       202 --~~----------------~~~~~~~~h-~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  260 (435)
T 1p22_A          202 --TG----------------EMLNTLIHH-CEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  260 (435)
T ss_dssp             --SC----------------CEEEEECCC-CSCEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred             --CC----------------cEEEEEcCC-CCcEEEEEEcCC--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence              11                233444444 677888888643  22111                    12334778899


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      +++|  ++++|++++.||.|++||+++++.. .+..|...+.+++|  +++++++++ .++.+++|++......      
T Consensus       261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~-~dg~i~iwd~~~~~~~------  329 (435)
T 1p22_A          261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGS-SDNTIRLWDIECGACL------  329 (435)
T ss_dssp             EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEE-TTSCEEEEETTTCCEE------
T ss_pred             EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEe-CCCeEEEEECCCCCEE------
Confidence            9988  7899999999999999999988774 44478899999999  467888765 4558888888764210      


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe----eeeeeeCCCCCCCceeEEe
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS----LIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~f  395 (427)
                            .....+...|.+++|  ++++|++   ++.|   |.|++||+.++......    ....+.+...  ...+++|
T Consensus       330 ------~~~~~h~~~v~~~~~--~~~~l~s---g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~  393 (435)
T 1p22_A          330 ------RVLEGHEELVRCIRF--DNKRIVS---GAYD---GKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF  393 (435)
T ss_dssp             ------EEECCCSSCEEEEEC--CSSEEEE---EETT---SCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE
T ss_pred             ------EEEeCCcCcEEEEEe--cCCEEEE---EeCC---CcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe
Confidence                  001123447899999  7889988   5555   66999999765410000    0112222222  3557778


Q ss_pred             ccCCCCCceeEEEeeCceEEEEeccc
Q 014302          396 HDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       396 ~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      .     +..|++|..||.|.+|++.-
T Consensus       394 ~-----~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          394 D-----EFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             C-----SSCEEECCSSSEEEEEC---
T ss_pred             C-----CCEEEEEeCCCEEEEEECCC
Confidence            2     55688898999999999753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.91  E-value=1.8e-22  Score=194.10  Aligned_cols=233  Identities=13%  Similarity=0.207  Sum_probs=160.5

Q ss_pred             ceeeeEEcCCC--CEEEEEeCCCeEEEEEccCCCCc--------------------------------------ceeecc
Q 014302          101 DLQGVSWHQHK--HIVAFISGSTQVIVRDYEDSGKD--------------------------------------ACILTS  140 (427)
Q Consensus       101 ~V~~l~~sp~g--~~lat~~~d~~v~vwd~~~~~~~--------------------------------------~~~~~~  140 (427)
                      .|++++|+|++  .+|++++.|++|+||++......                                      ......
T Consensus        95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (447)
T 3dw8_B           95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN  174 (447)
T ss_dssp             CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred             ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence            59999999998  79999999999999998763110                                      012235


Q ss_pred             CCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEee-------hhcccCCCc
Q 014302          141 DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVD-------FLRSQNGEQ  213 (427)
Q Consensus       141 ~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  213 (427)
                      +|...|.+++|+|++ .+|++|.++.|++|++..         .              . ....       .+..| ...
T Consensus       175 ~h~~~v~~~~~~~~~-~~l~s~~d~~i~iwd~~~---------~--------------~-~~~~~~~~~~~~~~~~-~~~  228 (447)
T 3dw8_B          175 AHTYHINSISINSDY-ETYLSADDLRINLWHLEI---------T--------------D-RSFNIVDIKPANMEEL-TEV  228 (447)
T ss_dssp             CCSSCCCEEEECTTS-SEEEEECSSEEEEEETTE---------E--------------E-EEEEEEECCCSSGGGC-CCC
T ss_pred             CCCcceEEEEEcCCC-CEEEEeCCCeEEEEECCC---------C--------------C-ceeeeeeccccccccc-Ccc
Confidence            799999999999998 677777789999999971         1              0 1111       24444 778


Q ss_pred             eeeeEeCCCC-CCcccCc---------------------eEEeccC------------CeEEEEEccCCCEEEEEecCCc
Q 014302          214 ITALSWGPDG-RFPGLGT---------------------PIRRGFG------------GLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       214 v~~~~~spdg-~~l~~~~---------------------~~~~~~~------------~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                      |.+++|+|++ ++++++.                     .+..|..            .|.+++|+|+|++|++++. +.
T Consensus       229 v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~  307 (447)
T 3dw8_B          229 ITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS  307 (447)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE
T ss_pred             eEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce
Confidence            9999999998 6644221                     1223333            8999999999999999998 99


Q ss_pred             EEEEEcCC-CCcc-ccccCCCC---------------eeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-Ccccccccc
Q 014302          260 FYLWETNT-WTSE-PWSSTSGF---------------VTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPV  321 (427)
Q Consensus       260 v~iwd~~~-~~~~-~~~~~~~~---------------v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~  321 (427)
                      |++||+++ .+.. .+..|...               +..++|+|+|++|+++ +.++.+++|++..... .+..+..+.
T Consensus       308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~-s~dg~v~iwd~~~~~~~~~~~~~~~~  386 (447)
T 3dw8_B          308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTG-SYNNFFRMFDRNTKRDITLEASRENN  386 (447)
T ss_dssp             EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEE-CSTTEEEEEETTTCCEEEEECCSTTC
T ss_pred             EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEe-ccCCEEEEEEcCCCcceeeeeccccc
Confidence            99999987 5543 33344321               3349999999999876 5556899998876422 222221111


Q ss_pred             ccc-------------------cceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          322 DLP-------------------DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       322 ~~~-------------------~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      ...                   ....+.....|..++|+|++.+||++   +.+    .+++|..+
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~---~~~----~~~~~~~~  445 (447)
T 3dw8_B          387 KPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVA---TTN----NLYIFQDK  445 (447)
T ss_dssp             CTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEE---CSS----CEEEEECC
T ss_pred             ccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEE---ecc----eeeeeccc
Confidence            000                   00112234578999999999999994   332    28898754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.6e-22  Score=188.20  Aligned_cols=208  Identities=18%  Similarity=0.262  Sum_probs=151.5

Q ss_pred             ceeeeEEcCC--CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC--CCceEEEecCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~--g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      .|++++|+|+  +++|++++.|+.|+|||+.............|...|.+++|+|+  +..+++++.++.|++|++....
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  136 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  136 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence            7999999987  89999999999999999998732255556678999999999999  7445555566999999997110


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc----------
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP----------  246 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp----------  246 (427)
                      .                       ....                          .+..|...+.+++|+|          
T Consensus       137 ~-----------------------~~~~--------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (379)
T 3jrp_A          137 T-----------------------TSPI--------------------------IIDAHAIGVNSASWAPATIEEDGEHN  167 (379)
T ss_dssp             C-----------------------CCEE--------------------------EEECCTTCEEEEEECCCC--------
T ss_pred             c-----------------------eeeE--------------------------EecCCCCceEEEEEcCcccccccccc
Confidence            0                       0011                          1222444555555655          


Q ss_pred             ---CCCEEEEEecCCcEEEEEcCCCCcc-----ccccCCCCeeEEEECCC---CCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          247 ---TGDYFFAAKFDGTFYLWETNTWTSE-----PWSSTSGFVTGATWDPE---GRMILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       247 ---~g~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~v~~v~~spd---g~~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                         ++++|++++.|+.|++||+++....     .+..|...|.+++|+|+   +++|++++ .++.+++|++........
T Consensus       168 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~  246 (379)
T 3jrp_A          168 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWK  246 (379)
T ss_dssp             --CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE-TTSCEEEEEESSTTSCCE
T ss_pred             CCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe-CCCEEEEEeCCCCCccce
Confidence               7999999999999999999877642     23378999999999999   78888765 555888888876421111


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      ...       .....+...|.+++|+|+|++|+++   +.|   |.|++|++....
T Consensus       247 ~~~-------~~~~~~~~~v~~~~~s~~g~~l~~~---~~d---g~i~iw~~~~~~  289 (379)
T 3jrp_A          247 KTL-------LKEEKFPDVLWRASWSLSGNVLALS---GGD---NKVTLWKENLEG  289 (379)
T ss_dssp             EEE-------SSSSCCSSCEEEEEECSSSCCEEEE---ESS---SSEEEEEEEETT
T ss_pred             eee-------eccccCCCcEEEEEEcCCCCEEEEe---cCC---CcEEEEeCCCCC
Confidence            000       1111244589999999999999984   445   569999998543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.91  E-value=1.5e-21  Score=184.38  Aligned_cols=252  Identities=14%  Similarity=0.102  Sum_probs=181.6

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCccccccCcccccc
Q 014302          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAASVRSGAASFLG  190 (427)
Q Consensus       112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~~~~~~~~~~~~  190 (427)
                      .++++++.|+.|++||+..+  +.......| ..+.+++|+|++..+++++ .++.|++||+.         ++      
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~--~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~---------~~------   64 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN--KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA---------TN------   64 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT--EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT---------TT------
T ss_pred             EEEEEcCCCCEEEEEECCCC--eEEEEeecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC---------CC------
Confidence            46788889999999999876  343333444 4689999999996665666 56999999987         11      


Q ss_pred             cccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-cC--------------ceE--EeccCCeEEEEEccCCCEEE-
Q 014302          191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-LG--------------TPI--RRGFGGLSILKWSPTGDYFF-  252 (427)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~--------------~~~--~~~~~~v~~~~~sp~g~~l~-  252 (427)
                                .....+..+  ..+.+++|+|+|+++. .+              ..+  ..+...+.+++|+|++++|+ 
T Consensus        65 ----------~~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           65 ----------NVIATVPAG--SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYV  132 (391)
T ss_dssp             ----------EEEEEEECS--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEE
T ss_pred             ----------eEEEEEECC--CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEE
Confidence                      233334433  3889999999998643 11              111  12345789999999999884 


Q ss_pred             EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302          253 AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       253 ~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      +++.++.|++||+.+++..........+..++|+|+|++|++++..++.+++|++.....             ...+.+.
T Consensus       133 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-------------~~~~~~~  199 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-------------IDTVKVE  199 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-------------EEEEECS
T ss_pred             EeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-------------EEEEecC
Confidence            888899999999998877555555567899999999999977777777898888765411             1122234


Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCcee-EEEeeC
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLL-SVCWSS  411 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l-~v~~~~  411 (427)
                      ..+.+++|+|+|++|+++..+..+   +.|++||++++..+...+     ..   ..+.+++|.|+   |..| +.+..+
T Consensus       200 ~~~~~~~~~~~g~~l~~~~~~~~~---~~v~~~d~~~~~~~~~~~-----~~---~~~~~~~~s~d---g~~l~~s~~~d  265 (391)
T 1l0q_A          200 AAPSGIAVNPEGTKAYVTNVDKYF---NTVSMIDTGTNKITARIP-----VG---PDPAGIAVTPD---GKKVYVALSFX  265 (391)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSC---CEEEEEETTTTEEEEEEE-----CC---SSEEEEEECTT---SSEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEecCcCC---CcEEEEECCCCeEEEEEe-----cC---CCccEEEEccC---CCEEEEEcCCC
Confidence            478999999999999986432234   679999999887653322     21   13568899886   5544 566779


Q ss_pred             ceEEEEecc
Q 014302          412 GFCCTYPLI  420 (427)
Q Consensus       412 g~i~~~~~~  420 (427)
                      +.|.+|++-
T Consensus       266 ~~v~v~d~~  274 (391)
T 1l0q_A          266 NTVSVIDTA  274 (391)
T ss_dssp             TEEEEEETT
T ss_pred             CEEEEEECC
Confidence            999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.90  E-value=2.4e-22  Score=190.20  Aligned_cols=250  Identities=13%  Similarity=0.096  Sum_probs=157.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc---ceeeccCCcCCeeEEEEcc--------CCCceEEEe-cCCeEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRP--------NGGRSLSVG-CKGGIC  168 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~v~~l~~sp--------~~~~~la~g-~~~~i~  168 (427)
                      .+....+++++.+||+++.|++|+|||...+...   ......+|...|++++|+|        |+ ++||++ .|++|+
T Consensus        91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~  169 (393)
T 4gq1_A           91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLI  169 (393)
T ss_dssp             ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEE
T ss_pred             CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEE
Confidence            3455566778889999999999999999877221   1223567999999999998        66 677766 459999


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG  248 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g  248 (427)
                      |||+.         .+                ....                          .+..|...+.+++|+|++
T Consensus       170 ~Wd~~---------~~----------------~~~~--------------------------~~~~~~~~v~~v~~~p~~  198 (393)
T 4gq1_A          170 IWRLT---------DE----------------GPIL--------------------------AGYPLSSPGISVQFRPSN  198 (393)
T ss_dssp             EEEEE---------TT----------------EEEE--------------------------EEEECSSCEEEEEEETTE
T ss_pred             EEECC---------CC----------------ceee--------------------------eecCCCCCcEEEEECCCC
Confidence            99986         11                1111                          233466788999999988


Q ss_pred             C-EEEEEecCCcEEEEEcCCCCccc--------------------------cccCCCCeeEEEEC-CCCCEEEEEEcCCc
Q 014302          249 D-YFFAAKFDGTFYLWETNTWTSEP--------------------------WSSTSGFVTGATWD-PEGRMILLAFAGSL  300 (427)
Q Consensus       249 ~-~l~~~~~dg~v~iwd~~~~~~~~--------------------------~~~~~~~v~~v~~s-pdg~~l~~~~~~~~  300 (427)
                      . +|++++.|++|++||+++++...                          ...|...+.++.|+ |||+.|+++ ..++
T Consensus       199 ~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~-s~d~  277 (393)
T 4gq1_A          199 PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM-CKSG  277 (393)
T ss_dssp             EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE-CTTS
T ss_pred             CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE-eCCC
Confidence            5 68899999999999998765311                          11466778889986 899999876 4555


Q ss_pred             eeeeeeeCCCCC--Cccccccccc----cccceeeccCC-ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          301 TLGSIHFASKPP--SLDAHLLPVD----LPDIVSLTGSQ-GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       301 ~i~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~-~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      .+++|++.....  .+..+...+.    .+......... .+..+.+.+.+.+++++  ++.|   |+|+|||+.++...
T Consensus       278 ~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--gs~D---g~V~lwd~~~~~~~  352 (393)
T 4gq1_A          278 AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATA--HSQH---GLIQLINTYEKDSN  352 (393)
T ss_dssp             EEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEE--ETTT---TEEEEEETTCTTCC
T ss_pred             CEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEE--ECCC---CEEEEEECCCCcEE
Confidence            888888765421  2222221110    11111222222 23334444445555554  7777   77999999987765


Q ss_pred             EEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          374 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ... .    +..  ....+++|+|+   |..||++.. +.+.+|.+
T Consensus       353 ~~~-~----~~~--~~V~svafspd---G~~LA~as~-~Gv~lvrL  387 (393)
T 4gq1_A          353 SIP-I----QLG--MPIVDFCWHQD---GSHLAIATE-GSVLLTRL  387 (393)
T ss_dssp             EEE-E----ECS--SCEEEEEECTT---SSEEEEEES-SEEEEEEE
T ss_pred             EEe-c----CCC--CcEEEEEEcCC---CCEEEEEeC-CCeEEEEE
Confidence            322 1    111  23668999996   889999955 55666653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.90  E-value=6.9e-22  Score=182.89  Aligned_cols=238  Identities=10%  Similarity=0.064  Sum_probs=167.3

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEc-cCCCCcceeeccC--CcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDY-EDSGKDACILTSD--SQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~-~~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      .|++++|+|+++ +|++++.|+.|++|++ ...   .......  |...|.+++|+| +..+++++.++.|++|++.   
T Consensus        58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~---  130 (342)
T 1yfq_A           58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP---SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPR---  130 (342)
T ss_dssp             CEEEEEEEESSSEEEEEEETTSCEEEECSSSSS---SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHH---
T ss_pred             ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC---ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccc---
Confidence            799999999999 9999999999999999 766   3345556  999999999999 7455555667999999986   


Q ss_pred             CccccccCcccccccccCCCCcc---eeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          177 NAASVRSGAASFLGALSRGPGTR---WTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                            ..          .....   ..++.                          .+. +...+.+++|+|++  |++
T Consensus       131 ------~~----------~~~~~~~~~~~~~--------------------------~~~-~~~~v~~~~~~~~~--l~~  165 (342)
T 1yfq_A          131 ------NY----------GDGVIAVKNLNSN--------------------------NTK-VKNKIFTMDTNSSR--LIV  165 (342)
T ss_dssp             ------HH----------TTBCEEEEESCSS--------------------------SSS-SCCCEEEEEECSSE--EEE
T ss_pred             ------cc----------ccccccccCCeee--------------------------EEe-eCCceEEEEecCCc--EEE
Confidence                  10          00000   00000                          111 45678899999887  889


Q ss_pred             EecCCcEEEEEcCC-CCcc---ccccCCCCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCC------CC--Cccccccc
Q 014302          254 AKFDGTFYLWETNT-WTSE---PWSSTSGFVTGATWDP-EGRMILLAFAGSLTLGSIHFASK------PP--SLDAHLLP  320 (427)
Q Consensus       254 ~~~dg~v~iwd~~~-~~~~---~~~~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~------~~--~~~~~~~~  320 (427)
                      ++.|+.|++||+++ ....   ....+...+.+++|+| +++++++++. ++.+.+|++...      ..  .+..|...
T Consensus       166 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T 1yfq_A          166 GMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             EESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             EeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-CCcEEEEEEcCCCcccccccceeeeccccc
Confidence            99999999999998 5542   2236788999999999 9999998765 558888877654      11  11111110


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                      .     ....+...|.+++|+|++++|++   ++.|   |.|++||+.++..+..     +.+.. .....+++  |   
T Consensus       245 ~-----~~~~~~~~i~~~~~s~~~~~l~~---~~~d---g~i~vwd~~~~~~~~~-----~~~~h-~~~v~~~~--~---  302 (342)
T 1yfq_A          245 L-----KDTNLAYPVNSIEFSPRHKFLYT---AGSD---GIISCWNLQTRKKIKN-----FAKFN-EDSVVKIA--C---  302 (342)
T ss_dssp             T-----TCCSSCCCEEEEEECTTTCCEEE---EETT---SCEEEEETTTTEEEEE-----CCCCS-SSEEEEEE--E---
T ss_pred             c-----cccccceeEEEEEEcCCCCEEEE---ecCC---ceEEEEcCccHhHhhh-----hhccc-CCCceEec--C---
Confidence            0     00112348999999999999998   4555   6699999998876522     22220 22244565  4   


Q ss_pred             CCceeEEEeeCce
Q 014302          401 QGPLLSVCWSSGF  413 (427)
Q Consensus       401 ~g~~l~v~~~~g~  413 (427)
                      ++..|++|..||.
T Consensus       303 ~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          303 SDNILCLATSDDT  315 (342)
T ss_dssp             CSSEEEEEEECTH
T ss_pred             CCCeEEEEecCCc
Confidence            4778999999998

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.90  E-value=1.8e-21  Score=187.37  Aligned_cols=258  Identities=12%  Similarity=0.181  Sum_probs=182.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.+++|+  +++|++|+.|++|++||+..+  .......+|...|.+++|+++  .+++++.++.|++|++.       
T Consensus       161 ~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~~~--~l~s~s~dg~i~~wd~~-------  227 (445)
T 2ovr_B          161 GVWSSQMR--DNIIISGSTDRTLKVWNAETG--ECIHTLYGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIE-------  227 (445)
T ss_dssp             CEEEEEEE--TTEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEEETT--EEEEEETTSEEEEEESS-------
T ss_pred             CEEEEEec--CCEEEEEeCCCeEEEEECCcC--cEEEEECCCCCcEEEEEecCC--EEEEEeCCCEEEEEECC-------
Confidence            78888887  568999999999999998876  455556678888999998632  45555567889999987       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~~  243 (427)
                        ++                .....+..+ ...+.+++|  ++++++.+.                 .+..|...+.+++
T Consensus       228 --~~----------------~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  286 (445)
T 2ovr_B          228 --TG----------------QCLHVLMGH-VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ  286 (445)
T ss_dssp             --SC----------------CEEEEEECC-SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEE
T ss_pred             --CC----------------cEEEEEcCC-cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEE
Confidence              11                233444454 777888888  555544221                 1334778899999


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLP  320 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~  320 (427)
                      |  ++.+|++++.|+.|++||+++++.. .+..|...+.++.++  ++++++++ .++.+.+|++.+...  .+.++   
T Consensus       287 ~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~---  358 (445)
T 2ovr_B          287 F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN-ADSTVKIWDIKTGQCLQTLQGP---  358 (445)
T ss_dssp             E--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE-TTSCEEEEETTTCCEEEEECST---
T ss_pred             E--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe-CCCeEEEEECCCCcEEEEEccC---
Confidence            8  8899999999999999999988874 344788888888774  67887765 455888888765421  11110   


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                              ..+...|.+++|+  +++|++   ++.|   |.|++||+.+++.+.....  ...........+++|.|+  
T Consensus       359 --------~~~~~~v~~~~~~--~~~l~s---~~~d---g~v~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~--  418 (445)
T 2ovr_B          359 --------NKHQSAVTCLQFN--KNFVIT---SSDD---GTVKLWDLKTGEFIRNLVT--LESGGSGGVVWRIRASNT--  418 (445)
T ss_dssp             --------TSCSSCEEEEEEC--SSEEEE---EETT---SEEEEEETTTCCEEEEEEE--CTTGGGTCEEEEEEECSS--
T ss_pred             --------CCCCCCEEEEEEC--CCEEEE---EeCC---CeEEEEECCCCceeeeeec--cccCCCCceEEEEEecCC--
Confidence                    0134579999996  578888   5556   7799999999876533210  011112233668899885  


Q ss_pred             CCceeEEEeeCce----EEEEeccc
Q 014302          401 QGPLLSVCWSSGF----CCTYPLIF  421 (427)
Q Consensus       401 ~g~~l~v~~~~g~----i~~~~~~~  421 (427)
                       +.+|++|..||.    |.+|+|--
T Consensus       419 -~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          419 -KLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             -EEEEEEECSSSSSCCEEEEEECCC
T ss_pred             -EEEEEEcccCCCCccEEEEEECCC
Confidence             789999999997    99998854

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.90  E-value=7.8e-22  Score=189.00  Aligned_cols=216  Identities=12%  Similarity=0.203  Sum_probs=153.1

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCc-----ceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEecc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKD-----ACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~-----~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~  173 (427)
                      .|++++|+|++. +|++|+.||+|+||++......     .......|...|.+++|+|++..+|+++ .++.|++||+.
T Consensus       183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            799999999998 9999999999999999874221     1234457899999999999665777766 45999999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC-EEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD-YFF  252 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~-~l~  252 (427)
                      ....                                 ..               ....+..|...+.+++|+|+++ +|+
T Consensus       263 ~~~~---------------------------------~~---------------~~~~~~~~~~~v~~i~~~p~~~~~l~  294 (430)
T 2xyi_A          263 NNNT---------------------------------SK---------------PSHTVDAHTAEVNCLSFNPYSEFILA  294 (430)
T ss_dssp             CSCS---------------------------------SS---------------CSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             CCCC---------------------------------Cc---------------ceeEeecCCCCeEEEEeCCCCCCEEE
Confidence            1000                                 00               0112345677899999999998 577


Q ss_pred             EEecCCcEEEEEcCCCCc--cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccc-ccccccccee-
Q 014302          253 AAKFDGTFYLWETNTWTS--EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL-LPVDLPDIVS-  328 (427)
Q Consensus       253 ~~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~-  328 (427)
                      +++.||.|++||+++...  ..+..|...|.+++|+|+++.++++++.++.+.+|++........... .......... 
T Consensus       295 tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  374 (430)
T 2xyi_A          295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH  374 (430)
T ss_dssp             EEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC
T ss_pred             EEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc
Confidence            999999999999998543  334478999999999999975444555666899998876321100000 0000000111 


Q ss_pred             eccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccC
Q 014302          329 LTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      ..+...|.+++|+|+++ +|++   ++.|   +.|+||++...
T Consensus       375 ~~h~~~v~~~~~~p~~~~~l~s---~s~d---g~i~iw~~~~~  411 (430)
T 2xyi_A          375 GGHTAKISDFSWNPNEPWIICS---VSED---NIMQVWQMAEN  411 (430)
T ss_dssp             CCCSSCEEEEEECSSSTTEEEE---EETT---SEEEEEEECHH
T ss_pred             CCCCCCceEEEECCCCCCEEEE---EECC---CCEEEeEcccc
Confidence            12445799999999999 6666   4555   67999999764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=8.7e-22  Score=180.18  Aligned_cols=219  Identities=17%  Similarity=0.302  Sum_probs=165.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      .|++++|+|++++||+|+.|++|+||++..+  +......+|...+.++++  ++ .++++++ ++.+++|+....    
T Consensus        69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~--~~~~~~~~h~~~~~~~~~--~~-~~l~s~~~~~~~~~~~~~~~----  139 (318)
T 4ggc_A           69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ--KRLRNMTSHSARVGSLSW--NS-YILSSGSRSGHIHHHDVRVA----  139 (318)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTT--EEEEEEECCSSCEEEEEE--ET-TEEEEEETTSEEEEEETTSS----
T ss_pred             eEEEEEECCCCCEEEEEECCCcEEEeecCCc--eeEEEecCccceEEEeec--CC-CEEEEEecCCceEeeecCCC----
Confidence            6999999999999999999999999999887  555666778887776655  45 4666665 488888987611    


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc---------------------eEEeccCC
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT---------------------PIRRGFGG  238 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~---------------------~~~~~~~~  238 (427)
                                          ...+..+..| ...+..+.|+++++++.++.                     ....+.+.
T Consensus       140 --------------------~~~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  198 (318)
T 4ggc_A          140 --------------------EHHVATLSGH-SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA  198 (318)
T ss_dssp             --------------------SCEEEEEECC-SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSC
T ss_pred             --------------------ceeEEEEcCc-cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCc
Confidence                                1223334444 67788888888888754321                     12225577


Q ss_pred             eEEEEEccCCCEEE---EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEc-CCceeeeeeeCCCCC--
Q 014302          239 LSILKWSPTGDYFF---AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPP--  312 (427)
Q Consensus       239 v~~~~~sp~g~~l~---~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~-~~~~i~~~~~~~~~~--  312 (427)
                      +..++++|++..++   +++.++.|++||.+.........+...+..++|+|++..+++++. .++.+++|++.+...  
T Consensus       199 v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~  278 (318)
T 4ggc_A          199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA  278 (318)
T ss_dssp             EEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred             eEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEE
Confidence            89999999887544   567789999999998887766778889999999999999887653 567899998876421  


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      .+.+              |.+.|++|+|+|||++||+   ++.|   |+|+|||+..
T Consensus       279 ~l~g--------------H~~~V~~l~~spdg~~l~S---~s~D---~~v~iWd~~~  315 (318)
T 4ggc_A          279 ELKG--------------HTSRVLSLTMSPDGATVAS---AAAD---ETLRLWRCFE  315 (318)
T ss_dssp             EECC--------------CSSCEEEEEECTTSSCEEE---EETT---TEEEEECCSC
T ss_pred             EEcC--------------CCCCEEEEEEcCCCCEEEE---EecC---CeEEEEECCC
Confidence            2222              3458999999999999999   6666   7799999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.89  E-value=8.9e-22  Score=186.45  Aligned_cols=261  Identities=12%  Similarity=0.069  Sum_probs=155.7

Q ss_pred             CceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCC--ceEEEe-cCCeEEEEeccCC
Q 014302          100 VDLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGG--RSLSVG-CKGGICIWAPSYP  175 (427)
Q Consensus       100 ~~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~--~~la~g-~~~~i~iw~~~~~  175 (427)
                      ..|++++|+| ++.+|++++.|+.|++||+...  .. .....+...+.++.|+|.+.  .+++++ .++.|++|++.  
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--  174 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL--QT-ADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK--  174 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTSEEEEEETTTT--EE-EEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS--
T ss_pred             CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC--cc-ceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC--
Confidence            3899999999 7779999999999999999876  22 23334677899999999653  255554 56999999997  


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-cccCce-----------------------
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-PGLGTP-----------------------  231 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~~-----------------------  231 (427)
                             .+                .....+..+ ...|.+++|+|+++. ++++..                       
T Consensus       175 -------~~----------------~~~~~~~~~-~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~  230 (408)
T 4a11_B          175 -------SG----------------SCSHILQGH-RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN  230 (408)
T ss_dssp             -------SS----------------CCCEEECCC-CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred             -------Cc----------------ceeeeecCC-CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence                   11                223334444 778999999999985 432210                       


Q ss_pred             ----------EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc------cCCCCeeEEEECCCCCEEEEE
Q 014302          232 ----------IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       232 ----------~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~------~~~~~v~~v~~spdg~~l~~~  295 (427)
                                ...|...|.+++|+|++++|++++.|+.|++||+++++.....      .....+........+..++++
T Consensus       231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
T 4a11_B          231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV  310 (408)
T ss_dssp             TCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred             cccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEE
Confidence                      0346678999999999999999999999999999987753221      111112222222334445555


Q ss_pred             EcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          296 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       296 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      +. ++.+.+|++......            .....+.+.|.+++|+|++++|++   ++.|   |.|++||+.+.+.+..
T Consensus       311 ~~-~~~i~v~d~~~~~~~------------~~~~~~~~~v~~~~~s~~~~~l~s---~~~d---g~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          311 PY-GSTIAVYTVYSGEQI------------TMLKGHYKTVDCCVFQSNFQELYS---GSRD---CNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EE-TTEEEEEETTTCCEE------------EEECCCSSCEEEEEEETTTTEEEE---EETT---SCEEEEEECC------
T ss_pred             ec-CCEEEEEECcCCcce------------eeeccCCCeEEEEEEcCCCCEEEE---ECCC---CeEEEEeCCCCCccCC
Confidence            44 458888887664210            011124458999999999999998   5556   6699999998765522


Q ss_pred             eeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          376 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      ....          .....+.+.  ....++.+..+|.+.+|+..
T Consensus       372 ~~~~----------~~~~~~~~~--~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          372 DDET----------TTKSQLNPA--FEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             ---------------------------------------------
T ss_pred             CCce----------Eeccccccc--cceeecccCccCceeecCCc
Confidence            1110          011122222  23345566688999998765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=5.9e-21  Score=180.24  Aligned_cols=228  Identities=14%  Similarity=0.113  Sum_probs=167.3

Q ss_pred             ceeeeEEcCCCCEE-EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~l-at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .+.+++|+|+|++| ++++.|++|++||+..+  +....... ...+.+++|+|+++.+++++.+ +.|++||+.     
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~--~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~-----  104 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPA-GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-----  104 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETT-----
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCCC--eEEEEEEC-CCCccceEECCCCCEEEEEECCCCEEEEEECC-----
Confidence            58999999999976 66778999999999876  33333333 3389999999999666666655 899999997     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-cC--------------ceEE--eccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-LG--------------TPIR--RGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~--------------~~~~--~~~~~v~~  241 (427)
                          ++                .....+..  ...+.+++|+|+|+.+. .+              ..+.  .....+..
T Consensus       105 ----~~----------------~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~  162 (391)
T 1l0q_A          105 ----SN----------------TVAGTVKT--GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG  162 (391)
T ss_dssp             ----TT----------------EEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred             ----CC----------------eEEEEEeC--CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcce
Confidence                11                22232332  44678999999998642 11              1111  12356789


Q ss_pred             EEEccCCCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEc--CCceeeeeeeCCCCCCccccc
Q 014302          242 LKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA--GSLTLGSIHFASKPPSLDAHL  318 (427)
Q Consensus       242 ~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~--~~~~i~~~~~~~~~~~~~~~~  318 (427)
                      ++|+|++++|+ +++.++.|++||+++++......+...+.+++|+|+|++|++++.  .++.+++|++.....      
T Consensus       163 ~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~------  236 (391)
T 1l0q_A          163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI------  236 (391)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE------
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE------
Confidence            99999999885 777899999999998877666667778999999999999998875  556888888765311      


Q ss_pred             cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                             ...+..+..+.+++|+|+|++|+++  ++.+   +.|++||+.+++++...
T Consensus       237 -------~~~~~~~~~~~~~~~s~dg~~l~~s--~~~d---~~v~v~d~~~~~~~~~~  282 (391)
T 1l0q_A          237 -------TARIPVGPDPAGIAVTPDGKKVYVA--LSFX---NTVSVIDTATNTITATM  282 (391)
T ss_dssp             -------EEEEECCSSEEEEEECTTSSEEEEE--ETTT---TEEEEEETTTTEEEEEE
T ss_pred             -------EEEEecCCCccEEEEccCCCEEEEE--cCCC---CEEEEEECCCCcEEEEE
Confidence                   1122233467899999999999664  4555   67999999988776544

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.89  E-value=1.3e-21  Score=180.86  Aligned_cols=228  Identities=14%  Similarity=0.251  Sum_probs=156.0

Q ss_pred             ceeeeEEcC--CCCEEEEEeCCCeEEEEEccCCCC-------cceeeccCCcCCeeEEEEccC--CCceEEEecCCeEEE
Q 014302          101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSGK-------DACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICI  169 (427)
Q Consensus       101 ~V~~l~~sp--~g~~lat~~~d~~v~vwd~~~~~~-------~~~~~~~~~~~~v~~l~~sp~--~~~~la~g~~~~i~i  169 (427)
                      .|++++|+|  ++++|++++.|++|+|||+.....       ........|...|.+++|+|+  +..+++++.++.|++
T Consensus        59 ~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i  138 (351)
T 3f3f_A           59 SIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRL  138 (351)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEE
T ss_pred             cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEE
Confidence            799999999  699999999999999999987621       234455679999999999999  844555556799999


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC--
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT--  247 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~--  247 (427)
                      ||+.....                         ...+..  ...+..+.+.+           ..+...+.+++|+|+  
T Consensus       139 wd~~~~~~-------------------------~~~~~~--~~~~~~~~~~~-----------~~~~~~~~~~~~~p~~~  180 (351)
T 3f3f_A          139 YDALEPSD-------------------------LRSWTL--TSEMKVLSIPP-----------ANHLQSDFCLSWCPSRF  180 (351)
T ss_dssp             EECSSTTC-------------------------TTCCEE--EEEEESCSCCC-----------SSCSCCCEEEEECCCSS
T ss_pred             ecCCChHH-------------------------hccccc--ccccccccccc-----------CCcccceeEEEeccCCC
Confidence            99872111                         000000  00111111111           125567899999997  


Q ss_pred             -CCEEEEEecCCcEEEEEcCCCCc---cccccCCCCeeEEEECCCC----CEEEEEEcCCceeeeeeeCCCCCCccccc-
Q 014302          248 -GDYFFAAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEG----RMILLAFAGSLTLGSIHFASKPPSLDAHL-  318 (427)
Q Consensus       248 -g~~l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~v~~spdg----~~l~~~~~~~~~i~~~~~~~~~~~~~~~~-  318 (427)
                       +.+|++++.++.+.+|+....+.   ..+..|...|.+++|+|++    ++|+++ +.++.+++|++........... 
T Consensus       181 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~  259 (351)
T 3f3f_A          181 SPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATG-CKDGRIRIFKITEKLSPLASEES  259 (351)
T ss_dssp             SCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEE-ETTSCEEEEEEEECC--------
T ss_pred             CCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEE-cCCCeEEEEeCCCCcCccccCCc
Confidence             89999999999998888776664   2334789999999999998    677765 5556899998876321110000 


Q ss_pred             -----------------------------cccc---cccceee-ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEE
Q 014302          319 -----------------------------LPVD---LPDIVSL-TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY  365 (427)
Q Consensus       319 -----------------------------~~~~---~~~~~~~-~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vw  365 (427)
                                                   ....   ......+ .+.+.|++++|+|++++||+   ++.|   |.|+||
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s---~~~d---g~v~iw  333 (351)
T 3f3f_A          260 LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS---AGDD---GKVRLW  333 (351)
T ss_dssp             -------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE---EETT---SCEEEE
T ss_pred             ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE---ecCC---CcEEEE
Confidence                                         0000   0011112 24568999999999999999   5556   669999


Q ss_pred             EeccCceE
Q 014302          366 DARRTPLI  373 (427)
Q Consensus       366 d~~~~~~~  373 (427)
                      ++.++..+
T Consensus       334 ~~~~~~~~  341 (351)
T 3f3f_A          334 KATYSNEF  341 (351)
T ss_dssp             EECTTSCE
T ss_pred             ecCcCcch
Confidence            99887644

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.89  E-value=4.8e-21  Score=172.59  Aligned_cols=263  Identities=13%  Similarity=0.052  Sum_probs=163.7

Q ss_pred             ceeeeEEcCCCC---EEEEEeCCCeEEEEEccCC-CCcceeeccCCcCCeeEEEEccCCCc-------------------
Q 014302          101 DLQGVSWHQHKH---IVAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGR-------------------  157 (427)
Q Consensus       101 ~V~~l~~sp~g~---~lat~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~-------------------  157 (427)
                      +|.++-|-..|-   .+++++ ..+|++|+.... ..+.....+.|..+|..+.+.||...                   
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            778888866553   566665 569999998876 22334444455555555555544333                   


Q ss_pred             ---------eEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeeh-hcccCCCceeeeEeCCCCCCcc
Q 014302          158 ---------SLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQITALSWGPDGRFPG  227 (427)
Q Consensus       158 ---------~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~l~  227 (427)
                               .+++++ ..+.+|.+.         .+                +.+.. ..+| ...|..++++|+|+.+.
T Consensus       120 spd~~~~~~~l~s~g-~~~~v~~l~---------~g----------------~lv~ss~~g~-d~~V~~~~~s~dG~~~~  172 (356)
T 2w18_A          120 SSDDESEKQVLLKSG-NIKAVLGLT---------KR----------------RLVSSSGTLS-DQQVEVMTFAEDGGGKE  172 (356)
T ss_dssp             ------CCEEEEEEE-EEEEEEEET---------TT----------------EEEEEESSST-TCEEEEEEECTTSCEEE
T ss_pred             CCCccccccEEEeCC-CeEEEEecC---------CC----------------cEEEecccCC-CCcEEEEEECCCCceee
Confidence                     333332 224455553         11                22222 2333 88899999999998776


Q ss_pred             cCceEEeccCCeEEEEEcc---CCCEEEEEecCCcEEEEEcCCCCccccc-cC---CCCeeEEEECCCCCEEEEEE----
Q 014302          228 LGTPIRRGFGGLSILKWSP---TGDYFFAAKFDGTFYLWETNTWTSEPWS-ST---SGFVTGATWDPEGRMILLAF----  296 (427)
Q Consensus       228 ~~~~~~~~~~~v~~~~~sp---~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~---~~~v~~v~~spdg~~l~~~~----  296 (427)
                         .+..|...++.++|+|   ++.+|++++.|++|+|||++++++.... .|   ...+.+++|+|+|+++++++    
T Consensus       173 ---s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~  249 (356)
T 2w18_A          173 ---NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA  249 (356)
T ss_dssp             ---EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----
T ss_pred             ---eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC
Confidence               5667888999999999   7799999999999999999999874433 33   34577789999999886433    


Q ss_pred             -------cCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          297 -------AGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       297 -------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                             +.+.+++.|+...... +  ....+.++.    .+.+.+.+..+  ++.++|+   ++.|   ++|+|||+++
T Consensus       250 ~w~laSGs~D~tIklWd~~tgk~-l--~v~~~~~p~----Gh~~~~lsg~~--sg~~lAS---gS~D---gTIkIWDl~t  314 (356)
T 2w18_A          250 KESESLRSPVFQLIVINPKTTLS-V--GVMLYCLPP----GQAGRFLEGDV--KDHCAAA---ILTS---GTIAIWDLLL  314 (356)
T ss_dssp             --------CCEEEEEEETTTTEE-E--EEEEECCCT----TCCCCEEEEEE--ETTEEEE---EETT---SCEEEEETTT
T ss_pred             cceeeccCCCcEEEEEECCCCEE-E--EEEEeeccC----CCcceeEcccc--CCCEEEE---EcCC---CcEEEEECCC
Confidence                   3444565555443210 0  000000000    01112223333  3667777   5666   6799999999


Q ss_pred             CceEEEeeeeeeeCCCCCCCce-eEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          370 TPLISLSLIGFIRGPGDNPKPV-AFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++++..     +.+....  ++ +++|.|+   |..|+.|..|++|.+|++
T Consensus       315 Gk~l~t-----L~gH~~~--vvs~vafSPD---G~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          315 GQCTAL-----LPPVSDQ--HWSFVKWSGT---DSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CSEEEE-----ECCC--C--CCCEEEECSS---SSEEEEECTTSCEEEEEE
T ss_pred             CcEEEE-----ecCCCCC--eEEEEEECCC---CCEEEEEECCCcEEEecC
Confidence            987633     2222221  33 5799996   889999999999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.89  E-value=4.8e-21  Score=184.33  Aligned_cols=250  Identities=10%  Similarity=0.132  Sum_probs=178.3

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcccc
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~  181 (427)
                      +.+  ++++|++|++|+.|++|++||+..+  .......+|...|.+++|+  +..+++++.++.|++|++.        
T Consensus       122 ~~~--~~~~g~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~--------  187 (445)
T 2ovr_B          122 ITC--LQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE--------  187 (445)
T ss_dssp             EEE--EEEETTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT--------
T ss_pred             EEE--EEEcCCEEEEEECCCcEEEEECCCC--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC--------
Confidence            455  4556899999999999999999877  5556667899999999998  3245555567999999997        


Q ss_pred             ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc--------------Cc---eEEeccCCeEEEEE
Q 014302          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL--------------GT---PIRRGFGGLSILKW  244 (427)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--------------~~---~~~~~~~~v~~~~~  244 (427)
                       ++                .....+..| ...|.+++|++  +.+..              +.   .+..|...+.+++|
T Consensus       188 -~~----------------~~~~~~~~h-~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          188 -TG----------------ECIHTLYGH-TSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             -TT----------------EEEEEECCC-SSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred             -cC----------------cEEEEECCC-CCcEEEEEecC--CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence             11                334445555 66788888753  22221              11   24457788999998


Q ss_pred             ccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccc
Q 014302          245 SPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL  323 (427)
Q Consensus       245 sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  323 (427)
                        ++++|++++.||.|++||+++.+.. .+..|...+.+++|  +++++++++. ++.+++|++......          
T Consensus       248 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-d~~i~i~d~~~~~~~----------  312 (445)
T 2ovr_B          248 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL-DTSIRVWDVETGNCI----------  312 (445)
T ss_dssp             --CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET-TSCEEEEETTTCCEE----------
T ss_pred             --CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC-CCeEEEEECCCCCEE----------
Confidence              7889999999999999999988763 34478899999999  7888887755 458888888764210          


Q ss_pred             ccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCC-CCCCceeEEeccCCCCC
Q 014302          324 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG-DNPKPVAFSFHDKFKQG  402 (427)
Q Consensus       324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~g  402 (427)
                        .....+...+.++.+  ++++|++   ++.|   |.|++||++++..+..     +.+.. ......+++|.     +
T Consensus       313 --~~~~~~~~~v~~~~~--~~~~l~~---~~~d---g~i~vwd~~~~~~~~~-----~~~~~~~~~~v~~~~~~-----~  372 (445)
T 2ovr_B          313 --HTLTGHQSLTSGMEL--KDNILVS---GNAD---STVKIWDIKTGQCLQT-----LQGPNKHQSAVTCLQFN-----K  372 (445)
T ss_dssp             --EEECCCCSCEEEEEE--ETTEEEE---EETT---SCEEEEETTTCCEEEE-----ECSTTSCSSCEEEEEEC-----S
T ss_pred             --EEEcCCcccEEEEEE--eCCEEEE---EeCC---CeEEEEECCCCcEEEE-----EccCCCCCCCEEEEEEC-----C
Confidence              001112336677776  4678888   5555   6699999988776522     22221 22335678885     4


Q ss_pred             ceeEEEeeCceEEEEecc
Q 014302          403 PLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       403 ~~l~v~~~~g~i~~~~~~  420 (427)
                      ..|++|..||.|.+|++.
T Consensus       373 ~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          373 NFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             SEEEEEETTSEEEEEETT
T ss_pred             CEEEEEeCCCeEEEEECC
Confidence            579999999999999964

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.9e-22  Score=192.21  Aligned_cols=264  Identities=11%  Similarity=0.057  Sum_probs=174.0

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc-CCCceEEEecCCeEEEEeccCCCCccccccC
Q 014302          106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP-NGGRSLSVGCKGGICIWAPSYPGNAASVRSG  184 (427)
Q Consensus       106 ~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp-~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~  184 (427)
                      .|+|+++.+++++      .|+....  ....+..+|...|++++|+| ++..+++++.++.|+||++.....      +
T Consensus        34 ~f~~~~~~~~~~~------~w~~~g~--~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~------~   99 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLRGK--LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV------G   99 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCCCC--EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT------T
T ss_pred             hcCCccccccccc------cccccce--EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc------C
Confidence            4788998888765      3764332  23333377999999999999 884444444669999999871000      0


Q ss_pred             cccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------EEe------------------------
Q 014302          185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------IRR------------------------  234 (427)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------~~~------------------------  234 (427)
                                   ......  +...+...|.+++|+|++++++++..      ...                        
T Consensus       100 -------------~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~  164 (437)
T 3gre_A          100 -------------EVYSSS--LTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN  164 (437)
T ss_dssp             -------------CCCSCS--EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred             -------------ccccee--eeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence                         000011  11124788999999999988654421      000                        


Q ss_pred             --ccCCeEEEE--EccCCCEEEEEecCCcEEEEEcCCCCcccc-cc--CCCCeeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302          235 --GFGGLSILK--WSPTGDYFFAAKFDGTFYLWETNTWTSEPW-SS--TSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  307 (427)
Q Consensus       235 --~~~~v~~~~--~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-~~--~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~  307 (427)
                        +...+.++.  +++++.+|++++.|+.|++||+++.+.... ..  |...|.+++|+|++++|++++.+ +.+++|++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-g~i~iwd~  243 (437)
T 3gre_A          165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR-GIIDIWDI  243 (437)
T ss_dssp             GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT-SCEEEEET
T ss_pred             cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC-CeEEEEEc
Confidence              223344444  557899999999999999999998887433 34  78999999999999999987554 58888887


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEEC----CCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee----
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD----ASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG----  379 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s----p~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~----  379 (427)
                      .......           .....+...|.+++|+    |++++|++   ++.|   |+|++||++++.++......    
T Consensus       244 ~~~~~~~-----------~~~~~~~~~v~~~~~~~~~s~~~~~l~s---~~~d---g~i~iwd~~~~~~~~~~~~~~~~~  306 (437)
T 3gre_A          244 RFNVLIR-----------SWSFGDHAPITHVEVCQFYGKNSVIVVG---GSSK---TFLTIWNFVKGHCQYAFINSDEQP  306 (437)
T ss_dssp             TTTEEEE-----------EEBCTTCEEEEEEEECTTTCTTEEEEEE---ESTT---EEEEEEETTTTEEEEEEESSSSCC
T ss_pred             CCccEEE-----------EEecCCCCceEEEEeccccCCCccEEEE---EcCC---CcEEEEEcCCCcEEEEEEcCCCCC
Confidence            6531100           0011234478999665    56778888   6777   88999999987765332100    


Q ss_pred             ----e-----------eeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          380 ----F-----------IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       380 ----~-----------~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                          +           +.+........+++|.+    +.+|++|..||.|.+|++.
T Consensus       307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~~wd~~  358 (437)
T 3gre_A          307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVSN----DKILLTDEATSSIVMFSLN  358 (437)
T ss_dssp             CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEET----TEEEEEEGGGTEEEEEETT
T ss_pred             ccceecccccccccceecccccCCceEEEEECC----ceEEEecCCCCeEEEEECC
Confidence                0           00100112244667762    5688999899999999974

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.88  E-value=1.1e-20  Score=180.91  Aligned_cols=222  Identities=10%  Similarity=0.022  Sum_probs=166.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .|.+++|+|+++++++++.|+.|++||+...  ........|...+.+++|+|++..+++++ .++.|.+||+.      
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~------  242 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTL--AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK------  242 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTC--CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT------
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCc--eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC------
Confidence            7899999999999999999999999999876  34444456888999999999996666676 45999999987      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------eE----------Eec
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------PI----------RRG  235 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------~~----------~~~  235 (427)
                         ++                .....+..  ...+.+++|+|+|+.+..+.              .+          ..+
T Consensus       243 ---~~----------------~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~  301 (433)
T 3bws_A          243 ---TK----------------LEIRKTDK--IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP  301 (433)
T ss_dssp             ---TT----------------EEEEECCC--CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE
T ss_pred             ---CC----------------cEEEEecC--CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC
Confidence               11                22232332  34588999999997754332              11          113


Q ss_pred             cCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC--------------c
Q 014302          236 FGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--------------L  300 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~--------------~  300 (427)
                      ...+..++|+|+++.++ +++.++.|++||+.+++......+...+.+++|+|+|++++++....              +
T Consensus       302 ~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg  381 (433)
T 3bws_A          302 PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLG  381 (433)
T ss_dssp             EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCC
T ss_pred             CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccce
Confidence            45788899999998765 66889999999999877655556778899999999999998877653              4


Q ss_pred             eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          301 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      .+++|++.+...             ...+..+..+.+++|+|+|++|+++  +..|   +.|++|++..
T Consensus       382 ~v~~~d~~~~~~-------------~~~~~~~~~~~~~~~s~dg~~l~~~--~~~d---~~i~v~~~~~  432 (433)
T 3bws_A          382 KVYVIDTTTDTV-------------KEFWEAGNQPTGLDVSPDNRYLVIS--DFLD---HQIRVYRRDG  432 (433)
T ss_dssp             EEEEEETTTTEE-------------EEEEECSSSEEEEEECTTSCEEEEE--ETTT---TEEEEEEETT
T ss_pred             EEEEEECCCCcE-------------EEEecCCCCCceEEEcCCCCEEEEE--ECCC---CeEEEEEecC
Confidence            777777654310             1122234578999999999999885  3334   6799999863

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.88  E-value=6.2e-20  Score=174.80  Aligned_cols=226  Identities=15%  Similarity=0.175  Sum_probs=158.1

Q ss_pred             CCEEEEEeCC------CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCC---eEEEEeccCCCCcccc
Q 014302          111 KHIVAFISGS------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---GICIWAPSYPGNAASV  181 (427)
Q Consensus       111 g~~lat~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~---~i~iw~~~~~~~~~~~  181 (427)
                      +.+|++++.+      ++|++||++..   .......|...|.+++|+|||+.++.++.++   .|++||+.        
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~---~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~--------  211 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGY---NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA--------  211 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSC---SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--------
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCC---CCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC--------
Confidence            6677766554      79999999754   2333446788999999999995555555443   89999987        


Q ss_pred             ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCc-
Q 014302          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGT-  259 (427)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~-  259 (427)
                       ++              +  ..                           .+..+...+.+++|+|||++|+ +++.++. 
T Consensus       212 -tg--------------~--~~---------------------------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~  247 (415)
T 2hqs_A          212 -NG--------------A--VR---------------------------QVASFPRHNGAPAFSPDGSKLAFALSKTGSL  247 (415)
T ss_dssp             -TC--------------C--EE---------------------------EEECCSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             -CC--------------c--EE---------------------------EeecCCCcccCEEEcCCCCEEEEEEecCCCc
Confidence             11              1  00                           1222445688999999999888 6666665 


Q ss_pred             -EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCCccccccccccccceeeccCCcee
Q 014302          260 -FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE  336 (427)
Q Consensus       260 -v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  336 (427)
                       |++||+.+++...+..+...+.+++|+|||++|++++..++  .++.|++......             ....+...+.
T Consensus       248 ~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-------------~l~~~~~~~~  314 (415)
T 2hqs_A          248 NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-------------RITWEGSQNQ  314 (415)
T ss_dssp             EEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-------------ECCCSSSEEE
T ss_pred             eEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-------------EEecCCCccc
Confidence             99999998887666678889999999999999998876554  5666666553210             0011223678


Q ss_pred             EEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc---e
Q 014302          337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG---F  413 (427)
Q Consensus       337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g---~  413 (427)
                      +++|+|||++|+++.....+   ..|++||+.++.+..+.      ...   ...+++|.|+   |..|+++..++   .
T Consensus       315 ~~~~spdG~~l~~~~~~~g~---~~i~~~d~~~~~~~~l~------~~~---~~~~~~~spd---g~~l~~~s~~~~~~~  379 (415)
T 2hqs_A          315 DADVSSDGKFMVMVSSNGGQ---QHIAKQDLATGGVQVLS------STF---LDETPSLAPN---GTMVIYSSSQGMGSV  379 (415)
T ss_dssp             EEEECTTSSEEEEEEECSSC---EEEEEEETTTCCEEECC------CSS---SCEEEEECTT---SSEEEEEEEETTEEE
T ss_pred             CeEECCCCCEEEEEECcCCc---eEEEEEECCCCCEEEec------CCC---CcCCeEEcCC---CCEEEEEEcCCCccE
Confidence            99999999999986443323   67999999988765322      111   3568889986   66666666655   6


Q ss_pred             EEEEec
Q 014302          414 CCTYPL  419 (427)
Q Consensus       414 i~~~~~  419 (427)
                      |.+|++
T Consensus       380 l~~~d~  385 (415)
T 2hqs_A          380 LNLVST  385 (415)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            777764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=4.8e-21  Score=196.26  Aligned_cols=219  Identities=16%  Similarity=0.235  Sum_probs=150.9

Q ss_pred             ceeeeEEcCC--CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccC--CCceEEEecCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPN--GGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~--g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~--~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      .|++++|+|+  +++|++|+.||+|++||+..+..........|...|++++|+|+  +..+++++.++.|++|++....
T Consensus        55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence            7999999998  89999999999999999988733355566779999999999999  7445555566999999997110


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                      .                       .....+..+ ...|.+++|+|.....            .......+++++|++++.
T Consensus       135 ~-----------------------~~~~~~~~~-~~~v~~l~~~p~~~~~------------~~~~~~~~d~~~l~sgs~  178 (753)
T 3jro_A          135 T-----------------------TSPIIIDAH-AIGVNSASWAPATIEE------------DGEHNGTKESRKFVTGGA  178 (753)
T ss_dssp             C-----------------------CCCEEEECC-SSCEEEEEECCCC---------------------CGGGCCEEEEET
T ss_pred             C-----------------------cceeEeecC-CCceEEEEecCccccc------------ccccccCCCCCEEEEEEC
Confidence            0                       001111122 3334444444421000            000111337999999999


Q ss_pred             CCcEEEEEcCCCCc-----cccccCCCCeeEEEECCC---CCEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee
Q 014302          257 DGTFYLWETNTWTS-----EPWSSTSGFVTGATWDPE---GRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS  328 (427)
Q Consensus       257 dg~v~iwd~~~~~~-----~~~~~~~~~v~~v~~spd---g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      ||.|++||+++...     ..+..|...|.+++|+|+   ++++++++ .++.+++|++...........       ...
T Consensus       179 dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~-------~~~  250 (753)
T 3jro_A          179 DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS-QDRTCIIWTQDNEQGPWKKTL-------LKE  250 (753)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE-SSSCEEEEEESSSSSCCBCCB-------SSS
T ss_pred             CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe-cCCEEEEecCCCCCCcceeEE-------ecc
Confidence            99999999988753     223478999999999999   88888765 555888998877421110000       111


Q ss_pred             eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ..+.+.|.+++|+|+|++|++   ++.|   |.|++|++..
T Consensus       251 ~~~~~~v~~l~~spdg~~l~s---~s~D---g~I~vwd~~~  285 (753)
T 3jro_A          251 EKFPDVLWRASWSLSGNVLAL---SGGD---NKVTLWKENL  285 (753)
T ss_dssp             SCCSSCCCCEEECTTTCCEEE---ECSS---SCEECCBCCS
T ss_pred             CCCCCceEEEEEcCCCCEEEE---EcCC---CEEEEEecCC
Confidence            224458999999999999998   5666   6699999974

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.86  E-value=2.1e-19  Score=171.11  Aligned_cols=219  Identities=11%  Similarity=0.146  Sum_probs=153.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCC---eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-C--CeEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISGST---QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K--GGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~--~~i~iw~~~~  174 (427)
                      .|.+++|+|+|++||+++.++   .|++||+.++  ... ....|...+.+++|+|||+.++.++. +  ..|.+|++. 
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg--~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~-  255 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-  255 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC--cEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC-
Confidence            789999999999999999875   9999999876  232 34467778999999999955554554 3  348888886 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                              ++              .  . .                          .+..+...+.+++|+|||++|+++
T Consensus       256 --------~~--------------~--~-~--------------------------~l~~~~~~~~~~~~spdg~~l~~~  284 (415)
T 2hqs_A          256 --------SG--------------Q--I-R--------------------------QVTDGRSNNTEPTWFPDSQNLAFT  284 (415)
T ss_dssp             --------TC--------------C--E-E--------------------------ECCCCSSCEEEEEECTTSSEEEEE
T ss_pred             --------CC--------------C--E-E--------------------------eCcCCCCcccceEECCCCCEEEEE
Confidence                    11              0  0 0                          111234567889999999999976


Q ss_pred             ec-CC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC--ceeeeeeeCCCCCCccccccccccccceee
Q 014302          255 KF-DG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       255 ~~-dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      +. ++  .|++||+.+++...+..+...+.+++|+|||++|++++.++  ..+++|++.....              ..+
T Consensus       285 s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~--------------~~l  350 (415)
T 2hqs_A          285 SDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--------------QVL  350 (415)
T ss_dssp             ECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--------------EEC
T ss_pred             ECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE--------------EEe
Confidence            65 45  67788988877655556677899999999999999887653  4677777765421              111


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  399 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  399 (427)
                      ..+..+.+++|+|||++|+++.....   ...|++||+..+....+.      +  ......+++|.|..
T Consensus       351 ~~~~~~~~~~~spdg~~l~~~s~~~~---~~~l~~~d~~g~~~~~l~------~--~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          351 SSTFLDETPSLAPNGTMVIYSSSQGM---GSVLNLVSTDGRFKARLP------A--TDGQVKFPAWSPYL  409 (415)
T ss_dssp             CCSSSCEEEEECTTSSEEEEEEEETT---EEEEEEEETTSCCEEECC------C--SSSEEEEEEECCCC
T ss_pred             cCCCCcCCeEEcCCCCEEEEEEcCCC---ccEEEEEECCCCcEEEee------C--CCCCCcCCcccccc
Confidence            11226799999999999998644332   247999999866554322      1  11225577888764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.86  E-value=1.3e-20  Score=169.76  Aligned_cols=203  Identities=14%  Similarity=0.105  Sum_probs=122.6

Q ss_pred             ceeeeEEcCC----CCEEEEEeC--------------------CCeEEEEEccCCCCcceeeccCCcCCeeEEEEcc---
Q 014302          101 DLQGVSWHQH----KHIVAFISG--------------------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRP---  153 (427)
Q Consensus       101 ~V~~l~~sp~----g~~lat~~~--------------------d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp---  153 (427)
                      .|++++|+||    ++++++++.                    |+.|++|++...+ ........|...++.++|+|   
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG-~~~~s~~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG-GGKENQFLMPPEETILTFAEVQG  191 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTS-CEEEEEEECCCSSCEEEEEEEET
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCC-ceeeeeccCCCceeeEEeeccCC
Confidence            8999999999    888887653                    7888888885542 23334446777788888888   


Q ss_pred             CCCceEEE-ecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccC--CCceeeeEeCCCCCCcccCc
Q 014302          154 NGGRSLSV-GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--GEQITALSWGPDGRFPGLGT  230 (427)
Q Consensus       154 ~~~~~la~-g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~  230 (427)
                      ++ .+|++ +.|++|+|||+.         ++                +++..+..+.  ...+.+++|+|+|+++.   
T Consensus       192 ~~-~~LaSgS~D~TIkIWDl~---------TG----------------k~l~tL~g~~~~v~~v~~vafSpdG~~lv---  242 (356)
T 2w18_A          192 MQ-EALLGTTIMNNIVIWNLK---------TG----------------QLLKKMHIDDSYQASVCHKAYSEMGLLFI---  242 (356)
T ss_dssp             ST-TEEEEEETTSEEEEEETT---------TC----------------CEEEEEECCC---CCCEEEEEEETTEEEE---
T ss_pred             CC-ceEEEecCCCcEEEEECC---------CC----------------cEEEEEcCCCcceeeeEEEEECCCCCEEE---
Confidence            55 45555 567999999998         22                3444444331  12344455555543322   


Q ss_pred             eEEeccCCeEEEEEc-cCCC-EEEEEecCCcEEEEEcCCCCcccc------ccCCCCeeEEEECCCCCEEEEEEcCCcee
Q 014302          231 PIRRGFGGLSILKWS-PTGD-YFFAAKFDGTFYLWETNTWTSEPW------SSTSGFVTGATWDPEGRMILLAFAGSLTL  302 (427)
Q Consensus       231 ~~~~~~~~v~~~~~s-p~g~-~l~~~~~dg~v~iwd~~~~~~~~~------~~~~~~v~~v~~spdg~~l~~~~~~~~~i  302 (427)
                                  .++ +++. .+++|+.|++|++||..+++....      .+|.....+..++  +..++++ +.++++
T Consensus       243 ------------s~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg-S~DgTI  307 (356)
T 2w18_A          243 ------------VLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI-LTSGTI  307 (356)
T ss_dssp             ------------EEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE-ETTSCE
T ss_pred             ------------EeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE-cCCCcE
Confidence                        111 1111 346889999999999988875322      1344444444443  6677765 555699


Q ss_pred             eeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          303 GSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       303 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      ++|++...+.  ++.+|..             ..+..++|||||++||+   ++.|   ++|+|||+
T Consensus       308 kIWDl~tGk~l~tL~gH~~-------------~vvs~vafSPDG~~LaS---GS~D---~TIklWd~  355 (356)
T 2w18_A          308 AIWDLLLGQCTALLPPVSD-------------QHWSFVKWSGTDSHLLA---GQKD---GNIFVYHY  355 (356)
T ss_dssp             EEEETTTCSEEEEECCC---------------CCCCEEEECSSSSEEEE---ECTT---SCEEEEEE
T ss_pred             EEEECCCCcEEEEecCCCC-------------CeEEEEEECCCCCEEEE---EECC---CcEEEecC
Confidence            9999877532  2333322             12346899999999999   7777   67999996

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=7.6e-19  Score=162.25  Aligned_cols=254  Identities=12%  Similarity=0.138  Sum_probs=163.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCC-CeEEEEEcc--CCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGS-TQVIVRDYE--DSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d-~~v~vwd~~--~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~  176 (427)
                      .+.+++|+|+|++|++++.+ +.|++|+++  .+..........+ ..+.+++|+|++..+++++. ++.|.+|++. .+
T Consensus        39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~  116 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLE-DG  116 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEE-TT
T ss_pred             CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECC-CC
Confidence            57889999999999888876 999999998  3321122222222 37899999999965666665 4789999984 10


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe-
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK-  255 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-  255 (427)
                      .                     .......+.                           ....+.+++|+|+|++|++++ 
T Consensus       117 ~---------------------~~~~~~~~~---------------------------~~~~~~~~~~s~dg~~l~~~~~  148 (343)
T 1ri6_A          117 L---------------------PVGVVDVVE---------------------------GLDGCHSANISPDNRTLWVPAL  148 (343)
T ss_dssp             E---------------------EEEEEEEEC---------------------------CCTTBCCCEECTTSSEEEEEEG
T ss_pred             c---------------------ccccccccc---------------------------CCCCceEEEECCCCCEEEEecC
Confidence            0                     001111110                           123467889999999988776 


Q ss_pred             cCCcEEEEEcCC-CCcc-----ccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee
Q 014302          256 FDGTFYLWETNT-WTSE-----PWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS  328 (427)
Q Consensus       256 ~dg~v~iwd~~~-~~~~-----~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      .++.|++||+.+ ++..     ... .....+..++|+|+|++++++...++.+.+|++......+........++.  .
T Consensus       149 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~--~  226 (343)
T 1ri6_A          149 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE--N  226 (343)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT--T
T ss_pred             CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc--c
Confidence            899999999987 4432     122 334578899999999998887767778888888643221110000000000  0


Q ss_pred             eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec--cCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeE
Q 014302          329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLS  406 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~  406 (427)
                      ......+..++|+|+|++|+++  +..+   +.|.+|++.  ++....+   ..+....   .+..++|.|+   |..|.
T Consensus       227 ~~~~~~~~~i~~s~dg~~l~v~--~~~~---~~i~v~d~~~~~~~~~~~---~~~~~~~---~~~~~~~s~d---g~~l~  292 (343)
T 1ri6_A          227 FSDTRWAADIHITPDGRHLYAC--DRTA---SLITVFSVSEDGSVLSKE---GFQPTET---QPRGFNVDHS---GKYLI  292 (343)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEE--ETTT---TEEEEEEECTTSCCEEEE---EEEECSS---SCCCEEECTT---SSEEE
T ss_pred             ccccCCccceEECCCCCEEEEE--ecCC---CEEEEEEEcCCCCceEEe---eeecCCC---ccceEEECCC---CCEEE
Confidence            0112356789999999999875  3334   569999997  3332211   1222211   2558889886   66666


Q ss_pred             EEe-eCceEEEEecc
Q 014302          407 VCW-SSGFCCTYPLI  420 (427)
Q Consensus       407 v~~-~~g~i~~~~~~  420 (427)
                      ++. .++.|.+|.+-
T Consensus       293 ~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          293 AAGQKSHHISVYEIV  307 (343)
T ss_dssp             EECTTTCEEEEEEEE
T ss_pred             EecCCCCeEEEEEEc
Confidence            665 68999999653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.85  E-value=2.1e-20  Score=174.32  Aligned_cols=227  Identities=12%  Similarity=0.083  Sum_probs=148.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEE--ccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW--RPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~--sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|++++|+|++++|++++.|+.|++||+...   .......|...|.+++|  +|++..+++++.++.|++||+....  
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--  162 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSN---QAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN--  162 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS--
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCCC---CceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc--
Confidence            7999999999999999999999999999877   33335578999999999  8888445555567999999997211  


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc------------c-CceEE----eccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG------------L-GTPIR----RGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~------------~-~~~~~----~~~~~v~~  241 (427)
                                             .+..+..  ...+.++.+.++...+.            . .....    .+...+.+
T Consensus       163 -----------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  217 (368)
T 3mmy_A          163 -----------------------PMMVLQL--PERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRC  217 (368)
T ss_dssp             -----------------------CSEEEEC--SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEE
T ss_pred             -----------------------EEEEEec--CCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCce
Confidence                                   1111111  11222222222111000            0 00011    12345666


Q ss_pred             EEEccCCCE----EEEEecCCcEEEEEcCCCCc----cccccCCC------------CeeEEEECCCCCEEEEEEcCCce
Q 014302          242 LKWSPTGDY----FFAAKFDGTFYLWETNTWTS----EPWSSTSG------------FVTGATWDPEGRMILLAFAGSLT  301 (427)
Q Consensus       242 ~~~sp~g~~----l~~~~~dg~v~iwd~~~~~~----~~~~~~~~------------~v~~v~~spdg~~l~~~~~~~~~  301 (427)
                      +++.++...    +++++.||.|++||++....    ..+..|..            .|.+++|+|++++|++++.+ +.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d-g~  296 (368)
T 3mmy_A          218 VAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD-GR  296 (368)
T ss_dssp             EEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT-SC
T ss_pred             EEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC-Ce
Confidence            777666654    99999999999999988743    12223433            79999999999999887554 58


Q ss_pred             eeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          302 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       302 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      +++|++......            .....+...|.+++|+|+|++||++..++..   ..+.+|+.+....+
T Consensus       297 i~iwd~~~~~~~------------~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~---~~~~~~~~~~~~~i  353 (368)
T 3mmy_A          297 FSFWDKDARTKL------------KTSEQLDQPISACCFNHNGNIFAYASSYDWS---KGHEFYNPQKKNYI  353 (368)
T ss_dssp             EEEEETTTTEEE------------EECCCCSSCEEEEEECTTSSCEEEEECCCST---TCGGGCCTTSCCEE
T ss_pred             EEEEECCCCcEE------------EEecCCCCCceEEEECCCCCeEEEEeccccc---ccccccCCCcccee
Confidence            888887754110            0011234589999999999999996433332   33556666554444

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.85  E-value=1.9e-19  Score=167.92  Aligned_cols=249  Identities=15%  Similarity=0.107  Sum_probs=151.9

Q ss_pred             ceeeeEEcCCCCEE-EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc-
Q 014302          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA-  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~l-at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~-  178 (427)
                      .+..+++.++++.+ ++++.|++|+|||+..+  ..... ..+...|.+++|+++.   ++++.++.|++|++...... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~--~~~~~-~~~~~~v~~v~~~~~~---~~~~~~~~i~i~d~~~~~~~~  133 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKK--QDVSR-IKVDAPVKDLFLSREF---IVVSYGDVISVFKFGNPWKRI  133 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTT--EEEEE-EECSSCEEEEEECSSE---EEEEETTEEEEEESSTTCCBS
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCC--cEEEE-EECCCceEEEEEcCCE---EEEEEcCEEEEEECCCCceee
Confidence            46788899998877 45777899999999877  33322 3466789999999764   44456789999999722011 


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC-----------CCccc-CceEEeccCCeEEEEEcc
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG-----------RFPGL-GTPIRRGFGGLSILKWSP  246 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-----------~~l~~-~~~~~~~~~~v~~~~~sp  246 (427)
                      .....  ......+..    .  .+....+.....|.-.......           ..+.. ...+..|...|.+++|+|
T Consensus       134 ~~~~~--~~~~~~~s~----~--~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~  205 (355)
T 3vu4_A          134 TDDIR--FGGVCEFSN----G--LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR  205 (355)
T ss_dssp             SCCEE--EEEEEEEET----T--EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT
T ss_pred             EEecc--CCceEEEEc----c--EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC
Confidence            00000  000000000    0  0000000001111111111000           00000 234567899999999999


Q ss_pred             CCCEEEEEecCCc-EEEEEcCCCCccc-cc-c-CCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC----Cccccc
Q 014302          247 TGDYFFAAKFDGT-FYLWETNTWTSEP-WS-S-TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP----SLDAHL  318 (427)
Q Consensus       247 ~g~~l~~~~~dg~-v~iwd~~~~~~~~-~~-~-~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~----~~~~~~  318 (427)
                      +|++|++++.|++ |++||+++++... +. + |...|.+++|+|+|++|++++. ++.+++|++.....    .+....
T Consensus       206 ~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~-d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          206 KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD-KWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET-TCEEEEEESSCCSCCCSEETTTTE
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC-CCEEEEEEccCCCCccccccccee
Confidence            9999999999998 9999999988744 33 3 8999999999999999998754 55899998876421    111111


Q ss_pred             cccccccc---e--eec--cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          319 LPVDLPDI---V--SLT--GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       319 ~~~~~~~~---~--~~~--~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      .+......   .  .+.  .......++|++||++|++   ++.|   |.+++|++..+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~---~~~d---g~~~~~~~~~~  337 (355)
T 3vu4_A          285 NMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVV---WPHT---RMIETFKVVFD  337 (355)
T ss_dssp             ECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEE---ETTT---TEEEEEEEEEE
T ss_pred             eccccccccceeEEEeccCCCCCceEEEEeCCCCEEEE---EeCC---CeEEEEEEEcC
Confidence            11100000   0  000  1123477999999999999   6666   77999998653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=4.6e-19  Score=159.80  Aligned_cols=248  Identities=13%  Similarity=0.102  Sum_probs=162.8

Q ss_pred             EeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCC
Q 014302          117 ISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGP  196 (427)
Q Consensus       117 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (427)
                      ++.|++|++||+...  .. .....|...|.+++|+|++ .+|+++.++.|.+|++..+        +            
T Consensus        18 ~~~~~~i~~~d~~~~--~~-~~~~~~~~~v~~~~~spdg-~~l~~~~~~~i~~~d~~~~--------~------------   73 (297)
T 2ojh_A           18 GSMRSSIEIFNIRTR--KM-RVVWQTPELFEAPNWSPDG-KYLLLNSEGLLYRLSLAGD--------P------------   73 (297)
T ss_dssp             CCCCEEEEEEETTTT--EE-EEEEEESSCCEEEEECTTS-SEEEEEETTEEEEEESSSC--------C------------
T ss_pred             CCcceeEEEEeCCCC--ce-eeeccCCcceEeeEECCCC-CEEEEEcCCeEEEEeCCCC--------C------------
Confidence            457899999999876  22 3334578899999999999 6777777899999999710        1            


Q ss_pred             CcceeEeehhcccCCCceeeeEeCCCCCCcccCc-------eE-----------E-eccCCeEEEEEccCCCEEE-EEec
Q 014302          197 GTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-------PI-----------R-RGFGGLSILKWSPTGDYFF-AAKF  256 (427)
Q Consensus       197 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-------~~-----------~-~~~~~v~~~~~sp~g~~l~-~~~~  256 (427)
                          ........+....+.+++|+|+|++++...       .+           . .....+..++|+|++++|+ ++..
T Consensus        74 ----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  149 (297)
T 2ojh_A           74 ----SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIR  149 (297)
T ss_dssp             ----SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEE
T ss_pred             ----CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECC
Confidence                112222333346788899999998754322       00           0 1223578889999999888 7888


Q ss_pred             CCcEEEEEcCC--CCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          257 DGTFYLWETNT--WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       257 dg~v~iwd~~~--~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      ++.++||++..  .....+..+...+.+++|+|+|++|++++..++.+.+|.+.......           .....+...
T Consensus       150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~  218 (297)
T 2ojh_A          150 DQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV-----------ERITDSAYG  218 (297)
T ss_dssp             TTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE-----------EECCCCSEE
T ss_pred             CCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc-----------EEEecCCcc
Confidence            99999998643  33344456778899999999999999877656566666664221100           000112236


Q ss_pred             eeEEEECCCCCEEEEEEecCCCc-----ceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe
Q 014302          335 IEKIAWDASGERLAVSYKGGDDI-----YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW  409 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~-----~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~  409 (427)
                      +..++|+|+|++|++........     ..+.|++||+.+++...+...   .+...  ...+++|.|+   |..|+++.
T Consensus       219 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~--~~~~~~~spd---g~~l~~~~  290 (297)
T 2ojh_A          219 DWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL---FGGQG--TMNSPNWSPD---GDEFAYVR  290 (297)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE---EESTT--TSCSCCBCTT---SSEEEEEE
T ss_pred             cCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc---CCCCc--ccccceECCC---CCEEEEEE
Confidence            78999999999998864432110     125699999988776433321   11111  2346778876   66566554


Q ss_pred             eC
Q 014302          410 SS  411 (427)
Q Consensus       410 ~~  411 (427)
                      .+
T Consensus       291 ~~  292 (297)
T 2ojh_A          291 YF  292 (297)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.84  E-value=9.3e-20  Score=174.80  Aligned_cols=226  Identities=12%  Similarity=0.167  Sum_probs=156.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.+++|  ++++|++|+.||+|++||+..+  ........|...|.+++|+++  .+++++.++.|++|++....    
T Consensus       175 ~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~--~~~~~~~~h~~~v~~l~~~~~--~l~s~s~dg~i~vwd~~~~~----  244 (435)
T 1p22_A          175 SVLCLQY--DERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCEAVLHLRFNNG--MMVTCSKDRSIAVWDMASPT----  244 (435)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEEEESSSC--CEEEEECCCCSCEEEEECCTT--EEEEEETTSCEEEEECSSSS----
T ss_pred             cEEEEEE--CCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCcEEEEEEcCC--EEEEeeCCCcEEEEeCCCCC----
Confidence            7889988  7889999999999999999887  455566789999999999743  56666677999999997111    


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC--------------c---eEEeccCCeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG--------------T---PIRRGFGGLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--------------~---~~~~~~~~v~~~~  243 (427)
                                        .......+..| ...|.+++|  +++++..+              .   .+..|...+.+++
T Consensus       245 ------------------~~~~~~~~~~~-~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~  303 (435)
T 1p22_A          245 ------------------DITLRRVLVGH-RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ  303 (435)
T ss_dssp             ------------------CCEEEEEECCC-SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             ------------------CceeeeEecCC-CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEE
Confidence                              11112233344 667777777  45543322              1   2445778899988


Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  322 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  322 (427)
                      |  ++++|++++.||.|++||+++++.. .+..|...|.+++|  ++++|++++. ++.+.+|++..........   ..
T Consensus       304 ~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~---~~  375 (435)
T 1p22_A          304 Y--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY-DGKIKVWDLVAALDPRAPA---GT  375 (435)
T ss_dssp             E--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET-TSCEEEEEHHHHTSTTSCT---TT
T ss_pred             e--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC-CCcEEEEECCCCCCccccc---cc
Confidence            8  5789999999999999999988774 44479999999999  6888887754 5588888876532100000   00


Q ss_pred             cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ........+.+.|.+++|  ++++|++   ++.|   |+|++||+......
T Consensus       376 ~~~~~~~~h~~~v~~l~~--~~~~l~s---~s~D---g~i~iwd~~~~~~~  418 (435)
T 1p22_A          376 LCLRTLVEHSGRVFRLQF--DEFQIVS---SSHD---DTILIWDFLNDPAA  418 (435)
T ss_dssp             TEEEEECCCSSCCCCEEE--CSSCEEE---CCSS---SEEEEEC-------
T ss_pred             hheeeccCCCCCeEEEEe--CCCEEEE---EeCC---CEEEEEECCCCCCc
Confidence            000112235568999999  7788988   7777   78999999876543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=9.1e-19  Score=179.33  Aligned_cols=251  Identities=18%  Similarity=0.235  Sum_probs=163.6

Q ss_pred             CCceeeeEEcCCCCEEEEEeC-CC-----eEEEEEccCCCCcceeeccCCc------------------------CCeeE
Q 014302           99 EVDLQGVSWHQHKHIVAFISG-ST-----QVIVRDYEDSGKDACILTSDSQ------------------------RDVKV  148 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~~-d~-----~v~vwd~~~~~~~~~~~~~~~~------------------------~~v~~  148 (427)
                      ...|.+++|||||++|++++. |+     .|++||+.++  ....+...+.                        ..|.+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG--QTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC--CEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC--ceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            447899999999999999988 88     8999999877  3333332222                        23889


Q ss_pred             EEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc
Q 014302          149 LEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL  228 (427)
Q Consensus       149 l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  228 (427)
                      ++||||| +.|+++..+.|.+|++.....+                    .   ..                        
T Consensus       114 ~~~SpDg-~~l~~~~~~~i~~~d~~~~~~~--------------------~---~~------------------------  145 (741)
T 2ecf_A          114 YQWSPDA-QRLLFPLGGELYLYDLKQEGKA--------------------A---VR------------------------  145 (741)
T ss_dssp             CEECTTS-SEEEEEETTEEEEEESSSCSTT--------------------S---CC------------------------
T ss_pred             eEECCCC-CEEEEEeCCcEEEEECCCCCcc--------------------e---EE------------------------
Confidence            9999999 5666666699999998700000                    0   00                        


Q ss_pred             CceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-cCCC----------------CeeEEEECCCCCE
Q 014302          229 GTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSG----------------FVTGATWDPEGRM  291 (427)
Q Consensus       229 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~----------------~v~~v~~spdg~~  291 (427)
                        .+..+...+..++|||||++|+.++ ++.|++||+.+++..... .+..                .+.+++|||||++
T Consensus       146 --~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~  222 (741)
T 2ecf_A          146 --QLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA  222 (741)
T ss_dssp             --BCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC
T ss_pred             --EcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCE
Confidence              1112345688899999999999877 569999999887664443 2222                1478999999999


Q ss_pred             EEEEEcCCc--------------------------------eeeeeeeCC-CCCCccccccccccccceeeccCCceeEE
Q 014302          292 ILLAFAGSL--------------------------------TLGSIHFAS-KPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       292 l~~~~~~~~--------------------------------~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      |+++..+.+                                .+++|++.. ....      .+..    ...+...+..+
T Consensus       223 l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~------~~~~----~~~~~~~~~~~  292 (741)
T 2ecf_A          223 IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ------WIDL----GKEQDIYLARV  292 (741)
T ss_dssp             EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE------EECC----CSCSSEEEEEE
T ss_pred             EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceE------EecC----CCCcceEEEEE
Confidence            998865442                                333344333 2110      0000    00133478999


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      +| |||++|++....... ....|++||+.++.+..+.....   .........++|.|+   |.++.++..+|.+++|.
T Consensus       293 ~~-pDg~~l~~~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~---~~~~~~~~~~~~spd---g~~~~~~~~~g~~~l~~  364 (741)
T 2ecf_A          293 NW-RDPQHLSFQRQSRDQ-KKLDLVEVTLASNQQRVLAHETS---PTWVPLHNSLRFLDD---GSILWSSERTGFQHLYR  364 (741)
T ss_dssp             EE-EETTEEEEEEEETTS-SEEEEEEEETTTCCEEEEEEEEC---SSCCCCCSCCEECTT---SCEEEEECTTSSCEEEE
T ss_pred             Ee-CCCCEEEEEEecccC-CeEEEEEEECCCCceEEEEEcCC---CCcCCcCCceEECCC---CeEEEEecCCCccEEEE
Confidence            99 999999986432221 22779999999988764432211   110001235678875   66888888888877776


Q ss_pred             cc
Q 014302          419 LI  420 (427)
Q Consensus       419 ~~  420 (427)
                      +-
T Consensus       365 ~~  366 (741)
T 2ecf_A          365 ID  366 (741)
T ss_dssp             EC
T ss_pred             Ec
Confidence            53

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.83  E-value=5e-18  Score=156.32  Aligned_cols=268  Identities=9%  Similarity=-0.011  Sum_probs=167.6

Q ss_pred             EEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcccccc
Q 014302          106 SWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRS  183 (427)
Q Consensus       106 ~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~  183 (427)
                      .|.++++ .+++.+.++.|++||..++  +.......+...+ .++|+|+++.+++++. ++.|.+||..         +
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~---------~   71 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTL--EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ---------L   71 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTC--CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS---------S
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCccc--ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC---------C
Confidence            4566665 5677788999999999877  3333333444556 9999999965666665 5889999987         1


Q ss_pred             CcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC--c----e-----------EE--eccCCeEEEEE
Q 014302          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG--T----P-----------IR--RGFGGLSILKW  244 (427)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~----~-----------~~--~~~~~v~~~~~  244 (427)
                      +              .. ....+..+ ..+..+++|+|+|+++...  .    .           +.  ........++|
T Consensus        72 ~--------------~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~  135 (331)
T 3u4y_A           72 E--------------PP-KVVAIQEG-QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAI  135 (331)
T ss_dssp             S--------------SC-EEEEEEEC-SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEE
T ss_pred             C--------------ce-eEEecccC-CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEE
Confidence            1              11 01112222 3334448888888764311  0    1           11  12345688999


Q ss_pred             ccCCCEEE-EEecCCc-EEEEEcCCCCcc-----ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccc
Q 014302          245 SPTGDYFF-AAKFDGT-FYLWETNTWTSE-----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  317 (427)
Q Consensus       245 sp~g~~l~-~~~~dg~-v~iwd~~~~~~~-----~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~  317 (427)
                      +|+|++|+ +...++. |++|++......     ...........++|+|+|++++++...++.+.+|++......    
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~----  211 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI----  211 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC----
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc----
Confidence            99999777 4455688 999998754431     122445568899999999988888777778988887654210    


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe--eeeeeeCCCCCCCceeEEe
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS--LIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f  395 (427)
                            .....+..+..+..++|+|||++|+++  ...+   +.|.+||+.++++..+.  +.++............++|
T Consensus       212 ------~~~~~~~~~~~~~~~~~spdg~~l~v~--~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (331)
T 3u4y_A          212 ------TLLNAVGTNNLPGTIVVSRDGSTVYVL--TEST---VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMAL  280 (331)
T ss_dssp             ------EEEEEEECSSCCCCEEECTTSSEEEEE--CSSE---EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEE
T ss_pred             ------ceeeeccCCCCCceEEECCCCCEEEEE--EcCC---CEEEEEECCCCceeeecccccccccCCCCcccccceEE
Confidence                  001122234577899999999988775  3333   67999999988763322  2111111111111134788


Q ss_pred             ccCCCCCceeEEEe-eCceEEEEec
Q 014302          396 HDKFKQGPLLSVCW-SSGFCCTYPL  419 (427)
Q Consensus       396 ~~~~~~g~~l~v~~-~~g~i~~~~~  419 (427)
                      .|+   |..|.++. .++.|.+|++
T Consensus       281 spd---g~~l~v~~~~~~~v~v~d~  302 (331)
T 3u4y_A          281 NKT---ETKLFISANISRELKVFTI  302 (331)
T ss_dssp             CTT---SSEEEEEETTTTEEEEEET
T ss_pred             CCC---CCEEEEecCCCCcEEEEEe
Confidence            886   55565544 4679999986

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=6.4e-18  Score=156.83  Aligned_cols=265  Identities=14%  Similarity=0.147  Sum_probs=160.3

Q ss_pred             ceeeeEEcCCCCEEEEEeC---CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISG---STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~  176 (427)
                      .+..++|+|+|+ |++++.   ++.|++|++..+..........+...+..++|+|+|+.+++++ .++.+.+|++...+
T Consensus        41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g  119 (347)
T 3hfq_A           41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG  119 (347)
T ss_dssp             CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS
T ss_pred             CcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC
Confidence            457899999999 554443   6899999997652222222234566789999999995555555 34889999996111


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                      .                      ...+..+.....        .|.         .+.....+.+++|+|+|+.+++...
T Consensus       120 ~----------------------~~~~~~~~~~~~--------~p~---------~~~~~~~~~~~~~spdg~l~v~~~~  160 (347)
T 3hfq_A          120 A----------------------LTLTDTVQHSGH--------GPR---------PEQDGSHIHYTDLTPDNRLAVIDLG  160 (347)
T ss_dssp             C----------------------EEEEEEEECCCC--------CSS---------TTCSSCCEEEEEECTTSCEEEEETT
T ss_pred             C----------------------eeecceeecCCC--------CCC---------ccccCCCceEEEECCCCcEEEEeCC
Confidence            1                      111111110000        000         0012345788999999995556667


Q ss_pred             CCcEEEEEcC-CCCcccc---c-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302          257 DGTFYLWETN-TWTSEPW---S-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  331 (427)
Q Consensus       257 dg~v~iwd~~-~~~~~~~---~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (427)
                      ++.|++||+. .++....   . ........++|+|||++++++...++.+.+|++......+.........+.  ....
T Consensus       161 ~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~--~~~~  238 (347)
T 3hfq_A          161 SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPA--DYTA  238 (347)
T ss_dssp             TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCT--TCCS
T ss_pred             CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCC--CCCC
Confidence            8899999998 3433211   1 233467789999999998887777778888887753221110000000000  0111


Q ss_pred             CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC-ceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302          332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT-PLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS  410 (427)
Q Consensus       332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~  410 (427)
                      ...+..++|+|||++|+++..+  +   +.|.+|++... ...   ....+...+.  .+..++|.|+   |..|.++..
T Consensus       239 ~~~~~~i~~spdG~~l~v~~~~--~---~~v~v~~~~~~g~~~---~~~~~~~~~~--~~~~~~~spd---g~~l~v~~~  305 (347)
T 3hfq_A          239 HNGAAAIRLSHDGHFLYVSNRG--Y---NTLAVFAVTADGHLT---LIQQISTEGD--FPRDFDLDPT---EAFVVVVNQ  305 (347)
T ss_dssp             CCEEEEEEECTTSCEEEEEEET--T---TEEEEEEECGGGCEE---EEEEEECSSS--CCCEEEECTT---SSEEEEEET
T ss_pred             CCcceeEEECCCCCEEEEEeCC--C---CEEEEEEECCCCcEE---EeEEEecCCC--CcCeEEECCC---CCEEEEEEc
Confidence            1358899999999999775333  2   56999999633 221   1122222222  2568999886   666666654


Q ss_pred             -CceEEEEecc
Q 014302          411 -SGFCCTYPLI  420 (427)
Q Consensus       411 -~g~i~~~~~~  420 (427)
                       ++.|.+|.+-
T Consensus       306 ~~~~v~v~~~d  316 (347)
T 3hfq_A          306 NTDNATLYARD  316 (347)
T ss_dssp             TTTEEEEEEEC
T ss_pred             CCCcEEEEEEe
Confidence             5899999653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=8.3e-19  Score=179.07  Aligned_cols=274  Identities=14%  Similarity=0.114  Sum_probs=165.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcC---CeeEEEEccCCCceEEEecC---------CeEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGCK---------GGIC  168 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~la~g~~---------~~i~  168 (427)
                      .+.+++|+|||+++++ +.|++|++||+.++  +...+...|..   .|.+++|||||+.++++..+         +.+.
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g--~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~   94 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN--TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV   94 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC--CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCC--cEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence            3578899999998876 68999999999887  33444444543   49999999999544444432         6788


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-------------ceEEe-
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-------------TPIRR-  234 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-------------~~~~~-  234 (427)
                      +|++.         ++              ....+.....+ ...+..++|+|||+.++..             ...+. 
T Consensus        95 ~~d~~---------~~--------------~~~~l~~~~~~-~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~  150 (723)
T 1xfd_A           95 LSKIP---------HG--------------DPQSLDPPEVS-NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVV  150 (723)
T ss_dssp             EEESS---------SC--------------CCEECCCTTCC-SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEE
T ss_pred             EEECC---------CC--------------ceEeccCCccc-cccccccEECCCCCEEEEEECCeEEEEECCCCceEEEe
Confidence            99987         11              11112111111 3347889999999885522             11111 


Q ss_pred             --ccCC------------------eEEEEEccCCCEEEEEecCC----------------------------------cE
Q 014302          235 --GFGG------------------LSILKWSPTGDYFFAAKFDG----------------------------------TF  260 (427)
Q Consensus       235 --~~~~------------------v~~~~~sp~g~~l~~~~~dg----------------------------------~v  260 (427)
                        +...                  +..++|||||++|++++.++                                  .|
T Consensus       151 ~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence              1222                  26899999999999776543                                  79


Q ss_pred             EEEEcCCCCc-ccccc------CCCCeeEEEECCCCCEEEEEEcCC---ceeeeeeeCCCCCCccccccccccccceeec
Q 014302          261 YLWETNTWTS-EPWSS------TSGFVTGATWDPEGRMILLAFAGS---LTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  330 (427)
Q Consensus       261 ~iwd~~~~~~-~~~~~------~~~~v~~v~~spdg~~l~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (427)
                      ++||+.+++. ..+..      +...+..++|||||++|++.....   ..+++|++.+.....           .....
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~-----------~~~~~  299 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK-----------KHEDE  299 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE-----------EEEEE
T ss_pred             EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceE-----------EEEec
Confidence            9999988774 33322      356789999999999887665432   356666655432100           00001


Q ss_pred             cCCce----eEEEECCCCCEEEEE-EecCCC-cceeEEEEEE-eccCc---eEEEeeeeeeeCCCCCCCce-eEEeccCC
Q 014302          331 GSQGI----EKIAWDASGERLAVS-YKGGDD-IYKGLIAIYD-ARRTP---LISLSLIGFIRGPGDNPKPV-AFSFHDKF  399 (427)
Q Consensus       331 ~~~~i----~~v~~sp~g~~La~~-~~~~~d-~~~g~i~vwd-~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~f~~~~  399 (427)
                      +.+.+    ..++|+|||++|++. .....+ .....|++|| ...+.   ...++      . +.. ... .++|.|+ 
T Consensus       300 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~------~-~~~-~~~~~~~~spd-  370 (723)
T 1xfd_A          300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT------S-GDW-DVTKILAYDEK-  370 (723)
T ss_dssp             CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC------C-SSS-CEEEEEEEETT-
T ss_pred             cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee------c-CCe-EEEeeeEEcCC-
Confidence            11222    378999999988874 222110 0013577777 34444   22111      1 111 122 2578876 


Q ss_pred             CCCceeEEEeeC---ceEEEEeccccC
Q 014302          400 KQGPLLSVCWSS---GFCCTYPLIFRS  423 (427)
Q Consensus       400 ~~g~~l~v~~~~---g~i~~~~~~~~~  423 (427)
                        |..|.+...+   +.+++|.+-..+
T Consensus       371 --g~~l~~~~~~~~~~~~~l~~~~~~~  395 (723)
T 1xfd_A          371 --GNKIYFLSTEDLPRRRQLYSANTVG  395 (723)
T ss_dssp             --TTEEEEEESSSCTTCCEEEEECSST
T ss_pred             --CCEEEEEEcCCCCcceEEEEEeCCC
Confidence              5556554444   788898875543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.82  E-value=1.1e-18  Score=171.47  Aligned_cols=281  Identities=11%  Similarity=0.059  Sum_probs=175.8

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEc--cCCCCcceeeccCCcCCeeEEEEcc----CCCceEEEec--CCeEEEEe
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDY--EDSGKDACILTSDSQRDVKVLEWRP----NGGRSLSVGC--KGGICIWA  171 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~--~~~~~~~~~~~~~~~~~v~~l~~sp----~~~~~la~g~--~~~i~iw~  171 (427)
                      +.+..++|+|||++|++++.|++|++||+  .+.  ...... .+...+..++|+|    ||+ +|++++  +++|.+||
T Consensus       179 ~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~--~~~~~i-~~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D  254 (543)
T 1nir_A          179 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEP--TKVAEI-KIGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMD  254 (543)
T ss_dssp             TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--EEEEEE-ECCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEE
T ss_pred             cccceEEECCCCCEEEEECCCCeEEEEECcCCCC--cEEEEE-ecCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEe
Confidence            35889999999999999999999999999  444  222222 2455689999999    994 555543  59999999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcc----------cCCCceeeeEeCCCCCCcc--------------
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS----------QNGEQITALSWGPDGRFPG--------------  227 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~spdg~~l~--------------  227 (427)
                      ..         ++                .++..+..          +....+..+.++|++..+.              
T Consensus       255 ~~---------t~----------------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~  309 (543)
T 1nir_A          255 GE---------TL----------------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  309 (543)
T ss_dssp             TT---------TC----------------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             cc---------cc----------------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEe
Confidence            86         11                11111111          1133677888888765421              


Q ss_pred             -cCce----EEeccCCeEEEEEccCCCEEEE-EecCCcEEEEEcCCCCccccc-----cCCCCeeEEEECCC-CCEEEEE
Q 014302          228 -LGTP----IRRGFGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTSEPWS-----STSGFVTGATWDPE-GRMILLA  295 (427)
Q Consensus       228 -~~~~----~~~~~~~v~~~~~sp~g~~l~~-~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~v~~spd-g~~l~~~  295 (427)
                       ....    .-.+...+..+.|+|+|++|++ +..+++|.+||+.+++.....     .|.+....+ ++|+ |..++++
T Consensus       310 ~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~  388 (543)
T 1nir_A          310 KDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTS  388 (543)
T ss_dssp             TTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEE
T ss_pred             cCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEec
Confidence             0000    1123455778999999998875 456899999999998764333     244333333 4677 4444443


Q ss_pred             EcCCceeeeeeeCCCCCCccccccccccccceeec-cCCceeEEEECCCCCEEEEEEecCCCc-ceeEEEEEEeccCceE
Q 014302          296 FAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDI-YKGLIAIYDARRTPLI  373 (427)
Q Consensus       296 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~-~~g~i~vwd~~~~~~~  373 (427)
                      ...++++.+|++......     . ........+. +++.+..++|+|+|++|++....+.|. ..++|.|||+.+++..
T Consensus       389 ~~~d~~V~v~d~~~~~~~-----~-~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  462 (543)
T 1nir_A          389 HLGDGSISLIGTDPKNHP-----Q-YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  462 (543)
T ss_dssp             BSSSSEEEEEECCTTTCT-----T-TBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             cCCCceEEEEEeCCCCCc-----h-hcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence            335568888887762110     0 0011122233 334678899999999999942111110 0146999999998875


Q ss_pred             -EEeeeeeeeCCCC-CCCceeEEeccCCCCCce-eEEEee----CceEEEEec
Q 014302          374 -SLSLIGFIRGPGD-NPKPVAFSFHDKFKQGPL-LSVCWS----SGFCCTYPL  419 (427)
Q Consensus       374 -~~~~~~~~~~~~~-~~~~~~~~f~~~~~~g~~-l~v~~~----~g~i~~~~~  419 (427)
                       ...+.+...+..+ ...+..++|.|+   |.. +...|+    ++.|.+|+.
T Consensus       463 ~~~~~v~~~~~~~~~~~~~~~~~~~~~---g~~~~~s~~~~~~~~~~i~v~D~  512 (543)
T 1nir_A          463 YQVLPIAEWADLGEGAKRVVQPEYNKR---GDEVWFSVWNGKNDSSALVVVDD  512 (543)
T ss_dssp             CEEECHHHHHCCCSSCCEEEEEEECSS---SSEEEEEEECCTTSCCEEEEEET
T ss_pred             eEEeechhhcccCCCCCceEeccCCCC---CCEEEEEeecCCCCCCeEEEEEC
Confidence             5555554333222 335778888886   554 444553    699999873

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=5.3e-19  Score=176.04  Aligned_cols=252  Identities=13%  Similarity=0.055  Sum_probs=155.8

Q ss_pred             ceeeeEEcCCCCEEEEEeC-CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec----CCeEEEEeccC-
Q 014302          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----KGGICIWAPSY-  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~----~~~i~iw~~~~-  174 (427)
                      .|.+++|+|||++||+++. |++++||+++.+  ....+...+...+.+++|+||  ++++++.    +....||.++. 
T Consensus        23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g--~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG--ETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             CEEEEEEEETTTEEEEEEEETTEEEEEEEETT--EEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETT
T ss_pred             chheeecCCCCCeEEEEEccCCceeEEEEcCC--CcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEecc
Confidence            6899999999999999887 999999998655  344444444468999999999  5665543    25567877762 


Q ss_pred             -CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc---------------cCceEEeccCC
Q 014302          175 -PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG---------------LGTPIRRGFGG  238 (427)
Q Consensus       175 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~---------------~~~~~~~~~~~  238 (427)
                       .+...                      .   +..  ...+...+|+|||+.+.               .+...+.....
T Consensus        99 ~~g~~~----------------------~---l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~  151 (582)
T 3o4h_A           99 RPGEEQ----------------------R---LEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP  151 (582)
T ss_dssp             STTCCE----------------------E---CTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES
T ss_pred             CCCccc----------------------c---ccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC
Confidence             22111                      1   111  11223556777765421               11111111111


Q ss_pred             eEEEEEccCCCEEEEEecC----CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCC
Q 014302          239 LSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPP  312 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~  312 (427)
                      ..+++|||||++|++++.+    +.|++||+.+++...+..+...+..++|||||+.|++ +..++  .|++|++.....
T Consensus       152 ~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~-~~~~~~~~i~~~d~~~~~~  230 (582)
T 3o4h_A          152 GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG-LETAREARLVTVDPRDGSV  230 (582)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE-EECSSCEEEEEECTTTCCE
T ss_pred             CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE-ccCCCeeEEEEEcCCCCcE
Confidence            2788999999999977766    7799999998887777788888999999999999994 45555  677777665421


Q ss_pred             C-ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCce
Q 014302          313 S-LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPV  391 (427)
Q Consensus       313 ~-~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  391 (427)
                      . +.++...+     ... ........+|+|||..++++   +.+   ++++||++  ++... .+.+         ...
T Consensus       231 ~~~~~~~~~~-----~~~-~~~~~~~~~~spdg~~~~~~---~~~---g~~~l~~~--g~~~~-~~~~---------~v~  286 (582)
T 3o4h_A          231 EDLELPSKDF-----SSY-RPTAITWLGYLPDGRLAVVA---RRE---GRSAVFID--GERVE-APQG---------NHG  286 (582)
T ss_dssp             EECCCSCSHH-----HHH-CCSEEEEEEECTTSCEEEEE---EET---TEEEEEET--TEEEC-CCSS---------EEE
T ss_pred             EEccCCCcCh-----hhh-hhccccceeEcCCCcEEEEE---EcC---CcEEEEEE--CCeec-cCCC---------ceE
Confidence            1 11110000     000 00112334499999666663   333   56999999  44432 1111         133


Q ss_pred             eEEeccCCCCCceeEEEeeCc
Q 014302          392 AFSFHDKFKQGPLLSVCWSSG  412 (427)
Q Consensus       392 ~~~f~~~~~~g~~l~v~~~~g  412 (427)
                      +++|.    ++.++.++.++.
T Consensus       287 ~~~~s----dg~~l~~~s~~~  303 (582)
T 3o4h_A          287 RVVLW----RGKLVTSHTSLS  303 (582)
T ss_dssp             EEEEE----TTEEEEEEEETT
T ss_pred             EEEec----CCEEEEEEcCCC
Confidence            56665    366666666653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.80  E-value=2.3e-17  Score=153.08  Aligned_cols=253  Identities=9%  Similarity=0.021  Sum_probs=170.5

Q ss_pred             ceeeeEEcCCCCEEEEEeC-------CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEec
Q 014302          101 DLQGVSWHQHKHIVAFISG-------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAP  172 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~-------d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~  172 (427)
                      .+..++|+|+|++|++++.       ++.|.+||..+.  +..... .....+..++|+|+++.++++.. ++.|.+||.
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~-~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL--EVTQAI-HNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC--CEEEEE-EESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC--eEEEEE-ecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            5789999999998888764       568999998876  222222 22345788999999965666655 488999998


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccC--------CCceeeeEeCCCCCCccc----------------
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--------GEQITALSWGPDGRFPGL----------------  228 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~~spdg~~l~~----------------  228 (427)
                      .         ++                .....+..+.        ...+..++|+|+|+.+..                
T Consensus       119 ~---------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A          119 K---------TG----------------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             T---------TC----------------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred             C---------CC----------------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence            7         11                1111111111        112577889998875321                


Q ss_pred             CceEEe---ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-----cCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          229 GTPIRR---GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----STSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       229 ~~~~~~---~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                      +.....   +...+..++|+|+|++|++++.++.|.+||+.+++.....     .+...+..++|+|+|++++++...++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  253 (353)
T 3vgz_A          174 IKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA  253 (353)
T ss_dssp             TEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS
T ss_pred             CceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC
Confidence            111111   2344788999999999999999999999999888764322     24556788999999999988877777


