Citrus Sinensis ID: 014319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
Protein Sequence
MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGANQPKGDRG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccccEEEEEEccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccEEEcccccccccccccccHcccccccccccccccccc
Coil and Loop (DISEMBL)
mgcflstskdtggnrrrpgnigevsvyvpglripkpvdfsqslgdNLSKNMVERLSALRTRIVVMAaqegptitrtrrksatqhggstLADLHQALEDYLPVLLGLVkdgsqlqyKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLllprtsadgyqpkvseesrRASVDIFLKAAGyldcavrhvlpqmspelrrelpvdlaEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNImnlplangwgekhKLFVKWKYFEAKAAAYYYHGLildegnteKFHGMAVAALQAADEYFKESKKACEafnvapplsrnpplwgtMKYLsekipkdtsskvrinrdLYSYEKImetaptlpdfalalkpdefqlppvhpswtdenmnrgqaganqpkgdrg
Flexible Loop (DISEMBL)
mgcflstskdtggnrrrpgnigeVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVmaaqegptitrtrrksatqhgGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADgyqpkvseesrrASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAfnvapplsrnpplWGTMKYLsekipkdtsskvriNRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVhpswtdenmnrgqaganqpkgdrg
Low Complexity Region (SEG)
MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHlmamlslsqanllllPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVkwkyfeakaaayyyHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGANQPKGDRG
Disordered region (IsUnstruct)
*********************GEVSVYVPGLRIPKPVDF***********MVERLSALRTRIVVMAA*********************LADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWV***********SNAWYEVLSVLHLMAMLSLSQANLLLLPR*****************SVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSE*********VRINRDLYSYEKIMETAPTLPDFALALK*********************************
Disordered Region (DISOPRED)
***********************VSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQE*****************STLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLL*****************RRASVDIFLKAAGYLDCAVRHVL**************LAEGDLRALCLQALGQGVDIQLGMA********AVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKE*K*************RNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMN**************
Disordered Region (DISEMBL)
**************RRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTIT************STLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSAD***********RASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRG************
Disordered Region (DISPRO)
******************GNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITR*RRK****HGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWT*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGANQPKGDRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	427	2.2.26 [Sep-21-2011]
Q4V8K5	411	BRO1 domain-containing pr	yes	no	0.711	0.739	0.227	6e-06
Q5RDD7	411	BRO1 domain-containing pr	yes	no	0.707	0.734	0.216	9e-06
Q8K2Q7	411	BRO1 domain-containing pr	yes	no	0.711	0.739	0.224	9e-06
Q5VW32	411	BRO1 domain-containing pr	yes	no	0.707	0.734	0.216	3e-05

>sp|Q4V8K5|BROX_RAT BRO1 domain-containing protein BROX OS=Rattus norvegicus GN=Brox PE=2 SV=1

 Score = 52.4 bits (124), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 139/329 (42%), Gaps = 25/329 (7%)

Query: 90  ADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAM 149
           ADL+ +L       +G     S+L+Y   F W +       +A  +A +E++S+   +A+
Sbjct: 61  ADLYFSLLQGFINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVAL 120

Query: 150 LSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP-ELRR 208
                A+ L        G +    +E++     + + A  +      H+   ++P E  R
Sbjct: 121 WYTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGR 173

Query: 209 ELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIM 268
           +L   L   D   +  QA  Q V I   + +      +A    LA E   ++Q+A   + 
Sbjct: 174 DLEARLI--DAYIIQCQAEAQEVTIARAIELKHAPGLIAA---LAYETASFYQKADHTLS 228

Query: 269 NLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKE 328
           +L  A+    +  L +K  ++   A AY YHG  L   +     G A+ +LQ A++ + E
Sbjct: 229 SLEPAHSAKWRKYLHLKMCFY--TAYAYCYHGQTLLASDK---CGEAIRSLQEAEKLYAE 283

Query: 329 SKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL 386
           ++  C+ +     P  +  P      + L   + K+T  K +       ++KI   AP L
Sbjct: 284 AEALCKEYGETKGPGPTAKPSGHLFFRKLGSLV-KNTLDKCQRENGFIYFQKIPTEAPQL 342

Query: 387 ---PDFALALKPDEFQLPPVHPSWTDENM 412
               ++ L ++P  F+ PP+   WT E +
Sbjct: 343 ELKANYGL-VEPVPFEFPPMSALWTPEAL 370

Rattus norvegicus (taxid: 10116)

>sp|Q5RDD7|BROX_PONAB BRO1 domain-containing protein BROX OS=Pongo abelii GN=BROX PE=2 SV=1

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 31/333 (9%)

Query: 92  LHQALEDYLPVLLGLVKD------GSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLH 145
           +  A + Y  +L G +         S+L+Y   F W +       +A  +A +E++S+  
Sbjct: 57  MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGF 116

Query: 146 LMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP- 204
            +A+     A+ L        G +    +E++     + + A  +      H+   ++P 
Sbjct: 117 NVALWHTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLITPA 169

Query: 205 ELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQ 264
           E  R+L   L E    A  +Q   +  ++ +  AI+  K    +   LA E   ++Q+A 
Sbjct: 170 EKGRDLESRLIE----AYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFYQKAD 224

Query: 265 DNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADE 324
             + +L  A     +  L +K  ++   A AY YHG  L   +     G A+ +LQ A++
Sbjct: 225 HTLSSLEPAYSAKWRKYLHLKMCFY--TAYAYCYHGETLLASDK---CGEAIRSLQEAEK 279

Query: 325 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 382
            + +++  C+ +     P  +  P      + L   + K+T  K +       ++KI   
Sbjct: 280 LYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTE 338

Query: 383 APTL---PDFALALKPDEFQLPPVHPSWTDENM 412
           AP L    ++ L ++P  F+ PP    WT E +
Sbjct: 339 APQLELKANYGL-VEPIPFEFPPTSAQWTPETL 370

Pongo abelii (taxid: 9601)

>sp|Q8K2Q7|BROX_MOUSE BRO1 domain-containing protein BROX OS=Mus musculus GN=Brox PE=2 SV=1

 Score = 52.0 bits (123), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 139/329 (42%), Gaps = 25/329 (7%)

Query: 90  ADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAM 149
           ADL+ +L       +G     S+L+Y   F W +       +A  +A +E++S+   +A+
Sbjct: 61  ADLYFSLLQGFINSVGDSTQESKLRYIQNFKWTDTLQGHVPSAQQDAVFELISMGFNVAL 120

Query: 150 LSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP-ELRR 208
                A+ L        G +    +E++     + + A  +      H+   ++P E  R
Sbjct: 121 WYTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHIPKLLTPAEKGR 173

Query: 209 ELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIM 268
           +L   L   D   +  QA  Q V I   + +      +A    LA +   ++Q+A   + 
Sbjct: 174 DLEARLI--DAYIIQCQAEAQEVTIARAIELKHAPGLIAA---LAYDTASFYQKADHTLS 228

Query: 269 NLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKE 328
           +L  A+    +  L +K  ++   A AY YHG  L   +     G A+ +LQ A++ + E
Sbjct: 229 SLEPAHSAKWRKYLHLKMCFY--TAYAYCYHGQTLLASDK---CGEAIRSLQEAEKLYAE 283

Query: 329 SKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL 386
           ++  C+ +     P  +  P      + L   + K+T  K +       ++KI   AP L
Sbjct: 284 AEALCKEYGETKGPGPTAKPSGHLFFRKLGSLV-KNTLDKCQRENGFIYFQKIPTEAPQL 342

Query: 387 ---PDFALALKPDEFQLPPVHPSWTDENM 412
               ++ L ++P  F+ PP+   WT E +
Sbjct: 343 ELKANYGL-VEPVPFEFPPMSAHWTPEAL 370

Mus musculus (taxid: 10090)

>sp|Q5VW32|BROX_HUMAN BRO1 domain-containing protein BROX OS=Homo sapiens GN=BROX PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 139/333 (41%), Gaps = 31/333 (9%)

Query: 92  LHQALEDYLPVLLGLVKD------GSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLH 145
           +  A + Y  +L G +         S+L+Y   F W +       +A  +A +E++S+  
Sbjct: 57  MKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGF 116

Query: 146 LMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSP- 204
            +A+     A+ L        G +    +E++     + + A  +      H+   ++P 
Sbjct: 117 NVALWYTKYASRLA-------GKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPA 169

Query: 205 ELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQ 264
           E  R+L   L E    A  +Q   +  ++ +  AI+  K    +   LA E   ++Q+A 
Sbjct: 170 EKGRDLESRLIE----AYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFYQKAD 224

Query: 265 DNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADE 324
             + +L  A     +  L +K  ++   A AY YHG  L   +     G A+ +LQ A++
Sbjct: 225 HTLSSLEPAYSAKWRKYLHLKMCFY--TAYAYCYHGETLLASDK---CGEAIRSLQEAEK 279

Query: 325 YFKESKKACEAF--NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET 382
            + +++  C+ +     P  +  P      + L   + K+T  K +       ++KI   
Sbjct: 280 LYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLV-KNTLEKCQRENGFIYFQKIPTE 338

Query: 383 APTL---PDFALALKPDEFQLPPVHPSWTDENM 412
           AP L    ++ L ++P  F+ PP    WT E +
Sbjct: 339 APQLELKANYGL-VEPIPFEFPPTSVQWTPETL 370

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
359489921	426	PREDICTED: uncharacterized protein LOC10	0.995	0.997	0.877	0.0
224076890	425	predicted protein [Populus trichocarpa]	0.995	1.0	0.856	0.0
356576604	425	PREDICTED: uncharacterized protein LOC10	0.983	0.988	0.892	0.0
356535288	425	PREDICTED: uncharacterized protein LOC10	0.983	0.988	0.883	0.0
356559999	425	PREDICTED: uncharacterized protein LOC10	0.992	0.997	0.850	0.0
297842093	424	hypothetical protein ARALYDRAFT_895200 [	0.990	0.997	0.830	0.0
255557094	420	conserved hypothetical protein [Ricinus	0.981	0.997	0.847	0.0
356531017	425	PREDICTED: uncharacterized protein LOC10	0.992	0.997	0.847	0.0
15219459	419	Endosomal targeting BRO1-like domain-con	0.960	0.978	0.832	0.0
449439525	402	PREDICTED: uncharacterized protein LOC10	0.934	0.992	0.827	0.0

>gi|359489921|ref|XP_002264045.2| PREDICTED: uncharacterized protein LOC100266486 [Vitis vinifera] gi|297737210|emb|CBI26411.3| unnamed protein product [Vitis vinifera]

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/426 (87%), Positives = 401/426 (94%), Gaps = 1/426 (0%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGCF+ST  DTGGNRRRPGNIGEVSV++PG RIPKP+DFS+SLGD+LSKN++ERL+ALRT
Sbjct: 1   MGCFVSTPTDTGGNRRRPGNIGEVSVFIPGFRIPKPLDFSKSLGDHLSKNLLERLTALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA  E PTITRTRRK+ATQHGGSTLADL QALEDYLPVLLGLVKDGSQLQ+KVQFV
Sbjct: 61  RIVVMAGHEAPTITRTRRKTATQHGGSTLADLLQALEDYLPVLLGLVKDGSQLQHKVQFV 120

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           WVNQED+AEET +SNAWYEVLSVLHLMAML LSQANLLLLPRTS+DGYQPKVSEESRRAS
Sbjct: 121 WVNQEDDAEETTMSNAWYEVLSVLHLMAMLLLSQANLLLLPRTSSDGYQPKVSEESRRAS 180

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIFLKAAGYLDCAV+HVLPQ+S ELRR LPVDLAEG LRALCLQALGQGVDIQLGMAID
Sbjct: 181 IDIFLKAAGYLDCAVKHVLPQLSSELRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAID 240

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHG 300
           STKATLAVKRRLACEMVKYWQQAQDNIMNLPL NGWGEKHKLFVKWKY EAKA AYYYHG
Sbjct: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLTNGWGEKHKLFVKWKYVEAKATAYYYHG 300

Query: 301 LILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIP 360
           LILDEGNTEK HGMAVAALQAADEY KESK+ACEAFN+APPLSRNPPLWGTMKYLSEKIP
Sbjct: 301 LILDEGNTEKSHGMAVAALQAADEYLKESKRACEAFNMAPPLSRNPPLWGTMKYLSEKIP 360

Query: 361 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGAN 420
           KDTSSKVRINRDLYS+++IMETAP LPDFALALKPD++QLPPV PSW D N+N+GQ+  N
Sbjct: 361 KDTSSKVRINRDLYSHQRIMETAPQLPDFALALKPDDYQLPPVDPSWND-NINKGQSATN 419

Query: 421 QPKGDR 426
           Q K DR
Sbjct: 420 QLKTDR 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076890|ref|XP_002305035.1| predicted protein [Populus trichocarpa] gi|118488314|gb|ABK95976.1| unknown [Populus trichocarpa] gi|222847999|gb|EEE85546.1| predicted protein [Populus trichocarpa]

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/425 (85%), Positives = 393/425 (92%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGC +ST +D+GGNRRRPG+IG+VSVYVPG RIPKPVDFS SLGD+L KN+V+ LSALRT
Sbjct: 1   MGCLVSTPQDSGGNRRRPGSIGDVSVYVPGFRIPKPVDFSLSLGDHLPKNLVKSLSALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QE PT++RTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQ+ VQFV
Sbjct: 61  RIVVMAGQEAPTVSRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQHNVQFV 120

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           W+NQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTS+DGYQPKVSEESRRAS
Sbjct: 121 WMNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSSDGYQPKVSEESRRAS 180

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIFLKAAGYLDCAV++VLPQ+   LR+ELPVDLAEG LRALCLQALGQ VDIQLGMAID
Sbjct: 181 IDIFLKAAGYLDCAVQNVLPQLPNPLRKELPVDLAEGVLRALCLQALGQSVDIQLGMAID 240

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHG 300
           S KATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKH+L ++WKY EAKAAAYYYHG
Sbjct: 241 SAKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHRLLIEWKYVEAKAAAYYYHG 300

Query: 301 LILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIP 360
           LILDEGNTEK HGMAVAALQAADEYFKESK+ACEAFN A PLSR P LWGTMKYLS+KIP
Sbjct: 301 LILDEGNTEKSHGMAVAALQAADEYFKESKRACEAFNAASPLSRKPLLWGTMKYLSDKIP 360

Query: 361 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGAN 420
           KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPD+FQLPP   SW +EN+  GQA +N
Sbjct: 361 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDDFQLPPADSSWNEENVVAGQASSN 420

Query: 421 QPKGD 425
             + +
Sbjct: 421 HLRSE 425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576604|ref|XP_003556420.1| PREDICTED: uncharacterized protein LOC100781733 [Glycine max]

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/420 (89%), Positives = 392/420 (93%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGCF+ST KD+GGNRRRPG+IGEVSVYVPGLRIPKPVDF+QSLGD LSKN+VERLSALRT
Sbjct: 1   MGCFVSTPKDSGGNRRRPGSIGEVSVYVPGLRIPKPVDFAQSLGDYLSKNIVERLSALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QEGPTITRT+RKSATQHGGSTLADL QALEDYL VLLGLV++GS LQYKVQF 
Sbjct: 61  RIVVMAGQEGPTITRTKRKSATQHGGSTLADLQQALEDYLLVLLGLVENGSHLQYKVQFA 120

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           WVNQEDEAEET +SNAWYEVLSVLHLMAML LSQ++LLLLPRTS DG+QPKVSEESRRAS
Sbjct: 121 WVNQEDEAEETTMSNAWYEVLSVLHLMAMLLLSQSDLLLLPRTSTDGHQPKVSEESRRAS 180

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           VDIFLKAAGYLDCAVRHVLPQ+  ELRR LPVDLAEG LRALCLQALGQGVDIQLGMAID
Sbjct: 181 VDIFLKAAGYLDCAVRHVLPQLPGELRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAID 240

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHG 300
           STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKH LFVKWKY EAKAAAYYYHG
Sbjct: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHCLFVKWKYIEAKAAAYYYHG 300

Query: 301 LILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIP 360
           LILDEGNTEK  GMAVAALQAADEYFKESKK CEAFN APPLSRNPPLWGTMKYL EKIP
Sbjct: 301 LILDEGNTEKSQGMAVAALQAADEYFKESKKLCEAFNAAPPLSRNPPLWGTMKYLYEKIP 360

Query: 361 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGAN 420
           KDTSSKVRINRDLYSYE+IMETAPTLPDFALALKPDE+QLP V PSW  EN+  GQ+GA 
Sbjct: 361 KDTSSKVRINRDLYSYERIMETAPTLPDFALALKPDEYQLPQVDPSWRTENVKGGQSGAT 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535288|ref|XP_003536180.1| PREDICTED: uncharacterized protein LOC100813397 [Glycine max]

 Score =  753 bits (1944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/420 (88%), Positives = 390/420 (92%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGCF+ST KD+GGNRRRPG+IGEVSVYVPGLRIPKPVDF+QSLGD LSKN+VERLSALRT
Sbjct: 1   MGCFVSTPKDSGGNRRRPGSIGEVSVYVPGLRIPKPVDFTQSLGDYLSKNIVERLSALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QEGPTITRT+RKSATQHGGSTLADL QALEDYLPVLLGLV++GS LQYKVQF 
Sbjct: 61  RIVVMAGQEGPTITRTKRKSATQHGGSTLADLQQALEDYLPVLLGLVENGSHLQYKVQFD 120

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           WVNQED+ EET +SNAWYEVLSVLHLMAML LSQANLLLLPRTS D +QPKVSEESRRAS
Sbjct: 121 WVNQEDDTEETTMSNAWYEVLSVLHLMAMLLLSQANLLLLPRTSTDSHQPKVSEESRRAS 180

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           VDIFLKAAGYLDCAVRHVLPQ+  ELRR LPVDL EG LRALCLQALGQGVDIQLGMAID
Sbjct: 181 VDIFLKAAGYLDCAVRHVLPQLPGELRRNLPVDLTEGVLRALCLQALGQGVDIQLGMAID 240

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHG 300
           STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKH+LFVKWKY EAKAAAYYYHG
Sbjct: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHRLFVKWKYIEAKAAAYYYHG 300

Query: 301 LILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIP 360
           LILDEGNTEK HGMAVA+LQAADEYFKESKK CEAFN  PPLSRNPPLWGTMKYL EKIP
Sbjct: 301 LILDEGNTEKSHGMAVASLQAADEYFKESKKLCEAFNAVPPLSRNPPLWGTMKYLYEKIP 360

Query: 361 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGAN 420
           KDTSSKVRINRDLYSYE+IMETAPTLPDFALALKPDE+QLP + PSW  EN+  GQ+G  
Sbjct: 361 KDTSSKVRINRDLYSYERIMETAPTLPDFALALKPDEYQLPQMDPSWRTENVKDGQSGTT 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559999|ref|XP_003548283.1| PREDICTED: uncharacterized protein LOC100809057 [Glycine max]

 Score =  744 bits (1920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/427 (85%), Positives = 386/427 (90%), Gaps = 3/427 (0%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGC +S  KD+GGNRRRPG+IGE+SVYVPGLRIPKPVDF+QSLGD LSKN+VERLSALRT
Sbjct: 1   MGCVVSAPKDSGGNRRRPGSIGELSVYVPGLRIPKPVDFAQSLGDYLSKNIVERLSALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QEGPTITRT+RK  TQHGGSTLADL QALEDYLPV+LGLVK+GS LQYKVQF 
Sbjct: 61  RIVVMAGQEGPTITRTKRK--TQHGGSTLADLLQALEDYLPVVLGLVKNGSHLQYKVQFT 118

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSA-DGYQPKVSEESRRA 179
           WVNQED+ EET +SNAWYEVLSVLHLMAMLSLSQANLLL PR+S+ +G+ PKVSEESRRA
Sbjct: 119 WVNQEDDKEETTMSNAWYEVLSVLHLMAMLSLSQANLLLFPRSSSSNGHLPKVSEESRRA 178

Query: 180 SVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI 239
           SVDIFLKAAGYLDCAV+HVLPQ+  ELRR LPVDLAEG LRALCLQALGQ +DIQLGMAI
Sbjct: 179 SVDIFLKAAGYLDCAVKHVLPQLPVELRRNLPVDLAEGVLRALCLQALGQAIDIQLGMAI 238

Query: 240 DSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYH 299
           DSTKATLAVKRRLACEMVK WQQAQDNIMNLPLANGWGEKH LFVKWKY EAKAAAYYYH
Sbjct: 239 DSTKATLAVKRRLACEMVKCWQQAQDNIMNLPLANGWGEKHCLFVKWKYVEAKAAAYYYH 298

Query: 300 GLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKI 359
           GLILDEGNTEK HGMAVAALQAADEYFKESKK CEAFN A PLSRN P WGTMKYLSEKI
Sbjct: 299 GLILDEGNTEKSHGMAVAALQAADEYFKESKKLCEAFNAASPLSRNSPPWGTMKYLSEKI 358

