Citrus Sinensis ID: 014355

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
MATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGIYIWI
cccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHcccccccccccEEEcccEEEEEEcHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHcccEEEccccEEEEEccccccEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHccccccccccccccEEEcccEEEccccccccccccccEEHHHHHHHHHHHHHHHHHHHcccccc
cccccccHHHHHHHHHHHHHHHHHHHcccccccccEEcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHccccEEccccEEEEEccHHHHHHHHHHHHHcccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccHHHHHHHHHHHHcccEEEccccEEEEEccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHccccccccccEEEEEEEccEEEEcccccEccccccccEEHHHHHHHHHHHHHHHHHHccccEcc
mateeentgnvKRELEKVFDLALkatvpnetdvrpLIAACTAKfgdyqcnnaMGLWSkikgkgtefkgpqpvgqaimknlppsemiescsvagpgfVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVvdfsspniakemhvgHLRSTIIGDSLARMLEFSNVEVLrrnhvgdwgtQFGMLIEYLFekfpnsedanETAIGELQEFYRRsknrfdsdpafKERAQQAVVRLqsgepkyhEAWAQICEISRKEFDKVYKRLRVDLEekgesfynpyipgvidelskqglveesqgaRVIFIEGVNIPLIIvksdggfnyasTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKragwlsaddstypkashvgfglvlgedgkrlRTRFSEVVRLVDLLDEAKNRSKAVLIERGIYIWI
mateeentgnvkrelEKVFDLALkatvpnetdvrPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSspniakemhvghLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVrlqsgepkyhEAWAQICEISRKEFDKVYKRLRVDLeekgesfynpyipGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVgfglvlgedgkrlrTRFSEVVRlvdlldeaknrskavliergiyiwi
MATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGIYIWI
***************EKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGT********************MIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFP*********************************************PKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGIYIW*
**********VKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLV************KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGI****
***********KRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGIYIWI
*****ENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGIYIWI
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MATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERGIYIWI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query426 2.2.26 [Sep-21-2011]
Q5N643 584 Arginine--tRNA ligase OS= yes no 0.924 0.674 0.496 1e-112
Q8KPU9 584 Arginine--tRNA ligase OS= yes no 0.924 0.674 0.496 1e-112
Q8DKN4 584 Arginine--tRNA ligase OS= yes no 0.913 0.666 0.503 1e-112
Q6P1S4 660 Arginine--tRNA ligase, cy yes no 0.950 0.613 0.487 1e-111
B0JLI8 585 Arginine--tRNA ligase OS= yes no 0.889 0.647 0.503 1e-111
P37880 661 Arginine--tRNA ligase, cy yes no 0.955 0.615 0.490 1e-110
A7YW98 660 Arginine--tRNA ligase, cy yes no 0.946 0.610 0.490 1e-110
Q9D0I9 660 Arginine--tRNA ligase, cy yes no 0.955 0.616 0.480 1e-108
P54136 660 Arginine--tRNA ligase, cy yes no 0.955 0.616 0.483 1e-108
Q5RA20 660 Arginine--tRNA ligase, cy yes no 0.955 0.616 0.478 1e-108
>sp|Q5N643|SYR_SYNP6 Arginine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argS PE=3 SV=1 Back     alignment and function desciption
 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/419 (49%), Positives = 282/419 (67%), Gaps = 25/419 (5%)

Query: 14  ELEKVFDLALKATV-PNETDVRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFKGPQP 71
           +L   F  AL A+  P      PL+   T  KFGDYQ N AM L  ++       + P+ 
Sbjct: 7   QLRDRFQAALAASFGPEWAATDPLLVPATNPKFGDYQSNVAMSLAKQLG------QPPRA 60

Query: 72  VGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVD---GIETWAPKLRVK 128
           + + +++NL  +++ E  ++AGPGF+N  L  +++   +Q++  D   GI+  +P  RV 
Sbjct: 61  IAETLVQNLNLADLCEPPAIAGPGFINFTLQPSYLVAQLQQLQTDERLGIQPVSPPQRV- 119

Query: 129 KAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYL 188
             +VDFSSPNIAKEMHVGHLRSTIIGDS+AR+LEF   EVLR NHVGDWGTQFGMLI +L
Sbjct: 120 --IVDFSSPNIAKEMHVGHLRSTIIGDSIARVLEFQGHEVLRLNHVGDWGTQFGMLIAFL 177

Query: 189 FEKFPNS-EDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQ 247
            E++P +    +   I +L  FY+++K RFD DP+F+E A+Q VV LQSGE    +AW  
Sbjct: 178 QEQYPQALSQPDALDISDLVAFYKQAKARFDEDPSFQETARQRVVDLQSGEATARQAWQL 237

Query: 248 ICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVN 307
           +C+ SR+EF K+Y RL + LEE+GESFYNPY+P ++++L + GL+ E QGA+ +F+EG  
Sbjct: 238 LCDQSRREFQKIYDRLDIQLEERGESFYNPYLPAIVEDLRRLGLLVEDQGAQCVFLEGFQ 297

Query: 308 ------IPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAK 361
                 +PLI+ KSDGG+NYA+TDLAAL YRL +++A+ IIYVTD GQ  HF  VF  A+
Sbjct: 298 NKEGQPLPLIVQKSDGGYNYATTDLAALRYRLGQDQAQRIIYVTDSGQANHFAQVFQVAQ 357

Query: 362 RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIER 420
           RAGWL A      +  HV FGLV GEDGK+L+TR  + VRL DLLDEA +R++  L  R
Sbjct: 358 RAGWLPA----AAQIEHVPFGLVQGEDGKKLKTRAGDTVRLRDLLDEAVDRARTDLTTR 412

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9
>sp|Q8KPU9|SYR_SYNE7 Arginine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942) GN=argS PE=3 SV=2 Back     alignment and function description
>sp|Q8DKN4|SYR_THEEB Arginine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=argS PE=3 SV=1 Back     alignment and function description
>sp|Q6P1S4|SYRC_XENTR Arginine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=rars PE=2 SV=1 Back     alignment and function description
>sp|B0JLI8|SYR_MICAN Arginine--tRNA ligase OS=Microcystis aeruginosa (strain NIES-843) GN=argS PE=3 SV=1 Back     alignment and function description
>sp|P37880|SYRC_CRIGR Arginine--tRNA ligase, cytoplasmic OS=Cricetulus griseus GN=RARS PE=2 SV=1 Back     alignment and function description
>sp|A7YW98|SYRC_BOVIN Arginine--tRNA ligase, cytoplasmic OS=Bos taurus GN=RARS PE=2 SV=1 Back     alignment and function description
>sp|Q9D0I9|SYRC_MOUSE Arginine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Rars PE=2 SV=2 Back     alignment and function description
>sp|P54136|SYRC_HUMAN Arginine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=RARS PE=1 SV=2 Back     alignment and function description
>sp|Q5RA20|SYRC_PONAB Arginine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=RARS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
255546293 592 arginyl-tRNA synthetase, putative [Ricin 0.985 0.709 0.826 0.0
224064484 590 predicted protein [Populus trichocarpa] 0.988 0.713 0.827 0.0
449435790 590 PREDICTED: arginine--tRNA ligase, cytopl 0.985 0.711 0.814 0.0
225445067 649 PREDICTED: arginyl-tRNA synthetase-like 0.988 0.648 0.789 0.0
297738741 691 unnamed protein product [Vitis vinifera] 0.988 0.609 0.713 0.0
15236164 642 Arginyl-tRNA synthetase, class Ic [Arabi 0.988 0.655 0.755 0.0
297799374 590 arginyl-tRNA synthetase [Arabidopsis lyr 0.988 0.713 0.758 0.0
2632106 590 arginyl-tRNA synthetase [Arabidopsis tha 0.988 0.713 0.755 0.0
15219682 590 arginyl-tRNA synthetase [Arabidopsis tha 0.983 0.710 0.762 0.0
2632103 589 arginyl-tRNA synthetase [Arabidopsis tha 0.983 0.711 0.762 0.0
>gi|255546293|ref|XP_002514206.1| arginyl-tRNA synthetase, putative [Ricinus communis] gi|223546662|gb|EEF48160.1| arginyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/420 (82%), Positives = 381/420 (90%)