Q ss_pred             eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeee
Q 014302          301 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF  380 (427)
Q Consensus       301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~  380 (427)
                      .+.+|+..+....             ..+..+ ....++|+|+|++|+++  ...+   +.|.+||+.+++.+...+.+ 
T Consensus       254 ~v~~~d~~~~~~~-------------~~~~~~-~~~~~~~s~dg~~l~v~--~~~~---~~v~~~d~~~~~~~~~~~~~-  313 (353)
T 3vgz_A          254 EVLVVDTRNGNIL-------------AKVAAP-ESLAVLFNPARNEAYVT--HRQA---GKVSVIDAKSYKVVKTFDTP-  313 (353)
T ss_dssp             EEEEEETTTCCEE-------------EEEECS-SCCCEEEETTTTEEEEE--ETTT---TEEEEEETTTTEEEEEEECC-
T ss_pred             EEEEEECCCCcEE-------------EEEEcC-CCceEEECCCCCEEEEE--ECCC---CeEEEEECCCCeEEEEEecC-
Confidence            8888887654210             001111 22579999999988775  3334   56999999988776433221 


Q ss_pred             eeCCCCCCCceeEEeccCCCCCceeEEEeeC
Q 014302          381 IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS  411 (427)
Q Consensus       381 ~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~  411 (427)
                             ..+.+++|.|+   |..|.|+..+
T Consensus       314 -------~~~~~~~~s~d---g~~l~v~~~~  334 (353)
T 3vgz_A          314 -------THPNSLALSAD---GKTLYVSVKQ  334 (353)
T ss_dssp             -------SEEEEEEECTT---SCEEEEEEEC
T ss_pred             -------CCCCeEEEcCC---CCEEEEEEcc
Confidence                   13668889886   6666666665

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=8.1e-18  Score=151.59  Aligned_cols=213  Identities=12%  Similarity=0.165  Sum_probs=143.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccC-CCCcceeeccCC-cCCeeEEEEccCCCceEEEec--CCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED-SGKDACILTSDS-QRDVKVLEWRPNGGRSLSVGC--KGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~-~~~~~~~~~~~~-~~~v~~l~~sp~~~~~la~g~--~~~i~iw~~~~~~  176 (427)
                      .|.+++|+|+|++|++++ ++.|++||+.. .  ....+...+ ...+.+++|+|++..+++++.  ++...||.++..+
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~  119 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP--SPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG  119 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSCC--SCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC--CceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence            689999999999999986 78999999987 5  333333344 467899999999954555442  2456677665211


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-cC----------------c--eEEeccC
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-LG----------------T--PIRRGFG  237 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-~~----------------~--~~~~~~~  237 (427)
                      .                     .   ...+..  ...+..++|+|||+.+. .+                .  .+..+..
T Consensus       120 ~---------------------~---~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  173 (297)
T 2ojh_A          120 G---------------------T---PRLMTK--NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEG  173 (297)
T ss_dssp             C---------------------C---CEECCS--SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSS
T ss_pred             C---------------------c---eEEeec--CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCC
Confidence            1                     1   111221  22477889999998644 11                0  0112446


Q ss_pred             CeEEEEEccCCCEEEEEe-cCCcEEEEEcCC-CC-ccccccCCCCeeEEEECCCCCEEEEEEcCC----------ceeee
Q 014302          238 GLSILKWSPTGDYFFAAK-FDGTFYLWETNT-WT-SEPWSSTSGFVTGATWDPEGRMILLAFAGS----------LTLGS  304 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~-~~-~~~~~~~~~~v~~v~~spdg~~l~~~~~~~----------~~i~~  304 (427)
                      .+.+++|+|+|++|+.++ .++.+++|++.. .. ...+..+...+..++|+|+|++|++++.++          ..+++
T Consensus       174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~  253 (297)
T 2ojh_A          174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL  253 (297)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred             ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence            789999999999888555 589999998863 22 234446677889999999999999877643          35777


Q ss_pred             eeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEe
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK  352 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~  352 (427)
                      |++.......      +    .....+...+..++|+|+|++|+++..
T Consensus       254 ~d~~~~~~~~------~----~~~~~~~~~~~~~~~spdg~~l~~~~~  291 (297)
T 2ojh_A          254 MDMDGGNVET------L----FDLFGGQGTMNSPNWSPDGDEFAYVRY  291 (297)
T ss_dssp             EETTSCSCEE------E----EEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred             EecCCCCcee------e----eccCCCCcccccceECCCCCEEEEEEe
Confidence            7765542100      0    001123447889999999999998643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.79  E-value=1.9e-17  Score=152.32  Aligned_cols=233  Identities=10%  Similarity=0.104  Sum_probs=150.2

Q ss_pred             ceeeeEEcCCCCEEEEEeC-CCeEEEEEccCCCCcc-eeeccCCcCCeeEEEEccCCCceEEEecCC----eEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISG-STQVIVRDYEDSGKDA-CILTSDSQRDVKVLEWRPNGGRSLSVGCKG----GICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~-d~~v~vwd~~~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~la~g~~~----~i~iw~~~~  174 (427)
                      .+ +++|+|+|++|++++. ++.|.+||....  .. ......+.....+++|+|+++.++ ++..+    .|.+|++. 
T Consensus        42 ~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~-  116 (331)
T 3u4y_A           42 FV-DTAITSDCSNVVVTSDFCQTLVQIETQLE--PPKVVAIQEGQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFL-  116 (331)
T ss_dssp             EE-EEEECSSSCEEEEEESTTCEEEEEECSSS--SCEEEEEEECSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETT-
T ss_pred             cc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC--ceeEEecccCCCCccceEECCCCCEEE-EecCCCCcccEEEEECC-
Confidence            45 8999999997766655 889999999876  32 333333444444599999995444 55443    89999987 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc-----CceEE----------------
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL-----GTPIR----------------  233 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-----~~~~~----------------  233 (427)
                              ++                .....+..  ......++|+|||+++..     +..+.                
T Consensus       117 --------~~----------------~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~  170 (331)
T 3u4y_A          117 --------KN----------------KFISTIPI--PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE  170 (331)
T ss_dssp             --------TT----------------EEEEEEEC--CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred             --------CC----------------CeEEEEEC--CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence                    11                22222222  334578999999885321     11011                


Q ss_pred             --eccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCc---cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302          234 --RGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  307 (427)
Q Consensus       234 --~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~---~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~  307 (427)
                        ........++|+|+|++|+ ++..++.|++||+.+++.   .........+..++|+|||++|+++...++.+.+|+.
T Consensus       171 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          171 FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence              1234578899999999777 455689999999998876   4444556778899999999998887766667888777


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      .+........ .+..+.  ........+..++|+|||++|+++.  ..+   +.|.+||+.....
T Consensus       251 ~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~spdg~~l~v~~--~~~---~~v~v~d~~~~~~  307 (331)
T 3u4y_A          251 LSGTLSFVKS-FGHGLL--IDPRPLFGANQMALNKTETKLFISA--NIS---RELKVFTISGKVV  307 (331)
T ss_dssp             TTTEEEEEEE-EECCCC--CCCGGGTTCCCEEECTTSSEEEEEE--TTT---TEEEEEETTSCEE
T ss_pred             CCCceeeecc-cccccc--cCCCCcccccceEECCCCCEEEEec--CCC---CcEEEEEecCCcc
Confidence            6542100000 000000  0000001236689999999998753  333   5699999976543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=1.2e-17  Score=159.71  Aligned_cols=223  Identities=11%  Similarity=0.038  Sum_probs=144.0

Q ss_pred             CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC---------Ccc----eeeccCCcCCeeEEEEccCCCceEE----
Q 014302           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---------KDA----CILTSDSQRDVKVLEWRPNGGRSLS----  160 (427)
Q Consensus        98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~---------~~~----~~~~~~~~~~v~~l~~sp~~~~~la----  160 (427)
                      ....++.+++++++.+|++++.|+ ++||+.....         ...    ......+...|.+++|+|++ .+|+    
T Consensus        35 ~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg-~~lav~~~  112 (434)
T 2oit_A           35 PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN-LTLSACMM  112 (434)
T ss_dssp             CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTS-CEEEEEEE
T ss_pred             CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCC-CEEEEEEe
Confidence            344689999999999999998887 8888754210         000    01112355679999999999 5555    


Q ss_pred             Eec-CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCe
Q 014302          161 VGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGL  239 (427)
Q Consensus       161 ~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v  239 (427)
                      +++ ++.|+|||+.         .+                  .. -.......+..            ...+..|...|
T Consensus       113 sgs~d~~v~iwd~~---------~~------------------~~-~~~~~~~~~~~------------~~~~~~h~~~V  152 (434)
T 2oit_A          113 SSEYGSIIAFFDVR---------TF------------------SN-EAKQQKRPFAY------------HKLLKDAGGMV  152 (434)
T ss_dssp             ETTTEEEEEEEEHH---------HH------------------HC-TTCSSCCCSEE------------EECCCSGGGSE
T ss_pred             ccCCCceEEEEEcc---------cc------------------cc-CCcCCcceeee------------eeccCCCCCce
Confidence            555 4899999987         00                  00 00000000000            01233467889


Q ss_pred             EEEEEccC-CCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC-CCccc
Q 014302          240 SILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP-PSLDA  316 (427)
Q Consensus       240 ~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~-~~~~~  316 (427)
                      .+++|+|+ +.+|++++.||+|++||+++.... ....|...+.+++|+|+|++|++++. ++.+++|+..... ..+..
T Consensus       153 ~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~-dg~v~iwd~~~~~~~~~~~  231 (434)
T 2oit_A          153 IDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQ-NGTVVQYLPTLQEKKVIPC  231 (434)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEET-TSCEEEECTTCCEEEEECC
T ss_pred             EEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcC-CCcEEEEccCCcccccccC
Confidence            99999998 788999999999999999987543 23367889999999999999998764 4477777765210 01111


Q ss_pred             cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC-cceeEEEEEEeccC
Q 014302          317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD-IYKGLIAIYDARRT  370 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d-~~~g~i~vwd~~~~  370 (427)
                      +..       ....+...|.+++|++++.++++...+... .....+++|++...
T Consensus       232 ~~~-------~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          232 PPF-------YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CTT-------CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             Ccc-------cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            100       000112378999999999888775333211 11234999999764

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.79  E-value=1.6e-17  Score=169.98  Aligned_cols=275  Identities=13%  Similarity=0.130  Sum_probs=162.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.+++|||||++|++++. +.|++||+..+..........|...+.+++||||| +.|+.+.++.|.+|++. .+....
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~~~~i~~~d~~-~g~~~~  186 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIRGRNLWVIDLA-SGRQMQ  186 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEETTEEEEEETT-TTEEEE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEeCCcEEEEecC-CCCEEE
Confidence            4789999999999999986 89999999865100222334567789999999999 66777777889999987 111000


Q ss_pred             cccCcccccccccCCCCcceeE--eehhcccCCCceeeeEeCCCCCCcccCc----------------------------
Q 014302          181 VRSGAASFLGALSRGPGTRWTL--VDFLRSQNGEQITALSWGPDGRFPGLGT----------------------------  230 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------------------  230 (427)
                      +...           .......  ...+.......+..++|+|||++++...                            
T Consensus       187 ~~~~-----------~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~  255 (741)
T 2ecf_A          187 LTAD-----------GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA  255 (741)
T ss_dssp             CCCC-----------CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred             eccC-----------CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence            0000           0000000  0000000012246788999988754321                            


Q ss_pred             --------eEE-----------------eccCCeEEEEEccCCCEEEEEec-----CCcEEEEEcCCCCccccc-cCC-C
Q 014302          231 --------PIR-----------------RGFGGLSILKWSPTGDYFFAAKF-----DGTFYLWETNTWTSEPWS-STS-G  278 (427)
Q Consensus       231 --------~~~-----------------~~~~~v~~~~~sp~g~~l~~~~~-----dg~v~iwd~~~~~~~~~~-~~~-~  278 (427)
                              .+.                 .+...+..++| |||++|++++.     +..|++||+.+++..... .+. .
T Consensus       256 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~  334 (741)
T 2ecf_A          256 AGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPT  334 (741)
T ss_dssp             TTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSS
T ss_pred             CCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCC
Confidence                    110                 12234678899 99999996553     567999999988765443 222 2


Q ss_pred             ---CeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE-EECCCCCEEEEEEecC
Q 014302          279 ---FVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI-AWDASGERLAVSYKGG  354 (427)
Q Consensus       279 ---~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v-~~sp~g~~La~~~~~~  354 (427)
                         .+..++|+|||++++++ +.++...+|.+..... .    .       ....+...|..+ .|+|+|++|+++.  .
T Consensus       335 ~~~~~~~~~~spdg~~~~~~-~~~g~~~l~~~~~~~~-~----~-------~l~~~~~~v~~~~~~s~dg~~l~~~~--~  399 (741)
T 2ecf_A          335 WVPLHNSLRFLDDGSILWSS-ERTGFQHLYRIDSKGK-A----A-------ALTHGNWSVDELLAVDEKAGLAYFRA--G  399 (741)
T ss_dssp             CCCCCSCCEECTTSCEEEEE-CTTSSCEEEEECSSSC-E----E-------ESCCSSSCEEEEEEEETTTTEEEEEE--C
T ss_pred             cCCcCCceEECCCCeEEEEe-cCCCccEEEEEcCCCC-e----e-------eeeecceEEEeEeEEeCCCCEEEEEE--e
Confidence               45689999999966554 5555444444432100 0    0       011123367776 5999999987753  3


Q ss_pred             CCcceeEEEEEEecc-Cc-eEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeC----ceEEEEe
Q 014302          355 DDIYKGLIAIYDARR-TP-LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS----GFCCTYP  418 (427)
Q Consensus       355 ~d~~~g~i~vwd~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~----g~i~~~~  418 (427)
                      .+. ...++||++.. +. ...+.      .   ......++|.|+   |..|++..++    +.+.+++
T Consensus       400 ~~~-~~~~~l~~~~~~g~~~~~l~------~---~~~~~~~~~spd---g~~l~~~~~~~~~p~~~~l~~  456 (741)
T 2ecf_A          400 IES-ARESQIYAVPLQGGQPQRLS------K---APGMHSASFARN---ASVYVDSWSNNSTPPQIELFR  456 (741)
T ss_dssp             SSC-TTCBEEEEEETTCCCCEECC------C---SCSEEEEEECTT---SSEEEEEEEETTEEEEEEEEE
T ss_pred             CCC-CceEEEEEEEcCCCCeeecc------c---CCCceEEEECCC---CCEEEEEecCCCCCCeEEEEE
Confidence            321 02589999864 33 22121      1   112447788886   6666666554    4566665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.79  E-value=2.5e-17  Score=167.68  Aligned_cols=276  Identities=12%  Similarity=0.083  Sum_probs=166.1

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCC----
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYP----  175 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~----  175 (427)
                      ..|.+++|||| ..++.+ .++.+++||+..+  .... ...+...+.+++||||| +.|+.+.++.|.+|++...    
T Consensus        82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~--~~~~-l~~~~~~~~~~~~SpdG-~~la~~~~~~i~v~~~~~~~~~~  155 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR--KVTY-LFDTNEETASLDFSPVG-DRVAYVRNHNLYIARGGKLGEGM  155 (706)
T ss_dssp             CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT--EEEE-EECCTTCCTTCEECTTS-SEEEEEETTEEEEEECBCTTSCC
T ss_pred             cCceeEEECCC-CeEEEE-ECCEEEEEECCCC--ceEE-ccCCcccccCCcCCCCC-CEEEEEECCeEEEEecCcccccC
Confidence            36899999999 666655 3599999999876  3322 33456678999999999 5666677899999999720    


Q ss_pred             CCccccccCcccccccccCCCCcce-eEeehhcccCCCceeeeEeCCCCCCcccCc------------------------
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRW-TLVDFLRSQNGEQITALSWGPDGRFPGLGT------------------------  230 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------------------  230 (427)
                      +........           ..... .-....+.+ ...+.+++|+|||++++...                        
T Consensus       156 g~~~~~~~~-----------~~~~~~~g~~~~~ee-~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  223 (706)
T 2z3z_A          156 SRAIAVTID-----------GTETLVYGQAVHQRE-FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL  223 (706)
T ss_dssp             CCCEESCSC-----------CBTTEEESSCCGGGC-TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred             CCcEEeccC-----------CCCCeEcccchhhhh-cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence            211111000           00000 000001111 23467899999998765432                        


Q ss_pred             ------------eE-----------E-----eccCCeEEEEEccCCCEEEEEecCC-----cEEEEEcCCC-Cccccc--
Q 014302          231 ------------PI-----------R-----RGFGGLSILKWSPTGDYFFAAKFDG-----TFYLWETNTW-TSEPWS--  274 (427)
Q Consensus       231 ------------~~-----------~-----~~~~~v~~~~~sp~g~~l~~~~~dg-----~v~iwd~~~~-~~~~~~--  274 (427)
                                  .+           .     .+...+..++|+|||++|++++.++     .|++||+.++ ......  
T Consensus       224 ~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~  303 (706)
T 2z3z_A          224 YYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE  303 (706)
T ss_dssp             CCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred             eCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc
Confidence                        00           0     1224578899999999999877775     8999999988 333222  


Q ss_pred             cCCC---CeeEEEECC--CCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceee-ccCCceeE-EEECCCCCEE
Q 014302          275 STSG---FVTGATWDP--EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQGIEK-IAWDASGERL  347 (427)
Q Consensus       275 ~~~~---~v~~v~~sp--dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~-v~~sp~g~~L  347 (427)
                      .+..   .+..++|+|  ||++++++ ..++.+.+|.+......            ...+ .+...+.. ++|+|+|++|
T Consensus       304 ~~~~~~~~~~~~~~sp~~dg~~l~~~-~~~g~~~l~~~~~~~~~------------~~~l~~~~~~v~~~~~~spdg~~l  370 (706)
T 2z3z_A          304 TDKHYVEPLHPLTFLPGSNNQFIWQS-RRDGWNHLYLYDTTGRL------------IRQVTKGEWEVTNFAGFDPKGTRL  370 (706)
T ss_dssp             ECSSCCCCCSCCEECTTCSSEEEEEE-CTTSSCEEEEEETTSCE------------EEECCCSSSCEEEEEEECTTSSEE
T ss_pred             cCCCeECccCCceeecCCCCEEEEEE-ccCCccEEEEEECCCCE------------EEecCCCCeEEEeeeEEcCCCCEE
Confidence            2222   246789999  99977755 44445555555421000            0011 12235666 7999999999


Q ss_pred             EEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeC----ceEEEEec
Q 014302          348 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS----GFCCTYPL  419 (427)
Q Consensus       348 a~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~----g~i~~~~~  419 (427)
                      +++........ ..|..||+.++....+..         ......++|.|+   |..+++..++    +.|.+|++
T Consensus       371 ~~~~~~~~~~~-~~l~~~d~~~~~~~~l~~---------~~~~~~~~~spd---g~~l~~~~~~~~~p~~i~l~d~  433 (706)
T 2z3z_A          371 YFESTEASPLE-RHFYCIDIKGGKTKDLTP---------ESGMHRTQLSPD---GSAIIDIFQSPTVPRKVTVTNI  433 (706)
T ss_dssp             EEEESSSCTTC-BEEEEEETTCCCCEESCC---------SSSEEEEEECTT---SSEEEEEEECSSCSCEEEEEES
T ss_pred             EEEecCCCCce-EEEEEEEcCCCCceeccC---------CCceEEEEECCC---CCEEEEEecCCCCCcEEEEEEC
Confidence            88633321001 257777877765432221         112457788886   5556655454    45888764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.78  E-value=5.1e-17  Score=149.91  Aligned_cols=245  Identities=9%  Similarity=0.073  Sum_probs=152.4

Q ss_pred             EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCccccccc
Q 014302          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGA  191 (427)
Q Consensus       113 ~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~  191 (427)
                      .+++++.|+.|++|+++............+...+.+++|+|+++.+++++.+ +.+.+|+++..+       +       
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~-------~-------   72 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-------G-------   72 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT-------C-------
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC-------C-------
Confidence            3444477999999999643222223334567789999999999556666655 899999986100       0       


Q ss_pred             ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe-cCCcEEEEEcCCC--
Q 014302          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FDGTFYLWETNTW--  268 (427)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~--  268 (427)
                             ....+.                          .+.. ...+..++|+|+|++|++++ .++.|++||+..+  
T Consensus        73 -------~~~~~~--------------------------~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~  118 (343)
T 1ri6_A           73 -------ALTFAA--------------------------ESAL-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP  118 (343)
T ss_dssp             -------CEEEEE--------------------------EEEC-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred             -------ceeecc--------------------------cccc-CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence                   111111                          1111 12567899999999888655 4888999999522  


Q ss_pred             -CccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC-CCCCccccccccccccceeeccCCceeEEEECCCCCE
Q 014302          269 -TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS-KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER  346 (427)
Q Consensus       269 -~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~  346 (427)
                       +..........+.+++|+|+|++++++...++.+.+|++.. .....  ..     ........+..+..++|+|+|++
T Consensus       119 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~pdg~~  191 (343)
T 1ri6_A          119 VGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA--QD-----PAEVTTVEGAGPRHMVFHPNEQY  191 (343)
T ss_dssp             EEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE--EE-----EEEEECSTTCCEEEEEECTTSSE
T ss_pred             ccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceee--ec-----ccccccCCCCCcceEEECCCCCE
Confidence             22222344556889999999999988775667888988865 21100  00     00001112336789999999998


Q ss_pred             EEEEEecCCCcceeEEEEEEecc--CceEEEeeeeeeeCC-CCCCCceeEEeccCCCCCceeE-EEeeCceEEEEecc
Q 014302          347 LAVSYKGGDDIYKGLIAIYDARR--TPLISLSLIGFIRGP-GDNPKPVAFSFHDKFKQGPLLS-VCWSSGFCCTYPLI  420 (427)
Q Consensus       347 La~~~~~~~d~~~g~i~vwd~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~g~~l~-v~~~~g~i~~~~~~  420 (427)
                      |+++  +..+   +.|.+|++..  +..........+... .....+..++|.|+   |..|. .+..++.|.+|++-
T Consensus       192 l~~~--~~~~---~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d---g~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          192 AYCV--NELN---SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD---GRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEE--ETTT---TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT---SSEEEEEETTTTEEEEEEEC
T ss_pred             EEEE--eCCC---CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC---CCEEEEEecCCCEEEEEEEc
Confidence            8775  3334   5699999953  443222221111111 11233557899886   54454 44478999999874

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=8.2e-17  Score=153.88  Aligned_cols=260  Identities=13%  Similarity=0.139  Sum_probs=159.6

Q ss_pred             ceeeeEEcCCCCEEE----EEeCCCeEEEEEccCC-----CC-c---ceeeccCCcCCeeEEEEccCCCceEEEe-cCCe
Q 014302          101 DLQGVSWHQHKHIVA----FISGSTQVIVRDYEDS-----GK-D---ACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGG  166 (427)
Q Consensus       101 ~V~~l~~sp~g~~la----t~~~d~~v~vwd~~~~-----~~-~---~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~  166 (427)
                      .|++++|+|+|++||    +++.|++|+|||+...     .. .   ......+|...|.+++|+|+...+|+++ .++.
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            699999999999999    7888999999998653     00 0   1234456899999999999844666655 5699


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP  246 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp  246 (427)
                      |++||+.         .+                ....                          ....|...+.+++|+|
T Consensus       174 v~iwD~~---------~~----------------~~~~--------------------------~~~~~~~~v~~v~wsp  202 (434)
T 2oit_A          174 IAVLQVT---------ET----------------VKVC--------------------------ATLPSTVAVTSVCWSP  202 (434)
T ss_dssp             EEEEEES---------SS----------------EEEE--------------------------EEECGGGCEEEEEECT
T ss_pred             EEEEEcC---------CC----------------ccee--------------------------eccCCCCceeEEEEcC
Confidence            9999997         10                0000                          1122566899999999


Q ss_pred             CCCEEEEEecCCcEEEEEcCCCCc-cccc-------cCCCCeeEEEECCCCCEEEEEEcCCc------eeeeeeeCCCCC
Q 014302          247 TGDYFFAAKFDGTFYLWETNTWTS-EPWS-------STSGFVTGATWDPEGRMILLAFAGSL------TLGSIHFASKPP  312 (427)
Q Consensus       247 ~g~~l~~~~~dg~v~iwd~~~~~~-~~~~-------~~~~~v~~v~~spdg~~l~~~~~~~~------~i~~~~~~~~~~  312 (427)
                      +|++|++|+.||.|++||++ ++. ..+.       .|...+.+++|++++.++++....++      .+.+|++.....
T Consensus       203 dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~  281 (434)
T 2oit_A          203 KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEE  281 (434)
T ss_dssp             TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTT
T ss_pred             CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCC
Confidence            99999999999999999998 332 1111       22348999999999988876554442      256666654321


Q ss_pred             ----CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC--ceEEEee--eee----
Q 014302          313 ----SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT--PLISLSL--IGF----  380 (427)
Q Consensus       313 ----~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~--~~~~~~~--~~~----  380 (427)
                          .+.....+. ...   .....+...+.+-++.++|++++..+.|     |.|+.....  .......  ..-    
T Consensus       282 ~~~~~~~~~~~~~-~~~---~~~r~~~~~~~~l~dw~l~~v~s~~s~d-----v~vl~~~~~~~~~~~~~~~d~~ra~lP  352 (434)
T 2oit_A          282 KHPEIFVNFMEPC-YGS---CTERQHHYYLSYIEEWDLVLAASAASTE-----VSILARQSDQINWESWLLEDSSRAELP  352 (434)
T ss_dssp             CCCCEEEECCCSS-CCC---CSSSCCCEEEEEEGGGTEEEEEETTCSB-----CEEEEECTTSSCEEEEEECGGGCCBCC
T ss_pred             CCCcceEecccCC-CCC---CCCcCcceeeehhccCCEEEEecCCCCc-----eeEEEecCCCCccEEEecccccccccc
Confidence                111111110 000   0011122233333777888887666665     666654321  1110000  000    


Q ss_pred             eeCCCCCCCceeEEeccCCC------------CCceeEEEeeCceEEEEeccc
Q 014302          381 IRGPGDNPKPVAFSFHDKFK------------QGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       381 ~~~~~~~~~~~~~~f~~~~~------------~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      +....++..++.+++.-...            ...+|.+-.++|.+..|-|++
T Consensus       353 ~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          353 VTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             BCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             CCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence            00112233344444432221            235788888999999999887

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.77  E-value=1.1e-16  Score=157.13  Aligned_cols=236  Identities=15%  Similarity=0.156  Sum_probs=163.0

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEEccCCCCcceeecc-CCcCCeeEEEEccCCCceEEEecCCeEEEEec--cCCCCccccc
Q 014302          106 SWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP--SYPGNAASVR  182 (427)
Q Consensus       106 ~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~--~~~~~~~~~~  182 (427)
                      +|+|++.++++++.|++|.+||..+.  +...... ++.  +..++|+|||+.+++++.++.|.+||+  .         
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~--~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~---------  210 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSK--KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAK---------  210 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTC--CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSS---------
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCc--eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCC---------
Confidence            48899999999999999999998876  3333333 333  889999999966666666799999999  4         


Q ss_pred             cCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc----CCCEEEEEe-cC
Q 014302          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP----TGDYFFAAK-FD  257 (427)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp----~g~~l~~~~-~d  257 (427)
                      ++                .++.                          .++ +......++|+|    ||++|++++ .+
T Consensus       211 t~----------------~~~~--------------------------~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~  247 (543)
T 1nir_A          211 EP----------------TKVA--------------------------EIK-IGIEARSVESSKFKGYEDRYTIAGAYWP  247 (543)
T ss_dssp             SC----------------EEEE--------------------------EEE-CCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred             CC----------------cEEE--------------------------EEe-cCCCcceEEeCCCcCCCCCEEEEEEccC
Confidence            11                1111                          111 234567899999    999999776 58


Q ss_pred             CcEEEEEcCCCCcccccc------------CCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccc
Q 014302          258 GTFYLWETNTWTSEPWSS------------TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD  325 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~~~------------~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  325 (427)
                      ++|.+||..+.+......            ....+.++.++|++..++++..+++.+.+|++.+.... .          
T Consensus       248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-~----------  316 (543)
T 1nir_A          248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-T----------  316 (543)
T ss_dssp             SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC-E----------
T ss_pred             CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc-e----------
Confidence            999999999887643321            13378899999999988888888889999988764210 0          


Q ss_pred             ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCcee
Q 014302          326 IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLL  405 (427)
Q Consensus       326 ~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l  405 (427)
                      ...+..+..+.+++|+|+|++|+++..+  +   ++|.+||+.+++++...+.+..  +... ....+ ++|+  .|.++
T Consensus       317 ~~~i~~~~~~~~~~~spdg~~l~va~~~--~---~~v~v~D~~tg~l~~~i~~g~~--ph~g-~g~~~-~~p~--~g~~~  385 (543)
T 1nir_A          317 VTSIGAAPFLHDGGWDSSHRYFMTAANN--S---NKVAVIDSKDRRLSALVDVGKT--PHPG-RGANF-VHPK--YGPVW  385 (543)
T ss_dssp             EEEEECCSSCCCEEECTTSCEEEEEEGG--G---TEEEEEETTTTEEEEEEECSSS--BCCT-TCEEE-EETT--TEEEE
T ss_pred             eEEeccCcCccCceECCCCCEEEEEecC--C---CeEEEEECCCCeEEEeeccCCC--CCCC-CCccc-CCCC--CccEE
Confidence            1112233467899999999998875333  3   4699999999987755443321  1110 11122 3554  35666


Q ss_pred             EEEe-eCceEEEEec
Q 014302          406 SVCW-SSGFCCTYPL  419 (427)
Q Consensus       406 ~v~~-~~g~i~~~~~  419 (427)
                      +.+. .++.|.+|+.
T Consensus       386 ~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          386 STSHLGDGSISLIGT  400 (543)
T ss_dssp             EEEBSSSSEEEEEEC
T ss_pred             EeccCCCceEEEEEe
Confidence            6664 5789999975

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.77  E-value=1.3e-15  Score=142.10  Aligned_cols=260  Identities=15%  Similarity=0.164  Sum_probs=160.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCC----CeEEEEEccCCCCccee--eccCCcCCeeEEEEccCCCceEEEec-CCeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGS----TQVIVRDYEDSGKDACI--LTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d----~~v~vwd~~~~~~~~~~--~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~  173 (427)
                      .+..++|+|+|++|++++.+    +.|.+|+++........  ....+......+++  +++.++++.. ++.+.+|++.
T Consensus        51 ~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~  128 (361)
T 3scy_A           51 NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIG  128 (361)
T ss_dssp             CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBC
T ss_pred             CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeC
Confidence            56789999999999998875    79999999874222222  22224456777887  7745555553 4889999997


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                      ..+.....                                ...+.....+.     .+.+.+...+.+++|+|+|++|++
T Consensus       129 ~~g~~~~~--------------------------------~~~~~~~g~~~-----~~~~~~~~~~~~~~~spdg~~l~~  171 (361)
T 3scy_A          129 QDGALLPA--------------------------------SDVIEFKGSGP-----DKERQTMPHLHCVRITPDGKYLLA  171 (361)
T ss_dssp             TTSCBCSC--------------------------------SEEEECCCCCS-----CTTTCSSCCEEEEEECTTSSEEEE
T ss_pred             CCCcCccc--------------------------------ceeEEccCCCC-----CccccCCCcceEEEECCCCCEEEE
Confidence            21110000                                00000000000     001112345788999999998875


Q ss_pred             Ee-cCCcEEEEEcCCCCc----c---------c-cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302          254 AK-FDGTFYLWETNTWTS----E---------P-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  318 (427)
Q Consensus       254 ~~-~dg~v~iwd~~~~~~----~---------~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  318 (427)
                      ++ .++.|++|++.....    .         . ..........++|+|||++++++...++.+.+|++.+......   
T Consensus       172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~---  248 (361)
T 3scy_A          172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI---  248 (361)
T ss_dssp             EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE---
T ss_pred             EeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe---
Confidence            44 588999999875442    1         1 1244566789999999999988876777888888874311000   


Q ss_pred             ccccccccee-eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec--cCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302          319 LPVDLPDIVS-LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RTPLISLSLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       319 ~~~~~~~~~~-~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f  395 (427)
                           ..... ..+...+..++|+|||++|+++..+. +   +.|.+|++.  ++.+..+   ..+.. +  ..+.+++|
T Consensus       249 -----~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-~---~~i~v~~~~~~~g~~~~~---~~~~~-g--~~~~~~~~  313 (361)
T 3scy_A          249 -----QTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-A---DGVAIFKVDETNGTLTKV---GYQLT-G--IHPRNFII  313 (361)
T ss_dssp             -----EEEESCSSCCCCEEEEEECTTSSEEEEEECSS-S---CEEEEEEECTTTCCEEEE---EEEEC-S--SCCCEEEE
T ss_pred             -----EEEecCCCCCCCcccEEECCCCCEEEEECCCC-C---CEEEEEEEcCCCCcEEEe---eEecC-C--CCCceEEE
Confidence                 00000 01122468999999999998753331 2   569999995  4443222   22222 2  23568999


Q ss_pred             ccCCCCCceeEEEe-eCceEEEEecc
Q 014302          396 HDKFKQGPLLSVCW-SSGFCCTYPLI  420 (427)
Q Consensus       396 ~~~~~~g~~l~v~~-~~g~i~~~~~~  420 (427)
                      .|+   |..|.++. .++.|.+|.+=
T Consensus       314 spd---g~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          314 TPN---GKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             CTT---SCEEEEEETTTTEEEEEEEC
T ss_pred             CCC---CCEEEEEECCCCCEEEEEEE
Confidence            986   66666665 67899997653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.77  E-value=3.2e-17  Score=166.93  Aligned_cols=228  Identities=16%  Similarity=0.230  Sum_probs=150.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccC-----CCCcceeeccCCcCC--------------eeEEEEccCCCceEEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYED-----SGKDACILTSDSQRD--------------VKVLEWRPNGGRSLSV  161 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~-----~~~~~~~~~~~~~~~--------------v~~l~~sp~~~~~la~  161 (427)
                      .+.+++|||||++||++ .|+.|++|++..     +  ....+...+...              +.+++|||||+.++++
T Consensus       122 ~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g--~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~  198 (706)
T 2z3z_A          122 ETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS--RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY  198 (706)
T ss_dssp             CCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC--CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE
T ss_pred             cccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC--CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEE
Confidence            57889999999999996 689999999987     5  233333333332              4899999999555444


Q ss_pred             e---------------------------------cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcc
Q 014302          162 G---------------------------------CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRS  208 (427)
Q Consensus       162 g---------------------------------~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (427)
                      +                                 .+..|.+|++.         ++              ....+.. ..
T Consensus       199 ~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~---------~~--------------~~~~~~~-~~  254 (706)
T 2z3z_A          199 RMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLA---------TG--------------KTVYLQT-GE  254 (706)
T ss_dssp             EEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETT---------TT--------------EEEECCC-CS
T ss_pred             EECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECC---------CC--------------ceEeecc-CC
Confidence            4                                 12557788876         11              1111111 11


Q ss_pred             cCCCceeeeEeCCCCCCcccCc-------------------eEE----ec-cC---CeEEEEEcc--CCCEEEEEecCCc
Q 014302          209 QNGEQITALSWGPDGRFPGLGT-------------------PIR----RG-FG---GLSILKWSP--TGDYFFAAKFDGT  259 (427)
Q Consensus       209 ~~~~~v~~~~~spdg~~l~~~~-------------------~~~----~~-~~---~v~~~~~sp--~g~~l~~~~~dg~  259 (427)
                      .....+..++|+|||+.++...                   ..+    .. ..   .+..++|+|  ||++|++++.|+.
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~  334 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW  334 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence            2256688999999998654211                   110    01 11   135679999  9999999999999


Q ss_pred             EEEEEcC-CCCc-cccccCCCCeeE-EEECCCCCEEEEEEcCCc----eeeeeeeCCCCCCccccccccccccceeeccC
Q 014302          260 FYLWETN-TWTS-EPWSSTSGFVTG-ATWDPEGRMILLAFAGSL----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       260 v~iwd~~-~~~~-~~~~~~~~~v~~-v~~spdg~~l~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      ++||++. .++. ..+..+...+.. ++|+|||+.|++++..++    .++.|++.....              ..+.+.
T Consensus       335 ~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~--------------~~l~~~  400 (706)
T 2z3z_A          335 NHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT--------------KDLTPE  400 (706)
T ss_dssp             CEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC--------------EESCCS
T ss_pred             cEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc--------------eeccCC
Confidence            9999886 3333 334456666776 799999999988877654    566665544311              111233


Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      ..+.+++|||||++|++...+.  ..++.|++||+.++.
T Consensus       401 ~~~~~~~~spdg~~l~~~~~~~--~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          401 SGMHRTQLSPDGSAIIDIFQSP--TVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SSEEEEEECTTSSEEEEEEECS--SCSCEEEEEESSSCE
T ss_pred             CceEEEEECCCCCEEEEEecCC--CCCcEEEEEECCCCe
Confidence            4688999999999998864332  233679999998776

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.77  E-value=2.1e-17  Score=168.74  Aligned_cols=245  Identities=12%  Similarity=0.140  Sum_probs=142.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCC---------CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEe
Q 014302          101 DLQGVSWHQHKHIVAFISGS---------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d---------~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~  171 (427)
                      .|.+++|||||++||+++.+         +.+.+||+..+..........|...+..++||||| +.|+.+.++.|.+|+
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~~~i~~~~  140 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFENNIYYCA  140 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEETTEEEEES
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEECCeEEEEE
Confidence            48999999999999999764         78889999877321222223355568999999999 566666678899999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEe-e-hhcccCCCceeeeEeCCCCCCcccCc-------------------
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLV-D-FLRSQNGEQITALSWGPDGRFPGLGT-------------------  230 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~~spdg~~l~~~~-------------------  230 (427)
                      +. .+....+........         -..-. . .........+..++|+|||+.++...                   
T Consensus       141 ~~-~g~~~~~~~~~~~~~---------~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~  210 (723)
T 1xfd_A          141 HV-GKQAIRVVSTGKEGV---------IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY  210 (723)
T ss_dssp             SS-SSCCEEEECCCBTTT---------EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred             CC-CCceEEEecCCCCCc---------eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCC
Confidence            87 111111100000000         00000 0 00000011336777888877643211                   


Q ss_pred             ------------------eE--------------Eec------cCCeEEEEEccCCCEEEEEec----CCcEEEEEcCCC
Q 014302          231 ------------------PI--------------RRG------FGGLSILKWSPTGDYFFAAKF----DGTFYLWETNTW  268 (427)
Q Consensus       231 ------------------~~--------------~~~------~~~v~~~~~sp~g~~l~~~~~----dg~v~iwd~~~~  268 (427)
                                        .+              ..+      ...+..++|||||++|++...    +..|++||+.++
T Consensus       211 ~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g  290 (723)
T 1xfd_A          211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG  290 (723)
T ss_dssp             CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred             CcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence                              01              001      234677999999998875543    257999999988


Q ss_pred             Cccccc--cCCCCe----eEEEECCCCCEEEEE-EcCCc------eeeeeee-CCCCCCccccccccccccceeeccCCc
Q 014302          269 TSEPWS--STSGFV----TGATWDPEGRMILLA-FAGSL------TLGSIHF-ASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       269 ~~~~~~--~~~~~v----~~v~~spdg~~l~~~-~~~~~------~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      +.....  .+...+    ..++|+|||+.|++. +..++      .++.|++ .......   ...+       ..+...
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~---~~~l-------~~~~~~  360 (723)
T 1xfd_A          291 VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDN---IQSI-------TSGDWD  360 (723)
T ss_dssp             CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCC---CCBS-------CCSSSC
T ss_pred             cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccc---eeEe-------ecCCeE
Confidence            764433  333443    388999999988876 54544      4555552 2221000   0000       011223


Q ss_pred             eeE-EEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          335 IEK-IAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       335 i~~-v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      +.. ++|+|||++|+.+.....   .+.++||++..
T Consensus       361 ~~~~~~~spdg~~l~~~~~~~~---~~~~~l~~~~~  393 (723)
T 1xfd_A          361 VTKILAYDEKGNKIYFLSTEDL---PRRRQLYSANT  393 (723)
T ss_dssp             EEEEEEEETTTTEEEEEESSSC---TTCCEEEEECS
T ss_pred             EEeeeEEcCCCCEEEEEEcCCC---CcceEEEEEeC
Confidence            444 699999999987533321   13488999864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.76  E-value=5.5e-17  Score=149.30  Aligned_cols=249  Identities=10%  Similarity=0.071  Sum_probs=156.5

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCcceee-ccCCcC-CeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccc
Q 014302          112 HIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQR-DVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASF  188 (427)
Q Consensus       112 ~~lat~~~d~~v~vwd~~~~~~~~~~~-~~~~~~-~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~  188 (427)
                      ++|++++.+++|++||..+.  +.... ..++.. .+..++|+|+++.+++++.. +.|.+||+.         ++    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~---------~~----   66 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV---------TG----   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT---------TC----
T ss_pred             cEEEEcCCCCeEEEEECCCC--cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC---------CC----
Confidence            47899999999999999876  23222 222222 48899999999666666654 889999986         11    


Q ss_pred             cccccCCCCcceeEeehhcccC----CCceeeeEeCCCCCCcccC---------------ceE-----------E--ecc
Q 014302          189 LGALSRGPGTRWTLVDFLRSQN----GEQITALSWGPDGRFPGLG---------------TPI-----------R--RGF  236 (427)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~---------------~~~-----------~--~~~  236 (427)
                                  .....+....    ...+..++|+|+|+.+...               ..+           .  ...
T Consensus        67 ------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  134 (337)
T 1pby_B           67 ------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP  134 (337)
T ss_dssp             ------------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC
T ss_pred             ------------CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC
Confidence                        1111111110    1145677888888654322               111           1  123


Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCcee--------------
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL--------------  302 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i--------------  302 (427)
                      ..+..++|+|+|++|+++  ++.|++||+.+++.............+.|+|+|+.++++...++.+              
T Consensus       135 ~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  212 (337)
T 1pby_B          135 RQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA  212 (337)
T ss_dssp             SSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred             CCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccc
Confidence            456778899999988877  6889999998877643322111112347899999877655444332              


Q ss_pred             ---------eeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          303 ---------GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       303 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                               +.+++......           ......+...+..++|+|||++|+++     +   +.|++||+.+++.+
T Consensus       213 ~~~~~~~~v~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~s~dg~~l~~~-----~---~~v~~~d~~~~~~~  273 (337)
T 1pby_B          213 DPTAYRTGLLTMDLETGEMA-----------MREVRIMDVFYFSTAVNPAKTRAFGA-----Y---NVLESFDLEKNASI  273 (337)
T ss_dssp             SGGGEEEEEEEEETTTCCEE-----------EEEEEECSSCEEEEEECTTSSEEEEE-----E---SEEEEEETTTTEEE
T ss_pred             cccccccceEEEeCCCCCce-----------EeecCCCCCceeeEEECCCCCEEEEe-----C---CeEEEEECCCCcCc
Confidence                     33333222100           00111223367889999999999885     2   45999999987765


Q ss_pred             EEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          374 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ...+.+        ..+.+++|.|+   |..|.++..++.|.+|++
T Consensus       274 ~~~~~~--------~~~~~~~~s~d---g~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          274 KRVPLP--------HSYYSVNVSTD---GSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEEECS--------SCCCEEEECTT---SCEEEEESBSSEEEEEET
T ss_pred             ceecCC--------CceeeEEECCC---CCEEEEEcCCCcEEEEEC
Confidence            433211        23568899886   667777888999999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=2.9e-16  Score=146.85  Aligned_cols=262  Identities=10%  Similarity=0.066  Sum_probs=158.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEcc-CCCCcceee-ccCCcCCeeEEEEccCCCc-eEEEe--------------c
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE-DSGKDACIL-TSDSQRDVKVLEWRPNGGR-SLSVG--------------C  163 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~-~~~~~~~~~-~~~~~~~v~~l~~sp~~~~-~la~g--------------~  163 (427)
                      .+..++|+|+|++|++++.+ .|.+|++. .+  ..... .....+.+.+++|+|+|+. +++++              .
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--EIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--EEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCC--CEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecC
Confidence            46789999999999988887 99999997 44  22211 1111123667899999954 34444              3


Q ss_pred             CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEE
Q 014302          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILK  243 (427)
Q Consensus       164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~  243 (427)
                      ++.+.+|+++..+.                     ....+..+           .              ..+...+..++
T Consensus       118 ~g~v~v~~~~~~g~---------------------~~~~~~~~-----------~--------------~~~~~~~~~~~  151 (365)
T 1jof_A          118 AGYGNVFSVSETGK---------------------LEKNVQNY-----------E--------------YQENTGIHGMV  151 (365)
T ss_dssp             CCEEEEEEECTTCC---------------------EEEEEEEE-----------E--------------CCTTCCEEEEE
T ss_pred             CceEEEEccCCCCc---------------------CcceEeeE-----------E--------------eCCCCcceEEE
Confidence            57889999861110                     00000000           0              01234678899


Q ss_pred             EccCCCEEEEEe-cCCcEEEEEcC-CCCcccc--c---cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccc
Q 014302          244 WSPTGDYFFAAK-FDGTFYLWETN-TWTSEPW--S---STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  316 (427)
Q Consensus       244 ~sp~g~~l~~~~-~dg~v~iwd~~-~~~~~~~--~---~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~  316 (427)
                      |+|||++|+++. .++.|++||+. +++....  .   .+...+..++|+|||++|+++...++.+.+|++......+..
T Consensus       152 ~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~  231 (365)
T 1jof_A          152 FDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY  231 (365)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE
Confidence            999999988665 36799999998 5554221  1   135678999999999999888776678877776532221110


Q ss_pred             --cccccccccceeeccCC-------ceeEEE-ECCCCCEEEEEEecCCCcceeEEEEEEec-cCceEEEeeeeeeeCCC
Q 014302          317 --HLLPVDLPDIVSLTGSQ-------GIEKIA-WDASGERLAVSYKGGDDIYKGLIAIYDAR-RTPLISLSLIGFIRGPG  385 (427)
Q Consensus       317 --~~~~~~~~~~~~~~~~~-------~i~~v~-~sp~g~~La~~~~~~~d~~~g~i~vwd~~-~~~~~~~~~~~~~~~~~  385 (427)
                        .... .++..  .....       .+..++ |+|||++|+++..+.+....+.|.+|++. ++.+..+.  ..+....
T Consensus       232 ~~~~~~-~~~~~--~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~--~~~~~~~  306 (365)
T 1jof_A          232 THHSFP-LIPPG--IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL--FLSPTPT  306 (365)
T ss_dssp             EEEEEE-SSCTT--CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE--EEEECSS
T ss_pred             ccceEE-cCCCC--cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEee--eeeecCC
Confidence              0000 00000  00111       478999 99999999886544321011369999996 55543221  1122222


Q ss_pred             CCCCceeEEeccC-CCCCceeEEEee-CceEEEEec
Q 014302          386 DNPKPVAFSFHDK-FKQGPLLSVCWS-SGFCCTYPL  419 (427)
Q Consensus       386 ~~~~~~~~~f~~~-~~~g~~l~v~~~-~g~i~~~~~  419 (427)
                      ..  +..++|.|. + +|..|+++.. ++.|.+|++
T Consensus       307 ~~--~~~~a~sp~~~-dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          307 SG--GHSNAVSPCPW-SDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             CC--TTCCCEEECTT-CTTEEEEECSSSCEEEEEEE
T ss_pred             CC--cccceecCCCc-CCCEEEEEEcCCCeEEEEEE
Confidence            22  345667772 1 3667777765 589999975

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.75  E-value=3.5e-16  Score=145.08  Aligned_cols=211  Identities=13%  Similarity=0.133  Sum_probs=135.1

Q ss_pred             ceeeeEEcCCCCEEEEEe-CCCeEEEEEccCCCCcceeeccC----------CcCCeeEEEEccCCCceEEEec-CCeEE
Q 014302          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSD----------SQRDVKVLEWRPNGGRSLSVGC-KGGIC  168 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~-~d~~v~vwd~~~~~~~~~~~~~~----------~~~~v~~l~~sp~~~~~la~g~-~~~i~  168 (427)
                      .+..++|+|+|++|++++ .++.|++|++...+.........          +...+.+++|+|+|+ ++++.. ++.|.
T Consensus        87 ~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~  165 (347)
T 3hfq_A           87 PPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVY  165 (347)
T ss_dssp             CCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEE
T ss_pred             CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEE
Confidence            578899999999888887 67999999996432111111111          123488899999996 766665 47899


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG  248 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g  248 (427)
                      +|++...+                      ......           .+..              ........++|+|||
T Consensus       166 ~~~~~~~g----------------------~~~~~~-----------~~~~--------------~~g~~p~~~~~spdg  198 (347)
T 3hfq_A          166 VYNVSDAG----------------------QLSEQS-----------VLTM--------------EAGFGPRHLVFSPDG  198 (347)
T ss_dssp             EEEECTTS----------------------CEEEEE-----------EEEC--------------CTTCCEEEEEECTTS
T ss_pred             EEEECCCC----------------------cEEEee-----------eEEc--------------CCCCCCceEEECCCC
Confidence            99986111                      000000           0000              012245679999999


Q ss_pred             CEEEE-EecCCcEEEEEcCC--CCccc---cccC------CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccc
Q 014302          249 DYFFA-AKFDGTFYLWETNT--WTSEP---WSST------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  316 (427)
Q Consensus       249 ~~l~~-~~~dg~v~iwd~~~--~~~~~---~~~~------~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~  316 (427)
                      ++|++ +..++.|++|++..  ++...   ....      ...+..++|+|||++|+++...++.+.+|++...     +
T Consensus       199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~-----g  273 (347)
T 3hfq_A          199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD-----G  273 (347)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG-----G
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC-----C
Confidence            97774 56788999999875  33211   1111      1458889999999999777776778888887632     0


Q ss_pred             cccccccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe--ccCceEE
Q 014302          317 HLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRTPLIS  374 (427)
Q Consensus       317 ~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~--~~~~~~~  374 (427)
                      ...     ....+. +...+..++|+|||++|+++..  .+   +.|.+|++  .++.+..
T Consensus       274 ~~~-----~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~---~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          274 HLT-----LIQQISTEGDFPRDFDLDPTEAFVVVVNQ--NT---DNATLYARDLTSGKLSL  324 (347)
T ss_dssp             CEE-----EEEEEECSSSCCCEEEECTTSSEEEEEET--TT---TEEEEEEECTTTCCEEE
T ss_pred             cEE-----EeEEEecCCCCcCeEEECCCCCEEEEEEc--CC---CcEEEEEEeCCCCeEEe
Confidence            000     011111 2336789999999999988633  33   45999955  5566553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=1.2e-16  Score=150.39  Aligned_cols=280  Identities=11%  Similarity=0.036  Sum_probs=158.1

Q ss_pred             eeEEcCCCCEEEEEeC-CCe--EEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          104 GVSWHQHKHIVAFISG-STQ--VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       104 ~l~~sp~g~~lat~~~-d~~--v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      ..+|||||++||+++. ++.  |.+||+..+  ....+...+...+..++|+|||+.++.+..+..+.+|++.. +....
T Consensus        40 ~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g--~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~-g~~~~  116 (388)
T 3pe7_A           40 QKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ--VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT-LEENV  116 (388)
T ss_dssp             SCCBCTTSCEEEEEECTTSSCEEEEEETTTC--EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT-CCEEE
T ss_pred             CccCCCCCCEEEEEEcCCCCceEEEEeCCCC--ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC-Cccee
Confidence            3789999999999887 674  666676655  55555566666666789999996555555568899999872 21110


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeee--EeCCCCCCcc-------------------------------
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITAL--SWGPDGRFPG-------------------------------  227 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~spdg~~l~-------------------------------  227 (427)
                      +                        ...+ ...+...  .++|+|+++.                               
T Consensus       117 ~------------------------~~~~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  171 (388)
T 3pe7_A          117 V------------------------YQVP-AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM  171 (388)
T ss_dssp             E------------------------EECC-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred             e------------------------eech-hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence            0                        0000 1111111  1133333221                               


Q ss_pred             -----cC--ceEEeccCCeEEEEEcc-CCCEEEEEecC------CcEEEEEcCCCCccccccCC--CCeeEEEECCCCCE
Q 014302          228 -----LG--TPIRRGFGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSSTS--GFVTGATWDPEGRM  291 (427)
Q Consensus       228 -----~~--~~~~~~~~~v~~~~~sp-~g~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~--~~v~~v~~spdg~~  291 (427)
                           .+  ..+..+...+..++|+| ||+.|+....+      ..|+++|+.......+..+.  ..+..++|+|||+.
T Consensus       172 ~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~  251 (388)
T 3pe7_A          172 RVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSA  251 (388)
T ss_dssp             EEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSC
T ss_pred             EEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCE
Confidence                 11  12233455688899999 99999865543      36888887766554444333  35788999999998


Q ss_pred             EEEEEcCCc----eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec------CCCcceeE
Q 014302          292 ILLAFAGSL----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG------GDDIYKGL  361 (427)
Q Consensus       292 l~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~------~~d~~~g~  361 (427)
                      |++.+...+    .+++|++.......   .  ...+......  .....++|+|||++|++....      ..+   ..
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~---l--~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~---~~  321 (388)
T 3pe7_A          252 LVYVSYLKGSPDRFIYSADPETLENRQ---L--TSMPACSHLM--SNYDGSLMVGDGSDAPVDVQDDSGYKIEND---PF  321 (388)
T ss_dssp             EEEEEEETTCCCEEEEEECTTTCCEEE---E--EEECCEEEEE--ECTTSSEEEEEECCC------------CCC---CE
T ss_pred             EEEEecCCCCCcceEEEEecCCCceEE---E--EcCCCceeee--ecCCCCeEccCCCcceeEeeeccccccCCC---CE
Confidence            877655432    27777766542110   0  0000000000  011234799999999875321      222   56


Q ss_pred             EEEEEeccCceEEEeeeee----eeCCCCCCCceeEEeccCCCCCceeE-EEeeCceEEEEeccccCCC
Q 014302          362 IAIYDARRTPLISLSLIGF----IRGPGDNPKPVAFSFHDKFKQGPLLS-VCWSSGFCCTYPLIFRSHL  425 (427)
Q Consensus       362 i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~f~~~~~~g~~l~-v~~~~g~i~~~~~~~~~~~  425 (427)
                      |++||+.++....+.....    +.+ .......+++|.|+   |..|+ ....+|..++|-+-.+++.
T Consensus       322 i~~~d~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~spD---g~~l~~~s~~~g~~~l~~~~l~~~~  386 (388)
T 3pe7_A          322 LYVFNMKNGTQHRVARHDTSWKVFEG-DRQVTHPHPSFTPD---DKQILFTSDVHGKPALYLATLPESV  386 (388)
T ss_dssp             EEEEETTTTEEEEEEECCCCCCCBTT-BSSTTCCCCEECTT---SSEEEEEECTTSSCEEEEEECCGGG
T ss_pred             EEEEeccCCceEEeccccCccccccc-ccccCCCCccCCCC---CCEEEEEecCCCceeEEEEECChhc
Confidence            9999999887654432211    000 00001345678876   55454 4445888888887666543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.73  E-value=2.8e-16  Score=166.81  Aligned_cols=271  Identities=11%  Similarity=0.054  Sum_probs=176.1

Q ss_pred             ceeeeEEc-CCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcC-CeeEEEEccCCCceEEEecCCeEE-EEeccCCCC
Q 014302          101 DLQGVSWH-QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR-DVKVLEWRPNGGRSLSVGCKGGIC-IWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~s-p~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~la~g~~~~i~-iw~~~~~~~  177 (427)
                      .+.+++|| |||++||+++ ++.+.+|+....  ... ....|.. .+.+++|+ ||+.++.++.+..+. +|++.    
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~--~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~----  367 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT--YVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR----  367 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSS--BEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT----
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCC--ceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC----
Confidence            58899999 9999999987 889999988765  222 3345666 89999999 985555555556676 77775    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC--------------ce---EEeccCCeE
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG--------------TP---IRRGFGGLS  240 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--------------~~---~~~~~~~v~  240 (427)
                           .+              .  ... +.. ....+..++|+|||++++.+              ..   ...|...+.
T Consensus       368 -----~~--------------~--~~~-l~~-~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          368 -----TG--------------K--AEK-FEE-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             -----TC--------------C--EEE-CCC-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             -----CC--------------C--ceE-ecC-CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence                 11              1  111 222 25778999999999985422              11   124566788


Q ss_pred             EEEEccCCCEEEEEecCC----------cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          241 ILKWSPTGDYFFAAKFDG----------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg----------~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      .++|||||++|++++.++          .|++||+.+++...+..+...+..++|+|||++|++++... ....|..+..
T Consensus       425 ~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~-~~~~~~~~~~  503 (1045)
T 1k32_A          425 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS-LDPSPDRVVL  503 (1045)
T ss_dssp             CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC-CCCEECSSSS
T ss_pred             ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEeccc-CCcCcchhcc
Confidence            999999999999766544          89999999877555567778889999999999999876544 3333332211


Q ss_pred             CC-------------------C--cccccc-----cccccc----ceeec-cCCceeEEEECCCCCEEEEEEe-c-----
Q 014302          311 PP-------------------S--LDAHLL-----PVDLPD----IVSLT-GSQGIEKIAWDASGERLAVSYK-G-----  353 (427)
Q Consensus       311 ~~-------------------~--~~~~~~-----~~~~~~----~~~~~-~~~~i~~v~~sp~g~~La~~~~-~-----  353 (427)
                      ..                   .  +.....     .+++..    ...+. +.+.+..++++|||+++++... +     
T Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~  583 (1045)
T 1k32_A          504 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY  583 (1045)
T ss_dssp             CEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred             ccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccccc
Confidence            00                   0  000000     011111    11122 3457899999999987775100 0     


Q ss_pred             -CCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          354 -GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       354 -~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                       ........|.+||+.++....+.           ..+..++|.|+   |..|+++ +++.|.+|++
T Consensus       584 ~~~~~~~~~l~~~d~~~~~~~~l~-----------~~v~~~~~S~D---G~~l~~~-~~~~i~~~d~  635 (1045)
T 1k32_A          584 YQGAPEKGVLLKYDVKTRKVTEVK-----------NNLTDLRLSAD---RKTVMVR-KDDGKIYTFP  635 (1045)
T ss_dssp             HHCCCCCEEEEEEETTTCCEEEEE-----------EEEEEEEECTT---SCEEEEE-ETTSCEEEEE
T ss_pred             ccccCCCceEEEEECCCCcEEEee-----------cCcceEEECCC---CCEEEEE-cCCcEEEEeC
Confidence             01111267999999888764332           11336678775   7778887 4558999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.73  E-value=1.5e-16  Score=162.36  Aligned_cols=267  Identities=14%  Similarity=0.154  Sum_probs=157.0

Q ss_pred             eeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcC---CeeEEEEccCCCceEEEec---------CCeEEEEe
Q 014302          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR---DVKVLEWRPNGGRSLSVGC---------KGGICIWA  171 (427)
Q Consensus       104 ~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~---~v~~l~~sp~~~~~la~g~---------~~~i~iw~  171 (427)
                      +++|+|+|+++++ +.|++|++||+..+  ....+...|..   .+.+++|||||+.++.++.         ++.+.+|+
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETG--QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSC--CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCC--cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            6799999976555 46999999999887  34444444432   4899999999954444433         47899999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-------------ceEEe----
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-------------TPIRR----  234 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-------------~~~~~----  234 (427)
                      +.         ++              +......+    ...+..++|||||+.++..             ...+.    
T Consensus        97 ~~---------~g--------------~~~~~~~l----~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~  149 (719)
T 1z68_A           97 LS---------NG--------------EFVRGNEL----PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNG  149 (719)
T ss_dssp             TT---------TT--------------EECCSSCC----CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCC
T ss_pred             CC---------CC--------------ccccceec----CcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCC
Confidence            87         22              11000111    2457889999999986522             11111    


Q ss_pred             ccC-----------------CeEEEEEccCCCEEEEEecCC----------------------------------cEEEE
Q 014302          235 GFG-----------------GLSILKWSPTGDYFFAAKFDG----------------------------------TFYLW  263 (427)
Q Consensus       235 ~~~-----------------~v~~~~~sp~g~~l~~~~~dg----------------------------------~v~iw  263 (427)
                      +..                 ....++|||||++|++++.|.                                  .|++|
T Consensus       150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~  229 (719)
T 1z68_A          150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII  229 (719)
T ss_dssp             BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence            111                 114799999999999776542                                  78899


Q ss_pred             EcCCCCcc---c------cccCCCCeeEEEECCCCCEEEEEEcCC---ceeeeee----eCCCCCCccccccccccccce
Q 014302          264 ETNTWTSE---P------WSSTSGFVTGATWDPEGRMILLAFAGS---LTLGSIH----FASKPPSLDAHLLPVDLPDIV  327 (427)
Q Consensus       264 d~~~~~~~---~------~~~~~~~v~~v~~spdg~~l~~~~~~~---~~i~~~~----~~~~~~~~~~~~~~~~~~~~~  327 (427)
                      |+.+++..   .      +..+...+.+++||||++.+++.....   ..|++|+    ......      ..+  ....
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~------~~~--~~~~  301 (719)
T 1z68_A          230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC------PKT--QEHI  301 (719)
T ss_dssp             ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC------CGG--GEEE
T ss_pred             ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce------EEE--Eecc
Confidence            99876642   1      225777899999999987666543322   2466666    322211      000  0000


Q ss_pred             eeccCCcee-----EEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCC
Q 014302          328 SLTGSQGIE-----KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG  402 (427)
Q Consensus       328 ~~~~~~~i~-----~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g  402 (427)
                      ...+.+.+.     .++|+|||+.|+..... .++. ..|.+|++.++....++.      ...  ....+.+. +  .+
T Consensus       302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~g~-~~l~~~~~~~~~~~~lt~------~~~--~v~~~~~~-d--~~  368 (719)
T 1z68_A          302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSD-KDGY-KHIHYIKDTVENAIQITS------GKW--EAINIFRV-T--QD  368 (719)
T ss_dssp             EECSSSCSSSSSCCCCEECTTSSCEEEEEEC-TTSC-EEEEEESSCSTTCEECSC------SSS--CEEEEEEE-C--SS
T ss_pred             cccCCceEccccCCccEECCCCCeEEEEEEc-cCCc-eEEEEEECCCCceEeccc------Cce--EEEEEEEE-e--CC
Confidence            011222444     78999999977653222 2212 568888887766443321      111  12233343 2  24


Q ss_pred             ceeEEEee----CceEEEEeccc
Q 014302          403 PLLSVCWS----SGFCCTYPLIF  421 (427)
Q Consensus       403 ~~l~v~~~----~g~i~~~~~~~  421 (427)
                      .++..+..    ++.+++|.+-.
T Consensus       369 ~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          369 SLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             EEEEEESCGGGCTTCBEEEEEEC
T ss_pred             EEEEEEecCCCCCceEEEEEEeC
Confidence            44544433    47788887655

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.73  E-value=7e-16  Score=157.82  Aligned_cols=237  Identities=14%  Similarity=0.215  Sum_probs=145.3

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcC-----CeeEEEEccCCCceEEEecC---------CeE
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQR-----DVKVLEWRPNGGRSLSVGCK---------GGI  167 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~-----~v~~l~~sp~~~~~la~g~~---------~~i  167 (427)
                      ..+++|+|||++|+++  |++|++||+.++  ....+...|..     ...+++|||||+.++.+..+         +.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            4578999999999886  999999999887  33444444432     22458999999544444432         456


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC-------------ceEEe
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG-------------TPIRR  234 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-------------~~~~~  234 (427)
                      .+||+.         ++                ... .+..+ ...+..++|||||+.++-.             ...+.
T Consensus        95 ~~~d~~---------~~----------------~~~-~l~~~-~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           95 DIYDLN---------KR----------------QLI-TEERI-PNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEEETT---------TT----------------EEC-CSSCC-CTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEEC
T ss_pred             EEEECC---------CC----------------cEE-EcccC-CCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEE
Confidence            689987         22                111 13332 4568899999999986521             11111


Q ss_pred             ----cc-----------------CCeEEEEEccCCCEEEEEecCC-----------------------------------
Q 014302          235 ----GF-----------------GGLSILKWSPTGDYFFAAKFDG-----------------------------------  258 (427)
Q Consensus       235 ----~~-----------------~~v~~~~~sp~g~~l~~~~~dg-----------------------------------  258 (427)
                          +.                 +....+.|||||++||..+.|.                                   
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~  227 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT  227 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence                11                 1113488999999999664322                                   


Q ss_pred             -cEEEEEcCC---CC---ccccc------cCCCCeeEEEECCCCCEEEEEEcCC---ceeeeeeeCCCCCCccccccccc
Q 014302          259 -TFYLWETNT---WT---SEPWS------STSGFVTGATWDPEGRMILLAFAGS---LTLGSIHFASKPPSLDAHLLPVD  322 (427)
Q Consensus       259 -~v~iwd~~~---~~---~~~~~------~~~~~v~~v~~spdg~~l~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~  322 (427)
                       .|++||+.+   ++   ...+.      .+...+..++|||||+.+++.....   ..|+++++.........  .  .
T Consensus       228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~--~--~  303 (740)
T 4a5s_A          228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC--L--V  303 (740)
T ss_dssp             EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE--C--G
T ss_pred             eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce--e--E
Confidence             478889887   63   22222      2677899999999999777655443   35677776654310000  0  0


Q ss_pred             cccceeeccCCc-----eeEEEECCCCCEEE-EEEecCCCcceeEEEEEEeccCceEEEe
Q 014302          323 LPDIVSLTGSQG-----IEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTPLISLS  376 (427)
Q Consensus       323 ~~~~~~~~~~~~-----i~~v~~sp~g~~La-~~~~~~~d~~~g~i~vwd~~~~~~~~~~  376 (427)
                      ........+.+.     ...++|+|||+.|+ ..+..+..   ..|++|++.++....++
T Consensus       304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~---~~l~~~~~~~~~~~~lT  360 (740)
T 4a5s_A          304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGY---RHICYFQIDKKDCTFIT  360 (740)
T ss_dssp             GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSC---EEEEEEETTCSSCEESC
T ss_pred             EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCc---eEEEEEECCCCceEecc
Confidence            000000111122     23788999999988 53222222   67999999887765443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.73  E-value=1.9e-16  Score=167.99  Aligned_cols=271  Identities=14%  Similarity=0.121  Sum_probs=176.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .+.++.|+++ .++++++.|++++||.++........+ ..|. .+..++|+||| ..|+.+.++.|.+|++. ..... 
T Consensus       205 ~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~-~~~~~~~SpDG-~~la~~~~~~i~~~d~~-~~~l~-  278 (1045)
T 1k32_A          205 HVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFT-DYYPRHLNTDG-RRILFSKGGSIYIFNPD-TEKIE-  278 (1045)
T ss_dssp             CCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCC-SSCEEEEEESS-SCEEEEETTEEEEECTT-TCCEE-
T ss_pred             cccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEe-cCCC-CcceeeEcCCC-CEEEEEeCCEEEEecCC-ceEee-
Confidence            6889999988 666777788999999887643223222 2333 46778999999 56666678999999874 11100 


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC-CCCCCcccCc-------------e--EEeccC-CeEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRFPGLGT-------------P--IRRGFG-GLSILK  243 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~~~~-------------~--~~~~~~-~v~~~~  243 (427)
                                .+.......   ...... ....+..++|+ |||+.++...             .  +..+.. .+..++
T Consensus       279 ----------~l~~~~~~~---~~~~~~-~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  344 (1045)
T 1k32_A          279 ----------KIEIGDLES---PEDRII-SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRG  344 (1045)
T ss_dssp             ----------ECCCCCCCB---CCSEEE-ECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEEC
T ss_pred             ----------eeccCcccc---cccccc-cccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeee
Confidence                      000000000   000001 13468899999 9998754221             1  112334 678899


Q ss_pred             EccCCCEEEEEecCCcEE-EEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFY-LWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVD  322 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  322 (427)
                      |+ ||+.|+.++.++.++ +||+.+++...+..+...+..++|+|||++|++++.+ +.+++|++......         
T Consensus       345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~-~~v~~~d~~tg~~~---------  413 (1045)
T 1k32_A          345 GD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR-FEIMTVDLETGKPT---------  413 (1045)
T ss_dssp             SS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETT-SEEEEEETTTCCEE---------
T ss_pred             Ec-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCC-CeEEEEECCCCceE---------
Confidence            99 999999888888888 9999887765555777889999999999999987654 48888887654210         


Q ss_pred             cccceee-ccCCceeEEEECCCCCEEEEEEecC----CCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302          323 LPDIVSL-TGSQGIEKIAWDASGERLAVSYKGG----DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       323 ~~~~~~~-~~~~~i~~v~~sp~g~~La~~~~~~----~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                          ... .+.+.+.+++|||||++||++....    .....+.|++||+.++....+.      ..  ......++|.|
T Consensus       414 ----~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~------~~--~~~~~~~~~sp  481 (1045)
T 1k32_A          414 ----VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT------TE--NSHDYAPAFDA  481 (1045)
T ss_dssp             ----EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS------CS--SSBEEEEEECT
T ss_pred             ----EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee------CC--CcccCCceEcC
Confidence                011 2334779999999999998864432    0011267999999887644222      11  11244677888


Q ss_pred             CCCCCceeEEEeeCceEEEE
Q 014302          398 KFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       398 ~~~~g~~l~v~~~~g~i~~~  417 (427)
                      +   |..|+++..++....|
T Consensus       482 d---G~~l~~~s~~~~~~~~  498 (1045)
T 1k32_A          482 D---SKNLYYLSYRSLDPSP  498 (1045)
T ss_dssp             T---SCEEEEEESCCCCCEE
T ss_pred             C---CCEEEEEecccCCcCc
Confidence            6   6677777665554443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.73  E-value=1.3e-15  Score=140.93  Aligned_cols=247  Identities=11%  Similarity=0.006  Sum_probs=154.2

Q ss_pred             eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeecc-CCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccc
Q 014302          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-DSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS  180 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~  180 (427)
                      +.+++++++.++++++.+++|++||..+.  +...... .....+..++|+|+++.+++++. ++.|.+|++.       
T Consensus         3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-------   73 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-------   73 (349)
T ss_dssp             -CCCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-------
T ss_pred             ccccccCCCEEEEEeCCCCeEEEEECCCC--cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-------
Confidence            35678899999999999999999999876  2322222 22225789999999955555554 4889999986       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC---
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD---  257 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---  257 (427)
                        ++                .....+... ..        +         ..  ....+..++|+|+|++|++++.+   
T Consensus        74 --t~----------------~~~~~~~~~-~~--------~---------~~--~~~~~~~~~~spdg~~l~~~~~~~~~  115 (349)
T 1jmx_B           74 --TC----------------KNTFHANLS-SV--------P---------GE--VGRSMYSFAISPDGKEVYATVNPTQR  115 (349)
T ss_dssp             --TT----------------EEEEEEESC-CS--------T---------TE--EEECSSCEEECTTSSEEEEEEEEEEE
T ss_pred             --CC----------------cEEEEEEcc-cc--------c---------cc--ccccccceEECCCCCEEEEEcccccc
Confidence              11                111111100 00        0         00  01236678999999999977755   


Q ss_pred             ---------CcEEEEEcCCCCccc---cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccc-----
Q 014302          258 ---------GTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHL-----  318 (427)
Q Consensus       258 ---------g~v~iwd~~~~~~~~---~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~-----  318 (427)
                               +.|.+||+.+++...   ...+...+.+++|+|||+ ++++ +.  .+++|+..+...  .+....     
T Consensus       116 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~~--~i~~~d~~~~~~~~~~~~~~~~~~~  191 (349)
T 1jmx_B          116 LNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVA-GP--DIYKMDVKTGKYTVALPLRNWNRKG  191 (349)
T ss_dssp             CSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEE-SS--SEEEECTTTCCEEEEECSTTCCCTT
T ss_pred             cccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEc-cC--cEEEEeCCCCceeccccccccCCcc
Confidence                     899999998754322   223445688999999999 5553 22  366666554321  111000     


Q ss_pred             --------------------ccc------------------------ccc--cc---eeeccCCceeEEEECC-CCCEEE
Q 014302          319 --------------------LPV------------------------DLP--DI---VSLTGSQGIEKIAWDA-SGERLA  348 (427)
Q Consensus       319 --------------------~~~------------------------~~~--~~---~~~~~~~~i~~v~~sp-~g~~La  348 (427)
                                          .+.                        +..  ..   ........+..++|+| +|++|+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~  271 (349)
T 1jmx_B          192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY  271 (349)
T ss_dssp             BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE
T ss_pred             ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEE
Confidence                                000                        000  00   0000123567889999 999998


Q ss_pred             EEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          349 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       349 ~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++     +   +.|.+||+.+++.+...+.+        ..+.+++|.|+   |..|.++..++.|.+|+.
T Consensus       272 ~~-----~---~~v~~~d~~~~~~~~~~~~~--------~~~~~~~~s~d---g~~l~~~~~~~~v~v~d~  323 (349)
T 1jmx_B          272 GV-----L---NRLAKYDLKQRKLIKAANLD--------HTYYCVAFDKK---GDKLYLGGTFNDLAVFNP  323 (349)
T ss_dssp             EE-----E---SEEEEEETTTTEEEEEEECS--------SCCCEEEECSS---SSCEEEESBSSEEEEEET
T ss_pred             EE-----c---CeEEEEECccCeEEEEEcCC--------CCccceEECCC---CCEEEEecCCCeEEEEec
Confidence            84     2   56999999988765433211        12558899886   556677888899999985

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.68  E-value=2.1e-15  Score=138.68  Aligned_cols=224  Identities=13%  Similarity=0.063  Sum_probs=144.3

Q ss_pred             eeeeEEcCCCCEEE-EEeCCCeEEEEEccCCCCcceeeccCC----cCCeeEEEEccCCCceEEEe------------cC
Q 014302          102 LQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDS----QRDVKVLEWRPNGGRSLSVG------------CK  164 (427)
Q Consensus       102 V~~l~~sp~g~~la-t~~~d~~v~vwd~~~~~~~~~~~~~~~----~~~v~~l~~sp~~~~~la~g------------~~  164 (427)
                      +..++|+|+|++|+ ++..++.|.+||+.+... ...+...+    ...+.+++|+|+|+.++++.            .+
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            67899999998664 555678999999887621 11222222    23678899999995444443            35


Q ss_pred             CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc------------CceE
Q 014302          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL------------GTPI  232 (427)
Q Consensus       165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~------------~~~~  232 (427)
                      +.|.+|++.         ++                .....+..  ...+..++|+|||+++..            +...
T Consensus       115 ~~i~v~d~~---------~~----------------~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~  167 (337)
T 1pby_B          115 TRVALYDAE---------TL----------------SRRKAFEA--PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV  167 (337)
T ss_dssp             CEEEEEETT---------TT----------------EEEEEEEC--CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEE
T ss_pred             ceEEEEECC---------CC----------------cEEEEEeC--CCCcceeEECCCCCEEEEeCCeEEEEECCCCcEe
Confidence            889999987         11                12222221  334678899999986432            1111


Q ss_pred             Eec--cCCeEEEEEccCCCEEEEEec-CC-----------------------cEEEEEcCCCCccc--cccCCCCeeEEE
Q 014302          233 RRG--FGGLSILKWSPTGDYFFAAKF-DG-----------------------TFYLWETNTWTSEP--WSSTSGFVTGAT  284 (427)
Q Consensus       233 ~~~--~~~v~~~~~sp~g~~l~~~~~-dg-----------------------~v~iwd~~~~~~~~--~~~~~~~v~~v~  284 (427)
                      ...  ......+.|+|+|++|+..+. ++                       .|.+||+.+++...  ...+...+.+++
T Consensus       168 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  247 (337)
T 1pby_B          168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA  247 (337)
T ss_dssp             EEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEE
T ss_pred             eeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEE
Confidence            111  010123368899987764432 22                       46899998877642  225556788999


Q ss_pred             ECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEE
Q 014302          285 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAI  364 (427)
Q Consensus       285 ~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~v  364 (427)
                      |+|||++++++   ++.+++|++.+...             ...+..+..+.+++|+|+|++|+++   +.+   +.|++
T Consensus       248 ~s~dg~~l~~~---~~~v~~~d~~~~~~-------------~~~~~~~~~~~~~~~s~dg~~l~~~---~~~---~~i~v  305 (337)
T 1pby_B          248 VNPAKTRAFGA---YNVLESFDLEKNAS-------------IKRVPLPHSYYSVNVSTDGSTVWLG---GAL---GDLAA  305 (337)
T ss_dssp             ECTTSSEEEEE---ESEEEEEETTTTEE-------------EEEEECSSCCCEEEECTTSCEEEEE---SBS---SEEEE
T ss_pred             ECCCCCEEEEe---CCeEEEEECCCCcC-------------cceecCCCceeeEEECCCCCEEEEE---cCC---CcEEE
Confidence            99999999876   35777777654311             1111223467899999999999884   334   66999


Q ss_pred             EEeccCceEEE
Q 014302          365 YDARRTPLISL  375 (427)
Q Consensus       365 wd~~~~~~~~~  375 (427)
                      ||+.+++.+..
T Consensus       306 ~d~~~~~~~~~  316 (337)
T 1pby_B          306 YDAETLEKKGQ  316 (337)
T ss_dssp             EETTTCCEEEE
T ss_pred             EECcCCcEEEE
Confidence            99998877643

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.67  E-value=1.4e-13  Score=128.28  Aligned_cols=250  Identities=11%  Similarity=0.111  Sum_probs=150.8

Q ss_pred             cCCCCEEEEEe----CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC----CeEEEEeccCCCCcc
Q 014302          108 HQHKHIVAFIS----GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK----GGICIWAPSYPGNAA  179 (427)
Q Consensus       108 sp~g~~lat~~----~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~----~~i~iw~~~~~~~~~  179 (427)
                      .+...++++|+    .++.|.+|.++........+...+...+..++|+||++.+++++.+    +.+.+|+++..    
T Consensus        10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~----   85 (361)
T 3scy_A           10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE----   85 (361)
T ss_dssp             GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT----
T ss_pred             CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC----
Confidence            34445666774    3578999988764222222222266778899999999545555543    68999998710    


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe-cCC
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FDG  258 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~dg  258 (427)
                         ++              ....+.                          ....+......+++  ++++|++++ .++
T Consensus        86 ---~g--------------~~~~~~--------------------------~~~~~~~~p~~~~~--dg~~l~~~~~~~~  120 (361)
T 3scy_A           86 ---KG--------------TLHLLN--------------------------TQKTMGADPCYLTT--NGKNIVTANYSGG  120 (361)
T ss_dssp             ---TT--------------EEEEEE--------------------------EEECSSSCEEEEEE--CSSEEEEEETTTT
T ss_pred             ---CC--------------cEEEee--------------------------EeccCCCCcEEEEE--CCCEEEEEECCCC
Confidence               00              111111                          01112234556666  888888655 688


Q ss_pred             cEEEEEcCCCCcc-ccc--------------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC----C-ccccc
Q 014302          259 TFYLWETNTWTSE-PWS--------------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP----S-LDAHL  318 (427)
Q Consensus       259 ~v~iwd~~~~~~~-~~~--------------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~----~-~~~~~  318 (427)
                      .|.+|++...... ...              .+...+.+++|+|||++|+++...++.+.+|++.....    . +....
T Consensus       121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            9999999754331 110              11234578999999999888777677888888875421    1 11000


Q ss_pred             cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  398 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  398 (427)
                      .    ........+..+..++|+|||++|+++  +..+   +.|.+|++.++.+..+.....  .+.....+..++|.|+
T Consensus       201 ~----~~~~~~~~~~~~~~~~~spdg~~l~v~--~~~~---~~v~v~~~~~g~~~~~~~~~~--~~~~~~~~~~i~~spd  269 (361)
T 3scy_A          201 T----PEAFKVAPGSGPRHLIFNSDGKFAYLI--NEIG---GTVIAFRYADGMLDEIQTVAA--DTVNAQGSGDIHLSPD  269 (361)
T ss_dssp             E----EEEEECCTTCCEEEEEECTTSSEEEEE--ETTT---CEEEEEEEETTEEEEEEEEES--CSSCCCCEEEEEECTT
T ss_pred             c----ccceecCCCCCCeEEEEcCCCCEEEEE--cCCC---CeEEEEEecCCceEEeEEEec--CCCCCCCcccEEECCC
Confidence            0    001112233467899999999999885  3233   569999998775533322211  1222233568999986


Q ss_pred             CCCCceeEEEee--CceEEEEecc
Q 014302          399 FKQGPLLSVCWS--SGFCCTYPLI  420 (427)
Q Consensus       399 ~~~g~~l~v~~~--~g~i~~~~~~  420 (427)
                         |..|.++..  ++.|.+|++-
T Consensus       270 ---g~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          270 ---GKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             ---SSEEEEEECSSSCEEEEEEEC
T ss_pred             ---CCEEEEECCCCCCEEEEEEEc
Confidence               666656554  4899999874

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.65  E-value=9e-14  Score=128.68  Aligned_cols=211  Identities=11%  Similarity=0.040  Sum_probs=138.9

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeeccCCc-C--------CeeEEEEccCCCceEEEe-c-CCeEE
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQ-R--------DVKVLEWRPNGGRSLSVG-C-KGGIC  168 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~~~~-~--------~v~~l~~sp~~~~~la~g-~-~~~i~  168 (427)
                      .+..++|+|+|++++++ ..++.|.+||..++  +.......+. .        .+.+++|+|+++.+++++ . ++.|.
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTG--EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCC--eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence            46789999999966554 55799999999876  2222222211 1        268899999996565555 2 47799


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc--------------cCceEE-
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG--------------LGTPIR-  233 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~--------------~~~~~~-  233 (427)
                      +||..         ++                .....+... ...+..++|+|+|+.+.              .+.... 
T Consensus       168 ~~d~~---------~~----------------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~  221 (353)
T 3vgz_A          168 VVDGG---------NI----------------KLKTAIQNT-GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR  221 (353)
T ss_dssp             EEETT---------TT----------------EEEEEECCC-CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             EEcCC---------CC----------------ceEEEecCC-CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence            99987         11                222222212 33467788888887532              111111 


Q ss_pred             --e----ccCCeEEEEEccCCCEEEEEec-CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          234 --R----GFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       234 --~----~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                        .    +...+..++|+|+|++|++++. ++.|.+||+.+++......... ...++|+|+|++++++...++.+.+|+
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-SLAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CceEEECCCCCEEEEEECCCCeEEEEE
Confidence              1    2234667999999998885554 5899999998887644332222 357999999998888877777888888


Q ss_pred             eCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302          307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      ..+...             ...+.....+..++|+|||++|+++...
T Consensus       301 ~~~~~~-------------~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          301 AKSYKV-------------VKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             TTTTEE-------------EEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CCCCeE-------------EEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            765411             1112223467999999999988886544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.62  E-value=1.7e-14  Score=147.12  Aligned_cols=232  Identities=14%  Similarity=0.132  Sum_probs=139.1

Q ss_pred             ceeeeEEcCCCCEEEEEeC---------CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEe
Q 014302          101 DLQGVSWHQHKHIVAFISG---------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~---------d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~  171 (427)
                      .|.+++|||||++||+++.         ++.|++||+..+  .... .......+.+++||||| +.|+.+.++.|++|+
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g--~~~~-~~~l~~~~~~~~~SPDG-~~la~~~~~~i~~~~  136 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG--EFVR-GNELPRPIQYLCWSPVG-SKLAYVYQNNIYLKQ  136 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EECC-SSCCCSSBCCEEECSST-TCEEEEETTEEEEES
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC--cccc-ceecCcccccceECCCC-CEEEEEECCeEEEEe
Confidence            3789999999999998876         689999999877  2200 01112468999999999 566777789999999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhccc--------CCCceeeeEeCCCCCCcccCc-------------
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ--------NGEQITALSWGPDGRFPGLGT-------------  230 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~spdg~~l~~~~-------------  230 (427)
                      +.. +....+...           +....    .+.++        .......++|+|||+.++...             
T Consensus       137 ~~~-g~~~~l~~~-----------~~~~~----v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~  200 (719)
T 1z68_A          137 RPG-DPPFQITFN-----------GRENK----IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSY  200 (719)
T ss_dssp             STT-SCCEECCCC-----------CBTTT----EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEE
T ss_pred             CCC-CCcEEEecC-----------CCcCC----eEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeec
Confidence            861 111110000           00000    00000        012235899999998765321             


Q ss_pred             ------------------------eEE----------------------eccCCeEEEEEccCCCEEEEEecCC----cE
Q 014302          231 ------------------------PIR----------------------RGFGGLSILKWSPTGDYFFAAKFDG----TF  260 (427)
Q Consensus       231 ------------------------~~~----------------------~~~~~v~~~~~sp~g~~l~~~~~dg----~v  260 (427)
                                              .+.                      .+...+..++||||++.+++....+    .|
T Consensus       201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l  280 (719)
T 1z68_A          201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL  280 (719)
T ss_dssp             CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred             cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence                                    000                      1223468899999987776644332    48


Q ss_pred             EEEE----cCCCCccccc-----cCCCCee-----EEEECCCCCEEEEE-EcCCc--eeeeeeeCCCCCCcccccccccc
Q 014302          261 YLWE----TNTWTSEPWS-----STSGFVT-----GATWDPEGRMILLA-FAGSL--TLGSIHFASKPPSLDAHLLPVDL  323 (427)
Q Consensus       261 ~iwd----~~~~~~~~~~-----~~~~~v~-----~v~~spdg~~l~~~-~~~~~--~i~~~~~~~~~~~~~~~~~~~~~  323 (427)
                      ++||    +.+++.....     .+...+.     .+.|+|||+.+++. +..++  .|+.+++.....      .    
T Consensus       281 ~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~------~----  350 (719)
T 1z68_A          281 SICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA------I----  350 (719)
T ss_dssp             EEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC------E----
T ss_pred             EEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce------E----
Confidence            8899    7776664443     4566666     89999999977663 33333  455555433210      0    


Q ss_pred             ccceeeccCCceeEEEECCCCCEEEEEEec--CCCcceeEEEEEEecc
Q 014302          324 PDIVSLTGSQGIEKIAWDASGERLAVSYKG--GDDIYKGLIAIYDARR  369 (427)
Q Consensus       324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~~~--~~d~~~g~i~vwd~~~  369 (427)
                         ....+...+..+.++ +++.|+.+...  ..+   +.++||.+..
T Consensus       351 ---~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~---~~~~l~~~~~  391 (719)
T 1z68_A          351 ---QITSGKWEAINIFRV-TQDSLFYSSNEFEEYP---GRRNIYRISI  391 (719)
T ss_dssp             ---ECSCSSSCEEEEEEE-CSSEEEEEESCGGGCT---TCBEEEEEEC
T ss_pred             ---ecccCceEEEEEEEE-eCCEEEEEEecCCCCC---ceEEEEEEeC
Confidence               001122256777777 88888876433  112   4478888754

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.62  E-value=9.5e-14  Score=130.70  Aligned_cols=293  Identities=10%  Similarity=-0.020  Sum_probs=154.4

Q ss_pred             eeeeEEcCCCCEEEEEeCC---CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          102 LQGVSWHQHKHIVAFISGS---TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      +..++|+|||++||.....   ..+.+|++..+  ....+...+......+.|+|||+.++.++.++.+.+|++. .+..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~-~~~~  114 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ--QAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLE-TLEE  114 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT--EEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETT-TCCE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCC--cEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECC-CCCc
Confidence            5678999999998877543   36777777665  3333333333333448899999655566666789999986 2221


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccC--CCceeeeEeCCCCCCcc-------------------cCc--eEEec
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQN--GEQITALSWGPDGRFPG-------------------LGT--PIRRG  235 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~-------------------~~~--~~~~~  235 (427)
                      ..+....        ......-..+.......  ......+.|+|+|+.++                   .+.  .+..+
T Consensus       115 ~~~~~~~--------~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~  186 (396)
T 3c5m_A          115 QVIYTVD--------EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD  186 (396)
T ss_dssp             EEEEECC--------TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE
T ss_pred             EEEEecc--------cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC
Confidence            1111100        00000000000000000  00000145666665422                   111  12234


Q ss_pred             cCCeEEEEEcc-CCCEEEEEecC------CcEEEEEcCCCCccccccC--CCCeeEEEECCCCCEEEEEEcCC----cee
Q 014302          236 FGGLSILKWSP-TGDYFFAAKFD------GTFYLWETNTWTSEPWSST--SGFVTGATWDPEGRMILLAFAGS----LTL  302 (427)
Q Consensus       236 ~~~v~~~~~sp-~g~~l~~~~~d------g~v~iwd~~~~~~~~~~~~--~~~v~~v~~spdg~~l~~~~~~~----~~i  302 (427)
                      ...+..+.|+| +++.|+..+.+      ..|++||+...+...+..+  ...+..++|+|||++|++++...    ..+
T Consensus       187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          187 TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred             CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence            45678899999 88877755443      3588888876654433332  23578899999999888775542    236


Q ss_pred             eeeeeCCCCCCccccccccccccceeeccCCceeEEEECC-CCCEEEEEEecC----C------CcceeEEEEEEeccCc
Q 014302          303 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSYKGG----D------DIYKGLIAIYDARRTP  371 (427)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~La~~~~~~----~------d~~~g~i~vwd~~~~~  371 (427)
                      ++|++.......      +     ..  .. ... +.|+| ||++|+++....    .      ......|++||+.++.
T Consensus       267 ~~~d~~~g~~~~------l-----~~--~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          267 YKANPETLENEE------V-----MV--MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             EEECTTTCCEEE------E-----EE--CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB
T ss_pred             EEEECCCCCeEE------e-----ee--CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc
Confidence            666654431100      0     00  01 123 89999 999888743110    0      0011569999998876


Q ss_pred             eEEEeeeee-ee--CCCCCCCceeEEeccCCCCCceeEEE-eeCceEEEEeccccC
Q 014302          372 LISLSLIGF-IR--GPGDNPKPVAFSFHDKFKQGPLLSVC-WSSGFCCTYPLIFRS  423 (427)
Q Consensus       372 ~~~~~~~~~-~~--~~~~~~~~~~~~f~~~~~~g~~l~v~-~~~g~i~~~~~~~~~  423 (427)
                      ...+..... +.  ..........++|.|+   |..|+++ ..+|...+|-+-..+
T Consensus       332 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~d---g~~l~~~s~~~~~~~l~~~~~~~  384 (396)
T 3c5m_A          332 AQKLCKHSTSWDVLDGDRQITHPHPSFTPN---DDGVLFTSDFEGVPAIYIADVPE  384 (396)
T ss_dssp             CCEEEECCCCCCCBTTBSSTTCCCCEECTT---SSEEEEEECTTSSCEEEEEECCT
T ss_pred             eEEccCCCCccccccccccCCCCCceEccC---CCeEEEEecCCCCceEEEEEEcc
Confidence            543332110 00  0000001234567775   5545544 446777777665444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.59  E-value=1.5e-13  Score=126.93  Aligned_cols=76  Identities=13%  Similarity=0.158  Sum_probs=53.1

Q ss_pred             CCeeEEEECC-CCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC
Q 014302          278 GFVTGATWDP-EGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD  356 (427)
Q Consensus       278 ~~v~~v~~sp-dg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d  356 (427)
                      ..+..++|+| +|++++++   ++.+.+|++.+...             ...+.....+.+++|+|+|++|+++   +.+
T Consensus       255 ~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~-------------~~~~~~~~~~~~~~~s~dg~~l~~~---~~~  315 (349)
T 1jmx_B          255 ELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKL-------------IKAANLDHTYYCVAFDKKGDKLYLG---GTF  315 (349)
T ss_dssp             SCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEE-------------EEEEECSSCCCEEEECSSSSCEEEE---SBS
T ss_pred             CcceeeEecCCCCCEEEEE---cCeEEEEECccCeE-------------EEEEcCCCCccceEECCCCCEEEEe---cCC
Confidence            4567888999 99998876   44777777665311             0111123357899999999999883   334


Q ss_pred             cceeEEEEEEeccCceEEE
Q 014302          357 IYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       357 ~~~g~i~vwd~~~~~~~~~  375 (427)
                         +.|++||+.+++.+..
T Consensus       316 ---~~v~v~d~~~~~~~~~  331 (349)
T 1jmx_B          316 ---NDLAVFNPDTLEKVKN  331 (349)
T ss_dssp             ---SEEEEEETTTTEEEEE
T ss_pred             ---CeEEEEeccccceeee
Confidence               6699999998876543

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.59  E-value=1.9e-14  Score=143.05  Aligned_cols=214  Identities=11%  Similarity=0.070  Sum_probs=141.4

Q ss_pred             ceeeeEEcCCCCEEEEEeC---CCeEEEEEccC--CCCcceeeccCCcCCeeEEEEccCCCce-EEEecCCeEEEEeccC
Q 014302          101 DLQGVSWHQHKHIVAFISG---STQVIVRDYED--SGKDACILTSDSQRDVKVLEWRPNGGRS-LSVGCKGGICIWAPSY  174 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~---d~~v~vwd~~~--~~~~~~~~~~~~~~~v~~l~~sp~~~~~-la~g~~~~i~iw~~~~  174 (427)
                      .|.+++|||| +++++++.   +...+||.++.  .+... .+...  ..+...+|+|+++.+ ++++.++.+.+|+++ 
T Consensus        66 ~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~--~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-  140 (582)
T 3o4h_A           66 SVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV--KPMRILSGVDTGEAVVFTGATEDRVALYALD-  140 (582)
T ss_dssp             EECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS--CSBEEEEEEECSSCEEEEEECSSCEEEEEEE-
T ss_pred             ccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC--CCceeeeeCCCCCeEEEEecCCCCceEEEcc-
Confidence            6889999999 77777765   56677877765  32222 22222  234567899998664 555566777799987 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------------eEEe
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------------PIRR  234 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------------~~~~  234 (427)
                              ++              .  .......+ .   ..++|+|||++++...                    .+..
T Consensus       141 --------~g--------------~--~~~l~~~~-~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~~  192 (582)
T 3o4h_A          141 --------GG--------------G--LRELARLP-G---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS  192 (582)
T ss_dssp             --------TT--------------E--EEEEEEES-S---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEECC
T ss_pred             --------CC--------------c--EEEeecCC-C---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEeec
Confidence                    22              1  11111211 1   6888999998865211                    1223


Q ss_pred             ccCCeEEEEEccCCCEEEEEecCC--cEEEEEcCCCCccccccCCCCeeEEE--------ECCCCCEEEEEEcCCceeee
Q 014302          235 GFGGLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSSTSGFVTGAT--------WDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       235 ~~~~v~~~~~sp~g~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~--------~spdg~~l~~~~~~~~~i~~  304 (427)
                      +.+.+..++|||||++|+++..++  .|++||+.+++......+...+..++        |+|||..+++ ...++.+.+
T Consensus       193 ~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~-~~~~g~~~l  271 (582)
T 3o4h_A          193 GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVV-ARREGRSAV  271 (582)
T ss_dssp             SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECTTSCEEEE-EEETTEEEE
T ss_pred             CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcCCCcEEEE-EEcCCcEEE
Confidence            456688999999999999888888  89999999887763346666677777        9999955554 455557777


Q ss_pred             eeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      |.+ .+       ...         ...+.|.+++|+ +|+++++.   +.+..+..|.+|+...
T Consensus       272 ~~~-g~-------~~~---------~~~~~v~~~~~s-dg~~l~~~---s~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          272 FID-GE-------RVE---------APQGNHGRVVLW-RGKLVTSH---TSLSTPPRIVSLPSGE  315 (582)
T ss_dssp             EET-TE-------EEC---------CCSSEEEEEEEE-TTEEEEEE---EETTEEEEEEEETTCC
T ss_pred             EEE-CC-------eec---------cCCCceEEEEec-CCEEEEEE---cCCCCCCeEEEEcCCC
Confidence            777 21       000         112367899999 99988774   3333446788887653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.58  E-value=9e-14  Score=140.34  Aligned_cols=256  Identities=14%  Similarity=0.039  Sum_probs=151.9

Q ss_pred             ceeeeEEcCCCCEEEEE--eCCCeEEEEEccCCCCcceeeccCCcCCee---------EEEEc--cCCCceEEEecCCeE
Q 014302          101 DLQGVSWHQHKHIVAFI--SGSTQVIVRDYEDSGKDACILTSDSQRDVK---------VLEWR--PNGGRSLSVGCKGGI  167 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~--~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~---------~l~~s--p~~~~~la~g~~~~i  167 (427)
                      .|..++|++++-+++..  +.++...||.+...+  .......+...+.         ...|+  |||+.+|+.+.+...
T Consensus        25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~  102 (662)
T 3azo_A           25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG--AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQ  102 (662)
T ss_dssp             CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS--CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTC
T ss_pred             ccceeEEcCCeEEEEecCcccCCcEEEEEECCCC--CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCC
Confidence            68899999887677766  558899999874332  2223334445555         66676  999652555544344


Q ss_pred             EEEeccCC--CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEc
Q 014302          168 CIWAPSYP--GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWS  245 (427)
Q Consensus       168 ~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~s  245 (427)
                      .||.++..  +.      +              ....   +...           +          ...+...+..++||
T Consensus       103 ~l~~~~~~~~g~------~--------------~~~~---l~~~-----------~----------~~~~~~~~~~~~~s  138 (662)
T 3azo_A          103 RLYAFEPDAPGG------A--------------VPRP---LTPV-----------S----------AVGGGLRWADPVLL  138 (662)
T ss_dssp             CEEEECTTSTTC------C--------------CCEE---CSCC-----------C----------CSTTCEEEEEEEEE
T ss_pred             eEEEEcCCCCCC------C--------------CCEe---ccCC-----------c----------cCCCCccccCcEEC
Confidence            55655511  00      0              0000   0000           0          00023356788999


Q ss_pred             cCCCEEEEEecC----------CcEEEEEcCC------CCccccc-cCCCCeeEEEECCCCCEEEEEEcCC-------ce
Q 014302          246 PTGDYFFAAKFD----------GTFYLWETNT------WTSEPWS-STSGFVTGATWDPEGRMILLAFAGS-------LT  301 (427)
Q Consensus       246 p~g~~l~~~~~d----------g~v~iwd~~~------~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~-------~~  301 (427)
                      |||+.|++++.+          ..|++||+.+      ++...+. .+...+..++|||||++|++++.+.       ..
T Consensus       139 pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~  218 (662)
T 3azo_A          139 PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE  218 (662)
T ss_dssp             TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred             CCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence            999999977766          5799999987      5555555 5567788999999999999877543       46


Q ss_pred             eeeeeeCC-CCCCccccccccccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee
Q 014302          302 LGSIHFAS-KPPSLDAHLLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG  379 (427)
Q Consensus       302 i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~  379 (427)
                      |+++++.. ...  . ..       ..... +...+..++|+|||+++++   .+.++. ..|.+||+.++.+..+.+..
T Consensus       219 i~~~d~~~~g~~--~-~~-------~~l~~~~~~~~~~~~~spdg~l~~~---~~~~~~-~~l~~~~~~~~~~~~l~~~~  284 (662)
T 3azo_A          219 LKTARVTEDGRF--A-DT-------RTLLGGPEEAIAQAEWAPDGSLIVA---TDRTGW-WNLHRVDPATGAATQLCRRE  284 (662)
T ss_dssp             EEEEEECTTSCE--E-EE-------EEEEEETTBCEEEEEECTTSCEEEE---ECTTSS-CEEEEECTTTCCEEESSCCS
T ss_pred             EEEEEECCCCcc--c-cc-------EEeCCCCCceEcceEECCCCeEEEE---ECCCCC-eEEEEEECCCCceeeccccc
Confidence            78887763 200  0 00       01111 1347899999999996555   333321 25777777677665443211


Q ss_pred             -eeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          380 -FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       380 -~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                       .+..+........++|.|+   +.++.++.. |.+.+|.+-
T Consensus       285 ~~~~~p~w~~~~~~~~~~~~---~~~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          285 EEFAGPLWTPGMRWFAPLAN---GLIAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             SBSSCCCCSTTCCSEEECTT---SCEEEEEBS-SSCEEEEEE
T ss_pred             ccccCccccccCceEeEeCC---CEEEEEEEc-CccEEEEEE
Confidence             0001111111235677664   677887777 888888543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.57  E-value=2.6e-13  Score=126.70  Aligned_cols=209  Identities=12%  Similarity=0.115  Sum_probs=128.7

Q ss_pred             eeeeEEcCCCCE--EEEEe-------------CCCeEEEEEccCCCCcceeec---cCCcCCeeEEEEccCCCceEEEec
Q 014302          102 LQGVSWHQHKHI--VAFIS-------------GSTQVIVRDYEDSGKDACILT---SDSQRDVKVLEWRPNGGRSLSVGC  163 (427)
Q Consensus       102 V~~l~~sp~g~~--lat~~-------------~d~~v~vwd~~~~~~~~~~~~---~~~~~~v~~l~~sp~~~~~la~g~  163 (427)
                      +..++|+|+|++  ++++.             .++++.+|+++..+.....+.   ..+...+.+++|+|||+.++++..
T Consensus        85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~  164 (365)
T 1jof_A           85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence            556899999994  44553             689999999975322111111   134567899999999954444433


Q ss_pred             -CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEE
Q 014302          164 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSIL  242 (427)
Q Consensus       164 -~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~  242 (427)
                       ++.|.+|+++..        +              ....+..+.                        ...+...+..+
T Consensus       165 ~~~~v~~~~~~~~--------g--------------~~~~~~~~~------------------------~~~~g~~p~~~  198 (365)
T 1jof_A          165 TANKLWTHRKLAS--------G--------------EVELVGSVD------------------------APDPGDHPRWV  198 (365)
T ss_dssp             TTTEEEEEEECTT--------S--------------CEEEEEEEE------------------------CSSTTCCEEEE
T ss_pred             CCCEEEEEEECCC--------C--------------CEEEeeeEe------------------------cCCCCCCCCEe
Confidence             478999998600        0              000000000                        00123457889


Q ss_pred             EEccCCCEEEEEec-CCcEEEEEcC--CCCcc----cc--c-c----CCC------CeeEEE-ECCCCCEEEEEEcCCc-
Q 014302          243 KWSPTGDYFFAAKF-DGTFYLWETN--TWTSE----PW--S-S----TSG------FVTGAT-WDPEGRMILLAFAGSL-  300 (427)
Q Consensus       243 ~~sp~g~~l~~~~~-dg~v~iwd~~--~~~~~----~~--~-~----~~~------~v~~v~-~spdg~~l~~~~~~~~-  300 (427)
                      +|+|||++|++++. ++.|.+|++.  +++..    ..  . .    +..      .+..++ |+|||++|+++..... 
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~  278 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence            99999999987664 7899999875  34321    11  1 1    121      578999 9999999987665443 