Query: 360 PKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGA 419
           PKDTSSKVRINRDLYSYE+IMETAPTLPDF+LALKPDE+QLP V  SW  EN+  GQ   
Sbjct: 359 PKDTSSKVRINRDLYSYERIMETAPTLPDFSLALKPDEYQLPQVDSSWRTENIKVGQTDP 418

Query: 420 NQPKGDR 426
           N  KGD+
Sbjct: 419 NHLKGDK 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842093|ref|XP_002888928.1| hypothetical protein ARALYDRAFT_895200 [Arabidopsis lyrata subsp. lyrata] gi|297334769|gb|EFH65187.1| hypothetical protein ARALYDRAFT_895200 [Arabidopsis lyrata subsp. lyrata]

 Score =  734 bits (1895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/426 (83%), Positives = 383/426 (89%), Gaps = 3/426 (0%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGCF S  KDTGGNRR+P +IG+VSVYVPGLRIPKPV+FSQSLGD L K +VERL+ALRT
Sbjct: 1   MGCFASRPKDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QEGPTITRTRRK  TQHGGSTLADLHQALEDYLPVLLGL KDGS LQ KVQF 
Sbjct: 61  RIVVMANQEGPTITRTRRK--TQHGGSTLADLHQALEDYLPVLLGLTKDGSHLQCKVQFN 118

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           WVNQEDE EETAISN WYE+LSVLHLMAML +SQANLLLLPR S+DGY PK+SEE+RRAS
Sbjct: 119 WVNQEDEQEETAISNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRAS 178

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIFLKAAGYLDCAV+HVLPQ S ELRR LPVDLAEG LRALCLQALGQGVDIQLGMAID
Sbjct: 179 IDIFLKAAGYLDCAVKHVLPQFSTELRRSLPVDLAEGALRALCLQALGQGVDIQLGMAID 238

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHG 300
           S KATLAVKRRL+CEMVKYWQQAQDN+MNLPLANGWGEKH LFVKWKY EAKAAAYYYHG
Sbjct: 239 SAKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHSLFVKWKYVEAKAAAYYYHG 298

Query: 301 LILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIP 360
           LILDEGNTEK HGMAVAALQAADE +KESKKA EAFN + P SR PPL+GTMKYLSEKIP
Sbjct: 299 LILDEGNTEKSHGMAVAALQAADECYKESKKASEAFNTSSPTSRTPPLFGTMKYLSEKIP 358

Query: 361 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGAN 420
           K+TSSKVRINRDLYSYEKIMETAPTLPDFALALKPDE+QLP V  SW+++++   +  +N
Sbjct: 359 KETSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPSVDASWSEDSLQTKKT-SN 417

Query: 421 QPKGDR 426
             KG++
Sbjct: 418 HIKGNQ 423

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557094|ref|XP_002519579.1| conserved hypothetical protein [Ricinus communis] gi|223541237|gb|EEF42790.1| conserved hypothetical protein [Ricinus communis]

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/426 (84%), Positives = 390/426 (91%), Gaps = 7/426 (1%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGC +ST K++GGNRR+PG+IGEV VY+PG RIPK VDFS SLGD+LSKN+VERLSALRT
Sbjct: 1   MGCIVSTPKESGGNRRKPGSIGEVFVYIPGFRIPKAVDFSVSLGDHLSKNLVERLSALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QE PT+TRT+RK+ATQHGGSTLADLHQALEDYLP+LLGLVKDGS LQ+KVQFV
Sbjct: 61  RIVVMAGQEAPTVTRTKRKNATQHGGSTLADLHQALEDYLPILLGLVKDGSHLQHKVQFV 120

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           W+NQED+AEETA+SNAWYEVLSVLHLMAML LSQANLLLLPRTSADGYQPKVS ESRRAS
Sbjct: 121 WINQEDDAEETAMSNAWYEVLSVLHLMAMLLLSQANLLLLPRTSADGYQPKVSAESRRAS 180

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIFLKAAGYLDCAVRHVLPQ    LRR+LPVDLAEG LRALCLQALGQ VDIQLGMAID
Sbjct: 181 IDIFLKAAGYLDCAVRHVLPQFPAALRRDLPVDLAEGVLRALCLQALGQVVDIQLGMAID 240

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHG 300
           S KATLAVKRRLACEMVKYWQQAQDN+MNL L NGWGEKH+LFVKWKY EAKAAAYYYHG
Sbjct: 241 SAKATLAVKRRLACEMVKYWQQAQDNLMNLLLTNGWGEKHRLFVKWKYVEAKAAAYYYHG 300

Query: 301 LILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIP 360
           LILDEGNTEK HGMAVAALQAADEYFKES++ACEAFN A PLSRNPPLWGT+KYLSEKIP
Sbjct: 301 LILDEGNTEKSHGMAVAALQAADEYFKESRRACEAFNAASPLSRNPPLWGTVKYLSEKIP 360

Query: 361 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGAN 420
           KDTSSKVRINRDLYS+EKIMETAPTLPDFAL+LKPD++QLP V  SW +EN+       N
Sbjct: 361 KDTSSKVRINRDLYSHEKIMETAPTLPDFALSLKPDDYQLPSVDSSWNEENV-------N 413

Query: 421 QPKGDR 426
           Q KGDR
Sbjct: 414 QLKGDR 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531017|ref|XP_003534075.1| PREDICTED: uncharacterized protein LOC100820472 [Glycine max]

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/427 (84%), Positives = 387/427 (90%), Gaps = 3/427 (0%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGC +ST+KD+GGNRRRPG+IGEVSVYVPGLRIPKPVDF+QSLG+ LSKN+VE LSALR 
Sbjct: 1   MGCVVSTTKDSGGNRRRPGSIGEVSVYVPGLRIPKPVDFAQSLGNYLSKNIVEHLSALRM 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIV+MA QEGPTITRT+RK  TQHGGS LADL QALEDYLPV+LGLVKDGS LQYKVQF 
Sbjct: 61  RIVIMAGQEGPTITRTKRK--TQHGGSMLADLLQALEDYLPVVLGLVKDGSHLQYKVQFT 118

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSA-DGYQPKVSEESRRA 179
           WVNQED+ EET +SNAWYEVLSVLHLMAMLSLSQANLLLLPR+S+ DG+ PKVSEESRR 
Sbjct: 119 WVNQEDDKEETTMSNAWYEVLSVLHLMAMLSLSQANLLLLPRSSSSDGHLPKVSEESRRT 178

Query: 180 SVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI 239
           SVDIFLKAAGYLDCAV+HVLPQ+  ELRR LPVDLAEG LRALCLQALGQG+DIQLGMAI
Sbjct: 179 SVDIFLKAAGYLDCAVKHVLPQLPVELRRNLPVDLAEGVLRALCLQALGQGIDIQLGMAI 238

Query: 240 DSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYH 299
           DSTKATLAVKRRLACEMVK WQQAQDNIMNLPLANGWGEKH LFVKWKY EAKAAAYYYH
Sbjct: 239 DSTKATLAVKRRLACEMVKCWQQAQDNIMNLPLANGWGEKHCLFVKWKYVEAKAAAYYYH 298

Query: 300 GLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKI 359
           GLILDEGNTEK HGMAVAALQAADEY+KESKK CEAFN A PLSRNPP WGT+KYLSEKI
Sbjct: 299 GLILDEGNTEKSHGMAVAALQAADEYYKESKKLCEAFNAASPLSRNPPPWGTVKYLSEKI 358

Query: 360 PKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGA 419
           PKDTSSKVRINRDLYSYE+IMETAPTLPDF+LALKPDE+QLP V  SW  EN+  GQ   
Sbjct: 359 PKDTSSKVRINRDLYSYERIMETAPTLPDFSLALKPDEYQLPQVDSSWRTENIKVGQTDP 418

Query: 420 NQPKGDR 426
           N  KGD+
Sbjct: 419 NHLKGDK 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219459|ref|NP_177482.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|42572093|ref|NP_974137.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|42572095|ref|NP_974138.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|11120790|gb|AAG30970.1|AC012396_6 hypothetical protein [Arabidopsis thaliana] gi|18252173|gb|AAL61919.1| unknown protein [Arabidopsis thaliana] gi|54606850|gb|AAV34773.1| At1g73390 [Arabidopsis thaliana] gi|332197332|gb|AEE35453.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|332197333|gb|AEE35454.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|332197334|gb|AEE35455.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana]

 Score =  718 bits (1854), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/412 (83%), Positives = 370/412 (89%), Gaps = 2/412 (0%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGCF S   DTGGNRR+P +IG+VSVYVPGLRIPKPV+FSQSLGD L K +VERL+ALRT
Sbjct: 1   MGCFASRPNDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QEGPTITRTRRK  TQHGGSTLADLH ALEDY+PVLLGL KDGS LQ+KVQF 
Sbjct: 61  RIVVMANQEGPTITRTRRK--TQHGGSTLADLHHALEDYIPVLLGLTKDGSHLQFKVQFN 118

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           WVNQEDE EETA+SN WYE+LSVLHLMAML +SQANLLLLPR S+DGY PK+SEE+RRAS
Sbjct: 119 WVNQEDEEEETAMSNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRAS 178

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIFLKAAGYLDCAV+HVLP  S E RR LP+DLAEG LRALCLQALGQGVDIQLGMAID
Sbjct: 179 IDIFLKAAGYLDCAVKHVLPHFSTEQRRSLPIDLAEGALRALCLQALGQGVDIQLGMAID 238

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHG 300
           S KATLAVKRRL+CEMVKYWQQAQDN+MNLPLANGWGEKH LFVKWKY EAKAAAYYYHG
Sbjct: 239 SAKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHMLFVKWKYVEAKAAAYYYHG 298

Query: 301 LILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIP 360
           LILDEGNTEK HGMAVAALQAADE  KESKKA EAFN + P SR P L+GTMKYLSEKIP
Sbjct: 299 LILDEGNTEKSHGMAVAALQAADECLKESKKASEAFNTSSPTSRTPSLFGTMKYLSEKIP 358

Query: 361 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENM 412
           K+TSSKVRINRDLYSYEKIMETAPTLPDFALALKPDE+QLP V  SW++ ++
Sbjct: 359 KETSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPSVDASWSEASL 410

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439525|ref|XP_004137536.1| PREDICTED: uncharacterized protein LOC101207897 [Cucumis sativus] gi|449514864|ref|XP_004164501.1| PREDICTED: uncharacterized LOC101207897 [Cucumis sativus]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/428 (82%), Positives = 372/428 (86%), Gaps = 29/428 (6%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGC  S   D GGNRRRPGNIGEVSVYVP                           ALRT
Sbjct: 1   MGCLASKPADNGGNRRRPGNIGEVSVYVP---------------------------ALRT 33

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RI+VMA QEGPTITRTRRK+ATQHGGSTLADL QALEDYLPVLLGLVKDG+QLQ+KVQF 
Sbjct: 34  RIIVMAGQEGPTITRTRRKTATQHGGSTLADLQQALEDYLPVLLGLVKDGNQLQHKVQFA 93

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           W+NQED+ EETA+SNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS
Sbjct: 94  WINQEDDLEETAMSNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 153

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIF+KAAGYLDCAVRHVLPQ+  E RR LPVDLAEG LRALCLQALGQGVDIQLGMAID
Sbjct: 154 IDIFVKAAGYLDCAVRHVLPQLPVEFRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAID 213

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHG 300
           STKATLAVKRRLACEMVKYWQQAQDNIMNLPL+NGWGEKH+LFVKWKY EAKAAAYYYHG
Sbjct: 214 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLSNGWGEKHRLFVKWKYIEAKAAAYYYHG 273

Query: 301 LILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIP 360
           LILDEGNTEK HGMAVAALQAADEYFKESKKACEAFN APPLSRNPPL+GTMKYLSEKIP
Sbjct: 274 LILDEGNTEKSHGMAVAALQAADEYFKESKKACEAFNSAPPLSRNPPLFGTMKYLSEKIP 333

Query: 361 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENM-NRGQAGA 419
           KD SSKVRINRDLYS+EKI+ETAPTLPDFALALKPDEFQLP V PSW +EN+ NRGQ  A
Sbjct: 334 KDASSKVRINRDLYSFEKIVETAPTLPDFALALKPDEFQLPAVDPSWNEENIVNRGQVVA 393

Query: 420 -NQPKGDR 426
             Q K D+
Sbjct: 394 PKQLKSDQ 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
TAIR|locus:2206845	419	AT1G73390 "AT1G73390" [Arabido	0.960	0.978	0.769	2.2e-167
TAIR|locus:2030893	405	AT1G17940 "AT1G17940" [Arabido	0.934	0.985	0.786	5.5e-164
TAIR|locus:2159103	401	AT5G14020 [Arabidopsis thalian	0.903	0.962	0.368	1.7e-59

TAIR|locus:2206845 AT1G73390 "AT1G73390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1628 (578.1 bits), Expect = 2.2e-167, P = 2.2e-167
 Identities = 317/412 (76%), Positives = 343/412 (83%)

Query:     1 MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
             MGCF S   DTGGNRR+P +IG+VSVYVPGLRIPKPV+FSQSLGD L K +VERL+ALRT
Sbjct:     1 MGCFASRPNDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRT 60

Query:    61 RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
             RIVVMA QEGPTITRTRRK  TQHGGSTLADLH ALEDY+PVLLGL KDGS LQ+KVQF 
Sbjct:    61 RIVVMANQEGPTITRTRRK--TQHGGSTLADLHHALEDYIPVLLGLTKDGSHLQFKVQFN 118

Query:   121 WVNQEDEAEETAISNAWYEVLSVLHXXXXXXXXXXXXXXXPRTSADGYQPKVSEESRRAS 180
             WVNQEDE EETA+SN WYE+LSVLH               PR S+DGY PK+SEE+RRAS
Sbjct:   119 WVNQEDEEEETAMSNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRAS 178

Query:   181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
             +DIFLKAAGYLDCAV+HVLP  S E RR LP+DLAEG LRALCLQALGQGVDIQLGMAID
Sbjct:   179 IDIFLKAAGYLDCAVKHVLPHFSTEQRRSLPIDLAEGALRALCLQALGQGVDIQLGMAID 238

Query:   241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVXXXXXXXXXXXXXXHG 300
             S KATLAVKRRL+CEMVKYWQQAQDN+MNLPLANGWGEKH LFV              HG
Sbjct:   239 SAKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHMLFVKWKYVEAKAAAYYYHG 298

Query:   301 LILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIP 360
             LILDEGNTEK HGMAVAALQAADE  KESKKA EAFN + P SR P L+GTMKYLSEKIP
Sbjct:   299 LILDEGNTEKSHGMAVAALQAADECLKESKKASEAFNTSSPTSRTPSLFGTMKYLSEKIP 358

Query:   361 KDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENM 412
             K+TSSKVRINRDLYSYEKIMETAPTLPDFALALKPDE+QLP V  SW++ ++
Sbjct:   359 KETSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPSVDASWSEASL 410

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2030893 AT1G17940 "AT1G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 1596 (566.9 bits), Expect = 5.5e-164, P = 5.5e-164
 Identities = 316/402 (78%), Positives = 337/402 (83%)

Query:     1 MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
             MGCF ST KD+GGNRR+P +IGEVSVYVPGLRIP+ VDF QSLGD L K +VERL+ALRT
Sbjct:     1 MGCFASTPKDSGGNRRKPTSIGEVSVYVPGLRIPRAVDFLQSLGDQLPKTLVERLTALRT 60

Query:    61 RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
             RIVVMA QEGPTITRTRRK  TQHGGSTL DLHQAL DYLPV+LGL KDGS LQ+KVQF 
Sbjct:    61 RIVVMANQEGPTITRTRRK--TQHGGSTLLDLHQALLDYLPVVLGLTKDGSHLQFKVQFN 118

Query:   121 WVNQEDEAEETAISNAWYEVLSVLHXXXXXXXXXXXXXXXPRTSADGYQ-PKVSEESRRA 179
             WVNQEDE EET +SN WYEVLSVLH               PR S+DG+  PKVSEE+RR 
Sbjct:   119 WVNQEDEEEETEMSNVWYEVLSVLHLMAMLQMSQANLLLLPRGSSDGHNHPKVSEENRRT 178

Query:   180 SVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI 239
             S+DIFLKAAGYLDCAV+HVLPQ S E RR LPVDLAEG LRALCLQALGQGVDIQLGMAI
Sbjct:   179 SIDIFLKAAGYLDCAVKHVLPQFSAEQRRSLPVDLAEGTLRALCLQALGQGVDIQLGMAI 238

Query:   240 DSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVXXXXXXXXXXXXXXH 299
             DS+KATLAVKRRL+CEMVKYWQQAQDN+MNLPLANGWGEKH LFV              H
Sbjct:   239 DSSKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHGLFVKWKYVEAKAAAYYYH 298

Query:   300 GLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKI 359
             GLILDEGNTEK HGMAVAALQAADE FKESKKA EAFN + P SR PPL+GTMKYL+EKI
Sbjct:   299 GLILDEGNTEKSHGMAVAALQAADECFKESKKASEAFNASAPTSRTPPLFGTMKYLTEKI 358

Query:   360 PKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLP 401
             PKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDE+QLP
Sbjct:   359 PKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLP 400

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2159103 AT5G14020 [Arabidopsis thaliana (taxid:3702)]

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 152/412 (36%), Positives = 221/412 (53%)

Query:     1 MGCFLSTSKDTGG-NRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALR 59
             MGC  ST    G  N++R   I E  V+V   R+P   D  + L     K  + RL+ LR
Sbjct:     1 MGCAQSTIAVVGRKNKKRI--IQESVVFVLQFRVPVQSDLQRQLKGVSPKTTINRLTCLR 58

Query:    60 TRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQ-LQYKVQ 118
              +I ++A   G               GS +++L  ALE+YL +L GL+K     ++  V+
Sbjct:    59 NQIELVAEDTG---------------GSAISELRTALEEYLSLLSGLIKKSKDGMEGCVE 103

Query:   119 FVWVNQED-EAEETAISNAWYEVLSVLHXXXXXXXXXXXXXXXPR---TSADGYQPKV-S 173
               W    D    E   +N W E+L V+H               P+    S  G   +V S
Sbjct:   104 LKWRTLGDGRRAEICCTNLWMEMLIVIHMMAALALTEANSLMIPKDCYASGSGNGVRVVS 163

Query:   174 EESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDI 233
              + RR +VD+ LKA+GYL+  VR +L Q+  +++ +LP D+ E  L+ L +QALGQG +I
Sbjct:   164 TDCRRDAVDLLLKASGYLEFCVREILTQLPHDIKSKLPDDMQESVLQTLSIQALGQGTEI 223

Query:   234 QLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLP-LANGWGEKHKLFVXXXXXXXX 292
             QLG+A+DS KATL+VKRR+ACE V Y+ QA   + +   +++G  +K   F+        
Sbjct:   224 QLGLAVDSQKATLSVKRRIACEQVIYFTQAYHCLSSCEAVSHGCAKKLLRFIYWKFLEAK 283

Query:   293 XXXXXXHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTM 352
                   HGL+ D+G+    H  AV    AA E   ESKKAC +F +APP++R PP+WG M
Sbjct:   284 AAAYYYHGLVTDKGSEPACHLSAVCCFLAAAEILGESKKACLSFCLAPPVTRAPPMWGVM 343

Query:   353 KYLSEKIPKDTSSKVRINRDLYSYE-KIMETAPTLPDFALALKPDEFQLPPV 403
             K+LS+KIP+    K +    L   E K M+  P LPDF L+L+PD+F+LP +
Sbjct:   344 KHLSQKIPEVAFRKSQTYGYLLEEEEKAMQCLPELPDFQLSLRPDDFELPEI 395


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.394    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      427       398   0.00097  117 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  252 KB (2135 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.19u 0.17s 30.36t   Elapsed:  00:00:02
  Total cpu time:  30.19u 0.17s 30.36t   Elapsed:  00:00:02
  Start:  Fri May 10 13:34:09 2013   End:  Fri May 10 13:34:11 2013

GO:0005773 "vacuole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	427
cd09034	345	cd09034, BRO1_Alix_like, Protein-interacting Bro1-	3e-99
pfam03097	374	pfam03097, BRO1, BRO1-like domain	7e-69
smart01041	381	smart01041, BRO1, BRO1-like domain	6e-49
cd09241	355	cd09241, BRO1_ScRim20-like, Protein-interacting, N	3e-05
cd09243	353	cd09243, BRO1_Brox_like, Protein-interacting Bro1-	5e-04
cd09245	413	cd09245, BRO1_UmRIM23-like, Protein-interacting, B	8e-04
cd09247	346	cd09247, BRO1_Alix_like_2, Protein-interacting Bro	0.002

>gnl|CDD|185761 cd09034, BRO1_Alix_like, Protein-interacting Bro1-like domain of mammalian Alix and related domains

 Score =  299 bits (768), Expect = 3e-99
 Identities = 131/382 (34%), Positives = 184/382 (48%), Gaps = 53/382 (13%)

Query: 23  EVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSAT 82
           +V V +    IPK     +       ++++E+LS LR  IV                   
Sbjct: 13  DVKVPLSK-FIPKNYGELE---ATAVEDLIEKLSKLRNNIVTE----------------- 51