Query: 2   ATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACTAKFGDYQCNNAMGLWSKIKG 61
           A  E+N GN+K+++ K+F+ +L+ TVP+E DV PL+AACTAKFGDYQCNNAM LWSKIKG
Sbjct: 5   AENEDNVGNLKKQIAKLFEASLRETVPSEPDVEPLVAACTAKFGDYQCNNAMSLWSKIKG 64

Query: 62  KGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETW 121
           K TEFKGP  VGQAIMKNLPPSE+IESCSVAGPGFVNVVLSK WM+K IQKML+DGI++W
Sbjct: 65  KNTEFKGPPAVGQAIMKNLPPSEVIESCSVAGPGFVNVVLSKKWMSKKIQKMLIDGIDSW 124

Query: 122 APKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQF 181
           APKL VK+AVVDFSSPNIAKEMHVGHLRSTIIGD+LARMLEFS V+VLRRNHVGDWGTQF
Sbjct: 125 APKLLVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSKVDVLRRNHVGDWGTQF 184

Query: 182 GMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKY 241
           GMLIE+LFEKFPN ED NE AIG+LQ FY+ SK RFD+D  FKERAQ+AVVRLQ GEPKY
Sbjct: 185 GMLIEFLFEKFPNFEDVNERAIGDLQAFYKASKQRFDADSEFKERAQKAVVRLQGGEPKY 244

Query: 242 HEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVI 301
            +AWAQIC+ISRKEFDKVY+RL V LEEKGESFYNPYIPG+ID LS QGLVEES+GARVI
Sbjct: 245 RQAWAQICDISRKEFDKVYQRLGVQLEEKGESFYNPYIPGIIDALSNQGLVEESEGARVI 304

Query: 302 FIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAK 361
           FIEGVNIPLI+VKSDGGFNYASTDL ALWYRLNEEKAEWIIYVTDVGQQ HFDMVF AAK
Sbjct: 305 FIEGVNIPLIVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAK 364

Query: 362 RAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERG 421
           RA WL ADDS +PKASHVGFGLVLG+DGKR RTR +EVVRLVDLLDEAK RSKAVL+ERG
Sbjct: 365 RASWLPADDSMFPKASHVGFGLVLGDDGKRFRTRATEVVRLVDLLDEAKTRSKAVLVERG 424

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064484|ref|XP_002301499.1| predicted protein [Populus trichocarpa] gi|222843225|gb|EEE80772.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449435790|ref|XP_004135677.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cucumis sativus] gi|449489808|ref|XP_004158422.1| PREDICTED: arginine--tRNA ligase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225445067|ref|XP_002280299.1| PREDICTED: arginyl-tRNA synthetase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297738741|emb|CBI27986.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15236164|ref|NP_194360.1| Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana] gi|2632105|emb|CAB11468.1| arginyl-tRNA synthetase [Arabidopsis thaliana] gi|4539426|emb|CAB38959.1| arginyl-tRNA synthetase [Arabidopsis thaliana] gi|7269482|emb|CAB79485.1| arginyl-tRNA synthetase [Arabidopsis thaliana] gi|332659782|gb|AEE85182.1| Arginyl-tRNA synthetase, class Ic [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799374|ref|XP_002867571.1| arginyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] gi|297313407|gb|EFH43830.1| arginyl-tRNA synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|2632106|emb|CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15219682|ref|NP_176826.1| arginyl-tRNA synthetase [Arabidopsis thaliana] gi|12322268|gb|AAG51163.1|AC074025_13 arginyl-tRNA synthetase [Arabidopsis thaliana] gi|14030685|gb|AAK53017.1|AF375433_1 At1g66530/F28G11_14 [Arabidopsis thaliana] gi|20334712|gb|AAM16217.1| At1g66530/F28G11_14 [Arabidopsis thaliana] gi|332196400|gb|AEE34521.1| arginyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2632103|emb|CAB11467.1| arginyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
TAIR|locus:2136794 642 emb1027 "embryo defective 1027 0.988 0.655 0.755 4.6e-176
TAIR|locus:2028982 590 AT1G66530 [Arabidopsis thalian 0.983 0.710 0.762 1.2e-175
ZFIN|ZDB-GENE-030131-9014 661 rars "arginyl-tRNA synthetase" 0.950 0.612 0.487 4.1e-104
UNIPROTKB|E2QRR5 660 RARS "Uncharacterized protein" 0.955 0.616 0.490 3.3e-102
UNIPROTKB|J9P440 643 RARS "Uncharacterized protein" 0.955 0.632 0.490 3.3e-102
UNIPROTKB|A7YW98 660 RARS "Arginine--tRNA ligase, c 0.946 0.610 0.490 1.1e-101
MGI|MGI:1914297 660 Rars "arginyl-tRNA synthetase" 0.955 0.616 0.480 3.4e-100
UNIPROTKB|P54136 660 RARS "Arginine--tRNA ligase, c 0.955 0.616 0.483 5.6e-100
RGD|1309215 660 Rars "arginyl-tRNA synthetase" 0.955 0.616 0.476 1.2e-99
UNIPROTKB|Q5ZM11 661 RARS "Arginine--tRNA ligase, c 0.931 0.600 0.471 1.7e-98
TAIR|locus:2136794 emb1027 "embryo defective 1027" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1710 (607.0 bits), Expect = 4.6e-176, P = 4.6e-176
 Identities = 319/422 (75%), Positives = 372/422 (88%)

Query:     1 MATEEENTGNVKRELEKVFDLALKATVPNETDVRPLIAACT-AKFGDYQCNNAMGLWSKI 59
             MA  EE TGN+KR+L K+FD++LK TVP+E  V PL+AA    KFGDYQCNNAMGLWS I
Sbjct:    53 MAANEEFTGNLKRQLAKLFDVSLKLTVPDEPSVEPLVAASALGKFGDYQCNNAMGLWSII 112

Query:    60 KGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIE 119
             KGKGT+FKGP  VGQA++K+LP SEM+ESCSVAGPGF+NVVLS  WMAK+I+ ML+DG++
Sbjct:   113 KGKGTQFKGPPAVGQALVKSLPTSEMVESCSVAGPGFINVVLSAKWMAKSIENMLIDGVD 172

Query:   120 TWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGT 179
             TWAP L VK+AVVDFSSPNIAKEMHVGHLRSTIIGD+LARMLE+S+VEVLRRNHVGDWGT
Sbjct:   173 TWAPTLSVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEYSHVEVLRRNHVGDWGT 232

Query:   180 QFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEP 239
             QFGMLIEYLFEKFP+++   ETAIG+LQ FY+ SK++FD D AFKE+AQQAVVRLQ G+P
Sbjct:   233 QFGMLIEYLFEKFPDTDSVTETAIGDLQVFYKASKHKFDLDEAFKEKAQQAVVRLQGGDP 292

Query:   240 KYHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGAR 299
              Y +AWA+IC+ISR EF KVY+RLRV+LEEKGESFYNP+I  VI+EL+ +GLVEES+GAR
Sbjct:   293 VYRKAWAKICDISRTEFAKVYQRLRVELEEKGESFYNPHIAKVIEELNSKGLVEESEGAR 352

Query:   300 VIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSA 359
             VIF+EG +IPL++VKSDGGFNYASTDL ALWYRLNEEKAEWIIYVTDVGQQ HF+M F A
Sbjct:   353 VIFLEGFDIPLMVVKSDGGFNYASTDLTALWYRLNEEKAEWIIYVTDVGQQQHFNMFFKA 412

Query:   360 AKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIE 419
             A++AGWL  +D TYP+ +HVGFGLVLGEDGKR RTR ++VVRLVDLLDEAK RSK  LIE
Sbjct:   413 ARKAGWLPDNDKTYPRVNHVGFGLVLGEDGKRFRTRATDVVRLVDLLDEAKTRSKLALIE 472