Q ss_pred             ----eeeeeeeCCCCCCccccccccccccceee-ccCCceeEEEECC---CCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          301 ----TLGSIHFASKPPSLDAHLLPVDLPDIVSL-TGSQGIEKIAWDA---SGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       301 ----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~sp---~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                          .+.+|++... ..+..    +    .... .....+..++|+|   ||++|+++  +..+   +.|.||++...
T Consensus       279 ~~~~~i~v~~~~~~-g~~~~----~----~~~~~~~~~~~~~~a~sp~~~dg~~l~v~--~~~~---~~v~v~~~~~~  342 (365)
T 1jof_A          279 ELQGYIAGFKLRDC-GSIEK----Q----LFLSPTPTSGGHSNAVSPCPWSDEWMAIT--DDQE---GWLEIYRWKDE  342 (365)
T ss_dssp             TSCCEEEEEEECTT-SCEEE----E----EEEEECSSCCTTCCCEEECTTCTTEEEEE--CSSS---CEEEEEEEETT
T ss_pred             CCCCeEEEEEECCC-CCEEE----e----eeeeecCCCCcccceecCCCcCCCEEEEE--EcCC---CeEEEEEEchh
Confidence                7888887531 11100    0    0001 1122467889999   89999985  3223   56999999766

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.55  E-value=2.9e-12  Score=131.02  Aligned_cols=192  Identities=13%  Similarity=0.148  Sum_probs=114.8

Q ss_pred             eeeEEcCCCCEEEEEeCC---------CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          103 QGVSWHQHKHIVAFISGS---------TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d---------~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      ..++|||||++||+++.+         +.+.+||+.++  +. .....|...+..++||||| +.||.+.++.|.+|++.
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~--~~-~~l~~~~~~~~~~~~SPdG-~~la~~~~~~i~~~~~~  140 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR--QL-ITEERIPNNTQWVTWSPVG-HKLAYVWNNDIYVKIEP  140 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT--EE-CCSSCCCTTEEEEEECSST-TCEEEEETTEEEEESST
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC--cE-EEcccCCCcceeeEECCCC-CEEEEEECCeEEEEECC
Confidence            458999999999998876         55679999887  22 2334566789999999999 56676778899999986


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEee----hhcccCCCceeeeEeCCCCCCcccC--------------------
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVD----FLRSQNGEQITALSWGPDGRFPGLG--------------------  229 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~spdg~~l~~~--------------------  229 (427)
                       .+....+...           +........    ............+.|||||+.++..                    
T Consensus       141 -~~~~~~lt~~-----------g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~  208 (740)
T 4a5s_A          141 -NLPSYRITWT-----------GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL  208 (740)
T ss_dssp             -TSCCEECCSC-----------CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred             -CCceEEEcCC-----------CCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCC
Confidence             2221111110           000000000    0000001122346677777653311                    


Q ss_pred             ------------------------------------ceEEe--------ccCCeEEEEEccCCCEEEEEec----CCcEE
Q 014302          230 ------------------------------------TPIRR--------GFGGLSILKWSPTGDYFFAAKF----DGTFY  261 (427)
Q Consensus       230 ------------------------------------~~~~~--------~~~~v~~~~~sp~g~~l~~~~~----dg~v~  261 (427)
                                                          ...+.        +...+..++|||||+.++....    +..|+
T Consensus       209 ~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~  288 (740)
T 4a5s_A          209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMD  288 (740)
T ss_dssp             SSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEE
T ss_pred             CCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEE
Confidence                                                00010        2223677899999997774332    23699


Q ss_pred             EEEcCCCC----cc---cc--ccCCCCee-----EEEECCCCCEEE-EEEcCCc--eeeeeeeCCC
Q 014302          262 LWETNTWT----SE---PW--SSTSGFVT-----GATWDPEGRMIL-LAFAGSL--TLGSIHFASK  310 (427)
Q Consensus       262 iwd~~~~~----~~---~~--~~~~~~v~-----~v~~spdg~~l~-~~~~~~~--~i~~~~~~~~  310 (427)
                      +||+.+++    +.   ..  ..+...+.     .++|+|||+.++ +.+..++  .|+.+++...
T Consensus       289 ~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~  354 (740)
T 4a5s_A          289 ICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK  354 (740)
T ss_dssp             EEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred             EEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence            99999887    32   22  24555554     789999999887 6655543  5666665543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.51  E-value=3.6e-13  Score=126.54  Aligned_cols=218  Identities=9%  Similarity=0.080  Sum_probs=123.6

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEE--ccCCCceEEEe-----------------
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEW--RPNGGRSLSVG-----------------  162 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~--sp~~~~~la~g-----------------  162 (427)
                      +..++|+|||++|++++.++.+++||+..+  +...+...+...+....|  +|++ .+++..                 
T Consensus        83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           83 TFGGFLSPDDDALFYVKDGRNLMRVDLATL--EENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             SSSCEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHH
T ss_pred             ccceEEcCCCCEEEEEeCCCeEEEEECCCC--cceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhh
Confidence            446789999999999999999999999887  333333444444544444  8998 454421                 


Q ss_pred             ------cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccC------
Q 014302          163 ------CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLG------  229 (427)
Q Consensus       163 ------~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~------  229 (427)
                            .+..|.+|++.         ++              +...   +..+ ...+..++|+| ||+.++..      
T Consensus       160 ~~~~~~~~~~l~~~d~~---------~g--------------~~~~---l~~~-~~~~~~~~~sp~dg~~l~~~~~~~~~  212 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLK---------TG--------------ESTV---ILQE-NQWLGHPIYRPYDDSTVAFCHEGPHD  212 (388)
T ss_dssp             HHGGGCCCEEEEEEETT---------TC--------------CEEE---EEEE-SSCEEEEEEETTEEEEEEEEECSCTT
T ss_pred             hhhccCCcceEEEEECC---------CC--------------ceEE---eecC-CccccccEECCCCCCEEEEEEecCCC
Confidence                  22557778776         11              1111   1111 34567788888 77653210      


Q ss_pred             ----ce------------EEecc--CCeEEEEEccCCCEEEE-EecCC----cEEEEEcCCCCccccccCCC------Ce
Q 014302          230 ----TP------------IRRGF--GGLSILKWSPTGDYFFA-AKFDG----TFYLWETNTWTSEPWSSTSG------FV  280 (427)
Q Consensus       230 ----~~------------~~~~~--~~v~~~~~sp~g~~l~~-~~~dg----~v~iwd~~~~~~~~~~~~~~------~v  280 (427)
                          ..            +..+.  ..+..++|||||+.|+. +..++    .|++||+.+++...+.....      ..
T Consensus       213 ~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~  292 (388)
T 3pe7_A          213 LVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNY  292 (388)
T ss_dssp             TSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECT
T ss_pred             CCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecC
Confidence                00            11111  13667889999998874 33322    39999999887543322111      02


Q ss_pred             eEEEECCCCCEEEEEE--------cCCceeeeeeeCCCCC-CccccccccccccceeeccCCceeEEEECCCCCEEEEEE
Q 014302          281 TGATWDPEGRMILLAF--------AGSLTLGSIHFASKPP-SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSY  351 (427)
Q Consensus       281 ~~v~~spdg~~l~~~~--------~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~  351 (427)
                      ..++|+|||+.|++..        .....|++|++..... .+..+......   ........+..++|+|||++|+.+.
T Consensus       293 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          293 DGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKV---FEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             TSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCC---BTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             CCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccc---cccccccCCCCccCCCCCCEEEEEe
Confidence            2347999999988754        3344777777765411 11111000000   0000001367889999999999864


Q ss_pred             e
Q 014302          352 K  352 (427)
Q Consensus       352 ~  352 (427)
                      .
T Consensus       370 ~  370 (388)
T 3pe7_A          370 D  370 (388)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.51  E-value=3.7e-12  Score=129.63  Aligned_cols=207  Identities=10%  Similarity=0.031  Sum_probs=124.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCC-----eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCe---------
Q 014302          101 DLQGVSWHQHKHIVAFISGST-----QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG---------  166 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~-----~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~---------  166 (427)
                      .+..++|||||++||.+..++     +|++||+.++  +.......+ ..+.+++|+|||+.++.+..++.         
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg--~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~  202 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--KELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET  202 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--EEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--CCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccc
Confidence            578999999999999876543     8999999887  332222222 23678999999966666665543         


Q ss_pred             -------EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCe
Q 014302          167 -------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGL  239 (427)
Q Consensus       167 -------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v  239 (427)
                             |.+|++.         ++              ....             .+.+..           ..+...+
T Consensus       203 ~~~~~~~v~~~~l~---------t~--------------~~~~-------------~~v~~~-----------~~~~~~~  235 (710)
T 2xdw_A          203 STNLHQKLYYHVLG---------TD--------------QSED-------------ILCAEF-----------PDEPKWM  235 (710)
T ss_dssp             CCCCCCEEEEEETT---------SC--------------GGGC-------------EEEECC-----------TTCTTCE
T ss_pred             ccCCCCEEEEEECC---------CC--------------cccc-------------eEEecc-----------CCCCeEE
Confidence                   6677765         11              0000             000000           0012346


Q ss_pred             EEEEEccCCCEEEEEec-----CCcEEEEEcCC------CC--ccccccCCCCeeEEEECCCCCEEEEEEcCCc---eee
Q 014302          240 SILKWSPTGDYFFAAKF-----DGTFYLWETNT------WT--SEPWSSTSGFVTGATWDPEGRMILLAFAGSL---TLG  303 (427)
Q Consensus       240 ~~~~~sp~g~~l~~~~~-----dg~v~iwd~~~------~~--~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~---~i~  303 (427)
                      ..+.|||||++|+..+.     +..|++||+.+      +.  ...+..+...+.. .|+|+|+.|++.+..+.   .|+
T Consensus       236 ~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~  314 (710)
T 2xdw_A          236 GGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLI  314 (710)
T ss_dssp             EEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEE
T ss_pred             EEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEE
Confidence            67889999999986554     56899999986      42  2333344444544 58899999988776543   566


Q ss_pred             eeeeCCCCCCccccccccccccceeeccC--CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          304 SIHFASKPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      .+++......   .     .  .....+.  ..+..++|++++.++++...++.    ..|.+|++.++..
T Consensus       315 ~~d~~~~~~~---~-----~--~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~----~~l~~~~~~~g~~  371 (710)
T 2xdw_A          315 NIDFTDPEES---K-----W--KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK----NTLQLHDLATGAL  371 (710)
T ss_dssp             EEETTSCCGG---G-----C--EEEECCCSSCEEEEEEEETTTEEEEEEEETTE----EEEEEEETTTCCE
T ss_pred             EEeCCCCCcc---c-----c--eeccCCCCCCeEEEEEEEcCCEEEEEEEECCE----EEEEEEECCCCCE
Confidence            6666543100   0     0  0111111  25788999976666655322221    4578888866654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.49  E-value=3e-11  Score=108.39  Aligned_cols=238  Identities=10%  Similarity=0.065  Sum_probs=148.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec-----cCCcCCeeEEEEc-cCCCceEEEec--CCeEEEEec
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT-----SDSQRDVKVLEWR-PNGGRSLSVGC--KGGICIWAP  172 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~-----~~~~~~v~~l~~s-p~~~~~la~g~--~~~i~iw~~  172 (427)
                      .+.+++++++|+++++...++.|++||.+..  ......     ..+...+.++++. +++ .++++..  ++.|.+|+.
T Consensus        31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~--~~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~  107 (286)
T 1q7f_A           31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR--FKFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQ  107 (286)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTSC--EEEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEEEECT
T ss_pred             CCceEEECCCCCEEEEECCCCEEEEECCCCc--EEEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEEEECC
Confidence            5789999999998888888999999987633  121111     1244578899994 666 6666653  688999985


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF  252 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~  252 (427)
                      +          +                .....+..                         .+...+..++++|+|+.++
T Consensus       108 ~----------g----------------~~~~~~~~-------------------------~~~~~~~~i~~~~~g~l~v  136 (286)
T 1q7f_A          108 Y----------G----------------QFVRKFGA-------------------------TILQHPRGVTVDNKGRIIV  136 (286)
T ss_dssp             T----------S----------------CEEEEECT-------------------------TTCSCEEEEEECTTSCEEE
T ss_pred             C----------C----------------cEEEEecC-------------------------ccCCCceEEEEeCCCCEEE
Confidence            4          0                00110100                         0123567899999998777


Q ss_pred             EEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeec
Q 014302          253 AAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  330 (427)
Q Consensus       253 ~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (427)
                      +...++.|++||........+.  .+...+..++++++|+.++ +...++.+..++......   .... .       ..
T Consensus       137 ~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~~g~~~---~~~~-~-------~g  204 (286)
T 1q7f_A          137 VECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFI-SDNRAHCVKVFNYEGQYL---RQIG-G-------EG  204 (286)
T ss_dssp             EETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEE-EEGGGTEEEEEETTCCEE---EEES-C-------TT
T ss_pred             EECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEE-EECCCCEEEEEcCCCCEE---EEEc-c-------CC
Confidence            7777889999996533222222  3445689999999998555 445455777776533200   0000 0       00


Q ss_pred             cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302          331 GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS  410 (427)
Q Consensus       331 ~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~  410 (427)
                      ....+..++++++|+++++   +..+.  +.|.+|+.. +..+...     ........+..+++.|+   |.++... .
T Consensus       205 ~~~~p~~i~~d~~G~l~v~---~~~~~--~~i~~~~~~-g~~~~~~-----~~~~~~~~~~~i~~~~~---g~l~vs~-~  269 (286)
T 1q7f_A          205 ITNYPIGVGINSNGEILIA---DNHNN--FNLTIFTQD-GQLISAL-----ESKVKHAQCFDVALMDD---GSVVLAS-K  269 (286)
T ss_dssp             TSCSEEEEEECTTCCEEEE---ECSSS--CEEEEECTT-SCEEEEE-----EESSCCSCEEEEEEETT---TEEEEEE-T
T ss_pred             ccCCCcEEEECCCCCEEEE---eCCCC--EEEEEECCC-CCEEEEE-----cccCCCCcceeEEECCC---CcEEEEC-C
Confidence            0136789999999988777   33321  269999964 3333221     11112223668889885   6666664 6


Q ss_pred             CceEEEEec
Q 014302          411 SGFCCTYPL  419 (427)
Q Consensus       411 ~g~i~~~~~  419 (427)
                      +++|.+|.+
T Consensus       270 ~~~v~v~~~  278 (286)
T 1q7f_A          270 DYRLYIYRY  278 (286)
T ss_dssp             TTEEEEEEC
T ss_pred             CCeEEEEEc
Confidence            899999985

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.46  E-value=7.4e-11  Score=108.30  Aligned_cols=241  Identities=13%  Similarity=0.182  Sum_probs=144.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-----CeEEEEeccCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-----~~i~iw~~~~~  175 (427)
                      .+.+++|+|+|++++++..++.|.+||...+  ........+...+.+++|+|+| .++++...     +.|.+|+.+  
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~--  120 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATEN--  120 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTT--
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCCC--cEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCC--
Confidence            4678999999998888888999999988765  3333333456679999999999 56555543     478888876  


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK  255 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  255 (427)
                             ++              .....  +...                        .....+..++++|+|+.+++..
T Consensus       121 -------~~--------------~~~~~--~~~~------------------------~~~~~~~~i~~d~~g~l~v~~~  153 (333)
T 2dg1_A          121 -------GD--------------NLQDI--IEDL------------------------STAYCIDDMVFDSKGGFYFTDF  153 (333)
T ss_dssp             -------SC--------------SCEEE--ECSS------------------------SSCCCEEEEEECTTSCEEEEEC
T ss_pred             -------CC--------------EEEEE--EccC------------------------ccCCcccceEECCCCCEEEEec
Confidence                   11              10000  0000                        0123577888999998776554


Q ss_pred             c------CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceee
Q 014302          256 F------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       256 ~------dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      .      .+.|..||..+.+...+......+..++|+|+|+.|+++....+.++.+++......+.. ...   ......
T Consensus       154 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~-~~~---~~~~~~  229 (333)
T 2dg1_A          154 RGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP-FGA---TIPYYF  229 (333)
T ss_dssp             CCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE-EEE---EEEEEC
T ss_pred             cccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccc-ccc---eEEEec
Confidence            3      245666665544443333333457899999999988777666668888887532111100 000   000001


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCC----CCCceeEEeccCCCCCcee
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGD----NPKPVAFSFHDKFKQGPLL  405 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~f~~~~~~g~~l  405 (427)
                      .....+..++++++|+++++..   .+   +.|.+||.. +..+..     +..+..    ...+.+++|.|+   +..|
T Consensus       230 ~~~~~~~~i~~d~~G~l~v~~~---~~---~~v~~~d~~-g~~~~~-----~~~~~~~~g~~~~~~~~~~~~d---g~~L  294 (333)
T 2dg1_A          230 TGHEGPDSCCIDSDDNLYVAMY---GQ---GRVLVFNKR-GYPIGQ-----ILIPGRDEGHMLRSTHPQFIPG---TNQL  294 (333)
T ss_dssp             CSSSEEEEEEEBTTCCEEEEEE---TT---TEEEEECTT-SCEEEE-----EECTTGGGTCSCBCCEEEECTT---SCEE
T ss_pred             CCCCCCCceEECCCCCEEEEEc---CC---CEEEEECCC-CCEEEE-----EEcCCCccccccCcceEEECCC---CCEE
Confidence            1123678899999999777632   22   459999984 443322     111111    113567888764   5556


Q ss_pred             EEEeeCc
Q 014302          406 SVCWSSG  412 (427)
Q Consensus       406 ~v~~~~g  412 (427)
                      .++..+|
T Consensus       295 ~v~~~~g  301 (333)
T 2dg1_A          295 IICSNDI  301 (333)
T ss_dssp             EEEEECG
T ss_pred             EEEeCcc
Confidence            6666664

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.46  E-value=6.2e-11  Score=105.23  Aligned_cols=244  Identities=13%  Similarity=0.059  Sum_probs=154.1

Q ss_pred             ceeeeEEcCCCCEEE-EEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~la-t~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      ...+++++++|++++ +.+.++.|.+|+....  ........+...+.++++.+++ .++++..++.|.+|+.+      
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~i~~~d~~------   95 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--GTTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAG------   95 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-------EECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTT------
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCc--ccceEeeCCcCCcceeEECCCC-CEEEEcCCCEEEEEeCC------
Confidence            568899999999766 4467889999876544  2222222333568899999998 46555557788889875      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                         ..              ....   +..                         ........++++++|+.+++...++.
T Consensus        96 ---~~--------------~~~~---~~~-------------------------~~~~~p~~i~~~~~g~l~v~~~~~~~  130 (270)
T 1rwi_B           96 ---SN--------------NQTV---LPF-------------------------DGLNYPEGLAVDTQGAVYVADRGNNR  130 (270)
T ss_dssp             ---CS--------------CCEE---CCC-------------------------CSCSSEEEEEECTTCCEEEEEGGGTE
T ss_pred             ---Cc--------------eEee---eec-------------------------CCcCCCcceEECCCCCEEEEECCCCE
Confidence               00              0000   000                         01235678999999987667777889


Q ss_pred             EEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          260 FYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       260 v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      |.+|+..+....... .....+..++++++|+.++ +....+.+..++........    .        .......+..+
T Consensus       131 i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v-~~~~~~~i~~~~~~~~~~~~----~--------~~~~~~~p~~i  197 (270)
T 1rwi_B          131 VVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYV-TDTDNNRVVKLEAESNNQVV----L--------PFTDITAPWGI  197 (270)
T ss_dssp             EEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEE-EEGGGTEEEEECTTTCCEEE----C--------CCSSCCSEEEE
T ss_pred             EEEEECCCceeEeeccccCCCceeEEEeCCCCEEE-EECCCCEEEEEecCCCceEe----e--------cccCCCCceEE
Confidence            999976554432222 3334678999999998554 44444567766654431100    0        00111367899


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      +++++|..+++   ...+   +.|.+|+..........       ......+..+++.++   |.++...+.+++|.+|.
T Consensus       198 ~~d~~g~l~v~---~~~~---~~v~~~~~~~~~~~~~~-------~~~~~~p~~i~~~~~---g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          198 AVDEAGTVYVT---EHNT---NQVVKLLAGSTTSTVLP-------FTGLNTPLAVAVDSD---RTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             EECTTCCEEEE---ETTT---SCEEEECTTCSCCEECC-------CCSCSCEEEEEECTT---CCEEEEEGGGTEEEEEC
T ss_pred             EECCCCCEEEE---ECCC---CcEEEEcCCCCcceeec-------cCCCCCceeEEECCC---CCEEEEECCCCEEEEEc
Confidence            99999976665   3333   45999998765443211       111134778888875   67888888999999999


Q ss_pred             ccccCCCCC
Q 014302          419 LIFRSHLLP  427 (427)
Q Consensus       419 ~~~~~~~~~  427 (427)
                      +-.+.++.+
T Consensus       262 ~~~~~~~~~  270 (270)
T 1rwi_B          262 SLEHHHHHH  270 (270)
T ss_dssp             CCGGGSCCC
T ss_pred             CCCccccCC
Confidence            988887753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.45  E-value=3.2e-11  Score=110.77  Aligned_cols=253  Identities=12%  Similarity=0.097  Sum_probs=155.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCC------------------------CeEEEEEccCCCCcceee-ccCCcCCeeEEEEccCC
Q 014302          101 DLQGVSWHQHKHIVAFISGS------------------------TQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNG  155 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d------------------------~~v~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~  155 (427)
                      .+.+++++|+|+++++...+                        ++|.+||..++  ..... ...+-.....++++|+|
T Consensus        25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA--EILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC--CEEEEECTTTCSSEEEEEECTTS
T ss_pred             CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC--eEEeccCCCccCCceEEEECCCC
Confidence            68999999999999888777                        47899987765  22222 22344578899999999


Q ss_pred             CceEEEec-CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEe
Q 014302          156 GRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRR  234 (427)
Q Consensus       156 ~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~  234 (427)
                       .++++.. ++.|.+|+.+  +..                      ..+..+...          ...|.       -..
T Consensus       103 -~l~v~d~~~~~v~~~~~~--g~~----------------------~~~~~~~~~----------~~~g~-------~~~  140 (329)
T 3fvz_A          103 -NYWVTDVALHQVFKLDPH--SKE----------------------GPLLILGRS----------MQPGS-------DQN  140 (329)
T ss_dssp             -CEEEEETTTTEEEEECTT--CSS----------------------CCSEEESBT----------TBCCC-------STT
T ss_pred             -CEEEEECCCCEEEEEeCC--CCe----------------------EEEEEeccc----------CCCCC-------Ccc
Confidence             4666654 4889999875  000                      000000000          00000       001


Q ss_pred             ccCCeEEEEEcc-CCCEEEEEe-cCCcEEEEEcCCCCccc-ccc----------CCCCeeEEEECCCCCEEEEEEcCCce
Q 014302          235 GFGGLSILKWSP-TGDYFFAAK-FDGTFYLWETNTWTSEP-WSS----------TSGFVTGATWDPEGRMILLAFAGSLT  301 (427)
Q Consensus       235 ~~~~v~~~~~sp-~g~~l~~~~-~dg~v~iwd~~~~~~~~-~~~----------~~~~v~~v~~spdg~~l~~~~~~~~~  301 (427)
                      +......++++| +|..+++.+ .++.|++||. .++... +..          +-.....++++|++..|+++......
T Consensus       141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~  219 (329)
T 3fvz_A          141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR  219 (329)
T ss_dssp             CCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE
Confidence            233577899999 777777776 6899999994 343322 211          12347899999995566666666668


Q ss_pred             eeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCC----CcceeEEEEEEeccCceEEEee
Q 014302          302 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISLSL  377 (427)
Q Consensus       302 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~----d~~~g~i~vwd~~~~~~~~~~~  377 (427)
                      |.+|+..+..  +....        ........+.+++|+| +..+++   .+.    +....+|++|++.++.++....
T Consensus       220 I~~~~~~~G~--~~~~~--------~~~~~~~~~~~~~~~p-g~~~~~---~g~~~v~~~~~~~v~~~~~~~g~~~~~~~  285 (329)
T 3fvz_A          220 IQCFKTDTKE--FVREI--------KHASFGRNVFAISYIP-GFLFAV---NGKPYFGDQEPVQGFVMNFSSGEIIDVFK  285 (329)
T ss_dssp             EEEEETTTCC--EEEEE--------CCTTTTTCEEEEEEET-TEEEEE---ECCCCTTCSCCCCEEEEETTTCCEEEEEC
T ss_pred             EEEEECCCCc--EEEEE--------eccccCCCcceeeecC-CEEEEe---CCCEEeccCCCcEEEEEEcCCCeEEEEEc
Confidence            8888776321  10000        0011233678899999 433333   211    1111469999999888764321


Q ss_pred             eeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          378 IGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       378 ~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .    .......|..+++.|+   |.++...+.+++|..|++
T Consensus       286 ~----~~~~~~~p~~ia~~~d---G~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          286 P----VRKHFDMPHDIVASED---GTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             C----SSSCCSSEEEEEECTT---SEEEEEESSSCCEEEEEE
T ss_pred             C----CCCccCCeeEEEECCC---CCEEEEECCCCEEEEEeC
Confidence            0    1222334778999885   788999999999999985

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.43  E-value=3.4e-12  Score=120.00  Aligned_cols=231  Identities=10%  Similarity=0.083  Sum_probs=125.9

Q ss_pred             eeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeE-------------------EEEccCCCceEEE---
Q 014302          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKV-------------------LEWRPNGGRSLSV---  161 (427)
Q Consensus       104 ~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~-------------------l~~sp~~~~~la~---  161 (427)
                      .+.|+|||++|++++.++.+++|++..+  ....+...+......                   ++|+|+++.++..   
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~  162 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETL--EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY  162 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTC--CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCC--CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec
Confidence            4789999999999999999999998876  333333323322222                   3567777433332   


Q ss_pred             --ecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCccc----------
Q 014302          162 --GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGL----------  228 (427)
Q Consensus       162 --g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~----------  228 (427)
                        ..+..|.+|++. .+.                      ...+.   . ....+..+.|+| +|+.++.          
T Consensus       163 ~~~~~~~l~~~d~~-~g~----------------------~~~~~---~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~  215 (396)
T 3c5m_A          163 HTNPTCRLIKVDIE-TGE----------------------LEVIH---Q-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVD  215 (396)
T ss_dssp             HTCCCEEEEEEETT-TCC----------------------EEEEE---E-ESSCEEEEEEETTEEEEEEEEECSCSSSCS
T ss_pred             cCCCcceEEEEECC-CCc----------------------EEeec---c-CCcccccceECCCCCCEEEEEecCCCCCCC
Confidence              233567778876 111                      11111   1 133455566666 4442110          


Q ss_pred             ----------CceEE--ec--cCCeEEEEEccCCCEEEEEecC-----CcEEEEEcCCCCccccccCCCCeeEEEECC-C
Q 014302          229 ----------GTPIR--RG--FGGLSILKWSPTGDYFFAAKFD-----GTFYLWETNTWTSEPWSSTSGFVTGATWDP-E  288 (427)
Q Consensus       229 ----------~~~~~--~~--~~~v~~~~~sp~g~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~v~~v~~sp-d  288 (427)
                                +....  .+  ...+..++|+|||++|+..+.+     +.|++||+.+++......... .. +.|+| |
T Consensus       216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~d  293 (396)
T 3c5m_A          216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFD  293 (396)
T ss_dssp             CCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSS
T ss_pred             ceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCC
Confidence                      00001  11  1136678999999988855443     449999998876544332222 33 89999 9


Q ss_pred             CCEEEEEEc---------------CCceeeeeeeCCCCC-CccccccccccccceeeccCCceeEEEECCCCCEEEEEEe
Q 014302          289 GRMILLAFA---------------GSLTLGSIHFASKPP-SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK  352 (427)
Q Consensus       289 g~~l~~~~~---------------~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~  352 (427)
                      |+.++++..               .+..++.|++..... .+..+...+..   ........+..++|+|||++|+++..
T Consensus       294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~s~dg~~l~~~s~  370 (396)
T 3c5m_A          294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDV---LDGDRQITHPHPSFTPNDDGVLFTSD  370 (396)
T ss_dssp             SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCC---BTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred             CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccc---ccccccCCCCCceEccCCCeEEEEec
Confidence            998887542               234677777655421 11111000000   00000002566899999999988643


Q ss_pred             cCCCcceeEEEEEEeccCc
Q 014302          353 GGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       353 ~~~d~~~g~i~vwd~~~~~  371 (427)
                      ....   ..|+++++..+.
T Consensus       371 ~~~~---~~l~~~~~~~~~  386 (396)
T 3c5m_A          371 FEGV---PAIYIADVPESY  386 (396)
T ss_dssp             TTSS---CEEEEEECCTTC
T ss_pred             CCCC---ceEEEEEEcccc
Confidence            3222   235555555544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.41  E-value=8.6e-11  Score=106.04  Aligned_cols=229  Identities=10%  Similarity=0.101  Sum_probs=142.2

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      ...+++|+|+|+ +++++..++.|.+|+....   . .....+...+.+++|+|+| .++++.. ++.|.+|+..     
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~-~~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~-----   98 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---L-SPEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREP-----   98 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---E-EEEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECST-----
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---e-EEEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCC-----
Confidence            467899999998 7778888999999998764   2 2223455678999999999 5666654 4889999885     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE----
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA----  254 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~----  254 (427)
                          ++              ......  ...            .      +    .....+..++++|+|+++++.    
T Consensus        99 ----~g--------------~~~~~~--~~~------------~------~----~~~~~~~~i~~d~~G~l~vtd~~~g  136 (296)
T 3e5z_A           99 ----GG--------------EWESIA--DSF------------E------G----KKLNSPNDVCLAPDGSLWFSDPTYG  136 (296)
T ss_dssp             ----TC--------------CEEEEE--CEE------------T------T----EECCCCCCEEECTTSCEEEEECSHH
T ss_pred             ----CC--------------cEEEEe--ecc------------C------C----CCCCCCCCEEECCCCCEEEECCccc
Confidence                11              111000  000            0      0    012245678889999877763    


Q ss_pred             ec-------------CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc-cccccc
Q 014302          255 KF-------------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL-DAHLLP  320 (427)
Q Consensus       255 ~~-------------dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~-~~~~~~  320 (427)
                      +.             .+.|..++.. ++......+......++|+|+|+.+ ++....+.++.+++... ..+ ..... 
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~-g~~~~~~~~-  212 (296)
T 3e5z_A          137 IDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNAR-GETEYQGVH-  212 (296)
T ss_dssp             HHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSS-SCEEEEEEE-
T ss_pred             cccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCC-CcCcCCCeE-
Confidence            21             2355555544 3333334556677899999999999 56666668888887621 111 00000 


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec-cCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH-DKF  399 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~  399 (427)
                            . ....+.+..++++++|+++++.  +      +.|.+|+.. +..+.     .+..+..   +.+++|. |  
T Consensus       213 ------~-~~~~~~p~~i~~d~~G~l~v~~--~------~~v~~~~~~-g~~~~-----~~~~~~~---~~~~~f~~~--  266 (296)
T 3e5z_A          213 ------F-TVEPGKTDGLRVDAGGLIWASA--G------DGVHVLTPD-GDELG-----RVLTPQT---TSNLCFGGP--  266 (296)
T ss_dssp             ------E-CCSSSCCCSEEEBTTSCEEEEE--T------TEEEEECTT-SCEEE-----EEECSSC---CCEEEEEST--
T ss_pred             ------e-eCCCCCCCeEEECCCCCEEEEc--C------CeEEEECCC-CCEEE-----EEECCCC---ceeEEEECC--
Confidence                  0 0123356789999999977663  2      459999986 44432     2222222   5578884 4  


Q ss_pred             CCCceeEEEeeCc
Q 014302          400 KQGPLLSVCWSSG  412 (427)
Q Consensus       400 ~~g~~l~v~~~~g  412 (427)
                       ++..|.++..+|
T Consensus       267 -d~~~L~v~t~~~  278 (296)
T 3e5z_A          267 -EGRTLYMTVSTE  278 (296)
T ss_dssp             -TSCEEEEEETTE
T ss_pred             -CCCEEEEEcCCe
Confidence             366788886654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.40  E-value=3e-11  Score=111.50  Aligned_cols=221  Identities=14%  Similarity=0.146  Sum_probs=121.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCC---Ce--EEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-----------
Q 014302          101 DLQGVSWHQHKHIVAFISGS---TQ--VIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-----------  164 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d---~~--v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-----------  164 (427)
                      .+..++|||||++||+.+.+   +.  |.+|++..+  +...+...+ . +.+++|+|||+.++.++.+           
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g--~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~  135 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL--SSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED  135 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT--EEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC--ceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence            57889999999999987654   34  555566554  333333333 3 9999999999555555432           


Q ss_pred             ----------------CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc
Q 014302          165 ----------------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL  228 (427)
Q Consensus       165 ----------------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  228 (427)
                                      ..|.+|++.         +                                       |+.+  
T Consensus       136 ~~~~~~~g~~~~~~~~~~l~~~d~~---------~---------------------------------------~~~~--  165 (347)
T 2gop_A          136 DVPAWFDDLGFFDGEKTTFWIFDTE---------S---------------------------------------EEVI--  165 (347)
T ss_dssp             -CCCC---------CEEEEEEEETT---------T---------------------------------------TEEE--
T ss_pred             ccceeecCcccccCccceEEEEECC---------C---------------------------------------CeEE--
Confidence                            123333332         0                                       0000  


Q ss_pred             CceEEeccCCeEEEEEccCCCEEEEEecCC-------cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC--
Q 014302          229 GTPIRRGFGGLSILKWSPTGDYFFAAKFDG-------TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--  299 (427)
Q Consensus       229 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg-------~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~--  299 (427)
                       ..+.. . .+..++|+||| .++++..+.       ...||.+.+++...+..+ ..+..+  +|||++|++++...  
T Consensus       166 -~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          166 -EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             -EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred             -eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence             01222 2 56788999999 666665542       445555444443333334 444444  99999998876543  


Q ss_pred             -----ceeeeeeeCCCCCCccccccccccccceeeccCCceeE-EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          300 -----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK-IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       300 -----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                           ..++.++  ...  .    ..+      ...+...+.. +.|+ || +++++   +.+   +.++|| +.++...
T Consensus       239 ~~~~~~~l~~~d--~~~--~----~~l------~~~~~~~~~~~~~~s-dg-~~~~~---~~~---~~~~l~-~~~g~~~  295 (347)
T 2gop_A          239 YMSEHNKLYIYD--GKE--V----MGI------LDEVDRGVGQAKIKD-GK-VYFTL---FEE---GSVNLY-IWDGEIK  295 (347)
T ss_dssp             CCCSSCEEEEEC--SSC--E----EES------STTCCSEEEEEEEET-TE-EEEEE---EET---TEEEEE-EESSSEE
T ss_pred             CccccceEEEEC--CCc--e----Eec------cccCCcccCCccEEc-Cc-EEEEE---ecC---CcEEEE-EcCCceE
Confidence                 2455555  211  0    000      0011235675 8999 88 66663   333   458899 8755543


Q ss_pred             EEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE-EEEe
Q 014302          374 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC-CTYP  418 (427)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i-~~~~  418 (427)
                      .+.     .+   .....+++|.|     .++.++.++++. .+|.
T Consensus       296 ~~~-----~~---~~~v~~~~~s~-----~~~~~~~~~~~~~~l~~  328 (347)
T 2gop_A          296 PIA-----KG---RHWIMGFDVDE-----IVVYLKETATRLRELFT  328 (347)
T ss_dssp             EEE-----CS---SSEEEEEEESS-----SEEEEEECSSSCCEEEE
T ss_pred             EEe-----cC---CCeEEeeeeeC-----cEEEEEcCCCChHHheE
Confidence            222     11   11234667766     355566566654 4543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.39  E-value=4.5e-11  Score=109.73  Aligned_cols=240  Identities=13%  Similarity=0.102  Sum_probs=147.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      .|.+++|++++..++..+.++.+++|.   .  ........+...+.+++|+|++ .+++++. ++.|.+|+.+      
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~------   74 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTIT---A--EPWLEISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPE------   74 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEEE---C--EEEEEEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTT------
T ss_pred             ccceeeecCCccceeEEeecccCcccc---c--ceeEEEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCC------
Confidence            477889999998877777888888882   2  1223333455678999999999 5766654 4889999876      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC--
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD--  257 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--  257 (427)
                         ++              .....                            ...+...+.+++|+|+|+++++...+  
T Consensus        75 ---~~--------------~~~~~----------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~~~  109 (333)
T 2dg1_A           75 ---TK--------------EIKRP----------------------------FVSHKANPAAIKIHKDGRLFVCYLGDFK  109 (333)
T ss_dssp             ---TC--------------CEEEE----------------------------EECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred             ---CC--------------cEEEE----------------------------eeCCCCCcceEEECCCCcEEEEeCCCCC
Confidence               11              10000                            00123467889999999877776655  


Q ss_pred             --CcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcC-----CceeeeeeeCCCCCCccccccccccccce
Q 014302          258 --GTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAG-----SLTLGSIHFASKPPSLDAHLLPVDLPDIV  327 (427)
Q Consensus       258 --g~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
                        +.|.+||..+.....+.   .....+..++++|+|+.+++....     .+.++.++.....  +.           .
T Consensus       110 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~-----------~  176 (333)
T 2dg1_A          110 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VT-----------P  176 (333)
T ss_dssp             SCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EE-----------E
T ss_pred             CCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EE-----------E
Confidence              68999998877654222   244578999999999877754321     2344444332211  10           0


Q ss_pred             eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc-CceEE-EeeeeeeeCCCCCCCceeEEeccCCCCCcee
Q 014302          328 SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR-TPLIS-LSLIGFIRGPGDNPKPVAFSFHDKFKQGPLL  405 (427)
Q Consensus       328 ~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l  405 (427)
                      .......+..++|+|+|++|.++  ...+   +.|.+|++.. +..+. +.......... ...+..+++.++   |.++
T Consensus       177 ~~~~~~~~~~i~~~~dg~~l~v~--~~~~---~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~---G~l~  247 (333)
T 2dg1_A          177 IIQNISVANGIALSTDEKVLWVT--ETTA---NRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSD---DNLY  247 (333)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEE--EGGG---TEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTT---CCEE
T ss_pred             eecCCCcccceEECCCCCEEEEE--eCCC---CeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECCC---CCEE
Confidence            00111257889999999987764  2222   4599999964 33221 11111111111 123556778764   6676


Q ss_pred             EEEeeCceEEEEec
Q 014302          406 SVCWSSGFCCTYPL  419 (427)
Q Consensus       406 ~v~~~~g~i~~~~~  419 (427)
                      ...+.++.|.+|+.
T Consensus       248 v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          248 VAMYGQGRVLVFNK  261 (333)
T ss_dssp             EEEETTTEEEEECT
T ss_pred             EEEcCCCEEEEECC
Confidence            66667788888864

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.38  E-value=4.2e-11  Score=121.48  Aligned_cols=231  Identities=11%  Similarity=0.012  Sum_probs=135.8

Q ss_pred             ceeeeEEcCCCCEEEEE-----eCCCeEEEEEccCCCCcceeeccCCcCCe--eEEEEccCCCceEEEecCCe-------
Q 014302          101 DLQGVSWHQHKHIVAFI-----SGSTQVIVRDYEDSGKDACILTSDSQRDV--KVLEWRPNGGRSLSVGCKGG-------  166 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-----~~d~~v~vwd~~~~~~~~~~~~~~~~~~v--~~l~~sp~~~~~la~g~~~~-------  166 (427)
                      .+.+++|||||++||.+     +.+.+|++||+.++.  ...  ..+...+  ..++|+|||+.++.+..+..       
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~--~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~  197 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGE--WSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE  197 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCC--BCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCC--CcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence            58899999999999854     345789999998872  220  1122222  68999999966666665544       


Q ss_pred             ------EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------
Q 014302          167 ------ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT----------  230 (427)
Q Consensus       167 ------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------  230 (427)
                            |.+|++.         ++            ..+-.++.....+ ...+..+.|+|||+++....          
T Consensus       198 ~~~~~~v~~~~l~---------t~------------~~~~~lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          198 RPGYTTIRYHTLG---------TE------------PSKDTVVHERTGD-PTTFLQSDLSRDGKYLFVYILRGWSENDVY  255 (695)
T ss_dssp             GGGGCEEEEEETT---------SC------------GGGCEEEECCCCC-TTCEEEEEECTTSCCEEEEEEETTTEEEEE
T ss_pred             CCCCCEEEEEECC---------CC------------chhceEEEecCCC-CEEEEEEEECCCCCEEEEEEeCCCCceEEE
Confidence                  8889886         11            0000111111111 34677889999998754211          


Q ss_pred             ----------eEEeccCCeEEEEEccCCCEEE-EEe---cCCcEEEEEcCCCCc---cccccC--CCCeeEEEECCCCCE
Q 014302          231 ----------PIRRGFGGLSILKWSPTGDYFF-AAK---FDGTFYLWETNTWTS---EPWSST--SGFVTGATWDPEGRM  291 (427)
Q Consensus       231 ----------~~~~~~~~v~~~~~sp~g~~l~-~~~---~dg~v~iwd~~~~~~---~~~~~~--~~~v~~v~~spdg~~  291 (427)
                                .+..+...+....| ++|+ |+ .+.   .++.|.+||+.+++.   ..+..+  ...+..++|+ ++..
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l  332 (695)
T 2bkl_A          256 WKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL  332 (695)
T ss_dssp             EECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred             EEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence                      11223334455555 6777 55 443   257899999987654   223333  4567888888 5555


Q ss_pred             EEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          292 ILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       292 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      +++ ...++...++.+.-. ..   ....+.      +...+.+..++++|+++.|+..+.+.  ..+++|++||+.+++
T Consensus       333 v~~-~~~dg~~~l~~~~~~-g~---~~~~l~------~~~~~~v~~~~~s~d~~~l~~~~ss~--~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          333 SLE-YLKDATSEVRVATLK-GK---PVRTVQ------LPGVGAASNLMGLEDLDDAYYVFTSF--TTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEE-EEETTEEEEEEEETT-CC---EEEECC------CSSSSEECCCBSCTTCSEEEEEEEET--TEEEEEEEEETTTCC
T ss_pred             EEE-EEECCEEEEEEEeCC-CC---eeEEec------CCCCeEEEEeecCCCCCEEEEEEcCC--CCCCEEEEEECCCCc
Confidence            544 444444444433311 00   000010      11233677888999999888764332  235889999998876


Q ss_pred             eE
Q 014302          372 LI  373 (427)
Q Consensus       372 ~~  373 (427)
                      ..
T Consensus       400 ~~  401 (695)
T 2bkl_A          400 SE  401 (695)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.37  E-value=5.1e-11  Score=109.97  Aligned_cols=223  Identities=11%  Similarity=0.177  Sum_probs=124.4

Q ss_pred             CceeeeEEcCCCCEEEEEe---------CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC---Ce-
Q 014302          100 VDLQGVSWHQHKHIVAFIS---------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK---GG-  166 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~---------~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~---~~-  166 (427)
                      ..+..+++  ||++||...         .++.|.+|++..+  ....+     ..+..++|||||+.++.+..+   +. 
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~   85 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNN--ARRFI-----ENATMPRISPDGKKIAFMRANEEKKVS   85 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTC--CEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCC--ceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence            35778888  999887752         2567888888766  33333     468899999999555444432   33 


Q ss_pred             -EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEc
Q 014302          167 -ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWS  245 (427)
Q Consensus       167 -i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~s  245 (427)
                       |.+|++.         ++              +  ......                           +.. +..++|+
T Consensus        86 ~l~~~~~~---------~g--------------~--~~~l~~---------------------------~~~-~~~~~ws  112 (347)
T 2gop_A           86 EIWVADLE---------TL--------------S--SKKILE---------------------------AKN-IRSLEWN  112 (347)
T ss_dssp             EEEEEETT---------TT--------------E--EEEEEE---------------------------ESE-EEEEEEC
T ss_pred             eEEEEECC---------CC--------------c--eEEEEc---------------------------CCC-ccceeEC
Confidence             4455554         11              1  111011                           111 4555666


Q ss_pred             cCCCEEEEEec---------------------------CCcEEEEEcCCCCc-cccccCCCCeeEEEECCCCCEEEEEEc
Q 014302          246 PTGDYFFAAKF---------------------------DGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILLAFA  297 (427)
Q Consensus       246 p~g~~l~~~~~---------------------------dg~v~iwd~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~  297 (427)
                      |||+.|+.++.                           ...|++||+.+++. ..+.. . .+..++|+||| .++++..
T Consensus       113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~  189 (347)
T 2gop_A          113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPH  189 (347)
T ss_dssp             TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred             CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEec
Confidence            66665554432                           25689999988776 44434 3 78899999999 5555433


Q ss_pred             CC--------ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCc--ceeEEEEEEe
Q 014302          298 GS--------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI--YKGLIAIYDA  367 (427)
Q Consensus       298 ~~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~--~~g~i~vwd~  367 (427)
                      +.        ..++.++  ..      ....+       ..+ ..+..+  +|||++|+.......+.  ....|.+|| 
T Consensus       190 ~~~~~~~~~~~~l~~~d--~~------~~~~l-------~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d-  250 (347)
T 2gop_A          190 REIIPQYFKFWDIYIWE--DG------KEEKM-------FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD-  250 (347)
T ss_dssp             CCSSCCSSCCEEEEEEE--TT------EEEEE-------EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC-
T ss_pred             ccccccccccccEEEeC--CC------ceEEe-------ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC-
Confidence            21        1344443  21      00000       011 234443  99999998854322100  014588888 


Q ss_pred             ccCceEEEeeeeeeeCCCCCCCcee-EEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          368 RRTPLISLSLIGFIRGPGDNPKPVA-FSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                       ++....+..       ........ +.|.    ++ ++.++..+|.+.+| +-
T Consensus       251 -~~~~~~l~~-------~~~~~~~~~~~~s----dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          251 -GKEVMGILD-------EVDRGVGQAKIKD----GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             -SSCEEESST-------TCCSEEEEEEEET----TE-EEEEEEETTEEEEE-EE
T ss_pred             -CCceEeccc-------cCCcccCCccEEc----Cc-EEEEEecCCcEEEE-Ec
Confidence             544432221       11111222 4554    36 88888899999998 64

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.37  E-value=2.2e-11  Score=122.84  Aligned_cols=212  Identities=10%  Similarity=0.023  Sum_probs=122.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCC----------CeEEEEEccCCC----CcceeeccCCcCCeeEEEEccCCCceEEEecC--
Q 014302          101 DLQGVSWHQHKHIVAFISGS----------TQVIVRDYEDSG----KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--  164 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d----------~~v~vwd~~~~~----~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~--  164 (427)
                      .+.+++|||||++|++++.+          ..|++|++....    .....+...+...+..++|||||+.++.++.+  
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~  210 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHP  210 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTT
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCC
Confidence            67899999999999988876          588899987720    13333331445678899999999555445433  


Q ss_pred             ------CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCC
Q 014302          165 ------GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGG  238 (427)
Q Consensus       165 ------~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  238 (427)
                            ..|.+|+++..+                      ......           .              ....+...
T Consensus       211 ~~~~~~~~i~~~d~~~~g----------------------~~~~~~-----------~--------------l~~~~~~~  243 (662)
T 3azo_A          211 RMPWEGTELKTARVTEDG----------------------RFADTR-----------T--------------LLGGPEEA  243 (662)
T ss_dssp             CCTTTCEEEEEEEECTTS----------------------CEEEEE-----------E--------------EEEETTBC
T ss_pred             CCCCCCcEEEEEEECCCC----------------------cccccE-----------E--------------eCCCCCce
Confidence                  257777775000                      000000           0              11123456


Q ss_pred             eEEEEEccCCCEEEEEecCC--cEEEEEcCCCCccccccCCCC---------eeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302          239 LSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSSTSGF---------VTGATWDPEGRMILLAFAGSLTLGSIHF  307 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~---------v~~v~~spdg~~l~~~~~~~~~i~~~~~  307 (427)
                      +..++|+|||++++++..++  .|++||+.+++...+..+...         +..++|+|+++.++++..  +...+|.+
T Consensus       244 ~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~  321 (662)
T 3azo_A          244 IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK--GAAVLGIL  321 (662)
T ss_dssp             EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS--SSCEEEEE
T ss_pred             EcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc--CccEEEEE
Confidence            88899999999777888888  566666655554333322211         467889999998877654  45555544


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      ......+    ..+       ..+.+.+..+ |+++++.++....+. + .+..|.+||+.++++..+
T Consensus       322 d~~~~~~----~~l-------~~~~~~~~~~-~s~~~~~~~~~~~~~-~-~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          322 DPESGEL----VDA-------AGPWTEWAAT-LTVSGTRAVGVAASP-R-TAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             ETTTTEE----EEC-------CSSCCEEEEE-EEEETTEEEEEEEET-T-EEEEEEEEETTTCCEEEE
T ss_pred             ECCCCcE----EEe-------cCCCCeEEEE-EecCCCEEEEEEcCC-C-CCCEEEEEECCCCceEEe
Confidence            3211100    000       0112245555 255666665543232 2 224577777777766544

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.32  E-value=1.4e-09  Score=106.62  Aligned_cols=236  Identities=12%  Similarity=0.132  Sum_probs=149.5

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccc
Q 014302          109 QHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  188 (427)
Q Consensus       109 p~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~  188 (427)
                      |.+.++++...+++|.++|..+.  +..... .....+..+.|+|||+.+++++.++.|.+||+..         .    
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~--~v~~~i-~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~---------~----  228 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTY--EIKTVL-DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWM---------K----  228 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTC--CEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEETTS---------S----
T ss_pred             CCceEEEEeCCCCeEEEEECCCC--eEEEEE-eCCCCccceEECCCCCEEEEEcCCCeEEEEECCC---------C----
Confidence            44456677778899999998876  232222 2233567899999996666666668999999830         0    


Q ss_pred             cccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEc----cCCCEEEEE-ecCCcEEEE
Q 014302          189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWS----PTGDYFFAA-KFDGTFYLW  263 (427)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~s----p~g~~l~~~-~~dg~v~iw  263 (427)
                                ....+.                          .++. ......++|+    |||++++++ ..++.|.++
T Consensus       229 ----------t~~~v~--------------------------~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi  271 (567)
T 1qks_A          229 ----------EPTTVA--------------------------EIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIM  271 (567)
T ss_dssp             ----------SCCEEE--------------------------EEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred             ----------CCcEeE--------------------------EEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence                      000111                          1111 2235678999    699999854 456999999


Q ss_pred             EcCCCCcccccc-----------C-CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302          264 ETNTWTSEPWSS-----------T-SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  331 (427)
Q Consensus       264 d~~~~~~~~~~~-----------~-~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (427)
                      |..+.+......           | ...+..+..++++..+++...+.+.+.+++..+... +          ....+..
T Consensus       272 D~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-~----------~v~~i~~  340 (567)
T 1qks_A          272 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-L----------KTTEISA  340 (567)
T ss_dssp             ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-E----------EEEEEEC
T ss_pred             ECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-c----------eeeeeec
Confidence            998877643321           1 226778999999888888777778888888766420 0          0111222


Q ss_pred             CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeee-eeeeCCCCCCCceeEEeccCCCCCceeEEEe-
Q 014302          332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI-GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW-  409 (427)
Q Consensus       332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~-  409 (427)
                      ......+.|+|+|++++++..++     .+|.++|+.++++....+. |..-.++.   ...+ ++|++  +.+++++. 
T Consensus       341 ~~~~~d~~~~pdgr~~~va~~~s-----n~V~ViD~~t~kl~~~i~vgg~~Phpg~---g~~~-~~p~~--g~v~~t~~~  409 (567)
T 1qks_A          341 ERFLHDGGLDGSHRYFITAANAR-----NKLVVIDTKEGKLVAIEDTGGQTPHPGR---GANF-VHPTF--GPVWATSHM  409 (567)
T ss_dssp             CSSEEEEEECTTSCEEEEEEGGG-----TEEEEEETTTTEEEEEEECSSSSBCCTT---CEEE-EETTT--EEEEEEEBS
T ss_pred             cccccCceECCCCCEEEEEeCCC-----CeEEEEECCCCcEEEEEeccCcCCCCcc---ceee-ECCCC--CcEEEeCCC
Confidence            23567889999999998865444     3599999999987765554 32111111   1112 46652  44544442 


Q ss_pred             eCceEEEEec
Q 014302          410 SSGFCCTYPL  419 (427)
Q Consensus       410 ~~g~i~~~~~  419 (427)
                      .++.|.+++.
T Consensus       410 g~~~Vsvid~  419 (567)
T 1qks_A          410 GDDSVALIGT  419 (567)
T ss_dssp             SSSEEEEEEC
T ss_pred             CCCeEEEecC
Confidence            4578888763

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.30  E-value=6.6e-10  Score=105.04  Aligned_cols=259  Identities=12%  Similarity=0.069  Sum_probs=151.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCC--eEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG--GICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~--~i~iw~~~~~~~~  178 (427)
                      ....|+|+++|+++++...++.|++||.+..  ....+... ..... ++|+|++..++++..++  .|.+|+..     
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g--~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~-----  202 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDN--KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKA-----  202 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTT--EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGG-----
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCC--EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcC-----
Confidence            5789999999998877777899999998765  23222222 22233 99999995555555444  56666654     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                          .+             ........+.                         .........++++|++..|+.+..++
T Consensus       203 ----~~-------------~~~~~~g~~~-------------------------~~~~~~p~~iav~p~~g~lyv~d~~~  240 (409)
T 3hrp_A          203 ----SG-------------WAPTRIGQLG-------------------------STFSGKIGAVALDETEEWLYFVDSNK  240 (409)
T ss_dssp             ----GT-------------TCEEEEEECC-------------------------TTSCSCCCBCEECTTSSEEEEECTTC
T ss_pred             ----CC-------------ceeEEeeecc-------------------------chhcCCcEEEEEeCCCCeEEEEECCC
Confidence                00             0000000000                         00123456788999666666677788


Q ss_pred             cEEEEEcCCCCcccc----c-cCCCCe-e-EEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce-eec
Q 014302          259 TFYLWETNTWTSEPW----S-STSGFV-T-GATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-SLT  330 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~----~-~~~~~v-~-~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  330 (427)
                      .|+.||..+.....+    . ...... . .++|+|++..|+++......|+.++.......+.++....-..... ...
T Consensus       241 ~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~  320 (409)
T 3hrp_A          241 NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEA  320 (409)
T ss_dssp             EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGC
T ss_pred             cEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCccccc
Confidence            999999887664333    1 222222 2 9999997667776666666777776544311111111000000000 000


Q ss_pred             cCCceeEEEECCCCCEEEEEEecC-CCcceeEEEEEEeccCceEEEeee----eeeeCC---CCCCCceeEEeccCCCCC
Q 014302          331 GSQGIEKIAWDASGERLAVSYKGG-DDIYKGLIAIYDARRTPLISLSLI----GFIRGP---GDNPKPVAFSFHDKFKQG  402 (427)
Q Consensus       331 ~~~~i~~v~~sp~g~~La~~~~~~-~d~~~g~i~vwd~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~f~~~~~~g  402 (427)
                      .-.....++|+|+|+++++   +. ..   +.|+.|++.++.+..+.-.    |+..+.   .....|..+++.++   |
T Consensus       321 ~~~~P~gia~d~dG~lyva---d~~~~---~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~---g  391 (409)
T 3hrp_A          321 LFAQPNGMTVDEDGNFYIV---DGFKG---YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE---G  391 (409)
T ss_dssp             BCSSEEEEEECTTCCEEEE---ETTTT---CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS---S
T ss_pred             EeCCCeEEEEeCCCCEEEE---eCCCC---CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC---C
Confidence            0125789999999996555   44 44   5699999877765433221    111111   11234778888875   7


Q ss_pred             ceeEEEeeCceEEEEec
Q 014302          403 PLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       403 ~~l~v~~~~g~i~~~~~  419 (427)
                      .++...+.+++|..+.+
T Consensus       392 ~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          392 GYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEEEEESTTCEEEEEEE
T ss_pred             CEEEEECCCCeEEEEEe
Confidence            88888888999988764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.29  E-value=7e-10  Score=103.14  Aligned_cols=243  Identities=13%  Similarity=0.052  Sum_probs=136.8

Q ss_pred             eeEEcCCCCEEEEEe----------CCCeEEEEEccCCCCcceeecc-C-----CcCCeeEEEEccCCCceEEEec--CC
Q 014302          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTS-D-----SQRDVKVLEWRPNGGRSLSVGC--KG  165 (427)
Q Consensus       104 ~l~~sp~g~~lat~~----------~d~~v~vwd~~~~~~~~~~~~~-~-----~~~~v~~l~~sp~~~~~la~g~--~~  165 (427)
                      .++|+|||++|+++.          .+++|.+||..+.  +...... .     +......++++|||+.++++..  ++
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~--~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~  131 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL--TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPAT  131 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC--CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC--cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCC
Confidence            789999999998876          2678999998765  2221111 1     2345678999999955554442  47


Q ss_pred             eEEEEeccCCCCccccccCcccccccccCCCCcceeEeeh-hcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEE
Q 014302          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKW  244 (427)
Q Consensus       166 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~  244 (427)
                      .|.+||+.         ++                ..+.. +..                            .+...+.+
T Consensus       132 ~v~v~d~~---------~~----------------~~~~~~i~~----------------------------~~~~~v~~  158 (361)
T 2oiz_A          132 SIGIVDVA---------KG----------------DYVEDVTAA----------------------------AGCWSVIP  158 (361)
T ss_dssp             EEEEEETT---------TT----------------EEEEEEGGG----------------------------TTEEEEEE
T ss_pred             eEEEEECC---------CC----------------cEEEEEecC----------------------------CCcceeEE
Confidence            89999997         11                12221 111                            11122344


Q ss_pred             ccCC-CEEEEEecCCcEEEEEcCC-CCcc-------ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          245 SPTG-DYFFAAKFDGTFYLWETNT-WTSE-------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       245 sp~g-~~l~~~~~dg~v~iwd~~~-~~~~-------~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      .|++ ..+++.+.||.+.+|++.. ++..       .+...... ..+.+++++..+++.+. ++.++.+++........
T Consensus       159 ~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~-~~~v~v~d~~~~~~~~~  236 (361)
T 2oiz_A          159 QPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY-YGNVYSADFSGDEVKVD  236 (361)
T ss_dssp             CTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT-TSEEEEEECSSSSCEEE
T ss_pred             cCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC-CCeEEEEEecCCCceec
Confidence            5554 3445666677777776643 2211       11111111 23344677877776654 45788888764321110


Q ss_pred             ccccccccccceeecc---CCceeEEEECCCCCEEEEEEe-cCCC----cceeEEEEEEeccCceEEEeeeeeeeCCCCC
Q 014302          316 AHLLPVDLPDIVSLTG---SQGIEKIAWDASGERLAVSYK-GGDD----IYKGLIAIYDARRTPLISLSLIGFIRGPGDN  387 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~---~~~i~~v~~sp~g~~La~~~~-~~~d----~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~  387 (427)
                      ..   +.+........   ......++|+|+++++.++.. .+.+    ....+|.+||+.+++.+...+     ...  
T Consensus       237 ~~---~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-----~~~--  306 (361)
T 2oiz_A          237 GP---WSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-----GRD--  306 (361)
T ss_dssp             EE---EESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-----CTT--
T ss_pred             cc---ccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-----cCC--
Confidence            00   00000000000   012234789999999888643 1110    001469999999988764332     222  


Q ss_pred             CCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          388 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       388 ~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                        +..++|.|+   |..|.++.. +.|.+|+.
T Consensus       307 --p~~ia~spd---g~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          307 --ALSMTIDQQ---RNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             --CCEEEEETT---TTEEEEECS-SCEEEEEC
T ss_pred             --eeEEEECCC---CCEEEEeCC-CeEEEEEC
Confidence              668999996   667777765 99999974

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.28  E-value=1.2e-09  Score=99.01  Aligned_cols=246  Identities=12%  Similarity=0.191  Sum_probs=147.2

Q ss_pred             ceeeeEEcCCCCEEEE-------EeCCCeEEEEEccCCCCcceeecc----CCcCCeeEEEEccC-CCceEEEecCCeEE
Q 014302          101 DLQGVSWHQHKHIVAF-------ISGSTQVIVRDYEDSGKDACILTS----DSQRDVKVLEWRPN-GGRSLSVGCKGGIC  168 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat-------~~~d~~v~vwd~~~~~~~~~~~~~----~~~~~v~~l~~sp~-~~~~la~g~~~~i~  168 (427)
                      ...+++|+++|.++++       +..++.|.+|+...+  .......    ++...+.+++++++ + .++++...++|.
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~i~~~~~~g-~l~v~~~~~~l~   95 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTG--KKTVICKPEVNGYGGIPAGCQCDRDAN-QLFVADMRLGLL   95 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTC--CEEEEECCEETTEECCEEEEEECSSSS-EEEEEETTTEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCC--cEEEEEecccCCCCCCCceEEEecCCC-cEEEEECCCCEE
Confidence            3578999999987777       567889999987665  2222221    24467899999999 6 666666556788


Q ss_pred             EEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCC
Q 014302          169 IWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTG  248 (427)
Q Consensus       169 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g  248 (427)
                      +|+.+  +.                      ..... ....            .+          .....+..++++++|
T Consensus        96 ~~d~~--g~----------------------~~~~~-~~~~------------~~----------~~~~~~~~i~~d~~g  128 (314)
T 1pjx_A           96 VVQTD--GT----------------------FEEIA-KKDS------------EG----------RRMQGCNDCAFDYEG  128 (314)
T ss_dssp             EEETT--SC----------------------EEECC-SBCT------------TS----------CBCBCCCEEEECTTS
T ss_pred             EEeCC--CC----------------------EEEEE-eccC------------CC----------ccccCCcCEEECCCC
Confidence            88764  11                      00000 0000            00          012346678889998


Q ss_pred             CEEEEEecC---------------CcEEEEEcCCCCccccccCCCCeeEEEEC----CCCCEEEEEEcCCceeeeeeeCC
Q 014302          249 DYFFAAKFD---------------GTFYLWETNTWTSEPWSSTSGFVTGATWD----PEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       249 ~~l~~~~~d---------------g~v~iwd~~~~~~~~~~~~~~~v~~v~~s----pdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      +.+++...+               +.|..||.. ++......+......++|+    |+|+.|+++....+.++.++...
T Consensus       129 ~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~  207 (314)
T 1pjx_A          129 NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG  207 (314)
T ss_dssp             CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred             CEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC
Confidence            877665544               467777654 4333333334456789999    99988777766666788777652


Q ss_pred             CCCCccccccccccccceeeccC--CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCC
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGS--QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN  387 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~--~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~  387 (427)
                      . ..+.....      ...+...  ..+..++++++|+++++...   +   +.|.+||..++..+..     +..+.  
T Consensus       208 ~-g~~~~~~~------~~~~~~~~~~~p~~i~~d~~G~l~v~~~~---~---~~i~~~d~~~g~~~~~-----~~~~~--  267 (314)
T 1pjx_A          208 P-AKIENKKV------WGHIPGTHEGGADGMDFDEDNNLLVANWG---S---SHIEVFGPDGGQPKMR-----IRCPF--  267 (314)
T ss_dssp             T-TEEEEEEE------EEECCCCSSCEEEEEEEBTTCCEEEEEET---T---TEEEEECTTCBSCSEE-----EECSS--
T ss_pred             C-CccccceE------EEECCCCCCCCCCceEECCCCCEEEEEcC---C---CEEEEEcCCCCcEeEE-----EeCCC--
Confidence            1 00000000      0011111  35788999999988877422   2   4599999886654322     11221  


Q ss_pred             CCceeEEeccCCCCCceeEEE-eeCceEEEEecc
Q 014302          388 PKPVAFSFHDKFKQGPLLSVC-WSSGFCCTYPLI  420 (427)
Q Consensus       388 ~~~~~~~f~~~~~~g~~l~v~-~~~g~i~~~~~~  420 (427)
                      ..+.+++|.++   |..|.++ ..++.|..|++-
T Consensus       268 ~~~~~i~~~~d---g~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          268 EKPSNLHFKPQ---TKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             SCEEEEEECTT---SSEEEEEETTTTEEEEEECS
T ss_pred             CCceeEEECCC---CCEEEEEeCCCCeEEEEeCC
Confidence            34678888664   6645444 445788888754

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.26  E-value=7.7e-10  Score=112.21  Aligned_cols=234  Identities=10%  Similarity=0.074  Sum_probs=133.3

Q ss_pred             cCCCCEEEEEeCCC---eEEEEEccCCCCcceeecc------CCcCCeeEEEEccCCCceEE-E----ecC-CeEEEEec
Q 014302          108 HQHKHIVAFISGST---QVIVRDYEDSGKDACILTS------DSQRDVKVLEWRPNGGRSLS-V----GCK-GGICIWAP  172 (427)
Q Consensus       108 sp~g~~lat~~~d~---~v~vwd~~~~~~~~~~~~~------~~~~~v~~l~~sp~~~~~la-~----g~~-~~i~iw~~  172 (427)
                      +|+|++++....++   .-.||...........+..      +|...+.+++||||| +.|| +    |++ ..|++||+
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG-~~la~~~~~~G~~~~~i~v~dl  154 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDG-KKVAFAQKPNAADEAVLHVIDV  154 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTS-SEEEEEEEETTCSCCEEEEEET
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCC-CEEEEEECCCCCceEEEEEEEC
Confidence            48899888776543   3456665533222333322      355578999999999 5555 2    222 57999999


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF  252 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~  252 (427)
                      .         ++              +  ...  ..+                      +.  ......++|+|||+.|+
T Consensus       155 ~---------tg--------------~--~~~--~~~----------------------~~--~~~~~~~~wspDg~~l~  183 (695)
T 2bkl_A          155 D---------SG--------------E--WSK--VDV----------------------IE--GGKYATPKWTPDSKGFY  183 (695)
T ss_dssp             T---------TC--------------C--BCS--SCC----------------------BS--CCTTCCCEECTTSSEEE
T ss_pred             C---------CC--------------C--CcC--Ccc----------------------cC--cccccceEEecCCCEEE
Confidence            7         11              0  000  000                      00  00124678999999999


Q ss_pred             EEecCCc-------------EEEEEcCCCCcc-ccc----cCCCCeeEEEECCCCCEEEEEEcCC-c--eeeeeeeCCCC
Q 014302          253 AAKFDGT-------------FYLWETNTWTSE-PWS----STSGFVTGATWDPEGRMILLAFAGS-L--TLGSIHFASKP  311 (427)
Q Consensus       253 ~~~~dg~-------------v~iwd~~~~~~~-~~~----~~~~~v~~v~~spdg~~l~~~~~~~-~--~i~~~~~~~~~  311 (427)
                      .++.|..             |++|++.+.... ...    .+...+..+.|||||++|+++.... .  .+++++.... 
T Consensus       184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-  262 (695)
T 2bkl_A          184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-  262 (695)
T ss_dssp             EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-
T ss_pred             EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-
Confidence            8777665             999999887642 111    3446788999999999998876554 2  4444422111 


Q ss_pred             CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecC-CCcceeEEEEEEeccCce---EEEeeeeeeeCCCCC
Q 014302          312 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG-DDIYKGLIAIYDARRTPL---ISLSLIGFIRGPGDN  387 (427)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~-~d~~~g~i~vwd~~~~~~---~~~~~~~~~~~~~~~  387 (427)
                       .+           .........+....| ++|+ |++..... .+   +.|.+||+.++..   ..+.+      ....
T Consensus       263 -~~-----------~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~---~~l~~~d~~~~~~~~~~~l~~------~~~~  319 (695)
T 2bkl_A          263 -DF-----------RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPR---QRVFEVDPAKPARASWKEIVP------EDSS  319 (695)
T ss_dssp             -SC-----------EEEEECSSCCEEEEE-ETTE-EEEEECTTCTT---CEEEEEBTTBCSGGGCEEEEC------CCSS
T ss_pred             -ce-----------EEeecCCCceEEEEe-cCCc-EEEEECCCCCC---CEEEEEeCCCCCccCCeEEec------CCCC
Confidence             00           001112224455556 6777 55532211 22   6799999977642   32221      1111


Q ss_pred             CCceeEEeccCCCCCceeEEEeeCceEEEEeccc
Q 014302          388 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       388 ~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      .....++|.    .+.++.....+|...++-+-.
T Consensus       320 ~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~~  349 (695)
T 2bkl_A          320 ASLLSVSIV----GGHLSLEYLKDATSEVRVATL  349 (695)
T ss_dssp             CEEEEEEEE----TTEEEEEEEETTEEEEEEEET
T ss_pred             CeEEEEEEE----CCEEEEEEEECCEEEEEEEeC
Confidence            112234554    366788887888877775543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.26  E-value=9.6e-10  Score=98.51  Aligned_cols=198  Identities=10%  Similarity=0.069  Sum_probs=121.9

Q ss_pred             ceeeeEE-cCCCCEEEEEeC-CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCC
Q 014302          101 DLQGVSW-HQHKHIVAFISG-STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~-sp~g~~lat~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~  177 (427)
                      .+.++++ .+++.++++... ++.|++|+.+..  ........+...+.+++++|+| +++++. .++.|.+|+.+    
T Consensus        78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~--~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~----  150 (286)
T 1q7f_A           78 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ--FVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQN----  150 (286)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEECTTSC--EEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTT----
T ss_pred             CceEEEEEcCCCeEEEEcCCCCCEEEEECCCCc--EEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCC----
Confidence            5789999 577776666643 889999984322  2222223344578999999999 566655 45889999864    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                                         +.   ....+..                        ..+...+..++++|+|+.+++...+
T Consensus       151 -------------------g~---~~~~~~~------------------------~~~~~~p~~i~~~~~g~l~v~~~~~  184 (286)
T 1q7f_A          151 -------------------GN---VLHKFGC------------------------SKHLEFPNGVVVNDKQEIFISDNRA  184 (286)
T ss_dssp             -------------------SC---EEEEEEC------------------------TTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             -------------------CC---EEEEeCC------------------------CCccCCcEEEEECCCCCEEEEECCC
Confidence                               00   0110000                        0112356789999999877777788


Q ss_pred             CcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302          258 GTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                      +.|++||........+.  .+...+..++++++|+.+++...+...+.+|+....   ....        .........+
T Consensus       185 ~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~---~~~~--------~~~~~~~~~~  253 (286)
T 1q7f_A          185 HCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ---LISA--------LESKVKHAQC  253 (286)
T ss_dssp             TEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC---EEEE--------EEESSCCSCE
T ss_pred             CEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC---EEEE--------EcccCCCCcc
Confidence            99999997543222222  223578899999999877654333236666653221   1000        0000111247


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      .+++++|+|+++++   +. +   ++|++|++..
T Consensus       254 ~~i~~~~~g~l~vs---~~-~---~~v~v~~~~~  280 (286)
T 1q7f_A          254 FDVALMDDGSVVLA---SK-D---YRLYIYRYVQ  280 (286)
T ss_dssp             EEEEEETTTEEEEE---ET-T---TEEEEEECSC
T ss_pred             eeEEECCCCcEEEE---CC-C---CeEEEEEccc
Confidence            89999999986655   22 3   5699999754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.24  E-value=1e-08  Score=92.41  Aligned_cols=235  Identities=12%  Similarity=0.128  Sum_probs=138.0

Q ss_pred             eeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       102 V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .-+..|+|++. ++++...++.|..||....  ....  ......+.+++|+|+| .++++. +++|.+|+.+       
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~--~~~~--~~~~~~~~~i~~~~dG-~l~v~~-~~~l~~~d~~-------   81 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTK--QVQR--VTMDAPVSSVALRQSG-GYVATI-GTKFCALNWK-------   81 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTC--CEEE--EECSSCEEEEEEBTTS-SEEEEE-TTEEEEEETT-------
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCC--cEEE--EeCCCceEEEEECCCC-CEEEEE-CCeEEEEECC-------
Confidence            35788999655 5566667899999998765  2222  2234679999999999 455544 6788899876       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC---
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD---  257 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---  257 (427)
                        ++              ....+..              .+.+.          ....+..++++|+|+++++....   
T Consensus        82 --~g--------------~~~~~~~--------------~~~~~----------~~~~~~di~~d~dG~l~~~~~~~~~~  121 (297)
T 3g4e_A           82 --EQ--------------SAVVLAT--------------VDNDK----------KNNRFNDGKVDPAGRYFAGTMAEETA  121 (297)
T ss_dssp             --TT--------------EEEEEEE--------------CCTTC----------SSEEEEEEEECTTSCEEEEEEECCSB
T ss_pred             --CC--------------cEEEEEe--------------cCCCC----------CCCCCCCEEECCCCCEEEecCCcccc
Confidence              11              1111110              00000          01235678888998866643221   


Q ss_pred             ------CcEEEEEcCCC-CccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeec
Q 014302          258 ------GTFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLT  330 (427)
Q Consensus       258 ------g~v~iwd~~~~-~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (427)
                            ..-.||.+... +.............++|+||++.|+++....+.|+.+++......+........+     ..
T Consensus       122 ~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~-----~~  196 (297)
T 3g4e_A          122 PAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKL-----EK  196 (297)
T ss_dssp             TTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEEC-----CG
T ss_pred             cccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEEC-----CC
Confidence                  23455555432 2222233344567899999999988777766788888774222211110000000     01


Q ss_pred             cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec-cCCCCCceeEEEe
Q 014302          331 GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH-DKFKQGPLLSVCW  409 (427)
Q Consensus       331 ~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~g~~l~v~~  409 (427)
                      ..+.+..++++++|++.++...+      +.|.+||..+++++..     +..+.  ..+.+++|. |+   +..|-|..
T Consensus       197 ~~~~p~g~~~d~~G~lwva~~~~------~~v~~~d~~tG~~~~~-----i~~p~--~~~t~~~f~g~d---~~~L~vt~  260 (297)
T 3g4e_A          197 EEQIPDGMCIDAEGKLWVACYNG------GRVIRLDPVTGKRLQT-----VKLPV--DKTTSCCFGGKN---YSEMYVTC  260 (297)
T ss_dssp             GGCEEEEEEEBTTSCEEEEEETT------TEEEEECTTTCCEEEE-----EECSS--SBEEEEEEESGG---GCEEEEEE
T ss_pred             CCCCCCeeEECCCCCEEEEEcCC------CEEEEEcCCCceEEEE-----EECCC--CCceEEEEeCCC---CCEEEEEc
Confidence            22367899999999877764332      4599999987776532     22222  236788997 54   44555554


Q ss_pred             e
Q 014302          410 S  410 (427)
Q Consensus       410 ~  410 (427)
                      .
T Consensus       261 ~  261 (297)
T 3g4e_A          261 A  261 (297)
T ss_dssp             B
T ss_pred             C
Confidence            4

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.24  E-value=3.1e-10  Score=105.21  Aligned_cols=187  Identities=11%  Similarity=0.026  Sum_probs=119.4

Q ss_pred             CCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCC---------CcceeeccCCcCCeeEEEEccCCCceEEEecCCeE
Q 014302           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSG---------KDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGI  167 (427)
Q Consensus        97 l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~---------~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i  167 (427)
                      +....++.+++++...++++|+.+ .++||+++...         .+. .....+.. |+.++|  |+ .+|+++.++.|
T Consensus        35 l~~~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~-~~L~v~~~~~l  108 (388)
T 1xip_A           35 LPFASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HG-DQVLVSTRNAL  108 (388)
T ss_dssp             CCSSCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ET-TEEEEEESSEE
T ss_pred             CCcccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CC-CEEEEEcCCcE
Confidence            344479999999999999999987 45569876431         111 12234566 999999  77 67777777999


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT  247 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~  247 (427)
                      ++|++..         .                      .                    .+..+..+..++..+.+.+.
T Consensus       109 ~v~dv~s---------l----------------------~--------------------~~~~~~~~~~~v~~i~~~~p  137 (388)
T 1xip_A          109 YSLDLEE---------L----------------------S--------------------EFRTVTSFEKPVFQLKNVNN  137 (388)
T ss_dssp             EEEESSS---------T----------------------T--------------------CEEEEEECSSCEEEEEECSS
T ss_pred             EEEEchh---------h----------------------h--------------------ccCccceeecceeeEEecCC
Confidence            9999870         0                      0                    00112223334555555543


Q ss_pred             CCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce
Q 014302          248 GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV  327 (427)
Q Consensus       248 g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
                        .+++++.||.|.+||+..+....   +...|.+++|||+|  ++.+..+ +.+.++.........+ ...+.. +...
T Consensus       138 --~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~d-g~i~~~~~~~~~~~~k-~~I~~P-p~~~  207 (388)
T 1xip_A          138 --TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKD-RSFQSFAWRNGEMEKQ-FEFSLP-SELE  207 (388)
T ss_dssp             --EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETT-SCEEEEEEETTEEEEE-EEECCC-HHHH
T ss_pred             --CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcC-CcEEEEcCCCcccccc-ceecCC-cccc
Confidence              38888999999999998776543   45689999999999  4555444 4777775544310000 001000 0000


Q ss_pred             -eeccCCceeEEEECCCCCEEEEE
Q 014302          328 -SLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       328 -~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                       ...+...|.++.|.+++.+|++-
T Consensus       208 ~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          208 ELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             TSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             cccCCCeeEEEEEEecCCeEEEEE
Confidence             01134589999999999999873

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.22  E-value=3.7e-08  Score=88.30  Aligned_cols=256  Identities=10%  Similarity=0.029  Sum_probs=151.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee-ccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      .+.+++++++|+++++...++.|.+||.. .  ..... ...+...+.++++.+++ .++++.. .+.|..|+.+  +..
T Consensus        16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~--~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~--g~~   89 (299)
T 2z2n_A           16 GPYGITVSDKGKVWITQHKANMISCINLD-G--KITEYPLPTPDAKVMCLTISSDG-EVWFTENAANKIGRITKK--GII   89 (299)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-C--CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT--SCE
T ss_pred             CccceEECCCCCEEEEecCCCcEEEEcCC-C--CeEEecCCcccCceeeEEECCCC-CEEEeCCCCCeEEEECCC--CcE
Confidence            68999999999977766667899999877 4  22222 12245678999999998 5555554 5788888864  110


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc-------------Cce--EE--eccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL-------------GTP--IR--RGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-------------~~~--~~--~~~~~v~~  241 (427)
                                            .... +.. ....+..+++.++|++...             +..  +.  .....+..
T Consensus        90 ----------------------~~~~-~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           90 ----------------------KEYT-LPN-PDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSF  145 (299)
T ss_dssp             ----------------------EEEE-CSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEE
T ss_pred             ----------------------EEEe-CCC-cCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCce
Confidence                                  0000 000 1233455555555543211             001  11  12345788


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      ++++++|+.+++...++.|..||. +++...+  ......+..++++++|+.++ +....+.+..++. +..  +..   
T Consensus       146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~~~-~g~--~~~---  217 (299)
T 2z2n_A          146 ITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWF-VEIIGNKIGRITT-SGE--ITE---  217 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECT-TCC--EEE---
T ss_pred             EEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEE-EccCCceEEEECC-CCc--EEE---
Confidence            999999987777766789999998 5554332  23445688999999998655 4444456776665 321  110   


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCC
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKF  399 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  399 (427)
                       ...     ......+.+++++++|+.+++   ...+   +.|.+||. .+......      .+.....+.++++ ++ 
T Consensus       218 -~~~-----~~~~~~~~~i~~~~~g~l~v~---~~~~---~~i~~~d~-~g~~~~~~------~~~~~~~~~~i~~-~~-  276 (299)
T 2z2n_A          218 -FKI-----PTPNARPHAITAGAGIDLWFT---EWGA---NKIGRLTS-NNIIEEYP------IQIKSAEPHGICF-DG-  276 (299)
T ss_dssp             -EEC-----SSTTCCEEEEEECSTTCEEEE---ETTT---TEEEEEET-TTEEEEEE------CSSSSCCEEEEEE-CS-
T ss_pred             -EEC-----CCCCCCceeEEECCCCCEEEe---ccCC---ceEEEECC-CCceEEEe------CCCCCCccceEEe-cC-
Confidence             000     012236889999999996655   3222   45999998 34332221      1112234667888 43 


Q ss_pred             CCCceeEEEeeCceEEEEe
Q 014302          400 KQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       400 ~~g~~l~v~~~~g~i~~~~  418 (427)
                        |.++... ..+.|..|+
T Consensus       277 --g~l~v~~-~~~~l~~~~  292 (299)
T 2z2n_A          277 --ETIWFAM-ECDKIGKLT  292 (299)
T ss_dssp             --SCEEEEE-TTTEEEEEE
T ss_pred             --CCEEEEe-cCCcEEEEE
Confidence              5555444 456666654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.22  E-value=4.3e-09  Score=96.40  Aligned_cols=239  Identities=10%  Similarity=0.070  Sum_probs=145.0

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCccc
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~~  180 (427)
                      ...+++. ++++.++...++.|.+||..+.  +..... ........+++++++ +++++. .++.|.+||..       
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~--~~~~~i-~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~-------  113 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTF--KEVGRI-TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPK-------  113 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTC--CEEEEE-ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETT-------
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECccc--EEEEEc-CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECC-------
Confidence            4667764 3445555666799999999876  332222 234568899999998 666666 56899999986       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe--cCC
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK--FDG  258 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~--~dg  258 (427)
                        ++                .....+...           . +         .........+++  ++..|+++.  .++
T Consensus       114 --t~----------------~~~~~i~~g-----------~-~---------~~~~~~p~~i~~--~~~~lyv~~~~~~~  152 (328)
T 3dsm_A          114 --TY----------------EITGYIECP-----------D-M---------DMESGSTEQMVQ--YGKYVYVNCWSYQN  152 (328)
T ss_dssp             --TT----------------EEEEEEECT-----------T-C---------CTTTCBCCCEEE--ETTEEEEEECTTCC
T ss_pred             --CC----------------eEEEEEEcC-----------C-c---------cccCCCcceEEE--ECCEEEEEcCCCCC
Confidence              11                111111100           0 0         000012334555  455666554  488


Q ss_pred             cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcC---------CceeeeeeeCCCCCCccccccccccccceee
Q 014302          259 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                      .|.++|+.+++.............++++|+|++++++...         .+.+..++..+..  +..         ....
T Consensus       153 ~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--v~~---------~~~~  221 (328)
T 3dsm_A          153 RILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--VEK---------QFKF  221 (328)
T ss_dssp             EEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--EEE---------EEEC
T ss_pred             EEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe--EEE---------EEec
Confidence            9999999988764444334456789999999866554332         1466666654431  100         0011


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEE-
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC-  408 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~-  408 (427)
                      ..+..+..++|+|++++|.++  .. .     |.+||..++.+...   .++..  ....|..+++.|.  .+.+.... 
T Consensus       222 ~~g~~p~~la~~~d~~~lyv~--~~-~-----v~~~d~~t~~~~~~---~~~~~--~~~~p~gi~vdp~--~g~lyva~~  286 (328)
T 3dsm_A          222 KLGDWPSEVQLNGTRDTLYWI--NN-D-----IWRMPVEADRVPVR---PFLEF--RDTKYYGLTVNPN--NGEVYVADA  286 (328)
T ss_dssp             CTTCCCEEEEECTTSCEEEEE--SS-S-----EEEEETTCSSCCSS---CSBCC--CSSCEEEEEECTT--TCCEEEEEC
T ss_pred             CCCCCceeEEEecCCCEEEEE--cc-E-----EEEEECCCCceeee---eeecC--CCCceEEEEEcCC--CCeEEEEcc
Confidence            112367999999999999884  32 2     99999988775311   11111  1234778999885  36677776 


Q ss_pred             ---eeCceEEEEec
Q 014302          409 ---WSSGFCCTYPL  419 (427)
Q Consensus       409 ---~~~g~i~~~~~  419 (427)
                         +.+|.|.+|+.
T Consensus       287 ~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          287 IDYQQQGIVYRYSP  300 (328)
T ss_dssp             TTSSSEEEEEEECT
T ss_pred             cccccCCEEEEECC
Confidence               67899999975

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.22  E-value=2.3e-09  Score=108.94  Aligned_cols=212  Identities=8%  Similarity=-0.016  Sum_probs=126.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCe----------------EEEEEccCCCCcceeeccC--CcCCeeEEEEccCCCceEEEe
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQ----------------VIVRDYEDSGKDACILTSD--SQRDVKVLEWRPNGGRSLSVG  162 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~----------------v~vwd~~~~~~~~~~~~~~--~~~~v~~l~~sp~~~~~la~g  162 (427)
                      .+..++|+|||+.|++++.++.                |++|++.++......+...  |...+..++|+|||+.++.+.
T Consensus       172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence            4678999999999999988765                9999987763222233222  455678999999996555554


Q ss_pred             c-----CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccC
Q 014302          163 C-----KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFG  237 (427)
Q Consensus       163 ~-----~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~  237 (427)
                      .     +..+.+|++.         ..              .    .....  ...+               ..+..+..
T Consensus       252 ~~~~~~~~~l~~~d~~---------~~--------------~----~~~~~--~~~~---------------~~l~~~~~  287 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQ---------QE--------------S----NGITG--ILKW---------------VKLIDNFE  287 (710)
T ss_dssp             ECSSSSCCEEEEEEGG---------GS--------------S----SSSCS--SCCC---------------EEEECSSS
T ss_pred             EccCCCccEEEEEECc---------cc--------------c----cccCC--ccce---------------EEeeCCCC
Confidence            3     3467788876         10              0    00000  0000               01112222


Q ss_pred             CeEEEEEccCCCEEEEEecC----CcEEEEEcCCCCc---cccccCCC--CeeEEEECCCCCEEEEEEcCC-ceeeeeee
Q 014302          238 GLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTS---EPWSSTSG--FVTGATWDPEGRMILLAFAGS-LTLGSIHF  307 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~---~~~~~~~~--~v~~v~~spdg~~l~~~~~~~-~~i~~~~~  307 (427)
                      .+.. .|+|+|+.|+..+..    +.|.+||+.+...   ..+..+..  .+..++|++++..+++...+. ..++++++
T Consensus       288 ~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~  366 (710)
T 2xdw_A          288 GEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (710)
T ss_dssp             SCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             cEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence            3333 488999988855443    3599999987653   23334433  678899997666555544333 23555554


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      .+...     ...+.       ...+.+..++++|+++.|+.++.+.  ..+++|++||+.+++
T Consensus       367 ~~g~~-----~~~l~-------~~~~~v~~~~~s~d~~~l~~~~ss~--~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          367 ATGAL-----LKIFP-------LEVGSVVGYSGQKKDTEIFYQFTSF--LSPGIIYHCDLTKEE  416 (710)
T ss_dssp             TTCCE-----EEEEC-------CCSSEEEEEECCTTCSEEEEEEECS--SCCCEEEEEETTSSS
T ss_pred             CCCCE-----EEecC-------CCCceEEEEecCCCCCEEEEEEeCC--CCCCEEEEEECCCCc
Confidence            33210     00010       0134678899999998887754332  234789999998876

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.20  E-value=1.4e-09  Score=111.02  Aligned_cols=230  Identities=10%  Similarity=0.038  Sum_probs=131.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCC-----CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCe---------
Q 014302          101 DLQGVSWHQHKHIVAFISGS-----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGG---------  166 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~---------  166 (427)
                      .+..++|||||++||.++.+     .+|++||+.++  +.... ..+...+..++|+|| +.++.+..++.         
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg--~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG--KPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC--CEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC--CCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence            67899999999999987653     46999999887  22221 112222468899999 77777765532         


Q ss_pred             -----EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhccc-CCCceeeeEeCCCCCCcccCc--------e-
Q 014302          167 -----ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ-NGEQITALSWGPDGRFPGLGT--------P-  231 (427)
Q Consensus       167 -----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~--------~-  231 (427)
                           |.+|++.         ++            ..+-..+  +... ....+..+.|+|||+++....        . 
T Consensus       240 ~~~~~v~~~~lg---------t~------------~~~~~lv--~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l  296 (741)
T 1yr2_A          240 NYNQTVWLHRLG---------TP------------QSADQPV--FATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTV  296 (741)
T ss_dssp             CCCCEEEEEETT---------SC------------GGGCEEE--ECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEE
T ss_pred             CCCCEEEEEECC---------CC------------chhCEEE--eccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceE
Confidence                 6677765         11            0000111  1111 122467889999998643110        1 


Q ss_pred             ---------------EEeccCCeEEEEEccCCCEEEEEecC----CcEEEEEcCCCC--ccccc-cCCCCeeEEEECCCC
Q 014302          232 ---------------IRRGFGGLSILKWSPTGDYFFAAKFD----GTFYLWETNTWT--SEPWS-STSGFVTGATWDPEG  289 (427)
Q Consensus       232 ---------------~~~~~~~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~--~~~~~-~~~~~v~~v~~spdg  289 (427)
                                     +..+...+... ++|+|+.|+..+.+    +.|.+||+.+..  ...+. .+...+..++|+ ++
T Consensus       297 ~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~  374 (741)
T 1yr2_A          297 HVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN  374 (741)
T ss_dssp             EEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT
T ss_pred             EEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CC
Confidence                           11122223333 45899998866643    459999987742  22232 344456677887 34


Q ss_pred             CEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          290 RMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       290 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                       .+++....++...++.+.-. ..   ....+.      +...+.+..++++|+++.|+.++.+.  ..+++|++||+.+
T Consensus       375 -~lv~~~~~dg~~~l~~~~~~-g~---~~~~l~------~~~~~~v~~~~~s~d~~~l~~~~ss~--~~P~~i~~~d~~t  441 (741)
T 1yr2_A          375 -RLFASYIHDAKSQVLAFDLD-GK---PAGAVS------LPGIGSASGLSGRPGDRHAYLSFSSF--TQPATVLALDPAT  441 (741)
T ss_dssp             -EEEEEEEETTEEEEEEEETT-SC---EEEECB------CSSSCEEEEEECCBTCSCEEEEEEET--TEEEEEEEEETTT
T ss_pred             -EEEEEEEECCEEEEEEEeCC-CC---ceeecc------CCCCeEEEEeecCCCCCEEEEEEcCC--CCCCEEEEEECCC
Confidence             44444444544433333211 00   000010      11234678899999998887654332  2358899999987


Q ss_pred             Cce
Q 014302          370 TPL  372 (427)
Q Consensus       370 ~~~  372 (427)
                      ++.
T Consensus       442 g~~  444 (741)
T 1yr2_A          442 AKT  444 (741)
T ss_dssp             TEE
T ss_pred             CcE
Confidence            664

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.17  E-value=1.4e-08  Score=99.65  Aligned_cols=258  Identities=11%  Similarity=0.009  Sum_probs=149.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEcc--CCCCcceeeccCCcCCeeEEEEc----cCCCceEEEecC-CeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYE--DSGKDACILTSDSQRDVKVLEWR----PNGGRSLSVGCK-GGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~--~~~~~~~~~~~~~~~~v~~l~~s----p~~~~~la~g~~-~~i~iw~~~  173 (427)
                      .+..+.|+|||++|++++.|+.|.+||+.  +.  ....... .......++|+    |||+.++++... +++.++|..
T Consensus       198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~--~~v~~i~-~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~  274 (567)
T 1qks_A          198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP--TTVAEIK-IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  274 (567)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--CEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             CccceEECCCCCEEEEEcCCCeEEEEECCCCCC--cEeEEEe-cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC
Confidence            56789999999999999999999999985  33  2222221 12346789999    699555555444 889999976


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEec-cCCeEEEEEccCCCEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRG-FGGLSILKWSPTGDYFF  252 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~-~~~v~~~~~sp~g~~l~  252 (427)
                               +                ...+..+...      ..  ..++        ...| ...+..+..++++..++
T Consensus       275 ---------t----------------~~~~~~i~~~------~~--~~~~--------~~~~p~~rva~i~~s~~~~~~v  313 (567)
T 1qks_A          275 ---------T----------------LEPKKIQSTR------GM--TYDE--------QEYHPEPRVAAILASHYRPEFI  313 (567)
T ss_dssp             ---------T----------------CCEEEEEECC------EE--CTTT--------CCEESCCCEEEEEECSSSSEEE
T ss_pred             ---------C----------------CcEEEEEecc------cc--cccc--------ccccCCCceEEEEEcCCCCEEE
Confidence                     1                1122211100      00  0000        0001 12456677888877655


Q ss_pred             -EEecCCcEEEEEcCCCCccc--cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceee
Q 014302          253 -AAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       253 -~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (427)
                       ....+|.|.++|....+...  ..........+.|+|+|++++++......+.+++..+.+.  ...   ++.  ....
T Consensus       314 v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl--~~~---i~v--gg~~  386 (567)
T 1qks_A          314 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL--VAI---EDT--GGQT  386 (567)
T ss_dssp             EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEE---EEC--SSSS
T ss_pred             EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcE--EEE---Eec--cCcC
Confidence             55667999999987654321  1234456778899999999998887777888888876421  000   000  0001


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce--EEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEE
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL--ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV  407 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v  407 (427)
                      .+.+.-..+ ++|++..+.++...++    ++|.|+|......  ..+.....+...+  ..++.+..||+   +..|-|
T Consensus       387 Phpg~g~~~-~~p~~g~v~~t~~~g~----~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~i~~~p~---~~~l~v  456 (567)
T 1qks_A          387 PHPGRGANF-VHPTFGPVWATSHMGD----DSVALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPN---SQYLYV  456 (567)
T ss_dssp             BCCTTCEEE-EETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTT---CSEEEE
T ss_pred             CCCccceee-ECCCCCcEEEeCCCCC----CeEEEecCCCCCCccccCEEEEEEecCC--CCCEEEEeCCC---CCeEEE
Confidence            111111112 5788665544332222    4699999976210  0111112333322  22456778887   555777


Q ss_pred             Eee-------CceEEEEec
Q 014302          408 CWS-------SGFCCTYPL  419 (427)
Q Consensus       408 ~~~-------~g~i~~~~~  419 (427)
                      ...       .+.|.+|++
T Consensus       457 ~~~~~~~~~~~~~v~v~d~  475 (567)
T 1qks_A          457 DATLNPEAEISGSVAVFDI  475 (567)
T ss_dssp             ECTTCSSHHHHTCEEEEEG
T ss_pred             ecCCCCCcccCceEEEEEC
Confidence            652       458888875

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.14  E-value=2e-08  Score=93.17  Aligned_cols=253  Identities=10%  Similarity=0.032  Sum_probs=146.9

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcccc
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~  181 (427)
                      |+.++|  |+.+|+++ .++.|++||+....  .......|...+.++.+.+.  .++++..+|.+.+|++.        
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~--------  154 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLR--------  154 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETT--------
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhh--ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEcc--------
Confidence            999999  99999999 88999999998773  22233456677888887755  36666788999999997        


Q ss_pred             ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEE
Q 014302          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFY  261 (427)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~  261 (427)
                       .+                ..                             . .+...|.+++|||+|  ++.|..||+++
T Consensus       155 -~~----------------~~-----------------------------~-~~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          155 -TK----------------ST-----------------------------K-QLAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             -TC----------------CE-----------------------------E-EEEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             -CC----------------cc-----------------------------c-cccCCceEEEEcCCc--eEEEEcCCcEE
Confidence             11                00                             0 023478999999999  67889999999


Q ss_pred             EEEcCCCCc---ccc------c---cCCCCeeEEEECCCCCEEEEEEcCC----------ceeeeeeeCCCCCCcccccc
Q 014302          262 LWETNTWTS---EPW------S---STSGFVTGATWDPEGRMILLAFAGS----------LTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       262 iwd~~~~~~---~~~------~---~~~~~v~~v~~spdg~~l~~~~~~~----------~~i~~~~~~~~~~~~~~~~~  319 (427)
                      +|+......   ..+      .   .|...|.+++|.++++++++=....          ..++++........+..-..
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~~f~~~~d  265 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQETFD  265 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEEEEEEESS
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCceeEcccc
Confidence            999887763   122      1   3678999999999999887533221          13445441111111100000


Q ss_pred             cc-ccccceeeccCCceeEEEECCCCCEEE-EEEecCCCcceeEEEEEEeccCceEEEee---eee--eeCC-CCCCCce
Q 014302          320 PV-DLPDIVSLTGSQGIEKIAWDASGERLA-VSYKGGDDIYKGLIAIYDARRTPLISLSL---IGF--IRGP-GDNPKPV  391 (427)
Q Consensus       320 ~~-~~~~~~~~~~~~~i~~v~~sp~g~~La-~~~~~~~d~~~g~i~vwd~~~~~~~~~~~---~~~--~~~~-~~~~~~~  391 (427)
                      +. .+....+..+-....=-.|.|+.+.|+ +++..+.|     |-|++-.  ..+....   ...  +... .++..|+
T Consensus       266 ~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~d-----i~il~~~--~~~~~~~Ds~Ra~lPl~~~~~~Dt~pi  338 (388)
T 1xip_A          266 ITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSE-----VSIWDSK--QVIEPSQDSERAVLPISEETDKDTNPI  338 (388)
T ss_dssp             SCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSB-----CEEECSS--SEEEESSGGGCCBCCBCTTTCCBCCEE
T ss_pred             CcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcc-----eEEeccc--cEEeecCccccceeccCCCCCCCCcce
Confidence            00 000000000000122336777665544 45555555     6666422  1111100   000  0111 3445566


Q ss_pred             eEEeccCCCC--------------CceeEEEeeCceEEEEeccccCCC
Q 014302          392 AFSFHDKFKQ--------------GPLLSVCWSSGFCCTYPLIFRSHL  425 (427)
Q Consensus       392 ~~~f~~~~~~--------------g~~l~v~~~~g~i~~~~~~~~~~~  425 (427)
                      .+++.-....              -.+|.+=.++|.+..|-++|.+.+
T Consensus       339 G~alD~ss~~~v~~p~~g~e~~~plP~l~~L~~~G~L~~~~~~~~~~i  386 (388)
T 1xip_A          339 GVAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFHVAAI  386 (388)
T ss_dssp             EEEEECSCCC--------------CCEEEEEETTSEEEEEEEEC----
T ss_pred             EEEEEcccCceecCCCCCcccCCCCCEEEEEcCCceEEEEEEEchhhh
Confidence            6665543221              124777789999999999987754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.14  E-value=5.6e-09  Score=105.75  Aligned_cols=206  Identities=10%  Similarity=0.065  Sum_probs=119.8

Q ss_pred             ceeeeEEcCCCCEEEEEe-----CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCC----------
Q 014302          101 DLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG----------  165 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~-----~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~----------  165 (427)
                      .+..++|||||++||.+.     ...+|+|||+.++  +..... .+......++|+ |++.++.+..+.          
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg--~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK--QPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC--SEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC--CCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            678899999999998653     2357999999887  222211 111113678999 996666666553          


Q ss_pred             ---eEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEe-ccCCeEE
Q 014302          166 ---GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRR-GFGGLSI  241 (427)
Q Consensus       166 ---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~-~~~~v~~  241 (427)
                         .|.+|++.         +.            ..+-.++.  ..                        .. +...+..
T Consensus       206 ~~~~v~~~~lg---------t~------------~~~~~~v~--~~------------------------~~~~~~~~~~  238 (693)
T 3iuj_A          206 DQHKVYFHRLG---------TA------------QEDDRLVF--GA------------------------IPAQHHRYVG  238 (693)
T ss_dssp             CCCEEEEEETT---------SC------------GGGCEEEE--SC------------------------SGGGCCSEEE
T ss_pred             CCcEEEEEECC---------CC------------cccceEEE--ec------------------------CCCCCeEEEE
Confidence               26666664         10            00000000  00                        00 1123567


Q ss_pred             EEEccCCCEEEEEec----CCcEEEEEcCCCC--ccccccCCCCeeEEEECCCCCEEEEEEcCC---ceeeeeeeCCCCC
Q 014302          242 LKWSPTGDYFFAAKF----DGTFYLWETNTWT--SEPWSSTSGFVTGATWDPEGRMILLAFAGS---LTLGSIHFASKPP  312 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~----dg~v~iwd~~~~~--~~~~~~~~~~v~~v~~spdg~~l~~~~~~~---~~i~~~~~~~~~~  312 (427)
                      +.|||||++|+....    ...|+++|+.+..  ...+..+....... |+++|..|++.++.+   ..|+.+++.....
T Consensus       239 ~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~  317 (693)
T 3iuj_A          239 ATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP  317 (693)
T ss_dssp             EEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred             EEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence            889999998874332    2479999997764  23444455555554 778888877766554   3566666654311


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      .   +     +  .....+...+.  .|++++++|+.+......   ..|++|++..+...
T Consensus       318 ~---~-----~--~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~---~~l~~~d~~g~~~~  363 (693)
T 3iuj_A          318 A---H-----W--RDLIPERQQVL--TVHSGSGYLFAEYMVDAT---ARVEQFDYEGKRVR  363 (693)
T ss_dssp             G---G-----C--EEEECCCSSCE--EEEEETTEEEEEEEETTE---EEEEEECTTSCEEE
T ss_pred             c---c-----c--EEEecCCCCEE--EEEEECCEEEEEEEECCe---eEEEEEECCCCeeE
Confidence            0   0     0  01111222333  899999999886544332   46999998765543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.14  E-value=1e-08  Score=93.92  Aligned_cols=210  Identities=16%  Similarity=0.117  Sum_probs=123.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec--------cCCcCCeeEEEEcc-CCCceEEEe--cCCeEEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT--------SDSQRDVKVLEWRP-NGGRSLSVG--CKGGICI  169 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~--------~~~~~~v~~l~~sp-~~~~~la~g--~~~~i~i  169 (427)
                      ....++++|+|+++++...++.|++|+.+........+.        ..+......++++| ++ .++++.  .++.|.+
T Consensus        92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g-~lyv~d~~~~~~I~~  170 (329)
T 3fvz_A           92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTG-AVFVSDGYCNSRIVQ  170 (329)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTC-CEEEEECSSCCEEEE
T ss_pred             CceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCC-eEEEEeCCCCCeEEE
Confidence            578999999999888888899999998764411122221        23444688999999 66 666665  3688999