Query: 83  QHGGSTLADLHQALEDYLPVLLGLVK--DGSQLQYKVQFVWVNQEDEAEETAISNAWYEV 140
           Q+  +T  +L +AL++YLP LLGL K     +L+  V+F W +  D  +E+A ++  YE+
Sbjct: 52  QNNDTTCENLLEALKEYLPYLLGLEKKLPFQKLRDNVEFTWTDSFDTKKESA-TSLRYEL 110

Query: 141 LSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLP 200
           LS+L  +A L+   AN  L+            SEE  + ++    KAAGY +    HVLP
Sbjct: 111 LSILFNLAALASQLANEKLITG----------SEEDLKQAIKSLQKAAGYFEYLKEHVLP 160

Query: 201 QMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYW 260
               EL    PVDL E  L AL L  L Q  +  L  A +  KA L++  RLACE  KY+
Sbjct: 161 LPPDEL----PVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARLACEAAKYY 216

Query: 261 QQAQDNI--MNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAA 318
           ++A   +  ++L       +K  LF+KWK    KA AYYYHGL LDE N     G A+A 
Sbjct: 217 EEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANK---IGEAIAR 273

Query: 319 LQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEK 378
           LQAA E  KES++ C++F           +WG +K L EKI K+     R N  +Y  E 
Sbjct: 274 LQAALELLKESERLCKSF--------LLDVWGNLKKLKEKIEKELEKAERENDFIYFEEV 325

Query: 379 IMETAPTLPDFALALKPDEFQL 400
             E    LP+   AL      L
Sbjct: 326 PPED--PLPEIKGALLVKPPPL 345

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 (in the case of Alix, HD-PTP, and Brox) and Snf7 (in the case of yeast Bro1, and Rim20). The single domain protein human Brox, and the isolated Bro1-like domains of Alix, HD-PTP and Rhophilin can bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid. Alix, HD-PTP, Bro1, and Rim20 also have a V-shaped (V) domain, which in the case of Alix, has been shown to be a dimerization domain and to contain a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in this superfamily. Alix, HD-PTP and Bro1 also have a proline-rich region (PRR); the Alix PRR binds multiple partners. Rhophilin-1, and -2, in addition to this Bro1-like domain, have an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. HD-PTP is encoded by the PTPN23 gene, a tumor suppressor gene candidate frequently absent in human kidney, breast, lung, and cervical tumors. This protein has a C-terminal, catalytically inactive tyrosine phosphatase domain. Length = 345

>gnl|CDD|217365 pfam03097, BRO1, BRO1-like domain

 Score =  222 bits (568), Expect = 7e-69
 Identities = 93/407 (22%), Positives = 146/407 (35%), Gaps = 64/407 (15%)

Query: 26  VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHG 85
           +    L+  K VD S+ L D +         +L         ++        R+ A    
Sbjct: 1   LLPLPLKETKEVDLSKPLKDYILSTY-GEDPSLF--------EDDLAELNKLRQDAVNVP 51

Query: 86  GSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLH 145
           GS      + L  Y   L  L K     Q  V+F W +  D       S+  +E  SVL 
Sbjct: 52  GSPDESGLELLYRYYGQLEALEKRFPDDQLGVEFTWYDAFDTGSPVTQSSLAFEKASVLF 111

Query: 146 LMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPE 205
            +A L    A             Q + ++E  +A+ D F KAAG  +         +   
Sbjct: 112 NLAALYSQIAAS-----------QNRDTDEGLKAACDYFQKAAGAFE--------YLKEN 152

Query: 206 LRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI-DSTKATLAVKRRLACEMVKYWQQAQ 264
                 VDL+   L+ L    L Q  +     AI D  K +L  K  LA ++   +++A 
Sbjct: 153 FLHSPSVDLSPETLKFLESLMLAQAQECFFEKAILDGKKDSLIAK--LAAQVSDLYEEAL 210

Query: 265 DNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADE 324
           + +   P+  G  ++    V+ K    KA A+YYH L L+E   +K +G A+A LQ A  
Sbjct: 211 EALQESPVKTGIPKEWIKHVQLKQHYFKALAHYYHALALEE---KKKYGEAIARLQKALS 267

Query: 325 YFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--- 381
             KE+ K         PLS +  L   +K L ++I +      + N  +Y  E   E   
Sbjct: 268 ALKEALK-------LAPLSSSSELLEDLKGLKDRIKEKLKEAEKDNDFIYHEEVPDEVSL 320

Query: 382 ------------------TAPTLPDFALALKPDEFQLPPVHPSWTDE 410
                              +   PD    L P           +++ 
Sbjct: 321 PPIKPAPLVKPIPPNELTESVKGPDLFKKLVPIAVHEALSA--YSER 365

This domain is found in a number proteins including Rhophilin and BRO1. It is known to have a role in endosomal targeting. ESCRT-III subunit Snf7 binds to a conserved hydrophobic patch in the BRO1 domain that is required for protein complex formation and for the protein-sorting function of BRO1. Length = 374

>gnl|CDD|214990 smart01041, BRO1, BRO1-like domain

 Score =  170 bits (433), Expect = 6e-49
 Identities = 89/380 (23%), Positives = 142/380 (37%), Gaps = 37/380 (9%)

Query: 26  VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHG 85
           +    L+  K VDFS+ L D + +   E  S+           E   + R R+  A +  
Sbjct: 1   LIPLPLKETKEVDFSKPLKDYIKETYSEDSSSYE--------DEIAELNRLRQ--AARTP 50

Query: 86  GSTLADLHQALEDYLPVLLGLVK--DGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSV 143
               + L   L+ Y   L  L       + Q K+ F W +  D    +  S+  +E  SV
Sbjct: 51  SRDESGLELLLK-YYGQLEALELRFPPPEGQLKLSFTWYDSLDTGVPSTQSSLAFEKASV 109

Query: 144 LHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMS 203
           L  +  L    A             Q + +EE  + +   F +AAG  +    + L    
Sbjct: 110 LFNLGALYSQIAA-----------EQNRDTEEGLKEACKAFQQAAGVFNYLKENFLH--- 155

Query: 204 PELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI-DSTKATLAVKRRLACEMVKYWQQ 262
             L  E  VDL+   L AL    L Q  +     AI D  K   ++  +LA +  +Y+++
Sbjct: 156 -ALSTEPSVDLSPETLSALSSLMLAQAQECFFEKAILDGMKNKDSLIAKLAAQAAEYYEE 214

Query: 263 AQDNIMNL-PLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQA 321
           A   +    P+     +     V+ K    KA A+YY  L L+E N    +G A+A LQ 
Sbjct: 215 ALKALQTSEPVKGYIPKSWIKLVQVKAHHFKALAHYYQALDLEEANK---YGEAIARLQE 271

Query: 322 ADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME 381
           A E  KE+KK          L +   L   +  L + + +      + N  +Y       
Sbjct: 272 ALERLKEAKKHLRCK----KLGKADKLQEDLSGLKDVVEEKLKEAEKDNDFIYHERVPDI 327

Query: 382 TAPTLPDFALALKPDEFQLP 401
            +      A  +KP  F   
Sbjct: 328 VSLPPIKKAPLVKPPPFSEV 347

This domain is found in a number proteins including Rhophilin and BRO1. It is known to have a role in endosomal targeting. ESCRT-III subunit Snf7 binds to a conserved hydrophobic patch in the BRO1 domain that is required for protein complex formation and for the protein-sorting function of BRO1. Length = 381

>gnl|CDD|185764 cd09241, BRO1_ScRim20-like, Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 65/231 (28%), Positives = 99/231 (42%), Gaps = 38/231 (16%)

Query: 117 VQFVWVNQ-EDEAEETAISNAWY-EVLSVLH-LMAMLSLSQANLLLLPRTSADGYQPKVS 173
           ++F W      ++      ++   E  ++L+ L A+ S    +     R + +G      
Sbjct: 80  LEFTWYPTLGYKSSGPVSLSSLKFERANILYNLGALYSQLALSE---NRYTDEG------ 130

Query: 174 EESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRAL---CLQALGQG 230
              +RA    F  +AG  +  ++H+LP +SP        DL E  L+AL    L A  Q 
Sbjct: 131 --LKRA-CSYFQASAGCFEYILQHLLPTLSPPP------DLDENTLKALESLML-AQAQE 180

Query: 231 VDIQLGMAI-DSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLA-NGWGEKHKLFVKWKY 288
              Q   AI D TK +L  K  LA ++  Y+Q+A        L  + W   H L VK  +
Sbjct: 181 CFWQ--KAISDGTKDSLIAK--LAAQVSDYYQEALKYANKSDLIRSDW-INH-LKVKKHH 234

Query: 289 FEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVA 339
           F  KAAA+Y   L+  E +    +G  VA L+ A    KE+ K     N A
Sbjct: 235 F--KAAAHYRMALVALEKSK---YGEEVARLRVALAACKEALKEARYGNKA 280

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the case of Rim20. RIM20, and some other members of the BRO1_Alix_like superfamily including Alix, also have a V-shaped (V) domain. In the case of Alix, the V-domain is a dimerization domain that also contains a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in the V-domain superfamily. Rim20 localizes to endosomes under alkaline pH conditions. By binding Snf7, it may bring the protease Rim13 (a YPxL-containing transcription factor) into proximity with Rim101, and thus aid in the proteolytic activation of the latter. Rim20 and other intermediates in the Rim101 pathway play roles in the pathogenesis of fungal corneal infection during Candida albicans keratitis. Length = 355

>gnl|CDD|185766 cd09243, BRO1_Brox_like, Protein-interacting Bro1-like domain of human Brox1 and related proteins

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 44/257 (17%)

Query: 94  QALEDYLPVLLGLV--KDG----SQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLM 147
            A   YL +L G +   DG    S+L+Y + F W +     E +   +A +E+ S+L  +
Sbjct: 56  TAFNAYLSLLQGFILALDGKTQESKLRYLINFKWTDSLLGNEPSVQQDAIFELASMLFNV 115

Query: 148 AMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELR 207
           A+     A+ L       D     ++E+  +        AAG      + V     P+L 
Sbjct: 116 ALWYTKHASKLA---GKED-----ITEDEAKDVHKSLRTAAGIF----QFVKENYIPKLI 163

Query: 208 R--ELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQD 265
              E   DL    L A   Q   +  ++ +  AI+  K    +   LA E  K +Q+A D
Sbjct: 164 EPAEKGSDLDPRVLEAYINQCTAEAQEVTVARAIE-LKHNAGLISALAYETAKLFQKADD 222

Query: 266 NIMNLPLANGWGEKHKLFVKW-KYFEAK-----AAAYYYHG---LILDEGNTEKFHGMAV 316
           ++ +L          +   KW KY + K     A AY YHG   L  D+       G A+
Sbjct: 223 SLSSLDP--------EYSGKWRKYLQLKSVFYLAYAYCYHGETLLAKDKC------GEAI 268

Query: 317 AALQAADEYFKESKKAC 333
            +LQ +++ + +++  C
Sbjct: 269 RSLQESEKLYNKAEALC 285

This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (HIV-1) nucleocapsid. In addition to a Bro1-like domain, Brox also has a C-terminal thioester-linkage site for isoprenoid lipids (CaaX motif). This family lacks the V-shaped (V) domain found in many members of the BRO1_Alix_like superfamily. Length = 353

>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 47/210 (22%), Positives = 73/210 (34%), Gaps = 24/210 (11%)

Query: 36  PVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQA 95
            + FS     +   ++    +  R    + AA     +   +R        + L  + +A
Sbjct: 11  SISFSDFFNSDSYPSLPLNATTARAV--LRAA-----LKAHKRTPPGSQASNLLTVV-KA 62

Query: 96  LEDYLPVLLGLVKDGSQ----LQYKVQFVW-----VNQEDEAEETAISNAWYEVLSVLHL 146
           LE+YLP LL +    S     L+ +  F W          E+    +    YE+  VL  
Sbjct: 63  LEEYLPYLLAIDACLSHDELILKSEPTFEWRTTLSSTSGRESPRLPLPGLHYELAFVLLT 122

Query: 147 MAMLSLSQAN-----LLLLPRTSADGY-QPKVSEESRRASVDIFLKAAGYLDCAVRHVLP 200
            A    + A      L       +      K  +E  +A+  +  KAAG  D     VLP
Sbjct: 123 YAYALSNLARSILAPLGAYETDRSISDASRKQRDERLKAATKLLCKAAGIFDYLATRVLP 182

Query: 201 QMSPELRRE-LPVDLAEGDLRALCLQALGQ 229
           Q          P DL+   L AL   AL +
Sbjct: 183 QWESNRGGAPPPPDLSPEVLSALSSLALAE 212

This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Intermediates in the Rim101 pathway may play roles in the pathogenesis of fungal corneal infection during Candida albicans keratitis. This family lacks the V-shaped (V) domain found in many members of the BRO1_Alix_like superfamily. Length = 413

>gnl|CDD|185770 cd09247, BRO1_Alix_like_2, Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 58/304 (19%), Positives = 101/304 (33%), Gaps = 59/304 (19%)

Query: 46  NLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG 105
           +L +  +         I +  A+E                    A     LE YLP L  
Sbjct: 32  SLRRRAIIESINGSPFIALAIARE-------------------KAQYLPYLEGYLPALEN 72

Query: 106 LVK--DGSQLQYKVQFVWVN-QEDEAEETAISNA--WYEVLSVLHLMAMLSLSQANLLLL 160
           LV   D  QL  ++ F W +         A  +    +E+  VL L       +A   +L
Sbjct: 73  LVNHRDKVQLNEQLSFRWTSGLGSSKGPKAFQSDSLRFELGMVLFLYGAALRERA-SEVL 131

Query: 161 PRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQM-----SPELRRELPVDLA 215
           P                + +     +AAG  +      LP++     + E   E    LA
Sbjct: 132 PTEDF------------KEAATHLRRAAGVFEFLAHDELPRLRGALSADERPPECTPSLA 179

Query: 216 EGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANG 275
              +  LCL A  Q V  +      ++ + LA   +L     ++ ++A++  +   LA  
Sbjct: 180 LA-MSLLCL-AEAQAVTARKAEEKGTSPSLLA---KLHYGATQFLEEAKN--VLRSLATD 232

Query: 276 WGEKHKLFVKWKYFEA-----KAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESK 330
             +    F   ++  +     +A +  Y    L E       G+AV  L+ A    K+  
Sbjct: 233 LKDLDPRF--LRFISSCIALHEARSQLYLARRLKE---AGHIGVAVGVLREALRNLKKKL 287

Query: 331 KACE 334
              +
Sbjct: 288 PGSD 291

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in endosomal trafficking, with HD-PTP having additional functions in cell migration. Rim20 and Rim23 play roles in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. These domains bind components of the ESCRT-III complex: CHMP4 (in the case of Alix, Brox and HD-PTP) and Snf7 (in the case of yeast Bro1 and Rim20). The Bro1-like domains of Alix, HD-PTP, Brox, and Rhophilin can bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid. This family lacks the V-shaped (V) domain found in many members of the BRO1_Alix_like superfamily. Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	427
cd09243	353	BRO1_Brox_like Protein-interacting Bro1-like domai	100.0
cd09246	353	BRO1_Alix_like_1 Protein-interacting, N-terminal,	100.0
cd09239	361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	100.0
cd09240	346	BRO1_Alix Protein-interacting, N-terminal, Bro1-li	100.0
cd09242	348	BRO1_ScBro1_like Protein-interacting, N-terminal,	100.0
cd09241	355	BRO1_ScRim20-like Protein-interacting, N-terminal,	100.0
cd09244	350	BRO1_Rhophilin Protein-interacting Bro1-like domai	100.0
cd09034	345	BRO1_Alix_like Protein-interacting Bro1-like domai	100.0
PF03097	377	BRO1: BRO1-like domain; InterPro: IPR004328 The BR	100.0
cd09248	384	BRO1_Rhophilin_1 Protein-interacting Bro1-like dom	100.0
cd09247	346	BRO1_Alix_like_2 Protein-interacting Bro1-like dom	100.0
cd09245	413	BRO1_UmRIM23-like Protein-interacting, Bro1-like d	100.0
cd09249	385	BRO1_Rhophilin_2 Protein-interacting Bro1-like dom	100.0
KOG2220	714	consensus Predicted signal transduction protein [G	100.0
KOG2220	714	consensus Predicted signal transduction protein [G	98.26

>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins

Probab=100.00  E-value=7.7e-66  Score=516.77  Aligned_cols=335  Identities=22%  Similarity=0.372  Sum_probs=278.5

Q ss_pred             CCCCCCCCcccc--hHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhcc
Q 014319           29 PGLRIPKPVDFS--QSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGL  106 (427)
Q Consensus        29 p~lk~t~~vd~~--~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~~l  106 (427)
                      | ||-|..|+|.  ....+--..+++.++..-|++++++.               .++ .++++++.+++++|+++|.||
T Consensus         6 ~-~k~t~~~~f~~~~~~~~~~~~~~~~~~~~~r~~l~~~~---------------~~~-~~~~~~~~~a~~~Yl~ll~g~   68 (353)
T cd09243           6 P-LKATAPVKFDLKGVATTPAASKLCSDLRTARARLLELL---------------SDP-SNDVDTVKTAFNAYLSLLQGF   68 (353)
T ss_pred             c-cccccccccccccccCChhHHHHHHHHHHHHHHHHHHh---------------cCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            5 8999988883  22333344578999999999999998               777 789999999999999999999


Q ss_pred             cC------CCCCccceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHH
Q 014319          107 VK------DGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS  180 (427)
Q Consensus       107 ~~------~~~~~~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A  180 (427)
                      +.      .+++++..|.|+|+|+|+++.+++++|++||++|||||||++|+++|+... ..      .+ .++||+|+|
T Consensus        69 ~~~~d~~~~~~~l~~~v~F~W~dsl~~~~~~~q~sl~fEk~sVLfNigal~s~~As~~~-~~------~~-~s~e~~K~A  140 (353)
T cd09243          69 ILALDGKTQESKLRYLINFKWTDSLLGNEPSVQQDAIFELASMLFNVALWYTKHASKLA-GK------ED-ITEDEAKDV  140 (353)
T ss_pred             hhcccccCCccccceeeeEEEECCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHh-cc------CC-CCcHHHHHH
Confidence            86      578889999999999997778999999999999999999999998877432 21      23 355999999


Q ss_pred             HHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHH
Q 014319          181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYW  260 (427)
Q Consensus       181 ~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~Y  260 (427)
                      |++||+|||||+||++++++.++++  ..+|+||++++|++|..|||||||||+|+||++ ++++++||||||+|++++|
T Consensus       141 ~~~fq~AAG~F~~l~e~~l~~l~~~--~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~-~k~k~sliaKLA~q~a~~Y  217 (353)
T cd09243         141 HKSLRTAAGIFQFVKENYIPKLIEP--AEKGSDLDPRVLEAYINQCTAEAQEVTVARAIE-LKHNAGLISALAYETAKLF  217 (353)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccc--CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHH
Confidence            9999999999999999999876542  345689999999999999999999999999999 8999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCcccccccchhHHHHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 014319          261 QQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNVAP  340 (427)
Q Consensus       261 ~~A~~~l~~~~~~~~~~~k~~~~~~Wk~~~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~  340 (427)
                      ++|.+.+++...  .+..+|.-+..||..+|+|+||||+|..+++   +++||++|++|+.|.++++++.+.+++|....
T Consensus       218 ~~A~~~l~~~~~--~i~~~W~~~v~~K~~~f~A~A~y~~a~~l~e---~~k~GeaIa~L~~A~~~~k~a~~~~k~y~~~~  292 (353)
T cd09243         218 QKADDSLSSLDP--EYSGKWRKYLQLKSVFYLAYAYCYHGETLLA---KDKCGEAIRSLQESEKLYNKAEALCKEYAKTK  292 (353)
T ss_pred             HHHHHHHHcCCc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhHh---cchHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            999999986432  1111222233345556688999999999999   99999999999999999999999999887653


Q ss_pred             -C-CCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCCCCCCCCC---CccccccccC
Q 014319          341 -P-LSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPD---FALALKPDEF  398 (427)
Q Consensus       341 -~-~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~~lp~l~~---~~l~vkp~~f  398 (427)
                       + ....++.....+.+.+.|+ +.++++++|||||||++||+++|.++.   ++| |+|+||
T Consensus       293 ~~~~~~~~~~~~~~~~l~~~I~-~~L~~aeKDNdfIYh~~VP~e~p~~e~k~~~g~-~~~~~~  353 (353)
T cd09243         293 GPGTTAKPDQHLFFRKLGPLVK-RTLEKCERENGFIYHQKVPDEVPQLELKATYGL-VSPEEF  353 (353)
T ss_pred             CccccccchhhHHHHHHHHHHH-HHHHHHhhhhceeccccCCCCCCccccccccCc-cCCCCC
Confidence             2 2233443444566666664 689999999999999999999888883   569 999987

This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (

>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=100.00  E-value=3.6e-66  Score=522.60  Aligned_cols=331  Identities=19%  Similarity=0.228  Sum_probs=275.7