Query:   420 RG 421
             RG
Sbjct:   473 RG 474
GO:0000166 "nucleotide binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004814 "arginine-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006420 "arginyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS
GO:0005739 "mitochondrion" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
TAIR|locus:2028982 AT1G66530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9014 rars "arginyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRR5 RARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P440 RARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A7YW98 RARS "Arginine--tRNA ligase, cytoplasmic" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1914297 Rars "arginyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P54136 RARS "Arginine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309215 Rars "arginyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZM11 RARS "Arginine--tRNA ligase, cytoplasmic" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B0JLI8SYR_MICAN6, ., 1, ., 1, ., 1, 90.50370.88960.6478yesno
Q8DKN4SYR_THEEB6, ., 1, ., 1, ., 1, 90.50360.91310.6660yesno
Q8YQU9SYR_NOSS16, ., 1, ., 1, ., 1, 90.50120.86850.6292yesno
B8HSK8SYR_CYAP46, ., 1, ., 1, ., 1, 90.51390.87320.6358yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.190.824
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
PLN02286 576 PLN02286, PLN02286, arginine-tRNA ligase 0.0
COG0018 577 COG0018, ArgS, Arginyl-tRNA synthetase [Translatio 1e-109
PRK01611 507 PRK01611, argS, arginyl-tRNA synthetase; Reviewed 9e-98
pfam00750345 pfam00750, tRNA-synt_1d, tRNA synthetases class I 2e-93
TIGR00456 566 TIGR00456, argS, arginyl-tRNA synthetase 7e-86
PRK12451 562 PRK12451, PRK12451, arginyl-tRNA synthetase; Revie 2e-70
cd00671212 cd00671, ArgRS_core, catalytic core domain of argi 1e-69
pfam0348584 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetas 1e-15
smart0101685 smart01016, Arg_tRNA_synt_N, Arginyl tRNA syntheta 8e-13
cd00802143 cd00802, class_I_aaRS_core, catalytic core domain 1e-07
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase Back     alignment and domain information 
 Score =  815 bits (2108), Expect = 0.0
 Identities = 323/410 (78%), Positives = 360/410 (87%), Gaps = 3/410 (0%)

Query: 13  RELEKVFDLALKATVPNETDVRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFKGPQP 71
           REL K+F+ +L+ TVP+E  V PL+AACT  KFGDYQCNNAMGLWSK+KGKGT FK P+ 
Sbjct: 1   RELAKLFEASLRLTVPDEPSVEPLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRA 60

Query: 72  VGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPKLRVKKAV 131
           V QAI+KNLP SEMIES SVAGPGFVNV LS +W+AK I++MLVDGI+TWAP L VK+AV
Sbjct: 61  VAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIERMLVDGIDTWAPTLPVKRAV 120

Query: 132 VDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEK 191
           VDFSSPNIAKEMHVGHLRSTIIGD+LARMLEFS VEVLRRNHVGDWGTQFGMLIE+LFEK
Sbjct: 121 VDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEK 180

Query: 192 FPNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEI 251
           FPN E  ++ AIG+LQEFY+ +K RFD D  FK RAQQAVVRLQ G+P+Y  AWA+ICEI
Sbjct: 181 FPNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEI 240

Query: 252 SRKEFDKVYKRLRVDLEEKGESFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLI 311
           SR+EF+KVY+RLRV+LEEKGESFYNPYIPGVI+EL  +GLV ES GARVIF+EG +IPLI
Sbjct: 241 SRREFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLI 300

Query: 312 IVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDS 371
           +VKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ HFDMVF AAKRAGWL   + 
Sbjct: 301 VVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWL--PED 358

Query: 372 TYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERG 421
           TYP+  HVGFGLVLGEDGKR RTR  EVVRLVDLLDEAK+RSKA LIERG
Sbjct: 359 TYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERG 408