Q ss_pred             EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC-C
Q 014302          170 WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT-G  248 (427)
Q Consensus       170 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~-g  248 (427)
                      |+.+  +.                        .+..+...           ..+.     .....+......++++|+ +
T Consensus       171 ~~~~--g~------------------------~~~~~~~~-----------g~~~-----~~~~~~~~~p~gia~d~~~g  208 (329)
T 3fvz_A          171 FSPS--GK------------------------FVTQWGEE-----------SSGS-----SPRPGQFSVPHSLALVPHLD  208 (329)
T ss_dssp             ECTT--SC------------------------EEEEECEE-----------CCSS-----SCCTTEESCEEEEEEETTTT
T ss_pred             EcCC--CC------------------------EEEEeccC-----------CCCC-----CCCCcccCCCcEEEEECCCC
Confidence            9854  10                        11111100           0000     000012234678999999 5


Q ss_pred             CEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEE------cCCceeeeeeeCCCCCCcccccc
Q 014302          249 DYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAF------AGSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       249 ~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~------~~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      ..+++...++.|++||..+++.....   .+...+.+++|+| +..+...+      .....+++|+..+...  .....
T Consensus       209 ~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~  285 (329)
T 3fvz_A          209 QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFK  285 (329)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEEC
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEc
Confidence            55557778889999999866653322   4566788999999 43333221      1112444554433210  00000


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      +       ...+...+..|+++|+|..+++   +..+   +.|++|++..
T Consensus       286 ~-------~~~~~~~p~~ia~~~dG~lyva---d~~~---~~I~~~~~~~  322 (329)
T 3fvz_A          286 P-------VRKHFDMPHDIVASEDGTVYIG---DAHT---NTVWKFTLTE  322 (329)
T ss_dssp             C-------SSSCCSSEEEEEECTTSEEEEE---ESSS---CCEEEEEEEE
T ss_pred             C-------CCCccCCeeEEEECCCCCEEEE---ECCC---CEEEEEeCCc
Confidence            0       0012236899999999955544   4444   4599999864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.14  E-value=5.4e-09  Score=92.57  Aligned_cols=198  Identities=12%  Similarity=0.067  Sum_probs=124.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .+.+++++++|+++++.. ++.|.+|+.+..  ............+.++++.|+| .++++. ..+.|.+|+..      
T Consensus        68 ~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~--~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~------  137 (270)
T 1rwi_B           68 QPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN--NQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAG------  137 (270)
T ss_dssp             SCCCEEECTTCCEEEEET-TTEEEEECTTCS--CCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTT------
T ss_pred             CcceeEECCCCCEEEEcC-CCEEEEEeCCCc--eEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECC------
Confidence            567899999999666555 889999887654  2222222333568999999998 455554 45788888654      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                         ..                .... .                         ..........++++++|+.+++...++.
T Consensus       138 ---~~----------------~~~~-~-------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~~~  172 (270)
T 1rwi_B          138 ---SK----------------TQTV-L-------------------------PFTGLNDPDGVAVDNSGNVYVTDTDNNR  172 (270)
T ss_dssp             ---CC----------------SCEE-C-------------------------CCCSCCSCCCEEECTTCCEEEEEGGGTE
T ss_pred             ---Cc----------------eeEe-e-------------------------ccccCCCceeEEEeCCCCEEEEECCCCE
Confidence               00                0000 0                         0001124567889999986666667889


Q ss_pred             EEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          260 FYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       260 v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      |.+||.......... .....+..++++++|..++ +...++.+..++........    .        ...+...+.++
T Consensus       173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v-~~~~~~~v~~~~~~~~~~~~----~--------~~~~~~~p~~i  239 (270)
T 1rwi_B          173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYV-TEHNTNQVVKLLAGSTTSTV----L--------PFTGLNTPLAV  239 (270)
T ss_dssp             EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEE-EETTTSCEEEECTTCSCCEE----C--------CCCSCSCEEEE
T ss_pred             EEEEecCCCceEeecccCCCCceEEEECCCCCEEE-EECCCCcEEEEcCCCCccee----e--------ccCCCCCceeE
Confidence            999998766543322 3336788999999996554 44555567766654331100    0        00111368999


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      +++++|+.+++   +..+   +.|++|++...+.
T Consensus       240 ~~~~~g~l~v~---~~~~---~~v~~~~~~~~~~  267 (270)
T 1rwi_B          240 AVDSDRTVYVA---DRGN---DRVVKLTSLEHHH  267 (270)
T ss_dssp             EECTTCCEEEE---EGGG---TEEEEECCCGGGS
T ss_pred             EECCCCCEEEE---ECCC---CEEEEEcCCCccc
Confidence            99999986655   3333   5699999876543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.12  E-value=8.4e-09  Score=105.36  Aligned_cols=236  Identities=11%  Similarity=0.060  Sum_probs=129.6

Q ss_pred             cCCCCEEEEEeCCCe---EEEEEccCC---CCcceee------ccCCcCCeeEEEEccCCCceEEEecC-----CeEEEE
Q 014302          108 HQHKHIVAFISGSTQ---VIVRDYEDS---GKDACIL------TSDSQRDVKVLEWRPNGGRSLSVGCK-----GGICIW  170 (427)
Q Consensus       108 sp~g~~lat~~~d~~---v~vwd~~~~---~~~~~~~------~~~~~~~v~~l~~sp~~~~~la~g~~-----~~i~iw  170 (427)
                      +|+|++++....++.   ..||..+..   ......+      ..+|...+..++|||||+.++.+..+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            489998887755432   556766532   1222222      22344468899999999544444332     358889


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY  250 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~  250 (427)
                      |+.         ++              +.  ..                           .......+..++|+|| +.
T Consensus       195 dl~---------tg--------------~~--~~---------------------------~~~~~~~~~~~~wspD-~~  221 (741)
T 1yr2_A          195 GVA---------DG--------------KP--LA---------------------------DELKWVKFSGLAWLGN-DA  221 (741)
T ss_dssp             ETT---------TC--------------CE--EE---------------------------EEEEEEESCCCEESTT-SE
T ss_pred             ECC---------CC--------------CC--CC---------------------------ccCCCceeccEEEECC-CE
Confidence            987         11              10  00                           0000111245778888 88


Q ss_pred             EEEEecCCc--------------EEEEEcCCCCcc-ccc----cCCCCeeEEEECCCCCEEEEEEcCC----ceeeeeee
Q 014302          251 FFAAKFDGT--------------FYLWETNTWTSE-PWS----STSGFVTGATWDPEGRMILLAFAGS----LTLGSIHF  307 (427)
Q Consensus       251 l~~~~~dg~--------------v~iwd~~~~~~~-~~~----~~~~~v~~v~~spdg~~l~~~~~~~----~~i~~~~~  307 (427)
                      |+.++.++.              |++|++.+.... ...    .+...+..+.|||||++|++...+.    ..++++++
T Consensus       222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~  301 (741)
T 1yr2_A          222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARV  301 (741)
T ss_dssp             EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEE
T ss_pred             EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEEC
Confidence            886665543              889998776642 111    2233588999999999998877543    36777777


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC--ceEEEeeeeeeeCCC
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT--PLISLSLIGFIRGPG  385 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~--~~~~~~~~~~~~~~~  385 (427)
                      .+.....   ..       ........+... ++|+|+.|++....+..  .+.|.+||+.++  ....+.+     .. 
T Consensus       302 ~~~~~~~---~~-------~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~--~~~l~~~d~~~~~~~~~~l~~-----~~-  362 (741)
T 1yr2_A          302 TNGKIGP---VT-------ALIPDLKAQWDF-VDGVGDQLWFVSGDGAP--LKKIVRVDLSGSTPRFDTVVP-----ES-  362 (741)
T ss_dssp             ETTEECC---CE-------EEECSSSSCEEE-EEEETTEEEEEECTTCT--TCEEEEEECSSSSCEEEEEEC-----CC-
T ss_pred             CCCCCcc---cE-------EecCCCCceEEE-EeccCCEEEEEECCCCC--CCEEEEEeCCCCccccEEEec-----CC-
Confidence            5531000   00       001111123333 34899999886443221  167999999774  2332221     11 


Q ss_pred             CCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          386 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       386 ~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                       ......+++.    .+.++.....+|...+|-+-
T Consensus       363 -~~~l~~~~~~----~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          363 -KDNLESVGIA----GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             -SSEEEEEEEE----BTEEEEEEEETTEEEEEEEE
T ss_pred             -CCeEEEEEEE----CCEEEEEEEECCEEEEEEEe
Confidence             1112234443    35677777778877766543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.11  E-value=8.9e-08  Score=87.51  Aligned_cols=232  Identities=13%  Similarity=0.104  Sum_probs=132.4

Q ss_pred             eeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          102 LQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       102 V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      ..+.+|+|++. ++.+...++.|.+|+...+  .....  .....+.+++|+|+| .++++. ..+|.+|+..       
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~--~~~~~--~~~~~v~~i~~~~dg-~l~v~~-~~gl~~~d~~-------  117 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASG--RKTVH--ALPFMGSALAKISDS-KQLIAS-DDGLFLRDTA-------  117 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTT--EEEEE--ECSSCEEEEEEEETT-EEEEEE-TTEEEEEETT-------
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCC--cEEEE--ECCCcceEEEEeCCC-eEEEEE-CCCEEEEECC-------
Confidence            46789999865 5556667889999988765  22222  234579999999999 555554 4568888875       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec----
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF----  256 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~----  256 (427)
                        ++              ....+...              +.+          .....+..++++|+|+++++...    
T Consensus       118 --~g--------------~~~~~~~~--------------~~~----------~~~~~~~~i~~d~~G~l~v~~~~~~~~  157 (326)
T 2ghs_A          118 --TG--------------VLTLHAEL--------------ESD----------LPGNRSNDGRMHPSGALWIGTMGRKAE  157 (326)
T ss_dssp             --TC--------------CEEEEECS--------------STT----------CTTEEEEEEEECTTSCEEEEEEETTCC
T ss_pred             --CC--------------cEEEEeeC--------------CCC----------CCCCCCCCEEECCCCCEEEEeCCCcCC
Confidence              11              11111000              000          00124667888999886664432    


Q ss_pred             --CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC-Cccccccccccccceee-ccC
Q 014302          257 --DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP-SLDAHLLPVDLPDIVSL-TGS  332 (427)
Q Consensus       257 --dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~  332 (427)
                        .+.|..+|  +++...+.........++|+|||+.|+++....+.|+.+++..... .+.....      ...+ ...
T Consensus       158 ~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~------~~~~~~~~  229 (326)
T 2ghs_A          158 TGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEV------FIDSTGIK  229 (326)
T ss_dssp             TTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEE------EEECTTSS
T ss_pred             CCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceE------EEECCCCC
Confidence              23455555  3333333233345678999999998887766666888887751111 1100000      0001 112


Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec-cCCCCCceeEEEeeC
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH-DKFKQGPLLSVCWSS  411 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~g~~l~v~~~~  411 (427)
                      +.+..++++++|.+.++...+      +.|.+|+. .+..+..     +..+.  ..+.+++|. ++   +..|.|+...
T Consensus       230 ~~p~gi~~d~~G~lwva~~~~------~~v~~~d~-~g~~~~~-----i~~~~--~~~~~~af~g~d---~~~L~vt~~~  292 (326)
T 2ghs_A          230 GGMDGSVCDAEGHIWNARWGE------GAVDRYDT-DGNHIAR-----YEVPG--KQTTCPAFIGPD---ASRLLVTSAR  292 (326)
T ss_dssp             SEEEEEEECTTSCEEEEEETT------TEEEEECT-TCCEEEE-----EECSC--SBEEEEEEESTT---SCEEEEEEBC
T ss_pred             CCCCeeEECCCCCEEEEEeCC------CEEEEECC-CCCEEEE-----EECCC--CCcEEEEEecCC---CCEEEEEecC
Confidence            356789999999877764322      34999998 4444321     22222  236688887 54   4455555443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.07  E-value=2e-08  Score=90.31  Aligned_cols=193  Identities=13%  Similarity=0.135  Sum_probs=116.4

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC----CcCCeeEEEEccCCCceEEEecC-C----------
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD----SQRDVKVLEWRPNGGRSLSVGCK-G----------  165 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~----~~~~v~~l~~sp~~~~~la~g~~-~----------  165 (427)
                      .+.+++++|+|+++++...++.|.+||..++.  ...+...    ....+.+++++|+| +++++... +          
T Consensus        70 ~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~  146 (296)
T 3e5z_A           70 HQNGHCLNKQGHLIACSHGLRRLERQREPGGE--WESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGG  146 (296)
T ss_dssp             SEEEEEECTTCCEEEEETTTTEEEEECSTTCC--EEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCC
T ss_pred             CcceeeECCCCcEEEEecCCCeEEEEcCCCCc--EEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccc
Confidence            58899999999988877777899999986652  2222111    12356789999999 56665211 1          


Q ss_pred             -----eEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeE
Q 014302          166 -----GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLS  240 (427)
Q Consensus       166 -----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~  240 (427)
                           .-.||.++                                               ++|+.    ..+..+.....
T Consensus       147 ~~~~~~~~l~~~~-----------------------------------------------~~g~~----~~~~~~~~~~~  175 (296)
T 3e5z_A          147 EMELPGRWVFRLA-----------------------------------------------PDGTL----SAPIRDRVKPN  175 (296)
T ss_dssp             CCCSSSCEEEEEC-----------------------------------------------TTSCE----EEEECCCSSEE
T ss_pred             cccCCCcEEEEEC-----------------------------------------------CCCCE----EEeecCCCCCc
Confidence                 12344443                                               11100    01111233457


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcC-CCCc----cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETN-TWTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~-~~~~----~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      .++|+|+|+.|++.+.++.|++||+. .++.    ..+..+...+..++++++|+.+++.   ++.+.+|+...+   . 
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~---~~~v~~~~~~g~---~-  248 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA---GDGVHVLTPDGD---E-  248 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE---TTEEEEECTTSC---E-
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc---CCeEEEECCCCC---E-
Confidence            89999999988777778999999986 3332    1112244556789999999876644   335665554321   1 


Q ss_pred             ccccccccccceeeccCCceeEEEE-CCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAW-DASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~-sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                                ...+.....+.+++| +|+++.|.++.   .+    .|.-++.++..
T Consensus       249 ----------~~~~~~~~~~~~~~f~~~d~~~L~v~t---~~----~l~~~~~~~~~  288 (296)
T 3e5z_A          249 ----------LGRVLTPQTTSNLCFGGPEGRTLYMTV---ST----EFWSIETNVRG  288 (296)
T ss_dssp             ----------EEEEECSSCCCEEEEESTTSCEEEEEE---TT----EEEEEECSCCB
T ss_pred             ----------EEEEECCCCceeEEEECCCCCEEEEEc---CC----eEEEEEccccc
Confidence                      111111113789999 69999998852   22    25555665544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.06  E-value=2.9e-08  Score=90.84  Aligned_cols=206  Identities=8%  Similarity=0.011  Sum_probs=124.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCccee-eccCC----cCCeeEEEEccCCCceEEEec--CCeEEEEecc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI-LTSDS----QRDVKVLEWRPNGGRSLSVGC--KGGICIWAPS  173 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~-~~~~~----~~~v~~l~~sp~~~~~la~g~--~~~i~iw~~~  173 (427)
                      ....+++++++++.++...++.|.+||..+.  .... +..+.    ......+++ .++ +++++..  ++.|.++|..
T Consensus        85 ~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~--~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           85 SPRYIHFLSDEKAYVTQIWDYRIFIINPKTY--EITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             SEEEEEEEETTEEEEEEBSCSEEEEEETTTT--EEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETT
T ss_pred             CCcEEEEeCCCeEEEEECCCCeEEEEECCCC--eEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECC
Confidence            5788999999954444447899999998876  2221 11111    114566777 344 6666653  6889999986


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                               ++                .....+.                          . ......++++|+|+++++
T Consensus       161 ---------t~----------------~~~~~i~--------------------------~-g~~p~~i~~~~dG~l~v~  188 (328)
T 3dsm_A          161 ---------TD----------------KVVDELT--------------------------I-GIQPTSLVMDKYNKMWTI  188 (328)
T ss_dssp             ---------TT----------------EEEEEEE--------------------------C-SSCBCCCEECTTSEEEEE
T ss_pred             ---------CC----------------eEEEEEE--------------------------c-CCCccceEEcCCCCEEEE
Confidence                     11                1111111                          0 112346778899986665


Q ss_pred             EecC----------CcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccc
Q 014302          254 AKFD----------GTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV  321 (427)
Q Consensus       254 ~~~d----------g~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  321 (427)
                      +..+          +.|.++|..+.+.....  ........++|+|+++.|+++..   .++.++....... .....  
T Consensus       189 ~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~-~~~~~--  262 (328)
T 3dsm_A          189 TDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVP-VRPFL--  262 (328)
T ss_dssp             BCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCC-SSCSB--
T ss_pred             ECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCcee-eeeee--
Confidence            5544          78999999887764332  22347889999999999887543   5666666543210 00000  


Q ss_pred             ccccceeeccCCceeEEEECCCCCEEEEEEec--CCCcceeEEEEEEeccCceEEEeeee
Q 014302          322 DLPDIVSLTGSQGIEKIAWDASGERLAVSYKG--GDDIYKGLIAIYDARRTPLISLSLIG  379 (427)
Q Consensus       322 ~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~--~~d~~~g~i~vwd~~~~~~~~~~~~~  379 (427)
                        .     ........++++|++..|.++...  ..+   +.|.+||.. ++++...+.|
T Consensus       263 --~-----~~~~~p~gi~vdp~~g~lyva~~~~y~~~---~~V~v~d~~-g~~~~~i~~G  311 (328)
T 3dsm_A          263 --E-----FRDTKYYGLTVNPNNGEVYVADAIDYQQQ---GIVYRYSPQ-GKLIDEFYVG  311 (328)
T ss_dssp             --C-----CCSSCEEEEEECTTTCCEEEEECTTSSSE---EEEEEECTT-CCEEEEEEEE
T ss_pred             --c-----CCCCceEEEEEcCCCCeEEEEcccccccC---CEEEEECCC-CCEEEEEEec
Confidence              0     013467899999966666554200  222   789999998 6665444333

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.05  E-value=4.6e-08  Score=88.51  Aligned_cols=229  Identities=11%  Similarity=0.129  Sum_probs=134.2

Q ss_pred             ceeeeEEcCCCC-EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKH-IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~-~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      ......|+|+|+ ++++...++.|..|+.. +  .. .....+...+..++|+++| +++++.. .+.|.+|+.+  +. 
T Consensus        46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g--~~-~~~~~~~~~~~gl~~d~dG-~l~v~~~~~~~v~~~~~~--g~-  117 (305)
T 3dr2_A           46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G--TV-DVLLDATAFTNGNAVDAQQ-RLVHCEHGRRAITRSDAD--GQ-  117 (305)
T ss_dssp             SEEEEEEEGGGTEEEEEETTTTEEEEEETT-S--CE-EEEEESCSCEEEEEECTTS-CEEEEETTTTEEEEECTT--SC-
T ss_pred             CccCCeEeCCCCEEEEEECCCCEEEEEeCC-C--CE-EEEeCCCCccceeeECCCC-CEEEEECCCCEEEEECCC--CC-
Confidence            456889999998 56667778999999863 3  12 2222345578999999999 5666554 3778888764  10 


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE----E
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA----A  254 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~----~  254 (427)
                                           ...+   ...         .  .+          .....+..++++|+|+..++    |
T Consensus       118 ---------------------~~~~---~~~---------~--~~----------~~~~~~~~i~~d~dG~l~~td~~~g  152 (305)
T 3dr2_A          118 ---------------------AHLL---VGR---------Y--AG----------KRLNSPNDLIVARDGAIWFTDPPFG  152 (305)
T ss_dssp             ---------------------EEEE---ECE---------E--TT----------EECSCCCCEEECTTSCEEEECCSGG
T ss_pred             ---------------------EEEE---Eec---------c--CC----------CccCCCCCEEECCCCCEEEeCcCCC
Confidence                                 0000   000         0  00          01123556778888876665    2


Q ss_pred             ec-------------CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC-----ceeeeeeeCCCCCCccc
Q 014302          255 KF-------------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-----LTLGSIHFASKPPSLDA  316 (427)
Q Consensus       255 ~~-------------dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~-----~~i~~~~~~~~~~~~~~  316 (427)
                      ..             .+.|..||..+++..... .......++|+|||+.|+++....     ..|+.+++....  +..
T Consensus       153 ~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~  229 (305)
T 3dr2_A          153 LRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHD  229 (305)
T ss_dssp             GSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEE
T ss_pred             ccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccC
Confidence            21             245777776666554333 344567899999999888776542     467777765431  111


Q ss_pred             cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302          317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  396 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  396 (427)
                      .....       ....+.+..++++++|++.++   . .+    .|.+|+.. +..+.     .+..+.   .+.+++|.
T Consensus       230 ~~~~~-------~~~~~~pdgi~~d~~G~lwv~---~-~~----gv~~~~~~-g~~~~-----~~~~~~---~~~~~~f~  285 (305)
T 3dr2_A          230 RRHFA-------SVPDGLPDGFCVDRGGWLWSS---S-GT----GVCVFDSD-GQLLG-----HIPTPG---TASNCTFD  285 (305)
T ss_dssp             EEEEE-------CCSSSCCCSEEECTTSCEEEC---C-SS----EEEEECTT-SCEEE-----EEECSS---CCCEEEEC
T ss_pred             CeEEE-------ECCCCCCCeEEECCCCCEEEe---c-CC----cEEEECCC-CCEEE-----EEECCC---ceeEEEEe
Confidence            00000       001234578999999995544   2 22    29999985 44332     222222   25578887


Q ss_pred             cCCCCCceeEEEeeCc
Q 014302          397 DKFKQGPLLSVCWSSG  412 (427)
Q Consensus       397 ~~~~~g~~l~v~~~~g  412 (427)
                      ++   +..|.++.+++
T Consensus       286 ~d---~~~L~it~~~~  298 (305)
T 3dr2_A          286 QA---QQRLFITGGPC  298 (305)
T ss_dssp             TT---SCEEEEEETTE
T ss_pred             CC---CCEEEEEcCCe
Confidence            54   56677776654

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.05  E-value=3e-07  Score=82.37  Aligned_cols=235  Identities=13%  Similarity=0.065  Sum_probs=144.2

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCccee-eccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCC
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  177 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~  177 (427)
                      ..+.++++.++|++.++...++.|.+|+.. .  .... ........+.++++.+++ .++++.. .+.|..|+.+  + 
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~--~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~--g-   92 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-G--RIKEFEVPTPDAKVMCLIVSSLG-DIWFTENGANKIGKLSKK--G-   92 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-S--CEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT--S-
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-C--ceEEEECCCCCCcceeEEECCCC-CEEEEecCCCeEEEECCC--C-
Confidence            367899999999977777678999998876 3  2222 122234578999999998 5555544 5778888764  0 


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                                           .....   .           . +            .....+..++++++|+.+++...+
T Consensus        93 ---------------------~~~~~---~-----------~-~------------~~~~~~~~i~~~~~g~l~v~~~~~  124 (300)
T 2qc5_A           93 ---------------------GFTEY---P-----------L-P------------QPDSGPYGITEGLNGDIWFTQLNG  124 (300)
T ss_dssp             ---------------------CEEEE---E-----------C-S------------STTCCEEEEEECSTTCEEEEETTT
T ss_pred             ---------------------CeEEe---c-----------C-C------------CCCCCCccceECCCCCEEEEccCC
Confidence                                 00000   0           0 0            012346788899999877776667


Q ss_pred             CcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302          258 GTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                      +.|..||.. ++...+.  .....+..+++.++|+..+ +....+.+..++....   +..    ...     ......+
T Consensus       125 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~~g~---~~~----~~~-----~~~~~~~  190 (300)
T 2qc5_A          125 DRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWF-TENQNNSIGRITNTGK---LEE----YPL-----PTNAAAP  190 (300)
T ss_dssp             TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECTTCC---EEE----EEC-----SSTTCCE
T ss_pred             CeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEE-EecCCCeEEEECCCCc---EEE----eeC-----CCCCCCc
Confidence            889999886 4443222  2456788999999999544 4454556666655211   110    000     0112367


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEE
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  415 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~  415 (427)
                      ..++++++|...++   ....   +.|.+|+. ++......      .+.....+.++++.++   |.++...+.++.|.
T Consensus       191 ~~i~~d~~g~l~v~---~~~~---~~i~~~~~-~g~~~~~~------~~~~~~~~~~i~~d~~---g~l~v~~~~~~~i~  254 (300)
T 2qc5_A          191 VGITSGNDGALWFV---EIMG---NKIGRITT-TGEISEYD------IPTPNARPHAITAGKN---SEIWFTEWGANQIG  254 (300)
T ss_dssp             EEEEECTTSSEEEE---ETTT---TEEEEECT-TCCEEEEE------CSSTTCCEEEEEECST---TCEEEEETTTTEEE
T ss_pred             ceEEECCCCCEEEE---ccCC---CEEEEEcC-CCcEEEEE------CCCCCCCceEEEECCC---CCEEEeccCCCeEE
Confidence            89999999987766   3222   45999988 44443221      1112234678888765   55555555567887


Q ss_pred             EEec
Q 014302          416 TYPL  419 (427)
Q Consensus       416 ~~~~  419 (427)
                      .|+.
T Consensus       255 ~~~~  258 (300)
T 2qc5_A          255 RITN  258 (300)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            7763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.03  E-value=3.4e-07  Score=85.18  Aligned_cols=244  Identities=14%  Similarity=-0.000  Sum_probs=134.4

Q ss_pred             eeEEcCCCCEEEEEe----------CCCeEEEEEccCCCCcceeecc--C---CcCCeeEEEEccCCCceEEEec--CCe
Q 014302          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTS--D---SQRDVKVLEWRPNGGRSLSVGC--KGG  166 (427)
Q Consensus       104 ~l~~sp~g~~lat~~----------~d~~v~vwd~~~~~~~~~~~~~--~---~~~~v~~l~~sp~~~~~la~g~--~~~  166 (427)
                      .+++||||++|+++.          .++.|.+||..+..........  .   +...-..++|+|||+.++++..  .+.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            789999999988875          3678999998765111111111  0   0123457899999965555543  367


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeeh-hcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEc
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF-LRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWS  245 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~s  245 (427)
                      |.++| .         ++                +.+.. +...                              .++.+.
T Consensus       150 v~viD-~---------t~----------------~~~~~~i~~~------------------------------~~~~~~  173 (373)
T 2mad_H          150 VGLVV-Q---------GG----------------SSDDQLLSSP------------------------------TCYHIH  173 (373)
T ss_pred             EEEEE-C---------CC----------------CEEeEEcCCC------------------------------ceEEEE
Confidence            88988 7         11                11111 1100                              013344


Q ss_pred             cCCCE-EEEEecCCcEEEEEcCCCCccccc------cCCCC-eeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccc
Q 014302          246 PTGDY-FFAAKFDGTFYLWETNTWTSEPWS------STSGF-VTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  317 (427)
Q Consensus       246 p~g~~-l~~~~~dg~v~iwd~~~~~~~~~~------~~~~~-v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~  317 (427)
                      |+++. +++.+.||.+.++|. +++.....      ..... .....+.+++..+++.+ ..+.+..+++......... 
T Consensus       174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~-  250 (373)
T 2mad_H          174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKA-  250 (373)
T ss_pred             eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEee-
Confidence            55543 335566777888887 55433111      11111 23355677776665554 3447777777543211100 


Q ss_pred             ccccccccce---eeccCCceeEEEECCCCCEEEEEEecCCC----cceeEEEEEEeccCceEEEeeeeeeeCCCCCCCc
Q 014302          318 LLPVDLPDIV---SLTGSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP  390 (427)
Q Consensus       318 ~~~~~~~~~~---~~~~~~~i~~v~~sp~g~~La~~~~~~~d----~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  390 (427)
                        .+++....   ..........++++||++.|.+......+    ...+.|.++|+.+++.+...+.+.        .+
T Consensus       251 --~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~--------~p  320 (373)
T 2mad_H          251 --PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH--------DV  320 (373)
T ss_pred             --eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC--------Cc
Confidence              01000000   00011234558899999988875321100    011469999999988764333221        36


Q ss_pred             eeEEeccCCCCCc-eeEEEe-eCceEEEEec
Q 014302          391 VAFSFHDKFKQGP-LLSVCW-SSGFCCTYPL  419 (427)
Q Consensus       391 ~~~~f~~~~~~g~-~l~v~~-~~g~i~~~~~  419 (427)
                      ..++|.|+   |. +|-++. .++.|.+|++
T Consensus       321 ~~i~~s~D---g~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          321 DAISVAQD---GGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             CeEEECCC---CCeEEEEEcCCCCeEEEEEC
Confidence            68999886   55 565655 6899999985

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.97  E-value=2.1e-07  Score=82.86  Aligned_cols=187  Identities=11%  Similarity=0.044  Sum_probs=112.3

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCc-CCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccc
Q 014302          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ-RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASF  188 (427)
Q Consensus       110 ~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~  188 (427)
                      .+++|++++.|+.|.+||.+++  +..-....+. ..+.+++++|+| ++|+ +.++.|..||.+               
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG--~~~w~~~~~~~~~~~~~~~~pdG-~ilv-s~~~~V~~~d~~---------------   64 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK--EIVWEYPLEKGWECNSVAATKAG-EILF-SYSKGAKMITRD---------------   64 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT--EEEEEEECCTTCCCCEEEECTTS-CEEE-ECBSEEEEECTT---------------
T ss_pred             CCcEEEeeCCCCEEEEEECCCC--eEEEEeCCCccCCCcCeEECCCC-CEEE-eCCCCEEEECCC---------------
Confidence            4678999999999999998776  3332222333 468899999999 6777 446778888764               


Q ss_pred             cccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec-CCcEEEEEcCC
Q 014302          189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-DGTFYLWETNT  267 (427)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-dg~v~iwd~~~  267 (427)
                              +.   .+..+..+                         ....+.++.+.++|+.+++.+. ++.|..+|. .
T Consensus        65 --------G~---~~W~~~~~-------------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~  107 (276)
T 3no2_A           65 --------GR---ELWNIAAP-------------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-K  107 (276)
T ss_dssp             --------SC---EEEEEECC-------------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-T
T ss_pred             --------CC---EEEEEcCC-------------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-C
Confidence                    10   11111111                         0113456667777777776655 555655554 2


Q ss_pred             CCc-cccc------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEE
Q 014302          268 WTS-EPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW  340 (427)
Q Consensus       268 ~~~-~~~~------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  340 (427)
                      ++. ..+.      .+......+++.++|+++++. ..++.+..++...+ .             ...+.....+.++..
T Consensus       108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~-~~~~~v~~~d~~G~-~-------------~w~~~~~~~~~~~~~  172 (276)
T 3no2_A          108 GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPL-FATSEVREIAPNGQ-L-------------LNSVKLSGTPFSSAF  172 (276)
T ss_dssp             SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEE-TTTTEEEEECTTSC-E-------------EEEEECSSCCCEEEE
T ss_pred             CCEEEEEeccCCCCcccccccCceECCCCCEEEEe-cCCCEEEEECCCCC-E-------------EEEEECCCCccceeE
Confidence            322 1111      111234566789999998765 44556666665422 1             111111234567788


Q ss_pred             CCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          341 DASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       341 sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      .++|+.|++   +..+   +.|..+|..+++.+
T Consensus       173 ~~~g~~~v~---~~~~---~~v~~~d~~tG~~~  199 (276)
T 3no2_A          173 LDNGDCLVA---CGDA---HCFVQLNLESNRIV  199 (276)
T ss_dssp             CTTSCEEEE---CBTT---SEEEEECTTTCCEE
T ss_pred             cCCCCEEEE---eCCC---CeEEEEeCcCCcEE
Confidence            899999887   4443   56999999888765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.94  E-value=8.4e-08  Score=89.02  Aligned_cols=220  Identities=12%  Similarity=0.109  Sum_probs=120.5

Q ss_pred             ceeeeEEcCCCCEEEEEeC--CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCc-eEEEecCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISG--STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGR-SLSVGCKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~-~la~g~~~~i~iw~~~~~~~  177 (427)
                      ....++|+|||++|+++..  +++|.+||+...  +.......+. ....+.+.|++.. +++.+.++.+.+|+.+..+.
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~--~~~~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~  185 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG--DYVEDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK  185 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTT--EEEEEEGGGT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCC--cEEEEEecCC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence            4678999999999988864  689999999876  2322201111 2233567777644 44445668888887753232


Q ss_pred             cccc-------ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEe----------ccCCeE
Q 014302          178 AASV-------RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRR----------GFGGLS  240 (427)
Q Consensus       178 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~----------~~~~v~  240 (427)
                      ....       ..+..........++. .+...    .. ...+..+.+..+...+..  .+..          ...+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~----~~-~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~p~g~~  257 (361)
T 2oiz_A          186 VASQSRSKQMFSVKDDPIFIAPALDKD-KAHFV----SY-YGNVYSADFSGDEVKVDG--PWSLLNDEDKAKNWVPGGYN  257 (361)
T ss_dssp             EEEEEECCCCSCTTTSCBCSCCEECSS-EEEEE----BT-TSEEEEEECSSSSCEEEE--EEESCCHHHHHTTCEECCSS
T ss_pred             EeeeccccceEcCCCCceEEEecccCC-EEEEE----eC-CCeEEEEEecCCCceecc--cccccCccccccccccCCee
Confidence            1100       0000000000001110 00000    01 223444444433211100  0000          011222


Q ss_pred             EEEEccCCCEEEEEec-----------CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          241 ILKWSPTGDYFFAAKF-----------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      .++++|+++.++++..           .+.|.+||+.+.+......... ..+++|+|||++|+++. . +.+.+|+..+
T Consensus       258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n-~-~~v~v~D~~t  334 (361)
T 2oiz_A          258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD-G-GNVNVYDISQ  334 (361)
T ss_dssp             CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC-S-SCEEEEECSS
T ss_pred             EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC-C-CeEEEEECCC
Confidence            4789999998886543           3479999999988754443333 99999999999888665 4 6788887655


Q ss_pred             CCCCccccccccccccceee-ccCCceeEEEECCCCC
Q 014302          310 KPPSLDAHLLPVDLPDIVSL-TGSQGIEKIAWDASGE  345 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~g~  345 (427)
                      ...+.           ...+ ..+.....++++|+|+
T Consensus       335 ~~l~~-----------~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          335 PEPKL-----------LRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SSCEE-----------EEEETTSCSSEEEEEECCCSC
T ss_pred             Cccee-----------eEEeccCCCCcEEEEecCCCC
Confidence            31111           1121 2344778999999986

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.92  E-value=8e-08  Score=88.51  Aligned_cols=249  Identities=12%  Similarity=0.049  Sum_probs=140.1

Q ss_pred             ceeeeEEcCCCCEEEEEe--CCCeEEEEEccCCCCccee------eccCCcCCeeEEEEccCCCceEEEec------CCe
Q 014302          101 DLQGVSWHQHKHIVAFIS--GSTQVIVRDYEDSGKDACI------LTSDSQRDVKVLEWRPNGGRSLSVGC------KGG  166 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~--~d~~v~vwd~~~~~~~~~~------~~~~~~~~v~~l~~sp~~~~~la~g~------~~~  166 (427)
                      .+..++++|+|+.+++..  .++.++||.++.+  ....      ....+...+..+++.+++ +++++..      ...
T Consensus        18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g--~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~   94 (343)
T 2qe8_A           18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQD--GLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPK   94 (343)
T ss_dssp             CEEEEEECTTSCEEEEECGGGCCSCSEEEEETT--EEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCCE
T ss_pred             CcceEEECCCCCEEEEeCCCCCCceEEEEECCC--CeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCe
Confidence            468899999999888763  2343667777632  1110      111345679999999998 5655442      467


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP  246 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp  246 (427)
                      |.+||+.         ++                ..+..+.           +...         ...+......+++++
T Consensus        95 i~~~d~~---------tg----------------~~~~~~~-----------~~~~---------~~~~~~~~~~v~vd~  129 (343)
T 2qe8_A           95 LVAWDTL---------NN----------------QLSRVIY-----------LPPP---------ITLSNSFVNDLAVDL  129 (343)
T ss_dssp             EEEEETT---------TT----------------EEEEEEE-----------CCTT---------TSCTTCCCCEEEEET
T ss_pred             EEEEECC---------CC----------------eEEEEEE-----------CChh---------hcccccccceEEEec
Confidence            8889876         11                1111111           1000         001123456788888


Q ss_pred             CCCEEE-EEe---cCCcEEEEEcCCCCccccc-c-----------------------------CCCCeeEEEECCCCCEE
Q 014302          247 TGDYFF-AAK---FDGTFYLWETNTWTSEPWS-S-----------------------------TSGFVTGATWDPEGRMI  292 (427)
Q Consensus       247 ~g~~l~-~~~---~dg~v~iwd~~~~~~~~~~-~-----------------------------~~~~v~~v~~spdg~~l  292 (427)
                      ++..++ +..   .++.|.+||+.+++...+. .                             ....+..++|+|||+.|
T Consensus       130 ~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l  209 (343)
T 2qe8_A          130 IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL  209 (343)
T ss_dssp             TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE
T ss_pred             CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEE
Confidence            765655 444   5788999998766532211 0                             01235789999999999


Q ss_pred             EEEEcCCceeeeeeeCCC-CCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          293 LLAFAGSLTLGSIHFASK-PPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       293 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      +++......++.++.... ...+.....   ..........+....++++++|..+++   ....   +.|.+||.+++.
T Consensus       210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~g~~g~pdgia~d~~G~l~va---~~~~---~~V~~~d~~~G~  280 (343)
T 2qe8_A          210 YLSPMHSTSMYRIKSADLSNLQLTDAEL---GSKIERYSEKPICDGISIDKDHNIYVG---DLAH---SAIGVITSADRA  280 (343)
T ss_dssp             EEEESSCSEEEEEEHHHHTCTTCCHHHH---HTTCEEEEECCSCSCEEECTTCCEEEE---EGGG---TEEEEEETTTTE
T ss_pred             EEEeCCCCeEEEEEHHHhcCCCCChhhh---hcceEecccCCCCceEEECCCCCEEEE---ccCC---CeEEEEECCCCC
Confidence            887766666666654211 011100000   000011112235678999999987776   3333   569999985554


Q ss_pred             eEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEE
Q 014302          372 LISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCC  415 (427)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~  415 (427)
                      ...+     +..+ ....|..++|.++   |.++.+....+++.
T Consensus       281 ~~~~-----~~~~-~~~~p~~va~~~~---g~l~v~~~~~~~~~  315 (343)
T 2qe8_A          281 YKLL-----VTDE-KLSWTDSFNFGSD---GYLYFDCNQLHHSA  315 (343)
T ss_dssp             EEEE-----EECG-GGSCEEEEEECTT---SCEEEEECCGGGSG
T ss_pred             EEEE-----EECC-ceecCCeeEECCC---CcEEEEeCcccccc
Confidence            3222     1112 1223668888874   66666665554443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.90  E-value=1.4e-06  Score=80.39  Aligned_cols=273  Identities=13%  Similarity=0.057  Sum_probs=145.0

Q ss_pred             EEcCCCCEEEEEeC-----CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec----------CCeEEEE
Q 014302          106 SWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIW  170 (427)
Q Consensus       106 ~~sp~g~~lat~~~-----d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~----------~~~i~iw  170 (427)
                      ...|++.++.+...     ++.|.+.|..+.  +.......-..+  .++++|||+.++++..          ++.|.+|
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~--~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTT--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECCCC--eEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence            34789998877755     678999887766  332222222223  4999999966655542          3679999


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccC------CCceeeeEeCCCCCCcccC---------------
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN------GEQITALSWGPDGRFPGLG---------------  229 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~spdg~~l~~~---------------  229 (427)
                      |..         +.                ..+..+.-..      ......++++|||+++...               
T Consensus       115 D~~---------t~----------------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t  169 (386)
T 3sjl_D          115 DPV---------TL----------------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG  169 (386)
T ss_dssp             CTT---------TC----------------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             ECC---------CC----------------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCC
Confidence            987         11                1222121110      1234567888888853211               


Q ss_pred             -ceEEec-cCCeEEEEEccCCCEEEEEecCCcEEEEEcCC-CCcc----ccc-cCCCCe-eEEEE-CCCCCEEEEEEcCC
Q 014302          230 -TPIRRG-FGGLSILKWSPTGDYFFAAKFDGTFYLWETNT-WTSE----PWS-STSGFV-TGATW-DPEGRMILLAFAGS  299 (427)
Q Consensus       230 -~~~~~~-~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~-~~~~----~~~-~~~~~v-~~v~~-spdg~~l~~~~~~~  299 (427)
                       ..+..- ..+. ...+....+.+++.+.||.+.+.++.. ++..    ... .....+ ....| .++|++++ .+. +
T Consensus       170 ~~vv~tI~v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~-~  246 (386)
T 3sjl_D          170 KAFKRMLDVPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTY-T  246 (386)
T ss_dssp             TEEEEEEECCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBT-T
T ss_pred             CcEEEEEECCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeC-C
Confidence             111110 0111 112222345566667788877777765 3321    011 111222 12455 36776554 333 4


Q ss_pred             ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCC----CcceeEEEEEEeccCceEEE
Q 014302          300 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGD----DIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       300 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~----d~~~g~i~vwd~~~~~~~~~  375 (427)
                      +.++.+++......+..............-...+....++++++++.|.+......    ......|.++|+++++++..
T Consensus       247 g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~  326 (386)
T 3sjl_D          247 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAK  326 (386)
T ss_dssp             SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEE
T ss_pred             CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEE
Confidence            57888887654221110000000000000001124456888999999998653210    00125699999999998866


Q ss_pred             eeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          376 SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .+.|-        .+..++|.++- ...|++..+.++.|.+|+.
T Consensus       327 i~vg~--------~~~~lavs~D~-~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          327 FEMGH--------EIDSINVSQDE-KPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             EEEEE--------EECEEEECSSS-SCEEEEEETTTTEEEEEET
T ss_pred             EECCC--------CcceEEECCCC-CeEEEEEcCCCCeEEEEEC
Confidence            66553        25578888762 1134555677999999985

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.90  E-value=1.7e-07  Score=86.56  Aligned_cols=226  Identities=14%  Similarity=0.054  Sum_probs=127.8

Q ss_pred             eeEEcCCCCEEEEEe----------CCCeEEEEEccCCCCcceeec-cC------CcCCeeEEEEccCCCceEEEec--C
Q 014302          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILT-SD------SQRDVKVLEWRPNGGRSLSVGC--K  164 (427)
Q Consensus       104 ~l~~sp~g~~lat~~----------~d~~v~vwd~~~~~~~~~~~~-~~------~~~~v~~l~~sp~~~~~la~g~--~  164 (427)
                      .++++|||++|.++.          .++.|.+||..+.  +..... .+      ....-..++|+|||++++++..  .
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~--~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~  159 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL--LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  159 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC--CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence            389999999887764          3678999998877  222211 11      1124567999999966665543  4


Q ss_pred             CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCC---ce---eeeEeCCCCCCcc----c-CceEE
Q 014302          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGE---QI---TALSWGPDGRFPG----L-GTPIR  233 (427)
Q Consensus       165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v---~~~~~spdg~~l~----~-~~~~~  233 (427)
                      +.|.++|+.         ++                +.+..+......   +.   .-++.++||+++.    . +....
T Consensus       160 ~~VsVID~~---------t~----------------~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          160 PAVGVVDLE---------GK----------------AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             CEEEEEETT---------TT----------------EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CeEEEEECC---------CC----------------cEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEE
Confidence            789999987         11                111111110000   00   0124455555421    1 11111


Q ss_pred             ---ecc----CCeE-EEEEc-cCCCEEEEEecCCcEEEEEcCCCCcc---ccc----------cCCCCeeEEEECCCCCE
Q 014302          234 ---RGF----GGLS-ILKWS-PTGDYFFAAKFDGTFYLWETNTWTSE---PWS----------STSGFVTGATWDPEGRM  291 (427)
Q Consensus       234 ---~~~----~~v~-~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~~---~~~----------~~~~~v~~v~~spdg~~  291 (427)
                         .+.    ..+. ...|. ++|++++ .+.+|.|++.|+.+....   .+.          -.......++++++++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~  293 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR  293 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred             eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence               011    1111 23554 6776555 455899999999766431   111          01123345777899998


Q ss_pred             EEEEEcC---------CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeE
Q 014302          292 ILLAFAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGL  361 (427)
Q Consensus       292 l~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~  361 (427)
                      ++.+..+         ...+.++++...+.             ...+..+..+.+|++++|++ +|.++..++     +.
T Consensus       294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv-------------~~~i~vg~~~~~lavs~D~~~~ly~tn~~~-----~~  355 (386)
T 3sjl_D          294 IYLLVDQRDEWRHKTASRFVVVLDAKTGER-------------LAKFEMGHEIDSINVSQDEKPLLYALSTGD-----KT  355 (386)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCE-------------EEEEEEEEEECEEEECSSSSCEEEEEETTT-----TE
T ss_pred             EEEEeccccccccCCCCCEEEEEECCCCeE-------------EEEEECCCCcceEEECCCCCeEEEEEcCCC-----Ce
Confidence            8876532         13566666655421             12222334788999999997 666643223     56


Q ss_pred             EEEEEeccCceEEE
Q 014302          362 IAIYDARRTPLISL  375 (427)
Q Consensus       362 i~vwd~~~~~~~~~  375 (427)
                      |.++|..+++.+..
T Consensus       356 VsViD~~t~k~~~~  369 (386)
T 3sjl_D          356 LYIHDAESGEELRS  369 (386)
T ss_dssp             EEEEETTTCCEEEE
T ss_pred             EEEEECCCCcEEEE
Confidence            99999999887633

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.89  E-value=2.6e-07  Score=86.05  Aligned_cols=160  Identities=14%  Similarity=0.158  Sum_probs=94.9

Q ss_pred             eEEEEEccCCCEEEEEe-------------------cCCcEEEEEcCCCCccccccCC---CCeeEEEE--CCCCCEEEE
Q 014302          239 LSILKWSPTGDYFFAAK-------------------FDGTFYLWETNTWTSEPWSSTS---GFVTGATW--DPEGRMILL  294 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~-------------------~dg~v~iwd~~~~~~~~~~~~~---~~v~~v~~--spdg~~l~~  294 (427)
                      -+.+.|+|+++.++++.                   .+.+|.+||+.+++........   .....+.|  +|+|+++++
T Consensus       190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV  269 (462)
T 2ece_A          190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFI  269 (462)
T ss_dssp             CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEE
T ss_pred             cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEE
Confidence            34577899999888774                   3688999999886543333221   23344544  999999998


Q ss_pred             EEc-----CCceeeeeeeCCCCCCccccccccccccce---ee-------c-cCCceeEEEECCCCCEEEEEEecCCCcc
Q 014302          295 AFA-----GSLTLGSIHFASKPPSLDAHLLPVDLPDIV---SL-------T-GSQGIEKIAWDASGERLAVSYKGGDDIY  358 (427)
Q Consensus       295 ~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~-~~~~i~~v~~sp~g~~La~~~~~~~d~~  358 (427)
                      ++.     .++++..+...+  ..+.... .++++...   .+       . ....+..+.+||||++|.++..+.    
T Consensus       270 ~~e~~~~~Lss~V~v~~~d~--g~~~~~~-vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~----  342 (462)
T 2ece_A          270 NMVVSLKDLSSSIWLWFYED--GKWNAEK-VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI----  342 (462)
T ss_dssp             EEEEETTTCCEEEEEEEEET--TEEEEEE-EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT----
T ss_pred             EEeeeccCCCceEEEEEecC--CceeEEE-EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC----
Confidence            887     777777666543  1111111 01111110   00       0 024678999999999999976555    


Q ss_pred             eeEEEEEEeccC---ceEEEeeeeee-------eCCCCCCCceeEEeccCCCCCceeEEEe
Q 014302          359 KGLIAIYDARRT---PLISLSLIGFI-------RGPGDNPKPVAFSFHDKFKQGPLLSVCW  409 (427)
Q Consensus       359 ~g~i~vwd~~~~---~~~~~~~~~~~-------~~~~~~~~~~~~~f~~~~~~g~~l~v~~  409 (427)
                       +.|.+||+...   +++...+.|-.       .+......|..+++.|+   |..|-|+.
T Consensus       343 -d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD---Gk~LyVaN  399 (462)
T 2ece_A          343 -GEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD---GRRVYVTN  399 (462)
T ss_dssp             -TEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT---SSEEEEEC
T ss_pred             -CEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC---CCEEEEEc
Confidence             45999998632   33333333310       01111123667888775   66666665

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.88  E-value=2.7e-06  Score=75.96  Aligned_cols=220  Identities=9%  Similarity=-0.004  Sum_probs=129.1

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNA  178 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~  178 (427)
                      ..+.+++++++|.++++...++.|..|+.+..  ............+.++++.|++ .++++. ..+.+.+|+..  +..
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~--g~~  131 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKKGI--IKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITDD--GKI  131 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTT--CCE
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCCCc--EEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECCC--CCE
Confidence            35889999999998877766888988886522  1111112244578999999998 565555 45788888763  111


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------cCceE----EeccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------LGTPI----RRGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------~~~~~----~~~~~~v~~  241 (427)
                      ...                      . ... ....+..+++.++|++..             .+...    ......+..
T Consensus       132 ~~~----------------------~-~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~  187 (299)
T 2z2n_A          132 REY----------------------E-LPN-KGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVG  187 (299)
T ss_dssp             EEE----------------------E-CSS-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEE
T ss_pred             EEe----------------------c-CCC-CCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCccee
Confidence            000                      0 000 122344455555444311             01111    112345778


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      ++++++|+..++...++.|.+||. +++...+.  .....+.+++++++|+.++ +....+.+..++.. .  .+..   
T Consensus       188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v-~~~~~~~i~~~d~~-g--~~~~---  259 (299)
T 2z2n_A          188 ITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF-TEWGANKIGRLTSN-N--IIEE---  259 (299)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE-EETTTTEEEEEETT-T--EEEE---
T ss_pred             EEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE-eccCCceEEEECCC-C--ceEE---
Confidence            999999986666666889999998 55543322  3456788999999998554 44444567776652 1  1110   


Q ss_pred             ccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          320 PVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       320 ~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                       ...     ......+.++++ ++|+.+++.   ..    +.|..++.++.
T Consensus       260 -~~~-----~~~~~~~~~i~~-~~g~l~v~~---~~----~~l~~~~~~~~  296 (299)
T 2z2n_A          260 -YPI-----QIKSAEPHGICF-DGETIWFAM---EC----DKIGKLTLIKD  296 (299)
T ss_dssp             -EEC-----SSSSCCEEEEEE-CSSCEEEEE---TT----TEEEEEEEC--
T ss_pred             -EeC-----CCCCCccceEEe-cCCCEEEEe---cC----CcEEEEEcCcc
Confidence             000     012236889999 999877663   22    23777777654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.87  E-value=1.2e-06  Score=82.20  Aligned_cols=270  Identities=10%  Similarity=0.042  Sum_probs=139.7

Q ss_pred             CCCCEEEEEeCC-----CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec----------CCeEEEEecc
Q 014302          109 QHKHIVAFISGS-----TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAPS  173 (427)
Q Consensus       109 p~g~~lat~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~----------~~~i~iw~~~  173 (427)
                      |++.++.+....     +.|.+.|..+.  +......--..+  .++++||++.++++..          ++.|.++|..
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~--~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~  157 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTG--RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV  157 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTT--EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCC--EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC
Confidence            566666655442     69999998776  232222211223  7999999966665542          3678899886


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhccc------CCCceeeeEeCCCCCCcccC-----c---eEEeccCC-
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ------NGEQITALSWGPDGRFPGLG-----T---PIRRGFGG-  238 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~spdg~~l~~~-----~---~~~~~~~~-  238 (427)
                               ++                ..+..+...      .......+.++|||+++...     .   .+...... 
T Consensus       158 ---------t~----------------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv  212 (426)
T 3c75_H          158 ---------TF----------------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF  212 (426)
T ss_dssp             ---------TC----------------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             ---------CC----------------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence                     11                111111110      01223467777777753311     0   01000000 


Q ss_pred             eE------EEEEccCC-CEEEEEecCCcEEEEEcCCCCcc-----ccccCCCC-eeEEEECCCCCEEEEEEcCCceeeee
Q 014302          239 LS------ILKWSPTG-DYFFAAKFDGTFYLWETNTWTSE-----PWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGSI  305 (427)
Q Consensus       239 v~------~~~~sp~g-~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~-v~~v~~spdg~~l~~~~~~~~~i~~~  305 (427)
                      +.      +....|++ +.+++.+.||.+.+.+..+++..     .+...... ...+.|++++..+++... .+.++++
T Consensus       213 v~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~Vi  291 (426)
T 3c75_H          213 DRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQA  291 (426)
T ss_dssp             EEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEE
T ss_pred             EEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEE
Confidence            00      11233443 33345556677666666433322     11111111 124567888887776644 4577777


Q ss_pred             eeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC----cceeEEEEEEeccCceEEEeeeeee
Q 014302          306 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIGFI  381 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d----~~~g~i~vwd~~~~~~~~~~~~~~~  381 (427)
                      ++......+..............-........++++|++++|.++.....+    ...+.|.++|+.+.+.+...+.|- 
T Consensus       292 D~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-  370 (426)
T 3c75_H          292 DLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-  370 (426)
T ss_dssp             EECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-
T ss_pred             eccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-
Confidence            775432111000000000000000001123457899999988885432110    012579999999999876655543 


Q ss_pred             eCCCCCCCceeEEeccCCCCCc-eeEEEe-eCceEEEEec
Q 014302          382 RGPGDNPKPVAFSFHDKFKQGP-LLSVCW-SSGFCCTYPL  419 (427)
Q Consensus       382 ~~~~~~~~~~~~~f~~~~~~g~-~l~v~~-~~g~i~~~~~  419 (427)
                             .+..++|.|+   |. +|-+.+ .++.|.+|+.
T Consensus       371 -------~P~gia~spD---g~~~lyv~n~~s~~VsVID~  400 (426)
T 3c75_H          371 -------EIDSINVSQD---AEPLLYALSAGTQTLHIYDA  400 (426)
T ss_dssp             -------EECEEEECCS---SSCEEEEEETTTTEEEEEET
T ss_pred             -------CcCeEEEccC---CCEEEEEEcCCCCeEEEEEC
Confidence                   2668999886   55 555555 6999999985

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.86  E-value=3.3e-06  Score=75.42  Aligned_cols=232  Identities=11%  Similarity=0.032  Sum_probs=137.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      .+.+++++++|+++++...++.|.+||.. +. ............+.++++.+++ .++++.. .+.|..++.+  +   
T Consensus        63 ~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~-~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~--g---  134 (300)
T 2qc5_A           63 KVMCLIVSSLGDIWFTENGANKIGKLSKK-GG-FTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD--G---  134 (300)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT--S---
T ss_pred             cceeEEECCCCCEEEEecCCCeEEEECCC-CC-eEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC--C---
Confidence            57899999999977776667889888876 31 1212222234578999999998 5555554 5778777754  0   


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                                         ...... +              +            .....+..++++++|+..++...++.
T Consensus       135 -------------------~~~~~~-~--------------~------------~~~~~~~~i~~d~~g~l~v~~~~~~~  168 (300)
T 2qc5_A          135 -------------------TIYEYD-L--------------P------------NKGSYPAFITLGSDNALWFTENQNNS  168 (300)
T ss_dssp             -------------------CEEEEE-C--------------S------------STTCCEEEEEECTTSSEEEEETTTTE
T ss_pred             -------------------CEEEcc-C--------------C------------CCCCCceeEEECCCCCEEEEecCCCe
Confidence                               000000 0              0            01235678889999985556655788


Q ss_pred             EEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302          260 FYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK  337 (427)
Q Consensus       260 v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  337 (427)
                      |..||. .++...+.  .....+..+++.++|+..+ +....+.+..++....   +.....         ......+.+
T Consensus       169 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~i~~~~~~g~---~~~~~~---------~~~~~~~~~  234 (300)
T 2qc5_A          169 IGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWF-VEIMGNKIGRITTTGE---ISEYDI---------PTPNARPHA  234 (300)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEE-EETTTTEEEEECTTCC---EEEEEC---------SSTTCCEEE
T ss_pred             EEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEE-EccCCCEEEEEcCCCc---EEEEEC---------CCCCCCceE
Confidence            999987 44433222  3345688999999997665 4444446666655211   110000         012236789


Q ss_pred             EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302          338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~  417 (427)
                      ++++++|+..++   ...+   +.|..|+. ++......      .+.....+.++++.++   |.++...+ + .|..|
T Consensus       235 i~~d~~g~l~v~---~~~~---~~i~~~~~-~g~~~~~~------~~~~~~~~~~i~~~~~---g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          235 ITAGKNSEIWFT---EWGA---NQIGRITN-DNTIQEYQ------LQTENAEPHGITFGKD---GSVWFALK-C-KIGKL  296 (300)
T ss_dssp             EEECSTTCEEEE---ETTT---TEEEEECT-TSCEEEEE------CCSTTCCCCCEEECTT---SCEEEECS-S-EEEEE
T ss_pred             EEECCCCCEEEe---ccCC---CeEEEECC-CCcEEEEE------CCccCCccceeEeCCC---CCEEEEcc-C-ceEEe
Confidence            999999986655   3222   45999998 44433221      1112233667777764   55554444 4 66665


Q ss_pred             e
Q 014302          418 P  418 (427)
Q Consensus       418 ~  418 (427)
                      +
T Consensus       297 ~  297 (300)
T 2qc5_A          297 N  297 (300)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.86  E-value=1.1e-06  Score=79.13  Aligned_cols=198  Identities=11%  Similarity=0.125  Sum_probs=115.4

Q ss_pred             CeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCC
Q 014302          145 DVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDG  223 (427)
Q Consensus       145 ~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  223 (427)
                      -..+..|+|++..++.+... +.|..|+..         ++              ....                     
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~---------~~--------------~~~~---------------------   49 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSF---------TK--------------QVQR---------------------   49 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETT---------TC--------------CEEE---------------------
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECC---------CC--------------cEEE---------------------
Confidence            45688999977677777654 888899876         11              0000                     


Q ss_pred             CCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccccc-----CCCCeeEEEECCCCCEEEEEEcC
Q 014302          224 RFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-----TSGFVTGATWDPEGRMILLAFAG  298 (427)
Q Consensus       224 ~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~v~~v~~spdg~~l~~~~~~  298 (427)
                              + .....+.+++++++|+++++ . ++.|.+||..+++...+..     ....+..++++|+|++++.....
T Consensus        50 --------~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~  118 (297)
T 3g4e_A           50 --------V-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAE  118 (297)
T ss_dssp             --------E-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEEC
T ss_pred             --------E-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCc
Confidence                    0 01235778999999995544 3 6789999988776543321     22457889999999976644322


Q ss_pred             C--------ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe--c
Q 014302          299 S--------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--R  368 (427)
Q Consensus       299 ~--------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~--~  368 (427)
                      .        ..-.++.+... ...    .       .........+.++|+||++.|.++  +...   +.|.+|++  .
T Consensus       119 ~~~~~~~~~~~~~l~~~d~~-g~~----~-------~~~~~~~~pngi~~spdg~~lyv~--~~~~---~~i~~~~~d~~  181 (297)
T 3g4e_A          119 ETAPAVLERHQGALYSLFPD-HHV----K-------KYFDQVDISNGLDWSLDHKIFYYI--DSLS---YSVDAFDYDLQ  181 (297)
T ss_dssp             CSBTTBCCTTCEEEEEECTT-SCE----E-------EEEEEESBEEEEEECTTSCEEEEE--EGGG---TEEEEEEECTT
T ss_pred             ccccccccCCCcEEEEEECC-CCE----E-------EEeeccccccceEEcCCCCEEEEe--cCCC---CcEEEEeccCC
Confidence            1        11123333221 000    0       001111246889999999988775  3333   56999997  4


Q ss_pred             cCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          369 RTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++.+....  -+.........+-.+++.++   |.+....+..++|..|+.
T Consensus       182 ~G~~~~~~--~~~~~~~~~~~p~g~~~d~~---G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          182 TGQISNRR--SVYKLEKEEQIPDGMCIDAE---GKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             TCCEEEEE--EEEECCGGGCEEEEEEEBTT---SCEEEEEETTTEEEEECT
T ss_pred             CCcccCcE--EEEECCCCCCCCCeeEECCC---CCEEEEEcCCCEEEEEcC
Confidence            55432111  11111111123556777654   677777777888888763

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.85  E-value=1.1e-07  Score=89.28  Aligned_cols=228  Identities=14%  Similarity=0.036  Sum_probs=131.2

Q ss_pred             eeEEcCCCCEEEEEe----------CCCeEEEEEccCCCCcceeecc--C---CcCCeeEEEEccCCCceEEEec--CCe
Q 014302          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTS--D---SQRDVKVLEWRPNGGRSLSVGC--KGG  166 (427)
Q Consensus       104 ~l~~sp~g~~lat~~----------~d~~v~vwd~~~~~~~~~~~~~--~---~~~~v~~l~~sp~~~~~la~g~--~~~  166 (427)
                      .++++|||++|.++.          .++.|.++|..+..........  .   .......++|+|||++++++..  .+.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999887775          3678999988776221111111  0   1123467899999966665543  377


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCC------CceeeeEeCCCCCCcc----cCceE----
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNG------EQITALSWGPDGRFPG----LGTPI----  232 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~spdg~~l~----~~~~~----  232 (427)
                      |.+.|+.         ++                +.+..+.....      ..-.-+++++||+++.    .+...    
T Consensus       202 VsVID~~---------t~----------------kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~  256 (426)
T 3c75_H          202 VGVVDLE---------GK----------------TFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT  256 (426)
T ss_dssp             EEEEETT---------TT----------------EEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC
T ss_pred             EEEEECC---------CC----------------eEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee
Confidence            8899987         11                11111111000      0011244556665421    11111    


Q ss_pred             ---EeccCCe-EEEEEccCCCEEEEEecCCcEEEEEcCCCCcc---ccc-------c---CCCCeeEEEECCCCCEEEEE
Q 014302          233 ---RRGFGGL-SILKWSPTGDYFFAAKFDGTFYLWETNTWTSE---PWS-------S---TSGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       233 ---~~~~~~v-~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~---~~~-------~---~~~~v~~v~~spdg~~l~~~  295 (427)
                         .....++ ..+.++++++.++..+..+.|.+.|+......   .+.       .   .......++++|++++++++
T Consensus       257 ~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa  336 (426)
T 3c75_H          257 EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLL  336 (426)
T ss_dssp             CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred             eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEE
Confidence               0001111 13467999998887777899999998654421   110       0   01122347899999988876


Q ss_pred             EcC---------CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEE
Q 014302          296 FAG---------SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIY  365 (427)
Q Consensus       296 ~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vw  365 (427)
                      ..+         .+.+.+++....+.             ...+..+.....++|+|||+ +|+++...+     +.|.|+
T Consensus       337 ~~~~~~gthk~~s~~VsVID~~T~kv-------------v~~I~vg~~P~gia~spDg~~~lyv~n~~s-----~~VsVI  398 (426)
T 3c75_H          337 VDQRDEWKHKAASRFVVVLNAETGER-------------INKIELGHEIDSINVSQDAEPLLYALSAGT-----QTLHIY  398 (426)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCE-------------EEEEEEEEEECEEEECCSSSCEEEEEETTT-----TEEEEE
T ss_pred             ecccccccccCCCCEEEEEECCCCeE-------------EEEEECCCCcCeEEEccCCCEEEEEEcCCC-----CeEEEE
Confidence            532         23566666655321             11222233578999999999 787753223     569999


Q ss_pred             EeccCceEE
Q 014302          366 DARRTPLIS  374 (427)
Q Consensus       366 d~~~~~~~~  374 (427)
                      |+.+++.+.
T Consensus       399 D~~t~kvv~  407 (426)
T 3c75_H          399 DAATGEELR  407 (426)
T ss_dssp             ETTTCCEEE
T ss_pred             ECCCCCEEE
Confidence            999998763

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.77  E-value=3.4e-06  Score=76.90  Aligned_cols=155  Identities=12%  Similarity=0.093  Sum_probs=88.9

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccccc-----CCCCeeEEEECCCCCEEEEEEcC-----Cceeeeeee
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS-----TSGFVTGATWDPEGRMILLAFAG-----SLTLGSIHF  307 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~-----~~~~v~~v~~spdg~~l~~~~~~-----~~~i~~~~~  307 (427)
                      .+.+++|+|+|+++++.  +..|.+||..+++...+..     ....+..++++|+|+.++.....     .+.++.++ 
T Consensus        91 ~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-  167 (326)
T 2ghs_A           91 MGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-  167 (326)
T ss_dssp             CEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-
T ss_pred             cceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-
Confidence            57788999999877654  3459999988776543321     12357899999999976644321     23455554 


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec--cC-ceEEEeeeeeeeCC
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR--RT-PLISLSLIGFIRGP  384 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~--~~-~~~~~~~~~~~~~~  384 (427)
                       +.  .+    ..+       .......+.++|+|||+.|.++  +..+   +.|.+|++.  ++ .+...  .-+....
T Consensus       168 -~g--~~----~~~-------~~~~~~~~~i~~s~dg~~lyv~--~~~~---~~I~~~d~~~~~Gl~~~~~--~~~~~~~  226 (326)
T 2ghs_A          168 -KG--KV----TKL-------FADISIPNSICFSPDGTTGYFV--DTKV---NRLMRVPLDARTGLPTGKA--EVFIDST  226 (326)
T ss_dssp             -TT--EE----EEE-------EEEESSEEEEEECTTSCEEEEE--ETTT---CEEEEEEBCTTTCCBSSCC--EEEEECT
T ss_pred             -CC--cE----EEe-------eCCCcccCCeEEcCCCCEEEEE--ECCC---CEEEEEEcccccCCcccCc--eEEEECC
Confidence             21  11    000       0111246789999999988775  3333   569999985  44 32100  0011111


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .....+..+++.++   |.++...+.++.|..|+.
T Consensus       227 ~~~~~p~gi~~d~~---G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          227 GIKGGMDGSVCDAE---GHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             TSSSEEEEEEECTT---SCEEEEEETTTEEEEECT
T ss_pred             CCCCCCCeeEECCC---CCEEEEEeCCCEEEEECC
Confidence            11122345556543   666666666677777763

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.76  E-value=6.9e-07  Score=90.38  Aligned_cols=204  Identities=9%  Similarity=0.087  Sum_probs=124.1

Q ss_pred             eeeeEEcCCCCEEEEEeCCC-------------eEEEEEccCCCCcceeeccC---CcCCeeEEEEccCCCceEEEecC-
Q 014302          102 LQGVSWHQHKHIVAFISGST-------------QVIVRDYEDSGKDACILTSD---SQRDVKVLEWRPNGGRSLSVGCK-  164 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~-------------~v~vwd~~~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~la~g~~-  164 (427)
                      ...++|+ ||+.|+.++.+.             .|++|++.+.......+...   |...+.++.|+|||+.++++... 
T Consensus       177 ~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          177 FSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS  255 (693)
T ss_dssp             SCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred             eccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence            3688999 999999988774             38889887763333333332   33457889999999666554432 


Q ss_pred             ---CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEE
Q 014302          165 ---GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSI  241 (427)
Q Consensus       165 ---~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~  241 (427)
                         +.+.+|+++.+.                     ..+.                             .+..+......
T Consensus       256 ~~~~~i~~~d~~~~~---------------------~~~~-----------------------------~l~~~~~~~~~  285 (693)
T 3iuj_A          256 TSGNRLYVKDLSQEN---------------------APLL-----------------------------TVQGDLDADVS  285 (693)
T ss_dssp             SSCCEEEEEETTSTT---------------------CCCE-----------------------------EEECSSSSCEE
T ss_pred             CCCcEEEEEECCCCC---------------------CceE-----------------------------EEeCCCCceEE
Confidence               367777775100                     0000                             11112223333


Q ss_pred             EEEccCCCEEE-EEecC---CcEEEEEcCCCCc---cccccCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCC
Q 014302          242 LKWSPTGDYFF-AAKFD---GTFYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPP  312 (427)
Q Consensus       242 ~~~sp~g~~l~-~~~~d---g~v~iwd~~~~~~---~~~~~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~  312 (427)
                      . |+++|..|+ .+..+   +.|.++|+.+...   ..+..+...+.  .|++++++|++....++  .|+++++.... 
T Consensus       286 ~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-  361 (693)
T 3iuj_A          286 L-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-  361 (693)
T ss_dssp             E-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-
T ss_pred             E-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-
Confidence            3 677787776 44433   5799999988765   33345555554  89999999988776664  34554443220 


Q ss_pred             CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          313 SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                           ...+.      +...+.+..+.++++++.|+..+.+-  ..+++|+.||+.+++..
T Consensus       362 -----~~~l~------~p~~~~~~~~~~~~d~~~l~~~~ss~--~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          362 -----VREVA------LPGLGSVSGFNGKHDDPALYFGFENY--AQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             -----EEEEC------CSSSSEEEECCCCTTCSCEEEEEECS--SSCCEEEEECTTTCCEE
T ss_pred             -----eEEee------cCCCceEEeeecCCCCCEEEEEecCC--CCCCEEEEEECCCCeEE
Confidence                 01011      11223567778889999888765432  23477999999877654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.73  E-value=1.5e-06  Score=77.21  Aligned_cols=195  Identities=11%  Similarity=0.073  Sum_probs=112.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~  179 (427)
                      .+++++++|+|++|+  +.++.|..||. ++ .............+.++.+.|+|..+++.+. .+.+..++.+  +.  
T Consensus        38 ~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G-~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk--  109 (276)
T 3no2_A           38 ECNSVAATKAGEILF--SYSKGAKMITR-DG-RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GE--  109 (276)
T ss_dssp             CCCEEEECTTSCEEE--ECBSEEEEECT-TS-CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SC--
T ss_pred             CCcCeEECCCCCEEE--eCCCCEEEECC-CC-CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CC--
Confidence            467889999999888  45788988887 33 1222332223346889999999944444344 3444444432  11  


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                                         .   +.           .+.....         ...+......+++.++|++|++...++.
T Consensus       110 -------------------~---l~-----------~~~~~~~---------~~~~~~~~~~v~~~~~G~~lv~~~~~~~  147 (276)
T 3no2_A          110 -------------------V---LS-----------KTEFETG---------IERPHAQFRQINKNKKGNYLVPLFATSE  147 (276)
T ss_dssp             -------------------E---EE-----------EEEECCS---------CSSGGGSCSCCEECTTSCEEEEETTTTE
T ss_pred             -------------------E---EE-----------EEeccCC---------CCcccccccCceECCCCCEEEEecCCCE
Confidence                               0   00           0111000         0001112334567899999999999999


Q ss_pred             EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEE
Q 014302          260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA  339 (427)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  339 (427)
                      |..||.. ++..-.........++...++|+.++++.. ++.+..++..+.....+-...  +++..    .-..+..++
T Consensus       148 v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~-~~~v~~~d~~tG~~~w~~~~~--~~~~~----~l~~~~~~~  219 (276)
T 3no2_A          148 VREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD-AHCFVQLNLESNRIVRRVNAN--DIEGV----QLFFVAQLF  219 (276)
T ss_dssp             EEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT-TSEEEEECTTTCCEEEEEEGG--GSBSC----CCSEEEEEE
T ss_pred             EEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC-CCeEEEEeCcCCcEEEEecCC--CCCCc----cccccccce
Confidence            9999987 654322233345667888999998876544 435655554432211110000  00000    012478889


Q ss_pred             ECCCCCEEEEEEec
Q 014302          340 WDASGERLAVSYKG  353 (427)
Q Consensus       340 ~sp~g~~La~~~~~  353 (427)
                      ..++|..+++.+.+
T Consensus       220 ~~~~G~i~v~~~~g  233 (276)
T 3no2_A          220 PLQNGGLYICNWQG  233 (276)
T ss_dssp             ECTTSCEEEEEECT
T ss_pred             EcCCCCEEEEeccC
Confidence            99999999886644

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.67  E-value=5.2e-06  Score=74.82  Aligned_cols=157  Identities=17%  Similarity=0.128  Sum_probs=90.8

Q ss_pred             CCeEEEEEccC-CCEEEEEecCCcEEEEEcCCCCcccc-c-----cCCCCeeEEEECCCCCEEEEEEcCC----------
Q 014302          237 GGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSEPW-S-----STSGFVTGATWDPEGRMILLAFAGS----------  299 (427)
Q Consensus       237 ~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~~~-~-----~~~~~v~~v~~spdg~~l~~~~~~~----------  299 (427)
                      ..+..++++++ |+.++ ++..+.|.+||.. ++...+ .     .....+.+++++++|+.+++.....          
T Consensus        71 ~~~~~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             CCEEEEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             CCCceEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccc
Confidence            45778999999 65444 4445579999987 554333 2     1123578999999998776543321          


Q ss_pred             ----ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEEC----CCCCEEEEEEecCCCcceeEEEEEEec-cC
Q 014302          300 ----LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD----ASGERLAVSYKGGDDIYKGLIAIYDAR-RT  370 (427)
Q Consensus       300 ----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s----p~g~~La~~~~~~~d~~~g~i~vwd~~-~~  370 (427)
                          +.++.++.. .  .+.           ...........++|+    |+|+.|.++  +..+   +.|.+|++. .+
T Consensus       149 ~~~~~~l~~~~~~-g--~~~-----------~~~~~~~~~~~i~~~~~~d~dg~~l~v~--~~~~---~~i~~~~~~~~g  209 (314)
T 1pjx_A          149 QEKFGSIYCFTTD-G--QMI-----------QVDTAFQFPNGIAVRHMNDGRPYQLIVA--ETPT---KKLWSYDIKGPA  209 (314)
T ss_dssp             SSSCEEEEEECTT-S--CEE-----------EEEEEESSEEEEEEEECTTSCEEEEEEE--ETTT---TEEEEEEEEETT
T ss_pred             cCCCCeEEEECCC-C--CEE-----------EeccCCCCcceEEEecccCCCCCEEEEE--ECCC---CeEEEEECCCCC
Confidence                234443322 1  110           001111246789999    999877664  3333   459999986 34


Q ss_pred             ceEEEeeeeeeeCCCCC-CCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          371 PLISLSLIGFIRGPGDN-PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       371 ~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .......  +..-.... ..+..+++.++   |.++...+.++.|..|+.
T Consensus       210 ~~~~~~~--~~~~~~~~~~~p~~i~~d~~---G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          210 KIENKKV--WGHIPGTHEGGADGMDFDED---NNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEE--EEECCCCSSCEEEEEEEBTT---CCEEEEEETTTEEEEECT
T ss_pred             ccccceE--EEECCCCCCCCCCceEECCC---CCEEEEEcCCCEEEEEcC
Confidence            3221111  11111111 23567777764   677777777888888864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.63  E-value=3.5e-06  Score=79.39  Aligned_cols=209  Identities=13%  Similarity=0.043  Sum_probs=114.2

Q ss_pred             eEEcCCCCEEEEEeCCC--eEEEEEccCCCCcceee--c-cCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          105 VSWHQHKHIVAFISGST--QVIVRDYEDSGKDACIL--T-SDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       105 l~~sp~g~~lat~~~d~--~v~vwd~~~~~~~~~~~--~-~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      ++|+|+++.|+++..++  .|.+|+...... ....  . ......+.+++++|++..++++..++.|..|+.+      
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~------  248 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK------  248 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT------
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCce-eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC------
Confidence            89999999988887765  777777665421 1111  1 2144567899999954366665455778888876      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCC
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDG  258 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg  258 (427)
                         .+              .........             ..+.         ....+...++|+|++..|+ +....+
T Consensus       249 ---~~--------------~~~~~~~~~-------------~~g~---------~~~~P~~~ia~~p~~g~lyv~d~~~~  289 (409)
T 3hrp_A          249 ---TQ--------------EVTLIKQLE-------------LSGS---------LGTNPGPYLIYYFVDSNFYMSDQNLS  289 (409)
T ss_dssp             ---TC--------------CEEEEEECC-------------CCSC---------CCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred             ---CC--------------CEEEEeccc-------------ccCC---------CCCCccccEEEeCCCCEEEEEeCCCC
Confidence               11              101110000             0000         0000112789999655555 556678


Q ss_pred             cEEEEEcCCCCccccccC---------------CCCeeEEEECCCCCEEEEEEc-CCceeeeeeeCCCCC-Ccccccccc
Q 014302          259 TFYLWETNTWTSEPWSST---------------SGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASKPP-SLDAHLLPV  321 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~---------------~~~v~~v~~spdg~~l~~~~~-~~~~i~~~~~~~~~~-~~~~~~~~~  321 (427)
                      .|+.|+.... ...+.++               -.....++++|+|+. +++.. ....|+.+++.+... .+.++....
T Consensus       290 ~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~l-yvad~~~~~~I~~~~~~~G~v~~~~g~~~~~  367 (409)
T 3hrp_A          290 SVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNF-YIVDGFKGYCLRKLDILDGYVSTVAGQVDVA  367 (409)
T ss_dssp             EEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCE-EEEETTTTCEEEEEETTTTEEEEEEECTTCB
T ss_pred             EEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCE-EEEeCCCCCEEEEEECCCCEEEEEeCCCCCC
Confidence            8999986543 2111111               245789999999994 44555 566787777544311 111110000


Q ss_pred             ccccce-eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          322 DLPDIV-SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       322 ~~~~~~-~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      -..... ....-.....++++++|.++++   +...   +.|+.+++
T Consensus       368 g~~~g~~~~~~~~~P~giavd~~g~lyVa---d~~n---~~Ir~i~~  408 (409)
T 3hrp_A          368 SQIDGTPLEATFNYPYDICYDGEGGYWIA---EAWG---KAIRKYAV  408 (409)
T ss_dssp             SCCCBSTTTCCBSSEEEEEECSSSEEEEE---ESTT---CEEEEEEE
T ss_pred             CcCCCChhceEeCCceEEEEcCCCCEEEE---ECCC---CeEEEEEe
Confidence            000000 0000125789999999766655   4444   45777765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.62  E-value=1.6e-06  Score=80.09  Aligned_cols=226  Identities=10%  Similarity=-0.057  Sum_probs=122.0

Q ss_pred             eeEEcCCCCEEEEEe----------CCCeEEEEEccCCCCcceeeccCC-------cCCeeEEEEccCCCceEEEec--C
Q 014302          104 GVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSDS-------QRDVKVLEWRPNGGRSLSVGC--K  164 (427)
Q Consensus       104 ~l~~sp~g~~lat~~----------~d~~v~vwd~~~~~~~~~~~~~~~-------~~~v~~l~~sp~~~~~la~g~--~  164 (427)
                      .+.++|||++|.++.          .+++|.+||..+.  +......-.       ......++++|||+.++++..  .
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~--~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~  146 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS  146 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC--CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCC
Confidence            689999999888875          3689999999887  222221111       123567999999965555542  3


Q ss_pred             CeEEE--EeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc----c-----Cc---
Q 014302          165 GGICI--WAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG----L-----GT---  230 (427)
Q Consensus       165 ~~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~----~-----~~---  230 (427)
                      +.+.+  +|...   ...+..+           +.     ......+ . . .-+++++||+++.    .     +.   
T Consensus       147 ~~v~V~~iD~~t---v~~i~v~-----------~~-----~~~~p~g-~-~-~~~~~~~dg~~~~vd~~~~~~~~~~v~~  204 (368)
T 1mda_H          147 AAAGLSVPGASD---DQLTKSA-----------SC-----FHIHPGA-A-A-THYLGSCPASLAASDLAAAPAAAGIVGA  204 (368)
T ss_dssp             CEEEEEETTTEE---EEEEECS-----------SC-----CCCEEEE-T-T-EEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred             CeEEEEEEchhh---ceEEECC-----------Cc-----eEEccCC-C-e-EEEEEcCCCCEEEEECccccccCCeEEE
Confidence            56888  88751   0000000           00     0000000 0 0 0123333433311    0     00   


Q ss_pred             ----eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc---cccc-------cC---CCCeeEEEECCCCCEEE
Q 014302          231 ----PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS---EPWS-------ST---SGFVTGATWDPEGRMIL  293 (427)
Q Consensus       231 ----~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~---~~~~-------~~---~~~v~~v~~spdg~~l~  293 (427)
                          .+.....+.   . ++++..++..+. +.|.+.|+.+...   ..+.       .+   ......++++||+++++
T Consensus       205 ~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~ly  279 (368)
T 1mda_H          205 QCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIM  279 (368)
T ss_dssp             CSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEE
T ss_pred             EeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEE
Confidence                011111222   3 666776665555 8999999865432   1111       01   11122278999999988


Q ss_pred             EEEc---C-----CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEe-cCCCcceeEEEE
Q 014302          294 LAFA---G-----SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYK-GGDDIYKGLIAI  364 (427)
Q Consensus       294 ~~~~---~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~-~~~d~~~g~i~v  364 (427)
                      ++..   .     .....++++...+.             ...+..+.....|+|+|||++|+++.. ++     ++|.+
T Consensus       280 V~~~~~~~~~~~~~~~~~ViD~~t~~v-------------v~~i~vg~~p~gi~~s~Dg~~l~va~~~~~-----~~VsV  341 (368)
T 1mda_H          280 ILTVEHSRSCLAAAENTSSVTASVGQT-------------SGPISNGHDSDAIIAAQDGASDNYANSAGT-----EVLDI  341 (368)
T ss_dssp             EEEEECSSCTTSCEEEEEEEESSSCCE-------------EECCEEEEEECEEEECCSSSCEEEEEETTT-----TEEEE
T ss_pred             EEeccccCcccccCCCEEEEECCCCeE-------------EEEEECCCCcceEEECCCCCEEEEEccCCC-----CeEEE
Confidence            7654   2     22334666554311             111222236789999999997666544 23     45999


Q ss_pred             EEeccCceEEEe
Q 014302          365 YDARRTPLISLS  376 (427)
Q Consensus       365 wd~~~~~~~~~~  376 (427)
                      +|+.+++.+...
T Consensus       342 ID~~t~kvv~~I  353 (368)
T 1mda_H          342 YDAASDQDQSSV  353 (368)
T ss_dssp             EESSSCEEEEEC
T ss_pred             EECCCCcEEEEE
Confidence            999998877443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.61  E-value=1.5e-05  Score=74.02  Aligned_cols=203  Identities=11%  Similarity=0.046  Sum_probs=112.2

Q ss_pred             eeeeEEcCCCCEEEEEeC--CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEE-ecCCeEEEEeccCCCCc
Q 014302          102 LQGVSWHQHKHIVAFISG--STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNA  178 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~-g~~~~i~iw~~~~~~~~  178 (427)
                      -..++|+|||++|+++..  +++|.++| .+.  +..........   ++.+.|++.+.+++ ..++.+.+++..  ++.
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~--~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~~--g~~  198 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGG--SSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDHA--GGA  198 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCC--CEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEECC--CcE
Confidence            457899999999998864  57899998 665  23222012111   24566776554444 345777777762  110


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCC-eEEEEEccCCCEEEEEecC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGG-LSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~-v~~~~~sp~g~~l~~~~~d  257 (427)
                                              ......   ..                 .+ ....+ .....+.+++..++..+..
T Consensus       199 ------------------------~~~~~~---~~-----------------~~-~~~~p~~~~~~~~~~~~~~~~~~~~  233 (373)
T 2mad_H          199 ------------------------AGAGLV---GA-----------------ML-TAAQNLLTQPAQANKSGRIVWPVYS  233 (373)
T ss_pred             ------------------------EEEEec---cc-----------------cc-cCCcceeecceeEecCCEEEEEcCC
Confidence                                    000000   00                 00 00011 1224466666655544467


Q ss_pred             CcEEEEEcCCCCcc---cccc----------CCCCeeEEEECCCCCEEEEEEcC---------CceeeeeeeCCCCCCcc
Q 014302          258 GTFYLWETNTWTSE---PWSS----------TSGFVTGATWDPEGRMILLAFAG---------SLTLGSIHFASKPPSLD  315 (427)
Q Consensus       258 g~v~iwd~~~~~~~---~~~~----------~~~~v~~v~~spdg~~l~~~~~~---------~~~i~~~~~~~~~~~~~  315 (427)
                      +.+.+.|+......   .+..          .......+.++||++.++++..+         .+.+.+++....+.   
T Consensus       234 ~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v---  310 (373)
T 2mad_H          234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT---  310 (373)
T ss_pred             ceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE---
Confidence            88888888654321   1110          11223347788888888776532         23566666544310   


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCC-EEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGE-RLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~-~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                                ...+..+.....++|+|||+ +|+++..+  +   +.|.+||+.+++.+..
T Consensus       311 ----------v~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--~---~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          311 ----------SSQISLGHDVDAISVAQDGGPDLYALSAG--T---EVLHIYDAGAGDQDQS  356 (373)
T ss_pred             ----------EEEEECCCCcCeEEECCCCCeEEEEEcCC--C---CeEEEEECCCCCEEee
Confidence                      12223334679999999999 56663212  2   5699999999887633

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.59  E-value=3.6e-05  Score=69.88  Aligned_cols=247  Identities=14%  Similarity=0.064  Sum_probs=136.4

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeecc-------------------CCcCCeeEEEEcc-CCCceEEE
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS-------------------DSQRDVKVLEWRP-NGGRSLSV  161 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~-------------------~~~~~v~~l~~sp-~~~~~la~  161 (427)
                      ..+++|+++|+++.++..++.|..|+....  .......                   .....+..+++.+ ++ .++++
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~   97 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNS--GFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIV   97 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTT--CEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCC--ceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEE
Confidence            467889999997888888899988876654  1211110                   0113578899998 66 66666


Q ss_pred             ecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEE
Q 014302          162 GCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSI  241 (427)
Q Consensus       162 g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~  241 (427)
                      ...+.+..++.+         .+              ....+.   ..           ..+          ........
T Consensus        98 d~~~~i~~~d~~---------~g--------------~~~~~~---~~-----------~~~----------~~~~~p~~  130 (322)
T 2fp8_A           98 DCYYHLSVVGSE---------GG--------------HATQLA---TS-----------VDG----------VPFKWLYA  130 (322)
T ss_dssp             ETTTEEEEECTT---------CE--------------ECEEEE---SE-----------ETT----------EECSCEEE
T ss_pred             ECCCCEEEEeCC---------CC--------------EEEEec---cc-----------CCC----------Ccccccce
Confidence            555667777654         11              101000   00           000          00123456


Q ss_pred             EEEcc-CCCEEEEEec-----------------CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302          242 LKWSP-TGDYFFAAKF-----------------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  303 (427)
Q Consensus       242 ~~~sp-~g~~l~~~~~-----------------dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~  303 (427)
                      +++.+ +|+..++...                 ++.|..||..+++...+.........++|+|+|+.|+++......|+
T Consensus       131 i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~  210 (322)
T 2fp8_A          131 VTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIV  210 (322)
T ss_dssp             EEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEE
T ss_pred             EEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEE
Confidence            77888 7765554321                 36688888766554333222234567999999998877766656777


Q ss_pred             eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC----cceeEEEEEEeccCceEEEeeee
Q 014302          304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARRTPLISLSLIG  379 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d----~~~g~i~vwd~~~~~~~~~~~~~  379 (427)
                      .+++.....   +....     ...  ..+ ...++++++|++.++.......    ...+.|..+|.. +..+..    
T Consensus       211 ~~~~~~~~~---~~~~~-----~~~--~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~----  274 (322)
T 2fp8_A          211 KYWLEGPKK---GTAEV-----LVK--IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEV----  274 (322)
T ss_dssp             EEESSSTTT---TCEEE-----EEE--CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEE----
T ss_pred             EEECCCCcC---Cccce-----EEe--CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEE----
Confidence            777654211   00000     001  112 6789999999977664331000    001557788764 444322    


Q ss_pred             eeeCCC-C-CCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          380 FIRGPG-D-NPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       380 ~~~~~~-~-~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                       +..+. . ...+..+++.    .+.|.......++|..|++
T Consensus       275 -~~~~~g~~~~~~~~~~~~----~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          275 -IPLPPPFAGEHFEQIQEH----DGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             -EECCTTTTTSCCCEEEEE----TTEEEEECSSCSEEEEEEC
T ss_pred             -EECCCCCccccceEEEEe----CCEEEEeecCCCceEEEec
Confidence             12221 1 1223455552    3566666667888988874

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.55  E-value=2.8e-05  Score=72.52  Aligned_cols=195  Identities=14%  Similarity=0.102  Sum_probs=109.3

Q ss_pred             eeeEEcCCCCEEEEEeCC------CeEEEEEccCCCCcceeecc-C-C-cCCeeEEEEccCCCceEEEec----------
Q 014302          103 QGVSWHQHKHIVAFISGS------TQVIVRDYEDSGKDACILTS-D-S-QRDVKVLEWRPNGGRSLSVGC----------  163 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d------~~v~vwd~~~~~~~~~~~~~-~-~-~~~v~~l~~sp~~~~~la~g~----------  163 (427)
                      ..+..+|+| +++++..+      +.|.+.|..+.  +...... + . ..--..+.|+|+++ .+.++.          
T Consensus       141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~--~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g  216 (462)
T 2ece_A          141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF--EPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDG  216 (462)
T ss_dssp             EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC--CEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTC
T ss_pred             cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC--eEEEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccc
Confidence            456778999 66665444      78989887765  3332222 1 1 12234688999995 555553          


Q ss_pred             ----------CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEE
Q 014302          164 ----------KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIR  233 (427)
Q Consensus       164 ----------~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~  233 (427)
                                .+.|.+||++         ++                +..+.+.-.           .            
T Consensus       217 ~~~~~~~~~~~d~V~v~D~~---------~~----------------k~~~tI~vg-----------~------------  248 (462)
T 2ece_A          217 LKLEHLKDRYGNRIHFWDLR---------KR----------------KRIHSLTLG-----------E------------  248 (462)
T ss_dssp             CCTTTHHHHSCCEEEEEETT---------TT----------------EEEEEEESC-----------T------------
T ss_pred             cchhhhhhccCCEEEEEECC---------CC----------------cEeeEEecC-----------C------------
Confidence                      4789999987         11                112211110           0            


Q ss_pred             eccCCeEEEEE--ccCCCEEEEEe------cCCcEEEEEcCCCCc-------------cccc--------cCCCCeeEEE
Q 014302          234 RGFGGLSILKW--SPTGDYFFAAK------FDGTFYLWETNTWTS-------------EPWS--------STSGFVTGAT  284 (427)
Q Consensus       234 ~~~~~v~~~~~--sp~g~~l~~~~------~dg~v~iwd~~~~~~-------------~~~~--------~~~~~v~~v~  284 (427)
                       .......+.|  +|+++++++++      .+++|.+|....++.             ....        ........+.
T Consensus       249 -~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          249 -ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             -TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             -CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence             0012223434  88888887555      455776655433211             0000        0124578899


Q ss_pred             ECCCCCEEEEEEcCCceeeeeeeCCC-CCCccccccccc--cccc---eeeccCCceeEEEECCCCCEEEEEE
Q 014302          285 WDPEGRMILLAFAGSLTLGSIHFASK-PPSLDAHLLPVD--LPDI---VSLTGSQGIEKIAWDASGERLAVSY  351 (427)
Q Consensus       285 ~spdg~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~--~~~~---~~~~~~~~i~~v~~sp~g~~La~~~  351 (427)
                      +|+||++|+++....+.|.++++.+. ...+.+... +-  +...   ......+....++++|||++|.++.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~-tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVK-LGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEE-eCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            99999999999888889999888643 122111110 00  0000   0000112468999999999999963

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.54  E-value=3.1e-06  Score=77.77  Aligned_cols=212  Identities=11%  Similarity=0.067  Sum_probs=114.7

Q ss_pred             ceeeeEEcCCCCEEEEEeC-----CCeEEEEEccCCCCcceeecc-----CCcCCeeEEEEccCCCceEEEec----CCe
Q 014302          101 DLQGVSWHQHKHIVAFISG-----STQVIVRDYEDSGKDACILTS-----DSQRDVKVLEWRPNGGRSLSVGC----KGG  166 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~-----d~~v~vwd~~~~~~~~~~~~~-----~~~~~v~~l~~sp~~~~~la~g~----~~~  166 (427)
                      .+..++++++|+++++-..     +..|.+||+.++.. ......     .+...+..++++|++..++++..    ++.
T Consensus        68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA  146 (343)
T ss_dssp             CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred             EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence            7899999999986665543     57899999876621 111111     12345689999987546555543    478


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc---cCceEEeccCCeEEEE
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG---LGTPIRRGFGGLSILK  243 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~---~~~~~~~~~~~v~~~~  243 (427)
                      |.+|+..         ++                .....+..+.........+.++|..+.   ....+......+..++
T Consensus       147 i~v~d~~---------~g----------------~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia  201 (343)
T 2qe8_A          147 LIRVDLQ---------TG----------------LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV  201 (343)
T ss_dssp             EEEEETT---------TC----------------CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE
T ss_pred             EEEEECC---------CC----------------CEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE
Confidence            9999986         11                111111111000000011122222111   0000111123567899


Q ss_pred             EccCCCEEEEEecCC-cEEEEEcCC---CCc------c--ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC
Q 014302          244 WSPTGDYFFAAKFDG-TFYLWETNT---WTS------E--PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP  311 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg-~v~iwd~~~---~~~------~--~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~  311 (427)
                      |+|+|+.|+.+..++ .+..++...   ...      .  ...++......++++++|..+++ ....+.|..|+..+. 
T Consensus       202 ~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va-~~~~~~V~~~d~~~G-  279 (343)
T 2qe8_A          202 LDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG-DLAHSAIGVITSADR-  279 (343)
T ss_dssp             ECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE-EGGGTEEEEEETTTT-
T ss_pred             eccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE-ccCCCeEEEEECCCC-
Confidence            999999999776655 555555421   110      0  11123445678999999976654 455557777776222 


Q ss_pred             CCccccccccccccceeeccCCceeEEEECCCCCEEEEE
Q 014302          312 PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                       .+    ..     .........+.+++|+++|++++++
T Consensus       280 -~~----~~-----~~~~~~~~~p~~va~~~~g~l~v~~  308 (343)
T 2qe8_A          280 -AY----KL-----LVTDEKLSWTDSFNFGSDGYLYFDC  308 (343)
T ss_dssp             -EE----EE-----EEECGGGSCEEEEEECTTSCEEEEE
T ss_pred             -CE----EE-----EEECCceecCCeeEECCCCcEEEEe
Confidence             11    00     0000112367899999999877663

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.51  E-value=0.00013  Score=64.07  Aligned_cols=228  Identities=11%  Similarity=0.033  Sum_probs=130.2

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCcc---eeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcc
Q 014302          111 KHIVAFISGSTQVIVRDYEDSGKDA---CILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAA  186 (427)
Q Consensus       111 g~~lat~~~d~~v~vwd~~~~~~~~---~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~  186 (427)
                      |++|..+.. +.|+.++++......   ..........+..++|+|++..++.+... +.|..++.+         .+  
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~---------g~--   68 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH---------GG--   68 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESS---------SC--
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecC---------CC--
Confidence            455666653 478888887652111   11111123457899999977566655543 778888775         00  


Q ss_pred             cccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEc
Q 014302          187 SFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWET  265 (427)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~  265 (427)
                                  ....+                            +.........+++++++..|+ +....+.|.++++
T Consensus        69 ------------~~~~~----------------------------~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~  108 (267)
T 1npe_A           69 ------------EPTTI----------------------------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (267)
T ss_dssp             ------------CCEEE----------------------------ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ------------CcEEE----------------------------EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEc
Confidence                        00000                            000113466889999877777 4455678999998


Q ss_pred             CCCCccccc-cCCCCeeEEEECCCCCEEEEEEcC--CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECC
Q 014302          266 NTWTSEPWS-STSGFVTGATWDPEGRMILLAFAG--SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA  342 (427)
Q Consensus       266 ~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp  342 (427)
                      .......+. ........++++|++..|+.+...  .+.|..+.+.......   ..         ...-.....++++|
T Consensus       109 ~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~---~~---------~~~~~~P~gia~d~  176 (267)
T 1npe_A          109 DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI---LA---------QDNLGLPNGLTFDA  176 (267)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE---EE---------CTTCSCEEEEEEET
T ss_pred             CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE---EE---------ECCCCCCcEEEEcC
Confidence            654332222 222467899999987777666544  3466666554321100   00         00112578999999


Q ss_pred             CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          343 SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       343 ~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++.+|.++-.+  .   +.|.++++.......+     +.+   ...|..++..    .+.++.+.+.+++|..++.
T Consensus       177 ~~~~lyv~d~~--~---~~I~~~~~~g~~~~~~-----~~~---~~~P~gi~~d----~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          177 FSSQLCWVDAG--T---HRAECLNPAQPGRRKV-----LEG---LQYPFAVTSY----GKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             TTTEEEEEETT--T---TEEEEEETTEEEEEEE-----EEC---CCSEEEEEEE----TTEEEEEETTTTEEEEEET
T ss_pred             CCCEEEEEECC--C---CEEEEEecCCCceEEE-----ecC---CCCceEEEEe----CCEEEEEECCCCeEEEEeC
Confidence            98888776333  2   4699999876443222     111   1224556543    3566777777788877764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.48  E-value=1e-05  Score=72.87  Aligned_cols=177  Identities=12%  Similarity=0.175  Sum_probs=101.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeecc---C-CcCCeeEEEEccCCCceEEE----ecC--------
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS---D-SQRDVKVLEWRPNGGRSLSV----GCK--------  164 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~---~-~~~~v~~l~~sp~~~~~la~----g~~--------  164 (427)
                      .+..++++++|+++++...++.|.+|+.+ +  ....+..   + ....+.++++.|+| .++++    |..        
T Consensus        87 ~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g--~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~  162 (305)
T 3dr2_A           87 FTNGNAVDAQQRLVHCEHGRRAITRSDAD-G--QAHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPA  162 (305)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-S--CEEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCC
T ss_pred             ccceeeECCCCCEEEEECCCCEEEEECCC-C--CEEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCcccccccccc
Confidence            57899999999977766666889898875 3  1222211   1 12346789999998 56654    211        


Q ss_pred             ----CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC-CCCCcccCceEEeccCCe
Q 014302          165 ----GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP-DGRFPGLGTPIRRGFGGL  239 (427)
Q Consensus       165 ----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~v  239 (427)
                          +.-.||.++                                               + .|+..    .+. .....
T Consensus       163 ~~~~~~~~v~~~d-----------------------------------------------~~~g~~~----~~~-~~~~p  190 (305)
T 3dr2_A          163 DPELAHHSVYRLP-----------------------------------------------PDGSPLQ----RMA-DLDHP  190 (305)
T ss_dssp             CCSSSCEEEEEEC-----------------------------------------------SSSCCCE----EEE-EESSE
T ss_pred             ccccCCCeEEEEc-----------------------------------------------CCCCcEE----EEe-cCCCC
Confidence                012233222                                               1 11110    011 12345


Q ss_pred             EEEEEccCCCEEEEEecC------CcEEEEEcCCCCc---cccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          240 SILKWSPTGDYFFAAKFD------GTFYLWETNTWTS---EPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       240 ~~~~~sp~g~~l~~~~~d------g~v~iwd~~~~~~---~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      ..++|+||++.|+.+...      +.|++||+.....   ..+. ........+++.++|+..+ +. .+ .+.+++...
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~-~~-gv~~~~~~g  267 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SS-GT-GVCVFDSDG  267 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CC-SS-EEEEECTTS
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ec-CC-cEEEECCCC
Confidence            678999999988866554      6899999875431   1111 1234456789999999544 33 33 344444322


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEE
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                      +   .           ...+.....+.+++|+|+++.|.++
T Consensus       268 ~---~-----------~~~~~~~~~~~~~~f~~d~~~L~it  294 (305)
T 3dr2_A          268 Q---L-----------LGHIPTPGTASNCTFDQAQQRLFIT  294 (305)
T ss_dssp             C---E-----------EEEEECSSCCCEEEECTTSCEEEEE
T ss_pred             C---E-----------EEEEECCCceeEEEEeCCCCEEEEE
Confidence            1   1           1111112257899999999988875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.42  E-value=5.2e-06  Score=76.58  Aligned_cols=245  Identities=8%  Similarity=-0.072  Sum_probs=128.0

Q ss_pred             eEEEEEccCCCCcceeec-cCCcCCeeEEEEccCCCceEEEec----------CCeEEEEeccCCCCccccccCcccccc
Q 014302          122 QVIVRDYEDSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGC----------KGGICIWAPSYPGNAASVRSGAASFLG  190 (427)
Q Consensus       122 ~v~vwd~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~la~g~----------~~~i~iw~~~~~~~~~~~~~~~~~~~~  190 (427)
                      +|.+.|..+.  +..... .+. .+  .+.++||++.++++..          ++.|.+||..         ++      
T Consensus        47 ~vsvID~~t~--~v~~~i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~---------T~------  106 (368)
T 1mda_H           47 ENWVSCAGCG--VTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV---------TF------  106 (368)
T ss_dssp             EEEEEETTTT--EEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT---------TC------
T ss_pred             eEEEEECCCC--eEEEEEeCCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC---------CC------
Confidence            7888887776  333222 233 34  7999999966655541          3779999987         11      


Q ss_pred             cccCCCCcceeEeehhccc-C-----CCceeeeEeCCCCCCcccC-----ceEEe--ccC-CeEEEE------EccCCCE
Q 014302          191 ALSRGPGTRWTLVDFLRSQ-N-----GEQITALSWGPDGRFPGLG-----TPIRR--GFG-GLSILK------WSPTGDY  250 (427)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~-~-----~~~v~~~~~spdg~~l~~~-----~~~~~--~~~-~v~~~~------~sp~g~~  250 (427)
                                ..+..+..+ .     ......++++|||+++...     ..+..  -.. .+..+.      +.|+++.
T Consensus       107 ----------~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~  176 (368)
T 1mda_H          107 ----------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAA  176 (368)
T ss_dssp             ----------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETT
T ss_pred             ----------CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCe
Confidence                      222222211 0     1234577888888775421     11111  000 011221      2455543