Q ss_pred             EecCCCCCCCCcccchHHhhHHHHHHHH-HHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014319           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVE-RLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL  104 (427)
Q Consensus        26 ~~~p~lk~t~~vd~~~~l~~~I~~~~~~-~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~  104 (427)
                      |.|| +|+|.+|||..||++||.++|.+ +.+.+++++..+. ++|+.++++.+    ++     +..++.+.+||.+|.
T Consensus         2 l~ip-~K~t~~vd~~~~L~~~I~~~y~~~~~~~~~~~l~~l~-~LR~~~~~~~~----~~-----~~~~~~l~~Yy~~L~   70 (353)
T cd09246           2 LSIH-RKKTETVDLVSPLRAYISETYSEREAQDAEDDLAELQ-QLRSEVRTLQE----KH-----AASRELLLRYYRALC   70 (353)
T ss_pred             CCCC-CCcccccchHhHHHHHHHHHcCCcCHHHHHHHHHHHH-HHHHHhhcCCC----CC-----hhHHHHHHHHHHHHH
Confidence            5788 99999999999999999999964 4667777776655 55555444432    12     344678999999999


Q ss_pred             cccCCCCC----ccceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHH
Q 014319          105 GLVKDGSQ----LQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS  180 (427)
Q Consensus       105 ~l~~~~~~----~~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A  180 (427)
                      .+..+++.    .+.+|.|+|+|+|+++.+++++|+.||++|||||+|++|+++|+           .+++.+++|+|+|
T Consensus        71 ~l~~rfp~~~~~~~~~v~F~W~d~~~~~~~~~~~sl~fEka~vlfNiaal~s~~a~-----------~~~~~~~~glK~A  139 (353)
T cd09246          71 AVESRFPISEESGHARVSFSWYDAFRPHRKATQANVHFEKAAVLFNLGALSSQLGL-----------QQDRTTAEGIKQA  139 (353)
T ss_pred             HHHccCCCCcccccccceeEeeccCCCCcceeecchHHHHHHHHHHHHHHHHHHHH-----------hcCCCChHHHHHH
Confidence            87644322    23589999999999878999999999999999999999999998           2577889999999


Q ss_pred             HHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHH
Q 014319          181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYW  260 (427)
Q Consensus       181 ~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~Y  260 (427)
                      |++||+|||||+||++++++.+..    .+++||++++|.+|..+||||||||+|+||+. ++++++||||||.|++++|
T Consensus       140 ~~~fq~AAG~F~~l~e~~~~~~~~----~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~-~~~k~sliAKLa~qv~~~Y  214 (353)
T cd09246         140 CHAFQAAAGAFAHLRDKVSGKTGG----FRTPDLTAECLGMLESLMLAQAQECFYEKAVA-DGKSPAVCSKLAKQARSYY  214 (353)
T ss_pred             HHHHHHHHHHHHHHHHhccccccC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHH
Confidence            999999999999999998765432    22479999999999999999999999999999 8999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCcccccccch-hHHHH-----HHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 014319          261 QQAQDNIMNLPLANGWGEKHKLFVKW-KYFEA-----KAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACE  334 (427)
Q Consensus       261 ~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~-----kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~  334 (427)
                      ++|.+.+++....+      .+...| +++++     +|+||||+|..+.+   +++||++||||+.|.+.++++.+..+
T Consensus       215 ~~a~~~l~~~~~~~------~~~~~W~~~~~~K~~~f~A~A~~~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~k~~~  285 (353)
T cd09246         215 EEALEALDSPPLKG------HFDKSWVAHVQLKAAYFRAEALYRAAKDLHE---KEDIGEEIARLRAASDALAEARKQAK  285 (353)
T ss_pred             HHHHHHHhcccccc------cccHHHHHHHHHHHHHHHHHHHHHHHHHhHH---hcchHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999998654311      356678 66654     67999999999999   99999999999999999999988754


Q ss_pred             hcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCCCC
Q 014319          335 AFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQLP  401 (427)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~lP  401 (427)
                      ...       .+.+.+.++.+.+.|+ +.++++++||||||||+||+  +||+|++..| |||+|++-|
T Consensus       286 ~~~-------~~~~~~~~~~l~~~v~-~~l~~aekdNd~IY~~~VP~~~~Lp~i~~~~~-vk~i~~~~~  345 (353)
T cd09246         286 GVN-------GDELIEAVSELEQVIN-ELLERAEKENDCVYLDRVPAPSDLPPLGAASM-VKPAAPPAE  345 (353)
T ss_pred             cCC-------cHHHHHHHHHHHHHHH-HHHHHHHhhhcccccCCCCCcccCCCCCCccc-ccCCCCcch
Confidence            221       1134566777777775 78999999999999999997  8999999999 999986554

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=100.00  E-value=8.5e-66  Score=520.23  Aligned_cols=331  Identities=17%  Similarity=0.153  Sum_probs=270.9

Q ss_pred             EEecCCCCCCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014319           25 SVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL  104 (427)
Q Consensus        25 ~~~~p~lk~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~  104 (427)
                      .|.+| ||+|++|||..||++||.++|.++...+.+++..+. ++|+.+.++.         .+ +..++.|.+||.+|.
T Consensus         8 ~l~ip-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~-~LR~~~~~~~---------~~-~~~~~~l~~Yy~qL~   75 (361)
T cd09239           8 MLWLQ-LKSSGEFTFQPALKKYILENYGEDPELYSEELKSLE-QLRQEAVNPP---------RD-FEGCSVLKRYYGQLH   75 (361)
T ss_pred             ccccC-CCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHhccCC---------CC-hHHHHHHHHHHHHHH
Confidence            46777 999999999999999999999877777777765554 4444433332         11 334667889999998


Q ss_pred             cccCCCCCc---cceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHH
Q 014319          105 GLVKDGSQL---QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASV  181 (427)
Q Consensus       105 ~l~~~~~~~---~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~  181 (427)
                      .+..+++..   ..+|.|+|+|+|++ .+++++|+.||++|||||||++|+++|+.           +++.++||+|.||
T Consensus        76 ~l~~rfp~~~~~~~~v~F~W~d~~~~-~~~~~~~l~fEka~vlfNigal~sq~a~~-----------~~r~~~~glK~A~  143 (361)
T cd09239          76 LLQSRFPMGAGQEAAVPFTWTDIFSG-SEVTHEDIKFEEASVLYNIGALHSQLGAS-----------DKRDSEEGMKVAC  143 (361)
T ss_pred             HHHhcCCCCccccccceeeeecccCC-CchhhhhHHHHHHHHHHHHHHHHHHHHHh-----------ccCCChHHHHHHH
Confidence            875443221   24799999999984 78899999999999999999999999982           5778999999999


Q ss_pred             HHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHH
Q 014319          182 DIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQ  261 (427)
Q Consensus       182 ~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~Y~  261 (427)
                      ++||+|||||+||++++++. ++      ++||++++|.+|..|||||||||+|+||+. ++++++||||||.|++++|+
T Consensus       144 ~~fq~AAG~F~~l~e~~~~~-~~------~~Dl~~~~l~~L~~lmLAQAQEc~~~Kai~-d~~k~sliAKLA~q~~~~Y~  215 (361)
T cd09239         144 THFQCAAWAFAYLREHYPQV-YG------AVDMSSQLLSFNYSLMLAQAQECLLEKSLL-DNRKSHITAKVSAQVVEYYK  215 (361)
T ss_pred             HHHHHHHHHHHHHHHhccCC-CC------cccCCHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHH
Confidence            99999999999999998653 32      159999999999999999999999999999 89999999999999999999


Q ss_pred             HHHHHHhcCCCCC-CCCcccccccch-hHHH-----HHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 014319          262 QAQDNIMNLPLAN-GWGEKHKLFVKW-KYFE-----AKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACE  334 (427)
Q Consensus       262 ~A~~~l~~~~~~~-~~~~k~~~~~~W-k~~~-----~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~  334 (427)
                      +|.+.+++..... .+.  ..++.+| ++++     |+|+||||+|..+.+   +++|||+|+||+.|...+++|.+.++
T Consensus       216 ~a~~~l~~~~~~~~~~~--~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~---~~k~Ge~Ia~L~~A~~~l~~a~~~~~  290 (361)
T cd09239         216 EALRALENWESNSKIIL--GKIQKEWRKLVQMKIAYYASIAHLHMGKQSEE---QQKMGERVAYYQLANDKLEEAIKNAK  290 (361)
T ss_pred             HHHHHHhcccccccccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998643210 001  1356789 6665     467999999999999   99999999999999999999998876


Q ss_pred             hcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCC--CCCCCCCCCccccccccCCC
Q 014319          335 AFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIM--ETAPTLPDFALALKPDEFQL  400 (427)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP--~~lp~l~~~~l~vkp~~f~l  400 (427)
                      ....      ...+.+.++.+.+.|. +.++++++|||||||++||  ++||+|+++.| |||+||+.
T Consensus       291 ~~~~------~~~~~~~~~~l~~~i~-~~l~~aekDNd~IYhe~VP~~~~L~~i~~~~~-vk~~p~~~  350 (361)
T cd09239         291 GQPD------TVNLQEALSFTMDVIG-GKRNSAKKENDFIYHEAVPKLDTLQAVKGANL-VKGIPFSP  350 (361)
T ss_pred             CCCc------chhHHHHHHHHHHHHH-HHHHHHhcccCceeecCCCChhhcCCCcCccc-cccCCCCc
Confidence            3211      1124455666677774 7899999999999999999  58999999999 99998875

This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l

>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains

Probab=100.00  E-value=1.6e-65  Score=516.87  Aligned_cols=325  Identities=22%  Similarity=0.281  Sum_probs=267.7

Q ss_pred             EEecCCCCCCCCcccchHHhhHHHHHHH--HHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHH
Q 014319           25 SVYVPGLRIPKPVDFSQSLGDNLSKNMV--ERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPV  102 (427)
Q Consensus        25 ~~~~p~lk~t~~vd~~~~l~~~I~~~~~--~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~  102 (427)
                      ++.|| ||+|.+|||..||++||.++|.  ++.+.++++|..+. ++|+.+..+.   .+.+     +..++.+.+||.+
T Consensus         3 ~l~ip-lK~t~~vd~~~~l~~~I~~~y~~~~~~~~~~~~l~~l~-~lR~~~~~~~---~~~~-----~~~~~~l~~Yy~q   72 (346)
T cd09240           3 FISVP-LKKSSEVDLVKPLEKFIKNTYSSGEEQADYKEAIKELN-KLRNNAVCRP---LDKH-----ESSLELLLRYYDQ   72 (346)
T ss_pred             eeecc-CcCCCcCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HHHHHhhcCC---CCcc-----hhHHHHHHHHHHH
Confidence            57899 9999999999999999999998  66666666665554 4444322111   0111     3346789999999


Q ss_pred             HhcccCCCCC--ccceeeEEeeeCCCC------CcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCH
Q 014319          103 LLGLVKDGSQ--LQYKVQFVWVNQEDE------AEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSE  174 (427)
Q Consensus       103 L~~l~~~~~~--~~~~v~F~W~dsl~~------~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~  174 (427)
                      |..+..+.+.  .+.+|.|+|+|+|+.      +.+++++|+.||++|||||||++++++|+.           +++.++
T Consensus        73 L~~l~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~~~~~~~~l~fEka~vlfNiaal~s~la~~-----------~~~~~~  141 (346)
T cd09240          73 LCAIEPKFPFSESQIQVTFTWKDAFDKGSLFGGSKKLALSSLGYEKVCVLFNIAALQSQIAAE-----------QNLDTD  141 (346)
T ss_pred             HHHHHhcCCCCcccccceeeeecccccccccCCCcccccccHHHHHHHHHHHHHHHHHHHHHH-----------cCCCCh
Confidence            9987543322  235899999999974      245789999999999999999999999982           567889


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHH
Q 014319          175 ESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLAC  254 (427)
Q Consensus       175 dglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~  254 (427)
                      ||+|+||++||+|||||+||++++++.++.    .+++||++++|.+|..+||||||||+|+||+. ++++++||||||.
T Consensus       142 eglK~A~~~fq~AAG~F~~l~e~~~~~~~~----~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai~-~~~k~~liAKLa~  216 (346)
T cd09240         142 EGLKLAAKLFQQAAGIFNHLKETVLSALQQ----EPTPDLSPDTLSALSALMLAQAQEVFYLKATR-DKMKDAIIAKLAA  216 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHH
Confidence            999999999999999999999998766432    23479999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcccccccch-hHHHH-----HHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHH
Q 014319          255 EMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEA-----KAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKE  328 (427)
Q Consensus       255 q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~-----kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~  328 (427)
                      |++++|++|.+.+++....      ..++.+| .++++     +|+||||+|+.+.+   +++|||+||||+.|.+.+++
T Consensus       217 qv~~~Y~~a~~~l~~~~~~------~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~~~~  287 (346)
T cd09240         217 QAADYYGDAFKQCQREDVR------SLLPKDWIPVLAGKQAYFHALAEYHQSLVAKA---QKKFGEEIARLQHALELIKT  287 (346)
T ss_pred             HHHHHHHHHHHHHhcchhc------cccCHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hchHHHHHHHHHHHHHHHHH
Confidence            9999999999999876531      1466789 66654     57999999999999   99999999999999999999


Q ss_pred             HHHHHhhcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCC
Q 014319          329 SKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ  399 (427)
Q Consensus       329 a~~~~~~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~  399 (427)
                      +.+.++.+.             .++.+.+.|. +.++++++||||||||+||+  +||+|++..| |||+||+
T Consensus       288 a~~~~~~~~-------------~~~~l~~~i~-~~l~~aekDNd~IY~e~VP~~~~L~~i~~~~~-vk~~p~~  345 (346)
T cd09240         288 AQSRAGEYV-------------DVKDFAAKIS-RALTAAKKDNDFIYHDRVPDVKSLPPIGKAAL-AKPTPVN  345 (346)
T ss_pred             HHHHhcchh-------------HHHHHHHHHH-HHHHHHhhccCeEeccCCCCchhccCCcCccc-ccCCCCC
Confidence            988654321             1456666775 78999999999999999996  8999999999 9999864

This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f

>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins

Probab=100.00  E-value=2e-65  Score=516.52  Aligned_cols=332  Identities=18%  Similarity=0.212  Sum_probs=272.0

Q ss_pred             EecCCCCCCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014319           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG  105 (427)
Q Consensus        26 ~~~p~lk~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~~  105 (427)
                      +.+| +|+|.+|||..||++||.++|.++...+++++..+. ++|+.++++.        . + +..++.+.+||.+|..
T Consensus         2 l~lp-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~-~lR~~~~~~~--------~-~-~~~~~~l~~Yy~qL~~   69 (348)
T cd09242           2 ISLP-LKDTEEVDWKKPLSSYLKRSYGSSTFYYEEEIAEFD-RLRQDANGVL--------A-D-ETGRDLLYKYYGQLEL   69 (348)
T ss_pred             CCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhcCCC--------C-C-HHHHHHHHHHHHHHHH
Confidence            5688 999999999999999999999777777777765554 4444444332        1 1 4446789999999987


Q ss_pred             ccCCCC--CccceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHH
Q 014319          106 LVKDGS--QLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI  183 (427)
Q Consensus       106 l~~~~~--~~~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~  183 (427)
                      +..+++  ....+|.|+|+|+|+++.+++++|+.||++|||||+|++|+++|+.           +++.+++|+|.||++
T Consensus        70 l~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~-----------~~~~~~~~~K~A~~~  138 (348)
T cd09242          70 LELRFPFNNKELKVDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGALLSQLAAE-----------KYREDEDDLKEAITN  138 (348)
T ss_pred             HHhhcCCCCccccceeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHHH-----------hccCChHHHHHHHHH
Confidence            643332  1235899999999996689999999999999999999999999983           456689999999999


Q ss_pred             HHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhcc---chhhHHHHHHHHHHHHH
Q 014319          184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTK---ATLAVKRRLACEMVKYW  260 (427)
Q Consensus       184 fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k---~k~sliAKLA~q~s~~Y  260 (427)
                      ||+|||||+||++++++ .|+       .||++++|.+|..+||||||||+|+||+. ++   ++++||||||.|++++|
T Consensus       139 fq~AAG~f~~l~e~~~~-~ps-------~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~-~~~~~~k~sliaKLa~~~~~~Y  209 (348)
T cd09242         139 LQQAAGCFQYINENFLH-APS-------VDLQQENVKFLVKLMLAQAQEIFLLKLIN-GDDAQKKASLISKLASATANLY  209 (348)
T ss_pred             HHHHHHHHHHHHHhcCC-CCC-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccchHHHHHHHHHHHHHH
Confidence            99999999999999754 233       79999999999999999999999999999 66   89999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 014319          261 QQAQDNIMNLPLANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACE  334 (427)
Q Consensus       261 ~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~  334 (427)
                      ++|.+.+++.....    +..++.+| .++     +|+|+||||+|.++.+   +++||++||||+.|.+.++++.+.++
T Consensus       210 ~~a~~~l~~~~~~~----~~~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~~~~~  282 (348)
T cd09242         210 ESCVEFLKEIQEKG----ISYGDPKWISLVQCKAHYYKSLAAYYHALALEA---AGKYGEAIAYLTQAESILKEANPQKL  282 (348)
T ss_pred             HHHHHHHhcccccc----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHH---hccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998744310    00245678 554     4577999999999999   99999999999999999999998876


Q ss_pred             hcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCC
Q 014319          335 AFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ  399 (427)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~  399 (427)
                      .+..+.. ...+.+.+.++.+.+.|+ +.++++++|||||||++||+  +||+|++..| |||+|++
T Consensus       283 ~~~~~~~-~~~~~~~~~~~~~~~~v~-~~l~~aekDNd~IY~~~VP~~~~L~~i~~~~~-vk~~p~~  346 (348)
T cd09242         283 SLKASAG-DAAYALNDDFKGQKDTVE-EKLKELEKDNDFIYHDIVPSEVTLPSIKPLDA-AKPIPIE  346 (348)
T ss_pred             cCCCccc-cchhHHHHHHHHHHHHHH-HHHHHHhcccCeeccCCCCCccccCCCCcccc-CCCCCCc
Confidence            5432211 112236667778888885 78999999999999999996  8999999999 9999753

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the

>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins

Probab=100.00  E-value=3.2e-65  Score=516.45  Aligned_cols=321  Identities=20%  Similarity=0.271  Sum_probs=272.7

Q ss_pred             EEecCCCCCCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014319           25 SVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL  104 (427)
Q Consensus        25 ~~~~p~lk~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~  104 (427)
                      +|.|| +|+|.+|||..||++||.++|.++.+.++++|..+. ++|+.++++.     .+     +..++.+.+||.+|.
T Consensus         2 ~l~ip-~K~t~~vd~~~~l~~~I~~~y~~~~~~~~~dl~~l~-~lR~~~~~~~-----~~-----~~~~~~l~~Yy~~L~   69 (355)
T cd09241           2 LLSIP-FKRTLPVDLKDALRNYISNHYFQTPSSFEDDLAEID-KLRNDAINPE-----PS-----VNGLSLLKEYYAQLV   69 (355)
T ss_pred             cCccC-CCcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHhhCCC-----CC-----hhHHHHHHHHHHHHH
Confidence            47899 999999999999999999999887777777776654 5555544332     11     344678999999999


Q ss_pred             cccCCCCCccceeeEEeeeCCCCC--cceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHH
Q 014319          105 GLVKDGSQLQYKVQFVWVNQEDEA--EETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVD  182 (427)
Q Consensus       105 ~l~~~~~~~~~~v~F~W~dsl~~~--~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~  182 (427)
                      .+..+.+  ..+|.|+|+|+|+++  .+++++|+.||++|||||+|++|+++|++           +++.+++|+|+||+
T Consensus        70 ~l~~rfp--~~~i~F~W~d~~~~~~~~~~~~~~l~fEka~VLfNigal~sq~a~~-----------~~~~~~~glK~A~~  136 (355)
T cd09241          70 VLSKKFP--DDQLEFTWYPTLGYKSSGPVSLSSLKFERANILYNLGALYSQLALS-----------ENRYTDEGLKRACS  136 (355)
T ss_pred             HHHhcCC--CcCCceeeecccCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHH-----------cCCCChHHHHHHHH
Confidence            9876554  568999999999874  68999999999999999999999999982           56778999999999


Q ss_pred             HHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHH
Q 014319          183 IFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQ  262 (427)
Q Consensus       183 ~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~Y~~  262 (427)
                      +||+|||||+||++++++.+      .++.||++++|.+|..+||||||||+|+||+. +++++++|||||.|++.+|++
T Consensus       137 ~fq~AAG~F~~l~~~~~~~~------~~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~-~~~k~sliAKLa~qv~~~Y~~  209 (355)
T cd09241         137 YFQASAGCFEYILQHLLPTL------SPPPDLDENTLKALESLMLAQAQECFWQKAIS-DGTKDSLIAKLAAQVSDYYQE  209 (355)
T ss_pred             HHHHHHHHHHHHHHhccccc------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHH
Confidence            99999999999999987664      12389999999999999999999999999999 888999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014319          263 AQDNIMNLPLANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAF  336 (427)
Q Consensus       263 A~~~l~~~~~~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~  336 (427)
                      |.+.++..+.         +..+| .++     +|+|+||||+|..+.+   +++||++||||+.|.+.++++.+.++..
T Consensus       210 a~~~l~~~~~---------i~~~W~~~v~~K~~~f~A~A~y~~a~~~~e---~~k~Ge~Ia~L~~A~~~l~~a~~~~~~~  277 (355)
T cd09241         210 ALKYANKSDL---------IRSDWINHLKVKKHHFKAAAHYRMALVALE---KSKYGEEVARLRVALAACKEALKEARYG  277 (355)
T ss_pred             HHHHHhcCCc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999985443         45567 444     5578999999999999   9999999999999999999999887633