Length = 576
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234964 PRK01611, argS, arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|216097 pfam00750, tRNA-synt_1d, tRNA synthetases class I (R) Back     alignment and domain information
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|183534 PRK12451, PRK12451, arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|185675 cd00671, ArgRS_core, catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>gnl|CDD|217589 pfam03485, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal domain Back     alignment and domain information
>gnl|CDD|214975 smart01016, Arg_tRNA_synt_N, Arginyl tRNA synthetase N terminal dom Back     alignment and domain information
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 426
PLN02286 576 arginine-tRNA ligase 100.0
COG0018 577 ArgS Arginyl-tRNA synthetase [Translation, ribosom 100.0
PRK12451 562 arginyl-tRNA synthetase; Reviewed 100.0
KOG4426 656 consensus Arginyl-tRNA synthetase [Translation, ri 100.0
TIGR00456 566 argS arginyl-tRNA synthetase. This model recognize 100.0
PRK01611 507 argS arginyl-tRNA synthetase; Reviewed 100.0
PF00750354 tRNA-synt_1d: tRNA synthetases class I (R); InterP 100.0
KOG1195 567 consensus Arginyl-tRNA synthetase [Translation, ri 100.0
cd00671212 ArgRS_core catalytic core domain of arginyl-tRNA s 100.0
COG0215 464 CysS Cysteinyl-tRNA synthetase [Translation, ribos 99.96
PLN02946 557 cysteine-tRNA ligase 99.95
PRK00260 463 cysS cysteinyl-tRNA synthetase; Validated 99.95
PF01406300 tRNA-synt_1e: tRNA synthetases class I (C) catalyt 99.95
PRK14536 490 cysS cysteinyl-tRNA synthetase; Provisional 99.95
PRK14534 481 cysS cysteinyl-tRNA synthetase; Provisional 99.95
TIGR00435 465 cysS cysteinyl-tRNA synthetase. This model finds t 99.95
PRK12418384 cysteinyl-tRNA synthetase; Provisional 99.94
PRK14535 699 cysS cysteinyl-tRNA synthetase; Provisional 99.94
TIGR03447411 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino- 99.94
PTZ00399 651 cysteinyl-tRNA-synthetase; Provisional 99.93
cd00668312 Ile_Leu_Val_MetRS_core catalytic core domain of is 99.89
KOG2007 586 consensus Cysteinyl-tRNA synthetase [Translation, 99.89
cd00802143 class_I_aaRS_core catalytic core domain of class I 99.89
cd00812314 LeuRS_core catalytic core domain of leucyl-tRNA sy 99.84
cd00672213 CysRS_core catalytic core domain of cysteinyl tRNA 99.83
cd00818338 IleRS_core catalytic core domain of isoleucyl-tRNA 99.83
cd00814319 MetRS_core catalytic core domain of methioninyl-tR 99.83
TIGR00464 470 gltX_bact glutamyl-tRNA synthetase, bacterial fami 99.82
cd00817 382 ValRS_core catalytic core domain of valyl-tRNA syn 99.8
PRK01406 476 gltX glutamyl-tRNA synthetase; Reviewed 99.8
PRK11893 511 methionyl-tRNA synthetase; Reviewed 99.79
cd00674353 LysRS_core_class_I catalytic core domain of class 99.79
PRK14895 513 gltX glutamyl-tRNA synthetase; Provisional 99.77
TIGR00398 530 metG methionyl-tRNA synthetase. The methionyl-tRNA 99.75
PRK12558 445 glutamyl-tRNA synthetase; Provisional 99.74
PF0348585 Arg_tRNA_synt_N: Arginyl tRNA synthetase N termina 99.73
PRK12267 648 methionyl-tRNA synthetase; Reviewed 99.71
PRK00133 673 metG methionyl-tRNA synthetase; Reviewed 99.68
PRK12268 556 methionyl-tRNA synthetase; Reviewed 99.67
PLN02224 616 methionine-tRNA ligase 99.67
PRK12410 433 glutamylglutaminyl-tRNA synthetase; Provisional 99.65
PRK13208 800 valS valyl-tRNA synthetase; Reviewed 99.64
COG0143 558 MetG Methionyl-tRNA synthetase [Translation, ribos 99.63
TIGR03838272 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe 99.63
PRK00750 510 lysK lysyl-tRNA synthetase; Reviewed 99.62
PF00749314 tRNA-synt_1c: tRNA synthetases class I (E and Q), 99.61
cd00808239 GluRS_core catalytic core domain of discriminating 99.61
PLN02627 535 glutamyl-tRNA synthetase 99.6
TIGR00422 861 valS valyl-tRNA synthetase. The valyl-tRNA synthet 99.57
cd09287240 GluRS_non_core catalytic core domain of non-discri 99.55
PF09334 391 tRNA-synt_1g: tRNA synthetases class I (M); InterP 99.53
PRK05710299 glutamyl-Q tRNA(Asp) synthetase; Reviewed 99.53
TIGR00467 515 lysS_arch lysyl-tRNA synthetase, archaeal and spir 99.51
COG0008 472 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr 99.5
PRK04156 567 gltX glutamyl-tRNA synthetase; Provisional 99.49
cd00418230 GlxRS_core catalytic core domain of glutamyl-tRNA 99.49
PLN02610 801 probable methionyl-tRNA synthetase 99.47
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 99.28
PLN03233 523 putative glutamate-tRNA ligase; Provisional 99.26
KOG1149 524 consensus Glutamyl-tRNA synthetase (mitochondrial) 99.2
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 99.18
PTZ00402 601 glutamyl-tRNA synthetase; Provisional 99.18
cd00807238 GlnRS_core catalytic core domain of glutaminyl-tRN 99.18
PLN02943 958 aminoacyl-tRNA ligase 99.16
PLN02381 1066 valyl-tRNA synthetase 99.15
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 99.15
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 99.15
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 99.14
TIGR00463 560 gltX_arch glutamyl-tRNA synthetase, archaeal and e 99.13
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 99.12
PF00133 601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 99.12
PRK05347 554 glutaminyl-tRNA synthetase; Provisional 99.09
PLN02907 722 glutamate-tRNA ligase 99.09
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 99.07
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 99.05
PLN02563 963 aminoacyl-tRNA ligase 99.03
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 99.03
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 99.02
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 98.99
PLN02843 974 isoleucyl-tRNA synthetase 98.96
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 98.96
TIGR00440 522 glnS glutaminyl-tRNA synthetase. This protein is a 98.95
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 98.92
PLN02882 1159 aminoacyl-tRNA ligase 98.92
PLN02859 788 glutamine-tRNA ligase 98.9
PRK14703 771 glutaminyl-tRNA synthetase/YqeY domain fusion prot 98.89
PF01921360 tRNA-synt_1f: tRNA synthetases class I (K); InterP 98.87
KOG0436 578 consensus Methionyl-tRNA synthetase [Translation, 98.83
COG1384 521 LysS Lysyl-tRNA synthetase (class I) [Translation, 98.78
PTZ00437 574 glutaminyl-tRNA synthetase; Provisional 98.73
PLN02959 1084 aminoacyl-tRNA ligase 98.72
KOG0435 876 consensus Leucyl-tRNA synthetase [Translation, rib 98.66
KOG0432 995 consensus Valyl-tRNA synthetase [Translation, ribo 98.66
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 98.41
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 97.87
TIGR00233328 trpS tryptophanyl-tRNA synthetase. This model repr 97.45
cd00806280 TrpRS_core catalytic core domain of tryptophanyl-t 97.44
PRK08560329 tyrosyl-tRNA synthetase; Validated 97.36
PRK05912 408 tyrosyl-tRNA synthetase; Validated 97.34
PF00133601 tRNA-synt_1: tRNA synthetases class I (I, L, M and 97.27
PRK12285368 tryptophanyl-tRNA synthetase; Reviewed 97.27
PRK13354 410 tyrosyl-tRNA synthetase; Provisional 97.22
PRK05743 912 ileS isoleucyl-tRNA synthetase; Reviewed 97.15
PTZ00126383 tyrosyl-tRNA synthetase; Provisional 97.09
TIGR00392 861 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA 96.98
TIGR00234 377 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy 96.88
PRK06039 975 ileS isoleucyl-tRNA synthetase; Reviewed 96.8
COG0495 814 LeuS Leucyl-tRNA synthetase [Translation, ribosoma 96.78
TIGR00396 842 leuS_bact leucyl-tRNA synthetase, eubacterial and 96.78
PLN02843 974 isoleucyl-tRNA synthetase 96.76
PRK13804 961 ileS isoleucyl-tRNA synthetase; Provisional 96.69
PRK05729 874 valS valyl-tRNA synthetase; Reviewed 96.59
KOG0433 937 consensus Isoleucyl-tRNA synthetase [Translation, 96.52
COG0525 877 ValS Valyl-tRNA synthetase [Translation, ribosomal 96.39
PLN02563 963 aminoacyl-tRNA ligase 96.26
PTZ00427 1205 isoleucine-tRNA ligase, putative; Provisional 96.25
TIGR00395 938 leuS_arch leucyl-tRNA synthetase, archaeal and cyt 96.21
COG0060 933 IleS Isoleucyl-tRNA synthetase [Translation, ribos 96.09
PRK12300 897 leuS leucyl-tRNA synthetase; Reviewed 96.06
PLN02882 1159 aminoacyl-tRNA ligase 96.0
PLN02381 1066 valyl-tRNA synthetase 95.9
PRK14900 1052 valS valyl-tRNA synthetase; Provisional 95.81
COG0162 401 TyrS Tyrosyl-tRNA synthetase [Translation, ribosom 95.8
PLN02943 958 aminoacyl-tRNA ligase 95.74
cd00395273 Tyr_Trp_RS_core catalytic core domain of tyrosinyl 95.59
PLN02959 1084 aminoacyl-tRNA ligase 95.3
PTZ00419 995 valyl-tRNA synthetase-like protein; Provisional 95.18
KOG1147 712 consensus Glutamyl-tRNA synthetase [Translation, r 95.02
cd00805269 TyrRS_core catalytic core domain of tyrosinyl-tRNA 94.9
KOG0434 1070 consensus Isoleucyl-tRNA synthetase [Translation, 94.4
PRK12556332 tryptophanyl-tRNA synthetase; Provisional 93.75
PRK00390 805 leuS leucyl-tRNA synthetase; Validated 93.7
KOG1247 567 consensus Methionyl-tRNA synthetase [Translation, 93.28
PF00579292 tRNA-synt_1b: tRNA synthetases class I (W and Y); 93.26
COG0180314 TrpS Tryptophanyl-tRNA synthetase [Translation, ri 93.04
PRK12284 431 tryptophanyl-tRNA synthetase; Reviewed 92.2
KOG0437 1080 consensus Leucyl-tRNA synthetase [Translation, rib 91.68
PRK00927 333 tryptophanyl-tRNA synthetase; Reviewed 91.39
PRK12282 333 tryptophanyl-tRNA synthetase II; Reviewed 91.02
PLN02486383 aminoacyl-tRNA ligase 89.25
KOG0432 995 consensus Valyl-tRNA synthetase [Translation, ribo 88.88
KOG0433 937 consensus Isoleucyl-tRNA synthetase [Translation, 88.71
PRK12283398 tryptophanyl-tRNA synthetase; Reviewed 87.14
KOG1148 764 consensus Glutaminyl-tRNA synthetase [Translation, 83.94
>PLN02286 arginine-tRNA ligase Back     alignment and domain information 
Probab=100.00  E-value=7.7e-96  Score=777.26  Aligned_cols=386  Identities=81%  Similarity=1.306  Sum_probs=354.3

Q ss_pred             ccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCceeeeEEecCcEEEEeeCHHHHHHHHHH
Q 014355           34 RPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQK  112 (426)
Q Consensus        34 ~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~~v~vagpGfiNf~l~~~~~~~~l~~  112 (426)
                      .+.+++| +++|||||||+||.|||.++++++..++|++||++|+++|..+++|++|+++|||||||+|++.++.+.+..
T Consensus        22 ~~~i~~~~~~~~GD~a~n~a~~lak~~~~~~~~~k~P~~iA~~i~~~l~~~~~i~~v~vagpGfiNf~l~~~~l~~~l~~  101 (576)
T PLN02286         22 EPLVAACTNPKFGDYQCNNAMGLWSKLKGKGTSFKNPRAVAQAIVKNLPASEMIESTSVAGPGFVNVRLSASWLAKRIER  101 (576)
T ss_pred             CeEEecCCCCCCCCcccchHHHHHHHhCccccccCCHHHHHHHHHHhCccccceeeEEEcCCCeEEEEECHHHHHHHHHH
Confidence            3456655 689999999999999999998888889999999999999987778999999999999999999999999999