Q ss_pred             EE-EEecCCcEEEEEcCC-----CCccc-----cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccc
Q 014302          251 FF-AAKFDGTFYLWETNT-----WTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLL  319 (427)
Q Consensus       251 l~-~~~~dg~v~iwd~~~-----~~~~~-----~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  319 (427)
                      .+ +.+.|+.+.+.|+.+     ++...     +.....+.   . ++++..+++.+.  +.+..+++......+..   
T Consensus       177 ~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~---  247 (368)
T 1mda_H          177 THYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKA---  247 (368)
T ss_dssp             EEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS--SCCEEEECCSSCCEEEC---
T ss_pred             EEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC--CEEEEEECCCCcceEEE---
Confidence            33 555677777777765     22210     11112222   2 555666555544  46777776542111100   


Q ss_pred             ccccccceeec---cCCceeEEEECCCCCEEEEEEe-c-CC----CcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCc
Q 014302          320 PVDLPDIVSLT---GSQGIEKIAWDASGERLAVSYK-G-GD----DIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKP  390 (427)
Q Consensus       320 ~~~~~~~~~~~---~~~~i~~v~~sp~g~~La~~~~-~-~~----d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  390 (427)
                      .+.+.......   .......++++||+++|.++.. . ..    +   ..+.++|+.+++.+...+.|.        .+
T Consensus       248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~---~~~~ViD~~t~~vv~~i~vg~--------~p  316 (368)
T 1mda_H          248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA---ENTSSVTASVGQTSGPISNGH--------DS  316 (368)
T ss_dssp             CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE---EEEEEEESSSCCEEECCEEEE--------EE
T ss_pred             EEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccC---CCEEEEECCCCeEEEEEECCC--------Cc
Confidence            01110000000   0012233789999999988543 1 10    1   225699999998876555443        26


Q ss_pred             eeEEeccCCCCCc-eeEEEe-eCceEEEEec
Q 014302          391 VAFSFHDKFKQGP-LLSVCW-SSGFCCTYPL  419 (427)
Q Consensus       391 ~~~~f~~~~~~g~-~l~v~~-~~g~i~~~~~  419 (427)
                      ..++|.|+   |. ++.+.+ .++.|.++++
T Consensus       317 ~gi~~s~D---g~~l~va~~~~~~~VsVID~  344 (368)
T 1mda_H          317 DAIIAAQD---GASDNYANSAGTEVLDIYDA  344 (368)
T ss_dssp             CEEEECCS---SSCEEEEEETTTTEEEEEES
T ss_pred             ceEEECCC---CCEEEEEccCCCCeEEEEEC
Confidence            68999886   54 555555 5899999985

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.41  E-value=0.00049  Score=60.34  Aligned_cols=219  Identities=10%  Similarity=0.052  Sum_probs=128.3

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .+..++|++++..|..+ ..++.|.+++.+..  ...............+++.|++..++.+... +.|.+++.+     
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~--~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-----  109 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGG--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-----  109 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSC--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-----
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCC--CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC-----
Confidence            46789999977655544 45689999888755  2222222222467899999976566555443 778777765     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec--
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF--  256 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~--  256 (427)
                                        +.....+               .             .........++++|++..|+.+..  
T Consensus       110 ------------------g~~~~~~---------------~-------------~~~~~~P~~i~vd~~~g~lyv~~~~~  143 (267)
T 1npe_A          110 ------------------GTQRRVL---------------F-------------DTGLVNPRGIVTDPVRGNLYWTDWNR  143 (267)
T ss_dssp             ------------------SCSCEEE---------------E-------------CSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred             ------------------CCCEEEE---------------E-------------ECCCCCccEEEEeeCCCEEEEEECCC
Confidence                              0000000               0             000124567889997777765543  


Q ss_pred             -CCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          257 -DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       257 -dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                       .+.|..+++.......+. ........+++++++..|+++......|..++......      .       ........
T Consensus       144 ~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~------~-------~~~~~~~~  210 (267)
T 1npe_A          144 DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR------R-------KVLEGLQY  210 (267)
T ss_dssp             SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE------E-------EEEECCCS
T ss_pred             CCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce------E-------EEecCCCC
Confidence             367888887643332222 23346789999999998888877777787777653210      0       00111123


Q ss_pred             eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccC
Q 014302          335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDK  398 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  398 (427)
                      ...++.+  +.+|.++..++     +.|.++|..+++.+...+.+      ....|..+++.|.
T Consensus       211 P~gi~~d--~~~lyva~~~~-----~~v~~~d~~~g~~~~~i~~g------~~~~p~gi~~~~~  261 (267)
T 1npe_A          211 PFAVTSY--GKNLYYTDWKT-----NSVIAMDLAISKEMDTFHPH------KQTRLYGITIALS  261 (267)
T ss_dssp             EEEEEEE--TTEEEEEETTT-----TEEEEEETTTTEEEEEECCS------SCCCCCCEEEECS
T ss_pred             ceEEEEe--CCEEEEEECCC-----CeEEEEeCCCCCceEEEccc------cccccceeeecCc
Confidence            4566654  56666643232     45999999887765333221      1123567777765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.33  E-value=4.8e-05  Score=66.43  Aligned_cols=200  Identities=11%  Similarity=0.070  Sum_probs=113.1

Q ss_pred             eeeeEEcCCCCEEEEEeC--CCeEEEEEccCCCCcceeec-cCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCC
Q 014302          102 LQGVSWHQHKHIVAFISG--STQVIVRDYEDSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGN  177 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~--d~~v~vwd~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~  177 (427)
                      ...++|+|++.+.++.+.  ++.|++.|+.++  +..... .+.......+++.  ++.+..+.. ++.+.++|..    
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg--~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~----   94 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTG--KVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRR----   94 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTC--CEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETT----
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCC--CEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECC----
Confidence            478999998754444432  589999999887  222221 1111122344554  435555554 4888899986    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                           +.                ..+..+           ...               ...  ...+++||+.|+++..+
T Consensus        95 -----t~----------------~v~~~i-----------~~g---------------~~~--g~glt~Dg~~l~vs~gs  125 (266)
T 2iwa_A           95 -----TL----------------SNIKNF-----------THQ---------------MKD--GWGLATDGKILYGSDGT  125 (266)
T ss_dssp             -----TT----------------EEEEEE-----------ECC---------------SSS--CCEEEECSSSEEEECSS
T ss_pred             -----CC----------------cEEEEE-----------ECC---------------CCC--eEEEEECCCEEEEECCC
Confidence                 11                111111           110               001  12355688888877678


Q ss_pred             CcEEEEEcCCCCccccc---cCC---CCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc-----
Q 014302          258 GTFYLWETNTWTSEPWS---STS---GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI-----  326 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~~---~~~---~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----  326 (427)
                      +.|.++|..+.+.....   ...   .....+.|. +| .++........+.+++..+....  +.   +++...     
T Consensus       126 ~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~--~~---I~~~g~~~~~~  198 (266)
T 2iwa_A          126 SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLL--GW---ILLPNLRKKLI  198 (266)
T ss_dssp             SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEE--EE---EECHHHHHHHH
T ss_pred             CeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEE--EE---EECCCcccccc
Confidence            89999999887764332   111   235677887 66 45555555668888887764210  00   000000     


Q ss_pred             -eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          327 -VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       327 -~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                       .........+.++|+|+++.|.++  +...   .+|++.++...
T Consensus       199 ~~~~~~~~v~nGIa~~~~~~~lfVT--gk~~---~~v~~i~l~~~  238 (266)
T 2iwa_A          199 DEGFRDIDVLNGIAWDQENKRIFVT--GKLW---PKLFEIKLHLV  238 (266)
T ss_dssp             HTTCTTCCCEEEEEEETTTTEEEEE--ETTC---SEEEEEEEEEC
T ss_pred             cccccccCceEEEEEcCCCCEEEEE--CCCC---CeEEEEEEecc
Confidence             000011256899999999998886  3333   45888777543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.33  E-value=5.9e-05  Score=76.87  Aligned_cols=60  Identities=18%  Similarity=0.177  Sum_probs=39.6

Q ss_pred             ceeeeEEc-CCCCEEEEEeC-C----CeEEEEEccCC-CCcceeeccCCcCCeeEEEEccCCCceEEEecC
Q 014302          101 DLQGVSWH-QHKHIVAFISG-S----TQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK  164 (427)
Q Consensus       101 ~V~~l~~s-p~g~~lat~~~-d----~~v~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~  164 (427)
                      .+...+|| |||++||.+.. +    .+|+++|+.++ .....    .......+++|+|||+.++.+..+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~----~~~~~~~~~~WspDg~~l~y~~~d  241 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD----KVSGTNGEIVWGPDHTSLFYVTKD  241 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC----CEEEECSCCEECSSTTEEEEEEEC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc----cccCceeeEEEecCCCEEEEEEEC
Confidence            46788999 99999987643 2    25888888765 31111    111224578999999777766654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.32  E-value=2.2e-05  Score=75.81  Aligned_cols=221  Identities=10%  Similarity=0.059  Sum_probs=124.8

Q ss_pred             CCCCEEEEEeC-CCeEEEEEccCCCCccee-eccCCcCCeeEEEE-c-cCCCceEEEec------------------CCe
Q 014302          109 QHKHIVAFISG-STQVIVRDYEDSGKDACI-LTSDSQRDVKVLEW-R-PNGGRSLSVGC------------------KGG  166 (427)
Q Consensus       109 p~g~~lat~~~-d~~v~vwd~~~~~~~~~~-~~~~~~~~v~~l~~-s-p~~~~~la~g~------------------~~~  166 (427)
                      +||++|.+... +..|.+-|+...  +... +.-........+++ + |++.++++.+.                  ++.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~--~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVM--KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTT--EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCc--eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            48887776654 567999888877  2222 12223345778888 4 89966655531                  134


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-------EEec-c--
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-------IRRG-F--  236 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-------~~~~-~--  236 (427)
                      +.+.|.+                         .......+.-.  .....++.+|||+++.....       +... .  
T Consensus       177 vtvID~~-------------------------t~~v~~qI~Vg--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~  229 (595)
T 1fwx_A          177 FTAVDAD-------------------------KWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE  229 (595)
T ss_dssp             EEEEETT-------------------------TTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS
T ss_pred             EEEEECC-------------------------CCeEEEEEEeC--CCccceEECCCCCEEEEEecCcccCcchhhccccc
Confidence            5566654                         11222222211  12356677788776431110       0000 0  


Q ss_pred             -CCeEEEE------EccCCCEEEEEecCCcEEEEEcCC--CCc-cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          237 -GGLSILK------WSPTGDYFFAAKFDGTFYLWETNT--WTS-EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       237 -~~v~~~~------~sp~g~~l~~~~~dg~v~iwd~~~--~~~-~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                       ..+..+.      +.++|+++..    +.|.+.|.++  ++. ...........++.++|||++++++......+.+++
T Consensus       230 ~d~v~V~~~~~~~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid  305 (595)
T 1fwx_A          230 MDHIVVFNIAEIEKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLD  305 (595)
T ss_dssp             EEEEEEEEHHHHHHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred             cceEEEeeccceeEeccCCCeeEE----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence             0111111      3457766554    5599999987  433 223334456678999999999999888888888888


Q ss_pred             eCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      +......+++...+. ..-......+.....++|+|+| ++.++..-+     +.|.+||+..
T Consensus       306 ~~~~~~~~~~~l~~~-~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ld-----sqV~kwdi~~  361 (595)
T 1fwx_A          306 VTRFDAVFYENADPR-SAVVAEPELGLGPLHTAFDGRG-NAYTSLFLD-----SQVVKWNIED  361 (595)
T ss_dssp             GGGHHHHHHSCCCGG-GGEEECCBCCSCEEEEEECTTS-EEEEEETTT-----TEEEEEEHHH
T ss_pred             CcccccccccccCcc-cceEEEcCCCCCcceEEECCCC-eEEEEEecC-----CcEEEEEhhH
Confidence            875311111111100 0001123344578999999999 666643333     4599999977

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.20  E-value=3e-05  Score=74.88  Aligned_cols=155  Identities=13%  Similarity=0.093  Sum_probs=91.2

Q ss_pred             CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCce--------------eeeeeeCC-------CCCCcc
Q 014302          257 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--------------LGSIHFAS-------KPPSLD  315 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~--------------i~~~~~~~-------~~~~~~  315 (427)
                      ++.+.+.|..+.+......-.+....++.+|||+++++++.+...              +.+++...       .....-
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             CceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            457899999887664333222356778899999999988766522              22222111       000011


Q ss_pred             cccccccccc------ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE---EEeeeeee-eCCC
Q 014302          316 AHLLPVDLPD------IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI---SLSLIGFI-RGPG  385 (427)
Q Consensus       316 ~~~~~~~~~~------~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~---~~~~~~~~-~~~~  385 (427)
                      +....++...      ...+..+.....+.++|||++++++..++     .+|.++|+.+.+..   .+.+...+ .-..
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s-----~~VsVid~~~~~~~~~~~l~~~~~v~~~v~  328 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS-----PTVTVLDVTRFDAVFYENADPRSAVVAEPE  328 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTS-----SBEEEEEGGGHHHHHHSCCCGGGGEEECCB
T ss_pred             CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCC-----CeEEEEECcccccccccccCcccceEEEcC
Confidence            1222223332      12333445678899999999999974333     35999999865310   01111111 1112


Q ss_pred             CCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          386 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       386 ~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ....|..++|.|+   |.+..+.+-+++|..|++
T Consensus       329 vG~gP~h~aF~~d---G~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          329 LGLGPLHTAFDGR---GNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             CCSCEEEEEECTT---SEEEEEETTTTEEEEEEH
T ss_pred             CCCCcceEEECCC---CeEEEEEecCCcEEEEEh
Confidence            2234889999996   567778888999988873

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.19  E-value=0.0016  Score=58.45  Aligned_cols=228  Identities=13%  Similarity=0.085  Sum_probs=119.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCe--EEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGG--ICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~--i~iw~~~~~~~  177 (427)
                      ....++|+++|+++++-..++.|..||.+..  .....  ........+++.++|. ++++. ..+.  +..++..    
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~--~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~----  103 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHA--TVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKS----  103 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEE--ECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECT----
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEE--eCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCC----
Confidence            3578999999987777667889888876543  22221  2234688999999994 55444 2333  4344433    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecC
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFD  257 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  257 (427)
                           .+              ....+.              -.+.+             .....++..+++..+++...+
T Consensus       104 -----~g--------------~~~~~~--------------~~~~~-------------~~~~g~~~~~~~~~~v~d~~~  137 (306)
T 2p4o_A          104 -----DG--------------TVETLL--------------TLPDA-------------IFLNGITPLSDTQYLTADSYR  137 (306)
T ss_dssp             -----TS--------------CEEEEE--------------ECTTC-------------SCEEEEEESSSSEEEEEETTT
T ss_pred             -----CC--------------eEEEEE--------------eCCCc-------------cccCcccccCCCcEEEEECCC
Confidence                 11              111000              00110             011122333444333344457


Q ss_pred             CcEEEEEcCCCCccc-----------cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc
Q 014302          258 GTFYLWETNTWTSEP-----------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI  326 (427)
Q Consensus       258 g~v~iwd~~~~~~~~-----------~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      +.|+.+|...++...           ....-.....+  +|++++|+++......|+.+++... ..+..         .
T Consensus       138 g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~-g~~~~---------~  205 (306)
T 2p4o_A          138 GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDST-DKPGE---------P  205 (306)
T ss_dssp             TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTT-SCBCC---------C
T ss_pred             CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCC-CCCCc---------c
Confidence            788888876432110           00111234445  8899988888777778888887642 11100         0


Q ss_pred             eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec---cCCCCCc
Q 014302          327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH---DKFKQGP  403 (427)
Q Consensus       327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~---~~~~~g~  403 (427)
                      ..+........++++++|+++++   ....   +.|.+++.. +....+.   .+..  ....+.+++|.   |+   +.
T Consensus       206 ~~~~~~~~P~gi~vd~dG~l~va---~~~~---~~V~~~~~~-G~~~~~~---~~~~--~~~~p~~~a~~g~~~d---~~  270 (306)
T 2p4o_A          206 EIFVEQTNIDDFAFDVEGNLYGA---THIY---NSVVRIAPD-RSTTIIA---QAEQ--GVIGSTAVAFGQTEGD---CT  270 (306)
T ss_dssp             EEEEESCCCSSEEEBTTCCEEEE---CBTT---CCEEEECTT-CCEEEEE---CGGG--TCTTEEEEEECCSTTT---TT
T ss_pred             EEEeccCCCCCeEECCCCCEEEE---eCCC---CeEEEECCC-CCEEEEe---eccc--ccCCceEEEEecccCC---CC
Confidence            00111125678999999987655   2222   349999865 4442211   1111  12347789997   43   44


Q ss_pred             eeEEEee
Q 014302          404 LLSVCWS  410 (427)
Q Consensus       404 ~l~v~~~  410 (427)
                      .|-|...
T Consensus       271 ~LyVt~~  277 (306)
T 2p4o_A          271 AIYVVTN  277 (306)
T ss_dssp             EEEEEEC
T ss_pred             EEEEECC
Confidence            4555544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.14  E-value=0.0015  Score=61.68  Aligned_cols=257  Identities=11%  Similarity=0.122  Sum_probs=133.7

Q ss_pred             ceeeeEEcCC--CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCC---eEEEEeccCC
Q 014302          101 DLQGVSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKG---GICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp~--g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~---~i~iw~~~~~  175 (427)
                      ....|+|+|+  +..|..+...+.|+.++...+  ....+ .........++|+++|. ++++...+   ...++.+.  
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g--~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~--  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ--YVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT--  213 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT--EEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC--
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCC--EEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE--
Confidence            4578999995  444555543378888887655  23222 23344688999999995 55554322   11122221  


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCCEEEEE
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGDYFFAA  254 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~~l~~~  254 (427)
                                                                   +++.+.. ...+. .......++++| +|...++-
T Consensus       214 ---------------------------------------------~~~~~~~-~~~~~-~~~~P~giavd~~~G~lyv~d  246 (433)
T 4hw6_A          214 ---------------------------------------------RASGFTE-RLSLC-NARGAKTCAVHPQNGKIYYTR  246 (433)
T ss_dssp             ---------------------------------------------GGGTTCC-EEEEE-ECSSBCCCEECTTTCCEEECB
T ss_pred             ---------------------------------------------CCCCeec-ccccc-ccCCCCEEEEeCCCCeEEEEE
Confidence                                                         0000000 00111 122345677888 55544455


Q ss_pred             ecCCcEEEEEcCCCCc-cccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc------ccccccccccc
Q 014302          255 KFDGTFYLWETNTWTS-EPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL------DAHLLPVDLPD  325 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~-~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~  325 (427)
                      ..++.|+.+|..++.. ..+.  ........++|+|+|++|+++......|+.+++......+      .+.....-...
T Consensus       247 ~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~d  326 (433)
T 4hw6_A          247 YHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVD  326 (433)
T ss_dssp             TTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBC
T ss_pred             CCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCC
Confidence            5667888888875554 2221  1222334699999999888877777788887765321111      11100000000


Q ss_pred             ce-eeccCCceeEEEE---------CCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee------eeeeeC-C---C
Q 014302          326 IV-SLTGSQGIEKIAW---------DASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL------IGFIRG-P---G  385 (427)
Q Consensus       326 ~~-~~~~~~~i~~v~~---------sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~------~~~~~~-~---~  385 (427)
                      .. ....-.....+++         +++|.++++   +...   +.|+.++. .+.+..+.-      .|+..+ .   .
T Consensus       327 g~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva---D~~n---~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~  399 (433)
T 4hw6_A          327 GMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC---DRDS---HTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQA  399 (433)
T ss_dssp             EEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE---ETTT---TEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTC
T ss_pred             CcccceEEcCCccEEEEccccccccCCCCcEEEE---ECCC---CEEEEECC-CCCEEEEEeCCCCCccccCCCcccccc
Confidence            00 0000114678999         777766555   4433   45888874 444433321      122222 1   1


Q ss_pred             CCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          386 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       386 ~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .-..|..|++.|.  .|.|+.+-+.+.+|..+++
T Consensus       400 ~~~~P~giavd~~--~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          400 LFNHPTSIAYDMK--RKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             BCSSEEEEEEETT--TTEEEEEEGGGTEEEEEEE
T ss_pred             EeCCCcEEEEECC--CCEEEEEeCCCCEEEEEec
Confidence            1234667888743  3666666666777777653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.00096  Score=63.05  Aligned_cols=156  Identities=11%  Similarity=0.183  Sum_probs=92.9

Q ss_pred             ceeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-C---eEEEEeccCC
Q 014302          101 DLQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-G---GICIWAPSYP  175 (427)
Q Consensus       101 ~V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~---~i~iw~~~~~  175 (427)
                      ....|+|+| ++..|.++...+.|+.+|++..  ....+. ........++|+++++.++++... +   ...+|...  
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~--~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~--  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE--YVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR--  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT--EEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG--
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC--EEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC--
Confidence            457899998 4555655555478888887665  222222 234567899999999545555432 1   11222221  


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEcc-CCCEEEEE
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSP-TGDYFFAA  254 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp-~g~~l~~~  254 (427)
                                                                    +|.+... ..+. .......++++| +|..+++-
T Consensus       213 ----------------------------------------------~g~~~~~-~~l~-~~~~p~giavdp~~g~lyv~d  244 (430)
T 3tc9_A          213 ----------------------------------------------ESGFKVI-TELT-KGQNCNGAETHPINGELYFNS  244 (430)
T ss_dssp             ----------------------------------------------GGTSCSE-EEEE-ECSSCCCEEECTTTCCEEEEE
T ss_pred             ----------------------------------------------CCceeee-eeec-cCCCceEEEEeCCCCEEEEEE
Confidence                                                          0000000 0011 122455678899 56555565


Q ss_pred             ecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          255 KFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      ..++.|+.++........+.  ........++|+|+|++|+++......|+.++...
T Consensus       245 ~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          245 WNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence            56788999998765442222  22345678999999998887777777888877654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.06  E-value=0.0067  Score=55.46  Aligned_cols=233  Identities=10%  Similarity=0.034  Sum_probs=133.5

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccc
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAAS  180 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~  180 (427)
                      .+|.+..++ .+|+.+ ....|+..+++..  ....+... ......++|.+....++.+-.. +.|..++.+       
T Consensus        36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~--~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~-------  103 (349)
T 3v64_C           36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRS--EYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLN-------  103 (349)
T ss_dssp             SCEEESSSC-CEEEEE-CBSCEEEECTTSC--CEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETT-------
T ss_pred             CcccccccC-ceeEee-cccceEEEeCCCC--eeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecC-------
Confidence            345555563 345444 3445766665544  23333333 3457899999877566665543 667777665       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCc
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGT  259 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~  259 (427)
                        .+              ....+                            +.........+++.+.+..|+ +-...+.
T Consensus       104 --g~--------------~~~~~----------------------------~~~~~~~p~glavd~~~g~ly~~d~~~~~  139 (349)
T 3v64_C          104 --GS--------------NVEEV----------------------------VSTGLESPGGLAVDWVHDKLYWTDSGTSR  139 (349)
T ss_dssp             --SC--------------SCEEE----------------------------ECSSCSCCCEEEEETTTTEEEEEETTTTE
T ss_pred             --CC--------------CceEE----------------------------EeCCCCCccEEEEecCCCeEEEEcCCCCe
Confidence              00              00000                            000112345678887666666 5555678


Q ss_pred             EEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302          260 FYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK  337 (427)
Q Consensus       260 v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  337 (427)
                      |.+.++.......+. ........+++.|.+..|+.+.... ..|+.+++.......   .  +       ...-...+.
T Consensus       140 I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~--~-------~~~~~~PnG  207 (349)
T 3v64_C          140 IEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---I--A-------DTHLFWPNG  207 (349)
T ss_dssp             EEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---S--C-------CSSCSCEEE
T ss_pred             EEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE---E--E-------ECCCCCcce
Confidence            999988755433332 3345678999999888887776555 567776655431100   0  0       001125689


Q ss_pred             EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302          338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~  417 (427)
                      ++|+|++..|.++  +...   +.|..+++.......+     +...  ...|..+++.    .+.+..+-|..++|..+
T Consensus       208 la~d~~~~~lY~a--D~~~---~~I~~~~~dG~~~~~~-----~~~~--~~~P~giav~----~~~ly~td~~~~~V~~~  271 (349)
T 3v64_C          208 LTIDYAGRRMYWV--DAKH---HVIERANLDGSHRKAV-----ISQG--LPHPFAITVF----EDSLYWTDWHTKSINSA  271 (349)
T ss_dssp             EEEETTTTEEEEE--ETTT---TEEEEEETTSCSCEEE-----ECSS--CSSEEEEEEE----TTEEEEEETTTTEEEEE
T ss_pred             EEEeCCCCEEEEE--ECCC---CEEEEEeCCCCceEEE-----EeCC--CCCceEEEEE----CCEEEEecCCCCeEEEE
Confidence            9999988888775  4333   5699999865433222     1111  2235666662    25677777788888777


Q ss_pred             e
Q 014302          418 P  418 (427)
Q Consensus       418 ~  418 (427)
                      +
T Consensus       272 ~  272 (349)
T 3v64_C          272 N  272 (349)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.05  E-value=0.00033  Score=60.51  Aligned_cols=184  Identities=12%  Similarity=0.099  Sum_probs=101.9

Q ss_pred             eeeeEEcCCCCEEEEEeCCC--eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          102 LQGVSWHQHKHIVAFISGST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      ...+.|+ ++.+..+.+.+|  .|+++|+.++  +..... ............++++++..... ++.+.++|.+     
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg--kv~~~~-~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~-----  115 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESG--KTLQQI-ELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIR-----  115 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTC--CEEEEE-ECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT-----
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCC--cEEEEE-ecCCccceeEEEEeCCEEEEEEeeCCEEEEEECc-----
Confidence            4788898 676666666655  8999998887  222221 11223333333344545555543 4888899986     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                          +.                ..+..+.           ..               .   ....+++|++.|+.+..++
T Consensus       116 ----t~----------------~~~~ti~-----------~~---------------~---eG~glt~dg~~L~~SdGs~  146 (262)
T 3nol_A          116 ----NL----------------RQVRSFN-----------YD---------------G---EGWGLTHNDQYLIMSDGTP  146 (262)
T ss_dssp             ----TC----------------CEEEEEE-----------CS---------------S---CCCCEEECSSCEEECCSSS
T ss_pred             ----cC----------------cEEEEEE-----------CC---------------C---CceEEecCCCEEEEECCCC
Confidence                11                1121111           10               0   1122346788888666678


Q ss_pred             cEEEEEcCCCCccccc---cCC---CCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce-----
Q 014302          259 TFYLWETNTWTSEPWS---STS---GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV-----  327 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~---~~~---~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----  327 (427)
                      .|.++|..+.+.....   ...   ..+..+.|. +|+ |.........|.+++..+...  .+.   +++....     
T Consensus       147 ~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V--~~~---Id~~~L~~~~~~  219 (262)
T 3nol_A          147 VLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKV--TGI---IDLNGILAEAGP  219 (262)
T ss_dssp             EEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBE--EEE---EECTTGGGGSCS
T ss_pred             eEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcE--EEE---EECCcCcccccc
Confidence            8999999988764332   112   334457776 675 445555555777777655421  000   0110000     


Q ss_pred             eeccCCceeEEEECCCCCEEEEE
Q 014302          328 SLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       328 ~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                      ......-.+.+||+|+++.|.++
T Consensus       220 ~~~~~~vlNGIA~dp~~~~lfVT  242 (262)
T 3nol_A          220 LPSPIDVLNGIAWDKEHHRLFVT  242 (262)
T ss_dssp             CCSSCCCEEEEEEETTTTEEEEE
T ss_pred             ccCcCCceEEEEEcCCCCEEEEE
Confidence            01112356899999999998886

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.04  E-value=0.0029  Score=58.78  Aligned_cols=232  Identities=10%  Similarity=0.037  Sum_probs=131.9

Q ss_pred             eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcccc
Q 014302          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASV  181 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~  181 (427)
                      +|.+..+ ..+|+.+ ....|+..+++..  ....+... ......++|.+.+..++.+-.. +.|..++.+        
T Consensus        80 ~C~~~~~-~~~l~~~-~~~~I~~i~~~~~--~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~--------  146 (386)
T 3v65_B           80 SCKALGP-EPVLLFA-NRIDIRQVLPHRS--EYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLN--------  146 (386)
T ss_dssp             CEEECSS-CCEEEEE-CBSCEEEECTTSC--CCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETT--------
T ss_pred             eECCccc-cceeEee-cCccceeeccCCC--cEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecC--------
Confidence            3444445 3345444 3456777666654  23333333 3457899999876566665543 667777765        


Q ss_pred             ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcE
Q 014302          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTF  260 (427)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v  260 (427)
                                     +.....+  +.                          ........+++.+.+..|+ +-...+.|
T Consensus       147 ---------------g~~~~~~--~~--------------------------~~~~~p~glavd~~~g~lY~~d~~~~~I  183 (386)
T 3v65_B          147 ---------------GSNVEEV--VS--------------------------TGLESPGGLAVDWVHDKLYWTDSGTSRI  183 (386)
T ss_dssp             ---------------SCCEEEE--EC--------------------------SSCSCCCCEEEETTTTEEEEEETTTTEE
T ss_pred             ---------------CCCcEEE--Ee--------------------------CCCCCccEEEEEeCCCeEEEEcCCCCeE
Confidence                           0000000  00                          0011234577777666666 55556778


Q ss_pred             EEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          261 YLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       261 ~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      .+.++.......+. ........+++.|.+..|+.+.... ..|+.+.+.......   ..         ...-...+.|
T Consensus       184 ~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~---------~~~~~~PnGl  251 (386)
T 3v65_B          184 EVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IA---------DTHLFWPNGL  251 (386)
T ss_dssp             EECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EE---------CSSCSCEEEE
T ss_pred             EEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE---EE---------ECCCCCeeeE
Confidence            88887654433332 3335678999999888887766555 567666654431100   00         0011256899


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      +|+|++..|.++  +...   +.|..+++.......+.     ...  ...|..+++.    .+.+..+.|..++|..++
T Consensus       252 avd~~~~~lY~a--D~~~---~~I~~~d~dG~~~~~~~-----~~~--~~~P~giav~----~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          252 TIDYAGRRMYWV--DAKH---HVIERANLDGSHRKAVI-----SQG--LPHPFAITVF----EDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             EEEGGGTEEEEE--ETTT---TEEEEECTTSCSCEEEE-----CSS--CSSEEEEEEE----TTEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCEEEEE--ECCC---CEEEEEeCCCCeeEEEE-----ECC--CCCceEEEEE----CCEEEEeeCCCCeEEEEE
Confidence            999988888775  4433   56999988654332221     111  2236667762    256777788888888776

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.01  E-value=0.0073  Score=54.36  Aligned_cols=230  Identities=12%  Similarity=0.030  Sum_probs=130.6

Q ss_pred             EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCccccccc
Q 014302          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGA  191 (427)
Q Consensus       113 ~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~  191 (427)
                      +|+.+. ...|+..+++..  ....+.. .......++|.+.+..++.+... +.|..++++         ..       
T Consensus         3 ~ll~~~-~~~I~~i~~~~~--~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~---------g~-------   62 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRS--EYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLD---------RA-------   62 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSC--CCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------
T ss_pred             EEEEEC-CCeEEEEECCCc--ceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECC---------CC-------
Confidence            455543 456888887765  2222222 23467899999877566666544 777777765         00       


Q ss_pred             ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCc
Q 014302          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTS  270 (427)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~  270 (427)
                             .       .   ......              .+.........+++++.+..|+ +-...+.|.++|+.....
T Consensus        63 -------~-------~---~~~~~~--------------~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~  111 (316)
T 1ijq_A           63 -------H-------G---VSSYDT--------------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR  111 (316)
T ss_dssp             ----------------------CEE--------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred             -------C-------C---CcccEE--------------EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce
Confidence                   0       0   000000              0000112345788887666666 555678899999875443


Q ss_pred             cccc-cCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEE
Q 014302          271 EPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA  348 (427)
Q Consensus       271 ~~~~-~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La  348 (427)
                      ..+. ........+++.|.+..|+.+.... +.|..+++.......   ..         ...-...+.++|+|++..|.
T Consensus       112 ~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~---~~---------~~~~~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          112 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LV---------TENIQWPNGITLDLLSGRLY  179 (316)
T ss_dssp             EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EE---------CSSCSCEEEEEEETTTTEEE
T ss_pred             EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE---EE---------ECCCCCceEEEEeccCCEEE
Confidence            3333 2345678999999877777665443 466666554321000   00         00112578999999988887


Q ss_pred             EEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          349 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       349 ~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++  +...   +.|..+|+.......+     +........|..+++.    .+.+..+-|..++|..++.
T Consensus       180 ~~--D~~~---~~I~~~d~dg~~~~~~-----~~~~~~~~~P~giav~----~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          180 WV--DSKL---HSISSIDVNGGNRKTI-----LEDEKRLAHPFSLAVF----EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EE--ETTT---TEEEEEETTSCSCEEE-----EECTTTTSSEEEEEEE----TTEEEEEETTTTEEEEEET
T ss_pred             EE--ECCC---CeEEEEecCCCceEEE-----eecCCccCCcEEEEEE----CCEEEEEECCCCeEEEEeC
Confidence            75  4333   5699999875433211     1221222346677763    2567777788888888764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=97.98  E-value=3.4e-06  Score=78.35  Aligned_cols=142  Identities=8%  Similarity=0.007  Sum_probs=61.0

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEE-ecCCeEEEEeccCCCCccccccCcccc
Q 014302          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSV-GCKGGICIWAPSYPGNAASVRSGAASF  188 (427)
Q Consensus       110 ~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~-g~~~~i~iw~~~~~~~~~~~~~~~~~~  188 (427)
                      ++..|++++.|+.|+.||..++  +..-... . ..+.+..+..++ .++++ +.++.+..||..         ++    
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG--~~~W~~~-~-~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~---------tG----   69 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTG--SIKWTLK-E-DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSK---------NN----   69 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTC--CEEEEEE-C-CCSCCCC------CCEEECTTTCCEEEC------------------
T ss_pred             eCCEEEEEcCCCEEEEEECCCC--CEEEEec-C-CCceecceEcCC-CEEEEeCCCCEEEEEECC---------CC----
Confidence            5678999999999999998877  2221111 2 445555566676 45555 466889999986         11    


Q ss_pred             cccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCC
Q 014302          189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTW  268 (427)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~  268 (427)
                              ...+.    ...+ .                 ....  ...++    +. ++..|++++.++.|+.||.+++
T Consensus        70 --------~~~w~----~~~~-~-----------------~~~~--~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG  112 (369)
T 2hz6_A           70 --------EGLTK----LPFT-I-----------------PELV--QASPC----RS-SDGILYMGKKQDIWYVIDLLTG  112 (369)
T ss_dssp             --------CCSEE----CSCC-H-----------------HHHH--TTCSC----C------CCCCEEEEEEEEECCC--
T ss_pred             --------ceeee----eecc-C-----------------cccc--ccCce----Ee-cCCEEEEEeCCCEEEEEECCCC
Confidence                    00000    0000 0                 0000  00011    01 2345667778899999999988


Q ss_pred             CccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          269 TSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       269 ~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      +.........   ...++|++..+++++. ++.++.|+..+.
T Consensus       113 ~~~w~~~~~~---~~~~~p~~~~v~~~~~-dg~v~a~d~~tG  150 (369)
T 2hz6_A          113 EKQQTLSSAF---ADSLSPSTSLLYLGRT-EYTITMYDTKTR  150 (369)
T ss_dssp             -----------------------EEEEEE-EEEEECCCSSSS
T ss_pred             cEEEEecCCC---cccccccCCEEEEEec-CCEEEEEECCCC
Confidence            7643221111   2345677888877654 346666666554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.94  E-value=0.00058  Score=59.00  Aligned_cols=187  Identities=12%  Similarity=0.047  Sum_probs=102.8

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccc
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAAS  180 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~  180 (427)
                      ...+.|+ ++.+..+.+.++.|+++|+.++...... .   ..........++++++..... ++.+.++|.+       
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l---~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~-------  124 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R---LGNIFAEGLASDGERLYQLTWTEGLLFTWSGM-------  124 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E---CTTCCEEEEEECSSCEEEEESSSCEEEEEETT-------
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C---CCCcceeEEEEeCCEEEEEEccCCEEEEEECC-------
Confidence            4678887 3566667777889999998887322222 2   223333223345545555543 4888899987       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                                        ....+..+.           ..+                .-+.+  ++|++.|+.+..++.|
T Consensus       125 ------------------Tl~~~~ti~-----------~~~----------------eGwGL--t~Dg~~L~vSdGs~~l  157 (268)
T 3nok_A          125 ------------------PPQRERTTR-----------YSG----------------EGWGL--CYWNGKLVRSDGGTML  157 (268)
T ss_dssp             ------------------TTEEEEEEE-----------CSS----------------CCCCE--EEETTEEEEECSSSEE
T ss_pred             ------------------cCcEEEEEe-----------CCC----------------ceeEE--ecCCCEEEEECCCCEE
Confidence                              112222111           111                11222  3678888877778999


Q ss_pred             EEEEcCCCCccccc---cCC---CCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--CccccccccccccceeeccC
Q 014302          261 YLWETNTWTSEPWS---STS---GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       261 ~iwd~~~~~~~~~~---~~~---~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  332 (427)
                      .++|..+.+.....   ...   ..+..+.|. +|+ |.........|.+++..+...  .++-....-... .......
T Consensus       158 ~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~-~~~~~~~  234 (268)
T 3nok_A          158 TFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVIDASALTRAVA-GQVTNPE  234 (268)
T ss_dssp             EEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHT-TTCCCTT
T ss_pred             EEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEECCCCccccc-ccccCcC
Confidence            99999988764332   221   244567777 675 545555555777777655421  111000000000 0001112


Q ss_pred             CceeEEEECCCCCEEEEE
Q 014302          333 QGIEKIAWDASGERLAVS  350 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~  350 (427)
                      .-.+.+||+|+++.|.++
T Consensus       235 ~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          235 AVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             CCEEEEEECTTTCCEEEE
T ss_pred             CceEEEEEcCCCCEEEEe
Confidence            356899999988888775

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.82  E-value=0.02  Score=53.39  Aligned_cols=229  Identities=13%  Similarity=0.029  Sum_probs=130.7

Q ss_pred             EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCccccccc
Q 014302          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGA  191 (427)
Q Consensus       113 ~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~  191 (427)
                      +|+.+. ...|+..+++..  ....+. .....+..++|.+.+..++.+-.. +.|..++++         ..       
T Consensus        85 ~ll~~~-~~~I~~i~l~~~--~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~---------g~-------  144 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRS--EYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD---------RA-------  144 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSC--SCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------
T ss_pred             eeEEec-cceeEEEccCCc--ceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcc---------cC-------
Confidence            555553 467888777655  222232 334578899999876566655443 667777665         00       


Q ss_pred             ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCc
Q 014302          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTS  270 (427)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~  270 (427)
                             .  .        .....              ..+.........+++.+.+..|+ +-...+.|.+.++.....
T Consensus       145 -------~--~--------~~~~~--------------~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~  193 (400)
T 3p5b_L          145 -------H--G--------VSSYD--------------TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR  193 (400)
T ss_dssp             --------------------CCCE--------------EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE
T ss_pred             -------C--C--------CCcce--------------EEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce
Confidence                   0  0        00000              00111123456788887666666 555677898888876554


Q ss_pred             cccc-cCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEE
Q 014302          271 EPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA  348 (427)
Q Consensus       271 ~~~~-~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La  348 (427)
                      ..+. ........+++.|.+.+|+.+.... ..|+.+.+.......   ..         ...-...+.|++++++..|.
T Consensus       194 ~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~---~~---------~~~l~~P~glavd~~~~~lY  261 (400)
T 3p5b_L          194 KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LV---------TENIQWPNGITLDLLSGRLY  261 (400)
T ss_dssp             EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE---EE---------CSSCSCEEEEEEETTTTEEE
T ss_pred             EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE---EE---------ECCCCceEEEEEEeCCCEEE
Confidence            3333 3445578999999877777665432 456666554431100   00         00112678999999988888


Q ss_pred             EEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          349 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       349 ~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      ++  +...   +.|..+|+.......+     +........|..++..    .+.+..+-|..++|..++
T Consensus       262 ~a--D~~~---~~I~~~d~dG~~~~~~-----~~~~~~l~~P~gl~v~----~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          262 WV--DSKL---HSISSIDVNGGNRKTI-----LEDEKRLAHPFSLAVF----EDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EE--ETTT---TEEEEEETTSCCCEEE-----EECSSTTSSEEEEEEE----TTEEEEEESSSCSEEEEE
T ss_pred             EE--ECCC---CEEEEEeCCCCccEEE-----EeCCCCCCCCEEEEEe----CCEEEEecCCCCeEEEEE
Confidence            85  4333   5699999876443322     2222223346666663    245777777888887776

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.79  E-value=0.00052  Score=69.92  Aligned_cols=119  Identities=11%  Similarity=0.092  Sum_probs=72.4

Q ss_pred             eEEEEEc-cCCCEEE-EEecCC----cEEEEEcCCC-CccccccCCCCeeEEEECCCCCEEEEEEcCC----ceeeeeee
Q 014302          239 LSILKWS-PTGDYFF-AAKFDG----TFYLWETNTW-TSEPWSSTSGFVTGATWDPEGRMILLAFAGS----LTLGSIHF  307 (427)
Q Consensus       239 v~~~~~s-p~g~~l~-~~~~dg----~v~iwd~~~~-~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~----~~i~~~~~  307 (427)
                      +...+|| |||++|| +...+|    .|+++|+.++ +..... .......++|+|||+.|++...+.    ..|+.+++
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~-~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK-VSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC-EEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc-ccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            5567899 9999888 444333    4999999887 531110 111245789999999998876543    24555555


Q ss_pred             CCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          308 ASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      ......  . ..      ............+.|||||++|+........   ..|+++|+.++
T Consensus       255 gt~~~~--~-~l------v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~---~~l~~~d~~~~  305 (751)
T 2xe4_A          255 GKLQSE--D-VC------LYEEHNPLFSAFMYKAADTNTLCIGSQSPET---AEVHLLDLRKG  305 (751)
T ss_dssp             TSCGGG--C-EE------EEECCCTTCEEEEEECTTSSEEEEEEECSSC---EEEEEEESSSC
T ss_pred             CCCchh--c-EE------EEecCCCceEEEEEECCCCCEEEEEecCCCC---ceEEEEECCCC
Confidence            432100  0 00      0000111235678999999999986543332   56999999765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=0.032  Score=53.13  Aligned_cols=72  Identities=7%  Similarity=0.067  Sum_probs=49.3

Q ss_pred             CeEEEEEccCCCEEE-EEecCCcEEEEEcC-------CCCc------c------ccc--cCCCCeeEEEECCCCCEEEEE
Q 014302          238 GLSILKWSPTGDYFF-AAKFDGTFYLWETN-------TWTS------E------PWS--STSGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~-------~~~~------~------~~~--~~~~~v~~v~~spdg~~l~~~  295 (427)
                      ....++++|++.+|+ +-..++.|..+|+.       ++..      .      .+.  ........++|+|+|++|+++
T Consensus       248 ~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYva  327 (496)
T 3kya_A          248 QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFG  327 (496)
T ss_dssp             CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEE
Confidence            345678899666666 55567789999987       4443      0      111  233456789999999987777


Q ss_pred             EcCCceeeeeeeCC
Q 014302          296 FAGSLTLGSIHFAS  309 (427)
Q Consensus       296 ~~~~~~i~~~~~~~  309 (427)
                      ......|+.++...
T Consensus       328 D~~~h~I~kid~dg  341 (496)
T 3kya_A          328 VINNHYFMRSDYDE  341 (496)
T ss_dssp             ETTTTEEEEEEEET
T ss_pred             eCCCCEEEEEecCC
Confidence            77766788776654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.62  E-value=0.0097  Score=50.83  Aligned_cols=187  Identities=14%  Similarity=0.091  Sum_probs=99.4

Q ss_pred             eeeeEEcCCCCEEEEEeCC--CeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          102 LQGVSWHQHKHIVAFISGS--TQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d--~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      +..+.|++ +.+..+.+.+  ..|+++|+.++  +..... ............++++++..... ++.+.++|.+     
T Consensus        23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tg--kv~~~~-~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~-----   93 (243)
T 3mbr_X           23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETG--RILQRA-EVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLA-----   93 (243)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCEEEEEETTTC--CEEEEE-ECCTTCCEEEEEEETTEEEEEESSSSEEEEEETT-----
T ss_pred             cccEEEEC-CEEEEECCCCCCceEEEEECCCC--CEEEEE-eCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECC-----
Confidence            56888987 5555555554  48999999887  222221 11222322223334445555543 4888899986     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                                          ....+..+...                          . .-+.+  .++++.|+.+..++
T Consensus        94 --------------------tl~~~~ti~~~--------------------------~-~Gwgl--t~dg~~L~vSdgs~  124 (243)
T 3mbr_X           94 --------------------TLTPRARFRYP--------------------------G-EGWAL--TSDDSHLYMSDGTA  124 (243)
T ss_dssp             --------------------TTEEEEEEECS--------------------------S-CCCEE--EECSSCEEEECSSS
T ss_pred             --------------------cCcEEEEEeCC--------------------------C-CceEE--eeCCCEEEEECCCC
Confidence                                11222211111                          1 11233  35788888766788


Q ss_pred             cEEEEEcCCCCccccc---cCC---CCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Ccccc-ccccccccceee
Q 014302          259 TFYLWETNTWTSEPWS---STS---GFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAH-LLPVDLPDIVSL  329 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~---~~~---~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~-~~~~~~~~~~~~  329 (427)
                      .|.++|..+.+.....   .+.   ..+..+.|. +|+ |.........|.+++..+...  .++-. ..+. ... ...
T Consensus       125 ~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~-~~~-~~~  200 (243)
T 3mbr_X          125 VIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPD-ADA-LTD  200 (243)
T ss_dssp             EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTT-TTS-CCC
T ss_pred             eEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccc-ccc-ccC
Confidence            9999999988763332   111   344556665 565 444444455666666655321  11000 0000 000 001


Q ss_pred             ccCCceeEEEECCCCCEEEEE
Q 014302          330 TGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~  350 (427)
                      ....-.+.++|+|+++.|.++
T Consensus       201 ~~~~vlNGIA~d~~~~~lfVT  221 (243)
T 3mbr_X          201 STNDVLNGIAFDAEHDRLFVT  221 (243)
T ss_dssp             TTSSCEEEEEEETTTTEEEEE
T ss_pred             CcCCceEEEEEcCCCCEEEEE
Confidence            112356899999999888886

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.55  E-value=0.034  Score=48.05  Aligned_cols=165  Identities=10%  Similarity=0.072  Sum_probs=88.1

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc--------cc--ccCCCCeeEEEECCCCCEEEEEEcCCc-eeeeee
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--------PW--SSTSGFVTGATWDPEGRMILLAFAGSL-TLGSIH  306 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--------~~--~~~~~~v~~v~~spdg~~l~~~~~~~~-~i~~~~  306 (427)
                      ....+++.+++.++++.-.++.+.++++......        ..  .........++|+|.++.|+++...+. .++.++
T Consensus        71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           71 DLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             SEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            4556777777766556556677778776554320        00  123455689999999988888776664 555555


Q ss_pred             eCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEe-eeeeeeCC-
Q 014302          307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLS-LIGFIRGP-  384 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~-~~~~~~~~-  384 (427)
                        ......  .....+.+.......-..+.+++++|....|.+.+..+     ..|.++|.+.. .+... ...-..+. 
T Consensus       151 --g~~~~~--~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s-----~~L~~~d~~g~-~~~~~~L~~g~~~l~  220 (255)
T 3qqz_A          151 --GLLSSN--ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES-----RALQEVTLVGE-VIGEMSLTKGSRGLS  220 (255)
T ss_dssp             --STTCSS--CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT-----TEEEEECTTCC-EEEEEECSTTGGGCS
T ss_pred             --ccccCC--ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCC-----CeEEEEcCCCC-EEEEEEcCCccCCcc
Confidence              210000  00000000000000112578999998766666543333     45889998765 33322 22111111 


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEE
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCT  416 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~  416 (427)
                      .....+-.|+|.++   |.+..|+ ....+..
T Consensus       221 ~~~~qpEGia~d~~---G~lyIvs-E~n~~y~  248 (255)
T 3qqz_A          221 HNIKQAEGVAMDAS---GNIYIVS-EPNRFYR  248 (255)
T ss_dssp             SCCCSEEEEEECTT---CCEEEEE-TTTEEEE
T ss_pred             cccCCCCeeEECCC---CCEEEEc-CCceEEE
Confidence            22345668999885   6666664 3334333

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.55  E-value=0.033  Score=51.62  Aligned_cols=201  Identities=9%  Similarity=0.012  Sum_probs=114.0

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      .+..++|++.+..|... ...+.|+.++++..  ....+..........+++.+.+..++.+-. .+.|.+.+++  +. 
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~--~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d--g~-  191 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGS--NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD--GA-  191 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC--CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTT--SC-
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCC--CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC--CC-
Confidence            57889999876655544 45688888887755  222222222234567888876645555443 3666665554  00 


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe-cC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK-FD  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d  257 (427)
                                          ....+                            +.........++++|.+.+|+... ..
T Consensus       192 --------------------~~~~l----------------------------~~~~l~~P~giavdp~~g~ly~td~~~  223 (386)
T 3v65_B          192 --------------------HRKVL----------------------------LWQSLEKPRAIALHPMEGTIYWTDWGN  223 (386)
T ss_dssp             --------------------SCEEE----------------------------ECSSCSCEEEEEEETTTTEEEEEECSS
T ss_pred             --------------------ceEEe----------------------------ecCCCCCCcEEEEEcCCCeEEEeccCC
Confidence                                00000                            000112456788888877777443 33


Q ss_pred             -CcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302          258 -GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       258 -g~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                       +.|..+++.......+. ..-.....++|+|++..|+.+......|..+++......   ...         .......
T Consensus       224 ~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~---~~~---------~~~~~~P  291 (386)
T 3v65_B          224 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AVI---------SQGLPHP  291 (386)
T ss_dssp             SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE---EEE---------CSSCSSE
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE---EEE---------ECCCCCc
Confidence             67888887654433332 334457899999988888888777777777776542110   000         0011255


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ..|++.  +..|..+  +...   +.|..++..++...
T Consensus       292 ~giav~--~~~ly~t--d~~~---~~V~~~~~~~G~~~  322 (386)
T 3v65_B          292 FAITVF--EDSLYWT--DWHT---KSINSANKFTGKNQ  322 (386)
T ss_dssp             EEEEEE--TTEEEEE--ETTT---TEEEEEETTTCCSC
T ss_pred             eEEEEE--CCEEEEe--eCCC---CeEEEEECCCCcce
Confidence            777773  3455554  3332   45888885555443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.53  E-value=0.051  Score=49.56  Aligned_cols=200  Identities=9%  Similarity=0.010  Sum_probs=115.3

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      .+..++|++.+..|... ...+.|..++++..  ....+..........+++.+.+..++.+-. .+.|.+.+++     
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~--~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-----  146 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGS--NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-----  146 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCC--CceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-----
Confidence            57899999877666554 45688888887765  222222222234577888876646655543 3777777765     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE-ecC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA-KFD  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~d  257 (427)
                                        +.....+                            +.........++++|.+.+|+.. ...
T Consensus       147 ------------------G~~~~~l----------------------------~~~~l~~P~~iavdp~~g~ly~td~~~  180 (349)
T 3v64_C          147 ------------------GAHRKVL----------------------------LWQSLEKPRAIALHPMEGTIYWTDWGN  180 (349)
T ss_dssp             ------------------SCSCEEE----------------------------ECTTCSCEEEEEEETTTTEEEEEECSS
T ss_pred             ------------------CCceEEE----------------------------EeCCCCCcceEEEecCcCeEEEeccCC
Confidence                              0000000                            00011235678899877777744 334


Q ss_pred             -CcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302          258 -GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       258 -g~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                       +.|..+++.......+. ..-.....++|+|++..|+.+......|..+++......   ...         ...-...
T Consensus       181 ~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~---~~~---------~~~~~~P  248 (349)
T 3v64_C          181 TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK---AVI---------SQGLPHP  248 (349)
T ss_dssp             SCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEE---------CSSCSSE
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE---EEE---------eCCCCCc
Confidence             67888887654443332 334467899999999988888777777887776543110   000         0011245


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      ..+++.  +..|..+  +...   +.|..++..++..
T Consensus       249 ~giav~--~~~ly~t--d~~~---~~V~~~~~~~G~~  278 (349)
T 3v64_C          249 FAITVF--EDSLYWT--DWHT---KSINSANKFTGKN  278 (349)
T ss_dssp             EEEEEE--TTEEEEE--ETTT---TEEEEEETTTCCS
T ss_pred             eEEEEE--CCEEEEe--cCCC---CeEEEEEccCCCc
Confidence            677773  3455554  3322   4577777545443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.51  E-value=0.063  Score=54.58  Aligned_cols=155  Identities=10%  Similarity=-0.007  Sum_probs=94.5

Q ss_pred             CeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCc
Q 014302          238 GLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSL  314 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~  314 (427)
                      ....|++.+.++.|+ +-...+.|.+.++.......+. ........|++.|.+.+|+.+.... ..|....+.......
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            455788888887777 5556788999998755543333 3445678999999877777765443 466666554431100


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEE
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  394 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (427)
                         ..         ...-.....|++++.+..|.++  +...   ..|..+++.......+     +........+..|+
T Consensus       552 ---lv---------~~~l~~P~GLavD~~~~~LYwa--D~~~---~~I~~~d~dG~~~~~v-----~~~~~~l~~P~gla  609 (791)
T 3m0c_C          552 ---LV---------TENIQWPNGITLDLLSGRLYWV--DSKL---HSISSIDVNGGNRKTI-----LEDEKRLAHPFSLA  609 (791)
T ss_dssp             ---EE---------CSSCSCEEEEEEETTTTEEEEE--ETTT---TEEEEEETTSCSCEEE-----EECTTTTSSEEEEE
T ss_pred             ---EE---------eCCCCCceEEEEecCCCeEEEE--eCCC---CcEEEEecCCCceEEE-----ecCCCccCCCCEEE
Confidence               00         0011267899999888888875  3333   4699999866544322     22222233466666


Q ss_pred             eccCCCCCceeEEEeeCceEEEEe
Q 014302          395 FHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       395 f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      +..    +.|..+-|..++|..++
T Consensus       610 v~~----~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          610 VFE----DKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             EET----TEEEEEETTTTEEEEEE
T ss_pred             EeC----CEEEEEECCCCEEEEEe
Confidence            532    35666666667776665

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.44  E-value=0.0044  Score=58.51  Aligned_cols=157  Identities=15%  Similarity=0.136  Sum_probs=93.7

Q ss_pred             CCeEEEEEcc-CCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCcee--eeeeeCCCCCC
Q 014302          237 GGLSILKWSP-TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL--GSIHFASKPPS  313 (427)
Q Consensus       237 ~~v~~~~~sp-~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i--~~~~~~~~~~~  313 (427)
                      .....++++| ++..|+++...+.|+.+|+.......+.........++|+++|++|+++....+.+  .++.+... ..
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~  215 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG  215 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence            3457889998 56677766655889999988766554445556788999999999777765533211  11111111 00


Q ss_pred             ccccccccccccceeeccCCceeEEEECC-CCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCcee
Q 014302          314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVA  392 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (427)
                      +..         ...+........++++| +|..+++   +...   +.|..|+...+....+.     .. .....|..
T Consensus       216 ~~~---------~~~l~~~~~p~giavdp~~g~lyv~---d~~~---~~V~~~~~~~~~~~~~~-----~~-~~~~~P~g  274 (430)
T 3tc9_A          216 FKV---------ITELTKGQNCNGAETHPINGELYFN---SWNA---GQVFRYDFTTQETTPLF-----TI-QDSGWEFH  274 (430)
T ss_dssp             SCS---------EEEEEECSSCCCEEECTTTCCEEEE---ETTT---TEEEEEETTTTEEEEEE-----EC-SSSSCCEE
T ss_pred             eee---------eeeeccCCCceEEEEeCCCCEEEEE---ECCC---CEEEEEECCCCcEEEEE-----Ec-CCCCccee
Confidence            100         00111123568899999 5655544   3333   56999998766542221     11 11234778


Q ss_pred             EEeccCCCCCc-eeEEEeeCceEEEEe
Q 014302          393 FSFHDKFKQGP-LLSVCWSSGFCCTYP  418 (427)
Q Consensus       393 ~~f~~~~~~g~-~l~v~~~~g~i~~~~  418 (427)
                      ++|+|+   |. +..+-...++|..|+
T Consensus       275 ia~~pd---G~~lyv~d~~~~~I~~~~  298 (430)
T 3tc9_A          275 IQFHPS---GNYAYIVVVNQHYILRSD  298 (430)
T ss_dssp             EEECTT---SSEEEEEETTTTEEEEEE
T ss_pred             EEEcCC---CCEEEEEECCCCEEEEEe
Confidence            999986   55 566666677888775

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.43  E-value=0.0059  Score=53.16  Aligned_cols=153  Identities=12%  Similarity=0.077  Sum_probs=91.9

Q ss_pred             eeEEcCCCCEEE-EEeCCCeEEEEEccCCCCccee-eccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcccc
Q 014302          104 GVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASV  181 (427)
Q Consensus       104 ~l~~sp~g~~la-t~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~  181 (427)
                      .++++  +..|. +...++.+.++|..+.  +... +..+ ..  .....++||++++++-..+.+.++|..        
T Consensus        70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~--~v~~~i~~g-~~--~g~glt~Dg~~l~vs~gs~~l~viD~~--------  134 (266)
T 2iwa_A           70 GLTLL--NEKLYQVVWLKNIGFIYDRRTL--SNIKNFTHQ-MK--DGWGLATDGKILYGSDGTSILYEIDPH--------  134 (266)
T ss_dssp             EEEEE--TTEEEEEETTCSEEEEEETTTT--EEEEEEECC-SS--SCCEEEECSSSEEEECSSSEEEEECTT--------
T ss_pred             EEEEe--CCEEEEEEecCCEEEEEECCCC--cEEEEEECC-CC--CeEEEEECCCEEEEECCCCeEEEEECC--------
Confidence            34444  44444 4456789999998766  2222 2222 11  123466788777766655788888876        


Q ss_pred             ccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEE
Q 014302          182 RSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFY  261 (427)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~  261 (427)
                       +.                .....+.-.           ..+          ........+.|. +|+..+....++.|.
T Consensus       135 -t~----------------~v~~~I~Vg-----------~~~----------~p~~~~nele~~-dg~lyvn~~~~~~V~  175 (266)
T 2iwa_A          135 -TF----------------KLIKKHNVK-----------YNG----------HRVIRLNELEYI-NGEVWANIWQTDCIA  175 (266)
T ss_dssp             -TC----------------CEEEEEECE-----------ETT----------EECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             -CC----------------cEEEEEEEC-----------CCC----------cccccceeEEEE-CCEEEEecCCCCeEE
Confidence             11                111111100           000          011235567777 664333444578999


Q ss_pred             EEEcCCCCccccccC--------------CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          262 LWETNTWTSEPWSST--------------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       262 iwd~~~~~~~~~~~~--------------~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      +.|..+++.......              ......++|+|+++.+++++.....++.+++...
T Consensus       176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            999999887433311              1356899999999999988888888998888765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.37  E-value=0.073  Score=47.79  Aligned_cols=227  Identities=10%  Similarity=0.084  Sum_probs=128.4

Q ss_pred             EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCccccccc
Q 014302          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLGA  191 (427)
Q Consensus       113 ~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~~  191 (427)
                      +|+.+ ....|+..+++............ ...+..++|.+.+..++.+-.. +.|..++.+         .+       
T Consensus         6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~---------g~-------   67 (318)
T 3sov_A            6 LLLYA-NRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFN---------KT-------   67 (318)
T ss_dssp             EEEEE-CEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETT---------SS-------
T ss_pred             EEEEE-ccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEcc---------CC-------
Confidence            44444 35678888887653122222222 2356789999876566655543 667677665         00       


Q ss_pred             ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCc
Q 014302          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTS  270 (427)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~  270 (427)
                             .           . .               ...+.........+++.+.+..|+ +-...+.|.++++.....
T Consensus        68 -------~-----------~-~---------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  113 (318)
T 3sov_A           68 -------E-----------S-V---------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  113 (318)
T ss_dssp             -------S-----------C-C---------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             -------C-----------c-e---------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence                   0           0 0               001111123455688887666666 555677899999875443


Q ss_pred             cccc-cCCCCeeEEEECCCCCEEEEEEcC-CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEE
Q 014302          271 EPWS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA  348 (427)
Q Consensus       271 ~~~~-~~~~~v~~v~~spdg~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La  348 (427)
                      ..+. ........+++.|.+..|+.+... ...|+.+++.......   ..         ...-...+.++|+|++..|.
T Consensus       114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~---------~~~l~~Pnglavd~~~~~lY  181 (318)
T 3sov_A          114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI---II---------NSEIYWPNGLTLDYEEQKLY  181 (318)
T ss_dssp             EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE---EE---------CSSCSCEEEEEEETTTTEEE
T ss_pred             EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE---EE---------ECCCCCccEEEEeccCCEEE
Confidence            3332 344567889999987777766533 3566666554321100   00         00112568999999888887


Q ss_pred             EEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          349 VSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       349 ~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .+  +...   +.|..+++.......+     +.+  ....|..+++.    .+.+..+-|..++|..++.
T Consensus       182 ~a--D~~~---~~I~~~d~dG~~~~~~-----~~~--~~~~P~glav~----~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          182 WA--DAKL---NFIHKSNLDGTNRQAV-----VKG--SLPHPFALTLF----EDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             EE--ETTT---TEEEEEETTSCSCEEE-----ECS--CCSCEEEEEEE----TTEEEEEETTTTEEEEEET
T ss_pred             EE--ECCC---CEEEEEcCCCCceEEE-----ecC--CCCCceEEEEe----CCEEEEEecCCCeEEEEEC
Confidence            75  4433   5699999865433221     111  12235566663    2456666777777777764

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.37  E-value=0.081  Score=48.13  Aligned_cols=102  Identities=10%  Similarity=0.074  Sum_probs=62.0

Q ss_pred             CeEEEEEccCCCEEEEEe-----------------cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          238 GLSILKWSPTGDYFFAAK-----------------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                      ....+.+.++|++.++..                 ..|.|.-+|.  ++.......-...+.++||||++.|+++.+...
T Consensus       166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~  243 (355)
T 3sre_A          166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAH  243 (355)
T ss_dssp             SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEEEeCCCC
Confidence            455677777776655443                 1234444443  333333334456789999999999998887777


Q ss_pred             eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECC-CCCEEEEEE
Q 014302          301 TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSY  351 (427)
Q Consensus       301 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~La~~~  351 (427)
                      .|+.+++... ..+...         ..+...+..-.+++++ +|.+.+++.
T Consensus       244 ~I~~~~~~~~-g~l~~~---------~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          244 KIHVYEKHAN-WTLTPL---------RVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             EEEEEEECTT-SCEEEE---------EEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             eEEEEEECCC-CcEecC---------EEEeCCCCCceEEEeCCCCcEEEEec
Confidence            8888887642 111110         0111234678899999 599877654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.34  E-value=0.063  Score=46.33  Aligned_cols=198  Identities=15%  Similarity=0.190  Sum_probs=109.7

Q ss_pred             ceeeeEEcCCCCEE-EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~l-at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~  178 (427)
                      .+..++|+|++..| ++...++.|...|.+ + .....+...-......|++.+++ .++++. .++.+.++++...+  
T Consensus        28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g-~v~~~i~l~g~~D~EGIa~~~~g-~~~vs~E~~~~l~~~~v~~~~--  102 (255)
T 3qqz_A           28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-G-DLIRTIPLDFVKDLETIEYIGDN-QFVISDERDYAIYVISLTPNS--  102 (255)
T ss_dssp             CEEEEEEETTTTEEEEEEETTEEEEEEETT-C-CEEEEEECSSCSSEEEEEECSTT-EEEEEETTTTEEEEEEECTTC--
T ss_pred             CcceeEEeCCCCEEEEEECCCCeEEEEeCC-C-CEEEEEecCCCCChHHeEEeCCC-EEEEEECCCCcEEEEEcCCCC--
Confidence            68999999987654 456667787777766 2 22222222223567889999888 444433 44778888876111  


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                                          ....+.           .+.+ +-+        ......+...++|+|.++.|+++....
T Consensus       103 --------------------~i~~~~-----------~~~~-~~~--------~~~~N~g~EGLA~d~~~~~L~va~E~~  142 (255)
T 3qqz_A          103 --------------------EVKILK-----------KIKI-PLQ--------ESPTNCGFEGLAYSRQDHTFWFFKEKN  142 (255)
T ss_dssp             --------------------CEEEEE-----------EEEC-CCS--------SCCCSSCCEEEEEETTTTEEEEEEESS
T ss_pred             --------------------eeeeee-----------eecc-ccc--------cccccCCcceEEEeCCCCEEEEEECcC
Confidence                                000011           1110 000        001245678899999998888776665


Q ss_pred             cEEEEEcCCC---Cccccc--------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccc-c
Q 014302          259 TFYLWETNTW---TSEPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPD-I  326 (427)
Q Consensus       259 ~v~iwd~~~~---~~~~~~--------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~  326 (427)
                      ...||.++..   ......        .....+.++++.|....+++.+.....+..++...+..  ..    ..+.. .
T Consensus       143 p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~--~~----~~L~~g~  216 (255)
T 3qqz_A          143 PIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI--GE----MSLTKGS  216 (255)
T ss_dssp             SEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--EE----EECSTTG
T ss_pred             CceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE--EE----EEcCCcc
Confidence            5556655411   011110        23346789999998777777666666666665444310  00    00000 0


Q ss_pred             eeec-cCCceeEEEECCCCCEEEE
Q 014302          327 VSLT-GSQGIEKIAWDASGERLAV  349 (427)
Q Consensus       327 ~~~~-~~~~i~~v~~sp~g~~La~  349 (427)
                      ..+. .-.....|+|+++|+..++
T Consensus       217 ~~l~~~~~qpEGia~d~~G~lyIv  240 (255)
T 3qqz_A          217 RGLSHNIKQAEGVAMDASGNIYIV  240 (255)
T ss_dssp             GGCSSCCCSEEEEEECTTCCEEEE
T ss_pred             CCcccccCCCCeeEECCCCCEEEE
Confidence            0000 0114688999999986666

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.28  E-value=0.0017  Score=65.30  Aligned_cols=153  Identities=10%  Similarity=-0.010  Sum_probs=84.1

Q ss_pred             EEEEccCCCEEE-EEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCcccc
Q 014302          241 ILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAH  317 (427)
Q Consensus       241 ~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~  317 (427)
                      .+++.+.+..|+ +-...+.|.++++.......+. ........+++.|.+.+|+.+.... +.|+.+.+.......   
T Consensus       457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~---  533 (699)
T 1n7d_A          457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---  533 (699)
T ss_dssp             CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE---
T ss_pred             eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE---
Confidence            466665444444 4345677888887655433332 2234567889999777766554332 355555443321100   


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                      ..         ...-...+.|+|+|++..|.++  +...   +.|.++++.......+     +........|..|++..
T Consensus       534 l~---------~~~l~~PnGlavd~~~~~LY~a--D~~~---~~I~~~d~dG~~~~~~-----~~~~~~~~~P~glavd~  594 (699)
T 1n7d_A          534 LV---------TENIQWPNGITLDLLSGRLYWV--DSKL---HSISSIDVNGGNRKTI-----LEDEKRLAHPFSLAVFE  594 (699)
T ss_dssp             ES---------CSSCSSCCCEEECTTTCCEEEE--ETTT---TEEEEECSSSSCCEEE-----CCCSSSCSSCCCCEEET
T ss_pred             EE---------eCCCCCccEEEEeccCCEEEEE--ecCC---CeEEEEccCCCceEEE-----EecCCcCCCceEeEEEC
Confidence            00         0011246789999988877775  3333   5699999865433322     11111222345555543


Q ss_pred             CCCCCceeEEEeeCceEEEEec
Q 014302          398 KFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       398 ~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                          +.++.+.|..++|..++.
T Consensus       595 ----~~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          595 ----DKVFWTDIINEAIFSANR  612 (699)
T ss_dssp             ----TEEEEECSTTTCEEEEET
T ss_pred             ----CEEEEEeCCCCeEEEEEc
Confidence                356777778888887763

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.27  E-value=0.098  Score=53.47  Aligned_cols=242  Identities=10%  Similarity=0.069  Sum_probs=132.1

Q ss_pred             CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeecc----CCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS----DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus        98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~----~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      ....|.++...++|+.|-.|+.++-+.+|+...+  .......    .....|.++...++| .+.++.. +++.+|+..
T Consensus       404 ~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~--~~~~~~~~~~~l~~~~v~~i~~d~~g-~lwigt~-~Gl~~~~~~  479 (795)
T 4a2l_A          404 GSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG--QVENFNQRNSQLVNENVYAILPDGEG-NLWLGTL-SALVRFNPE  479 (795)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC--CEEEECTTTSCCSCSCEEEEEECSSS-CEEEEES-SCEEEEETT
T ss_pred             CCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC--cEEEeecCCCCcCCCeeEEEEECCCC-CEEEEec-CceeEEeCC
Confidence            3457899999888885666777777888887665  2222211    134578999888888 5554444 678888875


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEE
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFA  253 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~  253 (427)
                               ++              .+....   ..           .+.        -......|.++...++|+..+.
T Consensus       480 ---------~~--------------~~~~~~---~~-----------~~~--------~~~~~~~i~~i~~d~~g~lWig  514 (795)
T 4a2l_A          480 ---------QR--------------SFTTIE---KE-----------KDG--------TPVVSKQITTLFRDSHKRLWIG  514 (795)
T ss_dssp             ---------TT--------------EEEECC---BC-----------TTC--------CBCCCCCEEEEEECTTCCEEEE
T ss_pred             ---------CC--------------eEEEcc---cc-----------ccc--------cccCCceEEEEEECCCCCEEEE
Confidence                     11              111100   00           000        0001245778888888875553


Q ss_pred             EecCCcEEEEEcCCCCccccc-------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccc
Q 014302          254 AKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDI  326 (427)
Q Consensus       254 ~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  326 (427)
                      . . +.|..||..+.+. .+.       .....|.++...++|+..+.+ ..  -+..++....  .+..    .  ...
T Consensus       515 t-~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~--Gl~~~d~~~~--~~~~----~--~~~  580 (795)
T 4a2l_A          515 G-E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE--GFYCFNEKDK--QIKR----Y--NTT  580 (795)
T ss_dssp             E-S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS--CEEEEETTTT--EEEE----E--CGG
T ss_pred             e-C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC--CceeECCCCC--cEEE----e--CCC
Confidence            3 3 5688888776543 211       234578899999999876643 33  2444443222  1110    0  000


Q ss_pred             eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCC-CceeEEeccCCCCCcee
Q 014302          327 VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNP-KPVAFSFHDKFKQGPLL  405 (427)
Q Consensus       327 ~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~g~~l  405 (427)
                      ..+ ....|.++..+++|...+++  . .     -|..|+.++........   ..+..... ...++...+   +| .|
T Consensus       581 ~gl-~~~~i~~i~~d~~g~lWi~t--~-~-----Gl~~~~~~~~~~~~~~~---~dGl~~~~f~~~~~~~~~---~G-~l  644 (795)
T 4a2l_A          581 NGL-PNNVVYGILEDSFGRLWLST--N-R-----GISCFNPETEKFRNFTE---SDGLQSNQFNTASYCRTS---VG-QM  644 (795)
T ss_dssp             GTC-SCSCEEEEEECTTSCEEEEE--T-T-----EEEEEETTTTEEEEECG---GGTCSCSCEEEEEEEECT---TS-CE
T ss_pred             CCC-chhheEEEEECCCCCEEEEc--C-C-----ceEEEcCCCCcEEEcCC---cCCCccccCccCceeECC---CC-eE
Confidence            001 12368899999999887764  2 1     17888887765442221   11111110 011222222   24 36


Q ss_pred             EEEeeCceEEEEe
Q 014302          406 SVCWSSGFCCTYP  418 (427)
Q Consensus       406 ~v~~~~g~i~~~~  418 (427)
                      -+|..+|-+.+-|
T Consensus       645 ~~g~~~Gl~~~~p  657 (795)
T 4a2l_A          645 YFGGINGITTFRP  657 (795)
T ss_dssp             EEEETTEEEEECG
T ss_pred             EEecCCceEEEcH
Confidence            6677888777665

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.25  E-value=0.033  Score=49.97  Aligned_cols=114  Identities=9%  Similarity=-0.041  Sum_probs=63.8

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-----cCCCCeeEEEECC-CCCEEEEEEcC-------------
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----STSGFVTGATWDP-EGRMILLAFAG-------------  298 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~v~~sp-dg~~l~~~~~~-------------  298 (427)
                      ....+++.+++..|+++...+.|..+|..++....+.     ........+++.+ +|+..++....             
T Consensus        81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~  160 (322)
T 2fp8_A           81 RTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDT  160 (322)
T ss_dssp             CEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHH
T ss_pred             CCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcc
Confidence            4677889873345555555566888887654432222     1123467899999 99766543221             


Q ss_pred             ---CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          299 ---SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       299 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                         .+.++.++.....  .    .       .....-...+.++|+|+|++|.++-..  .   +.|.+|++..
T Consensus       161 ~~~~g~v~~~d~~~~~--~----~-------~~~~~~~~p~gia~~~dg~~lyv~d~~--~---~~I~~~~~~~  216 (322)
T 2fp8_A          161 SDKTGRLIKYDPSTKE--T----T-------LLLKELHVPGGAEVSADSSFVLVAEFL--S---HQIVKYWLEG  216 (322)
T ss_dssp             TCCCEEEEEEETTTTE--E----E-------EEEEEESCCCEEEECTTSSEEEEEEGG--G---TEEEEEESSS
T ss_pred             cCCCceEEEEeCCCCE--E----E-------EeccCCccCcceEECCCCCEEEEEeCC--C---CeEEEEECCC
Confidence               1233333322110  0    0       000011245789999999988775322  2   4599999875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.23  E-value=0.11  Score=46.63  Aligned_cols=205  Identities=7%  Similarity=-0.021  Sum_probs=114.3

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~  176 (427)
                      ...+++|++.+..|..+ ..++.|..++++..  ......+..........+++.+.+..++.+- ..+.|.+.+.+   
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~---  107 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK---  107 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCC---
Confidence            56799999977655554 45689988887751  0112222222223457888887654555553 44778777765   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                                          +.....+                            +.........++++|.+.+|+.+..
T Consensus       108 --------------------g~~~~~~----------------------------~~~~~~~P~~iavdp~~g~ly~~d~  139 (316)
T 1ijq_A          108 --------------------GVKRKTL----------------------------FRENGSKPRAIVVDPVHGFMYWTDW  139 (316)
T ss_dssp             --------------------SSSEEEE----------------------------EECTTCCEEEEEEETTTTEEEEEEC
T ss_pred             --------------------CCceEEE----------------------------EECCCCCcceEEeCCCCCEEEEEcc
Confidence                                0000000                            0001224567888887777775443


Q ss_pred             C--CcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCC
Q 014302          257 D--GTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  333 (427)
Q Consensus       257 d--g~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (427)
                      .  +.|...++.......+. ..-.....++|++++..|+.+......|..+++.......    . ..     ....-.
T Consensus       140 ~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~----~-~~-----~~~~~~  209 (316)
T 1ijq_A          140 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT----I-LE-----DEKRLA  209 (316)
T ss_dssp             SSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----E-EE-----CTTTTS
T ss_pred             CCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEE----E-ee-----cCCccC
Confidence            3  67888887543332222 2345678999999999888887776778887765431100    0 00     000112


Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ....+++.  +..|.++  +...   +.|..++..++...
T Consensus       210 ~P~giav~--~~~ly~~--d~~~---~~V~~~~~~~g~~~  242 (316)
T 1ijq_A          210 HPFSLAVF--EDKVFWT--DIIN---EAIFSANRLTGSDV  242 (316)
T ss_dssp             SEEEEEEE--TTEEEEE--ETTT---TEEEEEETTTCCCC
T ss_pred             CcEEEEEE--CCEEEEE--ECCC---CeEEEEeCCCCcce
Confidence            45677774  3455554  3332   55888887665543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.16  E-value=0.28  Score=50.13  Aligned_cols=249  Identities=12%  Similarity=0.088  Sum_probs=128.9

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee-ccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      |.++...++|.+.+ ++.++.+..|+....  ..... .......|.++...+++ .+.++...+++.+|+..       
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~--~~~~~~~~~~~~~i~~i~~d~~g-~lwigt~~~Gl~~~~~~-------  243 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQK--TFEKVIPILGTKQIQAILQQSPT-RIWVATEGAGLFLINPK-------  243 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTC--CEEECC----CCCEEEEEEEETT-EEEEEEBSSCEEEEETT-------
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCC--eEEEecCCCCCCeeEEEEEcCCC-CEEEEECCCCeEEEeCC-------
Confidence            78888888887555 555545777776554  22111 11234568888888887 56555555678888875       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                        ++              .+...   .           ..+..       ........|.++...++|...+ |+.+ .|
T Consensus       244 --~~--------------~~~~~---~-----------~~~~~-------~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl  284 (795)
T 4a2l_A          244 --TK--------------EIKNY---L-----------HSPSN-------PKSISSNYIRSLAMDSQNRLWI-GTFN-DL  284 (795)
T ss_dssp             --TT--------------EEEEE---C-----------CCTTC-------TTSCSCSBEEEEEECTTSCEEE-EESS-CE
T ss_pred             --CC--------------eEEEe---e-----------cCCCC-------ccccCCCeEEEEEEcCCCCEEE-EeCC-hh
Confidence              11              11110   0           00000       0000124578888888887544 4444 68


Q ss_pred             EEEEcCCCCccccc--------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccC
Q 014302          261 YLWETNTWTSEPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGS  332 (427)
Q Consensus       261 ~iwd~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (427)
                      .+||..+.....+.        -....|.++...++|...+ ++.++ -+..++.....  +.. ....  ..... ...
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~-Gl~~~~~~~~~--~~~-~~~~--~~~~~-l~~  356 (795)
T 4a2l_A          285 NIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFG-GLNYYHPIRNR--FKN-IRNI--PYKNS-LSD  356 (795)
T ss_dssp             EEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSS-CEEEECGGGGS--SEE-ECCC--TTSSS-CSC
T ss_pred             heEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCC-CeEEeCCCccc--ceE-EcCC--CCCCC-CCC
Confidence            88987765543221        1345799999999998765 44433 33333322211  100 0000  00000 112


Q ss_pred             CceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee-eeeCCCCCCCceeEEeccCCCCCceeEEEeeC
Q 014302          333 QGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG-FIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSS  411 (427)
Q Consensus       333 ~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~  411 (427)
                      ..|.++..+++|...+.+..+       -|..|+..++......... .-..........++...+   +|.+|.+|..+
T Consensus       357 ~~V~~i~~d~~g~lWiGt~~~-------Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~---~g~~lWigt~~  426 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLWIGTNDG-------GLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE---KKSLVYIGTHA  426 (795)
T ss_dssp             SSEEEEEECTTSCEEEEESSS-------CEEEECTTTCCEEEECCC------CCSCSCEEEEEEET---TTTEEEEEETT
T ss_pred             CeeEEEEECCCCCEEEEECCC-------CeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC---CCCEEEEEeCc
Confidence            368999999999876553211       2889998776654332110 000000112234444433   35557777665


Q ss_pred             ceEEEEe
Q 014302          412 GFCCTYP  418 (427)
Q Consensus       412 g~i~~~~  418 (427)
                      +-|..|+
T Consensus       427 ~Gl~~~d  433 (795)
T 4a2l_A          427 GGLSILH  433 (795)
T ss_dssp             TEEEEEE
T ss_pred             CceeEEe
Confidence            5566654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.07  E-value=0.0087  Score=51.65  Aligned_cols=152  Identities=8%  Similarity=0.023  Sum_probs=86.9

Q ss_pred             eEEEEEccCCCEEEEEecCC--cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccc
Q 014302          239 LSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  316 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~  316 (427)
                      ...+.|+ ++.++.+.+.+|  .|+++|+.+++.................+++..|......++.+.+++..+...    
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~----  119 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQ----  119 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCE----
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcE----
Confidence            3567888 664444666666  899999999987544433333333333345677777777777788777765421    


Q ss_pred             cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302          317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  396 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  396 (427)
                               ...+...+.-..++  +|++.|.++  .++    ..|.++|..+.+.....+.+.  ..........+.|.
T Consensus       120 ---------~~ti~~~~eG~glt--~dg~~L~~S--dGs----~~i~~iDp~T~~v~~~I~V~~--~g~~~~~lNELe~~  180 (262)
T 3nol_A          120 ---------VRSFNYDGEGWGLT--HNDQYLIMS--DGT----PVLRFLDPESLTPVRTITVTA--HGEELPELNELEWV  180 (262)
T ss_dssp             ---------EEEEECSSCCCCEE--ECSSCEEEC--CSS----SEEEEECTTTCSEEEEEECEE--TTEECCCEEEEEEE
T ss_pred             ---------EEEEECCCCceEEe--cCCCEEEEE--CCC----CeEEEEcCCCCeEEEEEEecc--CCccccccceeEEE
Confidence                     01111111113333  567888774  322    459999999887764443321  10000111234443


Q ss_pred             cCCCCCceeEEEeeCceEEEEe
Q 014302          397 DKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       397 ~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                          +|.+.+..|.+..|..++
T Consensus       181 ----~G~lyan~w~~~~I~vID  198 (262)
T 3nol_A          181 ----DGEIFANVWQTNKIVRID  198 (262)
T ss_dssp             ----TTEEEEEETTSSEEEEEC
T ss_pred             ----CCEEEEEEccCCeEEEEE
Confidence                367777778777777665

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.99  E-value=0.13  Score=45.75  Aligned_cols=159  Identities=15%  Similarity=0.051  Sum_probs=77.3

Q ss_pred             CeEEEEEccCCCEEEEEecCC--cEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCC
Q 014302          238 GLSILKWSPTGDYFFAAKFDG--TFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPS  313 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg--~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~  313 (427)
                      ....++++++|+.+++.....  .|..+|..+++...+.  ........++..+++. ++++....+.++.++.......
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~  151 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGS  151 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEe
Confidence            356788889988555443322  4666676666543222  1222334555555444 4444444556776665432100


Q ss_pred             c---cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEecc-CceEEEeeeeeeeCCCCCCC
Q 014302          314 L---DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARR-TPLISLSLIGFIRGPGDNPK  389 (427)
Q Consensus       314 ~---~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~  389 (427)
                      +   .........     ...-...+.+  +|++++|.++  ....   +.|.+|++.. +.+-...  -+...    ..
T Consensus       152 v~~~~~~~~~~~~-----~~~~~~pngi--s~dg~~lyv~--d~~~---~~I~~~~~~~~g~~~~~~--~~~~~----~~  213 (306)
T 2p4o_A          152 IWLEHPMLARSNS-----ESVFPAANGL--KRFGNFLYVS--NTEK---MLLLRIPVDSTDKPGEPE--IFVEQ----TN  213 (306)
T ss_dssp             EEEECGGGSCSST-----TCCSCSEEEE--EEETTEEEEE--ETTT---TEEEEEEBCTTSCBCCCE--EEEES----CC
T ss_pred             EEEECCccccccc-----cCCCCcCCCc--CcCCCEEEEE--eCCC---CEEEEEEeCCCCCCCccE--EEecc----CC
Confidence            0   000000000     0000134455  8899888876  3333   4699999864 3221000  01111    12


Q ss_pred             ceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          390 PVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       390 ~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      |-.+++.++   |.++...+..++|..|+
T Consensus       214 P~gi~vd~d---G~l~va~~~~~~V~~~~  239 (306)
T 2p4o_A          214 IDDFAFDVE---GNLYGATHIYNSVVRIA  239 (306)
T ss_dssp             CSSEEEBTT---CCEEEECBTTCCEEEEC
T ss_pred             CCCeEECCC---CCEEEEeCCCCeEEEEC
Confidence            445666654   55655556667777665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.99  E-value=0.19  Score=45.24  Aligned_cols=166  Identities=11%  Similarity=0.146  Sum_probs=88.0

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCC-CCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDS-GKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      ..+.+|.|++ +..++++ ..+.|.. ..+.+ ..........+...+..+.+.+++ .+++++.++.+.  ...     
T Consensus        80 ~~~~~i~~~~-~~~~~~g-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~g~v~--~S~-----  148 (327)
T 2xbg_A           80 YRFNSVSFQG-NEGWIVG-EPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNG-SAEMITNVGAIY--RTK-----  148 (327)
T ss_dssp             CEEEEEEEET-TEEEEEE-ETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETT-EEEEEETTCCEE--EES-----
T ss_pred             ccEEEEEecC-CeEEEEE-CCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCC-CEEEEeCCccEE--EEc-----
Confidence            3688899986 4555544 5665433 22222 111111111233457788887776 677777666542  221     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC---ceEEe--------------ccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG---TPIRR--------------GFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~---~~~~~--------------~~~~v~~  241 (427)
                                      +++..|..+..   .....+..+++.|++++++.+   ..++.              ....+..
T Consensus       149 ----------------DgG~tW~~~~~---~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~  209 (327)
T 2xbg_A          149 ----------------DSGKNWQALVQ---EAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHN  209 (327)
T ss_dssp             ----------------STTSSEEEEEC---SCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEE
T ss_pred             ----------------CCCCCCEEeec---CCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccce
Confidence                            11223333321   113456677777777664321   11111              1245677


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcC---CCCccccc--cCCCCeeEEEECCCCCEEEEEE
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETN---TWTSEPWS--STSGFVTGATWDPEGRMILLAF  296 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~---~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~  296 (427)
                      +.++++++.++ .+.+|.+++.+..   +.+.....  .....+.++.+.+++..++++.
T Consensus       210 ~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          210 MGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             EEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             eEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC
Confidence            88889887554 4457888776422   22221111  1234588999999888777543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.97  E-value=0.011  Score=51.17  Aligned_cols=150  Identities=11%  Similarity=0.011  Sum_probs=86.0

Q ss_pred             eEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccc
Q 014302          239 LSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  317 (427)
Q Consensus       239 v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~  317 (427)
                      ...+.|+  +..|+ +.+.+|.|+++|+.+++..... ........-..+++..|+.....++.+.+++..+...     
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~-----  128 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR-----  128 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE-----
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE-----
Confidence            3567776  34555 7778889999999999874433 2233333222334566666667777777777765411     


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                              ...+...+.-..++  +|++.|.++  .++    +.|.++|.++.+.....+.+.  ..........+.|. 
T Consensus       129 --------~~ti~~~~eGwGLt--~Dg~~L~vS--dGs----~~l~~iDp~T~~v~~~I~V~~--~g~~v~~lNeLe~~-  189 (268)
T 3nok_A          129 --------ERTTRYSGEGWGLC--YWNGKLVRS--DGG----TMLTFHEPDGFALVGAVQVKL--RGQPVELINELECA-  189 (268)
T ss_dssp             --------EEEEECSSCCCCEE--EETTEEEEE--CSS----SEEEEECTTTCCEEEEEECEE--TTEECCCEEEEEEE-
T ss_pred             --------EEEEeCCCceeEEe--cCCCEEEEE--CCC----CEEEEEcCCCCeEEEEEEeCC--CCcccccccccEEe-
Confidence                    00111111113444  568888885  332    469999999887764443322  11111112234443 


Q ss_pred             CCCCCceeEEEeeCceEEEEe
Q 014302          398 KFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       398 ~~~~g~~l~v~~~~g~i~~~~  418 (427)
                         +|.+.+..|.+..|..++
T Consensus       190 ---dG~lyanvw~s~~I~vID  207 (268)
T 3nok_A          190 ---NGVIYANIWHSSDVLEID  207 (268)
T ss_dssp             ---TTEEEEEETTCSEEEEEC
T ss_pred             ---CCEEEEEECCCCeEEEEe
Confidence               367777778777777765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.92  E-value=0.00032  Score=64.89  Aligned_cols=106  Identities=12%  Similarity=0.083  Sum_probs=41.5

Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCC-Ce-eEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSG-FV-TGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~-~v-~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      +..+++.+++++.|+.|+.||..+++.. .+..+.. .+ .+.++. ++..+++++ .++.++.++..+......-.   
T Consensus        45 ~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~-~dg~v~a~D~~tG~~~w~~~---  119 (369)
T 2hz6_A           45 THVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGK-KQDIWYVIDLLTGEKQQTLS---  119 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCE-EEEEEEEECCC------------
T ss_pred             eEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEe-CCCEEEEEECCCCcEEEEec---
Confidence            3456767777788999999999887653 2211100 01 111121 234455443 34467777766542211000   


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                                ..   ....++|++..|+++   +.+   +.|+.||.++++.+
T Consensus       120 ----------~~---~~~~~~p~~~~v~~~---~~d---g~v~a~d~~tG~~~  153 (369)
T 2hz6_A          120 ----------SA---FADSLSPSTSLLYLG---RTE---YTITMYDTKTRELR  153 (369)
T ss_dssp             --------------------------EEEE---EEE---EEEECCCSSSSSCC
T ss_pred             ----------CC---CcccccccCCEEEEE---ecC---CEEEEEECCCCCEE
Confidence                      00   013456678888773   333   67999999988764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.90  E-value=0.11  Score=46.34  Aligned_cols=219  Identities=10%  Similarity=-0.036  Sum_probs=108.6

Q ss_pred             CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccc
Q 014302          111 KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLG  190 (427)
Q Consensus       111 g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~  190 (427)
                      +..|.+++.++.+..+|.. +  ............+.++...+++ .+++...++.+..++..  +.             
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~~~~g-~l~vgt~~~~l~~~d~~--g~-------------  167 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-G--TEKWRFKTKKAIYATPIVSEDG-TIYVGSNDNYLYAINPD--GT-------------  167 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-S--CEEEEEECSSCCCSCCEECTTS-CEEEECTTSEEEEECTT--SC-------------
T ss_pred             CCEEEEEecCCEEEEEcCC-C--CEEEEEcCCCceeeeeEEcCCC-EEEEEcCCCEEEEECCC--CC-------------
Confidence            4456667777888777766 3  1222222233345666666666 55555555777777754  00             


Q ss_pred             cccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCc
Q 014302          191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTS  270 (427)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~  270 (427)
                              .   ...+.                          .....+.++...+++...+ ++  +.|..+| .+++.
T Consensus       168 --------~---~~~~~--------------------------~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~  206 (330)
T 3hxj_A          168 --------E---KWRFK--------------------------TNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE  206 (330)
T ss_dssp             --------E---EEEEE--------------------------CSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE
T ss_pred             --------E---eEEEe--------------------------cCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE
Confidence                    0   00000                          0111233455556666443 44  7788888 54443


Q ss_pred             c-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEE
Q 014302          271 E-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAV  349 (427)
Q Consensus       271 ~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~  349 (427)
                      . ........+.++...++|...+ ++.++ .+..++....  .+. +.          ......+..+.+++++...+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~g~l~v-~t~~~-gl~~~~~~g~--~~~-~~----------~~~~~~~~~~~~~~~g~l~v~  271 (330)
T 3hxj_A          207 KWNFYAGYWTVTRPAISEDGTIYV-TSLDG-HLYAINPDGT--EKW-RF----------KTGKRIESSPVIGNTDTIYFG  271 (330)
T ss_dssp             EEEECCSSCCCSCCEECTTSCEEE-EETTT-EEEEECTTSC--EEE-EE----------ECSSCCCSCCEECTTSCEEEE
T ss_pred             EEEEccCCcceeceEECCCCeEEE-EcCCC-eEEEECCCCC--EeE-Ee----------eCCCCccccceEcCCCeEEEe
Confidence            2 2223345678888888887655 44433 4444432111  000 00          001112345566777765544


Q ss_pred             EEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEeccccC
Q 014302          350 SYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLIFRS  423 (427)
Q Consensus       350 ~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~~~~  423 (427)
                          +.+   |.|..+|. ++..+....     .....  ..++...+   +| .|-+|..+|.+.+.+.-.+.
T Consensus       272 ----t~~---ggl~~~d~-~g~~~~~~~-----~~~~~--~~~~~~d~---~g-~l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          272 ----SYD---GHLYAINP-DGTEKWNFE-----TGSWI--IATPVIDE---NG-TIYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             ----CTT---CEEEEECT-TSCEEEEEE-----CSSCC--CSCCEECT---TC-CEEEECTTSCEEEEEC----
T ss_pred             ----cCC---CCEEEECC-CCcEEEEEE-----cCCcc--ccceEEcC---CC-EEEEEcCCCeEEEEeccccc
Confidence                333   45888885 555432211     11111  12232322   23 47789999999999865543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.89  E-value=0.31  Score=49.49  Aligned_cols=159  Identities=8%  Similarity=0.006  Sum_probs=95.1

Q ss_pred             ceeeeEEcCCCCEEEE-EeCCCeEEEEEccCCC--CcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAF-ISGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat-~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~  176 (427)
                      .+.+|+|++.+..|.. -...+.|+.++++...  .....+..........|++.+.+.+++.+-.. +.|.+.+++   
T Consensus       425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld---  501 (791)
T 3m0c_C          425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK---  501 (791)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---
T ss_pred             ceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC---
Confidence            5778999986665544 4456788888876531  11222333233456788888877556555443 777777765   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                                          +.....                            .+.........|+++|.+.+|+....
T Consensus       502 --------------------G~~~~~----------------------------l~~~~l~~P~gIaVDp~~g~LYwtD~  533 (791)
T 3m0c_C          502 --------------------GVKRKT----------------------------LFRENGSKPRAIVVDPVHGFMYWTDW  533 (791)
T ss_dssp             --------------------SSSEEE----------------------------EEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred             --------------------CCeEEE----------------------------EEeCCCCCcceEEEecCCCCEEEecC
Confidence                                000000                            01111234667888888777775543


Q ss_pred             --CCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          257 --DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       257 --dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                        .+.|.+.++.......+. ..-.....|++.+.+..|+.+-.....|..+++...
T Consensus       534 g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          534 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             SSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence              267888887655443333 333578899999888888887766667777776543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.85  E-value=0.25  Score=44.51  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=71.9

Q ss_pred             CeEEEEE--ccC-CC-EEEEEecCCcEEEEEcCC---CCc----cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          238 GLSILKW--SPT-GD-YFFAAKFDGTFYLWETNT---WTS----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       238 ~v~~~~~--sp~-g~-~l~~~~~dg~v~iwd~~~---~~~----~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                      .++.+++  +|. ++ ++++...+|.+..|++..   ++.    .......+.+..+...+....|+++-.+. .|+.++
T Consensus       129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~-GIw~~d  207 (355)
T 3amr_A          129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDE-AIWKFS  207 (355)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred             CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEecccc-eEEEEe
Confidence            4455665  664 44 566888899999999843   211    12224556788899998888888775554 455555


Q ss_pred             eCCCCCCccccccccccccceeeccCCceeEEEE--CCCCC-EEEEEEecCCCcceeEEEEEEec-cCceE
Q 014302          307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW--DASGE-RLAVSYKGGDDIYKGLIAIYDAR-RTPLI  373 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--sp~g~-~La~~~~~~~d~~~g~i~vwd~~-~~~~~  373 (427)
                      ...... ......  ..  ...-.....+..|++  .++++ ||+++..+.     .+..|||.+ ..+.+
T Consensus       208 a~p~~~-~~~~~v--~~--~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~-----~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          208 AEPDGG-SNGTVI--DR--ADGRHLTRDIEGLTIYYAADGKGYLMASSQGN-----SSYAIYDRQGKNKYV  268 (355)
T ss_dssp             CSTTSC-SCCEEE--EE--BSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG-----TEEEEEESSTTCCEE
T ss_pred             CCcCCC-CCceEE--EE--ecCCccccCcceEEEEecCCCCEEEEEEcCCC-----CEEEEEECCCCCcEE
Confidence            333210 000000  00  000001136788887  56777 777765554     359999997 44444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.85  E-value=0.25  Score=44.42  Aligned_cols=155  Identities=17%  Similarity=0.281  Sum_probs=77.1

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEc--CCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWET--NTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  314 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~--~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~  314 (427)
                      ..+..+.+.+++++++++...+.++-+|-  .+.+... ......+..+.+.++++.++.+ .+ +.++... .+.-.++
T Consensus       163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~-~~-G~~~~s~-~D~G~tW  238 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIV-NG-GKIAFSD-PDNSENW  238 (327)
T ss_dssp             CCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEE-TT-TEEEEEE-TTEEEEE
T ss_pred             cceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEe-CC-ceEEEec-CCCCCee
Confidence            46788899999888776654333333442  2222221 1345678889999999877543 33 3333321 1100000


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEE
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  394 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (427)
                      ..    +..+   .+.....+.++++.+++..+++   +..    |.| ++....+..-.....    .........++.
T Consensus       239 ~~----~~~~---~~~~~~~~~~v~~~~~~~~~~~---g~~----g~i-~~S~DgG~tW~~~~~----~~~~~~~~~~v~  299 (327)
T 2xbg_A          239 GE----LLSP---LRRNSVGFLDLAYRTPNEVWLA---GGA----GAL-LCSQDGGQTWQQDVD----VKKVPSNFYKIL  299 (327)
T ss_dssp             CC----CBCT---TSSCCSCEEEEEESSSSCEEEE---EST----TCE-EEESSTTSSCEECGG----GTTSSSCCCEEE
T ss_pred             Ee----ccCC---cccCCcceEEEEecCCCEEEEE---eCC----CeE-EEeCCCCcccEEcCc----cCCCCCCeEEEE
Confidence            00    0000   0011125788999998888877   332    334 333333332211110    001112345677


Q ss_pred             eccCCCCCceeEEEeeCceEEEEe
Q 014302          395 FHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       395 f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      |.+.   +.++++| .+|.|.-++
T Consensus       300 ~~~~---~~~~~~G-~~G~i~~~~  319 (327)
T 2xbg_A          300 FFSP---DQGFILG-QKGILLRYV  319 (327)
T ss_dssp             EEET---TEEEEEC-STTEEEEEC
T ss_pred             EECC---CceEEEc-CCceEEEEc
Confidence            7642   4556665 788877664

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.82  E-value=0.14  Score=51.21  Aligned_cols=22  Identities=18%  Similarity=0.007  Sum_probs=18.2

Q ss_pred             CCCEEEEEeCCCeEEEEEccCC
Q 014302          110 HKHIVAFISGSTQVIVRDYEDS  131 (427)
Q Consensus       110 ~g~~lat~~~d~~v~vwd~~~~  131 (427)
                      ++..|++++.|+.+..+|..++
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG  148 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATG  148 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTC
T ss_pred             ECCEEEEEcCCCEEEEEECCCC
Confidence            4567888888999999998777

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.82  E-value=0.11  Score=51.69  Aligned_cols=69  Identities=10%  Similarity=0.056  Sum_probs=44.3

Q ss_pred             eeEEcC-CCCEEEEEeCCC-----------eEEEEEccCCCCcceeec-cCCcCCeeEEEEccCCCceEEEecC--CeEE
Q 014302          104 GVSWHQ-HKHIVAFISGST-----------QVIVRDYEDSGKDACILT-SDSQRDVKVLEWRPNGGRSLSVGCK--GGIC  168 (427)
Q Consensus       104 ~l~~sp-~g~~lat~~~d~-----------~v~vwd~~~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~la~g~~--~~i~  168 (427)
                      ++++.| ++++++.|+.+.           .+.+||..+......... ..+.....++++.+++ ++++.|+.  ..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC-CEEEeCCCCCCceE
Confidence            556777 888888887543           577888877744333222 2233334457788888 67776653  5688


Q ss_pred             EEecc
Q 014302          169 IWAPS  173 (427)
Q Consensus       169 iw~~~  173 (427)
                      +||..
T Consensus       269 ~yd~~  273 (656)
T 1k3i_A          269 LYDSS  273 (656)
T ss_dssp             EEEGG
T ss_pred             EecCc
Confidence            88876

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.78  E-value=0.27  Score=43.98  Aligned_cols=201  Identities=8%  Similarity=-0.001  Sum_probs=115.3

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      .+.+++|++.+..|... ...+.|..++++...........+ -.....+++.+.+..++.+-. .+.|.+++.+     
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-----  109 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-----  109 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECC-----
Confidence            46789999976655444 456888888876652112222222 234667888876545555543 4777777765     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec--
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF--  256 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~--  256 (427)
                                        +.....+                            +.........+++.|.+.+|+.+..  
T Consensus       110 ------------------G~~~~~l----------------------------~~~~~~~P~giavdp~~g~ly~td~~~  143 (318)
T 3sov_A          110 ------------------GSLRKVL----------------------------FWQELDQPRAIALDPSSGFMYWTDWGE  143 (318)
T ss_dssp             ------------------SCSCEEE----------------------------ECSSCSSEEEEEEEGGGTEEEEEECSS
T ss_pred             ------------------CCcEEEE----------------------------EeCCCCCccEEEEeCCCCEEEEEecCC
Confidence                              0000000                            0001223567888887777775542  


Q ss_pred             CCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302          257 DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                      .+.|...++.......+. ..-.....++|++++..|+.+......|..+++.......   ..         .......
T Consensus       144 ~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~---~~---------~~~~~~P  211 (318)
T 3sov_A          144 VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA---VV---------KGSLPHP  211 (318)
T ss_dssp             SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EE---------CSCCSCE
T ss_pred             CCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEE---Ee---------cCCCCCc
Confidence            567888887644333222 2334568999999999888887777788888775431100   00         0011245


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      ..+++.  +..|..+  +...   +.|..++..++..
T Consensus       212 ~glav~--~~~lywt--d~~~---~~V~~~~~~~G~~  241 (318)
T 3sov_A          212 FALTLF--EDILYWT--DWST---HSILACNKYTGEG  241 (318)
T ss_dssp             EEEEEE--TTEEEEE--ETTT---TEEEEEETTTCCS
T ss_pred             eEEEEe--CCEEEEE--ecCC---CeEEEEECCCCCc
Confidence            677775  3455554  3322   5688888866654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.77  E-value=0.31  Score=44.34  Aligned_cols=59  Identities=3%  Similarity=0.001  Sum_probs=35.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCccee---eccCCcCCeeEEEEccC---CCceEEEe
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI---LTSDSQRDVKVLEWRPN---GGRSLSVG  162 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~---~~~~~~~~v~~l~~sp~---~~~~la~g  162 (427)
                      .-..|+|.|+|++++ +..++.|++++  .+......   ...........|+|+|+   +..++++-
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~   96 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR   96 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence            357899999998554 45679998877  33111111   11122356889999998   43554443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.73  E-value=0.021  Score=57.48  Aligned_cols=206  Identities=7%  Similarity=-0.024  Sum_probs=106.8