Q ss_pred             ccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCC
Q 014319          337 NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ  399 (427)
Q Consensus       337 ~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~  399 (427)
                              .+.+.+.++.+.+.|+ +.++++++|||+||||+||+  +||+|++..| |||+|++
T Consensus       278 --------~~~~~~~~~~l~~~i~-~~l~~aekdNd~IY~e~VP~~~~L~~i~~~~~-vk~~~~~  332 (355)
T cd09241         278 --------NKAVLEDLQGLKDIVK-ESLKRAERDNDLIYLQPVPPASELPPIKPASM-VKAIVPP  332 (355)
T ss_pred             --------chhHHHHHHHHHHHHH-HHHHHHhhccCeeCCcCCCCcccCCCCCCccc-ccccCch
Confidence                    1223344556667775 78999999999999999996  8999999999 9999764

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp

>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains

Probab=100.00  E-value=1.3e-60  Score=477.97  Aligned_cols=307  Identities=18%  Similarity=0.195  Sum_probs=259.3

Q ss_pred             EecCCCCCCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014319           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG  105 (427)
Q Consensus        26 ~~~p~lk~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~~  105 (427)
                      |.+| ||+|++|||..||++||.++|.++.+.+.++|.++. ++|+.++++.|   +       +..++.|.+||.+|..
T Consensus         2 i~l~-lK~T~~vd~~~~L~~yI~~~Y~e~~~~y~~~l~~l~-~LR~~~~~~~~---~-------~~g~~~L~~YY~qL~~   69 (350)
T cd09244           2 IPLG-LKETKEIDFMEPFKDFILEHYSEDPSLYEDEIADFT-DLRQAMRTPSR---D-------EAGIELLFEYYNQLYF   69 (350)
T ss_pred             CCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhhCCCC---C-------hhHHHHHHHHHHHHHH
Confidence            4577 999999999999999999999998899999887766 78888777764   1       2335678899999987


Q ss_pred             ccCCCCCc--cceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHH
Q 014319          106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI  183 (427)
Q Consensus       106 l~~~~~~~--~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~  183 (427)
                      +-.+++..  ..+|.|+|+|+|++ .+++++++.|||+|||||||++|+++|+.           ++|.+++|+|+||++
T Consensus        70 le~RFp~~~~~~~v~F~W~Ds~~~-~~~~q~sl~fEkasVLFNigAl~Sq~aa~-----------~~r~~~eglK~A~~~  137 (350)
T cd09244          70 VERRFFPPDRSLGIYFHWYDSLTG-VPSVQRSVAFEKASVLFNIGALYTQIGAK-----------QDRTTEEGIEAAVDA  137 (350)
T ss_pred             HHhcCCCccccccceeeeecccCC-CccccccHHHHHHHHHHHHHHHHHHHHHH-----------hccCChHHHHHHHHH
Confidence            64333221  25899999999987 79999999999999999999999999982           678899999999999


Q ss_pred             HHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhcc-chhhH-----HHHHHHHHH
Q 014319          184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTK-ATLAV-----KRRLACEMV  257 (427)
Q Consensus       184 fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k-~k~sl-----iAKLA~q~s  257 (427)
                      ||+|||+|+||++++. +.|+       .||++++|++|..|||||||||+|+||+. ++ +|+++     |||||.|++
T Consensus       138 Fq~AAG~F~~l~e~~~-~~ps-------~Dls~~~L~~L~~LmLAQAQEc~~~Kai~-d~~~k~~~~~~~~lAklA~qv~  208 (350)
T cd09244         138 FQRAAGAFNYLRENFS-NAPS-------MDLSPEMLEALIKLMLAQAQECVFEKLVL-PGEDSKDIQACLDLAQEAAQVS  208 (350)
T ss_pred             HHHHHHHHHHHHHhcc-CCCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHh-ccccccchhHHHHHHHHHHHHH
Confidence            9999999999999964 3444       79999999999999999999999999998 55 77888     999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCcccccccch-hHHHH-----HHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 014319          258 KYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEA-----KAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKK  331 (427)
Q Consensus       258 ~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~-----kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~  331 (427)
                      ++|++|.+.+++.....      .++.+| .++++     +|+||||+|+.+.+   .+++|++|++|+.|..+.++|.+
T Consensus       209 ~~Y~~a~~~~~~~~~~~------~i~~~W~~~v~~K~~~f~AlA~y~~a~~l~~---~~~~g~~~a~L~~A~~~~e~a~~  279 (350)
T cd09244         209 DCYSEVHKLMNQEPVKD------YIPYSWISLVEVKSEHYKALAHYYAAMGLLL---EERRLLGKAHLKEALLLHEEALR  279 (350)
T ss_pred             HHHHHHHHHHhcccccc------ccCHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998644321      466789 66654     67999999999999   99999999999999999999999


Q ss_pred             H---HhhcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC
Q 014319          332 A---CEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME  381 (427)
Q Consensus       332 ~---~~~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~  381 (427)
                      .   |+.+..      ...+.+.++..++++. ..++..+++|||+||+.||+
T Consensus       280 ~~~~c~~~~~------~~~l~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~~p~  325 (350)
T cd09244         280 LHRMCRFLRN------VDSLQEVLKEAHDRSL-NKYSSLEEEDDFSDALDAPD  325 (350)
T ss_pred             HHHHHhhhcc------hHHHHHHHHHHHHHHH-HHHHhhccccchhhccccCC
Confidence            4   665542      3346677777777775 67888899999999988876

This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac

>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains

Probab=100.00  E-value=1.1e-59  Score=474.59  Aligned_cols=334  Identities=37%  Similarity=0.539  Sum_probs=267.1

Q ss_pred             EecCCCCCCCCcccchHHhhHHHHHHHH-HHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014319           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVE-RLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL  104 (427)
Q Consensus        26 ~~~p~lk~t~~vd~~~~l~~~I~~~~~~-~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~  104 (427)
                      +.+| ||+|.+|||..+|+++|.++|.+ +-..++++|..+. ++|+.+.+..    .+  .++.+.+++.|.+||++|.
T Consensus         2 i~~p-lk~t~~vd~~~~l~~~i~~~~~~~~~~~~~~~l~~~~-~lR~~~~~~~----~~--~~~~~~~~~~l~~Y~~~L~   73 (345)
T cd09034           2 IGLP-LKKTKEVDVKVPLSKFIPKNYGELEATAVEDLIEKLS-KLRNNIVTEQ----NN--DTTCENLLEALKEYLPYLL   73 (345)
T ss_pred             CCCC-CCCCceeeechhhHHHhhHhhCcccchhhHHHHHHHH-HHHHHHHhhc----cC--CcchHHHHHHHHHHHHHHH
Confidence            4678 99999999999999999998854 3333333333222 2222222221    22  1145778899999999999


Q ss_pred             cccCCCC--CccceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC-HHHHHHHH
Q 014319          105 GLVKDGS--QLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVS-EESRRASV  181 (427)
Q Consensus       105 ~l~~~~~--~~~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t-~dglK~A~  181 (427)
                      ++..+.+  ..+.+|.|+|+|+|+.+.++.. |+.||++|||||+|++|+++|+.           .++.+ ++|+|.|+
T Consensus        74 ~l~~~~~~~~~~~~i~F~W~d~~~~~~~~~~-~l~fE~~~vLfn~aa~~s~~a~~-----------~~~~~~~~~~k~A~  141 (345)
T cd09034          74 GLEKKLPFQKLRDNVEFTWTDSFDTKKESAT-SLRYELLSILFNLAALASQLANE-----------KLITGSEEDLKQAI  141 (345)
T ss_pred             HHHhcCCcccccccceeEeecccCCCcchhh-hHHHHHHHHHHHHHHHHHHHHHh-----------ccCCCchHHHHHHH
Confidence            9875543  4457899999999997665555 99999999999999999999983           34445 79999999


Q ss_pred             HHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhcc-chhhHHHHHHHHHHHHH
Q 014319          182 DIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTK-ATLAVKRRLACEMVKYW  260 (427)
Q Consensus       182 ~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k-~k~sliAKLA~q~s~~Y  260 (427)
                      ++||+|||+|+||++++.+..+.    .+|+||++++|.+|..+||||||||+|+||+. ++ +++++|||||.|++++|
T Consensus       142 ~~fq~AAG~F~~l~~~~~~~~~~----~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~-~~~~~~~liakLa~~~~~~y  216 (345)
T cd09034         142 KSLQKAAGYFEYLKEHVLPLPPD----ELPVDLTEAVLSALSLIMLAQAQECFLLKAEE-DKKAKLSLLARLACEAAKYY  216 (345)
T ss_pred             HHHHHHHHHHHHHHHhccccCCC----CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh-cccCcHHHHHHHHHHHHHHH
Confidence            99999999999999998765432    25589999999999999999999999999999 66 89999999999999999


Q ss_pred             HHHHHHHhcCCCC--CCCCcccccccchhHHHHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014319          261 QQAQDNIMNLPLA--NGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNV  338 (427)
Q Consensus       261 ~~A~~~l~~~~~~--~~~~~k~~~~~~Wk~~~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~  338 (427)
                      ++|.+.+++.+..  +.+..+|..+..||...++|+||||+|.++.+   .++||++|+||+.|...++++.+.++.+..
T Consensus       217 ~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e---~~~~G~aia~L~~A~~~~~~~~~~~~~~~~  293 (345)
T cd09034         217 EEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDE---ANKIGEAIARLQAALELLKESERLCKSFLL  293 (345)
T ss_pred             HHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999976542  22222222223334445688999999999999   899999999999999999999998775431


Q ss_pred             CCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCcccccccc
Q 014319          339 APPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDE  397 (427)
Q Consensus       339 ~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~  397 (427)
                              .+++.++.+.++|+ +.++++++|||+||||+||+  +||++++..+ |+|.|
T Consensus       294 --------~~~~~~~~l~~~i~-~~l~~~~kdNd~Iy~e~VP~~~~Lp~i~~~~~-v~~~p  344 (345)
T cd09034         294 --------DVWGNLKKLKEKIE-KELEKAERENDFIYFEEVPPEDPLPEIKGALL-VKPPP  344 (345)
T ss_pred             --------hHHHHHHHHHHHHH-HHHHHHHhhhhHhhcccCCCCCCCCccccccc-cCCCC
Confidence                    35667888888886 68999999999999999997  4999999999 88775

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to

>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome

Probab=100.00  E-value=3.1e-58  Score=469.21  Aligned_cols=329  Identities=23%  Similarity=0.296  Sum_probs=246.4

Q ss_pred             EEecCCCCCCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014319           25 SVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL  104 (427)
Q Consensus        25 ~~~~p~lk~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~  104 (427)
                      ++.+| ||+|++|||..+|++||.++|.++...+++++..+. ++|+.++++.         ...+..++.+.+||++|.
T Consensus         2 ~~~lp-lK~t~~vd~~~~l~~~i~~~y~~~~~~~~~~l~~l~-~lR~~~~~~~---------~~~~~~~~~l~~Y~~~L~   70 (377)
T PF03097_consen    2 MLSLP-LKKTKEVDLKKPLKKYISSHYGEDPDSFDEDLKELD-KLRQDARNPQ---------SPSESGLKLLEEYYPQLE   70 (377)
T ss_dssp             ---------BEEE-CHHHHHHHHHHHCSSCCHCCHHHHHHHH-HHHHHHHTSS----------SSHHHHHHHHHHHHHHH
T ss_pred             cCCCC-CCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHHhccC---------CCchhHHHHHHHHHHHHH
Confidence            46678 999999999999999999988443333333332222 1111111110         122566889999999999


Q ss_pred             cccCCCCCccceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHHH
Q 014319          105 GLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIF  184 (427)
Q Consensus       105 ~l~~~~~~~~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~f  184 (427)
                      .+..+.+....+|.|+|+|+|+++.+++++++.||++|||||+|++|+++|+.           .++.+++++|.|+++|
T Consensus        71 ~l~~~~p~~~~~i~F~W~d~~~~~~~~~~~~~~fE~a~vL~N~aa~~s~~a~~-----------~~~~~~~~~k~A~~~f  139 (377)
T PF03097_consen   71 SLEKRFPSDQIQISFTWSDSLSTGKPVSQSSLAFEKACVLFNIAALYSQLAAS-----------QNRSTDEGLKEACNYF  139 (377)
T ss_dssp             HHCCCSCSSCCTT-EEEE-TTSTTSEEEESSHHHHHHHHHHHHHHHHHHHHHH-----------S-TTSHHHHHHHHHHH
T ss_pred             HHHHhcccccceeeEeeeccccCCCcccchhhHHHHHHHHHHHHHHHHHHHHh-----------cccccchhHHHHHHHH
Confidence            98755543334699999999976689999999999999999999999999983           4556899999999999


Q ss_pred             HHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHHHHH
Q 014319          185 LKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQ  264 (427)
Q Consensus       185 q~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~Y~~A~  264 (427)
                      |+|||+|+||++++ ...++       .||++++|.+|..+||||||||+|+||+. +++++++|||||.+++++|++|.
T Consensus       140 q~AAg~f~~l~~~~-~~~~s-------~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~-~~~~~~liAKLa~~~~~~Y~~a~  210 (377)
T PF03097_consen  140 QRAAGIFQYLRENF-KDSPS-------PDLSPEVLSALSNLMLAQAQECFYEKAIA-DKKKPSLIAKLAAQASELYDEAH  210 (377)
T ss_dssp             HHHHHHHHHHHHHS-SS-SS-------GGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TTG-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-cccCC-------CcCCHHHHHHHHHHHHHHHHHHHHHHHHH-ccCchHHHHHHHHHHHHHHHHHH
Confidence            99999999999994 33333       69999999999999999999999999999 89999999999999999999999


Q ss_pred             HHHhcCCCCCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 014319          265 DNIMNLPLANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEAFNV  338 (427)
Q Consensus       265 ~~l~~~~~~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~  338 (427)
                      +.+++.....      .++..| .++     .++|+||||+|..+.+   +++||++|+||+.|...++++.+.++.+  
T Consensus       211 ~~l~~~~~~~------~~~~~w~~~~~~K~~~~~A~A~y~~A~~~~~---~~~~G~aia~L~~A~~~l~~a~~~~~~~--  279 (377)
T PF03097_consen  211 EALQSSPLSE------SIPKDWRSYVQVKSAYYRALAHYHQALAAEE---AKKYGEAIARLRRAEEALKEASKLAKKC--  279 (377)
T ss_dssp             HHHTTCHHHH------CSHCCHHHHHHHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHHHHHCCCH--
T ss_pred             HHHhcccccc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhcccHHHHHHHHHHHHHHHHHhhhhcc--
Confidence            9999876422      245567 444     4578999999999999   9999999999999999999999987643  


Q ss_pred             CCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCCCC
Q 014319          339 APPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQLP  401 (427)
Q Consensus       339 ~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~lP  401 (427)
                          ...+.+.+.++.+.+.+. ..++++++|||+|||++||+  +||++++..+ |||+|++-+
T Consensus       280 ----~~~~~~~~~~~~l~~~i~-~~l~~~~kdNd~Iy~e~VP~~~~L~~~~~~~~-vk~~~~~~~  338 (377)
T PF03097_consen  280 ----SKSSSLQDDLKSLLDQIQ-EKLEKAEKDNDFIYHEPVPSESELPPIKPASM-VKPIPPPEF  338 (377)
T ss_dssp             ----SCCSTTTHHHHHHHHHHH-HHHHHHHHHHHHTT--S--SCGGSGGS-SSST-T----HHCC
T ss_pred             ----cchHHHHHHHHHHHHHHH-HHHHHHHhcccccccccCCCcccccccccccc-cCCCCCccc
Confidence                123346667788888886 67888999999999999997  5889999999 999976644

The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....

>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1

Probab=100.00  E-value=1.4e-54  Score=434.85  Aligned_cols=308  Identities=15%  Similarity=0.133  Sum_probs=243.9

Q ss_pred             EecCCCCCCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014319           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG  105 (427)
Q Consensus        26 ~~~p~lk~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~~  105 (427)
                      |.+| ||+|++|||..||++||.++|.++.+.++++|..+. ++|+.++++.+     +     +..++.|.+||.+|..
T Consensus         2 i~lp-lK~T~~vDl~~pL~~yI~~~Y~q~~~~y~~dl~~l~-~LR~~~~~~~~-----~-----~sgle~L~~YY~qL~~   69 (384)
T cd09248           2 IPLG-LKETKELDLPTPLKELISEHFGEDGTSYEAEIRELE-DLRQAMRTPSR-----S-----EAGLELLMAYYNQLCF   69 (384)
T ss_pred             CCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhcCCCC-----C-----hhHHHHHHHHHHHHHH
Confidence            5678 999999999999999999999988888888887665 67766655542     1     3345678999999998


Q ss_pred             ccCCCCCc--cceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHH
Q 014319          106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI  183 (427)
Q Consensus       106 l~~~~~~~--~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~  183 (427)
                      +..+++..  ..+|.|+|+|+|++ .+++++|+.|||+||||||||+||++|+           .++|.++||+|.||++
T Consensus        70 Le~RFp~~~~~~~v~FtW~Daf~~-~~~~q~sl~FEKasVLFNigAL~Sqlaa-----------~~~r~t~eGlK~A~~~  137 (384)
T cd09248          70 LDARFFPPAKSLGLFFHWYDSLTG-VPAQQRALAFEKGSVLFNIGALHTQIGA-----------RQDRSCTEGTRRAIDA  137 (384)
T ss_pred             HHhcCCCCcccccceeeeeccCCC-CccccccHHHHHHHHHHhHHHHHHHHHh-----------hccCCChHHHHHHHHH
Confidence            75443221  25799999999987 6899999999999999999999999998           3688999999999999


Q ss_pred             HHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhh-------hhccchhhHHHHHHHHH
Q 014319          184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI-------DSTKATLAVKRRLACEM  256 (427)
Q Consensus       184 fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi-------~~~k~k~sliAKLA~q~  256 (427)
                      ||+|||||+||++++. +.|+       .||++++|.+|..|||||||||+|+|++       . +++++++|||||.|+
T Consensus       138 FQ~AAG~F~~L~e~~~-~~Ps-------~Dms~~~L~~L~~LMLAQAQEC~~eKail~~~~~~~-d~~k~~~iAKlAaQv  208 (384)
T cd09248         138 FQRAAGAFSLLRENFS-NAPS-------PDMSTASLSMLEQLMVAQAQECIFEGLLLPLLATPQ-DFFAQLQLAQEAAQV  208 (384)
T ss_pred             HHHHHHHHHHHHHHhc-cCCC-------CcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccchhhHHHHHHHHH
Confidence            9999999999999954 3344       7999999999999999999999999999       4 788999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCcccccccch-hHHH-----HHHHHHHHHhhhhccCC-----------------------
Q 014319          257 VKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFE-----AKAAAYYYHGLILDEGN-----------------------  307 (427)
Q Consensus       257 s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~-----~kA~A~y~~a~~~~~~~-----------------------  307 (427)
                      +++|++|++.+++....      ..++..| .+++     |+|+||||+|+.+.+..                       
T Consensus       209 s~~Y~~a~~~~~~~~~~------~~i~~~W~~~v~~K~~hF~AlA~y~~A~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  282 (384)
T cd09248         209 AAEYRLVHRTMAQPPVR------DYVPFSWTALVHVKAEHFCALAHYHAAMALCDSSPASEGELATQEKAFLQPHTSQPE  282 (384)
T ss_pred             HHHHHHHHHHHhccccc------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHhccCCCCCCC
Confidence            99999999999865542      1466789 5554     56799999999966411                       


Q ss_pred             ---------cchhHHHHHHHHHHHHHHHHHHHHHHh---hcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCcee
Q 014319          308 ---------TEKFHGMAVAALQAADEYFKESKKACE---AFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYS  375 (427)
Q Consensus       308 ---------~~~k~GeaIa~L~~A~~~l~~a~~~~~---~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IY  375 (427)
                               +..+.|+  ++|+.|....++|.++.+   ...      ....+.+.++..+++.. ..+...+++|||+|
T Consensus       283 ~~~~~~~~~~~~~~~~--ahl~~a~~~~eea~r~~~~c~~l~------~~~~l~~~l~~~~~~s~-~~~~~~~~~~d~~~  353 (384)
T cd09248         283 GPSLPQEPEERRKLGK--AHLKRAILGQEEALRLHALCRILR------KVDLLQAVLTQALRRSL-AKYSELDREDDFFE  353 (384)
T ss_pred             ccccccChHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHH-HHHhhhccccchhh
Confidence                     1256676  899999999999988744   211      11123344444444432 45666788888987