Q ss_pred             HHHcCCCCCCccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhC
Q 014355          113 MLVDGIETWAPKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKF  192 (426)
Q Consensus       113 ~l~~~~~~~~~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~  192 (426)
                      ++..+..++.+...+++|+||||||||||||||||+|||||||+|||||+++||+|+|+|||||||+||++++.++..++
T Consensus       102 ~~~~~~~~g~~~~~~~~v~VEfsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~Qi~~l~~~~~~~~  181 (576)
T PLN02286        102 MLVDGIDTWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGTQFGMLIEHLFEKF  181 (576)
T ss_pred             HHHcCcccCCCCCCCceEEEEecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHHHHHHHHHHHHHhc
Confidence            88776554433445689999999999999999999999999999999999999999999999999999999998887777


Q ss_pred             CCCCccccccHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCceeeecc
Q 014355          193 PNSEDANETAIGELQEFYRRSKNRFDSDPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLEEKGE  272 (426)
Q Consensus       193 ~~~~~~~~~~i~~l~~~y~~~~~~~~~~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd~~~E  272 (426)
                      |+.....+.++.++..+|+++++.++.+|++.+++++.+.+||+||++++++|++++++++.+|+++|++|||+||..+|
T Consensus       182 ~~~~~~~~~~i~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~gd~~~~~lw~~~~~~~~~~~~~~y~~l~V~fd~~ge  261 (576)
T PLN02286        182 PNWESVSDQAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISRREFEKVYQRLRVELEEKGE  261 (576)
T ss_pred             CcccccCcccHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecCc
Confidence            76544556789999889999999999999999999999999999999999999999999999999999999999987789


Q ss_pred             ccccCcHHHHHHHHHHCCCEEEeCCeEEEEecCCCCCeEEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCcccc
Q 014355          273 SFYNPYIPGVIDELSKQGLVEESQGARVIFIEGVNIPLIIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLH  352 (426)
Q Consensus       273 s~~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~g~~~d~Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~h  352 (426)
                      |+|.+.++++++.|+++|++|++|||+|+++++.++|+||+||||++||+|+|||||++|++.+++|++|||||++|++|
T Consensus       262 s~y~~~~~~vi~~L~~~g~~~e~dGa~~v~l~~~~~~~vl~ksDGt~tY~t~DIA~~~~k~~~~~~d~~IyVvg~~q~~h  341 (576)
T PLN02286        262 SFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQQH  341 (576)
T ss_pred             hhhhhhHHHHHHHHHHCCCEEeeCCceEeeccCCCCceEEEECCCchhhHHHHHHHHHHHHhccCCCEEEEEEeCcHHHH
Confidence            99998899999999999999999999999987766789999999999999999999999998789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHHHHhc
Q 014355          353 FDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIERG  421 (426)
Q Consensus       353 f~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i~~~~  421 (426)
                      |+||++++++|||.++  ++...+.|+.||||++.+|+|||||+|++|+|+|||+++.++|++.+.+|+
T Consensus       342 f~~v~~~l~~lG~~~~--~~~~~l~h~~~g~V~~~~g~kmStR~G~~v~L~dlldea~~~a~~~~~~~~  408 (576)
T PLN02286        342 FDMVFKAAKRAGWLPE--DTYPRLEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSRSKAALIERG  408 (576)
T ss_pred             HHHHHHHHHHcCCCcc--ccCCceEEEeeccEECCCCCcccCCCCCeeEHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999998421  113579999999998788889999999999999999999999999999985

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12451 arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG4426 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00456 argS arginyl-tRNA synthetase Back     alignment and domain information
>PRK01611 argS arginyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG1195 consensus Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases Back     alignment and domain information
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02946 cysteine-tRNA ligase Back     alignment and domain information
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated Back     alignment and domain information
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00435 cysS cysteinyl-tRNA synthetase Back     alignment and domain information
>PRK12418 cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase Back     alignment and domain information
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional Back     alignment and domain information
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases Back     alignment and domain information
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase Back     alignment and domain information
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases Back     alignment and domain information
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase Back     alignment and domain information
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases Back     alignment and domain information
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases Back     alignment and domain information
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family Back     alignment and domain information
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases Back     alignment and domain information
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK11893 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase Back     alignment and domain information
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00398 metG methionyl-tRNA synthetase Back     alignment and domain information
>PRK12558 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF03485 Arg_tRNA_synt_N: Arginyl tRNA synthetase N terminal domain; InterPro: IPR005148 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12267 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00133 metG methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12268 methionyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02224 methionine-tRNA ligase Back     alignment and domain information
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK13208 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase Back     alignment and domain information
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PLN02627 glutamyl-tRNA synthetase Back     alignment and domain information
>TIGR00422 valS valyl-tRNA synthetase Back     alignment and domain information
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase Back     alignment and domain information
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed Back     alignment and domain information
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete Back     alignment and domain information
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02610 probable methionyl-tRNA synthetase Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03233 putative glutamate-tRNA ligase; Provisional Back     alignment and domain information
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00402 glutamyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05347 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02907 glutamate-tRNA ligase Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>TIGR00440 glnS glutaminyl-tRNA synthetase Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02859 glutamine-tRNA ligase Back     alignment and domain information
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional Back     alignment and domain information
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00437 glutaminyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00233 trpS tryptophanyl-tRNA synthetase Back     alignment and domain information
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase Back     alignment and domain information
>PRK08560 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK05912 tyrosyl-tRNA synthetase; Validated Back     alignment and domain information
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK13354 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00126 tyrosyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00392 ileS isoleucyl-tRNA synthetase Back     alignment and domain information
>TIGR00234 tyrS tyrosyl-tRNA synthetase Back     alignment and domain information
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family Back     alignment and domain information
>PLN02843 isoleucyl-tRNA synthetase Back     alignment and domain information
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK05729 valS valyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02563 aminoacyl-tRNA ligase Back     alignment and domain information
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional Back     alignment and domain information
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family Back     alignment and domain information
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02882 aminoacyl-tRNA ligase Back     alignment and domain information
>PLN02381 valyl-tRNA synthetase Back     alignment and domain information
>PRK14900 valS valyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02943 aminoacyl-tRNA ligase Back     alignment and domain information
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase Back     alignment and domain information
>PLN02959 aminoacyl-tRNA ligase Back     alignment and domain information
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional Back     alignment and domain information
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase Back     alignment and domain information
>KOG0434 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12556 tryptophanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00390 leuS leucyl-tRNA synthetase; Validated Back     alignment and domain information
>KOG1247 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed Back     alignment and domain information
>PLN02486 aminoacyl-tRNA ligase Back     alignment and domain information
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
1bs2_A 607 Yeast Arginyl-Trna Synthetase Length = 607 9e-34
1iq0_A 592 Thermus Thermophilus Arginyl-Trna Synthetase Length 2e-12
2zue_A 629 Crystal Structure Of Pyrococcus Horikoshii Arginyl- 6e-12
3gdz_A109 Crystal Structure Of Arginyl-Trna Synthetase From K 4e-05
>pdb|1BS2|A Chain A, Yeast Arginyl-Trna Synthetase Length = 607 Back     alignment and structure 
Iteration: 1