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCC--CCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDS--GKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~--~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~  176 (427)
                      .+.+|+|++.+..|..+ ...+.|+.+++...  ......+..........|++.+.+..++.+- ..+.|.+.+++   
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~d---  483 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK---  483 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSS---
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecC---
Confidence            56789999987766655 34578888887751  0111111111122355678876554555543 33777777765   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                                          +.....+  +..                          .......++++|.+.+|+.+..
T Consensus       484 --------------------g~~~~~l--~~~--------------------------~~~~P~giavDp~~g~ly~td~  515 (699)
T 1n7d_A          484 --------------------GVKRKTL--FRE--------------------------QGSKPRAIVVDPVHGFMYWTDW  515 (699)
T ss_dssp             --------------------SCCEEEE--CCC--------------------------SSCCCCCEECCSSSSCCEECCC
T ss_pred             --------------------CCceEEE--EeC--------------------------CCCCcceEEEccCCCcEEEccc
Confidence                                0000000  000                          0112335566776555553332


Q ss_pred             --CCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCC
Q 014302          257 --DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  333 (427)
Q Consensus       257 --dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (427)
                        .+.|.++++.......+. ..-.....++|+|++..|+++......|..+++......    .. +...     ..-.
T Consensus       516 ~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~----~~-~~~~-----~~~~  585 (699)
T 1n7d_A          516 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK----TI-LEDE-----KRLA  585 (699)
T ss_dssp             SSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE----EE-CCCS-----SSCS
T ss_pred             CCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE----EE-EecC-----CcCC
Confidence              256777776543332222 223456789999998888887776667877776542110    00 0000     0001


Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS  374 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~  374 (427)
                      ....|++..  ..|.++  +...   +.|..++..++..+.
T Consensus       586 ~P~glavd~--~~lywt--d~~~---~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          586 HPFSLAVFE--DKVFWT--DIIN---EAIFSANRLTGSDVN  619 (699)
T ss_dssp             SCCCCEEET--TEEEEE--CSTT---TCEEEEETTTEEEEE
T ss_pred             CceEeEEEC--CEEEEE--eCCC---CeEEEEEccCCCceE
Confidence            334555544  355554  3322   458888876665543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.64  E-value=0.43  Score=44.28  Aligned_cols=158  Identities=8%  Similarity=0.011  Sum_probs=95.9

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCCC--CcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~  176 (427)
                      .+.+|+|++.+..|... ...+.|+.++++...  .....+..........+++.+.+..++.+-. .+.|.+.+++   
T Consensus       113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~---  189 (400)
T 3p5b_L          113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK---  189 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT---
T ss_pred             cceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC---
Confidence            67899999977766555 456888888876521  1122333323345778888875545555543 3667666664   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                                          +.....                            .+.........++++|.+.+|+....
T Consensus       190 --------------------g~~~~~----------------------------l~~~~~~~P~~iavdp~~g~ly~td~  221 (400)
T 3p5b_L          190 --------------------GVKRKT----------------------------LFRENGSKPRAIVVDPVHGFMYWTDW  221 (400)
T ss_dssp             --------------------TCSEEE----------------------------EEECSSCCEEEEEEETTTTEEEEEEC
T ss_pred             --------------------CCceEE----------------------------EEeCCCCCcceEEEecccCeEEEEeC
Confidence                                000000                            01111224567888887777775442


Q ss_pred             --CCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          257 --DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       257 --dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                        .+.|...++.......+. ..-.....+++++++..|+.+......|..+++..
T Consensus       222 ~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          222 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             SSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence              367888888654443333 33356789999999999988877667788877654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.63  E-value=0.052  Score=46.30  Aligned_cols=153  Identities=11%  Similarity=-0.003  Sum_probs=83.7

Q ss_pred             CeEEEEEccCCCEEEEEecC--CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          238 GLSILKWSPTGDYFFAAKFD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      ....+.|++ +....+.+.+  ..|+.+|+.+++.................+++..|......++.+.+++..+...   
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~---   97 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTP---   97 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEE---
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcE---
Confidence            355788875 4433465654  4899999999987544433333333323334667776667777777777665311   


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  395 (427)
                                ...+...+.-..++  ++++.|.++  .++    +.|.++|.++.+.......+.  ..........+.+
T Consensus        98 ----------~~ti~~~~~Gwglt--~dg~~L~vS--dgs----~~l~~iDp~t~~~~~~I~V~~--~g~~~~~lNeLe~  157 (243)
T 3mbr_X           98 ----------RARFRYPGEGWALT--SDDSHLYMS--DGT----AVIRKLDPDTLQQVGSIKVTA--GGRPLDNLNELEW  157 (243)
T ss_dssp             ----------EEEEECSSCCCEEE--ECSSCEEEE--CSS----SEEEEECTTTCCEEEEEECEE--TTEECCCEEEEEE
T ss_pred             ----------EEEEeCCCCceEEe--eCCCEEEEE--CCC----CeEEEEeCCCCeEEEEEEEcc--CCcccccceeeEE
Confidence                      11111111224444  567777774  333    459999999887764433321  1101111122333


Q ss_pred             ccCCCCCceeEEEeeCceEEEEe
Q 014302          396 HDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       396 ~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .    +|.+.+..|.+..|..++
T Consensus       158 ~----~G~lyanvw~s~~I~vID  176 (243)
T 3mbr_X          158 V----NGELLANVWLTSRIARID  176 (243)
T ss_dssp             E----TTEEEEEETTTTEEEEEC
T ss_pred             e----CCEEEEEECCCCeEEEEE
Confidence            2    366777777776666655

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=96.46  E-value=0.074  Score=47.47  Aligned_cols=187  Identities=10%  Similarity=0.002  Sum_probs=95.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .+.++...+++. |..++.++.+..+|.. +  ............+.++...+++ .+++++  +++..++..       
T Consensus       138 ~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g--~~~~~~~~~~~~~~~~~~d~~g-~l~v~t--~~l~~~d~~-------  203 (330)
T 3hxj_A          138 IYATPIVSEDGT-IYVGSNDNYLYAINPD-G--TEKWRFKTNDAITSAASIGKDG-TIYFGS--DKVYAINPD-------  203 (330)
T ss_dssp             CCSCCEECTTSC-EEEECTTSEEEEECTT-S--CEEEEEECSSCCCSCCEECTTC-CEEEES--SSEEEECTT-------
T ss_pred             eeeeeEEcCCCE-EEEEcCCCEEEEECCC-C--CEeEEEecCCCceeeeEEcCCC-EEEEEe--CEEEEECCC-------
Confidence            355666777776 4456677888888876 3  2222222233456777777777 455444  778888832       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                         +              .  ......                          .....+.++...++|. |..++.++.|
T Consensus       204 ---g--------------~--~~~~~~--------------------------~~~~~~~~~~~~~~g~-l~v~t~~~gl  237 (330)
T 3hxj_A          204 ---G--------------T--EKWNFY--------------------------AGYWTVTRPAISEDGT-IYVTSLDGHL  237 (330)
T ss_dssp             ---S--------------C--EEEEEC--------------------------CSSCCCSCCEECTTSC-EEEEETTTEE
T ss_pred             ---C--------------c--EEEEEc--------------------------cCCcceeceEECCCCe-EEEEcCCCeE
Confidence               1              0  000000                          0112345556666664 5556667778


Q ss_pred             EEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEE
Q 014302          261 YLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAW  340 (427)
Q Consensus       261 ~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  340 (427)
                      ..+|........+......+.++...++|...+ ++.+ +.+..++. +.  .....          .......+.++..
T Consensus       238 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v-~t~~-ggl~~~d~-~g--~~~~~----------~~~~~~~~~~~~~  302 (330)
T 3hxj_A          238 YAINPDGTEKWRFKTGKRIESSPVIGNTDTIYF-GSYD-GHLYAINP-DG--TEKWN----------FETGSWIIATPVI  302 (330)
T ss_dssp             EEECTTSCEEEEEECSSCCCSCCEECTTSCEEE-ECTT-CEEEEECT-TS--CEEEE----------EECSSCCCSCCEE
T ss_pred             EEECCCCCEeEEeeCCCCccccceEcCCCeEEE-ecCC-CCEEEECC-CC--cEEEE----------EEcCCccccceEE
Confidence            888643222222222333344566666776544 4443 35555542 21  11000          0011235677788


Q ss_pred             CCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          341 DASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       341 sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      +++|+..+.    +.+   |.+++...+.
T Consensus       303 d~~g~l~~g----t~~---G~~~~~~~~~  324 (330)
T 3hxj_A          303 DENGTIYFG----TRN---GKFYALFNLE  324 (330)
T ss_dssp             CTTCCEEEE----CTT---SCEEEEEC--
T ss_pred             cCCCEEEEE----cCC---CeEEEEeccc
Confidence            888876654    333   5577766543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.46  E-value=0.088  Score=52.71  Aligned_cols=52  Identities=15%  Similarity=0.203  Sum_probs=35.1

Q ss_pred             CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          258 GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      |.|..||+.+++..-...+...+....++.++..++++ ..++.++.++..+.
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG  508 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQG-TADGRLVAYHAATG  508 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTC
T ss_pred             cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEE-CCCCcEEEEECCCC
Confidence            77999999888764333333444455566677777776 55668888887765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.44  E-value=0.41  Score=44.20  Aligned_cols=162  Identities=10%  Similarity=0.050  Sum_probs=92.6

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCC---cCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccC
Q 014302          108 HQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDS---QRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG  184 (427)
Q Consensus       108 sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~  184 (427)
                      +.+|..|+++ .++.||.-++.... ....+...+   -..|..+..||+| .+||.-+..+|.|-.+..+.......  
T Consensus        29 ~~n~t~i~~a-~~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG-~lLAl~g~~~V~Vv~LP~~~~~~~~~--  103 (452)
T 3pbp_A           29 SQNGTRIVFI-QDNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSG-DLLCLFNDNEIFVMEVPWGYSNVEDV--  103 (452)
T ss_dssp             ETTTTEEEEE-ETTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTS-SEEEEECSSEEEEEECCTTCSCCCCH--
T ss_pred             EcCCCEEEEE-ECCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCC-CEEEEecCCeEEEEEecCccccCccc--
Confidence            4566666666 35788876766442 222232321   2367889999999 89999889999998875110000000  


Q ss_pred             cccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccC---CCEEEEEecCCcEE
Q 014302          185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPT---GDYFFAAKFDGTFY  261 (427)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~dg~v~  261 (427)
                                          ..    ...+.+-.|.-+.       .......+|..+.|+|-   +..|++-..|+.||
T Consensus       104 --------------------~~----~~~~q~~ty~l~~-------~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir  152 (452)
T 3pbp_A          104 --------------------SI----QDAFQIFHYSIDE-------EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTIT  152 (452)
T ss_dssp             --------------------HH----HHTTEEEEEEGGG-------CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEE
T ss_pred             --------------------cc----ccccceeEEEcCC-------cccCCCCceeEEEeccccCCCCeEEEEecCCEEE
Confidence                                00    0001111111000       00002356778888874   45899889999999


Q ss_pred             EEEcCCCCcccc-c----------cCCCCeeEEEECCCCCEEEEEE-cCCceeeee
Q 014302          262 LWETNTWTSEPW-S----------STSGFVTGATWDPEGRMILLAF-AGSLTLGSI  305 (427)
Q Consensus       262 iwd~~~~~~~~~-~----------~~~~~v~~v~~spdg~~l~~~~-~~~~~i~~~  305 (427)
                      +||+......+. .          .....+.+++|..++-.|.... .++|.|+.+
T Consensus       153 ~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          153 MFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            999986332111 0          2236788999999887666533 244456555

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.40  E-value=0.13  Score=46.01  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=44.0

Q ss_pred             eEEEEEccCCCEEEEEecC-CcEEEEEcCCCCccccc------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302          239 LSILKWSPTGDYFFAAKFD-GTFYLWETNTWTSEPWS------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFA  308 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~d-g~v~iwd~~~~~~~~~~------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~  308 (427)
                      ...++..++|+..++++.. +.|..++........+.      ........++++|+|+.|+.... .+.|..+++.
T Consensus       139 ~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~  214 (334)
T 2p9w_A          139 VVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS  214 (334)
T ss_dssp             EEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred             CceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence            5566677777766666666 55555554433222111      12234678999999999988766 7788888876

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.38  E-value=0.29  Score=46.54  Aligned_cols=126  Identities=10%  Similarity=0.028  Sum_probs=70.1

Q ss_pred             CeEEEEE-------ccCCCEEEEEecCC-------cEEEEEcCC-CCcc-----ccccCCCCeeEEEECCCCCEEEEEEc
Q 014302          238 GLSILKW-------SPTGDYFFAAKFDG-------TFYLWETNT-WTSE-----PWSSTSGFVTGATWDPEGRMILLAFA  297 (427)
Q Consensus       238 ~v~~~~~-------sp~g~~l~~~~~dg-------~v~iwd~~~-~~~~-----~~~~~~~~v~~v~~spdg~~l~~~~~  297 (427)
                      ....++|       +++|++|+++...+       .|.+++... +...     ...........++.+|++..|+++..
T Consensus       187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~  266 (496)
T 3kya_A          187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSY  266 (496)
T ss_dssp             BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEET
T ss_pred             CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEEC
Confidence            4677889       99999777665543       255665333 1211     11112234567889997777777777


Q ss_pred             CCceeeeeeeC-------CCCCCcccccccc-ccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          298 GSLTLGSIHFA-------SKPPSLDAHLLPV-DLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       298 ~~~~i~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      ..+.++.+++.       ............. .+..............|+|+|+|++|.++  +...   +.|+.++..
T Consensus       267 ~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYva--D~~~---h~I~kid~d  340 (496)
T 3kya_A          267 EKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFG--VINN---HYFMRSDYD  340 (496)
T ss_dssp             TTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEE--ETTT---TEEEEEEEE
T ss_pred             CCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEE--eCCC---CEEEEEecC
Confidence            77788888876       3321000000000 00001111122356899999999976665  3333   458886654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.30  E-value=0.62  Score=42.34  Aligned_cols=58  Identities=5%  Similarity=-0.042  Sum_probs=35.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee---ccCCcCCeeEEEEccC---CCceEEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL---TSDSQRDVKVLEWRPN---GGRSLSV  161 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~v~~l~~sp~---~~~~la~  161 (427)
                      ....|+|.|+|++++ +..++.|++++- .+ ......   ..........|+|+|+   +..++++
T Consensus        30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~   93 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLV-TERPGRLVLISP-SG-KKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY   93 (354)
T ss_dssp             CEEEEEEEETTEEEE-EETTTEEEEECS-SC-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CCeEEEEcCCCeEEE-EeCCCEEEEEeC-CC-ceEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence            357899999998554 456799888752 22 111111   1122356889999998   4355544

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.27  E-value=0.33  Score=44.30  Aligned_cols=60  Identities=15%  Similarity=0.020  Sum_probs=34.0

Q ss_pred             CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302          110 HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus       110 ~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      ++..|.+++.++.+..+|..++.  ..-............... ++ .+++...++.+..+|..
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~--~~W~~~~~~~~~~~p~~~-~~-~v~v~~~~g~l~~~d~~  161 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGT--VAWQTKVAGEALSRPVVS-DG-LVLIHTSNGQLQALNEA  161 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCC--EEEEEECSSCCCSCCEEE-TT-EEEEECTTSEEEEEETT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCC--EEEEEeCCCceEcCCEEE-CC-EEEEEcCCCeEEEEECC
Confidence            35577778889999999887762  211111111111112222 44 56665666888888875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.19  E-value=1.1  Score=44.21  Aligned_cols=224  Identities=11%  Similarity=0.068  Sum_probs=129.0

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccccCcccccc
Q 014302          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVRSGAASFLG  190 (427)
Q Consensus       112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~~~~~~~~~  190 (427)
                      .+|+.+ ....|+..+++...... .+....-..+..|+|.+.+..++.+-.. +.|..++++                 
T Consensus         7 ~~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~-----------------   67 (628)
T 4a0p_A            7 AFLLFS-RRADIRRISLETNNNNV-AIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN-----------------   67 (628)
T ss_dssp             CEEEEE-ETTEEEEEESSCTTCEE-ECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-----------------
T ss_pred             cEEEEE-eCCcEEEEECCCCCcce-EEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC-----------------
Confidence            355555 46688888887652211 1112223467899999987566665543 777766665                 


Q ss_pred             cccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCC
Q 014302          191 ALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWT  269 (427)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~  269 (427)
                            +.....+                            +.........+++.+.+..|+ +-...+.|.+.++....
T Consensus        68 ------g~~~~~v----------------------------~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~  113 (628)
T 4a0p_A           68 ------GSALEHV----------------------------VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH  113 (628)
T ss_dssp             ------SCSCEEE----------------------------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred             ------CCCcEEE----------------------------EeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence                  0000000                            000112345677877777676 54556788898886554


Q ss_pred             ccccc-cCCCCeeEEEECCCCCEEEEEEcC-CceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEE
Q 014302          270 SEPWS-STSGFVTGATWDPEGRMILLAFAG-SLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERL  347 (427)
Q Consensus       270 ~~~~~-~~~~~v~~v~~spdg~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~L  347 (427)
                      ...+. ..-.....+++.|...+|+.+... ...|....+......             .....-.....|+++++++.|
T Consensus       114 ~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-------------~l~~~~~~P~GlalD~~~~~L  180 (628)
T 4a0p_A          114 RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-------------TLVPNVGRANGLTIDYAKRRL  180 (628)
T ss_dssp             CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-------------EEECSCSSEEEEEEETTTTEE
T ss_pred             EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-------------EEECCCCCcceEEEccccCEE
Confidence            33332 344557899999976677766533 345666555443110             001122367899999998888


Q ss_pred             EEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          348 AVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       348 a~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .++  +...   +.|..+++...... +.     ..  ....|..+++..    +.+...-|..+.|..++
T Consensus       181 Y~a--D~~~---~~I~~~d~dG~~~~-v~-----~~--~l~~P~glav~~----~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          181 YWT--DLDT---NLIESSNMLGLNRE-VI-----AD--DLPHPFGLTQYQ----DYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             EEE--ETTT---TEEEEEETTSCSCE-EE-----EE--CCSCEEEEEEET----TEEEEEETTTTEEEEEE
T ss_pred             EEE--ECCC---CEEEEEcCCCCceE-Ee-----ec--cCCCceEEEEEC----CEEEEecCCCCEEEEEE
Confidence            886  3333   46999998664432 21     11  112356666643    45666667777777766

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.15  E-value=0.7  Score=42.09  Aligned_cols=137  Identities=14%  Similarity=0.169  Sum_probs=71.4

Q ss_pred             CCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccce
Q 014302          248 GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIV  327 (427)
Q Consensus       248 g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  327 (427)
                      +..++.++.++.+..+|.++++.. +.........+..  ++..+++++. ++.+..++..+..........        
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~-w~~~~~~~~~~~~--~~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~~--------  306 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIM-WKRELGSVNDFIV--DGNRIYLVDQ-NDRVMALTIDGGVTLWTQSDL--------  306 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEE-EEECCCCEEEEEE--ETTEEEEEET-TCCEEEEETTTCCEEEEECTT--------
T ss_pred             CCEEEEEecCcEEEEEECCCCcEE-eeccCCCCCCceE--ECCEEEEEcC-CCeEEEEECCCCcEEEeeccc--------
Confidence            456777788999999999887753 2212223334443  3555655544 346666666554211110000        


Q ss_pred             eeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEE
Q 014302          328 SLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSV  407 (427)
Q Consensus       328 ~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v  407 (427)
                         ....+..+..  .+..|.+   ++.+   |.|+++|.++++.+......   +......+.   .     .+..|-+
T Consensus       307 ---~~~~~~~~~~--~~~~l~v---~~~~---g~l~~~d~~tG~~~~~~~~~---~~~~~~~~~---~-----~~~~l~v  364 (376)
T 3q7m_A          307 ---LHRLLTSPVL--YNGNLVV---GDSE---GYLHWINVEDGRFVAQQKVD---SSGFQTEPV---A-----ADGKLLI  364 (376)
T ss_dssp             ---TTSCCCCCEE--ETTEEEE---ECTT---SEEEEEETTTCCEEEEEECC---TTCBCSCCE---E-----ETTEEEE
T ss_pred             ---CCCcccCCEE--ECCEEEE---EeCC---CeEEEEECCCCcEEEEEecC---CCcceeCCE---E-----ECCEEEE
Confidence               0001122222  2456655   4444   67999999998875332210   001111111   1     1335778


Q ss_pred             EeeCceEEEEe
Q 014302          408 CWSSGFCCTYP  418 (427)
Q Consensus       408 ~~~~g~i~~~~  418 (427)
                      +..+|.|..|+
T Consensus       365 ~~~~G~l~~~~  375 (376)
T 3q7m_A          365 QAKDGTVYSIT  375 (376)
T ss_dssp             EBTTSCEEEEE
T ss_pred             EeCCCEEEEEe
Confidence            88899998875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.06  E-value=1.3  Score=43.75  Aligned_cols=198  Identities=7%  Similarity=-0.013  Sum_probs=116.1

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .+.+|+|++.+..|..+ ..++.|+.++++..  ....+..........+++.+.+.+++.+-.. +.|.+.+++     
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~--~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-----  110 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGS--ALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD-----  110 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC--SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-----
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCC--CcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC-----
Confidence            57899999977766554 45788888887654  2222222222356778888776566555443 667777665     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec--
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF--  256 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~--  256 (427)
                                        +.....+                            +.........+++.|...+|+....  
T Consensus       111 ------------------G~~~~~l----------------------------~~~~l~~P~~iavdp~~G~lY~tD~g~  144 (628)
T 4a0p_A          111 ------------------GQHRQVL----------------------------VWKDLDSPRALALDPAEGFMYWTEWGG  144 (628)
T ss_dssp             ------------------STTCEEE----------------------------ECSSCCCEEEEEEETTTTEEEEEECSS
T ss_pred             ------------------CCcEEEE----------------------------EeCCCCCcccEEEccCCCeEEEeCCCC
Confidence                              0000000                            0001123567888887667775442  


Q ss_pred             CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCcee
Q 014302          257 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE  336 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  336 (427)
                      .+.|...++.......+.........+++++++..|+.+......|..+++......+    .         ........
T Consensus       145 ~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v----~---------~~~l~~P~  211 (628)
T 4a0p_A          145 KPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREV----I---------ADDLPHPF  211 (628)
T ss_dssp             SCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----E---------EECCSCEE
T ss_pred             CCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEE----e---------eccCCCce
Confidence            4677777776555444444556788999999999998887777788888775532111    0         00112445


Q ss_pred             EEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                      .|++..  ..|..+  +...   +.|...|..++.
T Consensus       212 glav~~--~~ly~t--D~~~---~~I~~~dk~tg~  239 (628)
T 4a0p_A          212 GLTQYQ--DYIYWT--DWSR---RSIERANKTSGQ  239 (628)
T ss_dssp             EEEEET--TEEEEE--ETTT---TEEEEEETTTCC
T ss_pred             EEEEEC--CEEEEe--cCCC---CEEEEEECCCCC
Confidence            677654  355553  3322   457777765543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.06  E-value=0.35  Score=45.42  Aligned_cols=72  Identities=13%  Similarity=0.043  Sum_probs=42.5

Q ss_pred             eeeeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEecc
Q 014302          102 LQGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPS  173 (427)
Q Consensus       102 V~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~  173 (427)
                      ...++++| +|.+.++-..++.|+.++...+.........+....-..++|+|++..++++-. .+.|..++.+
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            46788999 666555555678888877664411011111222222346999999953544443 3777777765

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.04  E-value=0.076  Score=53.30  Aligned_cols=85  Identities=9%  Similarity=0.156  Sum_probs=47.3

Q ss_pred             CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCcee
Q 014302          257 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE  336 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  336 (427)
                      +|.|+.||+.+++..-...+........++..+..++++ ..++.++.++..+.+...+.           .+..+....
T Consensus       454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~lw~~-----------~~~~~~~~~  521 (689)
T 1yiq_A          454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEKLWEQ-----------PAASGVMAA  521 (689)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEE-----------ECSSCCCSC
T ss_pred             ceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEE-CCCCcEEEEECCCCccceee-----------eCCCCcccC
Confidence            377999999988763322222333333555567777766 55668888887765321100           000111223


Q ss_pred             EEEECCCCCEEEEEEec
Q 014302          337 KIAWDASGERLAVSYKG  353 (427)
Q Consensus       337 ~v~~sp~g~~La~~~~~  353 (427)
                      -+.|..+|+..++...|
T Consensus       522 p~ty~~~G~qyv~~~~G  538 (689)
T 1yiq_A          522 PVTYSVDGEQYVTFMAG  538 (689)
T ss_dssp             CEEEEETTEEEEEEEEC
T ss_pred             ceEEEECCEEEEEEEec
Confidence            46777888866654444

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.04  E-value=0.29  Score=40.88  Aligned_cols=148  Identities=12%  Similarity=0.158  Sum_probs=80.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcc-------eeecc-CCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA-------CILTS-DSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~-------~~~~~-~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~  172 (427)
                      .++.++|+|+|.+.|+  .+|.  ||..+......       ..+-. +-. ...++.|.|+| .+.++ .++.|.-++-
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G-~LYav-~dG~iyr~~p  114 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNG-YLYAV-SKDKLYKASP  114 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTE--EEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTS-CEEEE-ETTEEEEESC
T ss_pred             cceeEEECCCccEEEE--eCCe--EEEECCCCCCcccccccccEecccccc-cceEEEECCCC-CEEEe-CCCEEEEeCC
Confidence            5679999999997777  5666  45454431111       11101 111 14789999999 67777 6676654442


Q ss_pred             cCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEe-ccCCeEEEEEccCCCEE
Q 014302          173 SYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRR-GFGGLSILKWSPTGDYF  251 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~-~~~~v~~~~~sp~g~~l  251 (427)
                      .  .+                                           -+..++..+..+-. .-..+..+.+.|+|...
T Consensus       115 P--~~-------------------------------------------~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly  149 (236)
T 1tl2_A          115 P--QS-------------------------------------------DTDNWIARATEVGSGGWSGFKFLFFHPNGYLY  149 (236)
T ss_dssp             C--CS-------------------------------------------TTCCHHHHSEEEECSSGGGEEEEEECTTSCEE
T ss_pred             C--cC-------------------------------------------CCCceeccccEeccCCCCceEEEEECCCceEE
Confidence            1  00                                           01122222222222 23567889999999877


Q ss_pred             EEEecCCcEEEEEcCCCCccccc--------cCCCCeeEEEECCCCCEEEEEEcCCceeeee
Q 014302          252 FAAKFDGTFYLWETNTWTSEPWS--------STSGFVTGATWDPEGRMILLAFAGSLTLGSI  305 (427)
Q Consensus       252 ~~~~~dg~v~iwd~~~~~~~~~~--------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~  305 (427)
                      ++.  |+.++-+...+.....+.        ..-....-+.|.++|...++.   ++.++..
T Consensus       150 av~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~---~g~~Y~~  206 (236)
T 1tl2_A          150 AVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ---GGKFYED  206 (236)
T ss_dssp             EEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE---TTEEEEE
T ss_pred             EEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe---CCeEEec
Confidence            766  777554433333322222        111233456799999887754   3344443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.01  E-value=0.86  Score=41.36  Aligned_cols=61  Identities=7%  Similarity=-0.028  Sum_probs=36.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCccee----eccCCcCCeeEEEEccC---CCceEEE
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI----LTSDSQRDVKVLEWRPN---GGRSLSV  161 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~----~~~~~~~~v~~l~~sp~---~~~~la~  161 (427)
                      ....|+|.|+|++|.++...+.|++++.+........    ...........++|+|+   +..++++
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence            3578999999984445567899988764322100000    11122346789999996   3344444

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.00  E-value=1.6  Score=44.34  Aligned_cols=233  Identities=12%  Similarity=0.061  Sum_probs=124.6

Q ss_pred             CCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee------------ccCCcCCeeEEEEccCCCceEEEecCC
Q 014302           98 PEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL------------TSDSQRDVKVLEWRPNGGRSLSVGCKG  165 (427)
Q Consensus        98 ~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~------------~~~~~~~v~~l~~sp~~~~~la~g~~~  165 (427)
                      ....|.++...++|.+. .|+..+-+.+++...........            ..-....|.++...++| .+-+...++
T Consensus       256 ~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g-~lWigt~~~  333 (781)
T 3v9f_A          256 LSSYIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN-NIWIGTWGG  333 (781)
T ss_dssp             CCCCEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC-CEEEEEBSS
T ss_pred             cCceEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC-CEEEEecCC
Confidence            34478999988888744 35554556677766541111100            01134568899888887 555555567


Q ss_pred             eEEEEeccCCCCccccccCcccccccccCCCCcceeEeeh------hcccCCCceeeeEeCCCCCC-ccc--Cce-----
Q 014302          166 GICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDF------LRSQNGEQITALSWGPDGRF-PGL--GTP-----  231 (427)
Q Consensus       166 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~spdg~~-l~~--~~~-----  231 (427)
                      +|..++.....                       +.....      ...-....|.++...++|.+ +++  +..     
T Consensus       334 Gl~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~  390 (781)
T 3v9f_A          334 GINFISNAPPT-----------------------FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFEN  390 (781)
T ss_dssp             CEEEECSSCCS-----------------------CEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEET
T ss_pred             eEEEeCCCCCc-----------------------ceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEEC
Confidence            88888765110                       000000      00001234555655555543 221  000     


Q ss_pred             ----EE-------eccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEc
Q 014302          232 ----IR-------RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFA  297 (427)
Q Consensus       232 ----~~-------~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~  297 (427)
                          +.       .....|.++...++|.. ..|+.++.|..+|.++++...+.   .....|.++...++|...+ ++.
T Consensus       391 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~  468 (781)
T 3v9f_A          391 GKRVAIYNKENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH  468 (781)
T ss_dssp             TEEEEECC-----CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET
T ss_pred             CCCeEEEccCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC
Confidence                11       12245778887777764 44666677889988766543332   2346788999888887665 444


Q ss_pred             CCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          298 GSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       298 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                       . -+..++.....  +..... ..   ... .....|.++..+++|...+.+.  +.    | |..|+..++...
T Consensus       469 -~-Gl~~~~~~~~~--~~~~~~-~~---~~~-~~~~~i~~i~~d~~g~lWigt~--~~----G-l~~~~~~~~~~~  528 (781)
T 3v9f_A          469 -A-GVFVIDLASKK--VIHHYD-TS---NSQ-LLENFVRSIAQDSEGRFWIGTF--GG----G-VGIYTPDMQLVR  528 (781)
T ss_dssp             -T-EEEEEESSSSS--CCEEEC-TT---TSS-CSCSCEEEEEECTTCCEEEEES--SS----C-EEEECTTCCEEE
T ss_pred             -C-ceEEEeCCCCe--EEeccc-Cc---ccc-cccceeEEEEEcCCCCEEEEEc--CC----C-EEEEeCCCCeEE
Confidence             3 35555543321  110000 00   000 0124789999999998776642  11    1 778887665543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.99  E-value=0.81  Score=40.83  Aligned_cols=118  Identities=15%  Similarity=0.126  Sum_probs=69.7

Q ss_pred             eEEEEE---ccCCCEEEEEe-------------cCCcEEEEEcC---CCCccccc-------c-------CCCCeeEEEE
Q 014302          239 LSILKW---SPTGDYFFAAK-------------FDGTFYLWETN---TWTSEPWS-------S-------TSGFVTGATW  285 (427)
Q Consensus       239 v~~~~~---sp~g~~l~~~~-------------~dg~v~iwd~~---~~~~~~~~-------~-------~~~~v~~v~~  285 (427)
                      +..+.|   .|+++++++..             .+..|..||+.   +++.....       .       .......++.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            356777   57766666433             26779999998   66553222       1       1235789999


Q ss_pred             CCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEE
Q 014302          286 DPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIY  365 (427)
Q Consensus       286 spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vw  365 (427)
                      .++|+..++.+..-+.|+.++-..+...      ++.+... .....-..+.++++|+|..|++.  .+ .   |.|..+
T Consensus       145 D~~GnaYVt~s~~~~~I~rV~pdG~~~~------~~~~~~~-~~~~~~G~nGIv~~pdg~~Liv~--~~-~---g~L~~f  211 (334)
T 2p9w_A          145 DRDGNSYVAFALGMPAIARVSADGKTVS------TFAWESG-NGGQRPGYSGITFDPHSNKLIAF--GG-P---RALTAF  211 (334)
T ss_dssp             CTTSCEEEEEEESSCEEEEECTTSCCEE------EEEECCC-CSSSCCSCSEEEEETTTTEEEEE--SS-S---SSEEEE
T ss_pred             CCCCCEEEeCCCCCCeEEEEeCCCCEEe------eeeecCC-CcccccCcceEEEeCCCCEEEEE--cC-C---CeEEEE
Confidence            9999988766544135554444332111      0000000 00011146799999999999985  33 3   559999


Q ss_pred             Eecc
Q 014302          366 DARR  369 (427)
Q Consensus       366 d~~~  369 (427)
                      |+..
T Consensus       212 D~~~  215 (334)
T 2p9w_A          212 DVSK  215 (334)
T ss_dssp             ECSS
T ss_pred             cCCC
Confidence            9874

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.78  E-value=0.12  Score=43.14  Aligned_cols=101  Identities=17%  Similarity=0.243  Sum_probs=63.5

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCe--------eEEEECCCCCEEEEEEcCCceeeeeeeC
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--------TGATWDPEGRMILLAFAGSLTLGSIHFA  308 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v--------~~v~~spdg~~l~~~~~~~~~i~~~~~~  308 (427)
                      ..+..++|+|+|.+.++  .+|.++-.+..+.....+......|        .++.|.|+|.+.++  .+ +.|+.++-.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~d-G~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SK-DKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ET-TEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CC-CEEEEeCCC
Confidence            46779999999885556  6787777776665555555334444        78999999988776  33 577766432


Q ss_pred             CCC-CCccccccccccccceeec--cCCceeEEEECCCCCEEEEE
Q 014302          309 SKP-PSLDAHLLPVDLPDIVSLT--GSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       309 ~~~-~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~sp~g~~La~~  350 (427)
                      +.. ...-..        ...+.  +-..+..|.|+|+|...|+.
T Consensus       116 ~~~~~~Wl~~--------a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          116 QSDTDNWIAR--------ATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             CSTTCCHHHH--------SEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             cCCCCceecc--------ccEeccCCCCceEEEEECCCceEEEEe
Confidence            211 011000        00111  11268999999999999883

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.70  E-value=2.1  Score=43.43  Aligned_cols=230  Identities=13%  Similarity=0.084  Sum_probs=123.7

Q ss_pred             CCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec---------cCCcCCeeEEEEccCCCceEEEecCCeE
Q 014302           97 LPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT---------SDSQRDVKVLEWRPNGGRSLSVGCKGGI  167 (427)
Q Consensus        97 l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~---------~~~~~~v~~l~~sp~~~~~la~g~~~~i  167 (427)
                      +....|.++...++|.+- .|+.++-|..++....  ......         .-....|.++...++| .+.+....+++
T Consensus       310 l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lWigt~~~Gl  385 (781)
T 3v9f_A          310 LSNASARYIFQDSFNNIW-IGTWGGGINFISNAPP--TFHTWSYSPTQMNESSLSNKVVSSVCDDGQG-KLWIGTDGGGI  385 (781)
T ss_dssp             BSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCC--SCEEEC----CCCSSCCSSSCEEEEEECTTS-CEEEEEBSSCE
T ss_pred             CCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCC--cceeeccCccccccCCCCCcceEEEEEcCCC-CEEEEeCCCcE
Confidence            344579999999988744 4555666767765544  111111         1123568899888877 55555546778


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-cccC-----------ceEEe-
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-PGLG-----------TPIRR-  234 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~-----------~~~~~-  234 (427)
                      ..|+..         ++              .+.............|.++...++|.+ +++.           ..+.. 
T Consensus       386 ~~~~~~---------~~--------------~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~  442 (781)
T 3v9f_A          386 NVFENG---------KR--------------VAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQII  442 (781)
T ss_dssp             EEEETT---------EE--------------EEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEEC
T ss_pred             EEEECC---------CC--------------eEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEe
Confidence            888865         11              000000000011344555555555543 1110           11111 


Q ss_pred             -----ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccccc------CCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302          235 -----GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSS------TSGFVTGATWDPEGRMILLAFAGSLTLG  303 (427)
Q Consensus       235 -----~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~------~~~~v~~v~~spdg~~l~~~~~~~~~i~  303 (427)
                           ....|.++...++|+ |..|+. +.|..||..+.+...+..      ....|.++...++|+..+. +.+.+ +.
T Consensus       443 ~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~G-l~  518 (781)
T 3v9f_A          443 ELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGG-VG  518 (781)
T ss_dssp             CSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSC-EE
T ss_pred             ccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCC-EE
Confidence                 124577888877776 444554 668899987765433321      1467889999999987764 44332 33


Q ss_pred             eeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          304 SIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      .++....  .+..    ..  ....+ ....|.++..+++|...+.+  .  .   |.|..||.+++...
T Consensus       519 ~~~~~~~--~~~~----~~--~~~~l-~~~~i~~i~~d~~g~lWi~T--~--~---Glv~~~d~~~~~~~  572 (781)
T 3v9f_A          519 IYTPDMQ--LVRK----FN--QYEGF-CSNTINQIYRSSKGQMWLAT--G--E---GLVCFPSARNFDYQ  572 (781)
T ss_dssp             EECTTCC--EEEE----EC--TTTTC-SCSCEEEEEECTTSCEEEEE--T--T---EEEEESCTTTCCCE
T ss_pred             EEeCCCC--eEEE----cc--CCCCC-CCCeeEEEEECCCCCEEEEE--C--C---CceEEECCCCCcEE
Confidence            3332221  1100    00  00000 12368999999999877663  2  2   44488888776644

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.67  E-value=0.75  Score=40.75  Aligned_cols=105  Identities=12%  Similarity=0.193  Sum_probs=57.9

Q ss_pred             EEccCCCEEEEEec-CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCccccccc
Q 014302          243 KWSPTGDYFFAAKF-DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       243 ~~sp~g~~l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      +++++++.|+-.+. ...|.+.++.......+..  +.... .++|++.+|+.....+ ..|...++.....        
T Consensus       151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~~-~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~--------  219 (302)
T 3s25_A          151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCYK-PVVLDDTNVYYMDVNRDNAIVHVNINNPNP--------  219 (302)
T ss_dssp             CSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEEE-EEEEETTEEEEEEGGGTTEEEEECSSSCCC--------
T ss_pred             EeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCccc-eeeecCCEEEEEEcCCCcEEEEEECCCCCe--------
Confidence            45778888884443 5667777776555433322  22222 3559999999876544 3566665554311        


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP  371 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~  371 (427)
                            ..+. ...+  ..|+|++++|..+..+..    ..|..-++....
T Consensus       220 ------~~Lt-~~~~--~~~~~~g~~Iy~~~~~~~----~~i~~~~~DG~~  257 (302)
T 3s25_A          220 ------VVLT-EANI--EHYNVYGSLIFYQRGGDN----PALCVVKNDGTG  257 (302)
T ss_dssp             ------EECS-CSCE--EEEEEETTEEEEEECSSS----CEEEEEETTSCC
T ss_pred             ------EEEe-CCCc--ceEEECCCEEEEEECCCC----cEEEEEECCCCc
Confidence                  0111 1122  347888999876422222    346666665433

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.62  E-value=0.28  Score=44.65  Aligned_cols=111  Identities=14%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc-------ccCCCCeeEEEECCC---CCEEEEEEcC-------C
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-------SSTSGFVTGATWDPE---GRMILLAFAG-------S  299 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-------~~~~~~v~~v~~spd---g~~l~~~~~~-------~  299 (427)
                      ...+.|+|.|+|++|+++...|.|++++........+       .........++|+|+   +..|+++...       .
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            4567899999998455556689999998532211111       123456789999996   5555544332       2


Q ss_pred             ceeeeeeeCCCCCCcccccccc-ccccceeeccCCceeEEEECCCCCEEEE
Q 014302          300 LTLGSIHFASKPPSLDAHLLPV-DLPDIVSLTGSQGIEKIAWDASGERLAV  349 (427)
Q Consensus       300 ~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~La~  349 (427)
                      ..|..+.+......+......+ .++......|  ....|+|+|||.++++
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h--~~~~l~~~pdG~Lyv~  146 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNH--FGGRLVFDGKGYLFIA  146 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSC--CCCCEEECSSSEEEEE
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcc--cCccEEECCCCcEEEE
Confidence            2455555543222221111000 0110000011  2467999999955544

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.18  E-value=1.6  Score=38.66  Aligned_cols=63  Identities=6%  Similarity=0.042  Sum_probs=37.5

Q ss_pred             EccCCCEEEEEecC--CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEc-CCceeeeeeeCCC
Q 014302          244 WSPTGDYFFAAKFD--GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA-GSLTLGSIHFASK  310 (427)
Q Consensus       244 ~sp~g~~l~~~~~d--g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~-~~~~i~~~~~~~~  310 (427)
                      ++|++++|+-....  ..|..-++.......+.  ...+  ..|+|++++|+.+.. ....|..+++...
T Consensus       191 ~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          191 VVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEECSSSCCCEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             eeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            56999999854433  24555555554443333  2223  458899999987643 2346666666553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.03  E-value=1.7  Score=40.88  Aligned_cols=54  Identities=11%  Similarity=0.235  Sum_probs=32.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeecc------CCcCCeeEEEEccC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTS------DSQRDVKVLEWRPN  154 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~------~~~~~v~~l~~sp~  154 (427)
                      ....|+|.|+|+++++-...+.|++++...+.........      ........|+|+|+
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            4579999999987776544457777654333111111111      12456789999995

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.74  E-value=2.3  Score=38.46  Aligned_cols=58  Identities=10%  Similarity=0.058  Sum_probs=37.1

Q ss_pred             CeEEEEE-------ccCCCEEEEEecCCcEEEEEcCCCC-c---cccc-cCCCCeeEEEECCCCCEEEEE
Q 014302          238 GLSILKW-------SPTGDYFFAAKFDGTFYLWETNTWT-S---EPWS-STSGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       238 ~v~~~~~-------sp~g~~l~~~~~dg~v~iwd~~~~~-~---~~~~-~~~~~v~~v~~spdg~~l~~~  295 (427)
                      ....++|       ..+|+++++.-..+.|...++.... .   ..+. .....+..+++.|||..+++.
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            4556677       3567666666666778888876432 1   1222 234578999999999766554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.71  E-value=0.92  Score=41.15  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=34.9

Q ss_pred             eEEEEEccCCCEEEEEecCCcEEEEEcCCCCc-------cccccCCCCeeEEEECCCCCEEEEEE
Q 014302          239 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTS-------EPWSSTSGFVTGATWDPEGRMILLAF  296 (427)
Q Consensus       239 v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~v~~v~~spdg~~l~~~~  296 (427)
                      ...++| .+|..+++.-..+.|...++.....       ..+......+..+++.|||..+++..
T Consensus       270 p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          270 PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            345556 4565555555566777777654331       22223346789999999998776543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.56  E-value=0.38  Score=48.18  Aligned_cols=53  Identities=15%  Similarity=0.197  Sum_probs=37.4

Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCccc-cc-cCCCCeeEEEECCCCCEEEE
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WS-STSGFVTGATWDPEGRMILL  294 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~v~~spdg~~l~~  294 (427)
                      ..+...+..+++++.||.|+.||.++++..- +. .......-+.|+.+|+..+.
T Consensus       480 g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          480 GTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            3566678899999999999999999998742 22 33333345677788875443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.53  E-value=4  Score=40.18  Aligned_cols=157  Identities=9%  Similarity=0.044  Sum_probs=92.6

Q ss_pred             ceeeeEEcCCCCEEEEEe-CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .+.+|+|++.+..|..+. ..+.|..++++......... .........+++.+.+.+++.+-.. +.|.+.+++     
T Consensus        41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~-~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-----  114 (619)
T 3s94_A           41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-----  114 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-----
T ss_pred             ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEE-eCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC-----
Confidence            578999999777666554 46788888876542112222 2222467889999876566655543 778777775     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec--
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF--  256 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~--  256 (427)
                                        +.....+   -                         .........+++.|.+.+|+.+..  
T Consensus       115 ------------------G~~~~~l---~-------------------------~~~l~~P~~Iavdp~~g~ly~tD~g~  148 (619)
T 3s94_A          115 ------------------GSLRKVL---F-------------------------WQELDQPRAIALDPSSGFMYWTDWGE  148 (619)
T ss_dssp             ------------------SCSCEEE---E-------------------------CSSCSCCCCEEEETTTTEEEEEECSS
T ss_pred             ------------------CCCEEEE---E-------------------------eCCCCCCceEEEecCCCeEEEeccCC
Confidence                              0000000   0                         001123456788887666664443  


Q ss_pred             CCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCC
Q 014302          257 DGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~  309 (427)
                      .+.|...++.......+. ..-.....+++++++..|+.+-.....|..+++..
T Consensus       149 ~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG  202 (619)
T 3s94_A          149 VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  202 (619)
T ss_dssp             SCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSC
T ss_pred             CCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCC
Confidence            356666666543333332 33456789999998888888776666777776654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.45  E-value=2.7  Score=37.90  Aligned_cols=54  Identities=7%  Similarity=0.057  Sum_probs=35.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCccee----eccCCcCCeeEEEEccC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI----LTSDSQRDVKVLEWRPN  154 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~----~~~~~~~~v~~l~~sp~  154 (427)
                      .-..|+|.|+|.++++-...|.|++++...+......    ...........|+++|+
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            3578999999997776654899888764433111111    11223557899999996

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=93.92  E-value=5  Score=39.01  Aligned_cols=21  Identities=5%  Similarity=0.040  Sum_probs=16.6

Q ss_pred             CCEEEEEeCCCeEEEEEccCC
Q 014302          111 KHIVAFISGSTQVIVRDYEDS  131 (427)
Q Consensus       111 g~~lat~~~d~~v~vwd~~~~  131 (427)
                      +..|++++.|+.+..+|..++
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG  135 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTG  135 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCEEEEEECCCC
Confidence            557777888899988887776

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=93.44  E-value=6.7  Score=38.94  Aligned_cols=21  Identities=14%  Similarity=-0.001  Sum_probs=17.1

Q ss_pred             CCEEEEEeCCCeEEEEEccCC
Q 014302          111 KHIVAFISGSTQVIVRDYEDS  131 (427)
Q Consensus       111 g~~lat~~~d~~v~vwd~~~~  131 (427)
                      +..|++++.|+.+..+|..++
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG  137 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTG  137 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEcCCCEEEEEECCCC
Confidence            557778888999999888776

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=93.00  E-value=5.6  Score=36.79  Aligned_cols=162  Identities=12%  Similarity=0.044  Sum_probs=88.4

Q ss_pred             EccCCCEEEEEecCCcEEEEEcCCCCccccc--c---CCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302          244 WSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--S---TSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  318 (427)
Q Consensus       244 ~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~---~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  318 (427)
                      ...+|..++..- ++.||.-++......+..  .   .-..+..+..||+|++||..+..  .+.++.+...........
T Consensus        28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~--~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN--EIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS--EEEEEECCTTCSCCCCHH
T ss_pred             EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC--eEEEEEecCccccCcccc
Confidence            345666666554 688888887754332222  2   12367889999999999986433  566777764311111000


Q ss_pred             --ccc-----ccccceeeccCCceeEEEECCC---CCEEEEEEecCCCcceeEEEEEEeccCce--EEE-eeeeeeeCCC
Q 014302          319 --LPV-----DLPDIVSLTGSQGIEKIAWDAS---GERLAVSYKGGDDIYKGLIAIYDARRTPL--ISL-SLIGFIRGPG  385 (427)
Q Consensus       319 --~~~-----~~~~~~~~~~~~~i~~v~~sp~---g~~La~~~~~~~d~~~g~i~vwd~~~~~~--~~~-~~~~~~~~~~  385 (427)
                        .++     .+.... .....+|..+.|+|-   +..|++-..   |   ++|++||+....-  ..+ ...+.+....
T Consensus       105 ~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVLts---D---~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~  177 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVLKE---D---DTITMFDILNSQEKPIVLNKPNNSFGLDA  177 (452)
T ss_dssp             HHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEEET---T---SCEEEEETTCTTSCCEEESCCCSEEESCS
T ss_pred             cccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEEec---C---CEEEEEEcccCCCCCcchhccccccCCCc
Confidence              111     111110 112458999999985   456777422   2   4599999975211  111 1111111111


Q ss_pred             CCCCceeEEeccCCCCCceeEEEe--eCceEEEEe
Q 014302          386 DNPKPVAFSFHDKFKQGPLLSVCW--SSGFCCTYP  418 (427)
Q Consensus       386 ~~~~~~~~~f~~~~~~g~~l~v~~--~~g~i~~~~  418 (427)
                      ....+.+++|.+   ++..|-+..  ..|.|.-+-
T Consensus       178 ~~~ev~S~~Fg~---~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          178 RVNDITDLEFSK---DGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             SCCCEEEEEECT---TSSCEEEEECTTSCEEEEES
T ss_pred             ccceEEEEEEcC---CCcEEEEEecCCCCCEEEEC
Confidence            224466888887   366677755  567775443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=92.88  E-value=5.1  Score=36.02  Aligned_cols=145  Identities=14%  Similarity=0.135  Sum_probs=77.3

Q ss_pred             CCcEEEEEcC--CCCccccc------cCC-CCeeEEEE--CCC-CCEEEEEEcCCceeeeeeeCCC-CCCcccccccccc
Q 014302          257 DGTFYLWETN--TWTSEPWS------STS-GFVTGATW--DPE-GRMILLAFAGSLTLGSIHFASK-PPSLDAHLLPVDL  323 (427)
Q Consensus       257 dg~v~iwd~~--~~~~~~~~------~~~-~~v~~v~~--spd-g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~  323 (427)
                      +++|.+|++.  +.......      ... ..+..+|+  +|. +++.++....++.+.+|.+... .......      
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~------  171 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGK------  171 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEE------
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccce------
Confidence            5789999774  33321111      112 56777888  774 5555566677778888888653 1112111      


Q ss_pred             ccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec-----cCceEEEeeeeeeeCCCCCCCceeEEeccC
Q 014302          324 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR-----RTPLISLSLIGFIRGPGDNPKPVAFSFHDK  398 (427)
Q Consensus       324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  398 (427)
                       ....+...+.+..|+.++...+|.+   +.++.  | |..++.+     +..++....     .......+-.++..+.
T Consensus       172 -lVR~f~lgsq~EgcvvDd~~g~Lyv---~eEd~--G-Iw~~da~p~~~~~~~~v~~~~-----~g~l~aDvEGLai~~~  239 (355)
T 3amr_A          172 -KVRAFKMNSQTEGMAADDEYGRLYI---AEEDE--A-IWKFSAEPDGGSNGTVIDRAD-----GRHLTRDIEGLTIYYA  239 (355)
T ss_dssp             -EEEEEECSSCEEEEEEETTTTEEEE---EETTT--E-EEEEECSTTSCSCCEEEEEBS-----SSSBCSCEEEEEEEEC
T ss_pred             -EEEEecCCCCcceEEEcCCCCeEEE---ecccc--e-EEEEeCCcCCCCCceEEEEec-----CCccccCcceEEEEec
Confidence             1223344557889999998888877   55551  2 4444433     122222111     1111112334555332


Q ss_pred             C-CCCceeEEEeeCceEEEEec
Q 014302          399 F-KQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       399 ~-~~g~~l~v~~~~g~i~~~~~  419 (427)
                      . ..|.|++.+=.+....+|+.
T Consensus       240 ~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          240 ADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             GGGCEEEEEEEGGGTEEEEEES
T ss_pred             CCCCEEEEEEcCCCCEEEEEEC
Confidence            1 12445665556778888875

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.68  E-value=1  Score=42.43  Aligned_cols=110  Identities=9%  Similarity=0.153  Sum_probs=61.1

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---------cCCCCeeEEEECCC---CCEEEEEEcC------
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---------STSGFVTGATWDPE---GRMILLAFAG------  298 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~~v~~v~~spd---g~~l~~~~~~------  298 (427)
                      ...+.|+|.|+|+++++-...+.|++++...+....+.         ........++|+|+   +..|+++...      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45678999999986666543456888876544432211         13456779999996   5566554432      


Q ss_pred             ------CceeeeeeeCCCCCCccccccccc-cccceeeccCCceeEEEECCCCCEEEEE
Q 014302          299 ------SLTLGSIHFASKPPSLDAHLLPVD-LPDIVSLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       299 ------~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                            ...|..+.+......+......+. ++.   ...+ ....|+|+|||.+.++.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~---~~~H-~~~~l~f~pDG~Lyv~~  161 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS---SKDH-QSGRLVIGPDQKIYYTI  161 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC---CSSC-CEEEEEECTTSCEEEEE
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCC---CCCC-CCCeEeECCCCeEEEEE
Confidence                  224555554432211211111010 110   0111 46899999999877664

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=92.68  E-value=1.3  Score=44.08  Aligned_cols=121  Identities=15%  Similarity=0.197  Sum_probs=71.8

Q ss_pred             EEEEcc-CCCEEEEEecCC-----------cEEEEEcCCCCccccc----cCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          241 ILKWSP-TGDYFFAAKFDG-----------TFYLWETNTWTSEPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       241 ~~~~sp-~g~~l~~~~~dg-----------~v~iwd~~~~~~~~~~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                      .+++.+ +++.++.|+.+.           .+.+||..+.+-....    .+.....++++..+|+.+++++.....+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            556677 787777776543           5889999877653332    233444567888999999988766656666


Q ss_pred             eeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecC-CCc--ceeEEEEEEeccCceEEE
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG-DDI--YKGLIAIYDARRTPLISL  375 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~-~d~--~~g~i~vwd~~~~~~~~~  375 (427)
                      ++.....  +. ...  ++      .....-.+++..++|+.+++   |+ .+.  ....+.+||..++....+
T Consensus       270 yd~~t~~--W~-~~~--~~------~~~R~~~s~~~~~dg~iyv~---GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          270 YDSSSDS--WI-PGP--DM------QVARGYQSSATMSDGRVFTI---GGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             EEGGGTE--EE-ECC--CC------SSCCSSCEEEECTTSCEEEE---CCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             ecCcCCc--ee-ECC--CC------CccccccceEEecCCeEEEE---eCcccCCcccccceEeCCCCCcceeC
Confidence            6654321  00 000  00      00111235566678998888   44 221  113589999988776544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.62  E-value=13  Score=40.10  Aligned_cols=208  Identities=11%  Similarity=0.170  Sum_probs=111.2

Q ss_pred             eEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccC
Q 014302          105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSG  184 (427)
Q Consensus       105 l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~  184 (427)
                      .-.||..+.||.=. ..+++|+|++..   .....+.....|.--.|-..  ..|+.-.+..|.-|++. +.        
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k---~klks~~~~e~VvfWkWis~--~~l~lVT~~aVyHW~~~-~~--------  135 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHTMTDDVTFWKWISL--NTVALVTDNAVYHWSME-GE--------  135 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHh---hhhcccccCCCceEEEecCC--CeeEEEcCCeEEEeccC-CC--------
Confidence            34588888777664 789999999877   22222334456776677654  46666677889999996 10        


Q ss_pred             cccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EE------ecC
Q 014302          185 AASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AA------KFD  257 (427)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~------~~d  257 (427)
                                     ..+...++.+..                    +  ....|.....+++.++++ +|      ...
T Consensus       136 ---------------s~P~k~fdR~~~--------------------L--~~~QIinY~~d~~~kW~~l~gi~~~~~~v~  178 (1630)
T 1xi4_A          136 ---------------SQPVKMFDRHSS--------------------L--AGCQIINYRTDAKQKWLLLTGISAQQNRVV  178 (1630)
T ss_pred             ---------------CccHHHHhcchh--------------------c--ccCeeEEeeeCCCCCeEEEEeeccCCCccc
Confidence                           012222222200                    0  012344445566666655 22      235


Q ss_pred             CcEEEEEcCCCCccccccCCCCeeEEEEC--C-CCCEEEEEEc--CCceeeeeeeCCC---CCCccccccccccccceee
Q 014302          258 GTFYLWETNTWTSEPWSSTSGFVTGATWD--P-EGRMILLAFA--GSLTLGSIHFASK---PPSLDAHLLPVDLPDIVSL  329 (427)
Q Consensus       258 g~v~iwd~~~~~~~~~~~~~~~v~~v~~s--p-dg~~l~~~~~--~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~  329 (427)
                      |.+.+|...........+|.+.-..+...  + ....+.++..  .++.+.++.+...   .+.+......+.++.  . 
T Consensus       179 G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~--~-  255 (1630)
T 1xi4_A          179 GAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP--E-  255 (1630)
T ss_pred             ceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc--c-
Confidence            78999998877666665555443333221  1 1223333322  1357778877553   111211111111110  0 


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ....-.-+|..|+.-..+.+....      |.|++||+.++.++
T Consensus       256 ~~~Dfpv~~~vs~k~g~iy~itk~------G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          256 AQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCI  293 (1630)
T ss_pred             cccCcceEEEeccccCEEEEEecC------ceEEEEecccchhh
Confidence            011234566777666665553333      66999999998875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.39  E-value=2.3  Score=38.38  Aligned_cols=111  Identities=18%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc-------ccCCCCeeEEEECCC---CCEEEEEE--cCCceee
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW-------SSTSGFVTGATWDPE---GRMILLAF--AGSLTLG  303 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~-------~~~~~~v~~v~~spd---g~~l~~~~--~~~~~i~  303 (427)
                      ....+.|+|.|||+.+++-...|.|++++...++...+       .........++++|+   +..|++.-  .....|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            45678999999998666655589999998655443211       134567889999996   44444332  2334555


Q ss_pred             eeeeCCCC---CCcccccccc-ccccceeeccCCceeEEEECCCCCEEEEE
Q 014302          304 SIHFASKP---PSLDAHLLPV-DLPDIVSLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       304 ~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                      .+.+....   ..+......+ .++.   ...+ ....|+|.|||.+.++.
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~---~~~H-~g~~l~fgpDG~Lyvt~  157 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPK---GVIH-NGGRIAFGPDKMLYAGT  157 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECC---CSSC-CCCCEEECTTSCEEEEC
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCC---CCCc-cCccccCCCCCCEEEEE
Confidence            55554421   1111110000 0111   0111 34679999999866663

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=92.14  E-value=9.6  Score=37.42  Aligned_cols=118  Identities=8%  Similarity=-0.049  Sum_probs=70.9

Q ss_pred             CeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCc
Q 014302          238 GLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSL  314 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~  314 (427)
                      ....+++.+.++.|+ +-+..+.|.+.++.......+. ..-....++++.|...+|+.+.... ..|....+.......
T Consensus       393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~  472 (619)
T 3s94_A          393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV  472 (619)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE
Confidence            445778887666666 5555778999888755433332 3345678999999766666654332 455555444321100


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                         .         ....-...+.|++++++..|.++  +...   +.|..+++.....
T Consensus       473 ---l---------~~~~l~~P~GlalD~~~~~LY~a--D~~~---~~I~~~~~dG~~~  513 (619)
T 3s94_A          473 ---L---------VNTSLGWPNGLALDYDEGKIYWG--DAKT---DKIEVMNTDGTGR  513 (619)
T ss_dssp             ---E---------ECSSCSCEEEEEEETTTTEEEEE--ETTT---TEEEEEESSSCCC
T ss_pred             ---E---------EeCCCCCCeeeEEcccCCEEEEE--ECCC---CEEEEEecCCCce
Confidence               0         00011267899999988888875  3333   5688888865443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.12  E-value=6.1  Score=35.69  Aligned_cols=60  Identities=17%  Similarity=0.197  Sum_probs=40.0

Q ss_pred             CCeEEEEEccCCCEEEE-EecCCcEEEEEcCCCC-cc--ccccCCCCeeEEEECC-CCCEEEEEE
Q 014302          237 GGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWT-SE--PWSSTSGFVTGATWDP-EGRMILLAF  296 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~-~~~dg~v~iwd~~~~~-~~--~~~~~~~~v~~v~~sp-dg~~l~~~~  296 (427)
                      ..-..++||||++.|+. -+..+.|+.|++.... ..  ......+..-.++..+ +|++.+++.
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence            45678999999998884 4567889999986422 21  1113345567788888 487766443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=90.60  E-value=5.5  Score=39.56  Aligned_cols=53  Identities=9%  Similarity=0.172  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          257 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      +|.|..||+.+++..-............+...|..++++ ..++.++.++....
T Consensus       437 ~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g-~~dg~l~a~d~~tG  489 (668)
T 1kv9_A          437 SGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQG-TAAGQMHAYSADKG  489 (668)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEE-CTTSEEEEEETTTC
T ss_pred             cceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEE-CCcccchhhhhhcC
Confidence            478999999888763222222233333344457777766 55568888777654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=90.47  E-value=2.3  Score=41.43  Aligned_cols=52  Identities=13%  Similarity=0.153  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEE
Q 014302          245 SPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAF  296 (427)
Q Consensus       245 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~  296 (427)
                      ...+..++.++.|+.|+.||.++++..-..  ........+.+..+|+.++...
T Consensus       472 ~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          472 YTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence            335677888999999999999998874322  2111122344567787655443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=90.05  E-value=2.4  Score=41.36  Aligned_cols=48  Identities=21%  Similarity=0.299  Sum_probs=31.8

Q ss_pred             CCCEEEEEecCCcEEEEEcCCCCccccccCCCCe--eEEEECCCCCEEEE
Q 014302          247 TGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFV--TGATWDPEGRMILL  294 (427)
Q Consensus       247 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v--~~v~~spdg~~l~~  294 (427)
                      .+..++.++.|+.++.||.++++..-.......+  .-+.|..+|+..+.
T Consensus       496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~  545 (582)
T 1flg_A          496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG  545 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence            4667888999999999999999874322112222  23666678874443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=89.93  E-value=12  Score=34.72  Aligned_cols=209  Identities=11%  Similarity=0.176  Sum_probs=115.9

Q ss_pred             eeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcccccc
Q 014302          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  183 (427)
Q Consensus       104 ~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~  183 (427)
                      +.-.||..+.||.=. ..+++|+|++..   .....+.....|.--.|-.+  ..|+.-.+..|.-|++.-+.       
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K---~klks~~~~e~VvfWkWis~--~~l~lVT~taVyHWsi~~~s-------  136 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHTMTDDVTFWKWISL--NTVALVTDNAVYHWSMEGES-------  136 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTT---EEEEEEECSSCCCEEEEEET--TEEEEECSSEEEEEESSSSC-------
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHh---hhhcceecCCCceEEEecCC--CeEEEEcCCeeEEecccCCC-------
Confidence            445689888888765 789999999987   33333334557777788755  47777778889999986100       


Q ss_pred             CcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEe------c
Q 014302          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAK------F  256 (427)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~------~  256 (427)
                                       .+...++.|..                    +  ....|.....+++.++++ +|=      -
T Consensus       137 -----------------~P~kvFdR~~~--------------------L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v  177 (494)
T 1bpo_A          137 -----------------QPVKMFDRHSS--------------------L--AGCQIINYRTDAKQKWLLLTGISAQQNRV  177 (494)
T ss_dssp             -----------------CCEEEEECCGG--------------------G--TTCEEEEEEECTTSSEEEEEEEEEETTEE
T ss_pred             -----------------Cchhheecchh--------------------c--ccceEEEEEECCCCCeEEEEeecccCCcc
Confidence                             11111221100                    0  012234444556666555 221      2


Q ss_pred             CCcEEEEEcCCCCccccccCCCCeeEEEECCC---CCEEEEEEcC--CceeeeeeeCCCC---CCcccccccccccccee
Q 014302          257 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPE---GRMILLAFAG--SLTLGSIHFASKP---PSLDAHLLPVDLPDIVS  328 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spd---g~~l~~~~~~--~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~  328 (427)
                      .|.+.+|..+........+|...-..+...-+   ...+.++...  ++.+.++.+....   +.+......+.++.   
T Consensus       178 ~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fpp---  254 (494)
T 1bpo_A          178 VGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP---  254 (494)
T ss_dssp             EEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCT---
T ss_pred             cceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCc---
Confidence            36789999887776666666554443333211   1233334332  2577888875431   11211111111110   


Q ss_pred             eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ....+-.-+|..|+.-..+.+....      |.|++||++++.++
T Consensus       255 e~~~DFPvamqvs~kygviyviTK~------G~i~lyDleTgt~i  293 (494)
T 1bpo_A          255 EAQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCI  293 (494)
T ss_dssp             TSTTCCEEEEEEETTTTEEEEEETT------SEEEEEETTTCCEE
T ss_pred             ccccCceeEEEecccCCEEEEEecC------ceEEEEecccceee
Confidence            0011234577788777766664333      66999999999987

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=87.79  E-value=10  Score=35.70  Aligned_cols=52  Identities=15%  Similarity=0.113  Sum_probs=34.9

Q ss_pred             CCeEEEEEccCCC-EEEEEecCCcEEEEEcCCCC-ccc-------ccc-----CCCCeeEEEECCC
Q 014302          237 GGLSILKWSPTGD-YFFAAKFDGTFYLWETNTWT-SEP-------WSS-----TSGFVTGATWDPE  288 (427)
Q Consensus       237 ~~v~~~~~sp~g~-~l~~~~~dg~v~iwd~~~~~-~~~-------~~~-----~~~~v~~v~~spd  288 (427)
                      ..-+.|+|.|+|. .|+++...|.|++++..... ...       +..     .......++|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            4567899999996 56666778999999754321 111       111     1456789999996

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=87.29  E-value=17  Score=33.78  Aligned_cols=118  Identities=14%  Similarity=0.093  Sum_probs=73.8

Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC---Ccccc
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP---SLDAH  317 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~---~~~~~  317 (427)
                      +.-.+|..+.||.-. ...+.|+|+++............|.--.|-.+. .|+..+  +..++-|.+.+...   .++.|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~-~l~lVT--~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT--DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT-EEEEEC--SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC-eEEEEc--CCeeEEecccCCCCchhheecc
Confidence            444677777777544 788999999988775554445567777776544 444432  23788888865311   11222


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC-cceeEEEEEEeccCce
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD-IYKGLIAIYDARRTPL  372 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d-~~~g~i~vwd~~~~~~  372 (427)
                      ..         + .+..|-....+++.+|++.+.-...+ +-.|.+.+|..+.+..
T Consensus       146 ~~---------L-~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s  191 (494)
T 1bpo_A          146 SS---------L-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS  191 (494)
T ss_dssp             GG---------G-TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE
T ss_pred             hh---------c-ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc
Confidence            11         1 12367888889999999875322112 2248899999876543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=87.24  E-value=5.4  Score=38.26  Aligned_cols=130  Identities=13%  Similarity=0.033  Sum_probs=78.2

Q ss_pred             CeEEEEEccCCCEEEE-EecCCcEEEEEcCCCCc---------c----ccccCCCCeeEEEECCCCCEEEEEEcCCceee
Q 014302          238 GLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTS---------E----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLG  303 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~-~~~dg~v~iwd~~~~~~---------~----~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~  303 (427)
                      ....+..+|||+++++ +--+.++.++|++....         .    ......-.....+|.++| ..+++.--++.+.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEE
Confidence            3455778999999995 55688999999875211         0    011344566788999999 5666666677888


Q ss_pred             eeeeCCCCCCccccc-cccccccceeeccCCceeEEEE------CCCCCEEEEEEecCCCcc-------eeEEEEEEecc
Q 014302          304 SIHFASKPPSLDAHL-LPVDLPDIVSLTGSQGIEKIAW------DASGERLAVSYKGGDDIY-------KGLIAIYDARR  369 (427)
Q Consensus       304 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~v~~------sp~g~~La~~~~~~~d~~-------~g~i~vwd~~~  369 (427)
                      .|++......+.+.. .++    ...+..+-.+-.+.-      .|||+||++...-+-|++       +-.-.|+|+..
T Consensus       403 kWni~~a~~~~~g~~~~~v----~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          403 KWNMEEAVRAYKGEKVNYI----KQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             EEEHHHHHHHHTTCCCCCE----EEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             EEeccHHHHHhcCccCCee----eeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence            888765311111111 001    111222222333322      589999999877777764       33457888865


Q ss_pred             Cce
Q 014302          370 TPL  372 (427)
Q Consensus       370 ~~~  372 (427)
                      .+.
T Consensus       479 dkM  481 (638)
T 3sbq_A          479 DEM  481 (638)
T ss_dssp             SSC
T ss_pred             Cce
Confidence            443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=85.14  E-value=29  Score=33.78  Aligned_cols=28  Identities=11%  Similarity=0.081  Sum_probs=19.4

Q ss_pred             eeEEcCCCCE----EEEEeCCCeEEEEEccCC
Q 014302          104 GVSWHQHKHI----VAFISGSTQVIVRDYEDS  131 (427)
Q Consensus       104 ~l~~sp~g~~----lat~~~d~~v~vwd~~~~  131 (427)
                      .++++|.+..    |++++.|+.+..+|..++
T Consensus       110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A          110 GLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             CCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             ceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            3455444444    788888999888887766

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=81.74  E-value=15  Score=35.93  Aligned_cols=47  Identities=17%  Similarity=0.173  Sum_probs=30.8

Q ss_pred             CCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEE
Q 014302          247 TGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMIL  293 (427)
Q Consensus       247 ~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~  293 (427)
                      .+..++.++.|+.++.||.++++..-..  .......-+.|..+|+..+
T Consensus       483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv  531 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV  531 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence            5677888999999999999998863221  2222223355666776443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	427
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.003

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 19/52 (36%)

Query: 242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL 293
           LK++  G +F +   D     W T    S   S  S  V       + + I+
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIV 322

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 20/100 (20%)

Query: 214 ITALSWGPDGRF-------------------PGLGTPIRRGFGGLSILKWSPTGDYFFAA 254
           I A+ + P+G                       +         G++ + +S +G    A 
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288

Query: 255 KFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMIL 293
             D    +W+          +     V+      +G  + 
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)

Query: 242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMIL 293
             W+           +   +++E +             +G VTG  W P+   I+
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	427
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.95
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.94
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.91
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.89
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.84
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.83
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.79
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.78
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.74
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.72
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.69
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.69
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.69
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.64
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.64
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.57
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.54
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.46
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.46
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.45
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.4
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.36
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.23
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.22
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.21
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.02
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.02
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.0
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.95
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.82
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.8
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.8
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.76
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.7
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.67
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.66
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.64
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.46
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.46
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.3
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.28
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.2
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.08
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.04
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	97.91
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.57
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.64
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.63
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.02
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.46
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.07
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.78
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.5
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.88
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.14
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.84
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.99
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	90.19
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.08
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	89.63
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	88.03
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.58
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.05
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	81.59
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	80.14

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-32  Score=252.05  Aligned_cols=265  Identities=13%  Similarity=0.148  Sum_probs=203.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc---ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD---ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~---~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~  177 (427)
                      .|++++|+|+|++||+|+ ||.|+|||+......   .......|...|.+++|+|++..+++++.++.|++|++..   
T Consensus        53 ~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~---  128 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA---  128 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC---
T ss_pred             cEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccc---
Confidence            799999999999999997 899999999876221   2223346889999999999995444445669999999861   


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc--------------e---EEeccCCeE
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT--------------P---IRRGFGGLS  240 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------------~---~~~~~~~v~  240 (427)
                                          ........+..+ ...+..++|+|++.+++.+.              .   ...|...+.
T Consensus       129 --------------------~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~  187 (337)
T d1gxra_         129 --------------------PTPRIKAELTSS-APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  187 (337)
T ss_dssp             --------------------C--EEEEEEECS-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             --------------------cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                111233334444 67788999999988755321              1   223678899


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      +++|++++..+++++.|+.|++||+++++......+...|.+++|+|++++|++++.+ +.+.+|++.....        
T Consensus       188 ~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d-~~i~i~d~~~~~~--------  258 (337)
T d1gxra_         188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMES-SNVEVLHVNKPDK--------  258 (337)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETT-SCEEEEETTSSCE--------
T ss_pred             cccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccc-ccccccccccccc--------
Confidence            9999999999999999999999999988876666788999999999999999987554 4788887765421        


Q ss_pred             cccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCC
Q 014302          321 VDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFK  400 (427)
Q Consensus       321 ~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  400 (427)
                           .....+...|.+++|+|+|++|++   ++.|   ++|++||+.++..+...      .  ......+++|.|+  
T Consensus       259 -----~~~~~~~~~i~~v~~s~~g~~l~s---~s~D---g~i~iwd~~~~~~~~~~------~--~~~~v~~~~~s~d--  317 (337)
T d1gxra_         259 -----YQLHLHESCVLSLKFAYCGKWFVS---TGKD---NLLNAWRTPYGASIFQS------K--ESSSVLSCDISVD--  317 (337)
T ss_dssp             -----EEECCCSSCEEEEEECTTSSEEEE---EETT---SEEEEEETTTCCEEEEE------E--CSSCEEEEEECTT--
T ss_pred             -----ccccccccccceEEECCCCCEEEE---EeCC---CeEEEEECCCCCEEEEc------c--CCCCEEEEEEeCC--
Confidence                 112234458999999999999998   5566   77999999988776332      1  1223668999986  


Q ss_pred             CCceeEEEeeCceEEEEeccc
Q 014302          401 QGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       401 ~g~~l~v~~~~g~i~~~~~~~  421 (427)
                       +..|++|..||.|.+|++.|
T Consensus       318 -~~~l~t~s~D~~I~vWdl~~  337 (337)
T d1gxra_         318 -DKYIVTGSGDKKATVYEVIY  337 (337)
T ss_dssp             -SCEEEEEETTSCEEEEEEEC
T ss_pred             -CCEEEEEeCCCeEEEEEEEC
Confidence             67899999999999999887

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.7e-32  Score=244.58  Aligned_cols=277  Identities=9%  Similarity=0.045  Sum_probs=197.1

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCccee-eccCCcCCeeEEEEccCCCceEEEecCCeEEEEe
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~  171 (427)
                      +++++|  .|++++|+|+|++||+|+.|++|+|||+.++  .... ....|...|++++|+|++ .+++++.++.+++|+
T Consensus         6 ~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~--~~~~~~~~~h~~~v~~v~~~~~g-~~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG--ISNRVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC--CEEECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEEC
T ss_pred             eEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC--cEEEEEcCCCCCcEEEEEeeccc-eeecccceeeEEEec
Confidence            345667  7999999999999999999999999999876  3333 334688999999999999 789999999999999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------E-EeccCCe
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------I-RRGFGGL  239 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------~-~~~~~~v  239 (427)
                      ......                       .............+.+++|+|+|+++..+..           . ......+
T Consensus        83 ~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~  139 (299)
T d1nr0a2          83 AGGSGV-----------------------DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNS  139 (299)
T ss_dssp             SSSSSS-----------------------CTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCE
T ss_pred             cCCccc-----------------------ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            861100                       0001111123566788999999987542211           1 1134568


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEEcCCCCccc--cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccc
Q 014302          240 SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  317 (427)
Q Consensus       240 ~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~  317 (427)
                      .+++|+|++++|++++.|+.|++||+++.+...  ...|...|.+++|+|++++|++++. ++.+++|++.+....... 
T Consensus       140 ~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~-  217 (299)
T d1nr0a2         140 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANNFELAHT-  217 (299)
T ss_dssp             EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGTTEESCC-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc-
Confidence            889999999999999999999999998876533  3478899999999999999987654 448888887654210000 


Q ss_pred             ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEecc
Q 014302          318 LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHD  397 (427)
Q Consensus       318 ~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  397 (427)
                              .....+...|++++|+|++++||+   ++.|   +.|+|||+++.......    .... ....++...+.+
T Consensus       218 --------~~~~~h~~~v~~l~~s~~~~~l~s---gs~d---g~i~iwd~~~~~~~~~~----~~~~-~~~~~v~~~~~~  278 (299)
T d1nr0a2         218 --------NSWTFHTAKVACVSWSPDNVRLAT---GSLD---NSVIVWNMNKPSDHPII----IKGA-HAMSSVNSVIWL  278 (299)
T ss_dssp             --------CCCCCCSSCEEEEEECTTSSEEEE---EETT---SCEEEEETTCTTSCCEE----ETTS-STTSCEEEEEEE
T ss_pred             --------ccccccccccccccccccccceEE---EcCC---CEEEEEECCCCCcceEE----EecC-CCCCcEEEEEEC
Confidence                    001113448999999999999999   5566   66999999876543111    1111 222233333433


Q ss_pred             CCCCCceeEEEeeCceEEEEeccc
Q 014302          398 KFKQGPLLSVCWSSGFCCTYPLIF  421 (427)
Q Consensus       398 ~~~~g~~l~v~~~~g~i~~~~~~~  421 (427)
                      +   +..|+.|..||.|.+|++.|
T Consensus       279 ~---~~~l~s~s~D~~i~iWdl~~  299 (299)
T d1nr0a2         279 N---ETTIVSAGQDSNIKFWNVPF  299 (299)
T ss_dssp             E---TTEEEEEETTSCEEEEECCC
T ss_pred             C---CCEEEEEeCCCEEEEEeccC
Confidence            3   44677777999999999987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.2e-31  Score=239.54  Aligned_cols=282  Identities=12%  Similarity=0.207  Sum_probs=199.3

Q ss_pred             cccCCCCCCCCCCceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCe
Q 014302           88 LLHPDHVHLLPEVDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGG  166 (427)
Q Consensus        88 ~~~p~~~~~l~~~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~  166 (427)
                      .+||..+...++ .+..++++|+|+.||+++ ++.|.+|+++..  .......+|...|++++|+|+| ++|++| .++.
T Consensus         7 ~~~~~~p~~~r~-~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~--~~~~~~~~H~~~v~~~~~sp~g-~~latg~~dg~   81 (311)
T d1nr0a1           7 ALFPSLPRTARG-TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSL--TDTEIYTEHSHQTTVAKTSPSG-YYCASGDVHGN   81 (311)
T ss_dssp             EEECCCCCCCTT-CCCCCEECTTSSEEEEEE-TTEEEEEETTCS--SCCEEECCCSSCEEEEEECTTS-SEEEEEETTSE
T ss_pred             ccccCCCCCCCC-CeEEEEEcCCCCEEEEEe-CCEEEEEECCCC--ceeEEEcCCCCCEEEEEEeCCC-CeEeccccCce
Confidence            344443333333 456889999999999985 667999999876  4555567899999999999999 566655 5699


Q ss_pred             EEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------------
Q 014302          167 ICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT----------------  230 (427)
Q Consensus       167 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------  230 (427)
                      |+||++...                       .......+..+ ...|.+++|+|+++++..+.                
T Consensus        82 i~iwd~~~~-----------------------~~~~~~~~~~~-~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          82 VRIWDTTQT-----------------------THILKTTIPVF-SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             EEEEESSST-----------------------TCCEEEEEECS-SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             Eeeeeeecc-----------------------ccccccccccc-cCcccccccccccccccccccccccccccccccccc
Confidence            999999711                       11122234444 67899999999998754321                


Q ss_pred             ---eEEeccCCeEEEEEccCCCE-EEEEecCCcEEEEEcCCCCccc-cccCCCCeeEEEECCCCCEEEEEEcCCceeeee
Q 014302          231 ---PIRRGFGGLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSI  305 (427)
Q Consensus       231 ---~~~~~~~~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~  305 (427)
                         .+..|...|.+++|+|++++ |++|+.|+.|++||+++.+... ...|...|.+++|+|+++++++++. ++.+.+|
T Consensus       138 ~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~-d~~v~~~  216 (311)
T d1nr0a1         138 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGTIVLY  216 (311)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEE
T ss_pred             ccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccc-ccccccc
Confidence               12346788999999999986 6689999999999999887643 4478999999999999999998755 4478888


Q ss_pred             eeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCC
Q 014302          306 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPG  385 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~  385 (427)
                      ++......   +.  ..........+.+.|.+++|+|++++|++   ++.|   |+|+|||+++++++...+.+    ..
T Consensus       217 d~~~~~~~---~~--~~~~~~~~~~h~~~V~~~~~s~~~~~l~t---gs~D---g~v~iwd~~t~~~~~~l~~~----~~  281 (311)
T d1nr0a1         217 NGVDGTKT---GV--FEDDSLKNVAHSGSVFGLTWSPDGTKIAS---ASAD---KTIKIWNVATLKVEKTIPVG----TR  281 (311)
T ss_dssp             ETTTCCEE---EE--CBCTTSSSCSSSSCEEEEEECTTSSEEEE---EETT---SEEEEEETTTTEEEEEEECC----SS
T ss_pred             cccccccc---cc--ccccccccccccccccccccCCCCCEEEE---EeCC---CeEEEEECCCCcEEEEEECC----CC
Confidence            77664211   00  11111222335568999999999999998   5566   77999999998876432211    11


Q ss_pred             CCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          386 DNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       386 ~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ......++.|.+     ..|+++..+|.|.+|+.
T Consensus       282 ~~~~~~~~~~~~-----~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         282 IEDQQLGIIWTK-----QALVSISANGFINFVNP  310 (311)
T ss_dssp             GGGCEEEEEECS-----SCEEEEETTCCEEEEET
T ss_pred             ccceEEEEEecC-----CEEEEEECCCEEEEEeC
Confidence            111233444433     34677779999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.3e-28  Score=224.89  Aligned_cols=272  Identities=14%  Similarity=0.175  Sum_probs=190.8

Q ss_pred             CCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302           96 LLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus        96 ~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      .|.+|  .|++++|+|++++||+|+.||+|+|||+...  ........|...|.+++|+|++..+++++.++.+.+|+..
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~--~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~  127 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT--NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK  127 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT--EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccc--eeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence            35667  8999999999999999999999999999877  4555566789999999999999555555566999999976


Q ss_pred             CCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC----------------cccCceEEeccC
Q 014302          174 YPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF----------------PGLGTPIRRGFG  237 (427)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~----------------l~~~~~~~~~~~  237 (427)
                      ......                     .....+..+ ........+..+...                .........+..
T Consensus       128 ~~~~~~---------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (340)
T d1tbga_         128 TREGNV---------------------RVSRELAGH-TGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG  185 (340)
T ss_dssp             SSCSCC---------------------CEEEEECCC-SSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSS
T ss_pred             cccccc---------------------ccceecccc-cccccccccccccccccccccccccccccccccccccccccce
Confidence            211100                     011111111 111111111111111                000111233556


Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccc
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDA  316 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~  316 (427)
                      .+....+.+.+.++++++.|+.|++||+++++.. .+..|...|.+++|+|++++|++++. ++.+++|++.......  
T Consensus       186 ~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~-d~~i~~~~~~~~~~~~--  262 (340)
T d1tbga_         186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD-DATCRLFDLRADQELM--  262 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTTEEEE--
T ss_pred             eEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC-CCeEEEEeeccccccc--
Confidence            7888899999999999999999999999988774 44588999999999999999998754 4578888776541100  


Q ss_pred             cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEec
Q 014302          317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFH  396 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~  396 (427)
                              ......+...|.+++|+|++++|++   ++.|   |.|++||+.++.++.     .+.+...  ...+++|.
T Consensus       263 --------~~~~~~~~~~i~~~~~s~~~~~l~~---g~~d---g~i~iwd~~~~~~~~-----~~~~H~~--~V~~l~~s  321 (340)
T d1tbga_         263 --------TYSHDNIICGITSVSFSKSGRLLLA---GYDD---FNCNVWDALKADRAG-----VLAGHDN--RVSCLGVT  321 (340)
T ss_dssp             --------EECCTTCCSCEEEEEECSSSCEEEE---EETT---SCEEEEETTTCCEEE-----EECCCSS--CEEEEEEC
T ss_pred             --------ccccccccCceEEEEECCCCCEEEE---EECC---CEEEEEECCCCcEEE-----EEcCCCC--CEEEEEEe
Confidence                    0011122347899999999999998   5556   669999999887763     2333222  36689998


Q ss_pred             cCCCCCceeEEEeeCceEEEEe
Q 014302          397 DKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       397 ~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      |+   +..|++|..||.|.+|+
T Consensus       322 ~d---~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         322 DD---GMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TT---SSCEEEEETTSCEEEEC
T ss_pred             CC---CCEEEEEccCCEEEEeC
Confidence            86   67788899999999995

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.4e-28  Score=229.60  Aligned_cols=278  Identities=13%  Similarity=0.138  Sum_probs=188.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcc----------------eeeccCCcCCeeEEEEccCCCceEEEecC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDA----------------CILTSDSQRDVKVLEWRPNGGRSLSVGCK  164 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~----------------~~~~~~~~~~v~~l~~sp~~~~~la~g~~  164 (427)
                      .|+||+|+|||++||+|+ |++|+||++..+....                ......|...|++++|+|++..+++++.+
T Consensus        64 ~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED  142 (388)
T ss_dssp             CCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccc
Confidence            799999999999999986 8999999997652100                01122467789999999999544444556


Q ss_pred             CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-------------
Q 014302          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-------------  231 (427)
Q Consensus       165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-------------  231 (427)
                      +.|++|+..                         .......+..| ...|.+++|++++..+..+..             
T Consensus       143 g~v~i~~~~-------------------------~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  196 (388)
T d1erja_         143 RLIRIWDIE-------------------------NRKIVMILQGH-EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ  196 (388)
T ss_dssp             SCEEEEETT-------------------------TTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ccccccccc-------------------------ccccccccccc-cccccccccccccccccccccceeeeeeeccccc
Confidence            999999987                         11334444455 778999999998876443211             


Q ss_pred             ---EEeccCCeEEEEEc-cCCCEEEEEecCCcEEEEEcCCCCccc--------cccCCCCeeEEEECCCCCEEEEEEcCC
Q 014302          232 ---IRRGFGGLSILKWS-PTGDYFFAAKFDGTFYLWETNTWTSEP--------WSSTSGFVTGATWDPEGRMILLAFAGS  299 (427)
Q Consensus       232 ---~~~~~~~v~~~~~s-p~g~~l~~~~~dg~v~iwd~~~~~~~~--------~~~~~~~v~~v~~spdg~~l~~~~~~~  299 (427)
                         ...+......+.++ +++++|++++.|+.|++||++++....        ...|...|.+++|+|++++|++++. +
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-d  275 (388)
T d1erja_         197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL-D  275 (388)
T ss_dssp             EEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET-T
T ss_pred             cccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC-C
Confidence               11233445555554 588899999999999999998876522        1267889999999999999987754 4


Q ss_pred             ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeee
Q 014302          300 LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIG  379 (427)
Q Consensus       300 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~  379 (427)
                      +.+.+|++.......................+...|.+++|+|+|++|++   ++.|   |.|++||+++++++..    
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s---g~~d---g~i~vwd~~~~~~~~~----  345 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS---GSKD---RGVLFWDKKSGNPLLM----  345 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE---EETT---SEEEEEETTTCCEEEE----
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEE---EeCC---CEEEEEECCCCcEEEE----
Confidence            58888887764221110000000011222345668999999999999998   5666   7799999999887532    


Q ss_pred             eeeCCCCCCCceeEEeccCC---CCCceeEEEeeCceEEEEec
Q 014302          380 FIRGPGDNPKPVAFSFHDKF---KQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       380 ~~~~~~~~~~~~~~~f~~~~---~~g~~l~v~~~~g~i~~~~~  419 (427)
                       +.+....  ..++++.+..   .++.+|+.|..||.|.+|++
T Consensus       346 -l~~H~~~--V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~  385 (388)
T d1erja_         346 -LQGHRNS--VISVAVANGSSLGPEYNVFATGSGDCKARIWKY  385 (388)
T ss_dssp             -EECCSSC--EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred             -EeCCCCC--EEEEEEecCcccCCCCCEEEEEeCCCEEEEEee
Confidence             3333222  4456554321   14778999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.5e-29  Score=222.86  Aligned_cols=266  Identities=13%  Similarity=0.197  Sum_probs=198.2

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEe
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWA  171 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~  171 (427)
                      ..|.+|  .|++|+|+|++++||+|+.|++|+|||+.++  ........|...|.+++|+|++ .+++++ .++.+.+|+
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~--~~~~~~~~h~~~V~~~~~~~~~-~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWD   87 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC--CCCEEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEE
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC--CEEEEEeCCCCcEEEEeeeccc-cccccccccccccccc
Confidence            345666  8999999999999999999999999999887  4555567899999999999999 555555 457788888


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC--------------c---eEEe
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG--------------T---PIRR  234 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--------------~---~~~~  234 (427)
                      ..                         .......+..+ ...+.++.|+|+++.+..+              .   .+..
T Consensus        88 ~~-------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  141 (317)
T d1vyhc1          88 FQ-------------------------GFECIRTMHGH-DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG  141 (317)
T ss_dssp             TT-------------------------SSCEEECCCCC-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             cc-------------------------ccccccccccc-cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc
Confidence            76                         11222223333 6677888888888764422              1   2344


Q ss_pred             ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCC--------------------CEEE
Q 014302          235 GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEG--------------------RMIL  293 (427)
Q Consensus       235 ~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg--------------------~~l~  293 (427)
                      |...+.+++|+|++++|++++.|+.|++|++.+.+.. .+..+...+..++|+|++                    ..++
T Consensus       142 ~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (317)
T d1vyhc1         142 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL  221 (317)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred             CCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE
Confidence            7788999999999999999999999999999988764 344778888899988764                    3455


Q ss_pred             EEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          294 LAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       294 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ++ +.++.+++|++.+....            .....+...|.+++|+|++++|++   ++.|   |.|+|||+++++++
T Consensus       222 ~~-~~d~~i~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~l~s---~~~d---g~i~iwd~~~~~~~  282 (317)
T d1vyhc1         222 SG-SRDKTIKMWDVSTGMCL------------MTLVGHDNWVRGVLFHSGGKFILS---CADD---KTLRVWDYKNKRCM  282 (317)
T ss_dssp             EE-ETTSEEEEEETTTTEEE------------EEEECCSSCEEEEEECSSSSCEEE---EETT---TEEEEECCTTSCCC
T ss_pred             ec-cCCCEEEEEECCCCcEE------------EEEeCCCCCEEEEEECCCCCEEEE---EECC---CeEEEEECCCCcEE
Confidence            54 45557777776654210            111123458999999999999998   5556   67999999988765


Q ss_pred             EEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          374 SLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      ..     +.+...  ...+++|+|+   +.+|++|..||.|.+|+
T Consensus       283 ~~-----~~~h~~--~V~~~~~s~~---~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         283 KT-----LNAHEH--FVTSLDFHKT---APYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EE-----EECCSS--CEEEEEECSS---SSCEEEEETTSEEEEEC
T ss_pred             EE-----EcCCCC--CEEEEEEcCC---CCEEEEEeCCCeEEEeC
Confidence            32     233222  3668999886   67789999999999985

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2e-28  Score=227.93  Aligned_cols=251  Identities=13%  Similarity=0.204  Sum_probs=179.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      +|+|++|+|+|++||+|+.|+.|+||+++...........+|.+.|++++|+|++..+++++.|+.|+||++.       
T Consensus         9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~-------   81 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-------   81 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE-------
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeec-------
Confidence            5899999999999999999999999999876333445556899999999999999544445566999999997       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                        .+              .+....                          .+..|...+.+++|+|++++|++++.|+.|
T Consensus        82 --~~--------------~~~~~~--------------------------~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i  119 (371)
T d1k8kc_          82 --GR--------------TWKPTL--------------------------VILRINRAARCVRWAPNEKKFAVGSGSRVI  119 (371)
T ss_dssp             --TT--------------EEEEEE--------------------------ECCCCSSCEEEEEECTTSSEEEEEETTSSE
T ss_pred             --cc--------------cccccc--------------------------ccccccccccccccccccccceeecccCcc
Confidence              11              111111                          122356679999999999999999999999


Q ss_pred             EEEEcCCCCccc-----cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccc--cccc----ceee
Q 014302          261 YLWETNTWTSEP-----WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPV--DLPD----IVSL  329 (427)
Q Consensus       261 ~iwd~~~~~~~~-----~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~----~~~~  329 (427)
                      ++|++.......     ...|...|.+++|+|++++|++++. ++.+++|+.............+.  ....    ....
T Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (371)
T d1k8kc_         120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS  198 (371)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred             eeeeeecccccccccccccccccccccccccccccceecccc-CcEEEEEeeccCccccccccccccccccceeeeeecc
Confidence            999988765421     2267889999999999999987754 45888887765422111110100  0110    1122


Q ss_pred             ccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEe
Q 014302          330 TGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCW  409 (427)
Q Consensus       330 ~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~  409 (427)
                      .+.+.|.+++|+|+|++||+   ++.|   ++|++||++.+..+...     .....  ...+++|.|+   +.+|++| 
T Consensus       199 ~~~~~v~~~~~s~~g~~l~s---~~~d---~~i~iwd~~~~~~~~~~-----~~~~~--~v~s~~fs~d---~~~la~g-  261 (371)
T d1k8kc_         199 SSCGWVHGVCFSANGSRVAW---VSHD---STVCLADADKKMAVATL-----ASETL--PLLAVTFITE---SSLVAAG-  261 (371)
T ss_dssp             CCSSCEEEEEECSSSSEEEE---EETT---TEEEEEEGGGTTEEEEE-----ECSSC--CEEEEEEEET---TEEEEEE-
T ss_pred             CccCcEEEEEeecccccccc---cccC---CcceEEeeecccceeee-----ecccc--cceeeeecCC---CCEEEEE-
Confidence            34568999999999999998   4555   67999999988765322     22222  2558899885   7788877 


Q ss_pred             eCceEEEEe
Q 014302          410 SSGFCCTYP  418 (427)
Q Consensus       410 ~~g~i~~~~  418 (427)
                      .|+.+.+|.
T Consensus       262 ~d~~~~~~~  270 (371)
T d1k8kc_         262 HDCFPVLFT  270 (371)
T ss_dssp             TTSSCEEEE
T ss_pred             cCCceEEEE
Confidence            477766654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-27  Score=215.45  Aligned_cols=221  Identities=12%  Similarity=0.136  Sum_probs=173.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++|+.|++|++||+.............|...|.+++|+|++..+++++.++.+++|++.       
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~-------  171 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-------  171 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-------
T ss_pred             cEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence            6999999999999999999999999999876444444556788899999999999444444566899999987       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC--------------ceE--EeccCCeEEEEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG--------------TPI--RRGFGGLSILKW  244 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--------------~~~--~~~~~~v~~~~~  244 (427)
                        ++                ........+ ...+.+++|++++..+..+              ..+  ..+...|.+++|
T Consensus       172 --~~----------------~~~~~~~~~-~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~  232 (337)
T d1gxra_         172 --NQ----------------TLVRQFQGH-TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY  232 (337)
T ss_dssp             --TT----------------EEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred             --cc----------------ccccccccc-ccccccccccccccccccccccccccccccccceeecccccccceEEEEE
Confidence              11                233333444 7789999999998875432              222  235688999999


Q ss_pred             ccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccc
Q 014302          245 SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP  324 (427)
Q Consensus       245 sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  324 (427)
                      +|++++|++++.|+.|++||+++.+......|...|.+++|+|+|++|++++. ++.+++|++.....            
T Consensus       233 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~-Dg~i~iwd~~~~~~------------  299 (337)
T d1gxra_         233 CPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGAS------------  299 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTCCE------------
T ss_pred             cccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeC-CCeEEEEECCCCCE------------
Confidence            99999999999999999999998887766789999999999999999998754 45888887665421            


Q ss_pred             cceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          325 DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       325 ~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                       .....+.+.|.+++|+|++++||+   ++.|   |+|+|||+
T Consensus       300 -~~~~~~~~~v~~~~~s~d~~~l~t---~s~D---~~I~vWdl  335 (337)
T d1gxra_         300 -IFQSKESSSVLSCDISVDDKYIVT---GSGD---KKATVYEV  335 (337)
T ss_dssp             -EEEEECSSCEEEEEECTTSCEEEE---EETT---SCEEEEEE
T ss_pred             -EEEccCCCCEEEEEEeCCCCEEEE---EeCC---CeEEEEEE
Confidence             122345568999999999999998   5566   66999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.95  E-value=3.8e-27  Score=213.83  Aligned_cols=222  Identities=19%  Similarity=0.182  Sum_probs=162.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC--CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~--~~i~iw~~~~~~~~  178 (427)
                      .|++++|+|+|++||+|+.|++|+|||+.............|...|.+++|+|++..+++++.+  ..+++|+++     
T Consensus        60 ~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~-----  134 (311)
T d1nr0a1          60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD-----  134 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT-----
T ss_pred             CEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccc-----
Confidence            8999999999999999999999999999887444444556789999999999999555555433  558899987     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-cccCc-----------------eEEeccCCeE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-PGLGT-----------------PIRRGFGGLS  240 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-----------------~~~~~~~~v~  240 (427)
                          ++                .....+..| ...|++++|+|++++ ++++.                 .+..|...|.
T Consensus       135 ----~~----------------~~~~~l~~h-~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~  193 (311)
T d1nr0a1         135 ----TG----------------TSNGNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVH  193 (311)
T ss_dssp             ----TC----------------CBCBCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEE
T ss_pred             ----cc----------------ccccccccc-ccccccccccccceeeeccccccccccccccccccccccccccccccc
Confidence                11                233345555 678999999999986 33221                 1234678899


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCcc--------ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--------PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  312 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--------~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~  312 (427)
                      ++.|+|++++|++++.|+.|++||++++...        ...+|...|.+++|+|+|++|++++. ++.+++|++.+...
T Consensus       194 ~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~-Dg~v~iwd~~t~~~  272 (311)
T d1nr0a1         194 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVATLKV  272 (311)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEE
T ss_pred             ccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeC-CCeEEEEECCCCcE
Confidence            9999999999999999999999999876642        12268899999999999999998754 55888888765421


Q ss_pred             --CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          313 --SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       313 --~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                        .+..+..           ....+.++.|+  +++|++   ++.|   |.|++||.+
T Consensus       273 ~~~l~~~~~-----------~~~~~~~~~~~--~~~l~s---~s~d---G~i~~wd~d  311 (311)
T d1nr0a1         273 EKTIPVGTR-----------IEDQQLGIIWT--KQALVS---ISAN---GFINFVNPE  311 (311)
T ss_dssp             EEEEECCSS-----------GGGCEEEEEEC--SSCEEE---EETT---CCEEEEETT
T ss_pred             EEEEECCCC-----------ccceEEEEEec--CCEEEE---EECC---CEEEEEeCC
Confidence              1111100           01134455555  556777   4445   669999963

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.2e-25  Score=203.32  Aligned_cols=274  Identities=15%  Similarity=0.248  Sum_probs=175.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCe-EEEEEccCCCCcceeeccCC-cCCeeEEEEccCC-CceEEEec-CCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQ-VIVRDYEDSGKDACILTSDS-QRDVKVLEWRPNG-GRSLSVGC-KGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~-v~vwd~~~~~~~~~~~~~~~-~~~v~~l~~sp~~-~~~la~g~-~~~i~iw~~~~~~  176 (427)
                      .+++++|+|+|+.||+++.+.. |+.|+.............+| ...|++++|+|+. ..+|++|+ |+.|+||++....
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~   98 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK   98 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence            5689999999999999875543 45555433333344444565 4679999999843 26777765 5999999986111


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC----------------ce---EEeccC
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG----------------TP---IRRGFG  237 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----------------~~---~~~~~~  237 (427)
                      .....                 .......+..+ ..+|.+++|+++|+.+...                ..   +..|..
T Consensus        99 ~~~~~-----------------~~~~~~~~~~~-~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (325)
T d1pgua1          99 ESNSV-----------------EVNVKSEFQVL-AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  160 (325)
T ss_dssp             GGTEE-----------------EEEEEEEEECC-SSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             ceeee-----------------ecccccccccc-cCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence            00000                 00111112223 6789999999999874321                11   234778


Q ss_pred             CeEEEEEccCCCE-EEEEecCCcEEEEEcCCCCcc----ccccCCCCeeEEEECCC-CCEEEEEEcCCceeeeeeeCCCC
Q 014302          238 GLSILKWSPTGDY-FFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPE-GRMILLAFAGSLTLGSIHFASKP  311 (427)
Q Consensus       238 ~v~~~~~sp~g~~-l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~v~~spd-g~~l~~~~~~~~~i~~~~~~~~~  311 (427)
                      .+.+++|+|++.+ +++++.|+.|++||+...+..    ....+...|.+++|+|+ +.+++++ ..++.+++|++....
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~-~~d~~i~iwd~~~~~  239 (325)
T d1pgua1         161 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDRKISCFDGKSGE  239 (325)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTCCEEEEETTTCC
T ss_pred             ccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccc-ccccceeeeeecccc
Confidence            8999999999986 558999999999999876642    22367888999999997 4666655 455588888876542


Q ss_pred             C--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCC--
Q 014302          312 P--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDN--  387 (427)
Q Consensus       312 ~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~--  387 (427)
                      .  .+.+|..++          .+.+.+++| |+|++|++   ++.|   ++|+|||+++++++...     ......  
T Consensus       240 ~~~~l~~~~~~v----------~~~~~s~~~-~dg~~l~s---~s~D---~~i~iwd~~~~~~~~~~-----~~~~~~~~  297 (325)
T d1pgua1         240 FLKYIEDDQEPV----------QGGIFALSW-LDSQKFAT---VGAD---ATIRVWDVTTSKCVQKW-----TLDKQQLG  297 (325)
T ss_dssp             EEEECCBTTBCC----------CSCEEEEEE-SSSSEEEE---EETT---SEEEEEETTTTEEEEEE-----ECCTTCGG
T ss_pred             cccccccccccc----------ccceeeeec-cCCCEEEE---EeCC---CeEEEEECCCCCEEEEE-----EecCCccc
Confidence            1  222222211          113344444 68999988   5566   67999999988765322     222222  


Q ss_pred             CCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          388 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       388 ~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ...+++.+.++   + .|..|..||.|.+|++
T Consensus       298 ~~~~~~~~~~~---~-~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         298 NQQVGVVATGN---G-RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GCEEEEEEEET---T-EEEEEETTSCEEEEET
T ss_pred             CeEEEEEECCC---C-EEEEEECCCEEEEEEC
Confidence            12233444332   3 4556668999999986