Q ss_pred             eccCCC
Q 014319          376 YEKIME  381 (427)
Q Consensus       376 he~VP~  381 (427)
                      ...-|+
T Consensus       354 ~~~~~~  359 (384)
T cd09248         354 TGEAPD  359 (384)
T ss_pred             ccccCc
Confidence            776564

This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i

>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=100.00  E-value=5.4e-54  Score=433.04  Aligned_cols=273  Identities=18%  Similarity=0.253  Sum_probs=228.2

Q ss_pred             HHHHHHHHHHHHHhcccCCC--CCccceeeEEeeeCCCC---CcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 014319           91 DLHQALEDYLPVLLGLVKDG--SQLQYKVQFVWVNQEDE---AEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSA  165 (427)
Q Consensus        91 ~l~~~l~~Y~~~L~~l~~~~--~~~~~~v~F~W~dsl~~---~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~  165 (427)
                      +.+.+|..|++.|.++..+.  .+++..+.|+|+|+|++   ...+++.++.||++|||||+|++++++|...       
T Consensus        58 ~yl~~L~~~~~~L~~~~~~~~~~~l~~~i~F~W~~~l~~~~~~~~~~~~sl~fE~~~vLfn~aa~~s~~A~~~-------  130 (346)
T cd09247          58 QYLPYLEGYLPALENLVNHRDKVQLNEQLSFRWTSGLGSSKGPKAFQSDSLRFELGMVLFLYGAALRERASEV-------  130 (346)
T ss_pred             hHHHHHHHHHHhhccCCccchHHhhcccCceeeecccCCCCCCceeeccchHHHHHHHHHHHHHHHHHHHHHh-------
Confidence            35678888888888887553  24678999999999987   3457888999999999999999998888721       


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhhHHHHHHhccCCCCCccc-cCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccc
Q 014319          166 DGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPEL-RRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKA  244 (427)
Q Consensus       166 ~~~~~~~t~dglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~-~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~  244 (427)
                            ...|++|.||++||+|||||+||++++++.+++.+ ...+|+||+++++.+|+.|||||||||+|+||+. +++
T Consensus       131 ------~~~e~~K~A~~~l~~AAG~f~~l~~~~l~~~~~~~s~~~~~~Dl~~~~~~aL~~l~LAqAQe~~~~KAi~-~~~  203 (346)
T cd09247         131 ------LPTEDFKEAATHLRRAAGVFEFLAHDELPRLRGALSADERPPECTPSLALAMSLLCLAEAQAVTARKAEE-KGT  203 (346)
T ss_pred             ------ccHHHHHHHHHHHHHHHHHHHHHHhccccccccCcccCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence                  12379999999999999999999999988765543 3566789999999999999999999999999999 889


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhHHHHHH
Q 014319          245 TLAVKRRLACEMVKYWQQAQDNIMNLPL-ANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFHGMAVA  317 (427)
Q Consensus       245 k~sliAKLA~q~s~~Y~~A~~~l~~~~~-~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~GeaIa  317 (427)
                      +++||||||+|++++|++|.+.+++... ..      .+..+| +++     .++|+||||+|.++.+   +++||++|+
T Consensus       204 ~~sliAKLa~~~~~~y~~A~~~l~~~~~~~~------~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~---~~k~GeaIa  274 (346)
T cd09247         204 SPSLLAKLHYGATQFLEEAKNVLRSLATDLK------DLDPRFLRFISSCIALHEARSQLYLARRLKE---AGHIGVAVG  274 (346)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHccCcchh------hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCchHHHH
Confidence            9999999999999999999999987542 11      134456 444     4578999999999999   999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCcccccc
Q 014319          318 ALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKP  395 (427)
Q Consensus       318 ~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp  395 (427)
                      +|+.|.+.++++.+.++.+           ....++.+.+.|+ ..++++++||||||||+||+  +||++++..| |||
T Consensus       275 ~L~~A~~~l~~~~~~~~~~-----------~~~~~~~~~~~i~-~~l~~a~kdNd~IY~e~VP~~~~L~~~~~~~~-vk~  341 (346)
T cd09247         275 VLREALRNLKKKLPGSDIS-----------SPVIFRDERAEVA-TLLQKYEKENEVIYFEKVPDIDELPLPEGKVI-VKP  341 (346)
T ss_pred             HHHHHHHHHHHhhccCchh-----------HHHHHHHHHHHHH-HHHHHHHhccCeEEeecCCCccccCCCccccc-eee
Confidence            9999999998888654311           1234556667774 68999999999999999995  6999999999 999


Q ss_pred             ccCC
Q 014319          396 DEFQ  399 (427)
Q Consensus       396 ~~f~  399 (427)
                      +||.
T Consensus       342 ip~~  345 (346)
T cd09247         342 VPYK  345 (346)
T ss_pred             cCCC
Confidence            9986

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in

>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains

Probab=100.00  E-value=1.5e-52  Score=429.41  Aligned_cols=356  Identities=20%  Similarity=0.205  Sum_probs=259.4

Q ss_pred             CCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhcccCCCC-
Q 014319           33 IPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGS-  111 (427)
Q Consensus        33 ~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~~l~~~~~-  111 (427)
                      -|..|.|..-+.+-=-..++.+.+..|..+....   -...|++.    ... .+++..++++|++||++|.+|..+.+ 
T Consensus         8 tTs~~sF~~~~~~~~~~~l~~~a~~~R~~lr~~l---k~~k~~~~----~~~-~~~~~~~~~aL~~Ylp~L~~l~~~~~~   79 (413)
T cd09245           8 TTSSISFSDFFNSDSYPSLPLNATTARAVLRAAL---KAHKRTPP----GSQ-ASNLLTVVKALEEYLPYLLAIDACLSH   79 (413)
T ss_pred             CCcccchhhhcCCCcccchhhHHHHHHHHHHHHH---HhcccCCc----ccc-cccHHHHHHHHHHHHHHHHHHHccCCc
Confidence            5667888744444111246888999898876554   22223332    222 46678899999999999999864432 


Q ss_pred             ---CccceeeEEeeeCCCCCc-----ceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC------CCCCCCHHHH
Q 014319          112 ---QLQYKVQFVWVNQEDEAE-----ETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADG------YQPKVSEESR  177 (427)
Q Consensus       112 ---~~~~~v~F~W~dsl~~~~-----~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~------~~~~~t~dgl  177 (427)
                         +++..|.|+|+|+|+++.     .+++++++||++|||||||++|+++|.+.+.+.....+      ...+.+++++
T Consensus        80 ~~~~l~~~i~F~W~~tl~~~~~~~~~~~~~~sl~fE~a~VLfnla~l~S~~A~~~l~~~~~~~~~~~is~~~~~~~~e~l  159 (413)
T cd09245          80 DELILKSEPTFEWRTTLSSTSGRESPRLPLPGLHYELAFVLLTYAYALSNLARSILAPLGAYETDRSISDASRKQRDERL  159 (413)
T ss_pred             chhcccccceeEeecccccCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHH
Confidence               445689999999997653     48999999999999999999999999975433211000      1236789999


Q ss_pred             HHHHHHHHHHhhHHHHHHhccCCCCCccc-cCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhh------c--------
Q 014319          178 RASVDIFLKAAGYLDCAVRHVLPQMSPEL-RRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDS------T--------  242 (427)
Q Consensus       178 K~A~~~fq~AAG~F~~l~e~~~~~~~~~~-~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~------~--------  242 (427)
                      |.|+++||+|||||+||++++++.+++.. ...+|+||+++++.+|+.|||||||||+|+|++..      +        
T Consensus       160 K~A~~~l~~AAGvf~~L~~~~l~~~~~~~~~~~~~~DLs~~~l~aL~~L~LAqAQel~~~K~~~~~~~~d~~~~~~ap~~  239 (413)
T cd09245         160 KAATKLLCKAAGIFDYLATRVLPQWESNRGGAPPPPDLSPEVLSALSSLALAEATLLAVRKLDPYPAAVDKDWMTPGPPL  239 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhcccCccc
Confidence            99999999999999999999988765422 23556899999999999999999999999998751      1        


Q ss_pred             -cc--hhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccch-hHHH-----HHHHHHHHHhhhhccCCcchhHH
Q 014319          243 -KA--TLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFE-----AKAAAYYYHGLILDEGNTEKFHG  313 (427)
Q Consensus       243 -k~--k~sliAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~-----~kA~A~y~~a~~~~~~~~~~k~G  313 (427)
                       ++  +++||||||.+++++|++|.+.+++.+....+   ..+..+| +|+.     ++|+||||+|+++.+   +++||
T Consensus       240 ~k~~~s~sLiAKLa~~~~~~y~~A~~~l~~~~~~~~~---~~i~~~~~~yl~~k~~~~~A~A~~~~g~d~~e---~~k~G  313 (413)
T cd09245         240 PKVHPSAHLLARLCLAASEHAESARALLSTPGSKRGS---GEVSEELLRYLSDLRRVARALACKFLGIDAGE---NGKVG  313 (413)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccc---ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHh---cCCHH
Confidence             22  56999999999999999999999876542111   1244566 5554     578999999999999   99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCC-CC-------CCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CC
Q 014319          314 MAVAALQAADEYFKESKKACEAFNVAP-PL-------SRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TA  383 (427)
Q Consensus       314 eaIa~L~~A~~~l~~a~~~~~~~~~~~-~~-------~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~l  383 (427)
                      |+|++|+.|...++++......-.... ++       ......++.++...+.|+ ..+++++++||+||||+||+  +|
T Consensus       314 eaIa~L~~A~~~L~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~e~~~i~-~~l~~~~K~ND~Iy~q~VP~~~~L  392 (413)
T cd09245         314 EAIGWLRAAKKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLE-MLLKKYKKMNDTVSFQPVPPSSEL  392 (413)
T ss_pred             HHHHHHHHHHHHHHHhhhccccccccccchhhhhhhhhhhchhhhhHHHHHHHHH-HHHHHHHHhcceeeeecCCChHhh
Confidence            999999999999888775321000000 00       000111123445555664 68899999999999999996  44


Q ss_pred             -CCCCCCccccccccCCCCCC
Q 014319          384 -PTLPDFALALKPDEFQLPPV  403 (427)
Q Consensus       384 -p~l~~~~l~vkp~~f~lP~~  403 (427)
                       ..+|.+.-+++|+||..|.+
T Consensus       393 ~~~~P~Gr~i~~~~~~~~p~~  413 (413)
T cd09245         393 QSSMPSGREAHTAKPYTPPPS  413 (413)
T ss_pred             hhcCCCcccccCCCCCCCCCC
Confidence             56775444499999998853

This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop

>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2

Probab=100.00  E-value=1.2e-50  Score=406.08  Aligned_cols=241  Identities=18%  Similarity=0.188  Sum_probs=202.9

Q ss_pred             EecCCCCCCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014319           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG  105 (427)
Q Consensus        26 ~~~p~lk~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~~  105 (427)
                      +.+| ||+|++|||+.||++||.++|.++.+.++++|..+. ++|+.++++.+.          +..++.|.+||.+|..
T Consensus         2 i~lp-lK~T~~VD~~~pL~~yI~~~Y~q~~~~y~~dl~~l~-~LR~~~~~~~~~----------~sg~e~L~~YY~qL~~   69 (385)
T cd09249           2 IPLG-LKETKDVDFSVPLKDFILEHYSEDGSEYEDEIADLM-DLRQACRTPSRD----------EAGVELLMSYFSQLGF   69 (385)
T ss_pred             CCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhcCCCCC----------hhHHHHHHHHHHHHHH
Confidence            4567 999999999999999999999988888888887665 667666555421          2335678899999998


Q ss_pred             ccCCCCCc--cceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHHHH
Q 014319          106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI  183 (427)
Q Consensus       106 l~~~~~~~--~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~~~  183 (427)
                      +..+++..  ..+|.|+|+|+|++ .+++++|+.||++|||||||++|+++|+           .+++.+++|+|.||++
T Consensus        70 Le~RFp~~~~~~~v~FtW~Dsf~~-~~~~q~sl~fEkasVLFNigAl~Sqlaa-----------~~~r~t~eGlK~A~~~  137 (385)
T cd09249          70 LENRFFPPTRQMGILFTWYDSFTG-VPVSQQNLLLEKASILFNIGALYTQIGT-----------RCNRQTQAGLESAVDA  137 (385)
T ss_pred             HHhhCCCCcccccceeeeeccCCC-CccccccHHHHHHHHHHhHHHHHHHHHH-----------HhccCCchhHHHHHHH
Confidence            65443221  25789999999986 7899999999999999999999999998           2678899999999999


Q ss_pred             HHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhH-----HHHHHHHHHH
Q 014319          184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAV-----KRRLACEMVK  258 (427)
Q Consensus       184 fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sl-----iAKLA~q~s~  258 (427)
                      ||+|||||+||++++. +.|+       .||++++|.+|..|||||||||+|+|++. +++++++     |||+|.|+++
T Consensus       138 FQ~AAG~F~~L~e~~~-~~ps-------~Dls~~~L~~L~~LmLAQAQEc~~~Kai~-d~~k~~~~~i~kiAklAaqvs~  208 (385)
T cd09249         138 FQRAAGVLNYLKETFT-HTPS-------YDMSPAMLSVLVKMMLAQAQECLFEKISL-PGIRNEFFTLVKMAQEAAKVGE  208 (385)
T ss_pred             HHHHHHHHHHHHHhcc-CCCC-------CcCCHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcchhhHHHHHHHHHHHHHH
Confidence            9999999999999954 3343       79999999999999999999999999998 8888888     8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCcccccccch-hHHH-----HHHHHHHHHhhhhcc
Q 014319          259 YWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFE-----AKAAAYYYHGLILDE  305 (427)
Q Consensus       259 ~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~-----~kA~A~y~~a~~~~~  305 (427)
                      +|++|.+.+++.....      .++.+| .+++     |+|+||||+|..+.+
T Consensus       209 ~Y~~a~~al~s~~~~~------~i~~~W~~~v~~K~~~f~AlA~Y~~A~~l~~  255 (385)
T cd09249         209 VYMQVHTAMNQAPVKE------NIPYSWSSLVQVKAHHYNALAHYFVATLLID  255 (385)
T ss_pred             HHHHHHHHHhcccccc------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998655422      466789 6665     467999999999885

This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-

>KOG2220 consensus Predicted signal transduction protein [General function prediction only]

Probab=100.00  E-value=8.2e-45  Score=392.02  Aligned_cols=323  Identities=19%  Similarity=0.243  Sum_probs=253.6

Q ss_pred             EEEecCCCCCCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 014319           24 VSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVL  103 (427)
Q Consensus        24 ~~~~~p~lk~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L  103 (427)
                      +.+.+| ||+|.++||..||..||...|.+.-+..-++|..+. ++|..        +..  ........+.+.+||.+|
T Consensus         4 ~~~~~~-lK~t~e~d~~~~l~~~i~~~y~~~~~~~~~~i~~~~-~lR~~--------a~~--~~~~~~~~~~l~~yy~qL   71 (714)
T KOG2220|consen    4 LPLPIP-LKKTSEVDFLKPLSKLIQLSYGESQENRNDAIEKLE-KLRNN--------ANG--VPKPSEGLEVLKRYYGQL   71 (714)
T ss_pred             cccCcc-cccCCccchhhhHHHHHHHhcCCchhhHHHHHHHHH-HHHhc--------ccc--CCcchhhhHHHHHHHHHH
Confidence            337788 999999999999999999987554443323333222 11111        111  111122345788999999


Q ss_pred             hcccCCCCCccceee-EEeeeCCCCC-cceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHH
Q 014319          104 LGLVKDGSQLQYKVQ-FVWVNQEDEA-EETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASV  181 (427)
Q Consensus       104 ~~l~~~~~~~~~~v~-F~W~dsl~~~-~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~  181 (427)
                      +.+..+.+-...++. |+|+|+|+++ .++++.++.||++|||||||++++++|+           +.++.+.|++|.||
T Consensus        72 ~~l~~r~p~~~~~~~~F~W~d~~~~~~~~~~~~~L~fEka~vLfni~~l~s~iaa-----------~~~~~~~d~~k~a~  140 (714)
T KOG2220|consen   72 CYLESRFPMSENEIEEFTWKDAFDSGAKKVTQISLGFEKACVLFNIAALYSQIAA-----------HQSRETVDGYKAAI  140 (714)
T ss_pred             HHHHHhcCcccccccceeeeecccCCccceeeccchhhHHHHHHHHHHHHHHHHH-----------HhccCchHHHHHHH
Confidence            987644433223333 9999999876 8899999999999999999999999999           24567899999999


Q ss_pred             HHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHH
Q 014319          182 DIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQ  261 (427)
Q Consensus       182 ~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~Y~  261 (427)
                      .+||.|||+|.|++.+.+..-+.       .|++++++.++..+|+||||||++.+++. +++++++|+||+.|++.+|.
T Consensus       141 ~~fq~aagaf~~l~~~~~~~~~~-------~d~~~~~l~~~~~l~~AqAQec~f~ks~~-d~~~~~~iaKis~q~~~fy~  212 (714)
T KOG2220|consen  141 AHFQAAAGAFRYLSRDALGVEPL-------VDLSSLTLVFLRFLMLAQAQECFFYKSLT-DNPKPSIIAKLSAQVVLFYE  212 (714)
T ss_pred             HHHHHHHHHHHhhcHHhcCcccc-------cccCHHHHHHHHHhhHHhhchheeehhhc-CCcchHHHHHHHHHHHHHHH
Confidence            99999999999999443443333       79999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014319          262 QAQDNIMNLPLANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEA  335 (427)
Q Consensus       262 ~A~~~l~~~~~~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~  335 (427)
                      +|++.++.... .      .+...| .++     .+.++++||++....+   .+++|++|++|+.+...+++|.+...+
T Consensus       213 ~Al~~~~~~~~-~------~~~~~w~~~~~~k~~~~~~v~~~~~~~~~~e---~~~~ge~i~~l~~~~~~l~~Aqk~~~~  282 (714)
T KOG2220|consen  213 EALKAQIGARA-D------RITKEWLTLVAAKFARFAGVAYYYQSLFLHE---KSKDGEAIARLQLSLLMLSEAQKCSFG  282 (714)
T ss_pred             HHHHHHHHhhh-c------ccchhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999998211 1      355567 444     3466999999999999   999999999999999999999987543


Q ss_pred             cccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCCCC
Q 014319          336 FNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQLP  401 (427)
Q Consensus       336 ~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~lP  401 (427)
                      .        ..++.    ...+.++ ..++.+++|||||||++||+  ++|+|+++.+ |+|.+++-|
T Consensus       283 ~--------~~~~~----~~~~~~~-~~lk~a~kdNdFIyhe~vp~~~~l~~~~~~~~-vkp~~~~~l  336 (714)
T KOG2220|consen  283 E--------FTDVI----ESLSSLE-KALKEAKKDNDFIYHERVPKVSELPPLKAAQL-VKPLPWAVL  336 (714)
T ss_pred             c--------chhHh----hhhhHHH-HHHHhhhcccchhhhcccccccccCCcchhHh-hcCCCcccc
Confidence            1        11122    2335554 46888999999999999994  8999999999 999998877

>KOG2220 consensus Predicted signal transduction protein [General function prediction only]

Probab=98.26  E-value=1.7e-06  Score=95.08  Aligned_cols=183  Identities=14%  Similarity=0.055  Sum_probs=141.8

Q ss_pred             CcEEEecCCCCCCCCcccchHHhhHHHHHHH-HHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHH
Q 014319           22 GEVSVYVPGLRIPKPVDFSQSLGDNLSKNMV-ERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYL  100 (427)
Q Consensus        22 ~~~~~~~p~lk~t~~vd~~~~l~~~I~~~~~-~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~  100 (427)
                      ..+.+...||+++..++...+|..+|..++. ++-..+.+.|..+. ..+++.++++|+.+..      +.+.+.-..++
T Consensus        99 ~~~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq-~aagaf~~l~~~~~~~------~~~~d~~~~~l  171 (714)
T KOG2220|consen   99 KKVTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQ-AAAGAFRYLSRDALGV------EPLVDLSSLTL  171 (714)
T ss_pred             cceeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HHHHHHHhhcHHhcCc------ccccccCHHHH
Confidence            3477788899999999999999999999998 78888888887765 6778888888642221      22233334455


Q ss_pred             HHHhcccCCCCCccceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHH
Q 014319          101 PVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS  180 (427)
Q Consensus       101 ~~L~~l~~~~~~~~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A  180 (427)
                      ..+..+....   .-.+.|  ++++.+ .+..+--..+++.+++||.+|++.++.+     +      .++.+.++++.+
T Consensus       172 ~~~~~l~~Aq---AQec~f--~ks~~d-~~~~~~iaKis~q~~~fy~~Al~~~~~~-----~------~~~~~~~w~~~~  234 (714)
T KOG2220|consen  172 VFLRFLMLAQ---AQECFF--YKSLTD-NPKPSIIAKLSAQVVLFYEEALKAQIGA-----R------ADRITKEWLTLV  234 (714)
T ss_pred             HHHHHhhHHh---hchhee--ehhhcC-CcchHHHHHHHHHHHHHHHHHHHHHHHh-----h------hcccchhHHHHH
Confidence            5555554322   124555  888876 4555666789999999999999999985     1      467888999999