 Score =  140 bits (354), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 116/367 (31%), Positives = 176/367 (47%), Gaps = 28/367 (7%)
Query: 67  KGPQPVGQAIM--KNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIETWAPK 124
           KG  P   A+   +  P  + +E     GP F+    +  ++AK +   ++   E +   
Sbjct: 79  KGANPKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSC 137
Query: 125 LRV--KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFG 182
             V  KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG
Sbjct: 138 KLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFG 197
Query: 183 MLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRF----DSDP---AFKERAQQAVVRLQ 235
           +L    FE++ N E   +  I  L + Y R         DS P   +   +A++   R++
Sbjct: 198 LL-AVGFERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRME 256
Query: 236 SGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-FYNPYIPGVIDELSKQGLVE 293
            G+ +  + W +  E S +++   Y RL +  +   GES      +   ID   ++GL  
Sbjct: 257 DGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTH 316
Query: 294 ESQGARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQ 350
           E +GA +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q 
Sbjct: 317 EDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQD 376
Query: 351 LHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAK 410
           LH    F   K+ G+  A D       HV FG+V G     + TR   VV L ++L+E K
Sbjct: 377 LHAAQFFEILKQMGFEWAKD-----LQHVNFGMVQG-----MSTRKGTVVFLDNILEETK 426
Query: 411 NRSKAVL 417
            +   V+
Sbjct: 427 EKMHEVM 433
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase Length = 592 Back     alignment and structure
>pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna Synthetase Complexed With Trna(Arg) And An Atp Analog (Anp) Length = 629 Back     alignment and structure
>pdb|3GDZ|A Chain A, Crystal Structure Of Arginyl-Trna Synthetase From Klebsiella Pneumoniae Subsp. Pneumoniae Length = 109 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
1f7u_A 607 Arginyl-tRNA synthetase; RNA-protein complex, amin 1e-162
2zue_A 629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 1e-129
1iq0_A 592 Arginyl-tRNA synthetase; riken structural genomics 1e-118
3gdz_A109 Arginyl-tRNA synthetase; klebsiella pneumoniae sub 1e-20
3fnr_A 464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607 Back     alignment and structure
 Score =  468 bits (1207), Expect = e-162
 Identities = 116/427 (27%), Positives = 187/427 (43%), Gaps = 36/427 (8%)

Query: 10  NVKRELEKVFDLALKATVPNETD-VRPLIAACT-AKFGDYQCNNAMGLWSKIKGKGTEFK 67
           N+   +       L      ++  + P +      + GD           +IKG      
Sbjct: 30  NIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPR---LRIKGAN---- 82

Query: 68  GPQPVGQAIMKNLPPSEMIESCSVAGPGFVNVVLSKNWMAKNIQKMLVDGIET--WAPKL 125
            P+ +     +  P  + +E     GP F+    +  ++AK +   ++   E       +
Sbjct: 83  -PKDLAVQWAEKFPCGDFLEKVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLV 140

Query: 126 RVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLI 185
             KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG+L 
Sbjct: 141 ENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLA 200

Query: 186 EYLFEKFPNSEDANETAIGELQEFYRRSKNRFD-------SDPAFKERAQQAVVRLQSGE 238
              FE++ N E   +  I  L + Y R     +        + +   +A++   R++ G+
Sbjct: 201 VG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGD 259

Query: 239 PKYHEAWAQICEISRKEFDKVYKRLRVDL-EEKGES-FYNPYIPGVIDELSKQGLVEESQ 296
            +  + W +  E S +++   Y RL +      GES      +   ID   ++GL  E +
Sbjct: 260 EEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDK 319

Query: 297 GARVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHF 353
           GA +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q LH 
Sbjct: 320 GAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHA 379

Query: 354 DMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRS 413
              F   K+ G+  A         HV FG+V G     + TR   VV L ++L+E K + 
Sbjct: 380 AQFFEILKQMGFEWAK-----DLQHVNFGMVQG-----MSTRKGTVVFLDNILEETKEKM 429

Query: 414 KAVLIER 420
             V+ + 
Sbjct: 430 HEVMKKN 436
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Length = 629 Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Length = 592 Back     alignment and structure
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Length = 464 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
1f7u_A 607 Arginyl-tRNA synthetase; RNA-protein complex, amin 100.0
2zue_A 629 Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase 100.0
1iq0_A 592 Arginyl-tRNA synthetase; riken structural genomics 100.0
3fnr_A 464 Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX 100.0
3tqo_A 462 Cysteinyl-tRNA synthetase; protein synthesis, liga 99.97
1li5_A 461 Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys 99.97
3sp1_A 501 Cysteinyl-tRNA synthetase; structural genomics, se 99.95
3c8z_A414 Cysteinyl-tRNA synthetase; cysteine ligase, rossma 99.95
4dlp_A 536 Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA 99.94
2d5b_A 500 Methionyl-tRNA synthetase; rossmann fold, class 1A 99.93
3kfl_A 564 Methionyl-tRNA synthetase; parasite, aminoacyl-tRN 99.93
2csx_A 497 Methionyl-tRNA synthetase; ligase, riken structura 99.91
3al0_C 592 Glutamyl-tRNA(Gln) amidotransferase subunit C, GL 99.91
3h99_A 560 Methionyl-tRNA synthetase; rossmann fold, aminoacy 99.91
2o5r_A 481 Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g 99.9
2x1l_A 524 Methionyl-tRNA synthetase; nucleotide-binding, pro 99.9
1nzj_A298 Hypothetical protein YADB; Zn cluster, glutamyl T- 99.86
1irx_A 523 Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin 99.86
3gdz_A109 Arginyl-tRNA synthetase; klebsiella pneumoniae sub 99.86
3afh_A 488 Glutamyl-tRNA synthetase 2; protein-substrate comp 99.84
1rqg_A 722 Methionyl-tRNA synthetase; translation, dimerizati 99.8
3u1f_A 542 Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta 99.75
4g6z_A 490 Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, 99.74
2cfo_A 492 Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s 99.72
1j09_A 468 Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r 99.7
2ja2_A 498 Glutamyl-tRNA synthetase; non-discriminating gluta 99.68
1gax_A 862 Valrs, valyl-tRNA synthetase; protein-RNA complex, 99.67
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 99.62
4gri_A 512 Glutamate--tRNA ligase; structural genomics, seatt 99.61
3aii_A 553 Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta 99.52
1qtq_A 553 GLNRS, protein (glutaminyl-tRNA synthetase); gluta 99.47
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 99.47
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 99.42
2hz7_A 851 Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c 99.41
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 99.37
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 99.22
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 99.12
2cyb_A323 Tyrosyl-tRNA synthetase; rossmann-fold, structural 98.28
2dlc_X 394 Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas 97.9
1n3l_A 372 Tyrosyl-tRNA synthetase; rossmann fold AS catalyti 97.88
1ffy_A 917 Isoleucyl-tRNA synthetase; protein-RNA complex, me 97.59
1ile_A 821 Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s 97.44
2zp1_A314 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 97.31
2g36_A340 Tryptophanyl-tRNA synthetase; TM0492, structural g 97.24
4arc_A 880 Leucine--tRNA ligase; ligase-RNA complex, nucleoti 97.02
2v0c_A 878 Aminoacyl-tRNA synthetase; ligase, nucleotide-bind 96.95
3p0j_A 690 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 96.8
1wkb_A 810 Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e 96.71
1wz2_A 967 Leucyl-tRNA synthetase; ligase, riken structural g 96.38
2pid_A356 Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase 95.24
2yxn_A322 Tyrosyl-tRNA synthetase; tRNA synthetases class I, 94.87
2jan_A 432 Tyrosyl-tRNA synthetase; protein biosynthesis, ami 94.65
1jil_A 420 Tyrrs, tyrosyl-tRNA synthetase; truncation, based 94.41
2ts1_A 419 Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 94.32
1h3f_A 432 Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy 94.28
2ip1_A 432 Tryptophanyl-tRNA synthetase; rossmann fold, struc 93.01
2el7_A 337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 92.5
2cya_A364 Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st 92.47
1y42_X392 Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR 92.06
2j5b_A348 Tyrosyl-tRNA synthetase; ligase, protein biosynthe 92.05
3hv0_A393 Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin 91.83
1r6u_A437 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 91.81
1r6t_A477 Tryptophanyl-tRNA synthetase; class IC tRNA synthe 91.79
3tzl_A322 Tryptophanyl-tRNA synthetase; structural genomics, 91.64
3vgj_A373 Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; 91.58
3hzr_A386 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str 91.41
3tze_A406 Tryptophanyl-tRNA synthetase; structural genomics, 91.24
3jxe_A 392 Tryptophanyl-tRNA synthetase; adenosine triphospha 90.75
3i05_A395 Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP 90.69
1i6k_A328 TRPRS, tryptophanyl-tRNA synthetase; class I tRNA 90.68
1yi8_B 351 Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2. 90.57
2yy5_A 348 Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt 90.45
3foc_A451 Tryptophanyl-tRNA synthetase; structural genomics, 88.0
2el7_A337 Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth 85.84
3a04_A372 Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR 85.27
2cyc_A375 Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy 85.16
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Back     alignment and structure
Probab=100.00  E-value=3.3e-85  Score=698.64  Aligned_cols=390  Identities=28%  Similarity=0.443  Sum_probs=339.9