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=4.1e-26  Score=212.19  Aligned_cols=240  Identities=15%  Similarity=0.212  Sum_probs=165.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|++++|++++.|++|+|||+............+|...|.+++|+|++..+++++.++.+++|+++....   
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~---  129 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND---  129 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT---
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccc---
Confidence            79999999999999999999999999998774444455567888999999999995455555669999999872111   


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc------------------------------
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT------------------------------  230 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------------------------  230 (427)
                                        ..........+ ...|.+++|+|+|++++++.                              
T Consensus       130 ------------------~~~~~~~~~~~-~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~  190 (371)
T d1k8kc_         130 ------------------WWVCKHIKKPI-RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF  190 (371)
T ss_dssp             ------------------EEEEEEECTTC-CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred             ------------------ccccccccccc-ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccc
Confidence                              11222223333 77899999999998765331                              


Q ss_pred             --e---EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          231 --P---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       231 --~---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                        .   ...|...+.+++|+|+|++|++++.|+.|++||+++.+.. .+..|..+|.+++|+||+++|+++ .++ .+.+
T Consensus       191 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g-~d~-~~~~  268 (371)
T d1k8kc_         191 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDC-FPVL  268 (371)
T ss_dssp             TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTS-SCEE
T ss_pred             eeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEE-cCC-ceEE
Confidence              0   1235567999999999999999999999999999887763 344788899999999999888764 333 3333


Q ss_pred             eeeCCCCC--Cccccc-----------------ccccc----------ccceeeccCCceeEEEECCCC----CEEEEEE
Q 014302          305 IHFASKPP--SLDAHL-----------------LPVDL----------PDIVSLTGSQGIEKIAWDASG----ERLAVSY  351 (427)
Q Consensus       305 ~~~~~~~~--~~~~~~-----------------~~~~~----------~~~~~~~~~~~i~~v~~sp~g----~~La~~~  351 (427)
                      |.......  .+..+.                 ...+.          .......|.+.|+++++.+.+    ..+++  
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T--  346 (371)
T d1k8kc_         269 FTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT--  346 (371)
T ss_dssp             EEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEE--
T ss_pred             EEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEE--
Confidence            33222110  000000                 00000          000011255689999997654    34666  


Q ss_pred             ecCCCcceeEEEEEEeccC
Q 014302          352 KGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       352 ~~~~d~~~g~i~vwd~~~~  370 (427)
                       ++.|   |.|+|||+++.
T Consensus       347 -~g~D---g~v~iW~~~~~  361 (371)
T d1k8kc_         347 -TGMD---GGMSIWDVRSL  361 (371)
T ss_dssp             -EETT---SEEEEEEHHHH
T ss_pred             -EcCC---CeEEEEeCCcC
Confidence             5566   77999999763

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.9e-25  Score=203.58  Aligned_cols=218  Identities=15%  Similarity=0.232  Sum_probs=156.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|+|++|++|+.|+.|++|+....  .......+|...|.+++|++++..++.++.++.+++|+...      
T Consensus       123 ~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~------  194 (388)
T d1erja_         123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT------  194 (388)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT------
T ss_pred             CEEEEEECCCCCcceeccccccccccccccc--ccccccccccccccccccccccccccccccceeeeeeeccc------
Confidence            7999999999999999999999999998877  55666678999999999999995555556669999999871      


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeC-CCCCCcccCc------------------------eEEec
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWG-PDGRFPGLGT------------------------PIRRG  235 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~~~~------------------------~~~~~  235 (427)
                         .                ....... . .....++.+. +++++++.+.                        ....|
T Consensus       195 ---~----------------~~~~~~~-~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h  253 (388)
T d1erja_         195 ---G----------------QCSLTLS-I-EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH  253 (388)
T ss_dssp             ---T----------------EEEEEEE-C-SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCC
T ss_pred             ---c----------------ccccccc-c-ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCC
Confidence               1                1111111 1 2223333333 3555543221                        11236


Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-------------ccccCCCCeeEEEECCCCCEEEEEEcCCcee
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-------------PWSSTSGFVTGATWDPEGRMILLAFAGSLTL  302 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-------------~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i  302 (427)
                      ...|.+++|+|++++|++++.|+.|++||+++....             ....|...|.+++|+|+|++|++++. ++.+
T Consensus       254 ~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg~i  332 (388)
T d1erja_         254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGV  332 (388)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEE
T ss_pred             CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-CCEE
Confidence            678999999999999999999999999999876531             11267889999999999999998755 4588


Q ss_pred             eeeeeCCCCC--CccccccccccccceeeccCCceeEEE------ECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          303 GSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIA------WDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       303 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~------~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      ++|++.+...  .+.+              |.+.|.+++      |+|++++||+   ++.|   |+|+||+++
T Consensus       333 ~vwd~~~~~~~~~l~~--------------H~~~V~~~~~~~~~~~spd~~~l~s---~s~D---g~I~iW~~~  386 (388)
T d1erja_         333 LFWDKKSGNPLLMLQG--------------HRNSVISVAVANGSSLGPEYNVFAT---GSGD---CKARIWKYK  386 (388)
T ss_dssp             EEEETTTCCEEEEEEC--------------CSSCEEEEEECSSCTTCTTCEEEEE---EETT---SEEEEEEEE
T ss_pred             EEEECCCCcEEEEEeC--------------CCCCEEEEEEecCcccCCCCCEEEE---EeCC---CEEEEEeee
Confidence            8888776422  2222              334677776      5689999998   5666   779999985

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.1e-24  Score=197.89  Aligned_cols=282  Identities=9%  Similarity=0.031  Sum_probs=173.4

Q ss_pred             CCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCc-ceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEe
Q 014302           96 LLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKD-ACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWA  171 (427)
Q Consensus        96 ~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~  171 (427)
                      +++.|  .|++|+|+|++++||+|+.|++|+|||++..... ......+|...|.+++|+|++..+|++|+ ++.|++|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeee
Confidence            34444  7999999999999999999999999999876322 22333469999999999998767777764 59999999


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccC------------------ceEE
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLG------------------TPIR  233 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~------------------~~~~  233 (427)
                      +........                         ...+.........+.+++..+..+                  ....
T Consensus        86 ~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~  140 (342)
T d1yfqa_          86 LIGSPSFQA-------------------------LTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             SSSSSSEEE-------------------------CBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             ccccccccc-------------------------ccccccccccccccccccccccccccccccceeeccccccceeeec
Confidence            872211100                         011111111111122221111100                  0000


Q ss_pred             ---e--ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc----cCCCCeeEEEECC-CCCEEEEEEcCCceee
Q 014302          234 ---R--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS----STSGFVTGATWDP-EGRMILLAFAGSLTLG  303 (427)
Q Consensus       234 ---~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~----~~~~~v~~v~~sp-dg~~l~~~~~~~~~i~  303 (427)
                         .  .......+.+.+++..+++++.|+.|++||++........    .....+....+.+ ++..++++ +.++.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~dg~~~  219 (342)
T d1yfqa_         141 NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS-SIDGRVA  219 (342)
T ss_dssp             ESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE-ETTSEEE
T ss_pred             ccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEee-cCCCeEE
Confidence               0  1223456678889999999999999999999877753222    4445566666655 45566655 4555777


Q ss_pred             eeeeCCCCCCcccc---ccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeee
Q 014302          304 SIHFASKPPSLDAH---LLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGF  380 (427)
Q Consensus       304 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~  380 (427)
                      ++.+..........   .............+...|++++|+|++++||+   ++.|   |+|+|||+++++.+...+   
T Consensus       220 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~las---g~~D---g~v~vWD~~~~~~l~~~~---  290 (342)
T d1yfqa_         220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT---AGSD---GIISCWNLQTRKKIKNFA---  290 (342)
T ss_dssp             EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE---EETT---SCEEEEETTTTEEEEECC---
T ss_pred             EEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEE---ECCC---CEEEEEECCCCcEEEEec---
Confidence            77766542211110   00000000111223347899999999999999   6666   679999999887653221   


Q ss_pred             eeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          381 IRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       381 ~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                         ...  ....++|.|+   +.+|+++.+++.+..+..+
T Consensus       291 ---~~~--~~~~~~~s~~---~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         291 ---KFN--EDSVVKIACS---DNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ---CCS--SSEEEEEEEC---SSEEEEEEECTHHHHCSSS
T ss_pred             ---CCC--CCEEEEEEeC---CCEEEEEEcCCcEEEeeee
Confidence               111  1335667764   6789999999876665443

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-23  Score=192.35  Aligned_cols=282  Identities=13%  Similarity=0.129  Sum_probs=173.4

Q ss_pred             CCCC--c-eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEecc
Q 014302           97 LPEV--D-LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPS  173 (427)
Q Consensus        97 l~~~--~-V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~  173 (427)
                      |++|  . |+|++|  ++++||+|+.|++|+|||+.+.  +......+|.+.|++++|+|++ .+++++.|+.+++|++.
T Consensus         8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT--EEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETT
T ss_pred             ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC--cEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccc
Confidence            4555  3 466655  6889999999999999999877  5666667899999999999976 66666677999999986


Q ss_pred             CCCCccccccCcc-------------cccccccCCCCcceeEeehhcc--------------------cCCC--------
Q 014302          174 YPGNAASVRSGAA-------------SFLGALSRGPGTRWTLVDFLRS--------------------QNGE--------  212 (427)
Q Consensus       174 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~--------  212 (427)
                      .............             ..+.....++  .+.....-..                    ....        
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN--TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTS--EEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccceeeeecCCC--cEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            3221100000000             0000000110  1110000000                    0000        


Q ss_pred             ceeeeEeCCCCCCcc--------------cCce---EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccc
Q 014302          213 QITALSWGPDGRFPG--------------LGTP---IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWS  274 (427)
Q Consensus       213 ~v~~~~~spdg~~l~--------------~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~  274 (427)
                      ......+.++++++.              .+..   ...+...+.++.|+|++.++++++.|+.|++||++++... .+.
T Consensus       161 ~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         161 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             cccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccc
Confidence            000112222333321              1111   2235567888999999999999999999999999988774 444


Q ss_pred             cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE-EECCCCCEEEEEEec
Q 014302          275 STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI-AWDASGERLAVSYKG  353 (427)
Q Consensus       275 ~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v-~~sp~g~~La~~~~~  353 (427)
                      .|...|.+++|++  ++|++++ .++.+++|++.+....+..|.              ..+..+ .+++++++|++   +
T Consensus       241 ~h~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~---g  300 (355)
T d1nexb2         241 GHTALVGLLRLSD--KFLVSAA-ADGSIRGWDANDYSRKFSYHH--------------TNLSAITTFYVSDNILVS---G  300 (355)
T ss_dssp             CCSSCCCEEEECS--SEEEEEC-TTSEEEEEETTTCCEEEEEEC--------------TTCCCCCEEEECSSEEEE---E
T ss_pred             ccccccccccccc--ceeeeee-cccccccccccccceeccccc--------------CCceEEEEEcCCCCEEEE---E
Confidence            8899999999974  6787764 555888888776533332222              233443 56788888776   3


Q ss_pred             CCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          354 GDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      + |   ++|+|||+++++++...    +.+  ......+++|.|+    .+++.+..||++.++-+
T Consensus       301 ~-d---~~i~vwd~~tg~~~~~~----~~~--~~~~V~~v~~~~~----~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         301 S-E---NQFNIYNLRSGKLVHAN----ILK--DADQIWSVNFKGK----TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             E-T---TEEEEEETTTCCBCCSC----TTT--TCSEEEEEEEETT----EEEEEEESSSCEEEEEE
T ss_pred             e-C---CEEEEEECCCCCEEEEE----ecC--CCCCEEEEEEcCC----eEEEEEECCCcEEEEEE
Confidence            3 3   56999999998865221    111  2223568889874    36777778998665543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.8e-23  Score=183.81  Aligned_cols=249  Identities=12%  Similarity=0.059  Sum_probs=167.1

Q ss_pred             CCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccC
Q 014302           97 LPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSY  174 (427)
Q Consensus        97 l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~  174 (427)
                      +.+|  .|++++|+|    |++|+.||+|++||+...       ...|...|.+++|++++ .+++++.|+++++|++..
T Consensus         9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-------~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~   76 (287)
T d1pgua2           9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-------HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITK   76 (287)
T ss_dssp             ECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-------ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEE
T ss_pred             ECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-------CCCCCCCEEEEEecCCC-eEEEEeeccccccccccc
Confidence            4566  899999998    999999999999987643       24788899999999876 677777889999999861


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-------------cCceEEeccCCeEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-------------LGTPIRRGFGGLSI  241 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-------------~~~~~~~~~~~v~~  241 (427)
                               .                   .     ....+..+++++++..+.             .+..+.........
T Consensus        77 ---------~-------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (287)
T d1pgua2          77 ---------H-------------------E-----FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPG  123 (287)
T ss_dssp             ---------E-------------------E-----CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred             ---------c-------------------c-----cccceeeeeeccCCceEEEeecccceeeeccceeeeeecccccee
Confidence                     0                   0     012233444444443311             11122222223345


Q ss_pred             EEEccCCCEEEEEecCC-cEEEEEcCCCCccc--cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccc
Q 014302          242 LKWSPTGDYFFAAKFDG-TFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHL  318 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg-~v~iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  318 (427)
                      .++++++..+++++.++ .|++|++...+...  ...+...+.+++|+|+|++|++++.+ +.+++|++.+.....    
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~d-g~i~i~d~~~~~~~~----  198 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVM-GKILLYDLQSREVKT----  198 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETT-SCEEEEETTTTEEEE----
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccc-ccccceeeccccccc----
Confidence            66788899998777765 79999987655422  22577889999999999999987654 478888876642100    


Q ss_pred             cccccccceeeccCCceeEEEECCC----------CCEEEEEEecCCCcceeEEEEEEeccCc-eEEEeeeeeeeCCCCC
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDAS----------GERLAVSYKGGDDIYKGLIAIYDARRTP-LISLSLIGFIRGPGDN  387 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp~----------g~~La~~~~~~~d~~~g~i~vwd~~~~~-~~~~~~~~~~~~~~~~  387 (427)
                             .....+...|.+++|+|+          +.+||+   ++.|   ++|+|||++... ++.     ...+..  
T Consensus       199 -------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~s---gs~D---~~i~iw~~~~~~~~~~-----~~~~h~--  258 (287)
T d1pgua2         199 -------SRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT---GSLD---TNIFIYSVKRPMKIIK-----ALNAHK--  258 (287)
T ss_dssp             -------CCSCCCSSCEEEEEECCCC------CCSCCEEEE---EETT---SCEEEEESSCTTCCEE-----ETTSST--
T ss_pred             -------ccccccccccceeeecccccccccccCCCCeeEe---ecCC---CeEEEEECCCCCeEEE-----EeCCCC--
Confidence                   001123447899999875          467877   6666   669999997643 331     222222  


Q ss_pred             CCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          388 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       388 ~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ....+++|+|+   +.++++| .||.|.+|++
T Consensus       259 ~~V~~v~~~~~---~~l~s~g-~D~~v~iW~i  286 (287)
T d1pgua2         259 DGVNNLLWETP---STLVSSG-ADACIKRWNV  286 (287)
T ss_dssp             TCEEEEEEEET---TEEEEEE-TTSCEEEEEE
T ss_pred             CCeEEEEECCC---CEEEEEE-CCCeEEEEEE
Confidence            23668899985   4555544 7999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-22  Score=182.63  Aligned_cols=289  Identities=10%  Similarity=0.066  Sum_probs=170.8

Q ss_pred             CCCCCC--ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEec
Q 014302           95 HLLPEV--DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAP  172 (427)
Q Consensus        95 ~~l~~~--~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~  172 (427)
                      .+|++|  .|.+ +++++|++||+|+.|++|+|||+.++  +......+|...|.+++|+|+  .+++++.++.+++|+.
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~--~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC--CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC--CEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence            345667  4644 36668999999999999999999877  566667789999999999975  4556667799999998


Q ss_pred             cCCCCccccccCcccccccc--------cCCCCcceeEee--------hhcccCCCceeeeEeCCCCCCcc---------
Q 014302          173 SYPGNAASVRSGAASFLGAL--------SRGPGTRWTLVD--------FLRSQNGEQITALSWGPDGRFPG---------  227 (427)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--------~~~~~~~~~v~~~~~spdg~~l~---------  227 (427)
                      .............. .....        ............        .+... ...  ...+.+....+.         
T Consensus        85 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          85 ETGECIHTLYGHTS-TVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAA--VRCVQYDGRRVVSGAYDFMVK  160 (342)
T ss_dssp             TTTEEEEEECCCSS-CEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC-SSC--EEEEEECSSCEEEEETTSCEE
T ss_pred             ccccceecccccce-eEeeeecccccccccccceeEEEeecccccceeeeecc-ccc--ceeeccccceeeeecCCCeEE
Confidence            62211100000000 00000        000000000000        00000 000  011111111111         


Q ss_pred             -----cCceEEe-ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          228 -----LGTPIRR-GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       228 -----~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                           ....+.. .........+++++.+|++++.||.|++||++..+.. ....|...+.++++++  ++|++++ .++
T Consensus       161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s-~d~  237 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGN-ADS  237 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEE-TTS
T ss_pred             EeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEc-CCC
Confidence                 0111111 1123344556778999999999999999999988774 3447888888887764  6887765 455


Q ss_pred             eeeeeeeCCCCC--CccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeee
Q 014302          301 TLGSIHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLI  378 (427)
Q Consensus       301 ~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~  378 (427)
                      .+++|++.....  .+..+           ..+...+.++.++  ++++++   ++.|   |+|+|||+++++++...+.
T Consensus       238 ~i~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~--~~~~~s---~s~D---g~i~iwd~~tg~~i~~~~~  298 (342)
T d2ovrb2         238 TVKIWDIKTGQCLQTLQGP-----------NKHQSAVTCLQFN--KNFVIT---SSDD---GTVKLWDLKTGEFIRNLVT  298 (342)
T ss_dssp             CEEEEETTTCCEEEEECST-----------TSCSSCEEEEEEC--SSEEEE---EETT---SEEEEEETTTCCEEEEEEE
T ss_pred             EEEEEeccccccccccccc-----------ceeeeceeecccC--CCeeEE---EcCC---CEEEEEECCCCCEEEEEec
Confidence            888888766421  11111           1122356666665  468887   5566   7799999999887643321


Q ss_pred             eeeeCCCCCCCceeEEeccCCCCCceeEEEeeCc----eEEEEec
Q 014302          379 GFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSG----FCCTYPL  419 (427)
Q Consensus       379 ~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g----~i~~~~~  419 (427)
                      ..  .........+++|.|+   +.+|++|..||    +|.+|+|
T Consensus       299 ~~--~~~~~~~v~~v~~s~~---~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         299 LE--SGGSGGVVWRIRASNT---KLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             CT--TGGGTCEEEEEEECSS---EEEEEEECSSSSSCCEEEEEEC
T ss_pred             cc--CCCCCCCEEEEEECCC---CCEEEEEeCCCCCeeEEEEEeC
Confidence            11  1112223558899885   78999999888    4888887

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.1e-23  Score=190.03  Aligned_cols=221  Identities=12%  Similarity=0.082  Sum_probs=151.3

Q ss_pred             ceeeeEEcC--CCCEEEEEeCCCeEEEEEccCCCCcc------eeeccCCcCCeeEEEEccCCCceEEEec--CCeEEEE
Q 014302          101 DLQGVSWHQ--HKHIVAFISGSTQVIVRDYEDSGKDA------CILTSDSQRDVKVLEWRPNGGRSLSVGC--KGGICIW  170 (427)
Q Consensus       101 ~V~~l~~sp--~g~~lat~~~d~~v~vwd~~~~~~~~------~~~~~~~~~~v~~l~~sp~~~~~la~g~--~~~i~iw  170 (427)
                      .|++++|+|  ++++||+|+.||+|+|||+.......      ......|...|.+++|++++..+++++.  ++.+.+|
T Consensus        65 ~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~  144 (325)
T d1pgua1          65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFI  144 (325)
T ss_dssp             CEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             CEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEE
Confidence            699999998  56799999999999999997652111      1123457889999999999966655554  3678899


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCc-ccCc----e--------------
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFP-GLGT----P--------------  231 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-~~~~----~--------------  231 (427)
                      +.+         ++                .++..+..| ...|++++|+|++..+ .++.    .              
T Consensus       145 ~~~---------~~----------------~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~  198 (325)
T d1pgua1         145 SWD---------SG----------------NSLGEVSGH-SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD  198 (325)
T ss_dssp             ETT---------TC----------------CEEEECCSC-SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE
T ss_pred             eec---------cc----------------ccceeeeec-ccccccccccccccceEEEeecccccccccccccccceec
Confidence            887         11                344445555 7889999999988762 2110    0              


Q ss_pred             --EEeccCCeEEEEEccC-CCEEEEEecCCcEEEEEcCCCCcc-ccccCCCCeeEEEEC---CCCCEEEEEEcCCceeee
Q 014302          232 --IRRGFGGLSILKWSPT-GDYFFAAKFDGTFYLWETNTWTSE-PWSSTSGFVTGATWD---PEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       232 --~~~~~~~v~~~~~sp~-g~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~v~~v~~s---pdg~~l~~~~~~~~~i~~  304 (427)
                        ...|...|.+++|+|+ +++|++++.|+.|++||+++++.. .+..|...+..+.|+   |||++|++++ .++.+++
T Consensus       199 ~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s-~D~~i~i  277 (325)
T d1pgua1         199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADATIRV  277 (325)
T ss_dssp             CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEE-TTSEEEE
T ss_pred             ccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEe-CCCeEEE
Confidence              1124567999999997 578889999999999999988874 334566666655555   6899998876 4458888


Q ss_pred             eeeCCCCC--CccccccccccccceeeccCCcee--EEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          305 IHFASKPP--SLDAHLLPVDLPDIVSLTGSQGIE--KIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       305 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~--~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      |++.....  .+..+..            ...+.  ++.|.+++ +|++   ++.|   |+|++||+
T Consensus       278 wd~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~l~s---~s~d---g~i~vwdl  325 (325)
T d1pgua1         278 WDVTTSKCVQKWTLDKQ------------QLGNQQVGVVATGNG-RIIS---LSLD---GTLNFYEL  325 (325)
T ss_dssp             EETTTTEEEEEEECCTT------------CGGGCEEEEEEEETT-EEEE---EETT---SCEEEEET
T ss_pred             EECCCCCEEEEEEecCC------------cccCeEEEEEECCCC-EEEE---EECC---CEEEEEEC
Confidence            88776421  1111111            01233  44444443 6666   5555   66999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.5e-22  Score=180.18  Aligned_cols=214  Identities=14%  Similarity=0.237  Sum_probs=159.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .+.++.|+|+++.|++++.|+.+++|++...  ........|...+.+++|+|++..+++++.++.+++|++.       
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~-------  173 (317)
T d1vyhc1         103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-------  173 (317)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-------
T ss_pred             cceeeeccCCCceEEeeccCcceeEeecccc--eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeec-------
Confidence            7899999999999999999999999999877  4555566788999999999999444444566999999987       


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                                        .......+..+ ...+.+++|+|++.......     ........+...+.++++++.|+.|
T Consensus       174 ------------------~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~i  229 (317)
T d1vyhc1         174 ------------------TKECKAELREH-RHVVECISWAPESSYSSISE-----ATGSETKKSGKPGPFLLSGSRDKTI  229 (317)
T ss_dssp             ------------------TCCEEEEECCC-SSCEEEEEECCSCGGGGGGG-----CCSCC-------CCEEEEEETTSEE
T ss_pred             ------------------cceeeEEEecC-CCCceEEEEeeccccceeec-----cccceeeeeccCCceeEeccCCCEE
Confidence                              11233344444 67789999999876544211     1223344456678899999999999


Q ss_pred             EEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEE
Q 014302          261 YLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA  339 (427)
Q Consensus       261 ~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  339 (427)
                      ++||+++++.. .+..|...|.+++|+|++++|++++. ++.+++|++.+....            .....+.+.|++++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~------------~~~~~h~~~V~~~~  296 (317)
T d1vyhc1         230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRCM------------KTLNAHEHFVTSLD  296 (317)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEET-TTEEEEECCTTSCCC------------EEEECCSSCEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEEC-CCeEEEEECCCCcEE------------EEEcCCCCCEEEEE
Confidence            99999988773 44588999999999999999998754 458888887664211            01112345899999


Q ss_pred             ECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          340 WDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       340 ~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                      |+|++++||+   ++.|   |+|+|||
T Consensus       297 ~s~~~~~l~s---~s~D---g~i~iWd  317 (317)
T d1vyhc1         297 FHKTAPYVVT---GSVD---QTVKVWE  317 (317)
T ss_dssp             ECSSSSCEEE---EETT---SEEEEEC
T ss_pred             EcCCCCEEEE---EeCC---CeEEEeC
Confidence            9999999998   5666   7799997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=4.5e-22  Score=178.47  Aligned_cols=218  Identities=12%  Similarity=0.207  Sum_probs=157.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC-cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK-DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~  179 (427)
                      .|++++|+|+|+++ +++.|+.+++|+...... ........+...+.+++|+|++ .+++++.++.+.+|+..      
T Consensus        57 ~v~~v~~~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-~~~~~~~~~~i~~~~~~------  128 (299)
T d1nr0a2          57 MITGIKTTSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAACYKHIAIYSHG------  128 (299)
T ss_dssp             CEEEEEECTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEEESSEEEEEETT------
T ss_pred             cEEEEEeeccceee-cccceeeEEEeccCCcccccccccccccccccccccccccc-ccccccccccccccccc------
Confidence            79999999999765 556799999999876521 1223334577789999999999 68888888999999875      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce------------------EEeccCCeEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP------------------IRRGFGGLSI  241 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------------------~~~~~~~v~~  241 (427)
                                           ......   ....+.+++|+|++++++.+..                  ...|...|.+
T Consensus       129 ---------------------~~~~~~---~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~  184 (299)
T d1nr0a2         129 ---------------------KLTEVP---ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS  184 (299)
T ss_dssp             ---------------------EEEEEE---CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEE
T ss_pred             ---------------------cccccc---cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                 111111   2445778999999988653311                  2236788999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCcc----ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE----PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAH  317 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~  317 (427)
                      ++|+|++++|++++.|+.|++||+.+....    .+..|...|.+++|+|++++|++++. ++.+++|++.......   
T Consensus       185 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~-dg~i~iwd~~~~~~~~---  260 (299)
T d1nr0a2         185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-DNSVIVWNMNKPSDHP---  260 (299)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTCTTSCC---
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcC-CCEEEEEECCCCCcce---
Confidence            999999999999999999999999876542    33368899999999999999998755 4588888876642110   


Q ss_pred             ccccccccceeec-cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          318 LLPVDLPDIVSLT-GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       318 ~~~~~~~~~~~~~-~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                         .    ..... ....|..+.| +++++|++   ++.|   ++|++||+.
T Consensus       261 ---~----~~~~~~~~~~v~~~~~-~~~~~l~s---~s~D---~~i~iWdl~  298 (299)
T d1nr0a2         261 ---I----IIKGAHAMSSVNSVIW-LNETTIVS---AGQD---SNIKFWNVP  298 (299)
T ss_dssp             ---E----EETTSSTTSCEEEEEE-EETTEEEE---EETT---SCEEEEECC
T ss_pred             ---E----EEecCCCCCcEEEEEE-CCCCEEEE---EeCC---CEEEEEecc
Confidence               0    00011 1225666655 56788888   4556   669999984

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.9e-21  Score=180.54  Aligned_cols=131  Identities=17%  Similarity=0.183  Sum_probs=92.3

Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc-------ccccCCCCeeEEEECCCCCEEEEEEcCC--ceeeeee
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE-------PWSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIH  306 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~-------~~~~~~~~v~~v~~spdg~~l~~~~~~~--~~i~~~~  306 (427)
                      ...+.+++|+|++ +|++|+.|++|+|||+++++..       ....|...|.+++|+|||++|++++.+.  +.+++|+
T Consensus       184 ~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd  262 (393)
T d1sq9a_         184 SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYE  262 (393)
T ss_dssp             CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred             CCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecc
Confidence            3457899999998 8889999999999999987652       2237899999999999999999886555  2355555


Q ss_pred             eCCCCC--Cccccccccccccc-eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          307 FASKPP--SLDAHLLPVDLPDI-VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       307 ~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      +.....  .+.....  ..... ....|.+.|++++|+||+++||+   ++.|   ++|+|||+++++++..
T Consensus       263 ~~~g~~~~~l~~~~~--~~~~~~~~~gH~~~V~~l~fspd~~~l~S---~s~D---~~v~vWd~~~g~~~~~  326 (393)
T d1sq9a_         263 TEFGERIGSLSVPTH--SSQASLGEFAHSSWVMSLSFNDSGETLCS---AGWD---GKLRFWDVKTKERITT  326 (393)
T ss_dssp             TTTCCEEEEECBC----------CCBSBSSCEEEEEECSSSSEEEE---EETT---SEEEEEETTTTEEEEE
T ss_pred             cccceeeeeeccccc--cccceeeeecccCceeeeccCCCCCeeEE---ECCC---CEEEEEECCCCCEEEE
Confidence            444311  1110000  00011 11235568999999999999999   6666   7799999999887644

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=1e-20  Score=171.91  Aligned_cols=218  Identities=11%  Similarity=0.143  Sum_probs=154.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCC--cceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGK--DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~  178 (427)
                      .|++++|+|++.+|++|+.|+.+++|+......  .......+|........+..+. .+.....+.....|.....   
T Consensus        99 ~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---  174 (340)
T d1tbga_          99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETG---  174 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT-EEEEEETTTEEEEEETTTT---
T ss_pred             cEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccc-ccccccccccccccccccc---
Confidence            799999999999999999999999999876622  2233345576666666666554 5666667777777766510   


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc--------------Cc---eEEeccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL--------------GT---PIRRGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--------------~~---~~~~~~~~v~~  241 (427)
                                            ........ ....+....+.+.+.++..              +.   .+..|...|.+
T Consensus       175 ----------------------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~  231 (340)
T d1tbga_         175 ----------------------QQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINA  231 (340)
T ss_dssp             ----------------------EEEEEEEC-CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ----------------------cccccccc-cceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEE
Confidence                                  11111111 1344455555555444221              11   23457889999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCcccc---ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccc
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW---SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDA  316 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~---~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~  316 (427)
                      ++|+|++++|++++.|+.|++||++.......   ..+...+.+++|+|++++|++++. ++.+++|++.+...  .+.+
T Consensus       232 v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~~~  310 (340)
T d1tbga_         232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVLAG  310 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEET-TSCEEEEETTTCCEEEEECC
T ss_pred             EEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEEC-CCEEEEEECCCCcEEEEEcC
Confidence            99999999999999999999999988776332   266778999999999999998754 45888888765421  1122


Q ss_pred             cccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          317 HLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                                    |.+.|++++|+|++++||+   ++.|   |+|+|||
T Consensus       311 --------------H~~~V~~l~~s~d~~~l~s---~s~D---g~v~iWd  340 (340)
T d1tbga_         311 --------------HDNRVSCLGVTDDGMAVAT---GSWD---SFLKIWN  340 (340)
T ss_dssp             --------------CSSCEEEEEECTTSSCEEE---EETT---SCEEEEC
T ss_pred             --------------CCCCEEEEEEeCCCCEEEE---EccC---CEEEEeC
Confidence                          3458999999999999998   5666   6699997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=2.5e-21  Score=177.73  Aligned_cols=268  Identities=11%  Similarity=0.087  Sum_probs=175.0

Q ss_pred             eeeEEcC-CCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC--CeEEEEeccCCCCcc
Q 014302          103 QGVSWHQ-HKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK--GGICIWAPSYPGNAA  179 (427)
Q Consensus       103 ~~l~~sp-~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~--~~i~iw~~~~~~~~~  179 (427)
                      .+-.||| ||+++|+++ ++.|+|||...+  ....  ..|...|.+++|+|||+.+++++.+  ..+++|++.      
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~--~~~~--~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~------   74 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGT--YVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR------   74 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSS--BEEE--CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT------
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCC--cEEE--ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC------
Confidence            4567999 999999986 579999998765  3333  3688899999999999666666655  368899987      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----------------eEEeccCCeEEE
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----------------PIRRGFGGLSIL  242 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~v~~~  242 (427)
                         ++              .   ...+..+ ...+.+++|+|||++++.+.                 .+..+...+.++
T Consensus        75 ---~~--------------~---~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (360)
T d1k32a3          75 ---TG--------------K---AEKFEEN-LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  133 (360)
T ss_dssp             ---TC--------------C---EEECCCC-CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             ---CC--------------c---EEEeeCC-CceEEeeeecccccccceeccccccccccccccceeeeeecccccccch
Confidence               11              1   1223334 77899999999999865321                 233466788899


Q ss_pred             EEccCCCEEEEEe----------cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC
Q 014302          243 KWSPTGDYFFAAK----------FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP  312 (427)
Q Consensus       243 ~~sp~g~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~  312 (427)
                      +|+|||++|+.+.          .++.+++||+.+++......+...+..++|+|||++|++++.+. .+..|+......
T Consensus       134 ~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~-~~~~~d~~~~~~  212 (360)
T d1k32a3         134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS-LDPSPDRVVLNF  212 (360)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC-CCCEECSSSSCE
T ss_pred             hhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeCCC-ceEcccccccce
Confidence            9999999999543          23458999999887776667888899999999999999876544 554554322100


Q ss_pred             C----cc-------------------ccccc---cccc----cceee-ccCCceeEEEECCCCCEEEEEE----------
Q 014302          313 S----LD-------------------AHLLP---VDLP----DIVSL-TGSQGIEKIAWDASGERLAVSY----------  351 (427)
Q Consensus       313 ~----~~-------------------~~~~~---~~~~----~~~~~-~~~~~i~~v~~sp~g~~La~~~----------  351 (427)
                      .    ..                   +....   ....    ....+ ...+....+...+++...+...          
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (360)
T d1k32a3         213 SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ  292 (360)
T ss_dssp             ECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHH
T ss_pred             eeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEE
Confidence            0    00                   00000   0000    00000 0112334444444433332211          


Q ss_pred             ecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEecc
Q 014302          352 KGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       352 ~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      .++.+   +.|++||+.+++.....  +.         ...++|.|+   |..|+++..||.|.+|++-
T Consensus       293 ~~~~~---~~i~~~d~~~~~~~~~~--~~---------v~~~~~SpD---G~~l~~~~~Dg~i~v~d~~  344 (360)
T d1k32a3         293 GAPEK---GVLLKYDVKTRKVTEVK--NN---------LTDLRLSAD---RKTVMVRKDDGKIYTFPLE  344 (360)
T ss_dssp             CCCCC---EEEEEEETTTCCEEEEE--EE---------EEEEEECTT---SCEEEEEETTSCEEEEESS
T ss_pred             ecCCC---CEEEEEECCCCeEEEec--CC---------cCEEEECCC---CCEEEEEECCCeEEEEECC
Confidence            13334   78999999987764321  11         337889886   8889999999999999873

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.84  E-value=5.9e-20  Score=168.40  Aligned_cols=239  Identities=11%  Similarity=0.038  Sum_probs=148.7

Q ss_pred             CCceeeeEEcCCCCEEEEEeCCC--eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCC
Q 014302           99 EVDLQGVSWHQHKHIVAFISGST--QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPG  176 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~  176 (427)
                      ...|++++|+|||++|++++.+.  .|++||+..+   .......|...|.+++|+|++..+++++.++.+.+|++.   
T Consensus        42 ~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~---  115 (360)
T d1k32a3          42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG---KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE---  115 (360)
T ss_dssp             CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC---CEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT---
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC---cEEEeeCCCceEEeeeecccccccceecccccccccccc---
Confidence            44799999999999998876553  7899999876   334456788999999999999655556667899999997   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc------------------------e-
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT------------------------P-  231 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~------------------------~-  231 (427)
                            .+                .....+..+ ...+.+++|+|||++++...                        . 
T Consensus       116 ------~~----------------~~~~~~~~~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~  172 (360)
T d1k32a3         116 ------TG----------------KPTVIERSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF  172 (360)
T ss_dssp             ------TC----------------CEEEEEECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred             ------cc----------------ceeeeeecc-cccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee
Confidence                  11                223333333 66788999999999864110                        0 


Q ss_pred             -EEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcc--------ccccCCCCeeEEEECCCCCEEEEEEcCC---
Q 014302          232 -IRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSE--------PWSSTSGFVTGATWDPEGRMILLAFAGS---  299 (427)
Q Consensus       232 -~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--------~~~~~~~~v~~v~~spdg~~l~~~~~~~---  299 (427)
                       +..+...+..++|+|||++|++++.++.+++||.......        ....+...+..+.|+++++.++.+....   
T Consensus       173 ~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  252 (360)
T d1k32a3         173 AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM  252 (360)
T ss_dssp             ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTG
T ss_pred             eecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeeccc
Confidence             1124456788999999999999999999999987654321        0112333333444555444332211100   


Q ss_pred             -ceeeeeeeCCCC----------------------------CCccccccccccccceeeccCCceeEEEECCCCCEEEEE
Q 014302          300 -LTLGSIHFASKP----------------------------PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVS  350 (427)
Q Consensus       300 -~~i~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~  350 (427)
                       ..+..+.+....                            ....+....+++.......+.+.|.+++|||||++|++ 
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~-  331 (360)
T d1k32a3         253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMV-  331 (360)
T ss_dssp             GGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEE-
T ss_pred             ccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEE-
Confidence             001111000000                            00001111111111122223347899999999999999 


Q ss_pred             EecCCCcceeEEEEEEeccCce
Q 014302          351 YKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       351 ~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                        ++.|   |.|++||++.++.
T Consensus       332 --~~~D---g~i~v~d~~~~~~  348 (360)
T d1k32a3         332 --RKDD---GKIYTFPLEKPED  348 (360)
T ss_dssp             --EETT---SCEEEEESSCTTS
T ss_pred             --EECC---CeEEEEECCCCCc
Confidence              4555   6699999988764

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.4e-19  Score=155.41  Aligned_cols=271  Identities=10%  Similarity=0.092  Sum_probs=154.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|+|++  ++|++||+|+.|++|+|||+.+.  +......+|...|++++|+  +..+++++.|+.+++|++........
T Consensus        17 ~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~--~~~~~l~~H~~~V~~v~~~--~~~l~s~s~D~~i~~~~~~~~~~~~~   90 (293)
T d1p22a2          17 GVYCLQ--YDDQKIVSGLRDNTIKIWDKNTL--ECKRILTGHTGSVLCLQYD--ERVIITGSSDSTVRVWDVNTGEMLNT   90 (293)
T ss_dssp             CEEEEE--CCSSEEEEEESSSCEEEEESSSC--CEEEEECCCSSCEEEEECC--SSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             CEEEEE--EcCCEEEEEeCCCeEEEEECCCC--cEEEEEecCCCCEeeeecc--cceeeccccccccccccccccccccc
Confidence            678765  57999999999999999999877  5666667899999999884  53444445669999999872111000


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCC-cccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRF-PGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                      ...... .......... .  ...   ......  ...|...... .........|...+..+.+  ....+++++.|+.
T Consensus        91 ~~~~~~-~~~~~~~~~~-~--~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~d~~  159 (293)
T d1p22a2          91 LIHHCE-AVLHLRFNNG-M--MVT---CSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT  159 (293)
T ss_dssp             ECCCCS-CEEEEECCTT-E--EEE---EETTSC--EEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred             cccccc-cccccccccc-c--eee---cccccc--eeEeecccccccccccccccccccccccee--cccccccccCCCc
Confidence            000000 0000000000 0  000   000000  0111110000 0001112335556665555  4567888999999


Q ss_pred             EEEEEcCCCCcc-ccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          260 FYLWETNTWTSE-PWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       260 v~iwd~~~~~~~-~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      |++||+++.+.. .+..+...+..+.++  +.++++++. ++.+++|++.......            ....+...+.  
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-dg~i~i~d~~~~~~~~------------~~~~~~~~v~--  222 (293)
T d1p22a2         160 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS-DNTIRLWDIECGACLR------------VLEGHEELVR--  222 (293)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET-TSCEEEEETTTCCEEE------------EECCCSSCEE--
T ss_pred             eeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC-CCEEEEEecccceeee------------eecccceeee--
Confidence            999999988764 344677777777775  567777654 4588888776642110            0001112344  


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE----eeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceE
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL----SLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFC  414 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i  414 (427)
                      .+++++.+|++   ++.|   |.|++||+........    .+...+.+....  ..+++|++     ..|+.|..||.|
T Consensus       223 ~~~~~~~~l~s---g~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~--V~~v~~d~-----~~l~s~s~Dg~i  289 (293)
T d1p22a2         223 CIRFDNKRIVS---GAYD---GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR--VFRLQFDE-----FQIVSSSHDDTI  289 (293)
T ss_dssp             EEECCSSEEEE---EETT---SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC--CCCEEECS-----SCEEECCSSSEE
T ss_pred             eccccceEEEE---EcCC---CEEEEEECCCCccccccCCceeeEEecCCCCC--EEEEEEcC-----CEEEEEecCCEE
Confidence            45677889988   5556   6699999865322110    011222333222  45788854     357788899999


Q ss_pred             EEEe
Q 014302          415 CTYP  418 (427)
Q Consensus       415 ~~~~  418 (427)
                      .+|+
T Consensus       290 ~iWD  293 (293)
T d1p22a2         290 LIWD  293 (293)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=6.2e-17  Score=144.10  Aligned_cols=248  Identities=15%  Similarity=0.142  Sum_probs=171.0

Q ss_pred             EEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCccccccccc
Q 014302          115 AFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGALS  193 (427)
Q Consensus       115 at~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  193 (427)
                      ++++.|++|.|||++++  +..... .....+..++|+|||+++++++. ++.|.+||+.         ++         
T Consensus         6 V~~~~~~~v~v~D~~t~--~~~~~i-~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~---------t~---------   64 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN--KVTATI-PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA---------TN---------   64 (301)
T ss_dssp             EEETTTTEEEEEETTTT--EEEEEE-ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT---------TT---------
T ss_pred             EEECCCCEEEEEECCCC--eEEEEE-ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECC---------CC---------
Confidence            45678999999999887  333222 33356789999999966655554 4899999997         11         


Q ss_pred             CCCCcceeEeehhcccCCCceeeeEeCCCCCCcc---------------cCceEE--eccCCeEEEEEccCCCEEE-EEe
Q 014302          194 RGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG---------------LGTPIR--RGFGGLSILKWSPTGDYFF-AAK  255 (427)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~---------------~~~~~~--~~~~~v~~~~~sp~g~~l~-~~~  255 (427)
                             ..+..+..  ...+..++|++++..+.               .+....  .+.....++.|+|+|+.++ ++.
T Consensus        65 -------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~  135 (301)
T d1l0qa2          65 -------NVIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN  135 (301)
T ss_dssp             -------EEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET
T ss_pred             -------ceeeeeec--cccccccccccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeec
Confidence                   23333332  23457788888887532               111111  2445678899999999887 666


Q ss_pred             cCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCce
Q 014302          256 FDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGI  335 (427)
Q Consensus       256 ~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  335 (427)
                      .++.+.+|+..+........+...+..++|+|+++.++++..+...+..+.......             .........+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~  202 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-------------IDTVKVEAAP  202 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-------------EEEEECSSEE
T ss_pred             cccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceee-------------eecccccCCc
Confidence            788899999998887666666677899999999999998877665554444333210             1112233467


Q ss_pred             eEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc-eeEEEeeCceE
Q 014302          336 EKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP-LLSVCWSSGFC  414 (427)
Q Consensus       336 ~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~-~l~v~~~~g~i  414 (427)
                      ..++|+++++.++++..+..+   ++|++||+.+++++...+.+        ..+.+++|.|+   |. ++..+..+|.|
T Consensus       203 ~~~~~~~~g~~~~v~~~~~~~---~~v~v~D~~t~~~~~~~~~~--------~~~~~va~spd---g~~l~va~~~~~~i  268 (301)
T d1l0qa2         203 SGIAVNPEGTKAYVTNVDKYF---NTVSMIDTGTNKITARIPVG--------PDPAGIAVTPD---GKKVYVALSFCNTV  268 (301)
T ss_dssp             EEEEECTTSSEEEEEEECSSC---CEEEEEETTTTEEEEEEECC--------SSEEEEEECTT---SSEEEEEETTTTEE
T ss_pred             ceeecccccccccccccccee---eeeeeeecCCCeEEEEEcCC--------CCEEEEEEeCC---CCEEEEEECCCCeE
Confidence            889999999999886555544   67999999998776432211        23678999987   55 45667779999


Q ss_pred             EEEec
Q 014302          415 CTYPL  419 (427)
Q Consensus       415 ~~~~~  419 (427)
                      .+|++
T Consensus       269 ~v~D~  273 (301)
T d1l0qa2         269 SVIDT  273 (301)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            99985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=6.5e-18  Score=157.41  Aligned_cols=174  Identities=14%  Similarity=0.139  Sum_probs=122.6

Q ss_pred             CceeeeEEcCCC-----CEEEEEeCCCeEEEEEccCCCCc----------------ceeeccCCcCCeeEEEEccCCCce
Q 014302          100 VDLQGVSWHQHK-----HIVAFISGSTQVIVRDYEDSGKD----------------ACILTSDSQRDVKVLEWRPNGGRS  158 (427)
Q Consensus       100 ~~V~~l~~sp~g-----~~lat~~~d~~v~vwd~~~~~~~----------------~~~~~~~~~~~v~~l~~sp~~~~~  158 (427)
                      +.+.+++|.+++     .++++++.|+++++|++......                .......+...+++++|+|++  +
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~  197 (393)
T d1sq9a_         120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--L  197 (393)
T ss_dssp             SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--E
T ss_pred             CceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--E
Confidence            367788887764     58899999999999998643110                011112355668999999997  5


Q ss_pred             EEEe-cCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccC
Q 014302          159 LSVG-CKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFG  237 (427)
Q Consensus       159 la~g-~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~  237 (427)
                      |++| .|+.|+|||+.         ++                ..+..+..                    ...+..|..
T Consensus       198 lasgs~Dg~i~iwd~~---------~~----------------~~~~~~~~--------------------~~~l~~h~~  232 (393)
T d1sq9a_         198 IATGFNNGTVQISELS---------TL----------------RPLYNFES--------------------QHSMINNSN  232 (393)
T ss_dssp             EEEECTTSEEEEEETT---------TT----------------EEEEEEEC--------------------CC---CCCC
T ss_pred             EEEEeCCCcEEEEeec---------cc----------------cccccccc--------------------ccccccccc
Confidence            5555 55999999997         11                11111111                    113455788


Q ss_pred             CeEEEEEccCCCEEEEEecCCc---EEEEEcCCCCccc--------------cccCCCCeeEEEECCCCCEEEEEEcCCc
Q 014302          238 GLSILKWSPTGDYFFAAKFDGT---FYLWETNTWTSEP--------------WSSTSGFVTGATWDPEGRMILLAFAGSL  300 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~---v~iwd~~~~~~~~--------------~~~~~~~v~~v~~spdg~~l~~~~~~~~  300 (427)
                      .|.+++|+|||++|++|+.|++   |++||+++++...              ..+|...|.+++|+|||++|++++ .++
T Consensus       233 ~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s-~D~  311 (393)
T d1sq9a_         233 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-WDG  311 (393)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-TTS
T ss_pred             eEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC-CCC
Confidence            9999999999999999999875   8999998876421              126999999999999999999765 555


Q ss_pred             eeeeeeeCCCCC--Ccccccccc
Q 014302          301 TLGSIHFASKPP--SLDAHLLPV  321 (427)
Q Consensus       301 ~i~~~~~~~~~~--~~~~~~~~~  321 (427)
                      .+++|++.....  .+.+|...+
T Consensus       312 ~v~vWd~~~g~~~~~l~gH~~~v  334 (393)
T d1sq9a_         312 KLRFWDVKTKERITTLNMHCDDI  334 (393)
T ss_dssp             EEEEEETTTTEEEEEEECCGGGC
T ss_pred             EEEEEECCCCCEEEEECCcCCcc
Confidence            999998877532  455665543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=3.2e-18  Score=151.99  Aligned_cols=208  Identities=12%  Similarity=0.166  Sum_probs=139.3

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|.+++|++++ .+++++.|+++++|++...         .....+..+++++++ .+++++.++.+.+|+... ++   
T Consensus        48 ~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~---------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~---  112 (287)
T d1pgua2          48 LIVSLDNSKAQ-EYSSISWDDTLKVNGITKH---------EFGSQPKVASANNDG-FTAVLTNDDDLLILQSFT-GD---  112 (287)
T ss_dssp             CEEEEECCSTT-CCEEEETTTEEEETTEEEE---------ECSSCEEEEEECSSS-EEEEEETTSEEEEEETTT-CC---
T ss_pred             CEEEEEecCCC-eEEEEeecccccccccccc---------ccccceeeeeeccCC-ceEEEeecccceeeeccc-ee---
Confidence            79999999765 5788999999999986543         123356788999988 777778888888888761 11   


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc---------------Cce----EEeccCCeEE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL---------------GTP----IRRGFGGLSI  241 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~---------------~~~----~~~~~~~v~~  241 (427)
                                           .+..+..  ...+  .++++++..++.               ...    ...+...+.+
T Consensus       113 ---------------------~~~~~~~--~~~~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~  167 (287)
T d1pgua2         113 ---------------------IIKSVRL--NSPG--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY  167 (287)
T ss_dssp             ---------------------EEEEEEC--SSCE--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEE
T ss_pred             ---------------------eeeeccc--ccee--eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeE
Confidence                                 1111111  1111  122222222110               000    1125578999


Q ss_pred             EEEccCCCEEEEEecCCcEEEEEcCCCCcc--ccccCCCCeeEEEECCCC----------CEEEEEEcCCceeeeeeeCC
Q 014302          242 LKWSPTGDYFFAAKFDGTFYLWETNTWTSE--PWSSTSGFVTGATWDPEG----------RMILLAFAGSLTLGSIHFAS  309 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~~v~~v~~spdg----------~~l~~~~~~~~~i~~~~~~~  309 (427)
                      ++|+|++++|++++.||.|++||+.+++..  .+..|...|.+++|+|++          .++++++ .++.+++|++..
T Consensus       168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs-~D~~i~iw~~~~  246 (287)
T d1pgua2         168 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS-LDTNIFIYSVKR  246 (287)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE-TTSCEEEEESSC
T ss_pred             EEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeec-CCCeEEEEECCC
Confidence            999999999999999999999999888753  455889999999998754          5677664 555888888765


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA  367 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~  367 (427)
                      ....+           .....|.+.|++++|+|++. |++   ++.|   ++|++|++
T Consensus       247 ~~~~~-----------~~~~~h~~~V~~v~~~~~~~-l~s---~g~D---~~v~iW~i  286 (287)
T d1pgua2         247 PMKII-----------KALNAHKDGVNNLLWETPST-LVS---SGAD---ACIKRWNV  286 (287)
T ss_dssp             TTCCE-----------EETTSSTTCEEEEEEEETTE-EEE---EETT---SCEEEEEE
T ss_pred             CCeEE-----------EEeCCCCCCeEEEEECCCCE-EEE---EECC---CeEEEEEE
Confidence            32111           00112445899999999874 666   3445   67999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=6.7e-18  Score=159.11  Aligned_cols=292  Identities=11%  Similarity=0.017  Sum_probs=165.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcce---eeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC---ILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~---~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~  176 (427)
                      .+..++|||||++|++++.|+++++||+.+......   ....+|...+.+++|+|||+++++++ .++.+.+||... +
T Consensus        63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~-~  141 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET-L  141 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT-C
T ss_pred             CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCc-c
Confidence            689999999999999999999999999988732221   11234666778889999996555555 458999999872 1


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-----c----------Cc----eEEeccC
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-----L----------GT----PIRRGFG  237 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-----~----------~~----~~~~~~~  237 (427)
                      .......+..              ................+..++++..+.     .          ..    ....+..
T Consensus       142 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  207 (426)
T d1hzua2         142 EPKQIVSTRG--------------MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP  207 (426)
T ss_dssp             CEEEEEECCE--------------ECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS
T ss_pred             ceeEEeeccC--------------CCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCC
Confidence            1111111100              000000001122233455555554311     0          00    1123556


Q ss_pred             CeEEEEEccCCCEEEEEe-cCCcEEEEEcCCCCccccc---cCCCCeeEEEECCCCC--EEEEEEcCCceeeeeeeCCCC
Q 014302          238 GLSILKWSPTGDYFFAAK-FDGTFYLWETNTWTSEPWS---STSGFVTGATWDPEGR--MILLAFAGSLTLGSIHFASKP  311 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~-~dg~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~--~l~~~~~~~~~i~~~~~~~~~  311 (427)
                      .+..+.|+|++++++++. .+..+.+++..+++.....   ..........+..++.  ..+.....++.+..+......
T Consensus       208 ~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~  287 (426)
T d1hzua2         208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN  287 (426)
T ss_dssp             SEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT
T ss_pred             ccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc
Confidence            788899999999988554 5677999999887763322   1112222233322222  222222333344444433321


Q ss_pred             CCccccccccccccceee-ccCCceeEEEECCCCCEEEEEEe----cCCCcceeEEEEEEeccCce-EEEeeeeeeeCCC
Q 014302          312 PSLDAHLLPVDLPDIVSL-TGSQGIEKIAWDASGERLAVSYK----GGDDIYKGLIAIYDARRTPL-ISLSLIGFIRGPG  385 (427)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~sp~g~~La~~~~----~~~d~~~g~i~vwd~~~~~~-~~~~~~~~~~~~~  385 (427)
                      ....      .......+ .++..+..++|+|||++|++...    +..+   ++|+|||+++++. ..+.+.+...+..
T Consensus       288 ~~~~------~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~---~tv~vwd~~t~~~~~~~~~~~~~~~~~  358 (426)
T d1hzua2         288 HPQY------AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS---QSVAVFDLKNLDAKYQVLPIAEWADLG  358 (426)
T ss_dssp             CTTT------BTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHH---TCEEEEETTCTTSCCEEECHHHHHCCC
T ss_pred             cccc------cceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccC---CEEEEEECCCCCcCeEEeccchhcccC
Confidence            1100      01111122 23457899999999999997321    2223   5699999998765 3444444333322


Q ss_pred             -CCCCceeEEeccCCCCCc-eeEEEee----CceEEEEec
Q 014302          386 -DNPKPVAFSFHDKFKQGP-LLSVCWS----SGFCCTYPL  419 (427)
Q Consensus       386 -~~~~~~~~~f~~~~~~g~-~l~v~~~----~g~i~~~~~  419 (427)
                       .......++|.|+   |. ++..+|.    +|.|.+|+.
T Consensus       359 ~~~~rv~~~~fSpD---Gk~i~vs~~~~~~~~~~i~v~D~  395 (426)
T d1hzua2         359 EGAKRVVQPEYNKR---GDEVWFSVWNGKNDSSALVVVDD  395 (426)
T ss_dssp             SSCCCEEEEEECSS---SSEEEEEECCCTTSCCEEEEEET
T ss_pred             CCCccEEEEEECCC---CCEEEEEEecCCCCCCeEEEEEC
Confidence             2334667889886   54 4444553    678999873

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.77  E-value=1.3e-16  Score=142.07  Aligned_cols=229  Identities=14%  Similarity=0.141  Sum_probs=157.7

Q ss_pred             ceeeeEEcCCCCEEE-EEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~la-t~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .+..++|+|||++|+ +++.++.|++||+.+.  ........+ ..+..++|++++..+++++.. ..+.+|+..     
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  104 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATN--NVIATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-----  104 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT--EEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETT-----
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCC--ceeeeeecc-ccccccccccccccccccccccceeeecccc-----
Confidence            467899999999875 5667899999999877  333333333 357899999999666666655 778899986     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCccc---------------CceE--EeccCCeEE
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGL---------------GTPI--RRGFGGLSI  241 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~---------------~~~~--~~~~~~v~~  241 (427)
                          .+                .....+.  ......++.|+|+|+.+..               ....  ..+......
T Consensus       105 ----~~----------------~~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (301)
T d1l0qa2         105 ----SN----------------TVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKG  162 (301)
T ss_dssp             ----TT----------------EEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEE
T ss_pred             ----cc----------------eeeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceE
Confidence                11                2222222  2445678889999886421               1111  123456788


Q ss_pred             EEEccCCCEEEEEecC-CcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCC--ceeeeeeeCCCCCCccccc
Q 014302          242 LKWSPTGDYFFAAKFD-GTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGS--LTLGSIHFASKPPSLDAHL  318 (427)
Q Consensus       242 ~~~sp~g~~l~~~~~d-g~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~--~~i~~~~~~~~~~~~~~~~  318 (427)
                      +.++|+++.+++++.+ +.+.+|+....+.............++|+++++.++++..+.  +.+++|+..+...      
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~------  236 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI------  236 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE------
T ss_pred             EEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeE------
Confidence            9999999999866654 667778777665555555566788999999999988765443  4677776654310      


Q ss_pred             cccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee
Q 014302          319 LPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL  377 (427)
Q Consensus       319 ~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~  377 (427)
                             ...+..+..+.+++|+|||++|.++  +..+   ++|++||+++++++...+
T Consensus       237 -------~~~~~~~~~~~~va~spdg~~l~va--~~~~---~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         237 -------TARIPVGPDPAGIAVTPDGKKVYVA--LSFC---NTVSVIDTATNTITATMA  283 (301)
T ss_dssp             -------EEEEECCSSEEEEEECTTSSEEEEE--ETTT---TEEEEEETTTTEEEEEEE
T ss_pred             -------EEEEcCCCCEEEEEEeCCCCEEEEE--ECCC---CeEEEEECCCCeEEEEEe
Confidence                   1122334578999999999998664  4444   679999999998775444

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=5.1e-16  Score=140.24  Aligned_cols=273  Identities=13%  Similarity=0.124  Sum_probs=168.5

Q ss_pred             EEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCccccccc
Q 014302          113 IVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASFLGA  191 (427)
Q Consensus       113 ~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~~~~  191 (427)
                      .+++++.|++|+||+++..+.........|.+.+.+|+|+|||+.+++++. ++.|.+|+++..+.              
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~--------------   71 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG--------------   71 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC--------------
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC--------------
Confidence            446777899999999986633233333467788999999999966656665 58999999972111              


Q ss_pred             ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc-----e---------------EEeccCCeEEEEEccCCCEE
Q 014302          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT-----P---------------IRRGFGGLSILKWSPTGDYF  251 (427)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-----~---------------~~~~~~~v~~~~~sp~g~~l  251 (427)
                             .....  ........+..++|+|||+++....     .               ...+...+.++.++|+++++
T Consensus        72 -------~~~~~--~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          72 -------ALTFA--AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             -------CEEEE--EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             -------cEEEe--eecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence                   00111  1111244567899999999754221     0               11234567788999999998


Q ss_pred             EEEe-cCCcEEEEEcCCCCcccc-------ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccc
Q 014302          252 FAAK-FDGTFYLWETNTWTSEPW-------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDL  323 (427)
Q Consensus       252 ~~~~-~dg~v~iwd~~~~~~~~~-------~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  323 (427)
                      +.++ .+..|.+|+.........       .........++|++++.+++...........+.+......+.........
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  222 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM  222 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee
Confidence            8655 456799999876554211       13455668899999999988777666565555554432211110000000


Q ss_pred             ccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc
Q 014302          324 PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP  403 (427)
Q Consensus       324 ~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~  403 (427)
                      +  ...........+++++|++++.+.  +..+   +.+.+|++....... ...+....   ...+..++|.|+   |.
T Consensus       223 ~--~~~~~~~~~~~~~~s~d~~~~~~~--~~~~---~~~~~~~~~~~~~~~-~~~~~~~~---~~~p~~~a~spD---Gk  288 (333)
T d1ri6a_         223 P--ENFSDTRWAADIHITPDGRHLYAC--DRTA---SLITVFSVSEDGSVL-SKEGFQPT---ETQPRGFNVDHS---GK  288 (333)
T ss_dssp             C--TTCCSCCCEEEEEECTTSSEEEEE--ETTT---TEEEEEEECTTSCCE-EEEEEEEC---SSSCCCEEECTT---SS
T ss_pred             e--cCCCccccceeEEEecccCceeee--cccC---CeEEEEEEcCCCCEE-EEEEEeCC---CCCeeEEEEeCC---CC
Confidence            0  011122356788999999998875  3333   569999986543321 11122211   123668899986   77


Q ss_pred             eeEEEee-CceEEEEecccc
Q 014302          404 LLSVCWS-SGFCCTYPLIFR  422 (427)
Q Consensus       404 ~l~v~~~-~g~i~~~~~~~~  422 (427)
                      .|.|+.. ++.|.+|.+=.+
T Consensus       289 ~l~va~~~~~~v~v~~id~~  308 (333)
T d1ri6a_         289 YLIAAGQKSHHISVYEIVGE  308 (333)
T ss_dssp             EEEEECTTTCEEEEEEEETT
T ss_pred             EEEEEECCCCeEEEEEEECC
Confidence            6666654 688999976433

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=9.6e-16  Score=138.38  Aligned_cols=235  Identities=12%  Similarity=0.086  Sum_probs=149.5

Q ss_pred             ceeeeEEcCCCCEEEEEe-CCCeEEEEEccCCCCccee-eccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~-~d~~v~vwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~  177 (427)
                      .|+.|+|||||++|++++ .|+.|++|++......... ....+...+..++|+|||+.+++++.+ +.+.+|+....  
T Consensus        38 ~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~--  115 (333)
T d1ri6a_          38 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG--  115 (333)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT--
T ss_pred             CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccc--
Confidence            688999999999886554 5899999999876332222 222345567889999999555555543 77888887610  


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCc----------------e-------EE-
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGT----------------P-------IR-  233 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----------------~-------~~-  233 (427)
                                           .......... ....+.++.++||++.+....                .       .. 
T Consensus       116 ---------------------~~~~~~~~~~-~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  173 (333)
T d1ri6a_         116 ---------------------LPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTT  173 (333)
T ss_dssp             ---------------------EEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             ---------------------cceecccccC-CCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeee
Confidence                                 1111111111 244566788888887632110                0       00 


Q ss_pred             eccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCcccc-----------ccCCCCeeEEEECCCCCEEEEEEcCCce
Q 014302          234 RGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPW-----------SSTSGFVTGATWDPEGRMILLAFAGSLT  301 (427)
Q Consensus       234 ~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~-----------~~~~~~v~~v~~spdg~~l~~~~~~~~~  301 (427)
                      ........++|++++.+++ +....+...+|+.........           .........+++++|+++++.+....+.
T Consensus       174 ~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~  253 (333)
T d1ri6a_         174 VEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL  253 (333)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             ecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCe
Confidence            1224457899999999888 445567788888654432110           1334566788999999999888777778


Q ss_pred             eeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEe--ccCceE
Q 014302          302 LGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDA--RRTPLI  373 (427)
Q Consensus       302 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~--~~~~~~  373 (427)
                      +.+|.+.........         ......++.+.+++|+|||++|+++  +..+   +.|++|++  +++.+.
T Consensus       254 ~~~~~~~~~~~~~~~---------~~~~~~~~~p~~~a~spDGk~l~va--~~~~---~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         254 ITVFSVSEDGSVLSK---------EGFQPTETQPRGFNVDHSGKYLIAA--GQKS---HHISVYEIVGEQGLLH  313 (333)
T ss_dssp             EEEEEECTTSCCEEE---------EEEEECSSSCCCEEECTTSSEEEEE--CTTT---CEEEEEEEETTTTEEE
T ss_pred             EEEEEEcCCCCEEEE---------EEEeCCCCCeeEEEEeCCCCEEEEE--ECCC---CeEEEEEEECCCCcEE
Confidence            888877654221110         0111233467899999999999885  4444   56999965  555543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=6.7e-17  Score=146.73  Aligned_cols=242  Identities=11%  Similarity=0.094  Sum_probs=142.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|+|+ .+|++|+.|++|++|++.............+...+....+++++..+++.+.++.+++|++........
T Consensus        55 ~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~  133 (355)
T d1nexb2          55 GVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD  133 (355)
T ss_dssp             CEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC------
T ss_pred             CEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecc
Confidence            7999999985 589999999999999998772222222233444556777888884444455669999999863221110


Q ss_pred             cccCcc----------------------cccccc--------cCCCCcce--------eEeehhcccCCCceeeeEeCCC
Q 014302          181 VRSGAA----------------------SFLGAL--------SRGPGTRW--------TLVDFLRSQNGEQITALSWGPD  222 (427)
Q Consensus       181 ~~~~~~----------------------~~~~~~--------~~~~~~~~--------~~~~~~~~~~~~~v~~~~~spd  222 (427)
                      ......                      ......        ........        ........+ ...+.++.|+|+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~  212 (355)
T d1nexb2         134 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH-TDRIYSTIYDHE  212 (355)
T ss_dssp             -----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC-SSCEEEEEEETT
T ss_pred             ccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecc-cccccccccccc
Confidence            000000                      000000        00000000        111112222 556678888888


Q ss_pred             CCCcccC--------------c---eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEE-E
Q 014302          223 GRFPGLG--------------T---PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGA-T  284 (427)
Q Consensus       223 g~~l~~~--------------~---~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v-~  284 (427)
                      +..+..+              .   .+..|...|.+++|+  +++|++++.||.|++||+++.... +..|...+.++ +
T Consensus       213 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~  289 (355)
T d1nexb2         213 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK-FSYHHTNLSAITT  289 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE-EEEECTTCCCCCE
T ss_pred             ceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccccccee-cccccCCceEEEE
Confidence            8764422              1   134477889998886  468999999999999999876543 23344455444 5


Q ss_pred             ECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEE
Q 014302          285 WDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAI  364 (427)
Q Consensus       285 ~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~v  364 (427)
                      +++++++++++ + ++.+++|++.+.....           .....+.+.|.+++|+|+ ..+++   ++.|   |+++|
T Consensus       290 ~~~~~~~l~~g-~-d~~i~vwd~~tg~~~~-----------~~~~~~~~~V~~v~~~~~-~~~~~---~s~d---g~~~l  349 (355)
T d1nexb2         290 FYVSDNILVSG-S-ENQFNIYNLRSGKLVH-----------ANILKDADQIWSVNFKGK-TLVAA---VEKD---GQSFL  349 (355)
T ss_dssp             EEECSSEEEEE-E-TTEEEEEETTTCCBCC-----------SCTTTTCSEEEEEEEETT-EEEEE---EESS---SCEEE
T ss_pred             EcCCCCEEEEE-e-CCEEEEEECCCCCEEE-----------EEecCCCCCEEEEEEcCC-eEEEE---EECC---CcEEE
Confidence            67777776654 4 4588888887642100           001123348999999986 34544   4555   55666


Q ss_pred             EEe
Q 014302          365 YDA  367 (427)
Q Consensus       365 wd~  367 (427)
                      |.+
T Consensus       350 ~~~  352 (355)
T d1nexb2         350 EIL  352 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.72  E-value=3.7e-16  Score=141.69  Aligned_cols=267  Identities=11%  Similarity=0.038  Sum_probs=167.3

Q ss_pred             eEEcCCCCEEEEEeCCCeEEEEEccCCCCcceee-ccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCccccc
Q 014302          105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACIL-TSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAASVR  182 (427)
Q Consensus       105 l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~~~~  182 (427)
                      ++|++++++|++++.+++|.|||+.+.  +.... ...+...+.+++|+|||+.+++++.. +.|.+||+.         
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~--~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~---------   70 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASD--TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD---------   70 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTT--EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT---------
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCC--CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc---------
Confidence            578999999999999999999999887  33332 33566678899999999666677654 889999997         


Q ss_pred             cCcccccccccCCCCcceeEeehhccc-----CCCceeeeEeCCCCCCcccCc---------------------------
Q 014302          183 SGAASFLGALSRGPGTRWTLVDFLRSQ-----NGEQITALSWGPDGRFPGLGT---------------------------  230 (427)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~spdg~~l~~~~---------------------------  230 (427)
                      ++                +.+..+...     ....+..++|+|||+++....                           
T Consensus        71 t~----------------~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  134 (346)
T d1jmxb_          71 TC----------------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE  134 (346)
T ss_dssp             TT----------------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred             cC----------------eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence            11                111111111     112345788999998743111                           


Q ss_pred             --eEEe--ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          231 --PIRR--GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       231 --~~~~--~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                        .+..  ....+..+.++++++.++.   ++.+.+||+.+.+.............+.++|++..++........+..+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (346)
T d1jmxb_         135 AKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY  211 (346)
T ss_dssp             BCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred             eeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeee
Confidence              0011  1123445556666665543   35688899887776544444556677778888887765555544443333


Q ss_pred             eCCC----CC-----Ccccccccccccc-----ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          307 FASK----PP-----SLDAHLLPVDLPD-----IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       307 ~~~~----~~-----~~~~~~~~~~~~~-----~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      ....    ..     ........++...     .....+...+..+.+++++.+++..  ..     +.|.+||+.++++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~v~v~d~~~~~~  284 (346)
T d1jmxb_         212 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG--VL-----NRLAKYDLKQRKL  284 (346)
T ss_dssp             EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE--EE-----SEEEEEETTTTEE
T ss_pred             eeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEe--cC-----CeEEEEECCCCcE
Confidence            2111    00     0000111111111     1112244468889999999888774  22     3499999999887


Q ss_pred             EEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          373 ISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      +...+.+      .  .+.+++|.|+   |..|.++..+|.|.+|+.
T Consensus       285 ~~~~~~~------~--~~~~va~s~D---G~~l~v~~~d~~v~v~D~  320 (346)
T d1jmxb_         285 IKAANLD------H--TYYCVAFDKK---GDKLYLGGTFNDLAVFNP  320 (346)
T ss_dssp             EEEEECS------S--CCCEEEECSS---SSCEEEESBSSEEEEEET
T ss_pred             EEEEcCC------C--CEEEEEEcCC---CCEEEEEeCCCcEEEEEC
Confidence            6443222      1  3668999986   788999999999999986

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=7.3e-16  Score=139.15  Aligned_cols=238  Identities=12%  Similarity=0.049  Sum_probs=151.6

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCcceeec--cCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCccccccCcccc
Q 014302          112 HIVAFISGSTQVIVRDYEDSGKDACILT--SDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNAASVRSGAASF  188 (427)
Q Consensus       112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~~~~~~~~~~~  188 (427)
                      ++|++++.|++|+|||+.+.  +.....  ..+...+.+++|+|||+.+++++. ++.|.+||+.         ++    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~--~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~---------t~----   66 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM--AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV---------TG----   66 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT--EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT---------TC----
T ss_pred             eEEEEEcCCCEEEEEECCCC--eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECC---------CC----
Confidence            58999999999999999887  333222  234456889999999966656664 5889999997         11    


Q ss_pred             cccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe------------c
Q 014302          189 LGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK------------F  256 (427)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~------------~  256 (427)
                                  +.+..+..+..                     ..+...+..++|+|++++++++.            .
T Consensus        67 ------------~~~~~~~~~~~---------------------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T d1pbyb_          67 ------------ETLGRIDLSTP---------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             ------------CEEEEEECCBT---------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             ------------cEEEEEecCCC---------------------cccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence                        11111111100                     00112344577778887777554            4


Q ss_pred             CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCC-----------CC----cccccc-c
Q 014302          257 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKP-----------PS----LDAHLL-P  320 (427)
Q Consensus       257 dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~-----------~~----~~~~~~-~  320 (427)
                      +..+.+||..+.+..........+..++|+|||+++++++.+   ...|+.....           ..    ..+... +
T Consensus       114 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (337)
T d1pbyb_         114 PTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD---LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWN  190 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS---EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCC
T ss_pred             ccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC---cceeeeecCcEEEEeecCCccccceecCCcceeec
Confidence            577899999988876655666778899999999999876432   2334333210           00    000000 0


Q ss_pred             ---------------------------------cccccc-----eeeccCCceeEEEECCCCCEEEEEEecCCCcceeEE
Q 014302          321 ---------------------------------VDLPDI-----VSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLI  362 (427)
Q Consensus       321 ---------------------------------~~~~~~-----~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i  362 (427)
                                                       .+....     ........+..++++|++.++++.   .     +.|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~i  262 (337)
T d1pbyb_         191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---Y-----NVL  262 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---E-----SEE
T ss_pred             cccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc---c-----ccE
Confidence                                             000000     011123356778899999998773   2     359


Q ss_pred             EEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          363 AIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       363 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++||++++.++.....        ...+.+++|.|+   |..|.++..+|.|.+|+.
T Consensus       263 ~v~d~~~~~~~~~~~~--------~~~~~~~~~s~d---G~~l~v~~~~~~i~v~D~  308 (337)
T d1pbyb_         263 ESFDLEKNASIKRVPL--------PHSYYSVNVSTD---GSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             EEEETTTTEEEEEEEC--------SSCCCEEEECTT---SCEEEEESBSSEEEEEET
T ss_pred             EEEECCCCcEEEEEcC--------CCCEEEEEECCC---CCEEEEEeCCCcEEEEEC
Confidence            9999999887644321        123669999986   888999999999999986

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=7.5e-16  Score=145.00  Aligned_cols=205  Identities=8%  Similarity=0.028  Sum_probs=139.3

Q ss_pred             cCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCccc
Q 014302          108 HQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAAS  187 (427)
Q Consensus       108 sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~  187 (427)
                      +++.-++++.+.|++|.|||..+.  +.......+ ..+..++|||||+++++++.++++.+||+.         ++   
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~--~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~---------t~---   93 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTY--EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLW---------MK---   93 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTC--CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETT---------SS---
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCC--cEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEee---------CC---
Confidence            333445688899999999999887  444433344 469999999999544444556999999987         11   


Q ss_pred             ccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcC
Q 014302          188 FLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETN  266 (427)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~  266 (427)
                                 +......+..                       ...+.+.+.+..|+|||++|+ +++.++.|++||..
T Consensus        94 -----------~~~~~~~i~~-----------------------~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~  139 (432)
T d1qksa2          94 -----------EPTTVAEIKI-----------------------GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE  139 (432)
T ss_dssp             -----------SCCEEEEEEC-----------------------CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT
T ss_pred             -----------CceEEEEEec-----------------------CCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc
Confidence                       0001110100                       011223445556889999875 78889999999999


Q ss_pred             CCCcccc------------ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          267 TWTSEPW------------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       267 ~~~~~~~------------~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      +++....            ..+......+.++|+|..++++..+.+.+..++..+...           .....+..+..
T Consensus       140 t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-----------~~~~~i~~g~~  208 (432)
T d1qksa2         140 TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----------LKTTEISAERF  208 (432)
T ss_dssp             TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------EEEEEEECCSS
T ss_pred             cccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc-----------ceEEEEcccCc
Confidence            8875321            145566778999999999988888888888887765311           01122333446


Q ss_pred             eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEee
Q 014302          335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSL  377 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~  377 (427)
                      +..++|+|||++++++...+     ..|.++|..++......+
T Consensus       209 ~~~~~~spdg~~~~va~~~~-----~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         209 LHDGGLDGSHRYFITAANAR-----NKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEEEECTTSCEEEEEEGGG-----TEEEEEETTTTEEEEEEE
T ss_pred             cccceECCCCCEEEEecccc-----ceEEEeecccceEEEEec
Confidence            78999999999999865544     359999998877665443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.69  E-value=3.2e-16  Score=147.41  Aligned_cols=198  Identities=12%  Similarity=0.075  Sum_probs=128.6

Q ss_pred             CEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCccccccc
Q 014302          112 HIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGA  191 (427)
Q Consensus       112 ~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~  191 (427)
                      .++++.+.|++|+|||+.+.  +.......| ..+..++|||||+.+++++.++++++||+.         ++       
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~--~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~---------t~-------   93 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSK--KIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLW---------AK-------   93 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTC--SEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETT---------SS-------
T ss_pred             EEEEEEcCCCEEEEEECCCC--cEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEcc---------CC-------
Confidence            35677888999999999987  444444344 469999999999555555556999999997         21       


Q ss_pred             ccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCc
Q 014302          192 LSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTS  270 (427)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~  270 (427)
                             +......++.                       ...|.+.+.+++|+|||++|+ ++..++.+++||..++..
T Consensus        94 -------~~~~~~~i~~-----------------------~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2          94 -------EPTKVAEIKI-----------------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             -------SCEEEEEEEC-----------------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             -------ceeEEEEEeC-----------------------CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence                   1001110110                       011233455667889999987 566899999999998875


Q ss_pred             cccc------------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          271 EPWS------------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       271 ~~~~------------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      ....            .+......+.+++++..++.+..+.+.+..+...+....           ..........+..+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~  212 (426)
T d1hzua2         144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-----------TVTSIGAAPFLADG  212 (426)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSC-----------EEEEEECCSSEEEE
T ss_pred             eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccce-----------eeEEeccCCccEee
Confidence            3222            344555667778888877776666655555554443110           01222344578999


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS  374 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~  374 (427)
                      +|+|++++++++....     ..+.+|+..++.++.
T Consensus       213 ~~~~~g~~~~~a~~~~-----~~~~~~~~~~~~~~~  243 (426)
T d1hzua2         213 GWDSSHRYFMTAANNS-----NKVAVIDSKDRRLSA  243 (426)
T ss_dssp             EECTTSCEEEEEETTC-----SEEEEEETTTTEEEE
T ss_pred             eECCCCcEEEeeeecc-----cceeeeecccccEEE
Confidence            9999999998864433     348888887666543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.3e-15  Score=137.09  Aligned_cols=244  Identities=11%  Similarity=0.020  Sum_probs=147.5

Q ss_pred             ceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCce
Q 014302          135 ACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQI  214 (427)
Q Consensus       135 ~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  214 (427)
                      .+.+..+|.+.|++|+|+|+++.+++++.|++|+||+++....                     ...... ...| ..+|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~---------------------~~~~~~-~~~h-~~~V   59 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK---------------------NVDLLQ-SLRY-KHPL   59 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT---------------------EEEEEE-EEEC-SSCE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCc---------------------ceEEEE-ecCC-CCCE
Confidence            4456678999999999999995444444679999999971111                     111111 2233 7889


Q ss_pred             eeeEeCCCCC-CcccCce--------------EE----eccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-
Q 014302          215 TALSWGPDGR-FPGLGTP--------------IR----RGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-  274 (427)
Q Consensus       215 ~~~~~spdg~-~l~~~~~--------------~~----~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-  274 (427)
                      .+++|+|++. ++.++..              ..    .+........+.+++..+++++.++.+++||++........ 
T Consensus        60 ~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~  139 (342)
T d1yfqa_          60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             EEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeee
Confidence            9999998654 4443311              00    12233445557778889999999999999998765542211 


Q ss_pred             ------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEEC-CCCCEE
Q 014302          275 ------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD-ASGERL  347 (427)
Q Consensus       275 ------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s-p~g~~L  347 (427)
                            ..........+.+++..+++++. ++.+..|++..........         ........+....+. .++..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  209 (342)
T d1yfqa_         140 KNLNSNNTKVKNKIFTMDTNSSRLIVGMN-NSQVQWFRLPLCEDDNGTI---------EESGLKYQIRDVALLPKEQEGY  209 (342)
T ss_dssp             EESCSSSSSSCCCEEEEEECSSEEEEEES-TTEEEEEESSCCTTCCCEE---------EECSCSSCEEEEEECSGGGCEE
T ss_pred             cccccccccceeeeeeeeccCCceeeecC-CCcEEEEecccCcccceee---------eecccccceeeeEeecCCCCEE
Confidence                  22334456677788888887654 4588888876642211000         001111234454554 566777


Q ss_pred             EEEEecCCCcceeEEEEEEeccCceEE-------Ee-eeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          348 AVSYKGGDDIYKGLIAIYDARRTPLIS-------LS-LIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       348 a~~~~~~~d~~~g~i~vwd~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ++   ++.|   |.+.+|++.......       .. ...............+++|+|+   +.+|++|..||.|.+|++
T Consensus       210 ~~---~s~d---g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~---~~~lasg~~Dg~v~vWD~  280 (342)
T d1yfqa_         210 AC---SSID---GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR---HKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             EE---EETT---SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT---TCCEEEEETTSCEEEEET
T ss_pred             Ee---ecCC---CeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCC---ccEEEEECCCCEEEEEEC
Confidence            77   4555   669999986533211       00 0000001112223458999996   668999999999999986


Q ss_pred             c
Q 014302          420 I  420 (427)
Q Consensus       420 ~  420 (427)
                      -
T Consensus       281 ~  281 (342)
T d1yfqa_         281 Q  281 (342)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=1.5e-15  Score=142.88  Aligned_cols=171  Identities=11%  Similarity=-0.020  Sum_probs=121.1

Q ss_pred             CceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcce---eeccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCC
Q 014302          100 VDLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDAC---ILTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYP  175 (427)
Q Consensus       100 ~~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~---~~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~  175 (427)
                      +.+..++|||||++|++++.|+++++||+.+......   .....|...+.+++|+|||+.+++++. ++++.+||..  
T Consensus        62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~--  139 (432)
T d1qksa2          62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE--  139 (432)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT--
T ss_pred             CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCc--
Confidence            3689999999999999999999999999987632222   112346667778889999966666665 5999999987  


Q ss_pred             CCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EE
Q 014302          176 GNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AA  254 (427)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~  254 (427)
                             ++                .++..+..+ ...+....+.              +......+.++|+|+.++ +.
T Consensus       140 -------t~----------------~~~~~~~~~-~~~~~~~~~~--------------~~~~~~~v~~s~dg~~~~vs~  181 (432)
T d1qksa2         140 -------TL----------------EPKKIQSTR-GMTYDEQEYH--------------PEPRVAAILASHYRPEFIVNV  181 (432)
T ss_dssp             -------TC----------------CEEEEEECC-EECTTTCCEE--------------SCCCEEEEEECSSSSEEEEEE
T ss_pred             -------cc----------------cceeeeccC-Cccccceecc--------------CCCceeEEEECCCCCEEEEEE
Confidence                   11                122222221 1111111222              234566788999999876 66


Q ss_pred             ecCCcEEEEEcCCCCccc--cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          255 KFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                      ..++.|.+||....+...  ...+......++|+|||+++++++.++..+..++....
T Consensus       182 ~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             ccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence            778999999998776532  23566778899999999999998888877777776653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-14  Score=128.02  Aligned_cols=219  Identities=14%  Similarity=0.176  Sum_probs=130.0

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|++++|  ++++|++|+.|+.|++|++...  ........+..  ....+.+....+++...++.+.+|+.......  
T Consensus        57 ~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  128 (293)
T d1p22a2          57 SVLCLQY--DERVIITGSSDSTVRVWDVNTG--EMLNTLIHHCE--AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI--  128 (293)
T ss_dssp             CEEEEEC--CSSEEEEEETTSCEEEEESSSC--CEEEEECCCCS--CEEEEECCTTEEEEEETTSCEEEEECSSSSCC--
T ss_pred             CEeeeec--ccceeecccccccccccccccc--ccccccccccc--ccccccccccceeecccccceeEeeccccccc--
Confidence            7888876  6789999999999999999877  23222222222  22334445535666667799999998621110  


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCC--------CCCC----cccCce---EEeccCCeEEEEEc
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGP--------DGRF----PGLGTP---IRRGFGGLSILKWS  245 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--------dg~~----l~~~~~---~~~~~~~v~~~~~s  245 (427)
                                          .....+..+ ...+..+.+.+        |+..    +..+..   +..+...+..+.+ 
T Consensus       129 --------------------~~~~~~~~~-~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-  186 (293)
T d1p22a2         129 --------------------TLRRVLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-  186 (293)
T ss_dssp             --------------------EEEEEECCC-SSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-
T ss_pred             --------------------ccccccccc-ccccccceecccccccccCCCceeeecCCCCcEEEEEcccccccccccC-
Confidence                                011111111 23333333222        2111    111112   3334455555555 


Q ss_pred             cCCCEEEEEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCC--Cccccccccc
Q 014302          246 PTGDYFFAAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPP--SLDAHLLPVD  322 (427)
Q Consensus       246 p~g~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~  322 (427)
                       ++.+|++++.|+.|++||+++.+..... .+...+..  +++++.+|++++. ++.+++|++.....  ......    
T Consensus       187 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~----  258 (293)
T d1p22a2         187 -RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAY-DGKIKVWDLVAALDPRAPAGTL----  258 (293)
T ss_dssp             -ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEET-TSCEEEEEHHHHTSTTSCTTTT----
T ss_pred             -CCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcC-CCEEEEEECCCCccccccCCce----
Confidence             5678999999999999999988774433 55666654  5567888887754 55888887654211  100000    


Q ss_pred             cccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEE
Q 014302          323 LPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYD  366 (427)
Q Consensus       323 ~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd  366 (427)
                       .......|.+.|.+++|+  +++||+   ++.|   |+|+|||
T Consensus       259 -~~~~~~~H~~~V~~v~~d--~~~l~s---~s~D---g~i~iWD  293 (293)
T d1p22a2         259 -CLRTLVEHSGRVFRLQFD--EFQIVS---SSHD---DTILIWD  293 (293)
T ss_dssp             -EEEEECCCSSCCCCEEEC--SSCEEE---CCSS---SEEEEEC
T ss_pred             -eeEEecCCCCCEEEEEEc--CCEEEE---EecC---CEEEEeC
Confidence             001112355689999995  567888   7777   7899997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.8e-15  Score=132.90  Aligned_cols=196  Identities=14%  Similarity=0.056  Sum_probs=129.0

Q ss_pred             eeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcccccc
Q 014302          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  183 (427)
Q Consensus       104 ~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~  183 (427)
                      ...+.+....+++++.|+.+++||....  .......+|...+..+  ++++..+++++.++.|++|++.         .
T Consensus       140 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d~~---------~  206 (342)
T d2ovrb2         140 VRCVQYDGRRVVSGAYDFMVKVWDPETE--TCLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVE---------T  206 (342)
T ss_dssp             EEEEEECSSCEEEEETTSCEEEEEGGGT--EEEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEETT---------T
T ss_pred             ceeeccccceeeeecCCCeEEEeecccc--eeeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEeecc---------c
Confidence            3345566778899999999999998876  4455556676656554  4566455555667999999987         1


Q ss_pred             CcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcEEEE
Q 014302          184 GAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLW  263 (427)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iw  263 (427)
                      +                ..+..                          +..|...+.++++  ++++|++++.|+.|++|
T Consensus       207 ~----------------~~~~~--------------------------~~~~~~~v~~~~~--~~~~l~s~s~d~~i~iw  242 (342)
T d2ovrb2         207 G----------------NCIHT--------------------------LTGHQSLTSGMEL--KDNILVSGNADSTVKIW  242 (342)
T ss_dssp             C----------------CEEEE--------------------------ECCCCSCEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred             c----------------eeeeE--------------------------ecccccceeEEec--CCCEEEEEcCCCEEEEE
Confidence            1                11221                          2224445666655  45799999999999999


Q ss_pred             EcCCCCccccc----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEE
Q 014302          264 ETNTWTSEPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIA  339 (427)
Q Consensus       264 d~~~~~~~~~~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~  339 (427)
                      |+...+.....    .|...+.++.++  ++++++++ .++.+++|++.+.....       .+.......+.+.|++++
T Consensus       243 d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s-~Dg~i~iwd~~tg~~i~-------~~~~~~~~~~~~~v~~v~  312 (342)
T d2ovrb2         243 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSS-DDGTVKLWDLKTGEFIR-------NLVTLESGGSGGVVWRIR  312 (342)
T ss_dssp             ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEE-TTSEEEEEETTTCCEEE-------EEEECTTGGGTCEEEEEE
T ss_pred             ecccccccccccccceeeeceeecccC--CCeeEEEc-CCCEEEEEECCCCCEEE-------EEecccCCCCCCCEEEEE
Confidence            99887763222    466677777776  46777765 55689999887642100       000011112345799999


Q ss_pred             ECCCCCEEEEEEecCCCcc-eeEEEEEEecc
Q 014302          340 WDASGERLAVSYKGGDDIY-KGLIAIYDARR  369 (427)
Q Consensus       340 ~sp~g~~La~~~~~~~d~~-~g~i~vwd~~~  369 (427)
                      |+|++.+||+   |+.|+. ...|++||+..
T Consensus       313 ~s~~~~~la~---g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         313 ASNTKLVCAV---GSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSEEEEEE---ECSSSSSCCEEEEEECCC
T ss_pred             ECCCCCEEEE---EeCCCCCeeEEEEEeCCC
Confidence            9999999988   454421 14599999853

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.57  E-value=1.4e-12  Score=119.51  Aligned_cols=278  Identities=9%  Similarity=-0.045  Sum_probs=157.5

Q ss_pred             CCceeeeEEcCCCCEEEEE-----eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec----------
Q 014302           99 EVDLQGVSWHQHKHIVAFI-----SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC----------  163 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~-----~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~----------  163 (427)
                      +..+.+++++|||+++++.     +..+.|.+||..++  +.......+.  ...++|+|||+.++++..          
T Consensus        20 ~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg--~~~~~~~~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          20 DGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG--SILGHVNGGF--LPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             CCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC--CEEEEEeCCC--CccEEEcCCCCEEEEEeecCCccccccc
Confidence            3468889999999988764     23456778877666  3443333333  337999999955444432          


Q ss_pred             CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccC------CCceeeeEeCCCCCCcccC--------
Q 014302          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN------GEQITALSWGPDGRFPGLG--------  229 (427)
Q Consensus       164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~spdg~~l~~~--------  229 (427)
                      ++.|.+||..         ++                +....+..+.      ......+.|++|++.+...        
T Consensus        96 ~~~v~v~D~~---------t~----------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~  150 (373)
T d2madh_          96 TDYVEVFDPV---------TF----------------LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV  150 (373)
T ss_pred             ceEEEEEECC---------CC----------------cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCce
Confidence            3668999987         11                1111111110      1112356777777753211        


Q ss_pred             -------ceEEeccCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccc-------cCCCCeeEEEECCCCCEEEE
Q 014302          230 -------TPIRRGFGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS-------STSGFVTGATWDPEGRMILL  294 (427)
Q Consensus       230 -------~~~~~~~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~-------~~~~~v~~v~~spdg~~l~~  294 (427)
                             .....+.....++.++|+|+.++ +.+.|+.+.+||..........       ........+.+++++.+++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (373)
T d2madh_         151 GLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP  230 (373)
T ss_pred             EEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEe
Confidence                   11222344566788999998765 7888999999999877653322       22233455667776666543


Q ss_pred             EEcCCceeeeeeeCCCCCCccccccccccc-cceeeccCCceeEEEECCCCCEEEEEEecCCC----cceeEEEEEEecc
Q 014302          295 AFAGSLTLGSIHFASKPPSLDAHLLPVDLP-DIVSLTGSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARR  369 (427)
Q Consensus       295 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d----~~~g~i~vwd~~~  369 (427)
                        ..++.+..++........... ...... .............+++++++..++........    ...+.|.+||+.+
T Consensus       231 --~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t  307 (373)
T d2madh_         231 --VYSGKILQADISAAGATNKAP-IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             --cCCceEEEEEcCCCeEEEEEe-eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCC
Confidence              344466666655431100000 000000 00000111244667788888777653221110    0115689999999


Q ss_pred             CceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc--eeEEEeeCceEEEEec
Q 014302          370 TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP--LLSVCWSSGFCCTYPL  419 (427)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~--~l~v~~~~g~i~~~~~  419 (427)
                      ++.+...+.      .  ..+..++|.|+   |.  +++.+..++.|.+|+.
T Consensus       308 ~~~~~~~~~------~--~~~~~~a~spD---G~~~l~vt~~~d~~v~v~D~  348 (373)
T d2madh_         308 GQTSSQISL------G--HDVDAISVAQD---GGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             CcEEEEecC------C--CCeeEEEECCC---CCEEEEEEeCCCCeEEEEEC
Confidence            887643321      1  22568899886   54  4567788999999985

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.54  E-value=1.6e-13  Score=123.44  Aligned_cols=222  Identities=13%  Similarity=0.046  Sum_probs=136.9

Q ss_pred             ceeeeEEcCCCCEE-EEEeCCCeEEEEEccCCCCcceeeccC-----CcCCeeEEEEccCCCceEEEec-----------
Q 014302          101 DLQGVSWHQHKHIV-AFISGSTQVIVRDYEDSGKDACILTSD-----SQRDVKVLEWRPNGGRSLSVGC-----------  163 (427)
Q Consensus       101 ~V~~l~~sp~g~~l-at~~~d~~v~vwd~~~~~~~~~~~~~~-----~~~~v~~l~~sp~~~~~la~g~-----------  163 (427)
                      .+.+++|+|||++| ++++.++.|.+||+.++  +.......     +...+..++|+|+++.++++..           
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG--ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTC--CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CccEEEECCCCCEEEEEECCCCeEEEEECCCC--cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccc
Confidence            46789999999987 56678999999999887  33222222     2345668999999955554442           


Q ss_pred             -CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-----------
Q 014302          164 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-----------  231 (427)
Q Consensus       164 -~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-----------  231 (427)
                       +..+.+|+..         ++                .....+.  ....+..++|+|||+++..+..           
T Consensus       113 ~~~~~~~~d~~---------~~----------------~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~  165 (337)
T d1pbyb_         113 QPTRVALYDAE---------TL----------------SRRKAFE--APRQITMLAWARDGSKLYGLGRDLHVMDPEAGT  165 (337)
T ss_dssp             CCCEEEEEETT---------TT----------------EEEEEEE--CCSSCCCEEECTTSSCEEEESSSEEEEETTTTE
T ss_pred             cccceeecccc---------CC----------------eEEEecc--ccCCceEEEEcCCCCEEEEEcCCcceeeeecCc
Confidence             2445566665         11                2222222  2345678889999887542210           


Q ss_pred             -EEe--ccCCeEEEEEccCCCE------------------------EEEEecCCcEEEEEcCCCCccc--cccCCCCeeE
Q 014302          232 -IRR--GFGGLSILKWSPTGDY------------------------FFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTG  282 (427)
Q Consensus       232 -~~~--~~~~v~~~~~sp~g~~------------------------l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~  282 (427)
                       ...  .........++|++..                        +..+..++.+.+||+.++....  ...+...+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (337)
T d1pbyb_         166 LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS  245 (337)
T ss_dssp             EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred             EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEE
Confidence             000  0000000112222221                        1122234458888888777533  3367778888


Q ss_pred             EEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEE
Q 014302          283 ATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLI  362 (427)
Q Consensus       283 v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i  362 (427)
                      +.++|++.+++.+.   +.+.+|++.....             ...+.....+.+++|+|||++|++   ++.+   ++|
T Consensus       246 ~~~~~~~~~~~~~~---~~i~v~d~~~~~~-------------~~~~~~~~~~~~~~~s~dG~~l~v---~~~~---~~i  303 (337)
T d1pbyb_         246 TAVNPAKTRAFGAY---NVLESFDLEKNAS-------------IKRVPLPHSYYSVNVSTDGSTVWL---GGAL---GDL  303 (337)
T ss_dssp             EEECTTSSEEEEEE---SEEEEEETTTTEE-------------EEEEECSSCCCEEEECTTSCEEEE---ESBS---SEE
T ss_pred             EEecccceEEEEcc---ccEEEEECCCCcE-------------EEEEcCCCCEEEEEECCCCCEEEE---EeCC---CcE
Confidence            99999999987542   4677777665411             112223447899999999999998   4555   679


Q ss_pred             EEEEeccCceE
Q 014302          363 AIYDARRTPLI  373 (427)
Q Consensus       363 ~vwd~~~~~~~  373 (427)
                      +|||+++.+.+
T Consensus       304 ~v~D~~t~~~v  314 (337)
T d1pbyb_         304 AAYDAETLEKK  314 (337)
T ss_dssp             EEEETTTCCEE
T ss_pred             EEEECCCCcEE
Confidence            99999998776

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=6.8e-13  Score=120.54  Aligned_cols=227  Identities=11%  Similarity=0.021  Sum_probs=135.8

Q ss_pred             eeeeEEcCCCCEEEEE----------eCCCeEEEEEccCCCCcceeecc-------CCcCCeeEEEEccCCCceEEEec-
Q 014302          102 LQGVSWHQHKHIVAFI----------SGSTQVIVRDYEDSGKDACILTS-------DSQRDVKVLEWRPNGGRSLSVGC-  163 (427)
Q Consensus       102 V~~l~~sp~g~~lat~----------~~d~~v~vwd~~~~~~~~~~~~~-------~~~~~v~~l~~sp~~~~~la~g~-  163 (427)
                      +..++|||||++|++.          ..|+.|++||..+..  ......       ........++|+|++..+++... 
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~  126 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS  126 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC--EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC
Confidence            4478999999988765          347899999998872  222111       12233467899999965554432 


Q ss_pred             -CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccC------CCceeeeEeCCCCCCccc-----Cc-
Q 014302          164 -KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN------GEQITALSWGPDGRFPGL-----GT-  230 (427)
Q Consensus       164 -~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~spdg~~l~~-----~~-  230 (427)
                       +..+.+|+..         ++                .....+..+.      ......+.+++||+.+..     +. 
T Consensus       127 ~~~~~~~~~~~---------~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~  181 (355)
T d2bbkh_         127 PAPAVGVVDLE---------GK----------------AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP  181 (355)
T ss_dssp             SSCEEEEEETT---------TT----------------EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred             CCceeeeeecC---------CC----------------cEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeE
Confidence             3667889886         11                1111111110      112234667777765321     00 


Q ss_pred             -eE------EeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---c----------CCCCeeEEEECCCCC
Q 014302          231 -PI------RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---S----------TSGFVTGATWDPEGR  290 (427)
Q Consensus       231 -~~------~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---~----------~~~~v~~v~~spdg~  290 (427)
                       ..      ..+...+....+++++..++.++.++.+++|++..+....+.   .          .......+++++++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~  261 (355)
T d2bbkh_         182 EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD  261 (355)
T ss_dssp             EEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred             EEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC
Confidence             01      012233455678888889998899999999999877642211   1          112335688899999


Q ss_pred             EEEEEEcCC---------ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCE-EEEEEecCCCccee
Q 014302          291 MILLAFAGS---------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER-LAVSYKGGDDIYKG  360 (427)
Q Consensus       291 ~l~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~-La~~~~~~~d~~~g  360 (427)
                      .++......         ..+.+|+..+.+.             ...+..+..+.+++|+|||+. |+++  +..+   +
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~-------------~~~~~~~~~~~~~a~spDG~~~l~v~--~~~d---~  323 (355)
T d2bbkh_         262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGER-------------LAKFEMGHEIDSINVSQDEKPLLYAL--STGD---K  323 (355)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCE-------------EEEEEEEEEECEEEECCSSSCEEEEE--ETTT---T
T ss_pred             eEEEEeccCCceeecCCCCeEEEEeCCCCcE-------------EEEecCCCCEEEEEEcCCCCeEEEEE--ECCC---C
Confidence            887665433         1344444433210             112223346889999999985 4443  4444   6


Q ss_pred             EEEEEEeccCceE
Q 014302          361 LIAIYDARRTPLI  373 (427)
Q Consensus       361 ~i~vwd~~~~~~~  373 (427)
                      .|+|||+++++.+
T Consensus       324 ~i~v~D~~tg~~~  336 (355)
T d2bbkh_         324 TLYIHDAESGEEL  336 (355)
T ss_dssp             EEEEEETTTCCEE
T ss_pred             EEEEEECCCCCEE
Confidence            7999999999876

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.46  E-value=5.2e-13  Score=120.45  Aligned_cols=250  Identities=10%  Similarity=0.070  Sum_probs=132.3

Q ss_pred             ceeeeEEcCCCCEEE-EEeCCCeEEEEEccCCCCcceeecc------CCcCCeeEEEEccCCCceEEEe-----------
Q 014302          101 DLQGVSWHQHKHIVA-FISGSTQVIVRDYEDSGKDACILTS------DSQRDVKVLEWRPNGGRSLSVG-----------  162 (427)
Q Consensus       101 ~V~~l~~sp~g~~la-t~~~d~~v~vwd~~~~~~~~~~~~~------~~~~~v~~l~~sp~~~~~la~g-----------  162 (427)
                      .+.+++|+|||++|+ ++..++.|++||+.+.  +......      .+...+..++|+|||..++++.           
T Consensus        41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~--~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~  118 (346)
T d1jmxb_          41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC--KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV  118 (346)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CcceEEECCCCCEEEEEECCCCcEEEEeCccC--eeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence            467999999999774 5567899999999877  2221111      1223467899999995554443           


Q ss_pred             -cCCeEEEEeccCCCCccccccC---cccccccccCCCC-----cceeEeehhc------ccCCCceeeeEeCCCCCCcc
Q 014302          163 -CKGGICIWAPSYPGNAASVRSG---AASFLGALSRGPG-----TRWTLVDFLR------SQNGEQITALSWGPDGRFPG  227 (427)
Q Consensus       163 -~~~~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~v~~~~~spdg~~l~  227 (427)
                       .+..+.+|+.............   ..........++.     .....+....      .........+.++|++..+.
T Consensus       119 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (346)
T d1jmxb_         119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW  198 (346)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred             cCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEE
Confidence             2355677776521110000000   0000000000000     0000000000      00011122344455544332


Q ss_pred             cCceEEeccC-CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccc--cccCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          228 LGTPIRRGFG-GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP--WSSTSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       228 ~~~~~~~~~~-~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                      .......... ......+.+....++++..+..+.+||+.++....  ...+...+..+.+++++.++++...+  .+..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v  276 (346)
T d1jmxb_         199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN--RLAK  276 (346)
T ss_dssp             CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES--EEEE
T ss_pred             EEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCC--eEEE
Confidence            1110000000 00111122334445566667789999998877633  33678889999999999888765432  5666


Q ss_pred             eeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      |+..+...             ......+..+.+++|+|||++|++   ++.+   +.|+|||+++++.+
T Consensus       277 ~d~~~~~~-------------~~~~~~~~~~~~va~s~DG~~l~v---~~~d---~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         277 YDLKQRKL-------------IKAANLDHTYYCVAFDKKGDKLYL---GGTF---NDLAVFNPDTLEKV  326 (346)
T ss_dssp             EETTTTEE-------------EEEEECSSCCCEEEECSSSSCEEE---ESBS---SEEEEEETTTTEEE
T ss_pred             EECCCCcE-------------EEEEcCCCCEEEEEEcCCCCEEEE---EeCC---CcEEEEECccCCEE
Confidence            66554310             112223347899999999999998   5555   67999999998876

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.46  E-value=5.7e-12  Score=119.39  Aligned_cols=69  Identities=12%  Similarity=0.198  Sum_probs=56.0