Q ss_pred             HHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHH
Q 014319          181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLG  236 (427)
Q Consensus       181 ~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~  236 (427)
                      ...|++++|++.|....+... ++       .|..+-.+-.+..+||+|||+|..+
T Consensus       235 ~~k~~~~~~v~~~~~~~~~~e-~~-------~~ge~i~~l~~~~~~l~~Aqk~~~~  282 (714)
T KOG2220|consen  235 AAKFARFAGVAYYYQSLFLHE-KS-------KDGEAIARLQLSLLMLSEAQKCSFG  282 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHhhh-hh-------hhhHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999986543 33       6999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	427
3r9m_A	376	BRO1 domain-containing protein BROX; protein bindi	5e-70
3c3r_A	380	Programmed cell death 6-interacting protein; ALIX	1e-39
3rau_A	363	Tyrosine-protein phosphatase non-receptor type 23;	3e-39
1zb1_A	392	BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking	1e-36
2xs1_A	704	Programmed cell death 6-interacting protein; prote	7e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A Length = 376

 Score =  225 bits (573), Expect = 5e-70
 Identities = 76/395 (19%), Positives = 145/395 (36%), Gaps = 45/395 (11%)

Query: 31  LRIPKPVDFS--QSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGST 88
           L+   PV F+    +    +  +   L + R R++ +                       
Sbjct: 12  LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELFT----------------DLSCN 55

Query: 89  LADLHQALEDYLPVLLGLVK------DGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLS 142
              +  A + Y  +L G +         S+L+Y   F W +       +A  +A +E++S
Sbjct: 56  PEMMKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELIS 115

Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQM 202
           +   +A+     A+ L          +  ++E+  +        AAG         LP++
Sbjct: 116 MGFNVALWYTKYASRLAG--------KENITEDEAKEVHRSLKIAAGIFKHLKESHLPKL 167

Query: 203 SPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQ 262
                 E   DL    + A  +Q   +  ++ +  AI+   A   +   LA E   ++Q+
Sbjct: 168 ITP--AEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQK 224

Query: 263 AQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAA 322
           A   + +  L   +  K + ++  K     A AY YHG  L   +     G A+ +LQ A
Sbjct: 225 ADHTLSS--LEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDK---CGEAIRSLQEA 279

Query: 323 DEYFKESKKACEAFN--VAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIM 380
           ++ + +++  C+ +     P  +  P      + L   +        R N     ++KI 
Sbjct: 280 EKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQREN-GFIYFQKIP 338

Query: 381 ETAPTLPDFALA--LKPDEFQLPPVHPSWTDENMN 413
             AP L   A    ++P  F+ PP    WT E + 
Sbjct: 339 TEAPQLELKANYGLVEPIPFEFPPTSVQWTPETLA 373

>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A Length = 380

 Score =  144 bits (365), Expect = 1e-39
 Identities = 65/402 (16%), Positives = 138/402 (34%), Gaps = 61/402 (15%)

Query: 22  GEVSVYVP-GLRIPKPVDFSQSLGDNLSKN---MVERLSALRTRIVVMAAQEGPTITRTR 77
           G ++ ++   L+    VD ++ L   + +      E  +        ++           
Sbjct: 20  GHMATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKL--------- 70

Query: 78  RKSATQHGGSTLADLHQALEDYLPVLLGLVK--DGSQLQYKVQFVW------VNQEDEAE 129
           R++A            + L  Y   +  +      S+ Q  + F W       +    + 
Sbjct: 71  RRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSV 130

Query: 130 ETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAG 189
           + A+++  YE   VL   A L+   A             Q   ++E  + +   +  A+G
Sbjct: 131 KLALASLGYEKSCVLFNCAALASQIAAE-----------QNLDNDEGLKIAAKHYQFASG 179

Query: 190 YLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVK 249
                  H+   +   L RE  VD++   +  L L  L Q  ++    A        A+ 
Sbjct: 180 AFL----HIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKD-AII 234

Query: 250 RRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTE 309
            +LA +   Y+  A          +   ++    +  K+   +A A Y+  ++  +   +
Sbjct: 235 AKLANQAADYFGDAFK---QCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---Q 288

Query: 310 KFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRI 369
           K  G  +A LQ A E  K      + +               +K  S+KI +  ++  + 
Sbjct: 289 KKFGEEIARLQHAAELIKTVASRYDEYV-------------NVKDFSDKINRALAAAKKD 335

Query: 370 NRDLYSYEKI--METAPTLPDFALALKPDEFQLPPVHPSWTD 409
           N  +Y ++++  ++    +    L  K       P+   +TD
Sbjct: 336 NDFIY-HDRVPDLKDLDPIGKATLV-KSTPVN-VPISQKFTD 374

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens} Length = 363

 Score =  143 bits (361), Expect = 3e-39
 Identities = 65/379 (17%), Positives = 122/379 (32%), Gaps = 59/379 (15%)

Query: 30  GLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTL 89
            L+      F  ++   + KN  E   A    +          +   R+ +         
Sbjct: 15  DLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELK--------KLELLRQNAVRVPRDFEG 66

Query: 90  ADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAM 149
             + +     L  L   V  GS  +  V   W       +  A  +  YE   +L+ +  
Sbjct: 67  CSVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSG-KSVAHEDIKYEQACILYNLGA 125

Query: 150 LSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRE 209
           L      +             +VSEE  + S   F  AAG            +     + 
Sbjct: 126 LHSMLGAM-----------DKRVSEEGMKVSCTHFQCAAG--------AFAYLREHFPQA 166

Query: 210 LPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMN 269
             VD++   L       LGQ  +  L  ++   + +  +  R++ ++V Y+++A   + N
Sbjct: 167 YSVDMSRQILTLNVNLMLGQAQECLLEKSMLDNRKS-FLVARISAQVVDYYKEACRALEN 225

Query: 270 LPLANGWGE---KHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYF 326
              A+  G      K  V+ K +   A A+ + G   +E       G  VA  Q+A +  
Sbjct: 226 PDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQK---FGERVAYFQSALDKL 282

Query: 327 KESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL 386
            E+ K  +             +   +++  + I    +S  + N  +Y +E +       
Sbjct: 283 NEAIKLAKGQ--------PDTVQDALRFTMDVIGGKYNSAKKDNDFIY-HEAV------- 326

Query: 387 PDFALALKPDEFQLPPVHP 405
                   P    L PV  
Sbjct: 327 --------PALDTLQPVKG 337

>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae} Length = 392

 Score =  137 bits (346), Expect = 1e-36
 Identities = 57/394 (14%), Positives = 123/394 (31%), Gaps = 52/394 (13%)

Query: 30  GLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTL 89
            L+  + +D+ + L   L K+               +      +   R  +  +   S+L
Sbjct: 14  KLKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATS-----ELDHLRNNANGELAPSSL 68

Query: 90  ADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAI----SNAWYEVLSVLH 145
           ++ +     +L  L   +      + K+ F W + E  + +  +        +E    L 
Sbjct: 69  SEQNLKYYSFLEHLYFRL-GSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLF 127

Query: 146 LMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPE 205
            +A++    A               +   E  + S+    KA    +    + L   S  
Sbjct: 128 NIAVIFTQIAR--------------ENINEDYKNSIANLTKAFSCFEYLSENFLNSPSV- 172

Query: 206 LRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKA--TLAVKRRLACEMVKYWQQA 263
                  DL   + R L      +  ++ +   ++   +     +  +L+      +Q+ 
Sbjct: 173 -------DLQSENTRFLANICHAEAQELFVLKLLNDQISSKQYTLISKLSRATCNLFQKC 225

Query: 264 QDNIMNL--PLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQA 321
            D +  +   +A     K K  V  K    K+ + YYHGL L+E N     G A+A L  
Sbjct: 226 HDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENR---VGEAIAFLDF 282

Query: 322 ADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME 381
           + +    S           P       +       E + K     ++ N  +Y +E +  
Sbjct: 283 SMQQLISSL----------PFKTWLVEFIDFDGFKETLEKKQKELIKDNDFIY-HESVPA 331

Query: 382 TA--PTLPDFALALKPDEFQLPPVHPSWTDENMN 413
                ++        P   ++   +        +
Sbjct: 332 VVQVDSIKALDAIKSPTWEKILEPYMQDVANKYD 365

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score =  118 bits (296), Expect = 7e-29
 Identities = 61/389 (15%), Positives = 125/389 (32%), Gaps = 55/389 (14%)

Query: 30  GLRIPKPVDFSQSLGDNLSKN---MVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGG 86
            L+    VD ++ L   + +      E  +        ++           R++A     
Sbjct: 14  QLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKL---------RRAAVGRPL 64

Query: 87  STLADLHQALEDYLPVLLGLVK--DGSQLQYKVQFVW------VNQEDEAEETAISNAWY 138
                  + L  Y   +  +      S+ Q  + F W       +    + + A+++  Y
Sbjct: 65  DKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGY 124

Query: 139 EVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHV 198
           E   VL   A L+   A             Q   ++E  + +   +  A+G       H+
Sbjct: 125 EKSCVLFNCAALASQIAA-----------EQNLDNDEGLKIAAKHYQFASGAFL----HI 169

Query: 199 LPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVK 258
              +   L RE  VD++   +  L L  L Q  ++    A        A+  +LA +   
Sbjct: 170 KETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKD-AIIAKLANQAAD 228

Query: 259 YWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAA 318
           Y+  A          +   ++    +  K+   +A A Y+  ++  +   + + G  +A 
Sbjct: 229 YFGDAFK---QCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QYYFGEEIAR 282

Query: 319 LQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEK 378
           LQ A E  K              ++     +  +K  S+KI +  ++  + N  +Y    
Sbjct: 283 LQHAAELIKT-------------VASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRV 329

Query: 379 IMETAPTLPDFALALKPDEFQLPPVHPSW 407
                      A  +K     +P      
Sbjct: 330 PDLKDLDPIGKATLVKSTPVNVPISQKFT 358

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 2e-09
 Identities = 54/388 (13%), Positives = 108/388 (27%), Gaps = 130/388 (33%)

Query: 83  QHGGSTLADLHQALEDYLPVLL-GLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYE-- 139
            H      +     +D L V     V +     +  + V    +D   ++ +S    +  
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDN-----FDCKDV----QDM-PKSILSKEEIDHI 54

Query: 140 ------VLSVLHLMAMLSLSQANLL--LLPRTSADGYQ---PKVSEESRRASVDIFLKAA 188
                 V   L L   L   Q  ++   +       Y+     +  E R+ S+   +   
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--- 111

Query: 189 GYLDCAVR-----HVLPQMSPELRRELPVDLAEGDLRALCLQAL--GQGVDIQLGMAIDS 241
            Y++   R      V  + +  + R  P       LR   L  L   + V I  G+   S
Sbjct: 112 -YIEQRDRLYNDNQVFAKYN--VSRLQPYL----KLRQ-ALLELRPAKNVLID-GVL-GS 161

Query: 242 TKATLA--------VKRRLACEMVKYW---------------------------QQAQDN 266
            K  +A        V+ ++  ++  +W                               D+
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 267 IMNLPLANGWGEKHK--LFVKWKYFEAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADE 324
             N+ L     +     L     Y            L+L            V        
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCL--------LVLLN----------V-------- 253

Query: 325 YFKESKKACEAFNVAPPL---SRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME 381
              ++ KA  AFN++  +   +R        K +++ +   T++ + ++     +   + 
Sbjct: 254 ---QNAKAWNAFNLSCKILLTTRF-------KQVTDFLSAATTTHISLD----HHSMTLT 299

Query: 382 TAPTLPDFALALKPDEFQLPP----VHP 405
                      L      LP      +P
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNP 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 2e-08
 Identities = 69/466 (14%), Positives = 137/466 (29%), Gaps = 155/466 (33%)

Query: 44  GDN--LSKNMVERLSALRT-RIVVMAAQEGPTITRTRRKSATQHG----G-STLADLHQA 95
            DN   +K  V RL      R  ++  +    +           G    G + +A     
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--------IDGVLGSGKTWVAL--DV 170

Query: 96  LEDYLPVL----------LG-------LVKDGSQLQYKVQFVWVNQEDEAEETAIS-NAW 137
              Y              L        +++   +L Y++   W ++ D +    +  ++ 
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 138 YEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEE----------SRRASVDIFLKA 187
              L    L+         LL+L     +    K              +R   V  FL A
Sbjct: 231 QAELR--RLLKSKPYENC-LLVL----LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 188 AGYLDCAVRHVLPQMSPE-----LRR-------ELPVDLAEGDLRALCLQA--LGQGVDI 233
           A     ++ H    ++P+     L +       +LP ++   + R L + A  +  G+  
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 234 ----------QLGMAIDSTKATL--AVKRRLACEMVKYWQQA--QDNIMNLP---LANGW 276
                     +L   I+S+   L  A  R++      + + +    +  ++P   L+  W
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKM------FDRLSVFPPSA-HIPTILLSLIW 396

Query: 277 GE--------------KHKLFVKWKYFEAKAAAYYYHGLILDE----GNTEKFHGMAVAA 318
            +              K+ L  K      K +      + L+      N    H   V  
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYLELKVKLENEYALHRSIVDH 452

Query: 319 LQA-------------ADEYF--------KESKKACEAFNVAPPLSRNPPLWGTMKYLSE 357
                            D+YF        K  +   E   +   +  +       ++L +
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-ERMTLFRMVFLD------FRFLEQ 505

Query: 358 KIPKDTSSKVRIN------RDLYSYEK-IMETAPT-------LPDF 389
           KI  D+++           + L  Y+  I +  P        + DF
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	427
3r9m_A	376	BRO1 domain-containing protein BROX; protein bindi	100.0
3c3r_A	380	Programmed cell death 6-interacting protein; ALIX	100.0
3rau_A	363	Tyrosine-protein phosphatase non-receptor type 23;	100.0
2xs1_A	704	Programmed cell death 6-interacting protein; prote	100.0
1zb1_A	392	BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking	100.0
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	82.7

>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A

Probab=100.00  E-value=1.5e-67  Score=536.14  Aligned_cols=344  Identities=23%  Similarity=0.386  Sum_probs=291.5

Q ss_pred             cCCCCCCCCcccchHHh--hHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014319           28 VPGLRIPKPVDFSQSLG--DNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG  105 (427)
Q Consensus        28 ~p~lk~t~~vd~~~~l~--~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~~  105 (427)
                      =| ||.|+.|+|...+.  +-.....+.+++..|+++.+..               .++ ..+++.+++++++||++|.+
T Consensus        10 ~~-lk~T~~v~F~~~~~~~~~~~~~~~~~l~~~R~~l~~~~---------------~~~-~~~~~~~~~~l~~Yl~~L~~   72 (376)
T 3r9m_A           10 NP-LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELF---------------TDL-SCNPEMMKNAADSYFSLLQG   72 (376)
T ss_dssp             CC-CCCBCCCCCCCGGGBCSHHHHHHHHHHHHHHHHHHHHT---------------TCT-TCCHHHHHHHHHHHHHHHGG
T ss_pred             CC-CCCCceeeeeeeeecCCchHHHHHHHHHHHHHHHHHHH---------------hcC-CCCHHHHHHHHHHHHHHHHH
Confidence            36 99999999975442  2345578899999999998887               556 56778889999999999999


Q ss_pred             ccCC------CCCccceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHH
Q 014319          106 LVKD------GSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRA  179 (427)
Q Consensus       106 l~~~------~~~~~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~  179 (427)
                      |..+      +.+++.+|.|+|+|+|+++.+++++|+.||++|||||||++|+++|+....        .++.++||+|.
T Consensus        73 l~~~~~~~~~~~~l~~~i~F~W~dsl~~~~~~~~~sl~fE~a~VLfNiaal~sq~A~~~~~--------~~r~~~e~lK~  144 (376)
T 3r9m_A           73 FINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALWYTKYASRLAG--------KENITEDEAKE  144 (376)
T ss_dssp             GTBCSSCTTCBCTTTTSCCEEECCTTSTTCCEEESCHHHHHHHHHHHHHHHHHHHHHHHHT--------CTTCCHHHHHH
T ss_pred             HHhccccCCccccccccceeEeeCCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHhhc--------cccCChHHHHH
Confidence            8643      234557899999999997789999999999999999999999999984321        35678999999


Q ss_pred             HHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHH
Q 014319          180 SVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKY  259 (427)
Q Consensus       180 A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~  259 (427)
                      |+++||+|||||+||++++++.+.+  ...+++||++++|.+|+.+||||||||+|+||+. +++++++|||||.|++++
T Consensus       145 A~~~fq~AAG~f~~l~~~~~~~~~~--~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~~k~~liAKLa~q~~~~  221 (376)
T 3r9m_A          145 VHRSLKIAAGIFKHLKESHLPKLIT--PAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANF  221 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHTGGGCSS--CCCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcccC--CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHH
Confidence            9999999999999999998876532  1234589999999999999999999999999999 899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCcccccccch-hHHHHH-----HHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Q 014319          260 WQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAK-----AAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKAC  333 (427)
Q Consensus       260 Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~k-----A~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~  333 (427)
                      |++|.+.+++...        .++.+| +++++|     |+||||+|+++.+   +++|||+|+||+.|.+.++++.+.+
T Consensus       222 Y~~a~~~l~~~~~--------~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~---~~k~GeaIa~L~~A~~~l~~a~~~~  290 (376)
T 3r9m_A          222 YQKADHTLSSLEP--------AYSAKWRKYLHLKMCFYTAYAYCYHGETLLA---SDKCGEAIRSLQEAEKLYAKAEALC  290 (376)
T ss_dssp             HHHHHHHHTTSCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccc--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999986432        477889 888776     7999999999999   9999999999999999999999999


Q ss_pred             hhcccCCC--CCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCCCCCCC---CCCccccccccCCCCCCCCCCC
Q 014319          334 EAFNVAPP--LSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL---PDFALALKPDEFQLPPVHPSWT  408 (427)
Q Consensus       334 ~~~~~~~~--~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~~lp~l---~~~~l~vkp~~f~lP~~~~~w~  408 (427)
                      ++|....+  .+..++....++.+.+.|+ +.++++++|||+||||+||+++|.+   |+++| |||+||++|++++.|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~l~~a~kdNd~IY~~~VP~~~p~~~~k~~~~l-vk~~~~~~p~~~~~w~  368 (376)
T 3r9m_A          291 KEYGETKGPGPTVKPSGHLFFRKLGNLVK-NTLEKCQRENGFIYFQKIPTEAPQLELKANYGL-VEPIPFEFPPTSVQWT  368 (376)
T ss_dssp             HHHHTCCCSSCCCCGGGSHHHHHHHHHHH-HHHHHHHHHHHHTTCCCCCSSCCCCCCCCSSCC-CCCCCCCCCCCCTTCC
T ss_pred             HHhccccCCccccccchhhHHHHHHHHHH-HHHHHHHhhccceecccCCCCCCCcccccccce-ecCcCCCCCCCChhhh
Confidence            99886543  2333332234556666674 7899999999999999999877766   56889 9999999999999999


Q ss_pred             Cccc
Q 014319          409 DENM  412 (427)
Q Consensus       409 ~~~~  412 (427)
                      ++.|
T Consensus       369 ~~~~  372 (376)
T 3r9m_A          369 PETL  372 (376)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8654

>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A

Probab=100.00  E-value=6.7e-65  Score=517.30  Aligned_cols=324  Identities=21%  Similarity=0.245  Sum_probs=270.5

Q ss_pred             CcCcEEEecCCCCCCCCcccchHHhhHHHHHH-------------HHHHHHHHHHHHHHhhhcCCccccccccccccCCC
Q 014319           20 NIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNM-------------VERLSALRTRIVVMAAQEGPTITRTRRKSATQHGG   86 (427)
Q Consensus        20 ~~~~~~~~~p~lk~t~~vd~~~~l~~~I~~~~-------------~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~   86 (427)
                      .|.. ++.+| ||+|++|||..+|++||.++|             +++++.+|++++...         +     +.+  
T Consensus        21 ~m~~-~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~~~~~~~---------~-----~~~--   82 (380)
T 3c3r_A           21 HMAT-FISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRP---------L-----DKH--   82 (380)
T ss_dssp             --CC-CCCCC-CCCBCCCCCHHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHHHHHSS---------C-----CCS--
T ss_pred             hhcc-ccCCC-CCCCCcCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhcC---------C-----CcC--
Confidence            3443 77788 999999999999999999886             457778888765432         0     111  