Q ss_pred             hHHHHHHHHHHHHHHhcCCCCC-CCccccccc-CCCCccccchhhHHHHHhhcCCCCCCCChHHHHHHHHHhCCCCCcee
Q 014355           10 NVKRELEKVFDLALKATVPNET-DVRPLIAAC-TAKFGDYQCNNAMGLWSKIKGKGTEFKGPQPVGQAIMKNLPPSEMIE   87 (426)
Q Consensus        10 ~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~-~~~~GD~~t~~a~~lak~~k~~~~~~~~P~~iA~~l~~~l~~~~~i~   87 (426)
                      ++.+.+++.|.+++.+.+.... ...+.+++| +++||||+||+||  +|.+|      +||++||++|+++|+.++.|+
T Consensus        30 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~v~~~~~~~~GD~a~~~~~--~k~~~------~~P~~iA~~i~~~l~~~~~i~  101 (607)
T 1f7u_A           30 NIVDLMRNYISQELSKISGVDSSLIFPALEWTNTMERGDLLIPIPR--LRIKG------ANPKDLAVQWAEKFPCGDFLE  101 (607)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHGGGCEECSSGGGCSEEEEGGG--GCCTT------CCHHHHHHHHHHTCCCTTTEE
T ss_pred             cHHHHHHHHHHHHHHHHhCCCccccccceeCCCCCCCCchhhHHHH--HHhcC------CCHHHHHHHHHHhccccCcee
Confidence            4566666666666665533111 123346655 6799999998776  38777      999999999999998778899


Q ss_pred             eeEEecCcEEEEeeCHHHHHHH-HHHHHHcCCCCCC-ccCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCC
Q 014355           88 SCSVAGPGFVNVVLSKNWMAKN-IQKMLVDGIETWA-PKLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSN  165 (426)
Q Consensus        88 ~v~vagpGfiNf~l~~~~~~~~-l~~~l~~~~~~~~-~~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G  165 (426)
                      +++++|| ||||+|+++++.+. +..++..++.++. +.+.+++|+||||||||+|||||||+||+|+||+|+|+|+++|
T Consensus       102 ~ve~ag~-fiN~~l~~~~~~~~~~~~i~~~~~~~G~~~~~~~~~V~ve~~spN~~~plHvGHlRs~iiGD~laRil~~~G  180 (607)
T 1f7u_A          102 KVEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLG  180 (607)
T ss_dssp             EEEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEcCC-EEEEEECHHHHHHHHHHHHHhhhhhcCCCcccCCCeEEEEecCCCCCCCCccchHHHHHHHHHHHHHHHHcC
Confidence            9999996 99999999999975 4556666655443 3467899999999999999999999999999999999999999


Q ss_pred             CeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccHHHHHHHHHHhhcccCCC-------hHHHHHHHHHHHHHhcCC
Q 014355          166 VEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGE  238 (426)
Q Consensus       166 ~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i~~l~~~y~~~~~~~~~~-------~~~~~~a~~~~~~le~gd  238 (426)
                      |+|+++|||||||+||++|+.+ +.++++......+++.++.++|+++++.++.+       +.+.++|++.+.+||+||
T Consensus       181 ~~V~~~~~i~D~G~Q~~~l~~~-~~~~g~~~~~~~~~i~~l~~~Y~~~~~~~~~~~e~g~~~~~i~~~A~~~~~~le~gd  259 (607)
T 1f7u_A          181 WEVIRMNYLGDWGKQFGLLAVG-FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGD  259 (607)
T ss_dssp             CEEEEEEEEBCCSHHHHHHHHH-HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTC
T ss_pred             CCeeEEEeecCcchHHHHHHHH-HHHhCchhhccCCChHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999977 56676533333467889999999999998887       889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eecccccc-CcHHHHHHHHHHCCCEEEeCCeEEEEec--CCCCC-eEEE
Q 014355          239 PKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGESFYN-PYIPGVIDELSKQGLVEESQGARVIFIE--GVNIP-LIIV  313 (426)
Q Consensus       239 ~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es~~~-~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~~d-~Vl~  313 (426)
                      ++++++|++++++++++|+++|++|||+|| |.+||.|. +.+.++++.|+++|++|+++|++||+++  |++.| +|++
T Consensus       260 ~e~~~~w~~~~~~~~~~~~~~~~~L~V~fD~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~~g~~~d~~v~~  339 (607)
T 1f7u_A          260 EEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQ  339 (607)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcceeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecccCCCCCceeEe
Confidence            999999999999999999999999999996 78999887 7899999999999999999999999998  44554 8999


Q ss_pred             ecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccccHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCcccc
Q 014355          314 KSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLR  393 (426)
Q Consensus       314 ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmS  393 (426)
                      ||||++||.|+|||||+||+..+++|++|||||++|++||+|++++++++|+.     +...|.|++||+|.     |||
T Consensus       340 KsDG~~~Y~t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~-----~~~~~~Hv~fg~v~-----kMS  409 (607)
T 1f7u_A          340 KSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-----GMS  409 (607)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-----SCC
T ss_pred             ccCCCcCCCCCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCC-----cCcEEEEecccccc-----ccc
Confidence            99999999999999999999888999999999999999999999999999993     45579999999997     499


Q ss_pred             ccCCCceeHHHHHHHHHHHHHHHHHH
Q 014355          394 TRFSEVVRLVDLLDEAKNRSKAVLIE  419 (426)
Q Consensus       394 kR~G~~v~L~dLlde~~~~a~~~i~~  419 (426)
                      ||+|++|+|+||++++..+|.+.+++
T Consensus       410 kR~G~~v~L~dLlde~~~~a~~~~~~  435 (607)
T 1f7u_A          410 TRKGTVVFLDNILEETKEKMHEVMKK  435 (607)
T ss_dssp             GGGTCCCBHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999887764
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Back     alignment and structure
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Back     alignment and structure
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Back     alignment and structure
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Back     alignment and structure
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Back     alignment and structure
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Back     alignment and structure
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Back     alignment and structure
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Back     alignment and structure
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Back     alignment and structure
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Back     alignment and structure
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Back     alignment and structure
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Back     alignment and structure
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Back     alignment and structure
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima} Back     alignment and structure
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Back     alignment and structure
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A* Back     alignment and structure
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Back     alignment and structure
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B* Back     alignment and structure
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Back     alignment and structure
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A* Back     alignment and structure
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis} Back     alignment and structure
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus} Back     alignment and structure
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Back     alignment and structure
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A Back     alignment and structure
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi} Back     alignment and structure
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus} Back     alignment and structure
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A* Back     alignment and structure
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Back     alignment and structure
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Back     alignment and structure
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A* Back     alignment and structure
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima} Back     alignment and structure
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A* Back     alignment and structure
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Back     alignment and structure
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A* Back     alignment and structure
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Back     alignment and structure
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Back     alignment and structure
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A* Back     alignment and structure
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A* Back     alignment and structure
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} Back     alignment and structure
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* Back     alignment and structure
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A Back     alignment and structure
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* Back     alignment and structure
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A* Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Back     alignment and structure
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A Back     alignment and structure
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus} Back     alignment and structure
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0 Back     alignment and structure
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A Back     alignment and structure
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A Back     alignment and structure
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A* Back     alignment and structure
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum} Back     alignment and structure
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica} Back     alignment and structure
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi} Back     alignment and structure
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii} Back     alignment and structure
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0 Back     alignment and structure
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A Back     alignment and structure
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A* Back     alignment and structure
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae} Back     alignment and structure
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803} Back     alignment and structure
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus} Back     alignment and structure
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A* Back     alignment and structure
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 426
d1f7ua2348 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgR 1e-55
d1iq0a2370 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS 2e-46
d1irxa2317 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase { 2e-08
d1li5a2315 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR 4e-08
d1iq0a396 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), 7e-08
d2d5ba2348 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR 5e-05
d1pfva2350 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe 2e-04
d1ivsa4425 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase 7e-04
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  185 bits (470), Expect = 1e-55
 Identities = 96/305 (31%), Positives = 148/305 (48%), Gaps = 23/305 (7%)