Q ss_pred             ceeeeEEcCCCCEEEEEeC---------CCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEe
Q 014302          101 DLQGVSWHQHKHIVAFISG---------STQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWA  171 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~---------d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~  171 (427)
                      .|.+++|||||++||+++.         ++.+.|||+..+   .......+...+..++||||| +.+|...++.+.+|+
T Consensus        63 ~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~---~~~~l~~~~~~~~~~~~SPDG-~~ia~~~~~~l~~~~  138 (470)
T d2bgra1          63 SINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR---QLITEERIPNNTQWVTWSPVG-HKLAYVWNNDIYVKI  138 (470)
T ss_dssp             CCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT---EECCSSCCCTTEEEEEECSST-TCEEEEETTEEEEES
T ss_pred             ccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC---cccccccCCccccccccccCc-ceeeEeecccceEEE
Confidence            6899999999999998753         467889999877   333445678889999999999 666667788899998


Q ss_pred             cc
Q 014302          172 PS  173 (427)
Q Consensus       172 ~~  173 (427)
                      ..
T Consensus       139 ~~  140 (470)
T d2bgra1         139 EP  140 (470)
T ss_dssp             ST
T ss_pred             CC
Confidence            76

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=2.6e-11  Score=109.82  Aligned_cols=271  Identities=11%  Similarity=0.025  Sum_probs=149.4

Q ss_pred             eeeEEcCCCCEEEEEe-----CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe----------cCCeE
Q 014302          103 QGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG----------CKGGI  167 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~-----~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g----------~~~~i  167 (427)
                      ...+.+|||+++++..     .+.+|.+||..++  +.......+  ....++|||||+.++++.          .++.|
T Consensus         5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg--~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG--RVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT--EEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC--cEEEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            3446699999887653     4567999998876  333333322  345799999996555443          14679


Q ss_pred             EEEeccCCCCccccccCcccccccccCCCCcceeEeehhccc------CCCceeeeEeCCCCCCccc-------------
Q 014302          168 CIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQ------NGEQITALSWGPDGRFPGL-------------  228 (427)
Q Consensus       168 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~spdg~~l~~-------------  228 (427)
                      .+||..         ++                .....+..+      .......++|+|+|+++..             
T Consensus        81 ~v~D~~---------t~----------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~  135 (355)
T d2bbkh_          81 EVFDPV---------TL----------------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVD  135 (355)
T ss_dssp             EEECTT---------TC----------------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEE
T ss_pred             EEEECC---------CC----------------CEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeee
Confidence            999987         11                111111100      0122346788888876321             


Q ss_pred             ---CceEEec----------cCCeEEEEEccCCCEEEE-EecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEE
Q 014302          229 ---GTPIRRG----------FGGLSILKWSPTGDYFFA-AKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILL  294 (427)
Q Consensus       229 ---~~~~~~~----------~~~v~~~~~sp~g~~l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~  294 (427)
                         +..+...          ......+.+++|++.++. ...++.+.+++......    .+...+....+++++..+++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  211 (355)
T d2bbkh_         136 LEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP----EDEFLINHPAYSQKAGRLVW  211 (355)
T ss_dssp             TTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC----TTSCBCSCCEEETTTTEEEE
T ss_pred             cCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc----eecceeeeccccCCCCeEEE
Confidence               1111110          112234456666665553 23344455555433322    23334455677788888876


Q ss_pred             EEcCCceeeeeeeCCCCCCc-cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCC----cceeEEEEEEecc
Q 014302          295 AFAGSLTLGSIHFASKPPSL-DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDD----IYKGLIAIYDARR  369 (427)
Q Consensus       295 ~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d----~~~g~i~vwd~~~  369 (427)
                      + ..++.+++|++....... ........ ..............+++++++..+++.......    .....|.+||+.+
T Consensus       212 ~-~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t  289 (355)
T d2bbkh_         212 P-TYTGKIHQIDLSSGDAKFLPAVEALTE-AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  289 (355)
T ss_dssp             E-BTTSEEEEEECTTSSCEECCCEESSCH-HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             e-cCCCeEEEEecCCCcEEEEeccCCccc-ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence            5 455588888877643211 00000000 000000011134568999999998876544321    1125799999999


Q ss_pred             CceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc--eeEEEeeCceEEEEec
Q 014302          370 TPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP--LLSVCWSSGFCCTYPL  419 (427)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~--~l~v~~~~g~i~~~~~  419 (427)
                      ++.+...+.+.        .+.+++|.|+   |.  +++.+..++.|.+|+.
T Consensus       290 ~~~~~~~~~~~--------~~~~~a~spD---G~~~l~v~~~~d~~i~v~D~  330 (355)
T d2bbkh_         290 GERLAKFEMGH--------EIDSINVSQD---EKPLLYALSTGDKTLYIHDA  330 (355)
T ss_dssp             CCEEEEEEEEE--------EECEEEECCS---SSCEEEEEETTTTEEEEEET
T ss_pred             CcEEEEecCCC--------CEEEEEEcCC---CCeEEEEEECCCCEEEEEEC
Confidence            88765443321        2558899986   44  4455666899999985

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.40  E-value=3.5e-11  Score=109.86  Aligned_cols=220  Identities=10%  Similarity=-0.060  Sum_probs=122.1

Q ss_pred             eeeEEcCCCCEEEEEe----------CCCeEEEEEccCCCCcceeeccCCcCC-------eeEEEEccCCCceEEEec--
Q 014302          103 QGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSDSQRD-------VKVLEWRPNGGRSLSVGC--  163 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~----------~d~~v~vwd~~~~~~~~~~~~~~~~~~-------v~~l~~sp~~~~~la~g~--  163 (427)
                      ..++|+|||++|++++          .++.|+|||..+.  +.......+...       ...+.|+|+++.+++...  
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~--~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC--cEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            4689999999998874          3578999999887  333222222222       245788888865544432  


Q ss_pred             CCeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcc-----cC---------
Q 014302          164 KGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPG-----LG---------  229 (427)
Q Consensus       164 ~~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~-----~~---------  229 (427)
                      ++.+.+|+...         .                ....     ......++.++|+|+.+.     .+         
T Consensus       147 ~~~~~~~~~~~---------~----------------~~~~-----~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~  196 (373)
T d2madh_         147 GPAVGLVVQGG---------S----------------SDDQ-----LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG  196 (373)
T ss_pred             CCceEEeeccC---------C----------------eEEE-----EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCC
Confidence            25677887751         0                0010     012233455555554311     00         


Q ss_pred             -ceE---Ee------ccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc---cc----------CCCCeeEEEEC
Q 014302          230 -TPI---RR------GFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW---SS----------TSGFVTGATWD  286 (427)
Q Consensus       230 -~~~---~~------~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~---~~----------~~~~v~~v~~s  286 (427)
                       ...   ..      .......+.+++++.++ ..+.++.+.+|+.........   ..          .......++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (373)
T d2madh_         197 GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYL  275 (373)
T ss_pred             ceeeEEEeeeccccCccceeeeEEECCCceEE-EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEe
Confidence             000   00      01112334456655444 455688999999877653211   11          12234456777


Q ss_pred             CCCCEEEEEEcCC---------ceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEE-EEEecCCC
Q 014302          287 PEGRMILLAFAGS---------LTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLA-VSYKGGDD  356 (427)
Q Consensus       287 pdg~~l~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La-~~~~~~~d  356 (427)
                      +++..++......         +.+..|+.....             ....+..+..+..++|+|||+.++ ++  ++.|
T Consensus       276 ~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~-------------~~~~~~~~~~~~~~a~spDG~~~l~vt--~~~d  340 (373)
T d2madh_         276 KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ-------------TSSQISLGHDVDAISVAQDGGPDLYAL--SAGT  340 (373)
T ss_pred             cCCCeEEEecCCCceEEeecCCCeEEEEECCCCc-------------EEEEecCCCCeeEEEECCCCCEEEEEE--eCCC
Confidence            7777766543332         123333332221             122233445789999999999653 33  4555


Q ss_pred             cceeEEEEEEeccCceE
Q 014302          357 IYKGLIAIYDARRTPLI  373 (427)
Q Consensus       357 ~~~g~i~vwd~~~~~~~  373 (427)
                         ++|+|||+.+++.+
T Consensus       341 ---~~v~v~D~~tg~~~  354 (373)
T d2madh_         341 ---EVLHIYDAGAGDQD  354 (373)
T ss_pred             ---CeEEEEECCCCCEE
Confidence               67999999999876

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.36  E-value=3.4e-10  Score=103.15  Aligned_cols=280  Identities=11%  Similarity=0.050  Sum_probs=157.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCce-EEEecC--CeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRS-LSVGCK--GGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~-la~g~~--~~i~iw~~~~~~~  177 (427)
                      .+.-|+|+|+++.|.++.. +.+..|.++...................++++++++.+ ++++..  +.+..+.+...+.
T Consensus        41 ~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~  119 (365)
T d1jofa_          41 PISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCC
Confidence            4567999999998887754 56778877765222222222233456778899999543 444433  4555554431100


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-EEeccCCeEEEEEccCCCEEEEEec
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-IRRGFGGLSILKWSPTGDYFFAAKF  256 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~  256 (427)
                                                         ......+...+..-..+.. -+.....+.++.|+|||++++++..
T Consensus       120 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~  164 (365)
T d1jofa_         120 -----------------------------------YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL  164 (365)
T ss_dssp             -----------------------------------EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             -----------------------------------cceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeC
Confidence                                               0000111111111000001 1112345789999999999996653


Q ss_pred             -CCcEEEEEcCCCCccc------cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc--cccccccc---cc
Q 014302          257 -DGTFYLWETNTWTSEP------WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL--DAHLLPVD---LP  324 (427)
Q Consensus       257 -dg~v~iwd~~~~~~~~------~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~---~~  324 (427)
                       ...|++|+........      ..........++|+|+|+++++....++.+..+++.......  .....+..   ..
T Consensus       165 g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~  244 (365)
T d1jofa_         165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP  244 (365)
T ss_dssp             TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred             CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccc
Confidence             4578888865443211      113456788999999999999888888899888887643211  11111110   00


Q ss_pred             c--ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCC
Q 014302          325 D--IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQG  402 (427)
Q Consensus       325 ~--~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g  402 (427)
                      .  ............+.++|||++|+++..+.+....+.|..|++.....+... ............+..|+|.|.  .|
T Consensus       245 ~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~-~~~~~~~~~G~~p~~i~~~p~--~G  321 (365)
T d1jofa_         245 DRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQ-LFLSPTPTSGGHSNAVSPCPW--SD  321 (365)
T ss_dssp             CBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEE-EEEEECSSCCTTCCCEEECTT--CT
T ss_pred             ccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeE-eEeeEEEcCCCCccEEEecCC--CC
Confidence            0  001112235678999999999999765544333355777887543322211 112222222234668888874  36


Q ss_pred             ceeEEE-eeCceEEEEec
Q 014302          403 PLLSVC-WSSGFCCTYPL  419 (427)
Q Consensus       403 ~~l~v~-~~~g~i~~~~~  419 (427)
                      ..|.|+ ..++.|.+|.+
T Consensus       322 ~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         322 EWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             TEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEeCCCCeEEEEEE
Confidence            655555 56889999864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=4.1e-09  Score=91.19  Aligned_cols=207  Identities=11%  Similarity=0.169  Sum_probs=122.8

Q ss_pred             ceeeeEEcCCCCEEEEEeCCC---eEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGST---QVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~  176 (427)
                      .+.+.+|||||++||......   .+.+.+....  ... ....+........|+|+|..++..... +...++......
T Consensus        40 ~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~  116 (269)
T d2hqsa1          40 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS  116 (269)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred             ceeeeEECCCCCEEEEEEeeccCcceeeeecccC--cee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccccc
Confidence            467889999999999875542   3444444443  332 333456778899999999666555543 333333222000


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEe
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAK  255 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~  255 (427)
                             .                ....                           ............++++++.++ +..
T Consensus       117 -------~----------------~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  146 (269)
T d2hqsa1         117 -------G----------------QIRQ---------------------------VTDGRSNNTEPTWFPDSQNLAFTSD  146 (269)
T ss_dssp             -------C----------------CEEE---------------------------CCCCSSCEEEEEECTTSSEEEEEEC
T ss_pred             -------c----------------ccee---------------------------eeeccccccccccccccccceeccc
Confidence                   0                0000                           000122334456777777666 555


Q ss_pred             cCCc--EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCC
Q 014302          256 FDGT--FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQ  333 (427)
Q Consensus       256 ~dg~--v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (427)
                      .++.  |.+.++...................|+|+|+.+++.....+...++........            .......+
T Consensus       147 ~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~  214 (269)
T d2hqsa1         147 QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------------VQVLSSTF  214 (269)
T ss_dssp             TTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------------EEECCCSS
T ss_pred             ccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeeccccc------------ceEeecCc
Confidence            5555  455555555444455566778889999999999988777655444443332111            11112233


Q ss_pred             ceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEE
Q 014302          334 GIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISL  375 (427)
Q Consensus       334 ~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~  375 (427)
                      ......|||||++||.....+..   ..|+++++..+....+
T Consensus       215 ~~~~p~~SPDG~~i~f~s~~~~~---~~l~~~~~dg~~~~~l  253 (269)
T d2hqsa1         215 LDETPSLAPNGTMVIYSSSQGMG---SVLNLVSTDGRFKARL  253 (269)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTE---EEEEEEETTSCCEEEC
T ss_pred             cccceEECCCCCEEEEEEcCCCC---cEEEEEECCCCCEEEE
Confidence            56788999999999876444333   6699999988766544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.22  E-value=2.4e-10  Score=104.31  Aligned_cols=228  Identities=10%  Similarity=-0.083  Sum_probs=126.6

Q ss_pred             eeeEEcCCCCEEEEEe----------CCCeEEEEEccCCCCcceeeccC-------CcCCeeEEEEccCCCceEEEec-C
Q 014302          103 QGVSWHQHKHIVAFIS----------GSTQVIVRDYEDSGKDACILTSD-------SQRDVKVLEWRPNGGRSLSVGC-K  164 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~----------~d~~v~vwd~~~~~~~~~~~~~~-------~~~~v~~l~~sp~~~~~la~g~-~  164 (427)
                      ..++|+|||+.|++++          .|++|++||..+.  +.......       .......++|+|||+.++++.. .
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~--~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~  145 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF--LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC--CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCC--cEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC
Confidence            4589999999888764          3678999998876  22221111       1122346899999966665544 4


Q ss_pred             CeEEEEeccCCCCccccccCcccccccccCCCCcceeEeehhcccC------CCceeeeEeCCCCCCccc-----Cc---
Q 014302          165 GGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQN------GEQITALSWGPDGRFPGL-----GT---  230 (427)
Q Consensus       165 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~spdg~~l~~-----~~---  230 (427)
                      +.+.+||+..         +                +....+..+.      ......+++++||+++..     +.   
T Consensus       146 ~~v~~~d~~~---------~----------------~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~  200 (368)
T d1mdah_         146 SAAAGLSVPG---------A----------------SDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAG  200 (368)
T ss_dssp             SCEEEEEETT---------T----------------EEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred             CeEEEEECCC---------C----------------cEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeee
Confidence            8999999871         1                1111111110      112234566677765221     00   


Q ss_pred             -----eEEeccCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-------------cCCCCeeEEEECCCCCEE
Q 014302          231 -----PIRRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-------------STSGFVTGATWDPEGRMI  292 (427)
Q Consensus       231 -----~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-------------~~~~~v~~v~~spdg~~l  292 (427)
                           ....+...+....+.+++..+.+.  ++.+++++..........             ........+++++++..+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~  278 (368)
T d1mdah_         201 IVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI  278 (368)
T ss_dssp             ECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             eeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEE
Confidence                 011122334456677777655533  455666665544321110             011223457889998887


Q ss_pred             EEEEcCCc--------eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCE-EEEEEecCCCcceeEEE
Q 014302          293 LLAFAGSL--------TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGER-LAVSYKGGDDIYKGLIA  363 (427)
Q Consensus       293 ~~~~~~~~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~-La~~~~~~~d~~~g~i~  363 (427)
                      +....++.        .+++|+....+.             ...+..+..+.+++|+|||+. |.++  +..+   ++|+
T Consensus       279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~-------------~~~~~~~~~~~~~a~spDG~~~ly~s--~~~~---~~v~  340 (368)
T d1mdah_         279 MILTVEHSRSCLAAAENTSSVTASVGQT-------------SGPISNGHDSDAIIAAQDGASDNYAN--SAGT---EVLD  340 (368)
T ss_dssp             EEEEEECSSCTTSCEEEEEEEESSSCCE-------------EECCEEEEEECEEEECCSSSCEEEEE--ETTT---TEEE
T ss_pred             EEEecCCCceeecCCceEEEEECCCCcE-------------eEEecCCCceeEEEECCCCCEEEEEE--eCCC---CeEE
Confidence            76544331        344444443310             111222346889999999974 4443  3344   5699


Q ss_pred             EEEeccCceEEEee
Q 014302          364 IYDARRTPLISLSL  377 (427)
Q Consensus       364 vwd~~~~~~~~~~~  377 (427)
                      |||..+++.+...+
T Consensus       341 v~D~~tgk~~~~i~  354 (368)
T d1mdah_         341 IYDAASDQDQSSVE  354 (368)
T ss_dssp             EEESSSCEEEEECC
T ss_pred             EEECCCCCEEEEEE
Confidence            99999998774443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.21  E-value=9.7e-10  Score=103.68  Aligned_cols=150  Identities=13%  Similarity=0.165  Sum_probs=99.5

Q ss_pred             eeeEEcCCCCEEEEEeCCCeEEEEEccCCCCccee---eccCCcCCeeEEEEccCCCceEEEec---------CCeEEEE
Q 014302          103 QGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI---LTSDSQRDVKVLEWRPNGGRSLSVGC---------KGGICIW  170 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~---~~~~~~~~v~~l~~sp~~~~~la~g~---------~~~i~iw  170 (427)
                      ..+.|.++++++..  .|+.+.+||+.++......   ....|...|.+++|||||+.++.+..         .+.+.||
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35689999987764  5788999999988332211   11235678999999999954444331         1345677


Q ss_pred             eccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCE
Q 014302          171 APSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDY  250 (427)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~  250 (427)
                      |+.         ++              .   ..                          .+..+...+..+.|||||++
T Consensus        98 d~~---------~~--------------~---~~--------------------------~l~~~~~~~~~~~~SPDG~~  125 (470)
T d2bgra1          98 DLN---------KR--------------Q---LI--------------------------TEERIPNNTQWVTWSPVGHK  125 (470)
T ss_dssp             ETT---------TT--------------E---EC--------------------------CSSCCCTTEEEEEECSSTTC
T ss_pred             ECC---------CC--------------c---cc--------------------------ccccCCccccccccccCcce
Confidence            776         11              0   00                          12224456788899999999


Q ss_pred             EEEEecCCcEEEEEcCCCCccccc-------------------cCCCCeeEEEECCCCCEEEEEEcCCceeeeeee
Q 014302          251 FFAAKFDGTFYLWETNTWTSEPWS-------------------STSGFVTGATWDPEGRMILLAFAGSLTLGSIHF  307 (427)
Q Consensus       251 l~~~~~dg~v~iwd~~~~~~~~~~-------------------~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~  307 (427)
                      ||... ++.+++|+..+++.....                   ...+....+.|||||++|++...++..+..+.+
T Consensus       126 ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         126 LAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             eeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            99754 788999998877653322                   122345678899999999998766654444443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.02  E-value=7.5e-08  Score=84.82  Aligned_cols=235  Identities=14%  Similarity=0.125  Sum_probs=138.9

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe-cCCeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG-CKGGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g-~~~~i~iw~~~~~~~~~  179 (427)
                      .+..++++|||+++++...+++|..|+-+..    ..........+.+++|+|+| .++++. ..+.+.+|+...     
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~----~~~~~~~~~~~~gla~~~dG-~l~v~~~~~~~~~~~~~~~-----   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN----QQIHATVEGKVSGLAFTSNG-DLVATGWNADSIPVVSLVK-----   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC----EEEEEECSSEEEEEEECTTS-CEEEEEECTTSCEEEEEEC-----
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC----EEEEEcCCCCcceEEEcCCC-CeEEEecCCceEEEEEecc-----
Confidence            4678999999999999988998877654322    22233455679999999999 566655 446677776540     


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                          .                          ...+..+.-.+             .......+.+.++|+++++.+.++.
T Consensus        99 ----~--------------------------~~~~~~~~~~~-------------~~~~~n~i~~~~~g~~~v~~~~~~~  135 (302)
T d2p4oa1          99 ----S--------------------------DGTVETLLTLP-------------DAIFLNGITPLSDTQYLTADSYRGA  135 (302)
T ss_dssp             ----T--------------------------TSCEEEEEECT-------------TCSCEEEEEESSSSEEEEEETTTTE
T ss_pred             ----c--------------------------ccceeeccccC-------------CccccceeEEccCCCEEeecccccc
Confidence                0                          00111111111             1234567888899888777777888


Q ss_pred             EEEEEcCCCCcccc-----------ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcccccccccccccee
Q 014302          260 FYLWETNTWTSEPW-----------SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVS  328 (427)
Q Consensus       260 v~iwd~~~~~~~~~-----------~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (427)
                      +..+|........+           .........+.+  ++..++++....+.++.+.........          ....
T Consensus       136 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~~~~----------~~~~  203 (302)
T d2p4oa1         136 IWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTDKPG----------EPEI  203 (302)
T ss_dssp             EEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTSCBC----------CCEE
T ss_pred             ceeeeccCCcceeEecCCccceeeccCcccccccccc--cCCceeeecCCCCeEEecccccccccc----------cccc
Confidence            88888766542111           122233445555  456777777777788877766531110          0111


Q ss_pred             eccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEE
Q 014302          329 LTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVC  408 (427)
Q Consensus       329 ~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~  408 (427)
                      .........++|+++|+++++   ...+   +.|..++....... +     .........+.+++|.+...++..|-|+
T Consensus       204 ~~~~~~pdgia~d~dG~l~va---~~~~---~~V~~i~p~G~~~~-~-----~~~~~~~~~pt~vafg~~~~D~~~Lyvt  271 (302)
T d2p4oa1         204 FVEQTNIDDFAFDVEGNLYGA---THIY---NSVVRIAPDRSTTI-I-----AQAEQGVIGSTAVAFGQTEGDCTAIYVV  271 (302)
T ss_dssp             EEESCCCSSEEEBTTCCEEEE---CBTT---CCEEEECTTCCEEE-E-----ECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred             ccCCCCCcceEECCCCCEEEE---EcCC---CcEEEECCCCCEEE-E-----EecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence            122235678999999997766   3333   44777765433222 1     1111122346789997654456677777


Q ss_pred             eeCc
Q 014302          409 WSSG  412 (427)
Q Consensus       409 ~~~g  412 (427)
                      .+.|
T Consensus       272 t~~g  275 (302)
T d2p4oa1         272 TNGG  275 (302)
T ss_dssp             ECTT
T ss_pred             CCCC
Confidence            5543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.02  E-value=1.2e-08  Score=92.80  Aligned_cols=74  Identities=8%  Similarity=-0.087  Sum_probs=49.3

Q ss_pred             eeEEEECCCCCEEEEEEecCCCc---ceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc--eeEEEe
Q 014302          335 IEKIAWDASGERLAVSYKGGDDI---YKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP--LLSVCW  409 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~---~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~--~l~v~~  409 (427)
                      ...++++|++..+.+........   ....|.+||..+++.+...+.+.        .+..++|.|+   |.  +++.+.
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~--------~~~~~a~spD---G~~~ly~s~~  334 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--------DSDAIIAAQD---GASDNYANSA  334 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--------EECEEEECCS---SSCEEEEEET
T ss_pred             ceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCC--------ceeEEEECCC---CCEEEEEEeC
Confidence            45688999999887754433211   12569999999988764443332        1447888886   53  445666


Q ss_pred             eCceEEEEec
Q 014302          410 SSGFCCTYPL  419 (427)
Q Consensus       410 ~~g~i~~~~~  419 (427)
                      .++.|.+|+.
T Consensus       335 ~~~~v~v~D~  344 (368)
T d1mdah_         335 GTEVLDIYDA  344 (368)
T ss_dssp             TTTEEEEEES
T ss_pred             CCCeEEEEEC
Confidence            6899999984

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.00  E-value=4.5e-09  Score=96.30  Aligned_cols=152  Identities=11%  Similarity=0.100  Sum_probs=84.5

Q ss_pred             EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC---------------------C-CCcccc
Q 014302          260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK---------------------P-PSLDAH  317 (427)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~---------------------~-~~~~~~  317 (427)
                      +..+|..+.+.............+.|+|||+++++++.+......+.....                     + ....++
T Consensus       158 ~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~  237 (441)
T d1qnia2         158 FTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDS  237 (441)
T ss_dssp             EEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred             EEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCC
Confidence            455777776654333344567899999999999987755432211111000                     0 000000


Q ss_pred             c-ccccc----ccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE-E--EeeeeeeeC-CCCCC
Q 014302          318 L-LPVDL----PDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI-S--LSLIGFIRG-PGDNP  388 (427)
Q Consensus       318 ~-~~~~~----~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~-~--~~~~~~~~~-~~~~~  388 (427)
                      . ..++.    .-...+..+.....+.++|||++++++  +..+   ++|.|||+...... .  +.+...+.+ +....
T Consensus       238 ~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~--~~~~---~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl  312 (441)
T d1qnia2         238 KVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIAN--GKLS---PTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL  312 (441)
T ss_dssp             CCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEE--CTTS---SBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS
T ss_pred             CcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEe--CCcC---CcEEEEEeehhhhHhhccCCcceEEEeeccccc
Confidence            0 00110    111233445567889999999999886  6666   67999998652210 0  011111111 12223


Q ss_pred             CceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          389 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       389 ~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .++..+|.++   |..++....|.+|..|.+
T Consensus       313 gplh~~fd~~---g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         313 GPLHTTFDGR---GNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             CEEEEEECSS---SEEEEEETTTTEEEEEEH
T ss_pred             CcccceecCC---ceEEEcccccceEEEecc
Confidence            4666778775   667777777888877764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.95  E-value=9.5e-08  Score=86.56  Aligned_cols=124  Identities=13%  Similarity=0.152  Sum_probs=76.8

Q ss_pred             CCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccc--------------------cCCCCeeEEEECCCCCEEEEE
Q 014302          237 GGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS--------------------STSGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~--------------------~~~~~v~~v~~spdg~~l~~~  295 (427)
                      .+.+.++|+|++++++ +...++.|.+|++...+.....                    ........+.++|||++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            4677899999999887 5556889999998765432110                    122235678999999999887


Q ss_pred             EcCCc-----eeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECC-CCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          296 FAGSL-----TLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       296 ~~~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      ...+.     .+..+.+.... .+.....     .......+.....++++| +|++|+++  +..+   +.|.+|++..
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g-~~~~~~~-----~~~~~~~G~~p~~i~~~p~~G~~l~va--~~~s---~~v~v~~~~~  341 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCG-SIEKQLF-----LSPTPTSGGHSNAVSPCPWSDEWMAIT--DDQE---GWLEIYRWKD  341 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTS-CEEEEEE-----EEECSSCCTTCCCEEECTTCTTEEEEE--CSSS---CEEEEEEEET
T ss_pred             cccCCCccceEEEEEEecCCC-ceeeEeE-----eeEEEcCCCCccEEEecCCCCCEEEEE--eCCC---CeEEEEEEeC
Confidence            54332     24444443321 1100000     000111234668899998 89999996  4444   6799999865


Q ss_pred             Cc
Q 014302          370 TP  371 (427)
Q Consensus       370 ~~  371 (427)
                      ..
T Consensus       342 ~~  343 (365)
T d1jofa_         342 EF  343 (365)
T ss_dssp             TE
T ss_pred             Cc
Confidence            54

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.82  E-value=1.8e-09  Score=99.00  Aligned_cols=243  Identities=8%  Similarity=-0.004  Sum_probs=133.9

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcce-eeccCCcCCeeEEEEccCCCce-EEEecCCeEEE------Ee
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDAC-ILTSDSQRDVKVLEWRPNGGRS-LSVGCKGGICI------WA  171 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~-~~~~~~~~~v~~l~~sp~~~~~-la~g~~~~i~i------w~  171 (427)
                      .......+|||++|.+. ..+.+|.++|+.+.  +.. .+...+......++|+|+++.. ++...+..+.+      |+
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~--k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~  150 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARIRLDIM--KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFS  150 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTT--EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCC
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEEECCCC--cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccc
Confidence            34455678999988665 56789999999887  222 2233456788999999999654 33444444432      11


Q ss_pred             ccCCCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCce-------EE----eccCCe-
Q 014302          172 PSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTP-------IR----RGFGGL-  239 (427)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-------~~----~~~~~v-  239 (427)
                      ..         .. ...+..+.....   .....+.  .......+.++|||+++.....       +.    .-...+ 
T Consensus       151 ~~---------~~-~~~~~~iD~~t~---~v~~qI~--v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~  215 (441)
T d1qnia2         151 LD---------NS-YTMFTAIDAETM---DVAWQVI--VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVV  215 (441)
T ss_dssp             GG---------GE-EEEEEEEETTTC---SEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEE
T ss_pred             cc---------cc-cceEEeecCccc---eeeEEEe--cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEE
Confidence            10         00 000000000000   0111111  1234568899999987431110       00    000011 


Q ss_pred             -----EEEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302          240 -----SILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  314 (427)
Q Consensus       240 -----~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~  314 (427)
                           ..+.++|+|+++..++ ++.+.+++....+...+.........+.++|||+++++++..++++.+|++......+
T Consensus       216 v~n~p~~~~~~~dGk~~~v~~-~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~  294 (441)
T d1qnia2         216 VFNVERIAAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLF  294 (441)
T ss_dssp             EEEHHHHHHHHHTTCCBCCTT-CCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHT
T ss_pred             eCCccceEEEecCCCEEEeCC-CCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHh
Confidence                 1122568998776643 6677777666555444443344567899999999999988888899999987632222


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      +++..+...- ......+-.....+|+++|..+.+   ..-|   ..|..|++.
T Consensus       295 ~~~~~~~~~~-~~~~~~glgplh~~fd~~g~~yts---~~~d---s~v~kw~~~  341 (441)
T d1qnia2         295 EDKIELRDTI-VAEPELGLGPLHTTFDGRGNAYTT---LFID---SQVCKWNIA  341 (441)
T ss_dssp             TTSSCGGGGE-EECCBCCSCEEEEEECSSSEEEEE---ETTT---TEEEEEEHH
T ss_pred             hccCCcceEE-EeecccccCcccceecCCceEEEc---cccc---ceEEEeccc
Confidence            2221111000 000111124466789999977766   3334   459999984

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.80  E-value=5.1e-06  Score=73.27  Aligned_cols=253  Identities=13%  Similarity=0.174  Sum_probs=134.7

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEec-C--CeEEEEeccCCCC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGC-K--GGICIWAPSYPGN  177 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~-~--~~i~iw~~~~~~~  177 (427)
                      .+..++|.++|++.++-..++.|..|+.+..  ...............+++++|| +++++.. +  ....++.++..+.
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~--~~~~~~~~~~~~p~gla~~~dG-~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK--EIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTC--CEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCC--eEEEEEeCCCCCeeEEEECCCC-CEEEEecCCCccceeEEEEcCCCc
Confidence            4568999999997777777888877766554  3333333445567899999999 5555432 1  2333444431000


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec-
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-  256 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-  256 (427)
                                           .....  ....                        ........+++.++|++.++... 
T Consensus       118 ---------------------~~~~~--~~~~------------------------~~~~~~nd~~~d~~G~l~vtd~~~  150 (319)
T d2dg1a1         118 ---------------------NLQDI--IEDL------------------------STAYCIDDMVFDSKGGFYFTDFRG  150 (319)
T ss_dssp             ---------------------SCEEE--ECSS------------------------SSCCCEEEEEECTTSCEEEEECCC
T ss_pred             ---------------------eeeee--ccCC------------------------CcccCCcceeEEeccceeeccccc
Confidence                                 00000  0000                        00113445667777765443221 


Q ss_pred             -----CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeecc
Q 014302          257 -----DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTG  331 (427)
Q Consensus       257 -----dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (427)
                           .+.+..++............-.....++|+||++.|+++....+.|+.+++............    ........
T Consensus       151 ~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~----~~~~~~~~  226 (319)
T d2dg1a1         151 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA----TIPYYFTG  226 (319)
T ss_dssp             BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE----EEEEECCS
T ss_pred             ccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccc----eeeeccCC
Confidence                 122444443332222222333445789999999988888777778888877643111100000    00011112


Q ss_pred             CCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCC----CCCCCceeEEeccCCCCCceeEE
Q 014302          332 SQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGP----GDNPKPVAFSFHDKFKQGPLLSV  407 (427)
Q Consensus       332 ~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~f~~~~~~g~~l~v  407 (427)
                      ......|+++++|++.++.+ +.     +.|.+|+- .++.+.     .+.-+    +....+.|++|.+.   +..|-+
T Consensus       227 ~~~PdGl~vD~~G~l~Va~~-~~-----g~V~~~~p-~G~~l~-----~i~~P~~~~~~~~~~~~~~~~~~---~~~~~~  291 (319)
T d2dg1a1         227 HEGPDSCCIDSDDNLYVAMY-GQ-----GRVLVFNK-RGYPIG-----QILIPGRDEGHMLRSTHPQFIPG---TNQLII  291 (319)
T ss_dssp             SSEEEEEEEBTTCCEEEEEE-TT-----TEEEEECT-TSCEEE-----EEECTTGGGTCSCBCCEEEECTT---SCEEEE
T ss_pred             ccceeeeeEcCCCCEEEEEc-CC-----CEEEEECC-CCcEEE-----EEeCCCcCCCcCceeeeEEEeCC---CCEEEE
Confidence            22457899999999776642 22     56999995 455442     22222    22334668999875   334444


Q ss_pred             Eee------CceEEEEecccc
Q 014302          408 CWS------SGFCCTYPLIFR  422 (427)
Q Consensus       408 ~~~------~g~i~~~~~~~~  422 (427)
                      ...      .|.|..++.-.+
T Consensus       292 t~~~~~~~~~g~l~~~~~~~~  312 (319)
T d2dg1a1         292 CSNDIEMGGGSMLYTVNGFAK  312 (319)
T ss_dssp             EEECGGGTCCEEEEEEECSSC
T ss_pred             EcCCCCcCCceeEEEEeCCCc
Confidence            443      245555554443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3e-07  Score=85.92  Aligned_cols=219  Identities=12%  Similarity=0.122  Sum_probs=117.3

Q ss_pred             eEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccC-CcCCeeEEEEccCCCceEEEec---------CCeEEEEeccC
Q 014302          105 VSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSD-SQRDVKVLEWRPNGGRSLSVGC---------KGGICIWAPSY  174 (427)
Q Consensus       105 l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~la~g~---------~~~i~iw~~~~  174 (427)
                      ..|.+++.++.. ..+|.+.+|+..++.......... ....+....||||++.+|....         .+.+.++|+. 
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~-   99 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP-   99 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS-
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc-
Confidence            368888876643 467889999988773322221111 3346788899999965555432         1345566665 


Q ss_pred             CCCccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEE
Q 014302          175 PGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAA  254 (427)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~  254 (427)
                              ++              ....+.....                          ....+....|||||+.||-.
T Consensus       100 --------~~--------------~~~~l~~~~~--------------------------~~~~l~~~~wSPDG~~iafv  131 (465)
T d1xfda1         100 --------HG--------------DPQSLDPPEV--------------------------SNAKLQYAGWGPKGQQLIFI  131 (465)
T ss_dssp             --------SC--------------CCEECCCTTC--------------------------CSCCCSBCCBCSSTTCEEEE
T ss_pred             --------CC--------------ceeeccCccC--------------------------CccccceeeeccCCceEEEE
Confidence                    11              1011110000                          01123345577777777644


Q ss_pred             ecCCcEEEEEcCCCCccccc--cC-----------------CCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC----C
Q 014302          255 KFDGTFYLWETNTWTSEPWS--ST-----------------SGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK----P  311 (427)
Q Consensus       255 ~~dg~v~iwd~~~~~~~~~~--~~-----------------~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~----~  311 (427)
                      . ++.|.+.+...+...+..  +.                 .+.-.++-|||||++||+...++..+..+.+...    .
T Consensus       132 ~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~  210 (465)
T d1xfda1         132 F-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY  210 (465)
T ss_dssp             E-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred             e-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeeccccccccc
Confidence            3 556666666554432222  11                 1122567899999999998777665555554321    1


Q ss_pred             CCccccccc-------------ccccc--cee--ec------cCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          312 PSLDAHLLP-------------VDLPD--IVS--LT------GSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       312 ~~~~~~~~~-------------~~~~~--~~~--~~------~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                      +.......|             +++..  ...  ..      ...-+..+.|+|++++++....  .+++...|.++|..
T Consensus       211 p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~n--R~q~~~~i~~~d~~  288 (465)
T d1xfda1         211 PTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN--RAQNVSILTLCDAT  288 (465)
T ss_dssp             CCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE--TTSCEEEEEEEETT
T ss_pred             ceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEc--cccccceEEEEcCC
Confidence            111111111             11110  000  00      0113678999999987766533  23333678899999


Q ss_pred             cCceEEEe
Q 014302          369 RTPLISLS  376 (427)
Q Consensus       369 ~~~~~~~~  376 (427)
                      ++.+..+.
T Consensus       289 tg~~~~~~  296 (465)
T d1xfda1         289 TGVCTKKH  296 (465)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEE
Confidence            98876543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.5e-06  Score=80.99  Aligned_cols=74  Identities=11%  Similarity=0.095  Sum_probs=49.5

Q ss_pred             CCceeeeEEcCCCCEEEEEe---------CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEE
Q 014302           99 EVDLQGVSWHQHKHIVAFIS---------GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICI  169 (427)
Q Consensus        99 ~~~V~~l~~sp~g~~lat~~---------~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~i  169 (427)
                      ...+....||||+++|+...         ..+.+.|+|+..+..............+....|||||+ .||-..++.+.+
T Consensus        60 ~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~-~iafv~~~nl~~  138 (465)
T d1xfda1          60 SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQ-QLIFIFENNIYY  138 (465)
T ss_dssp             TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTT-CEEEEETTEEEE
T ss_pred             ccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCc-eEEEEecceEEE
Confidence            34567888999999888763         34678889988773222222223344567789999995 555555666776


Q ss_pred             Eecc
Q 014302          170 WAPS  173 (427)
Q Consensus       170 w~~~  173 (427)
                      .+..
T Consensus       139 ~~~~  142 (465)
T d1xfda1         139 CAHV  142 (465)
T ss_dssp             ESSS
T ss_pred             EecC
Confidence            6654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.70  E-value=4.7e-06  Score=73.35  Aligned_cols=124  Identities=15%  Similarity=0.200  Sum_probs=71.9

Q ss_pred             CeeEEEECCCCC----EEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecC
Q 014302          279 FVTGATWDPEGR----MILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGG  354 (427)
Q Consensus       279 ~v~~v~~spdg~----~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~  354 (427)
                      ....++|+|++.    +|+++....+.++.+++... ..+........+.    ....+....|+++.+|+..++.+ +.
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~-g~~~~~~~~~~~~----~~~~~~pdGiavD~~GnlyVa~~-~~  246 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP-AKIENKKVWGHIP----GTHEGGADGMDFDEDNNLLVANW-GS  246 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET-TEEEEEEEEEECC----CCSSCEEEEEEEBTTCCEEEEEE-TT
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCc-cccceeeEEEEcc----ccccccceeeEEecCCcEEEEEc-CC
Confidence            346788988765    56666666667777766432 1111000000000    00112356899999999876643 22


Q ss_pred             CCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCc-eeEEEeeCceEEEEeccccC
Q 014302          355 DDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGP-LLSVCWSSGFCCTYPLIFRS  423 (427)
Q Consensus       355 ~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~-~l~v~~~~g~i~~~~~~~~~  423 (427)
                           +.|.+||...+....     .+..+.  ..+.+++|.|+   +. |......+|+|..+++--++
T Consensus       247 -----g~I~~~dp~~g~~~~-----~i~~p~--~~~t~~afg~d---~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         247 -----SHIEVFGPDGGQPKM-----RIRCPF--EKPSNLHFKPQ---TKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             -----TEEEEECTTCBSCSE-----EEECSS--SCEEEEEECTT---SSEEEEEETTTTEEEEEECSSCB
T ss_pred             -----CEEEEEeCCCCEEEE-----EEECCC--CCEEEEEEeCC---CCEEEEEECCCCcEEEEECCCCC
Confidence                 459999987766532     222222  23668999875   44 44445567999999876554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.67  E-value=6.6e-06  Score=70.21  Aligned_cols=240  Identities=13%  Similarity=0.047  Sum_probs=134.4

Q ss_pred             ceeeeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEE-EEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGIC-IWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~-iw~~~~~~~~  178 (427)
                      .-+.++++++|++.++. +..+.+..++....  ........-......+++++++ .++++...+.+. +++-.   + 
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~p~gvav~~~g-~i~v~d~~~~~i~~~~~~---~-   87 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGST--GTTVLPFNGLYQPQGLAVDGAG-TVYVTDFNNRVVTLAAGS---N-   87 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC------CEEECCCCSCCSCCCEEECTTC-CEEEEETTTEEEEECTTC---S-
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCc--eEEEeccCCccCceEEEEcCCC-CEEEeeeeeceeeeeeec---c-
Confidence            45789999999955544 45577766554433  2222222222345788999998 666666554433 33221   0 


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDG  258 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg  258 (427)
                           .                ....  ..                         ........+++.++|+++++-....
T Consensus        88 -----~----------------~~~~--~~-------------------------~~~~~p~~iavd~~g~i~v~d~~~~  119 (260)
T d1rwia_          88 -----N----------------QTVL--PF-------------------------DGLNYPEGLAVDTQGAVYVADRGNN  119 (260)
T ss_dssp             -----C----------------CEEC--CC-------------------------CSCCSEEEEEECTTCCEEEEEGGGT
T ss_pred             -----c----------------eeee--ee-------------------------eeeeecccccccccceeEeeccccc
Confidence                 0                0000  00                         0122456788889888777666666


Q ss_pred             cEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeE
Q 014302          259 TFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEK  337 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  337 (427)
                      .+..++.......... ........++++++|+.+++ ......+..++.......   .         .....-.....
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~-~~~~~~i~~~d~~~~~~~---~---------~~~~~~~~p~g  186 (260)
T d1rwia_         120 RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVT-DTDNNRVVKLEAESNNQV---V---------LPFTDITAPWG  186 (260)
T ss_dssp             EEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEE-EGGGTEEEEECTTTCCEE---E---------CCCSSCCSEEE
T ss_pred             cccccccccceeeeeeecccCCcceeeecCCCCEeee-ccccccccccccccceee---e---------eeccccCCCcc
Confidence            6777776554432222 33345678999999986654 344445655544332100   0         00011225688


Q ss_pred             EEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEeeCceEEEE
Q 014302          338 IAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTY  417 (427)
Q Consensus       338 v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~  417 (427)
                      |+++++|+++++   +...   +.|..++.........       .......|..|++.++   |.++.+-+.+++|..+
T Consensus       187 i~~d~~g~l~vs---d~~~---~~i~~~~~~~~~~~~~-------~~~~~~~P~~i~~d~~---g~l~vad~~~~rI~~i  250 (260)
T d1rwia_         187 IAVDEAGTVYVT---EHNT---NQVVKLLAGSTTSTVL-------PFTGLNTPLAVAVDSD---RTVYVADRGNDRVVKL  250 (260)
T ss_dssp             EEECTTCCEEEE---ETTT---TEEEEECTTCSCCEEC-------CCCSCCCEEEEEECTT---CCEEEEEGGGTEEEEE
T ss_pred             ceeeeeeeeeee---ecCC---CEEEEEeCCCCeEEEE-------ccCCCCCeEEEEEeCC---CCEEEEECCCCEEEEE
Confidence            999999987766   3333   4477776544332211       1112234778999874   6788888889999988


Q ss_pred             eccccCC
Q 014302          418 PLIFRSH  424 (427)
Q Consensus       418 ~~~~~~~  424 (427)
                      +-+=..|
T Consensus       251 ~~~~~~~  257 (260)
T d1rwia_         251 TSLEHHH  257 (260)
T ss_dssp             CCCGGGG
T ss_pred             eCCCCcc
Confidence            7544433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.66  E-value=4.7e-07  Score=78.10  Aligned_cols=54  Identities=7%  Similarity=0.126  Sum_probs=37.4

Q ss_pred             eEEcCC--CCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe
Q 014302          105 VSWHQH--KHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG  162 (427)
Q Consensus       105 l~~sp~--g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g  162 (427)
                      +..+|+  |+.+|..+ ++.|.+.|+..+  ....+ ..+...+...+|||||+.++.+.
T Consensus         4 ~~~sPdi~G~~v~f~~-~~dl~~~d~~~g--~~~~L-t~~~~~~~~p~~SPDG~~iaf~~   59 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVC-CDDLWEHDLKSG--STRKI-VSNLGVINNARFFPDGRKIAIRV   59 (281)
T ss_dssp             CCEEEEEETTEEEEEE-TTEEEEEETTTC--CEEEE-ECSSSEEEEEEECTTSSEEEEEE
T ss_pred             cccCCCCCCCEEEEEe-CCcEEEEECCCC--CEEEE-ecCCCcccCEEECCCCCEEEEEE
Confidence            356899  99988775 456766677765  44444 34556789999999996655544

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=7.7e-06  Score=69.83  Aligned_cols=122  Identities=13%  Similarity=0.098  Sum_probs=70.3

Q ss_pred             ccCCeEEEEEccCCCEEEEE-ecCCcEEEEEcCCCC--ccccccCCCCeeEEEECCCCCEEEEEEcCCce--eeeeeeCC
Q 014302          235 GFGGLSILKWSPTGDYFFAA-KFDGTFYLWETNTWT--SEPWSSTSGFVTGATWDPEGRMILLAFAGSLT--LGSIHFAS  309 (427)
Q Consensus       235 ~~~~v~~~~~sp~g~~l~~~-~~dg~v~iwd~~~~~--~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~--i~~~~~~~  309 (427)
                      +.+......|+|+|+.++.. ..++...++......  ...............+++++..++......+.  ++..++..
T Consensus        81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~  160 (269)
T d2hqsa1          81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING  160 (269)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred             eecccccceecCCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeeccc
Confidence            34566778899999988843 344444444333322  23333455556677889999888777655543  33333333


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCce
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPL  372 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~  372 (427)
                      ...             ..............|+|++++++........   -.|.+.+...+..
T Consensus       161 ~~~-------------~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~---~~i~~~~~~~~~~  207 (269)
T d2hqsa1         161 GAP-------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQ---QHIAKQDLATGGV  207 (269)
T ss_dssp             SCC-------------EECCCSSSEEEEEEECTTSSEEEEEEECSSC---EEEEEEETTTCCE
T ss_pred             ccc-------------eeeecccccccccccccccceeEEEeecCCc---eeeeEeecccccc
Confidence            210             0001112356778999999999986555443   3466666655543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.46  E-value=0.0001  Score=63.18  Aligned_cols=155  Identities=10%  Similarity=0.073  Sum_probs=89.6

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCcccc--ccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCcc
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPW--SSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLD  315 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~  315 (427)
                      ....+++.++|+.+++....+.+.+++........+  ..+......+++.++|+.+++ ......++.++......   
T Consensus       115 ~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~-d~~~~~V~~~d~~G~~~---  190 (279)
T d1q7fa_         115 HPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFIS-DNRAHCVKVFNYEGQYL---  190 (279)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEE-EGGGTEEEEEETTCCEE---
T ss_pred             ccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEee-eccccceeeeecCCcee---
Confidence            345677778887777666666677776543221221  134566788899998876554 45555666655433200   


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEe
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSF  395 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  395 (427)
                      ...     .   ....-.....|+++++|+.+++   +...+  +.|.+|+. .+..+.     .+........+..+++
T Consensus       191 ~~~-----g---~~g~~~~P~giavD~~G~i~Va---d~~~~--~~v~~f~~-~G~~~~-----~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         191 RQI-----G---GEGITNYPIGVGINSNGEILIA---DNHNN--FNLTIFTQ-DGQLIS-----ALESKVKHAQCFDVAL  251 (279)
T ss_dssp             EEE-----S---CTTTSCSEEEEEECTTCCEEEE---ECSSS--CEEEEECT-TSCEEE-----EEEESSCCSCEEEEEE
T ss_pred             eee-----c---ccccccCCcccccccCCeEEEE---ECCCC--cEEEEECC-CCCEEE-----EEeCCCCCCCEeEEEE
Confidence            000     0   0001125688999999997765   33211  46889984 455432     1222223334778888


Q ss_pred             ccCCCCCceeEEEeeCceEEEEec
Q 014302          396 HDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       396 ~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      .++   |.++ |...+.+|.+|.+
T Consensus       252 ~~d---G~l~-V~~~n~~v~~fr~  271 (279)
T d1q7fa_         252 MDD---GSVV-LASKDYRLYIYRY  271 (279)
T ss_dssp             ETT---TEEE-EEETTTEEEEEEC
T ss_pred             eCC---CcEE-EEeCCCeEEEEEe
Confidence            875   6655 4456889999974

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.46  E-value=0.00033  Score=60.49  Aligned_cols=234  Identities=13%  Similarity=0.100  Sum_probs=133.6

Q ss_pred             eeEEcCCCCEEEEE-eCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccccc
Q 014302          104 GVSWHQHKHIVAFI-SGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVR  182 (427)
Q Consensus       104 ~l~~sp~g~~lat~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~  182 (427)
                      +..|++....|... -..+.|.-||..++  .....  .....+.++++.++| .++++. .+++.++|..         
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g--~~~~~--~~~~~~~~i~~~~dg-~l~va~-~~gl~~~d~~---------   86 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASG--RKTVH--ALPFMGSALAKISDS-KQLIAS-DDGLFLRDTA---------   86 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTT--EEEEE--ECSSCEEEEEEEETT-EEEEEE-TTEEEEEETT---------
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCC--eEEEE--ECCCCcEEEEEecCC-CEEEEE-eCccEEeecc---------
Confidence            56788866544443 35688888887766  22222  234568899999998 566544 4678888876         


Q ss_pred             cCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec----CC
Q 014302          183 SGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF----DG  258 (427)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~----dg  258 (427)
                      ++              +...+.....              +.          ....+..+.+.|+|++.++...    .+
T Consensus        87 tg--------------~~~~l~~~~~--------------~~----------~~~~~nd~~vd~~G~iw~~~~~~~~~~~  128 (295)
T d2ghsa1          87 TG--------------VLTLHAELES--------------DL----------PGNRSNDGRMHPSGALWIGTMGRKAETG  128 (295)
T ss_dssp             TC--------------CEEEEECSST--------------TC----------TTEEEEEEEECTTSCEEEEEEETTCCTT
T ss_pred             cc--------------eeeEEeeeec--------------CC----------CcccceeeEECCCCCEEEEecccccccc
Confidence            11              1111110000              00          0113556777888876664332    22


Q ss_pred             cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          259 TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       259 ~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      .-.+|.+..++.......-.....++|+++++.++++.+..+.|+.+++........+.....    .......+....+
T Consensus       129 ~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~----~~~~~~~g~pdG~  204 (295)
T d2ghsa1         129 AGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF----IDSTGIKGGMDGS  204 (295)
T ss_dssp             CEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE----EECTTSSSEEEEE
T ss_pred             ceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEE----eccCcccccccce
Confidence            345666665554333333445678999999999988888777888888754322111111000    0000122357889


Q ss_pred             EECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCceeEEEee
Q 014302          339 AWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLLSVCWS  410 (427)
Q Consensus       339 ~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l~v~~~  410 (427)
                      +++.+|.+.++.+.+      +.|..||- .++.+.     .+.-+..  .+.+++|...  +...|=|.++
T Consensus       205 ~vD~~GnlWva~~~~------g~V~~~dp-~G~~~~-----~i~lP~~--~~T~~~FGG~--d~~~LyvTta  260 (295)
T d2ghsa1         205 VCDAEGHIWNARWGE------GAVDRYDT-DGNHIA-----RYEVPGK--QTTCPAFIGP--DASRLLVTSA  260 (295)
T ss_dssp             EECTTSCEEEEEETT------TEEEEECT-TCCEEE-----EEECSCS--BEEEEEEEST--TSCEEEEEEB
T ss_pred             EEcCCCCEEeeeeCC------CceEEecC-CCcEee-----EecCCCC--ceEEEEEeCC--CCCEEEEEEC
Confidence            999999987765444      44999995 455442     2333332  3678889753  2344545443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.30  E-value=4.9e-05  Score=66.13  Aligned_cols=197  Identities=12%  Similarity=0.067  Sum_probs=109.5

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCccee-eccCCcCCeeEEEEccCCCceEEEec-CCeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGC-KGGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~la~g~-~~~i~iw~~~~~~~~  178 (427)
                      .+.+++|+|+|+++++...++.+.+|+.......... ...........+++.+++ +++++.. .+.+..++..     
T Consensus        69 ~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~~~~~i~~~~~~-----  142 (302)
T d2p4oa1          69 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVV-----  142 (302)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETT-----
T ss_pred             CcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCC-CEEeeccccccceeeecc-----
Confidence            6889999999999888888888888877665222222 222344568899999999 5655544 3655555544     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-EEecC
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-AAKFD  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d  257 (427)
                          .+              ....              ....+......    ..........+.+  ++..++ +.+..
T Consensus       143 ----~~--------------~~~~--------------~~~~~~~~~~~----~~~~~~~~ngi~~--~~~~l~~~~~~~  184 (302)
T d2p4oa1         143 ----QP--------------SGSI--------------WLEHPMLARSN----SESVFPAANGLKR--FGNFLYVSNTEK  184 (302)
T ss_dssp             ----TT--------------EEEE--------------EEECGGGSCSS----TTCCSCSEEEEEE--ETTEEEEEETTT
T ss_pred             ----CC--------------ccee--------------EecCCccceee----ccCcccccccccc--cCCceeeecCCC
Confidence                00              0000              00000000000    0001112334444  445555 66778


Q ss_pred             CcEEEEEcCCCCccc---cccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          258 GTFYLWETNTWTSEP---WSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       258 g~v~iwd~~~~~~~~---~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      +.|+.+++.......   ..........+++.++|+++++ ...++.+..+.-..+...+..           ....-..
T Consensus       185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va-~~~~~~V~~i~p~G~~~~~~~-----------~~~~~~~  252 (302)
T d2p4oa1         185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA-THIYNSVVRIAPDRSTTIIAQ-----------AEQGVIG  252 (302)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE-CBTTCCEEEECTTCCEEEEEC-----------GGGTCTT
T ss_pred             CeEEeccccccccccccccccCCCCCcceEECCCCCEEEE-EcCCCcEEEECCCCCEEEEEe-----------cCCCCCC
Confidence            889888887654321   1133445678999999986554 444546665543322100000           0001125


Q ss_pred             eeEEEE---CCCCCEEEEEEec
Q 014302          335 IEKIAW---DASGERLAVSYKG  353 (427)
Q Consensus       335 i~~v~~---sp~g~~La~~~~~  353 (427)
                      .++++|   ++|++.|.++..+
T Consensus       253 pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         253 STAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEEEECCSTTTTTEEEEEECT
T ss_pred             ceEEEEcCCCCCCCEEEEECCC
Confidence            789999   6788888775444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.28  E-value=0.0001  Score=64.47  Aligned_cols=209  Identities=10%  Similarity=0.124  Sum_probs=112.3

Q ss_pred             eeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCc----CCeeEEEEccCCCceEEEecCCeEEEEeccCCCC
Q 014302          102 LQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQ----RDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGN  177 (427)
Q Consensus       102 V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~----~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~  177 (427)
                      -..++|.++|.+|.++.....+...+.+..  ..........    ...+.+++.|+| .+.++...+....|+..    
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~--~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~----  145 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGT--FEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYT----  145 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSC--EEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCC----
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCc--EEEEEeccccccccCCCcEEEECCCC-CEEEecCccCccccccc----
Confidence            467999999998888877777877776554  2222111111    135778899888 55554322221111111    


Q ss_pred             ccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCC----EEE-
Q 014302          178 AASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGD----YFF-  252 (427)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~----~l~-  252 (427)
                                                ..... ...  ....+.++|+...    +......-..++|+|+++    .|+ 
T Consensus       146 --------------------------~~~~~-~~G--~v~~~~~dg~~~~----~~~~~~~pNGi~~~~d~d~~~~~lyv  192 (314)
T d1pjxa_         146 --------------------------RSMQE-KFG--SIYCFTTDGQMIQ----VDTAFQFPNGIAVRHMNDGRPYQLIV  192 (314)
T ss_dssp             --------------------------BTTSS-SCE--EEEEECTTSCEEE----EEEEESSEEEEEEEECTTSCEEEEEE
T ss_pred             --------------------------ceecc-CCc--eEEEEeecCceeE----eeCCcceeeeeEECCCCCcceeEEEE
Confidence                                      00000 011  1223455554322    111223345788998875    455 


Q ss_pred             EEecCCcEEEEEcCCCCcc----ccc----cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccc
Q 014302          253 AAKFDGTFYLWETNTWTSE----PWS----STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLP  324 (427)
Q Consensus       253 ~~~~dg~v~iwd~~~~~~~----~~~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  324 (427)
                      +-+..+.|+.||+......    .+.    ........+++..+|+..++. ...+.|..++-.....  ...       
T Consensus       193 ~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~-~~~g~I~~~dp~~g~~--~~~-------  262 (314)
T d1pjxa_         193 AETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN-WGSSHIEVFGPDGGQP--KMR-------  262 (314)
T ss_dssp             EETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE-ETTTEEEEECTTCBSC--SEE-------
T ss_pred             EeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE-cCCCEEEEEeCCCCEE--EEE-------
Confidence            5567788999987644321    111    122345679999999876543 4444555554332211  000       


Q ss_pred             cceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEec
Q 014302          325 DIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDAR  368 (427)
Q Consensus       325 ~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~  368 (427)
                         .......+++++|.||++.|.++  ....   +.|.-+++.
T Consensus       263 ---i~~p~~~~t~~afg~d~~~lyVt--~~~~---g~i~~~~~~  298 (314)
T d1pjxa_         263 ---IRCPFEKPSNLHFKPQTKTIFVT--EHEN---NAVWKFEWQ  298 (314)
T ss_dssp             ---EECSSSCEEEEEECTTSSEEEEE--ETTT---TEEEEEECS
T ss_pred             ---EECCCCCEEEEEEeCCCCEEEEE--ECCC---CcEEEEECC
Confidence               00112367899999999877775  3333   457666664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.20  E-value=9.8e-05  Score=62.60  Aligned_cols=181  Identities=12%  Similarity=0.060  Sum_probs=105.2

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCcc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNAA  179 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~~  179 (427)
                      ....++++++|.++++...++.+++++-...   .............++++.+++ .++++... ..+..++..      
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~---~~~~~~~~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~------  127 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN---QTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAG------  127 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSC---CEECCCCSCCSEEEEEECTTC-CEEEEEGGGTEEEEECTT------
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccc---eeeeeeeeeeecccccccccc-eeEeeccccccccccccc------
Confidence            4568899999998777766666665432222   222222333567899999998 55554433 445555443      


Q ss_pred             ccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCc
Q 014302          180 SVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGT  259 (427)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~  259 (427)
                         ..              . ....                +           .........++++++|+.+++...++.
T Consensus       128 ---~~--------------~-~~~~----------------~-----------~~~~~~p~~i~~~~~g~~~v~~~~~~~  162 (260)
T d1rwia_         128 ---SK--------------T-QTVL----------------P-----------FTGLNDPDGVAVDNSGNVYVTDTDNNR  162 (260)
T ss_dssp             ---CS--------------S-CEEC----------------C-----------CCSCCSCCEEEECTTCCEEEEEGGGTE
T ss_pred             ---cc--------------e-eeee----------------e-----------ecccCCcceeeecCCCCEeeecccccc
Confidence               00              0 0000                0           001123457888999987777777888


Q ss_pred             EEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCceeEE
Q 014302          260 FYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKI  338 (427)
Q Consensus       260 v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  338 (427)
                      |..+|........+. ........+++.++|+.+++ ....+.+..+..........            ....-.....|
T Consensus       163 i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vs-d~~~~~i~~~~~~~~~~~~~------------~~~~~~~P~~i  229 (260)
T d1rwia_         163 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT-EHNTNQVVKLLAGSTTSTVL------------PFTGLNTPLAV  229 (260)
T ss_dssp             EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE-ETTTTEEEEECTTCSCCEEC------------CCCSCCCEEEE
T ss_pred             ccccccccceeeeeeccccCCCccceeeeeeeeeee-ecCCCEEEEEeCCCCeEEEE------------ccCCCCCeEEE
Confidence            999998765543333 44566789999999986654 44444555554332211110            00011256899


Q ss_pred             EECCCCCEEEE
Q 014302          339 AWDASGERLAV  349 (427)
Q Consensus       339 ~~sp~g~~La~  349 (427)
                      +++++|..+++
T Consensus       230 ~~d~~g~l~va  240 (260)
T d1rwia_         230 AVDSDRTVYVA  240 (260)
T ss_dssp             EECTTCCEEEE
T ss_pred             EEeCCCCEEEE
Confidence            99999986655

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.08  E-value=1.2e-05  Score=68.81  Aligned_cols=121  Identities=12%  Similarity=0.050  Sum_probs=73.7

Q ss_pred             EEccC--CCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc-----eeeeeeeCCCCCCcc
Q 014302          243 KWSPT--GDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL-----TLGSIHFASKPPSLD  315 (427)
Q Consensus       243 ~~sp~--g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~-----~i~~~~~~~~~~~~~  315 (427)
                      .+|||  |+.++-.+ ++.|+++|+.+++..++..+.+.+...+|||||+.|++....++     .+++++.....    
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~----   79 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE----   79 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE----
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc----
Confidence            46799  99988554 56799999998888777777788999999999999998765432     24444433321    


Q ss_pred             ccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          316 AHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                        ...+..................|+|||+.|+.+...........+...+....
T Consensus        80 --~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~  132 (281)
T d1k32a2          80 --IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGI  132 (281)
T ss_dssp             --EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGT
T ss_pred             --eEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCc
Confidence              01010000000111124577899999999988533322222233445555443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.04  E-value=0.002  Score=55.98  Aligned_cols=160  Identities=13%  Similarity=0.059  Sum_probs=85.5

Q ss_pred             CeEEEEEccCCCEEEEEecC----CcEEEEEcCCCCccccc---cCCCCeeEEEECCCCCEEEEEEcCC-----ceeeee
Q 014302          238 GLSILKWSPTGDYFFAAKFD----GTFYLWETNTWTSEPWS---STSGFVTGATWDPEGRMILLAFAGS-----LTLGSI  305 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~d----g~v~iwd~~~~~~~~~~---~~~~~v~~v~~spdg~~l~~~~~~~-----~~i~~~  305 (427)
                      ....+++++||+.+++...+    +.+...+..........   ........+++.++|++.++.....     +.++.+
T Consensus        83 ~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~  162 (319)
T d2dg1a1          83 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV  162 (319)
T ss_dssp             SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred             CeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEE
Confidence            45678899999877755332    23444444444432222   2234577899999998665432211     122222


Q ss_pred             eeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCc-eEEEeeeeeeeCC
Q 014302          306 HFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTP-LISLSLIGFIRGP  384 (427)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~-~~~~~~~~~~~~~  384 (427)
                      ......  +    .       .....-...+.++|+||++.|.++  ....   +.|..|++.... .............
T Consensus       163 ~~dg~~--~----~-------~~~~~~~~pnGia~s~dg~~lyva--d~~~---~~I~~~d~~~~g~~~~~~~~~~~~~~  224 (319)
T d2dg1a1         163 SPDFRT--V----T-------PIIQNISVANGIALSTDEKVLWVT--ETTA---NRLHRIALEDDGVTIQPFGATIPYYF  224 (319)
T ss_dssp             CTTSCC--E----E-------EEEEEESSEEEEEECTTSSEEEEE--EGGG---TEEEEEEECTTSSSEEEEEEEEEEEC
T ss_pred             ecccce--e----E-------EEeeccceeeeeeeccccceEEEe--cccC---CceEEEEEcCCCceeccccceeeecc
Confidence            111110  0    0       001111245789999999988775  3333   569999986432 2211111111111


Q ss_pred             CCCCCceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          385 GDNPKPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       385 ~~~~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .....|-.+++..+   |.+..+.|..|+|..|+
T Consensus       225 ~~~~~PdGl~vD~~---G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         225 TGHEGPDSCCIDSD---DNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             CSSSEEEEEEEBTT---CCEEEEEETTTEEEEEC
T ss_pred             CCccceeeeeEcCC---CCEEEEEcCCCEEEEEC
Confidence            11222446777654   77888888889988876

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.91  E-value=0.0015  Score=55.56  Aligned_cols=116  Identities=10%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             CCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc--cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCc
Q 014302          237 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS--STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSL  314 (427)
Q Consensus       237 ~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~  314 (427)
                      .....+++.++++.+++....+.|++||........+.  +.......+++.++|+.+++-..+...+.++   +....+
T Consensus       157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f---~~~G~~  233 (279)
T d1q7fa_         157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF---TQDGQL  233 (279)
T ss_dssp             SSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE---CTTSCE
T ss_pred             cccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEE---CCCCCE
Confidence            35667888888887778888889999986543222221  3445578899999999665433233233333   322222


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccC
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      .....        ..........|+++|||.++++   ..+    ..|++|+.+..
T Consensus       234 ~~~~~--------~~~~~~~p~~vav~~dG~l~V~---~~n----~~v~~fr~~~~  274 (279)
T d1q7fa_         234 ISALE--------SKVKHAQCFDVALMDDGSVVLA---SKD----YRLYIYRYVQL  274 (279)
T ss_dssp             EEEEE--------ESSCCSCEEEEEEETTTEEEEE---ETT----TEEEEEECSCC
T ss_pred             EEEEe--------CCCCCCCEeEEEEeCCCcEEEE---eCC----CeEEEEEeeee
Confidence            11110        0011125789999999975544   332    45999998654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.57  E-value=0.011  Score=50.37  Aligned_cols=158  Identities=12%  Similarity=0.040  Sum_probs=90.9

Q ss_pred             CeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc-----cCCCCeeEEEECCCCCEEEEEEcCC---ceeeeeeeCC
Q 014302          238 GLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS-----STSGFVTGATWDPEGRMILLAFAGS---LTLGSIHFAS  309 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~v~~spdg~~l~~~~~~~---~~i~~~~~~~  309 (427)
                      .+.++++.++|.++++ +. ..+.++|..+++...+.     .....+..+.+.|+|++.+......   +.-..+++.+
T Consensus        60 ~~~~i~~~~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~  137 (295)
T d2ghsa1          60 MGSALAKISDSKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK  137 (295)
T ss_dssp             CEEEEEEEETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET
T ss_pred             CcEEEEEecCCCEEEE-Ee-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC
Confidence            5667888888876665 33 46889999888764432     1233578899999999776543221   1112222222


Q ss_pred             CCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEE-EeeeeeeeCCCCCC
Q 014302          310 KPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLIS-LSLIGFIRGPGDNP  388 (427)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~  388 (427)
                      ..      ..       .....-...+.++|+++++.|.++  ++..   +.|..|++....... ....-++.......
T Consensus       138 g~------~~-------~~~~~~~~~Ng~~~s~d~~~l~~~--dt~~---~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g  199 (295)
T d2ghsa1         138 GK------VT-------KLFADISIPNSICFSPDGTTGYFV--DTKV---NRLMRVPLDARTGLPTGKAEVFIDSTGIKG  199 (295)
T ss_dssp             TE------EE-------EEEEEESSEEEEEECTTSCEEEEE--ETTT---CEEEEEEBCTTTCCBSSCCEEEEECTTSSS
T ss_pred             Cc------EE-------EEeeccCCcceeeecCCCceEEEe--eccc---ceeeEeeecccccccccceEEEeccCcccc
Confidence            10      00       001111245789999999988775  4443   568888874322111 11111223233333


Q ss_pred             CceeEEeccCCCCCceeEEEeeCceEEEEe
Q 014302          389 KPVAFSFHDKFKQGPLLSVCWSSGFCCTYP  418 (427)
Q Consensus       389 ~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~  418 (427)
                      .+-.+++..   +|.+....|..|+|..|+
T Consensus       200 ~pdG~~vD~---~GnlWva~~~~g~V~~~d  226 (295)
T d2ghsa1         200 GMDGSVCDA---EGHIWNARWGEGAVDRYD  226 (295)
T ss_dssp             EEEEEEECT---TSCEEEEEETTTEEEEEC
T ss_pred             cccceEEcC---CCCEEeeeeCCCceEEec
Confidence            355566644   477888888888888876

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.64  E-value=0.069  Score=46.25  Aligned_cols=103  Identities=10%  Similarity=0.084  Sum_probs=58.9

Q ss_pred             CeEEEEEccCCCEEEEEec---------------CCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCcee
Q 014302          238 GLSILKWSPTGDYFFAAKF---------------DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTL  302 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~~~~~---------------dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i  302 (427)
                      ....+.+..+|.++++-..               -+...+|.....+.......-.....++++||+++|+++......+
T Consensus       151 ~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i  230 (340)
T d1v04a_         151 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKI  230 (340)
T ss_dssp             SEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEE
T ss_pred             CccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeE
Confidence            3456666666666655210               1223444444444333334445688999999999999988887788


Q ss_pred             eeeeeCCCCCCccccccccccccceeeccCCceeEEEECC-CCCEEEEE
Q 014302          303 GSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDA-SGERLAVS  350 (427)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp-~g~~La~~  350 (427)
                      +.+.+.... .+..         .......+..-.+.+++ +|.+.+.+
T Consensus       231 ~~y~~~~~~-~l~~---------~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         231 HVYEKHANW-TLTP---------LRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEECTTS-CEEE---------EEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             EEEEeCCCc-ccce---------EEEecCCCCCCccEEecCCCEEEEEE
Confidence            888776431 1110         11112233566778875 55555553

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.63  E-value=0.091  Score=46.27  Aligned_cols=151  Identities=14%  Similarity=0.133  Sum_probs=83.3

Q ss_pred             EEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCc------------eeeeeeeCC---------CC-CCcccc
Q 014302          260 FYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL------------TLGSIHFAS---------KP-PSLDAH  317 (427)
Q Consensus       260 v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~------------~i~~~~~~~---------~~-~~~~~~  317 (427)
                      +.++|..+.+......-.+....+.++++|+++++++.+..            ..++.-+.-         .. ..+.+.
T Consensus       175 ~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV  254 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  254 (459)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence            56678777665433334456778999999999998764321            111111100         00 011111


Q ss_pred             cccccccc------ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE---EEeeeeeeeC-CCCC
Q 014302          318 LLPVDLPD------IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI---SLSLIGFIRG-PGDN  387 (427)
Q Consensus       318 ~~~~~~~~------~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~---~~~~~~~~~~-~~~~  387 (427)
                       ..++...      ...+..+.....+..+|||++++++  +.-+   .+|.|+|++.-...   .+.|...+-+ +...
T Consensus       255 -~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~Va--GKLs---~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg  328 (459)
T d1fwxa2         255 -KVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA--GKLS---PTVTVLDVTRFDAVFYENADPRSAVVAEPELG  328 (459)
T ss_dssp             -EEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEE--CTTS---SBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred             -eeecccccCCcceeEEEecCCCCCceEECCCCCEEEEe--CCcC---CcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence             1111111      1123344567889999999999997  5544   45999999642111   1122222222 2233


Q ss_pred             CCceeEEeccCCCCCceeEEEeeCceEEEEec
Q 014302          388 PKPVAFSFHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       388 ~~~~~~~f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ..|+..+|..+   |...+.-.-|.+|.-|.+
T Consensus       329 lgPLht~fd~~---g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         329 LGPLHTAFDGR---GNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             SCEEEEEECTT---SEEEEEETTTTEEEEEEH
T ss_pred             cCccccccCCC---ceEEEEeeccceEEEEec
Confidence            45788888764   556666667777777765

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.02  E-value=0.33  Score=40.39  Aligned_cols=240  Identities=12%  Similarity=0.170  Sum_probs=127.9

Q ss_pred             eeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCcccccc
Q 014302          104 GVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRS  183 (427)
Q Consensus       104 ~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~~~~  183 (427)
                      +.-.||..+.||.-+ ..+++|+|++..   .....+.....|.--.|-.+  ..|+.-.+..|.-|+++-+..      
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK---~klks~~~~e~VvfWkWis~--~~L~lVT~taVYHW~~~g~s~------  134 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMK---SKMKAHTMTDDVTFWKWISL--NTVALVTDNAVYHWSMEGESQ------  134 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTT---EEEEEEECSSCCCEEEESSS--SEEEEECSSEEEEEESSSSCC------
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHh---hhhceEEcCCCcEEEEecCC--CEEEEEcCCceEEEcccCCCC------
Confidence            445689999888765 568999999987   33333445567877778755  577777788899999861111      


Q ss_pred             CcccccccccCCCCcceeEeehhccc---CCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEE-E--Eec-
Q 014302          184 GAASFLGALSRGPGTRWTLVDFLRSQ---NGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFF-A--AKF-  256 (427)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~-~--~~~-  256 (427)
                                        +...++.+   ...+|-..                         ..+++.++++ +  +.. 
T Consensus       135 ------------------P~k~fdR~~~L~~~QIInY-------------------------~~d~~~kW~~l~GI~~~~  171 (327)
T d1utca2         135 ------------------PVKMFDRHSSLAGCQIINY-------------------------RTDAKQKWLLLTGISAQQ  171 (327)
T ss_dssp             ------------------CEEEEECCGGGTTCEEEEE-------------------------EECTTSCEEEEEEEEEET
T ss_pred             ------------------chhhhhhcccccCceEEEE-------------------------EECCCCCEEEEEeEecCC
Confidence                              11111111   12333333                         3444445444 1  111 


Q ss_pred             ---CCcEEEEEcCCCCccccccCCCCeeEEEECCC--C-CEEEEEEc--CCceeeeeeeCCCC---CCcccccccccccc
Q 014302          257 ---DGTFYLWETNTWTSEPWSSTSGFVTGATWDPE--G-RMILLAFA--GSLTLGSIHFASKP---PSLDAHLLPVDLPD  325 (427)
Q Consensus       257 ---dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spd--g-~~l~~~~~--~~~~i~~~~~~~~~---~~~~~~~~~~~~~~  325 (427)
                         .|.+.+|..+......+.+|.+.-..+...-+  - +.++++..  ..+.+.++.+....   ..+......+.++.
T Consensus       172 ~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fpp  251 (327)
T d1utca2         172 NRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP  251 (327)
T ss_dssp             TEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCT
T ss_pred             CceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCc
Confidence               25689999877766666666544333333211  1 23333332  22477777776632   12211111111110


Q ss_pred             ceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEEeccCCCCCcee
Q 014302          326 IVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFSFHDKFKQGPLL  405 (427)
Q Consensus       326 ~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~l  405 (427)
                      .   ...+-.-+|..|+.-..+.+..+.      |.|++||++++.++      |.+....+. ...-+.  ....+.++
T Consensus       252 e---a~~DFPvamqvs~kygiiyviTK~------G~i~lyDleTgt~i------~~nRIs~~~-iF~~a~--~~~~~Gi~  313 (327)
T d1utca2         252 E---AQNDFPVAMQISEKHDVVFLITKY------GYIHLYDLETGTCI------YMNRISGET-IFVTAP--HEATAGII  313 (327)
T ss_dssp             T---CTTCCEEEEEEETTTTEEEEEETT------SEEEEEETTTCCEE------EEEECCSSC-EEEEEE--ETTTTEEE
T ss_pred             c---ccCCcEEEEEeeccCCEEEEEecC------cEEEEEEcccccEE------EEeecCCCc-eEEecc--CCCCceEE
Confidence            0   011235677788766666664333      66999999999987      222222221 111122  22345677


Q ss_pred             EEEeeCceEEEE
Q 014302          406 SVCWSSGFCCTY  417 (427)
Q Consensus       406 ~v~~~~g~i~~~  417 (427)
                      +|. -.|++...
T Consensus       314 ~VN-r~GqVl~v  324 (327)
T d1utca2         314 GVN-RKGQVLSV  324 (327)
T ss_dssp             EEE-TTSEEEEE
T ss_pred             EEC-CCCeEEEE
Confidence            776 67776544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.46  E-value=0.53  Score=38.66  Aligned_cols=154  Identities=10%  Similarity=0.033  Sum_probs=94.3

Q ss_pred             CeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCc--eeeeeeeCCCCCC
Q 014302          238 GLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSL--TLGSIHFASKPPS  313 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~--~i~~~~~~~~~~~  313 (427)
                      .+..+++..-+..|+ +-...+.|.+.++......... ........++..|...+++.+..+..  .|....+......
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence            456788877677777 5556778999998766554333 33456889999998888876644332  3444444432110


Q ss_pred             ccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeE
Q 014302          314 LDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAF  393 (427)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (427)
                      .    .        ....-....++++++.++.|..+  +...   +.|...++.......+     +.+.   ..|..+
T Consensus       160 ~----i--------~~~~~~~P~glaiD~~~~~lYw~--d~~~---~~I~~~~~~g~~~~~v-----~~~~---~~P~~l  214 (263)
T d1npea_         160 I----L--------AQDNLGLPNGLTFDAFSSQLCWV--DAGT---HRAECLNPAQPGRRKV-----LEGL---QYPFAV  214 (263)
T ss_dssp             E----E--------ECTTCSCEEEEEEETTTTEEEEE--ETTT---TEEEEEETTEEEEEEE-----EECC---CSEEEE
T ss_pred             e----e--------eeecccccceEEEeecCcEEEEE--eCCC---CEEEEEECCCCCeEEE-----ECCC---CCcEEE
Confidence            0    0        00111256899999888888775  3333   5688888876544322     2221   136677


Q ss_pred             EeccCCCCCceeEEEeeCceEEEEecc
Q 014302          394 SFHDKFKQGPLLSVCWSSGFCCTYPLI  420 (427)
Q Consensus       394 ~f~~~~~~g~~l~v~~~~g~i~~~~~~  420 (427)
                      ++.    .+.+...-|.+++|..++..
T Consensus       215 av~----~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         215 TSY----GKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             EEE----TTEEEEEETTTTEEEEEETT
T ss_pred             EEE----CCEEEEEECCCCEEEEEECC
Confidence            775    25577777777888777654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.07  E-value=0.16  Score=45.50  Aligned_cols=57  Identities=16%  Similarity=0.225  Sum_probs=39.4

Q ss_pred             EEEEccCCCEEE-EEecCC----cEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEc
Q 014302          241 ILKWSPTGDYFF-AAKFDG----TFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFA  297 (427)
Q Consensus       241 ~~~~sp~g~~l~-~~~~dg----~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~  297 (427)
                      .+++|||+++++ +-+.+|    .|+++|+.+++.....-.......++|++|++.|++...
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~  190 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAY  190 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEEC
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEe
Confidence            356799999988 444455    499999999886332211112357899999999987653

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.78  E-value=0.85  Score=37.38  Aligned_cols=156  Identities=10%  Similarity=-0.026  Sum_probs=93.5

Q ss_pred             CeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCC-ceeeeeeeCCCCCCc
Q 014302          238 GLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGS-LTLGSIHFASKPPSL  314 (427)
Q Consensus       238 ~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~-~~i~~~~~~~~~~~~  314 (427)
                      .+..+++.+.++.|+ +-...+.|.+.++......... ........++..|...+|+.+.... ..|....+...... 
T Consensus        78 ~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~-  156 (266)
T d1ijqa1          78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-  156 (266)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-
T ss_pred             CcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee-
Confidence            455788887777777 4455678999998766543333 4456678899998777777654332 34555555433110 


Q ss_pred             cccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceEEEeeeeeeeCCCCCCCceeEE
Q 014302          315 DAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLISLSLIGFIRGPGDNPKPVAFS  394 (427)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (427)
                                 ......-...+.+++++.++.|..+  +...   +.|...++.......     .+........|..++
T Consensus       157 -----------~l~~~~~~~p~gl~iD~~~~~lYw~--d~~~---~~I~~~~~dG~~~~~-----~~~~~~~~~~p~~la  215 (266)
T d1ijqa1         157 -----------SLVTENIQWPNGITLDLLSGRLYWV--DSKL---HSISSIDVNGGNRKT-----ILEDEKRLAHPFSLA  215 (266)
T ss_dssp             -----------EEECSSCSCEEEEEEETTTTEEEEE--ETTT---TEEEEEETTSCSCEE-----EEECTTTTSSEEEEE
T ss_pred             -----------cccccccceeeEEEeeccccEEEEe--cCCc---CEEEEEECCCCCEEE-----EEeCCCcccccEEEE
Confidence                       0000111256899999999888875  4433   568888886544321     122222333466777


Q ss_pred             eccCCCCCceeEEEeeCceEEEEec
Q 014302          395 FHDKFKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       395 f~~~~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      ...    +.+...-|.++.|.-++.
T Consensus       216 v~~----~~ly~td~~~~~I~~~~~  236 (266)
T d1ijqa1         216 VFE----DKVFWTDIINEAIFSANR  236 (266)
T ss_dssp             EET----TEEEEEETTTTEEEEEET
T ss_pred             EEC----CEEEEEECCCCeEEEEEC
Confidence            653    456666667777766653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.50  E-value=0.5  Score=41.46  Aligned_cols=103  Identities=11%  Similarity=0.091  Sum_probs=56.1

Q ss_pred             EEEEEcCCCCc---cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCcee
Q 014302          260 FYLWETNTWTS---EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQGIE  336 (427)
Q Consensus       260 v~iwd~~~~~~---~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  336 (427)
                      +.+-|.+....   ..+.........+..+|||+++++++.-+.++.++++..-...+.....+.+.- ......+-...
T Consensus       254 V~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~-~~e~elglgPL  332 (459)
T d1fwxa2         254 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV-VAEPELGLGPL  332 (459)
T ss_dssp             EEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGE-EECCBCCSCEE
T ss_pred             ceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccE-EeecccCcCcc
Confidence            55666553221   112233344567899999999999988888888888764211111000100000 00111223556


Q ss_pred             EEEECCCCCEEEEEEecCCCcceeEEEEEEecc
Q 014302          337 KIAWDASGERLAVSYKGGDDIYKGLIAIYDARR  369 (427)
Q Consensus       337 ~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~  369 (427)
                      .-+|+..|.-..+.|-++      .|.-|++..
T Consensus       333 ht~fd~~g~aytslfids------~v~kw~~~~  359 (459)
T d1fwxa2         333 HTAFDGRGNAYTSLFLDS------QVVKWNIED  359 (459)
T ss_dssp             EEEECTTSEEEEEETTTT------EEEEEEHHH
T ss_pred             ccccCCCceEEEEeeccc------eEEEEecch
Confidence            778999885544443343      499999853

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.88  E-value=1.9  Score=37.91  Aligned_cols=59  Identities=8%  Similarity=0.152  Sum_probs=37.9

Q ss_pred             ceeeeEEcCCCCEEEEEe-----CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEe
Q 014302          101 DLQGVSWHQHKHIVAFIS-----GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVG  162 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~-----~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g  162 (427)
                      .+..+++||++++||.+-     .-.++++.|+.++  +...... .......++|++|+..++.+.
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg--~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA--KELPDVL-ERVKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT--EEEEEEE-EEECSCCEEECTTSSEEEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcc--eeccccc-ccccccceEEcCCCCEEEEEE
Confidence            455778999999988652     2247889999887  2221111 111235689999996666654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.14  E-value=2.3  Score=36.39  Aligned_cols=70  Identities=9%  Similarity=-0.012  Sum_probs=44.8

Q ss_pred             eeeEEcCCCCEEEEEeCC-----C------eEEEEEccCCCCccee-eccCCcCCeeEEEEccCCCceEEEecC--CeEE
Q 014302          103 QGVSWHQHKHIVAFISGS-----T------QVIVRDYEDSGKDACI-LTSDSQRDVKVLEWRPNGGRSLSVGCK--GGIC  168 (427)
Q Consensus       103 ~~l~~sp~g~~lat~~~d-----~------~v~vwd~~~~~~~~~~-~~~~~~~~v~~l~~sp~~~~~la~g~~--~~i~  168 (427)
                      .......+|+.++.|+.+     +      .+.+||..+....... ....+.......++.+++ .+++.|..  +.+.
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGNDAKKTS  101 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSSSTTCEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-cEEEeecCCCccee
Confidence            344456688888888742     1      3678998887443322 223343344567888999 67777644  6788


Q ss_pred             EEecc
Q 014302          169 IWAPS  173 (427)
Q Consensus       169 iw~~~  173 (427)
                      +||..
T Consensus       102 ~yd~~  106 (387)
T d1k3ia3         102 LYDSS  106 (387)
T ss_dssp             EEEGG
T ss_pred             EecCc
Confidence            99886

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.84  E-value=0.93  Score=39.04  Aligned_cols=122  Identities=13%  Similarity=0.155  Sum_probs=70.7

Q ss_pred             EEEEEccCCCEEEEEecCC-----------cEEEEEcCCCCccccc----cCCCCeeEEEECCCCCEEEEEEcCCceeee
Q 014302          240 SILKWSPTGDYFFAAKFDG-----------TFYLWETNTWTSEPWS----STSGFVTGATWDPEGRMILLAFAGSLTLGS  304 (427)
Q Consensus       240 ~~~~~sp~g~~l~~~~~dg-----------~v~iwd~~~~~~~~~~----~~~~~v~~v~~spdg~~l~~~~~~~~~i~~  304 (427)
                      .......+|+.++.|+.+.           .+.+||..+++-....    .+.......++.++|+.++.++.+...+.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3444556788777776421           2779999877643221    333445567889999999877655556666


Q ss_pred             eeeCCCCCCccccccccccccceeeccCCceeEEEECCCCCEEEEEEecCCCc---ceeEEEEEEeccCceEEE
Q 014302          305 IHFASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKGGDDI---YKGLIAIYDARRTPLISL  375 (427)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~---~~g~i~vwd~~~~~~~~~  375 (427)
                      ++.....-.    ..       ..+.....-..++..+||+.+++   ++...   ....+.+||..+.....+
T Consensus       103 yd~~~~~w~----~~-------~~~~~~r~~~~~~~~~dG~v~v~---GG~~~~~~~~~~v~~yd~~~~~W~~~  162 (387)
T d1k3ia3         103 YDSSSDSWI----PG-------PDMQVARGYQSSATMSDGRVFTI---GGSWSGGVFEKNGEVYSPSSKTWTSL  162 (387)
T ss_dssp             EEGGGTEEE----EC-------CCCSSCCSSCEEEECTTSCEEEE---CCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             ecCccCccc----cc-------ccccccccccceeeecCCceeee---ccccccccccceeeeecCCCCceeec
Confidence            554442100    00       00001112245677789998888   43211   123589999988776543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.99  E-value=4.8  Score=35.50  Aligned_cols=54  Identities=11%  Similarity=0.239  Sum_probs=36.1

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeec------cCCcCCeeEEEEccC
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILT------SDSQRDVKVLEWRPN  154 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~------~~~~~~v~~l~~sp~  154 (427)
                      .-++|+|.|||++|++--..|.|++++...+........      ..-+.....|+++|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            457999999999887765579998876555522111111      122456789999996

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=90.19  E-value=4.8  Score=34.16  Aligned_cols=122  Identities=19%  Similarity=0.154  Sum_probs=66.6

Q ss_pred             CeEEEEE--ccC-CC-EEEEEecCCcEEEEEcCCCC---c----cccccCCCCeeEEEECCCCCEEEEEEcCCceeeeee
Q 014302          238 GLSILKW--SPT-GD-YFFAAKFDGTFYLWETNTWT---S----EPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIH  306 (427)
Q Consensus       238 ~v~~~~~--sp~-g~-~l~~~~~dg~v~iwd~~~~~---~----~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~  306 (427)
                      .++.+|+  ++. |. ++++...+|.+..|.+....   .    .........+..+.+......|+++-.+. -++.+.
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~-Giw~~~  207 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDE-AIWKFS  207 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT-EEEEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCcc-ceEEEE
Confidence            3555554  554 44 34477788999988774322   1    11124556788999999989998875443 444444


Q ss_pred             eCCCCCCccccccccccccceeeccCCceeEEEEC--CCCC-EEEEEEecCCCcceeEEEEEEeccC
Q 014302          307 FASKPPSLDAHLLPVDLPDIVSLTGSQGIEKIAWD--ASGE-RLAVSYKGGDDIYKGLIAIYDARRT  370 (427)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~s--p~g~-~La~~~~~~~d~~~g~i~vwd~~~~  370 (427)
                      ........ ....  ..  ...-...+.+..|+.=  .+++ ||++++.|.     .+..|||.+..
T Consensus       208 a~~~~~~~-~~~i--~~--~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~-----n~f~vydr~~~  264 (353)
T d1h6la_         208 AEPDGGSN-GTVI--DR--ADGRHLTPDIEGLTIYYAADGKGYLLASSQGN-----SSYAIYERQGQ  264 (353)
T ss_dssp             SSTTSCSC-CEEE--EE--CSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG-----TEEEEEESSTT
T ss_pred             eccCCCcc-ceee--ec--ccCccccCCccccEEEEcCCCCeEEEEEcCCC-----CeEEEEecCCC
Confidence            33211100 0000  00  0000112356666643  3444 777766554     45999999764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.08  E-value=1.6  Score=38.79  Aligned_cols=53  Identities=11%  Similarity=0.269  Sum_probs=38.7

Q ss_pred             cCCeEEEEEccCCCEEEEEecCCcEEEEEcCCCCccccc---------cCCCCeeEEEECCC
Q 014302          236 FGGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWS---------STSGFVTGATWDPE  288 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~---------~~~~~v~~v~~spd  288 (427)
                      -..-++|+|.|||+.|++--..|.|++++..+++.....         ........++++|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            346779999999988877655799999987776542211         23456789999985

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.63  E-value=4.3  Score=32.80  Aligned_cols=200  Identities=11%  Similarity=0.088  Sum_probs=112.6

Q ss_pred             ceeeeEEcCCCCEEEEEe-CCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCCCc
Q 014302          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPGNA  178 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~~~  178 (427)
                      .+.+|+|++.+++|.... .++.|+..+++..  ....+.......+.++++..-+..+..+-.. +.|.+.+++     
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~--~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d-----  109 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGG--EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-----  109 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSC--CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-----
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccC--CcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC-----
Confidence            467899999888777654 4578888777655  2333333333467888887666455555433 777777775     


Q ss_pred             cccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEec-C
Q 014302          179 ASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKF-D  257 (427)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d  257 (427)
                                        +.....   +                         +.........+++.|...+|+.... .
T Consensus       110 ------------------g~~~~~---l-------------------------~~~~l~~p~~l~vdp~~g~ly~t~~~~  143 (263)
T d1npea_         110 ------------------GTQRRV---L-------------------------FDTGLVNPRGIVTDPVRGNLYWTDWNR  143 (263)
T ss_dssp             ------------------SCSCEE---E-------------------------ECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred             ------------------CceEEE---E-------------------------ecccccCCcEEEEecccCcEEEeecCC
Confidence                              000000   0                         0001124567788887777773332 2


Q ss_pred             Cc--EEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccccccccceeeccCCc
Q 014302          258 GT--FYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLPVDLPDIVSLTGSQG  334 (427)
Q Consensus       258 g~--v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (427)
                      +.  |.--++.......+. ..-.....+++.+.++.|+.+....+.|...++.....    +.         ....-..
T Consensus       144 ~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~----~~---------v~~~~~~  210 (263)
T d1npea_         144 DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR----RK---------VLEGLQY  210 (263)
T ss_dssp             SSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE----EE---------EEECCCS
T ss_pred             CCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe----EE---------EECCCCC
Confidence            23  433445443333332 23345678999988888888766666777766654310    00         0111113


Q ss_pred             eeEEEECCCCCEEEEEEecCCCcceeEEEEEEeccCceE
Q 014302          335 IEKIAWDASGERLAVSYKGGDDIYKGLIAIYDARRTPLI  373 (427)
Q Consensus       335 i~~v~~sp~g~~La~~~~~~~d~~~g~i~vwd~~~~~~~  373 (427)
                      ..+|++.  +.+|..+  +...   +.|...|..+++..
T Consensus       211 P~~lav~--~~~lYwt--d~~~---~~I~~~~~~~g~~~  242 (263)
T d1npea_         211 PFAVTSY--GKNLYYT--DWKT---NSVIAMDLAISKEM  242 (263)
T ss_dssp             EEEEEEE--TTEEEEE--ETTT---TEEEEEETTTTEEE
T ss_pred             cEEEEEE--CCEEEEE--ECCC---CEEEEEECCCCccc
Confidence            4567664  5566664  3333   45777787776654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.03  E-value=5.6  Score=32.09  Aligned_cols=159  Identities=8%  Similarity=0.006  Sum_probs=90.8

Q ss_pred             ceeeeEEcCCCCEEEEEe-CCCeEEEEEccCCC--CcceeeccCCcCCeeEEEEccCCCceEEEecC-CeEEEEeccCCC
Q 014302          101 DLQGVSWHQHKHIVAFIS-GSTQVIVRDYEDSG--KDACILTSDSQRDVKVLEWRPNGGRSLSVGCK-GGICIWAPSYPG  176 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~-~d~~v~vwd~~~~~--~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~-~~i~iw~~~~~~  176 (427)
                      .+.+++|++.++.|.... .++.|+--+++...  .............+.++++.+.+..+..+-.. +.|.+.+++   
T Consensus        31 ~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~---  107 (266)
T d1ijqa1          31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK---  107 (266)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT---
T ss_pred             ceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecC---
Confidence            567899999888777664 45667665554421  11222222333456678887766555555433 778888776   


Q ss_pred             CccccccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEe-
Q 014302          177 NAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAK-  255 (427)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-  255 (427)
                                          +....  .                          .+.........++++|...+|+... 
T Consensus       108 --------------------g~~~~--~--------------------------~~~~~~~~P~~l~vd~~~g~ly~~~~  139 (266)
T d1ijqa1         108 --------------------GVKRK--T--------------------------LFRENGSKPRAIVVDPVHGFMYWTDW  139 (266)
T ss_dssp             --------------------SSSEE--E--------------------------EEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred             --------------------CceEE--E--------------------------EEcCCCCCcceEEEEcccCeEEEecc
Confidence                                10000  0                          0111122355677777666666433 


Q ss_pred             -cCCcEEEEEcCCCCccccc-cCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCC
Q 014302          256 -FDGTFYLWETNTWTSEPWS-STSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASK  310 (427)
Q Consensus       256 -~dg~v~iwd~~~~~~~~~~-~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~  310 (427)
                       ..+.|.-.++.......+. ..-.....+++.+.++.|+.+......|...++...
T Consensus       140 ~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         140 GTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             SSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence             2345655666544443333 333567899999999988887776677877777553

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.58  E-value=7.3  Score=32.94  Aligned_cols=127  Identities=13%  Similarity=0.094  Sum_probs=67.8

Q ss_pred             CCeeEEEE--CC-CCCEEEEEEcCCceeeeeeeCCCC-CCccccccccccccceeeccCCceeEEEECCCCCEEEEEEec
Q 014302          278 GFVTGATW--DP-EGRMILLAFAGSLTLGSIHFASKP-PSLDAHLLPVDLPDIVSLTGSQGIEKIAWDASGERLAVSYKG  353 (427)
Q Consensus       278 ~~v~~v~~--sp-dg~~l~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~v~~sp~g~~La~~~~~  353 (427)
                      ..+..+|+  ++ +|...++.....+.+.+|.+.... ..+..       .....+.....+..|+++.....|.+   +
T Consensus       128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~-------~lvr~f~~~~q~EGCVvDde~~~Lyi---s  197 (353)
T d1h6la_         128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISG-------KKVRAFKMNSQTEGMAADDEYGSLYI---A  197 (353)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEE-------EEEEEEECSSCEEEEEEETTTTEEEE---E
T ss_pred             CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceee-------EeeeccCCCCccceEEEeCCCCcEEE---e
Confidence            35677887  65 466667777777888888876532 11111       11223344557899999998888877   4


Q ss_pred             CCCcceeEEEEEEeccC--ceEEEeeeeeeeCCCCCCCceeEEeccC-CCCCceeEEEeeCceEEEEec
Q 014302          354 GDDIYKGLIAIYDARRT--PLISLSLIGFIRGPGDNPKPVAFSFHDK-FKQGPLLSVCWSSGFCCTYPL  419 (427)
Q Consensus       354 ~~d~~~g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~g~~l~v~~~~g~i~~~~~  419 (427)
                      -++     +.+|.+...  ............+......+--++.... ...|.|++..=.+.+..+|+-
T Consensus       198 EE~-----~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr  261 (353)
T d1h6la_         198 EED-----EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER  261 (353)
T ss_dssp             ETT-----TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             cCc-----cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence            444     445654321  0000000011111111112224443332 235667776666778888874

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.05  E-value=8.3  Score=32.99  Aligned_cols=141  Identities=11%  Similarity=-0.036  Sum_probs=81.6

Q ss_pred             ceeeeEEcCCCCEEEEEeCCCeEEEEEccCCCCcceeeccCCcCCeeEEEEccCCCceEEEecCCeEEEEeccCCCCccc
Q 014302          101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSGKDACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS  180 (427)
Q Consensus       101 ~V~~l~~sp~g~~lat~~~d~~v~vwd~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~~la~g~~~~i~iw~~~~~~~~~~  180 (427)
                      .|..++|+-+  .|+.. .++.+..++.....  ...........+.++.++|..  +++...++.+.++.+..      
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~--~~~~~~~~~~~~~~~~~~p~~--~~l~~~~~~~~~~~l~~------  154 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELS--EFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRT------  154 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTT--CEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTT------
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccc--cccccccccccccceecCCce--eEEEecCCCEEEEEecc------
Confidence            5888899744  45555 34566676665541  222222334578889998864  66666778888888861      


Q ss_pred             cccCcccccccccCCCCcceeEeehhcccCCCceeeeEeCCCCCCcccCceEEeccCCeEEEEEccCCCEEEEEecCCcE
Q 014302          181 VRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQITALSWGPDGRFPGLGTPIRRGFGGLSILKWSPTGDYFFAAKFDGTF  260 (427)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~dg~v  260 (427)
                         +              ....       ....+.++.|+                +.+.+++|++.|+.++++..+ ..
T Consensus       155 ---~--------------~~~~-------~~~~v~~~~~~----------------~~~~~v~ws~kgkq~v~~~g~-~~  193 (381)
T d1xipa_         155 ---K--------------STKQ-------LAQNVTSFDVT----------------NSQLAVLLKDRSFQSFAWRNG-EM  193 (381)
T ss_dssp             ---C--------------CEEE-------EEESEEEEEEC----------------SSEEEEEETTSCEEEEEEETT-EE
T ss_pred             ---C--------------cccc-------ccCCcceEEec----------------CCceEEEEeCCcEEEEEeCCC-ce
Confidence               0              0000       01234455553                367889999999988887422 22


Q ss_pred             EEE-EcCCCCc-cccccCCCCeeEEEECCCCCEEEEE
Q 014302          261 YLW-ETNTWTS-EPWSSTSGFVTGATWDPEGRMILLA  295 (427)
Q Consensus       261 ~iw-d~~~~~~-~~~~~~~~~v~~v~~spdg~~l~~~  295 (427)
                      .+- ++..... .........+.++.|-.+..++++-
T Consensus       194 q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         194 EKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            221 2221111 1111345578999999877766543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.59  E-value=13  Score=31.00  Aligned_cols=58  Identities=21%  Similarity=0.296  Sum_probs=38.7

Q ss_pred             cCCeEEEEEccCCCEEE-EEecCCcEEEEEcCCCCccc---cccCCCCeeEEEECC-CCCEEE
Q 014302          236 FGGLSILKWSPTGDYFF-AAKFDGTFYLWETNTWTSEP---WSSTSGFVTGATWDP-EGRMIL  293 (427)
Q Consensus       236 ~~~v~~~~~sp~g~~l~-~~~~dg~v~iwd~~~~~~~~---~~~~~~~v~~v~~sp-dg~~l~  293 (427)
                      ......++++||+++|+ +.+..+.|++|++.......   .....+..-.+.+.+ +|.+.+
T Consensus       205 l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwv  267 (340)
T d1v04a_         205 FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV  267 (340)
T ss_dssp             ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred             CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEE
Confidence            34567889999999888 55678889999987554321   123445566777765 445444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.14  E-value=14  Score=30.30  Aligned_cols=119  Identities=15%  Similarity=0.113  Sum_probs=75.4

Q ss_pred             EEEEccCCCEEEEEecCCcEEEEEcCCCCccccccCCCCeeEEEECCCCCEEEEEEcCCceeeeeeeCCCCCCccccccc
Q 014302          241 ILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLAFAGSLTLGSIHFASKPPSLDAHLLP  320 (427)
Q Consensus       241 ~~~~sp~g~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~v~~v~~spdg~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~  320 (427)
                      +.--+|..+.||.-+ ...+.++|+++.++.........|.--.|-.+ +.|+..+  +..++-|++....       .|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~-~~L~lVT--~taVYHW~~~g~s-------~P  135 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL-NTVALVT--DNAVYHWSMEGES-------QP  135 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSS-SEEEEEC--SSEEEEEESSSSC-------CC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCC-CEEEEEc--CCceEEEcccCCC-------Cc
Confidence            444678888888544 66899999999887666556667878888765 4454443  2368888885421       11


Q ss_pred             cccccc-eeeccCCceeEEEECCCCCEEEEEEecCCCc-ceeEEEEEEeccCc
Q 014302          321 VDLPDI-VSLTGSQGIEKIAWDASGERLAVSYKGGDDI-YKGLIAIYDARRTP  371 (427)
Q Consensus       321 ~~~~~~-~~~~~~~~i~~v~~sp~g~~La~~~~~~~d~-~~g~i~vwd~~~~~  371 (427)
                      ..+-+. ..+ .+..|-.-..+++.+|++.+.-...++ -.|.+.+|..+.+.
T Consensus       136 ~k~fdR~~~L-~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~  187 (327)
T d1utca2         136 VKMFDRHSSL-AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV  187 (327)
T ss_dssp             EEEEECCGGG-TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred             hhhhhhcccc-cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc
Confidence            111111 111 233678888899999998753222222 25889999987654