Q ss_pred             CCHHHHHHHHHHHHHHHhcccCCCC--CccceeeEEeeeCCC------CCcceeecchHHHHHHHHHHHHHHHHHHHHhh
Q 014319           87 STLADLHQALEDYLPVLLGLVKDGS--QLQYKVQFVWVNQED------EAEETAISNAWYEVLSVLHLMAMLSLSQANLL  158 (427)
Q Consensus        87 s~~~~l~~~l~~Y~~~L~~l~~~~~--~~~~~v~F~W~dsl~------~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~  158 (427)
                         +..++.|.+||++|..+..+.+  ..+.+|.|+|+|+|+      |+.+++++|+.||++|||||+|++|+++|+  
T Consensus        83 ---~~~~~~L~~Y~~~L~~l~~rfp~~~~~~~i~F~W~d~~~~~s~~~g~~~~~~~~l~fE~a~VLfNlgal~s~~A~--  157 (380)
T 3c3r_A           83 ---EGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAA--  157 (380)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTTTTCSSCCCCCCEEEECSSCCCCSSSCCCEEEESCHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             ---hHHHHHHHHHHHHHHHHHcCCCCCCCccceeEEeecCCccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHH--
Confidence               3446789999999998754432  234689999999996      446899999999999999999999999998  


Q ss_pred             ccCCCCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHh
Q 014319          159 LLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMA  238 (427)
Q Consensus       159 ~~~~~~~~~~~~~~t~dglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KA  238 (427)
                               .++|.+++|+|.||++||+|||||+||++++++.++.    .+|+||++++|.+|+.+||||||||+|+||
T Consensus       158 ---------~~~r~~~eglK~A~~~fq~AAG~f~~l~~~~l~~~~~----~~~~Dls~~~l~~L~~l~LAQAQE~~~~Ka  224 (380)
T 3c3r_A          158 ---------EQNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSR----EPTVDISPDTVGTLSLIMLAQAQEVFFLKA  224 (380)
T ss_dssp             ---------TSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CCCTTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------HhcCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     2578899999999999999999999999998765432    345899999999999999999999999999


Q ss_pred             hhhccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhH
Q 014319          239 IDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFH  312 (427)
Q Consensus       239 i~~~k~k~sliAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~  312 (427)
                      +. +++++++|||||.|++++|++|.+.++..+         .+..+| +++     .++|+||||+|+++.+   +++|
T Consensus       225 i~-~~~k~~liAkLa~~~~~~Y~~A~~~l~~~~---------~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~  291 (380)
T 3c3r_A          225 TR-DKMKDAIIAKLANQAADYFGDAFKQCQYKD---------TLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QKKF  291 (380)
T ss_dssp             HH-TTCCHHHHHHHHHHHHHHHHHHHHHHTTCC---------CSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCH
T ss_pred             Hh-cCCChhHHHHHHHHHHHHHHHHHHHHcccc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccH
Confidence            99 888999999999999999999999998222         244567 554     4577999999999999   9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCc
Q 014319          313 GMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFA  390 (427)
Q Consensus       313 GeaIa~L~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~  390 (427)
                      |++||||+.|.+.++++.+.++.+.         +    ++.+.++|+ +.++++++|||+||||+||+  +||+|+++.
T Consensus       292 GeaIa~L~~A~~~l~~a~~~~~~~~---------~----l~~l~~~i~-~~l~~a~kdNd~IY~e~VP~~~~Lp~i~~~~  357 (380)
T 3c3r_A          292 GEEIARLQHAAELIKTVASRYDEYV---------N----VKDFSDKIN-RALAAAKKDNDFIYHDRVPDLKDLDPIGKAT  357 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTTC---------C----CHHHHHHHH-HHHHHHHHHHHHTTCCCCCCGGGSCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchH---------h----HHHHHHHHH-HHHHHHHHhhCeecccCCCCcccCCCCCCCc
Confidence            9999999999999999998876442         1    235566665 67888999999999999994  799999999


Q ss_pred             cccccccCCCCCCCCCCC
Q 014319          391 LALKPDEFQLPPVHPSWT  408 (427)
Q Consensus       391 l~vkp~~f~lP~~~~~w~  408 (427)
                      | |||+||++|. ++.|+
T Consensus       358 l-vk~~~~~~p~-~~~~~  373 (380)
T 3c3r_A          358 L-VKSTPVNVPI-SQKFT  373 (380)
T ss_dssp             C-CCCCCCCSCC-SSSCC
T ss_pred             e-ecccCCCCCC-ccchh
Confidence            9 9999999996 88886

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.9e-66  Score=521.33  Aligned_cols=327  Identities=19%  Similarity=0.205  Sum_probs=265.6

Q ss_pred             EEecCCCCCCCCcccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014319           25 SVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL  104 (427)
Q Consensus        25 ~~~~p~lk~t~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~~L~  104 (427)
                      .+.+| ||+|++|||..||++||.++|.++.+.++++|..+. ++|+.++++.|         + ....+.|.+||.+|.
T Consensus        11 mi~l~-lK~t~~vd~~~~L~~~I~~~y~e~~~~~~~~l~~l~-~LR~~~~~~~~---------~-~~g~~~L~~Yy~qL~   78 (363)
T 3rau_A           11 MIWLD-LKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLE-LLRQNAVRVPR---------D-FEGCSVLRKYLGQLH   78 (363)
T ss_dssp             CCCCC-CCCEEEECCHHHHHHHHHHTTCSCTTTTHHHHHHHH-HHHHHHHTCCS---------S-HHHHHHHHHHHHHHH
T ss_pred             ccCCC-CCcCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhccCCC---------C-HHHHHHHHHHHHHHH
Confidence            34556 999999999999999999998655455555544443 44444444332         1 123468999999998


Q ss_pred             cccCCCC---CccceeeEEeeeCCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCHHHHHHHH
Q 014319          105 GLVKDGS---QLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASV  181 (427)
Q Consensus       105 ~l~~~~~---~~~~~v~F~W~dsl~~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~dglK~A~  181 (427)
                      .+..+++   ....+|.|+|+|+|++ ++++++|+.||++|||||||++|+++|++           ++|.+++|+|.||
T Consensus        79 ~l~~rfp~~~~~~~~i~F~W~ds~~~-~~~~~~sl~fE~a~VLfNiaal~s~~a~~-----------~~r~~~~glK~A~  146 (363)
T 3rau_A           79 YLQSRVPMGSGQEAAVPVTWTEIFSG-KSVAHEDIKYEQACILYNLGALHSMLGAM-----------DKRVSEEGMKVSC  146 (363)
T ss_dssp             HHHHHSCCSTTCTTCCCEEEECTTTC-CEEEESCHHHHHHHHHHHHHHHHHHHHHH-----------SCCCSHHHHHHHH
T ss_pred             HHHhcCCCCcccccceeEEeecccCC-ccccccCHHHHHHHHHHHHHHHHHHHHHH-----------hccCChHHHHHHH
Confidence            8643221   1135899999999988 68999999999999999999999999982           5788999999999


Q ss_pred             HHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHHHHHHHHHH
Q 014319          182 DIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQ  261 (427)
Q Consensus       182 ~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA~q~s~~Y~  261 (427)
                      ++||+|||||+||++++.+ .|       |+||++++|.+|+.+||||||||+|+||+. +++++++|||||.|++++|+
T Consensus       147 ~~fq~AAG~f~~l~~~~~~-~~-------~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~~k~~liAkLa~q~~~~Y~  217 (363)
T 3rau_A          147 THFQCAAGAFAYLREHFPQ-AY-------SVDMSRQILTLNVNLMLGQAQECLLEKSML-DNRKSFLVARISAQVVDYYK  217 (363)
T ss_dssp             HHHHHHHHHHHHHHHHCCS-CS-------SGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCC-CC-------CCcCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHH
Confidence            9999999999999999743 23       379999999999999999999999999999 78899999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCcccccccch-hHHH-----HHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 014319          262 QAQDNIMNLPLANGWGEKHKLFVKW-KYFE-----AKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFKESKKACEA  335 (427)
Q Consensus       262 ~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~-----~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~~~  335 (427)
                      +|.+.+++.+....+   ..++.+| ++++     ++|+||||+|+++.+   +++||++|+||+.|.+.++++.+.++.
T Consensus       218 ~a~~~l~~~~~~~~~---~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~~a~~~~k~  291 (363)
T 3rau_A          218 EACRALENPDTASLL---GRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEE---QQKFGERVAYFQSALDKLNEAIKLAKG  291 (363)
T ss_dssp             HHHHHHTCHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcCcccccc---ccccHHHHHHHHHHHHHHHHHHHHHHHHhHHH---hhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999865421100   1255677 5554     467999999999999   999999999999999999999998763


Q ss_pred             cccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCCC
Q 014319          336 FNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQL  400 (427)
Q Consensus       336 ~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~l  400 (427)
                      +        ...+.+.++.+.+.|+ +.++++++||||||||+||+  +||+|++..| |||+||+.
T Consensus       292 ~--------~~~~~~~~~~~~~~i~-~~l~~aekdNd~IY~~~VP~~~~L~~i~~~~l-vk~~p~~~  348 (363)
T 3rau_A          292 Q--------PDTVQDALRFTMDVIG-GKYNSAKKDNDFIYHEAVPALDTLQPVKGAPL-VKPLPVNP  348 (363)
T ss_dssp             C--------CHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCCCCCGGGSCCCCCCCC-CCCCCCCT
T ss_pred             C--------chhHHHHHHHHHHHHH-HHHHHHHhccCcCCcccCCCccccCCCCCCcc-ccCCCCCc
Confidence            1        1124455556666675 68999999999999999997  7999999999 99999885

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A

Probab=100.00  E-value=5.3e-60  Score=515.17  Aligned_cols=330  Identities=18%  Similarity=0.215  Sum_probs=268.6

Q ss_pred             EEecCCCCCCCCcccchHHhhHHHHHHH---HHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHH
Q 014319           25 SVYVPGLRIPKPVDFSQSLGDNLSKNMV---ERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLP  101 (427)
Q Consensus        25 ~~~~p~lk~t~~vd~~~~l~~~I~~~~~---~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~~  101 (427)
                      ++.+| ||+|++|||..||++||.++|.   ++...+++++..+. ++|+.+...      .. ..+ +...+.|.+||+
T Consensus        10 ~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~-~lR~~~~~~------~~-~~~-~~~~~~L~~Y~~   79 (704)
T 2xs1_A           10 FISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELS-KLRRAAVGR------PL-DKH-EGALETLLRYYD   79 (704)
T ss_dssp             CCCCC-CCCBCCCCSHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH-HHHHHHHTS------CC-CCC-HHHHHHHHHHHH
T ss_pred             hhcCC-CCCCCcCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHH-HHHHHHhhC------CC-CCC-HHHHHHHHHHHH
Confidence            78888 9999999999999999999876   55555555555444 222221110      01 111 345678999999


Q ss_pred             HHhcccCCCC--CccceeeEEeeeCCC------CCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCC
Q 014319          102 VLLGLVKDGS--QLQYKVQFVWVNQED------EAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVS  173 (427)
Q Consensus       102 ~L~~l~~~~~--~~~~~v~F~W~dsl~------~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t  173 (427)
                      +|..+..+.+  ..+.+|.|+|+|+|+      |+.+++++|+.||++|||||+|++|+++|+           .+++.+
T Consensus        80 ~L~~l~~rfp~~~~~~~i~F~W~d~~~~~s~~~~~~~~~~~~l~fE~a~vLfNlaal~s~~A~-----------~~~r~~  148 (704)
T 2xs1_A           80 QICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAA-----------EQNLDN  148 (704)
T ss_dssp             HHHHHGGGSCTTTCSSCCCEEEECTTCCCSSSSSCCEEEECCHHHHHHHHHHHHHHHHHHHHH-----------TSCTTS
T ss_pred             HHHHHHcCCCCCCCcccceeeeecCcccccccCCCCceeeccHHHHHHHHHHHHHHHHHHHHH-----------HhCCCC
Confidence            9998754322  224689999999996      346889999999999999999999999998           257788


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhhccchhhHHHHHH
Q 014319          174 EESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLA  253 (427)
Q Consensus       174 ~dglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sliAKLA  253 (427)
                      ++|+|.||++||+|||||+||++++++.++.    .+|+||++++|.+|+.+||||||||+|+||+. +++++++|||||
T Consensus       149 ~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~----~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~~k~~liAkLa  223 (704)
T 2xs1_A          149 DEGLKIAAKHYQFASGAFLHIKETVLSALSR----EPTVDISPDTVGTLSLIMLAQAQEVFFLKATR-DKMKDAIIAKLA  223 (704)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHH
Confidence            9999999999999999999999998765432    34589999999999999999999999999999 888999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHHH
Q 014319          254 CEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYFK  327 (427)
Q Consensus       254 ~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l~  327 (427)
                      .+++++|++|.+.+...+         .++.+| +++     +++|+||||+|+++.+   +++||++||||+.|.++++
T Consensus       224 ~~~~~~Y~~A~~~l~~~~---------~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l~  291 (704)
T 2xs1_A          224 NQAADYFGDAFKQCQYKD---------TLPKEVFPVLAAKHCIMQANAEYHQSILAKQ---QYYFGEEIARLQHAAELIK  291 (704)
T ss_dssp             HHHHHHHHHHHHHHHTCC---------CSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HhHHHHHHHHHHHHHHHHH
Confidence            999999999999998211         244456 444     5577999999999999   9999999999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCCCCCCCC
Q 014319          328 ESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQLPPVHP  405 (427)
Q Consensus       328 ~a~~~~~~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~lP~~~~  405 (427)
                      ++.+.++.+.         .    ++.+.+.|+ ..+++++++||+||||+||+  +||+|+++.| |||+||+.| .++
T Consensus       292 ~a~~~~~~~~---------~----~~~l~~~i~-~~l~~~~kdNd~IY~e~VP~~~~L~~i~~~~l-vk~~~~~~p-~~~  355 (704)
T 2xs1_A          292 TVASRYDEYV---------N----VKDFSDKIN-RALAAAKKDNDFIYHDRVPDLKDLDPIGKATL-VKSTPVNVP-ISQ  355 (704)
T ss_dssp             HHHHHSTTTC---------C----CHHHHHHHH-HHHHHHHHHHHHTTCCCCCCGGGSCCCCCCCC-CCCCCCCSC-CST
T ss_pred             HHHHHhcchH---------h----HHHHHHHHH-HHHHHHHHhhCeeeccCCCCccccCCccCccc-cccCCCCcc-ccc
Confidence            9998765432         1    234566665 67888999999999999996  8999999999 999999998 477


Q ss_pred             CCC
Q 014319          406 SWT  408 (427)
Q Consensus       406 ~w~  408 (427)
                      .|+
T Consensus       356 ~~~  358 (704)
T 2xs1_A          356 KFT  358 (704)
T ss_dssp             TCC
T ss_pred             chh
Confidence            775

>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-61  Score=490.52  Aligned_cols=324  Identities=15%  Similarity=0.157  Sum_probs=256.7

Q ss_pred             EEEecCCCCCCCCcccchHHhhHHHHHHHHH--HHHHHHHHH-HHhhhcCCccccccccccccCCCCCHHHHHHHHHHHH
Q 014319           24 VSVYVPGLRIPKPVDFSQSLGDNLSKNMVER--LSALRTRIV-VMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYL  100 (427)
Q Consensus        24 ~~~~~p~lk~t~~vd~~~~l~~~I~~~~~~~--l~~lR~~i~-~~~~~~~~~~~~~~r~~~~~~~~s~~~~l~~~l~~Y~  100 (427)
                      -++.+| ||+|++|||..||++||.++|.++  -+.++++|. ++. ++|+.++++.          ..+..++.|.+||
T Consensus         9 ~~l~~p-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~y~~~l~~~l~-~lR~~~~~~~----------~~~~~~~~l~~Y~   76 (392)
T 1zb1_A            9 YLFDLK-LKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELD-HLRNNANGEL----------APSSLSEQNLKYY   76 (392)
T ss_dssp             CCCCCC-CCCBCCCCHHHHHHHHHHHHSCTTTGGGGCCHHHHHHHH-HHHHHTTSSC----------CHHHHHHHHHHHH
T ss_pred             ccccCC-CCCCCccCHHHHHHHHHHHHcCCCCchhhHHHHHHHHHH-HHHHHhhcCC----------CChHHHHHHHHHH
Confidence            467788 999999999999999999988643  222233333 222 2222222211          1245678999999


Q ss_pred             HHHhcccCCC--CCccceeeEEeeeCCC----CCcceeecchHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCH
Q 014319          101 PVLLGLVKDG--SQLQYKVQFVWVNQED----EAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSE  174 (427)
Q Consensus       101 ~~L~~l~~~~--~~~~~~v~F~W~dsl~----~~~~~~~~sl~fEkasVLfNiaal~s~~aa~~~~~~~~~~~~~~~~t~  174 (427)
                      ++|.++..+.  +..+.+|.|+|+|+|+    ++.+++++|+.||++|||||+|++|+++|++           +++.  
T Consensus        77 ~~L~~l~~rf~~~~~~~~i~F~W~d~l~~~~~~~~~~~~~~l~fE~a~vLfNlaal~s~~A~~-----------~~r~--  143 (392)
T 1zb1_A           77 SFLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFNIAVIFTQIARE-----------NINE--  143 (392)
T ss_dssp             HHHHHHHHHHGGGGGGGCCCEEEECCCCSSSCSSCEEEECCHHHHHHHHHHHHHHHHHHHHHH-----------TTTS--
T ss_pred             HHHHHHHhcCCCCCCcccceeeeecccccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHH-----------hchH--
Confidence            9999975321  1124689999999996    5578999999999999999999999999983           3333  


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHhccCCCCCccccCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhhhh--ccchhhHHHHH
Q 014319          175 ESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDS--TKATLAVKRRL  252 (427)
Q Consensus       175 dglK~A~~~fq~AAG~F~~l~e~~~~~~~~~~~~~~p~Dl~~~~L~aL~~lmLAQAQE~~~~KAi~~--~k~k~sliAKL  252 (427)
                       |+|.||++||+|||||+||++++++. |       |+||++++|.+|+.+||||||||+|+||+.+  +++++++||||
T Consensus       144 -~lk~A~~~fq~AAG~f~~l~~~~~~~-~-------~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~~~k~~liAkL  214 (392)
T 1zb1_A          144 -DYKNSIANLTKAFSCFEYLSENFLNS-P-------SVDLQSENTRFLANICHAEAQELFVLKLLNDQISSKQYTLISKL  214 (392)
T ss_dssp             -SSHHHHHHHHHHHHHHHHHHHHCCCC-S-------SGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGCHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcCCC-C-------CCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhHHHHH
Confidence             89999999999999999999998753 2       3799999999999999999999999999973  48899999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCcccccccch-hHH-----HHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHH
Q 014319          253 ACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYF-----EAKAAAYYYHGLILDEGNTEKFHGMAVAALQAADEYF  326 (427)
Q Consensus       253 A~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~-----~~kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~~l  326 (427)
                      |.|++++|++|.+.+++.+..  +  +..+..+| +++     .++|+||||+|+++.+   +++||++||||+.|.+.+
T Consensus       215 a~~~~~~Y~~a~~~l~~~~~~--~--~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e---~~k~GeaIa~L~~A~~~l  287 (392)
T 1zb1_A          215 SRATCNLFQKCHDFMKEIDDD--V--AIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEE---ENRVGEAIAFLDFSMQQL  287 (392)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCT--T--TSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccc--c--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHH
Confidence            999999999999999977531  0  01245567 555     4577999999999999   999999999999999999


Q ss_pred             HHHHHHHhhcccCCCCCCCCChhhHHHHHHhhccchhhhHhhhcCCceeeccCCC--CCCCCCCCccccccccCCC
Q 014319          327 KESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQL  400 (427)
Q Consensus       327 ~~a~~~~~~~~~~~~~~~~~~~~~~~k~l~~~i~~~~l~~a~~nnd~IYhe~VP~--~lp~l~~~~l~vkp~~f~l  400 (427)
                      +++.+.++.+.        +.+  .++.+.++|+ +.+++++++||+||||+||+  +||+|++..+ |||+||+-
T Consensus       288 ~~a~~~~~~~~--------~~~--d~~~l~~~i~-~~l~~a~kdNd~IY~e~VP~~~~L~~i~~~~~-vk~~~~~~  351 (392)
T 1zb1_A          288 ISSLPFKTWLV--------EFI--DFDGFKETLE-KKQKELIKDNDFIYHESVPAVVQVDSIKALDA-IKSPTWEK  351 (392)
T ss_dssp             HHHGGGCTTTT--------TTS--CHHHHHHHHH-HHHHHHHHHHHSSSCCCCCSSCCGGGSCCCCC-CCCCCHHH
T ss_pred             HHHHHhhhccc--------hHH--HHHHHHHHHH-HHHHHHHHHhCccCcCCCCCccccccCCCcCc-ccccCCcc
Confidence            99987754211        111  1446677775 67888999999999999994  7999999999 99997653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=82.70  E-value=12  Score=29.81  Aligned_cols=30  Identities=17%  Similarity=0.066  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhhhccCCcchhHHHHHHHHHHHHH
Q 014319          292 KAAAYYYHGLILDEGNTEKFHGMAVAALQAADE  324 (427)
Q Consensus       292 kA~A~y~~a~~~~~~~~~~k~GeaIa~L~~A~~  324 (427)
                      .+.+|+..|.....   .+++-+||..++.|..
T Consensus        82 ~a~~~~~lg~~~~~---~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           82 IAKAMSRAGNAFQK---QNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Confidence            45678888888888   7888888887776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00