Query: 128 KKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEY 187
           KK +++FSSPNIAK  H GHLRSTIIG  LA + E    EV+R N++GDWG QFG+L   
Sbjct: 8   KKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVG 67

Query: 188 LFEKFPNSEDANETAIGELQEFYRRSKNRFDSD-------PAFKERAQQAVVRLQSGEPK 240
            FE++ N E   +  I  L + Y R     + +        +   +A++   R++ G+ +
Sbjct: 68  -FERYGNEEALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEE 126

Query: 241 YHEAWAQICEISRKEFDKVYKRLRVDLEEKGESFYNPY--IPGVIDELSKQGLVEESQGA 298
             + W +  E S +++   Y RL +  +            +   ID   ++GL  E +GA
Sbjct: 127 ALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQVSKESMLKAIDLFKEKGLTHEDKGA 186

Query: 299 RVIFIEGVNIPL---IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQLHFDM 355
            +I +   N  L   I+ KSDG   Y + D+ A   R  +   + +IYV    Q LH   
Sbjct: 187 VLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQ 246

Query: 356 VFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKA 415
            F   K+ G+  A D       HV FG+V     + + TR   VV L ++L+E K +   
Sbjct: 247 FFEILKQMGFEWAKDLQ-----HVNFGMV-----QGMSTRKGTVVFLDNILEETKEKMHE 296

Query: 416 VLIER 420
           V+ + 
Sbjct: 297 VMKKN 301
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370 Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317 Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315 Back     information, alignment and structure
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]} Length = 96 Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348 Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350 Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
d1f7ua2348 Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa 100.0
d1iq0a2370 Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi 100.0
d1li5a2315 Cysteinyl-tRNA synthetase (CysRS) {Escherichia col 99.95
d1irxa2317 Class I lysyl-tRNA synthetase {Archaeon Pyrococcus 99.92
d2d5ba2348 Methionyl-tRNA synthetase (MetRS) {Thermus thermop 99.87
d1ivsa4 425 Valyl-tRNA synthetase (ValRS) {Thermus thermophilu 99.87
d1pfva2350 Methionyl-tRNA synthetase (MetRS) {Escherichia col 99.85
d1ffya3 450 Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus 99.79
d1ilea3 452 Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop 99.78
d1iq0a396 Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit 99.75
d1j09a2305 Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph 99.7
d1rqga2 361 Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys 99.63
d1nzja_286 Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c 99.61
d1f7ua3134 Arginyl-tRNA synthetase (ArgRS), N-terminal 'addit 99.49
d1gtra2331 Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co 99.28
d1h3na3 494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 99.14
d1h3fa1343 Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi 97.73
d1n3la_339 Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie 97.27
d1j1ua_306 Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc 95.88
d1h3na3494 Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil 95.11
>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-71  Score=556.22  Aligned_cols=286  Identities=33%  Similarity=0.505  Sum_probs=250.6

Q ss_pred             cCCCceEEEEecCCCcCCCccchhHHHHHHHHHHHHHHHHCCCeeEEecccCCchhHHHHHHHHHHhhCCCCCccccccH
Q 014355          124 KLRVKKAVVDFSSPNIAKEMHVGHLRSTIIGDSLARMLEFSNVEVLRRNHVGDWGTQFGMLIEYLFEKFPNSEDANETAI  203 (426)
Q Consensus       124 ~~~~~kV~VE~~SpNp~~plHiGHlRsaiiGD~Larll~~~G~~V~~~~yv~D~G~Q~~~l~~~~~~~~~~~~~~~~~~i  203 (426)
                      .+++++|+||||||||||||||||+||+||||+|||||+++||+|+|+|||||||+||++|+.++. +++........++
T Consensus         4 ~~~~kki~vE~~SaNpt~plHvGH~R~aiiGd~larlL~~~G~~V~re~yvnD~G~Qi~~l~~~~~-~~~~~~~~~~~~~   82 (348)
T d1f7ua2           4 LVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFE-RYGNEEALVKDPI   82 (348)
T ss_dssp             CSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHH-HHCCHHHHHHCHH
T ss_pred             CCCCCEEEEEecCCCCCCCcchhhhhhHHHHHHHHHHHHHCCCeEEEEEEECCchHHHHHHHHHHH-Hhccccccccccc
Confidence            468999999999999999999999999999999999999999999999999999999999998764 3333222233455


Q ss_pred             HHHHHHHHHhhcccCC-------ChHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCcee-eeccc-c
Q 014355          204 GELQEFYRRSKNRFDS-------DPAFKERAQQAVVRLQSGEPKYHEAWAQICEISRKEFDKVYKRLRVDLE-EKGES-F  274 (426)
Q Consensus       204 ~~l~~~y~~~~~~~~~-------~~~~~~~a~~~~~~le~gd~~~~~~w~~~~~~~~~~~~~~~~~Lgi~fd-~~~Es-~  274 (426)
                      .++.++|...++.++.       .+.+.+++++.+.+++++|++++++|+.+++.+++.++++|++|||+|| |++|| +
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~~~l~i~fD~~~~Es~~  162 (348)
T d1f7ua2          83 HHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEKYIDTYARLNIKYDVYSGESQV  162 (348)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGC
T ss_pred             hhHHHHHHHHHhhhcccchhhhhhhhhHhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccc
Confidence            6666777666654432       2456778999999999999999999999999999999999999999996 77886 5


Q ss_pred             ccCcHHHHHHHHHHCCCEEEeCCeEEEEec--CCCCCe-EEEecCCccccccccHHHHHHHHhhcCCCeEEEEeeCCccc
Q 014355          275 YNPYIPGVIDELSKQGLVEESQGARVIFIE--GVNIPL-IIVKSDGGFNYASTDLAALWYRLNEEKAEWIIYVTDVGQQL  351 (426)
Q Consensus       275 ~~~~v~~vi~~L~~~g~~~~~dGa~~~~~~--g~~~d~-Vl~ksDG~~tY~t~DiA~~~~r~~~~~~d~~i~V~g~~q~~  351 (426)
                      +.+...++++.|+++|++++++||+|++++  |++.|+ ||+||||++||+|+|||||.+|++.++||++|||||++|++
T Consensus       163 ~~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~~g~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~D~~I~V~g~dq~~  242 (348)
T d1f7ua2         163 SKESMLKAIDLFKEKGLTHEDKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDL  242 (348)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHH
T ss_pred             cccchHHHHHHHHhhccccccCCcccccchhhccccccceeccCCCccceecchHHhhhhhhhccCCCEEEEecccccch
Confidence            555667899999999999999999999987  566555 67899999999999999999999878999999999999999


Q ss_pred             cHHHHHHHHHHcCCCCCCCCCCCcEEEEEeEEEEcCCCccccccCCCceeHHHHHHHHHHHHHHHHHHh
Q 014355          352 HFDMVFSAAKRAGWLSADDSTYPKASHVGFGLVLGEDGKRLRTRFSEVVRLVDLLDEAKNRSKAVLIER  420 (426)
Q Consensus       352 hf~~~~~~~~~lg~~~~~~~~~~~~~Hv~~g~v~~~~g~kmSkR~G~~v~L~dLlde~~~~a~~~i~~~  420 (426)
                      ||+|+++++++||+.     ++..+.|+.||+|.     |||||+|++|+|+|||+|+.++|++.++++
T Consensus       243 ~~~~l~~~l~~lg~~-----~~~~~~h~~~g~v~-----kMStR~G~~i~l~dll~e~~~~a~~~~~~~  301 (348)
T d1f7ua2         243 HAAQFFEILKQMGFE-----WAKDLQHVNFGMVQ-----GMSTRKGTVVFLDNILEETKEKMHEVMKKN  301 (348)
T ss_dssp             HHHHHHHHHHHTTCG-----GGGGEEEECCCCEE-----SCCGGGTCCCBHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhhHHHHHHHhCCC-----cccceeeecCCccc-----cccccCCCceEHHHHHHHHHHHHHHHHHhc
Confidence            999999999999984     45679999999996     699999999999999999999999998765
>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iq0a3 d.67.2.1 (A:1-96) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f7ua3 d.67.2.1 (A:2-135) Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure