Citrus Sinensis ID: 014357

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
MAGRREKVQSIRGSRIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFYVNGKQDALDGFPVGSDW
ccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHccccEEEccccccccHHccccccHHHHHHHHHHHHHHHHccccEEEEEccEEEEccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccEEEEccccccccccccHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHcccccccccccccccc
ccccccccccccccHEEEEEEEEHHHHHHHHHHccccccccccccccHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHcccccccccccccHcHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHccccEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccEEEEccEEEEEccccHHccccccEEEEEccccccccccccccccccccccccccccccccEEccEEEEEcccHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccccccEEEEEccHHHcccccEEEEEEEccHHHcccccEEEEcccccccHHHHHHHHHHHHccccHHcccccccccc
MAGRREKVQSIRGSRIAIAIVIGVLVGCVFAflfphgffssnlpiqdrQLVKKNvqagsscespervNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGeqhkvgpfgtvkalrtnptvvpdesvnpRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDdqtaeycktndipvyqrdpdegIDSIArkggnhavsgLKFRVLREFLQLDYSVLLsdidivflqnpfeylyrdsdvesmtdghnnmtaygyndvfdepamgwaRYAHTMRIWVFnsgffyirptipsiELLDRVADRLGKEKawdqavfneelffpshpgyyglhasKRVMDFYLFMNSKVLFKTVRkdanlkklkpvvvhvnyhpdkfpRMLAIVEFYVNgkqdaldgfpvgsdw
magrrekvqsirgsriAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQagsscespervnMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEqhkvgpfgtvkalrtnptvvpdesvnprLAKILEEVAVGKELIVALANSNVKSMLEVWStnikrvgiTNYLVVALDDQTAeycktndipvyqrDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFKTVRkdanlkklkpvvvHVNYHPDKFPRMLAIVEFYVNGKQDALDGFPVGSDW
MAGRREKVQSIRGSRiaiaivigvlvgcvFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFYVNGKQDALDGFPVGSDW
************GSRIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDR**************************************************************VLGEQHKVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFYVNGKQDAL*********
****************AIAIVIGVLVGCVFAFLFPHGFFSS*****************************************************************************************************LAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFYVNGKQDALDGFPV****
**********IRGSRIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFYVNGKQDALDGFPVGSDW
***********RGSRIAIAIVIGVLVGCVFAFLFPHGFFS************************ERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFYVNGKQDALDGFP*****
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAGRREKVQSIRGSRIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKKNVQAGSSCESPERxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVMVLGEQHKVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFYVNGKQDALDGFPVGSDW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
225458348434 PREDICTED: uncharacterized protein LOC10 1.0 0.981 0.813 0.0
302142458446 unnamed protein product [Vitis vinifera] 1.0 0.955 0.813 0.0
359492122428 PREDICTED: uncharacterized protein LOC10 0.988 0.983 0.801 0.0
255538576430 conserved hypothetical protein [Ricinus 0.995 0.986 0.795 0.0
224136554419 predicted protein [Populus trichocarpa] 0.971 0.988 0.761 0.0
356545279438 PREDICTED: uncharacterized protein LOC10 1.0 0.972 0.739 0.0
224103449435 predicted protein [Populus trichocarpa] 0.997 0.977 0.735 0.0
118484315435 unknown [Populus trichocarpa] 0.997 0.977 0.733 0.0
297850324428 hypothetical protein ARALYDRAFT_472163 [ 0.995 0.990 0.757 0.0
224067389429 predicted protein [Populus trichocarpa] 0.992 0.986 0.769 0.0
>gi|225458348|ref|XP_002283221.1| PREDICTED: uncharacterized protein LOC100255856 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  738 bits (1906), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/434 (81%), Positives = 387/434 (89%), Gaps = 8/434 (1%)

Query: 1   MAGRREKV-------QSIRGSRIAIAIVIGVLVGCVFAFLFPHGFFSSNLPIQDRQLVKK 53
           MAGRR+ +        S+RGSRIA+AI IGVL+GCVFAFL+PHG F S+  I + +LVK 
Sbjct: 1   MAGRRDGLLTRNSNGNSLRGSRIAVAITIGVLLGCVFAFLYPHGLFRSDPQIINPRLVKS 60

Query: 54  NVQAGS-SCESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVL 112
           N+Q GS SCESPER+ MLKSDI +L+EKNA+L+KQVR+LT KLRLAEQGKDQAQKQ MVL
Sbjct: 61  NLQVGSPSCESPERLKMLKSDIVALSEKNADLKKQVRELTEKLRLAEQGKDQAQKQFMVL 120

Query: 113 GEQHKVGPFGTVKALRTNPTVVPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVW 172
           GEQHK GPFGTVK+LRTNPT++PDESVNPRLAKILEEVAV KELIVALANSNVKS LEVW
Sbjct: 121 GEQHKAGPFGTVKSLRTNPTLIPDESVNPRLAKILEEVAVSKELIVALANSNVKSSLEVW 180

Query: 173 STNIKRVGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRV 232
             NIKRVGI NYLVVALDD    +CK+N++PVY+RDPDEGIDS+AR GGNHAVSGLKF++
Sbjct: 181 FANIKRVGIPNYLVVALDDDIENFCKSNNVPVYKRDPDEGIDSVARSGGNHAVSGLKFQI 240

Query: 233 LREFLQLDYSVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGW 292
           LREFLQL YSVLLSDIDIV+LQNPF+YLYRDSDVESMTDGHNN TAYGYNDVFDEPAMGW
Sbjct: 241 LREFLQLGYSVLLSDIDIVYLQNPFDYLYRDSDVESMTDGHNNYTAYGYNDVFDEPAMGW 300

Query: 293 ARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYY 352
           ARYAHTMRIWV+NSGFFYIRPTIPSIELLDRVADRL   KAWDQAVFNEELFFPSHPGY 
Sbjct: 301 ARYAHTMRIWVYNSGFFYIRPTIPSIELLDRVADRLAHSKAWDQAVFNEELFFPSHPGYT 360

Query: 353 GLHASKRVMDFYLFMNSKVLFKTVRKDANLKKLKPVVVHVNYHPDKFPRMLAIVEFYVNG 412
           GLHAS+R MDFYLFMNSKVLFKTVRKDA LKKLKPV+VHVNYHPDK  RM A+VEFYVNG
Sbjct: 361 GLHASRRTMDFYLFMNSKVLFKTVRKDAKLKKLKPVIVHVNYHPDKLSRMKAVVEFYVNG 420

Query: 413 KQDALDGFPVGSDW 426
           KQDALD FP GS+W
Sbjct: 421 KQDALDPFPDGSNW 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302142458|emb|CBI19661.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492122|ref|XP_003634366.1| PREDICTED: uncharacterized protein LOC100255856 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255538576|ref|XP_002510353.1| conserved hypothetical protein [Ricinus communis] gi|223551054|gb|EEF52540.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224136554|ref|XP_002326889.1| predicted protein [Populus trichocarpa] gi|222835204|gb|EEE73639.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356545279|ref|XP_003541071.1| PREDICTED: uncharacterized protein LOC100804189 [Glycine max] Back     alignment and taxonomy information
>gi|224103449|ref|XP_002313061.1| predicted protein [Populus trichocarpa] gi|222849469|gb|EEE87016.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484315|gb|ABK94035.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297850324|ref|XP_002893043.1| hypothetical protein ARALYDRAFT_472163 [Arabidopsis lyrata subsp. lyrata] gi|297338885|gb|EFH69302.1| hypothetical protein ARALYDRAFT_472163 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224067389|ref|XP_002302478.1| predicted protein [Populus trichocarpa] gi|222844204|gb|EEE81751.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
TAIR|locus:2016487428 RRA3 "reduced residual arabino 0.997 0.992 0.726 1.8e-165
TAIR|locus:2037248428 RRA2 "REDUCED RESIDUAL ARABINO 0.997 0.992 0.691 4.6e-160
TAIR|locus:2037273402 RRA1 "REDUCED RESIDUAL ARABINO 0.835 0.885 0.671 3.2e-129
TAIR|locus:2026831537 RAY1 "REDUCED ARABINOSE YARIV 0.448 0.355 0.276 9.2e-09
TAIR|locus:2058769 644 XEG113 "xyloglucanase 113" [Ar 0.528 0.349 0.238 3.3e-07
TAIR|locus:2133457367 RGXT2 "rhamnogalacturonan xylo 0.558 0.648 0.261 4.6e-06
TAIR|locus:2133392361 RGXT1 "rhamnogalacturonan xylo 0.551 0.650 0.252 3.5e-05
TAIR|locus:2124968360 MGP4 "male gametophyte defecti 0.549 0.65 0.257 7.4e-05
TAIR|locus:2016487 RRA3 "reduced residual arabinose 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1610 (571.8 bits), Expect = 1.8e-165, P = 1.8e-165
 Identities = 311/428 (72%), Positives = 354/428 (82%)

Query:     1 MAGRREKVQSIRGSRXXXXXXXXXXXXXXFAFLFPHGFFSSNLPIQ-DRQLVKKNVQAGS 59
             MAGRR++ Q +RGSR               A LFP+GFF+S+  ++    L K + Q GS
Sbjct:     1 MAGRRDRSQQLRGSRIAIAILIGIFIGCVCAVLFPYGFFNSSSSLKASEHLSKSSNQVGS 60

Query:    60 S-CESPERVNMLKSDIASLTEKNAELQKQVRQLTAKLRLAEQGKDQAQKQVMVLGEQHKV 118
             S CESPERV MLKSD  +L+EKNAEL+KQVR+LT KLRLAEQG D A+KQV+ LG Q K 
Sbjct:    61 SACESPERVKMLKSDFVTLSEKNAELKKQVRELTEKLRLAEQGSDNARKQVLALGTQIKA 120

Query:   119 GPFGTVKALRTNPTVVPDESVNPRLAKILEEVAVGKELIVALANSNVKSMLEVWSTNIKR 178
             GPFGTVK+LRTNPT++PDES+NPRLAKILEE+AV KE+IVALAN+NVK+MLEV   +IKR
Sbjct:   121 GPFGTVKSLRTNPTILPDESINPRLAKILEEIAVDKEVIVALANANVKAMLEVQIASIKR 180

Query:   179 VGITNYLVVALDDQTAEYCKTNDIPVYQRDPDEGIDSIARKGGNHAVSGLKFRVLREFLQ 238
             VGITNYLVVALDD     CK ND+  Y+RDPD+ +D++ + GGNHAVSGLKFRVLREFLQ
Sbjct:   181 VGITNYLVVALDDYIENLCKENDVAYYKRDPDKDVDTVGKTGGNHAVSGLKFRVLREFLQ 240

Query:   239 LDYSVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHT 298
             L Y VLLSD+DIVFLQNPF +LYRDSDVESM+DGH+N TAYG+NDVFDEPAMGWARYAHT
Sbjct:   241 LGYGVLLSDVDIVFLQNPFSHLYRDSDVESMSDGHDNHTAYGFNDVFDEPAMGWARYAHT 300

Query:   299 MRIWVFNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELFFPSHPGYYGLHASK 358
             MRIWVFNSGFFY+RPTIPSIELLDRVADRL K K WDQAVFNEELF+PSHP Y  LHASK
Sbjct:   301 MRIWVFNSGFFYLRPTIPSIELLDRVADRLSKAKVWDQAVFNEELFYPSHPEYTALHASK 360

Query:   359 RVMDFYLFMNSKVLFKTVRKDANLKK-LKPVVVHVNYHPDKFPRMLAIVEFYVNGKQDAL 417
             RVMD Y FMNSKVLFKTVRK+  LKK +KPV+VHVNYHPDK  RM A+VEFYVNGKQDAL
Sbjct:   361 RVMDMYEFMNSKVLFKTVRKNHELKKKVKPVIVHVNYHPDKLNRMQAVVEFYVNGKQDAL 420

Query:   418 DGFPVGSD 425
             D FP GS+
Sbjct:   421 DSFPDGSE 428
GO:0005783 "endoplasmic reticulum" evidence=IEA
GO:0080147 "root hair cell development" evidence=IMP
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2037248 RRA2 "REDUCED RESIDUAL ARABINOSE 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037273 RRA1 "REDUCED RESIDUAL ARABINOSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026831 RAY1 "REDUCED ARABINOSE YARIV 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058769 XEG113 "xyloglucanase 113" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133457 RGXT2 "rhamnogalacturonan xylosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133392 RGXT1 "rhamnogalacturonan xylosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124968 MGP4 "male gametophyte defective 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
pfam03407208 pfam03407, Nucleotid_trans, Nucleotide-diphospho-s 1e-53
>gnl|CDD|217539 pfam03407, Nucleotid_trans, Nucleotide-diphospho-sugar transferase Back     alignment and domain information 
 Score =  177 bits (451), Expect = 1e-53
 Identities = 67/225 (29%), Positives = 94/225 (41%), Gaps = 33/225 (14%)

Query: 181 ITNYLVVALDDQTAEYCKTNDIPVYQRDPDEG----IDSIARKGGNHAVSGLKFRVLREF 236
           + N LVVALD++  + CK     +     D       D +        +S  + R+L E 
Sbjct: 3   LENLLVVALDEEAYKRCKELGPHICYLLSDVKDVSKKDFVFGSKTYLKMSWRRVRLLLEL 62

Query: 237 LQLDYSVLLSDIDIVFLQNPFEYLY-RDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARY 295
           L+L Y+ + SD+D+V+L+NPF  LY  D+D+   +D ++  TA G               
Sbjct: 63  LELGYNFIFSDVDVVWLRNPFPLLYLPDADIIISSDNYDGTTADGLK------------- 109

Query: 296 AHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLGKE-KAWDQAVFNEELFFPSHPGYYGL 354
                    N GFFY+RPT  SI L  + A+RL       DQ VFN  L   +      L
Sbjct: 110 ------NWLNGGFFYVRPTNRSIALFKKWAERLLTYPGLHDQDVFNYLLREGAAG---EL 160

Query: 355 HASKRVMDFYLFMNSKVLFKTVRKDANL-KKLKPVVVHVNYHPDK 398
               R +D  LF      F   R    +    KPV VH N     
Sbjct: 161 GYKCRFLDTALFGG----FCQSRDWKYVQTDKKPVAVHANCCSGT 201

Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases. Length = 208

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 426
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 98.15
PLN00176333 galactinol synthase 98.08
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 97.91
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 97.83
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 97.72
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 97.63
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 97.34
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 96.94
PLN03181453 glycosyltransferase; Provisional 96.71
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 96.57
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 96.41
PRK00888105 ftsB cell division protein FtsB; Reviewed 96.09
PF06295128 DUF1043: Protein of unknown function (DUF1043); In 96.0
PRK11677134 hypothetical protein; Provisional 95.58
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 95.48
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 95.21
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 94.67
PF0630568 DUF1049: Protein of unknown function (DUF1049); In 94.54
PF11382308 DUF3186: Protein of unknown function (DUF3186); In 94.37
PRK1539678 murein lipoprotein; Provisional 94.32
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 94.3
PHA02047101 phage lambda Rz1-like protein 94.23
PLN02742534 Probable galacturonosyltransferase 93.78
PF0630568 DUF1049: Protein of unknown function (DUF1049); In 93.56
PLN02523559 galacturonosyltransferase 93.47
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 93.26
PLN02829639 Probable galacturonosyltransferase 93.24
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 93.22
PF1088387 DUF2681: Protein of unknown function (DUF2681); In 92.81
PF1273274 YtxH: YtxH-like protein; InterPro: IPR024623 This 92.81
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 92.29
PLN02718603 Probable galacturonosyltransferase 92.14
PLN02769629 Probable galacturonosyltransferase 91.61
TIGR0220985 ftsL_broad cell division protein FtsL. This model 91.08
PF0472856 LPP: Lipoprotein leucine-zipper; InterPro: IPR0068 90.81
TIGR00219283 mreC rod shape-determining protein MreC. MreC (mur 90.8
PLN02867535 Probable galacturonosyltransferase 90.79
PF03314222 DUF273: Protein of unknown function, DUF273; Inter 90.67
PF11853 489 DUF3373: Protein of unknown function (DUF3373); In 90.37
PRK10884206 SH3 domain-containing protein; Provisional 89.94
PF1147160 Sugarporin_N: Maltoporin periplasmic N-terminal ex 89.85
COG3879247 Uncharacterized protein conserved in bacteria [Fun 89.69
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 89.21
PF14362301 DUF4407: Domain of unknown function (DUF4407) 89.19
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 88.77
smart0033865 BRLZ basic region leucin zipper. 88.76
PRK14872337 rod shape-determining protein MreC; Provisional 88.54
PF0497780 DivIC: Septum formation initiator; InterPro: IPR00 88.21
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 88.02
PRK13729475 conjugal transfer pilus assembly protein TraB; Pro 87.62
PF07047134 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IP 87.59
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 87.51
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 87.3
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 87.12
PRK13922276 rod shape-determining protein MreC; Provisional 86.98
COG2919117 Septum formation initiator [Cell division and chro 86.0
TIGR0244965 conserved hypothetical protein TIGR02449. Members 85.95
KOG4748364 consensus Subunit of Golgi mannosyltransferase com 85.16
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 85.09
COG4980115 GvpP Gas vesicle protein [General function predict 84.77
PRK10803263 tol-pal system protein YbgF; Provisional 84.49
PRK1542279 septal ring assembly protein ZapB; Provisional 84.22
PF15058200 Speriolin_N: Speriolin N terminus 84.17
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 84.02
PRK13169110 DNA replication intiation control protein YabA; Re 83.62
TIGR00998334 8a0101 efflux pump membrane protein (multidrug res 82.65
PF03962188 Mnd1: Mnd1 family; InterPro: IPR005647 This family 82.62
PF0537755 FlaC_arch: Flagella accessory protein C (FlaC); In 82.61
PF0610390 DUF948: Bacterial protein of unknown function (DUF 82.41
COG3883265 Uncharacterized protein conserved in bacteria [Fun 82.2
PF0497780 DivIC: Septum formation initiator; InterPro: IPR00 81.98
COG307479 Uncharacterized protein conserved in bacteria [Fun 81.85
PRK00888105 ftsB cell division protein FtsB; Reviewed 81.83
COG4839120 FtsL Protein required for the initiation of cell d 81.71
PF0771654 bZIP_2: Basic region leucine zipper; InterPro: IPR 81.38
COG3105138 Uncharacterized protein conserved in bacteria [Fun 81.26
PRK15136390 multidrug efflux system protein EmrA; Provisional 81.18
PF05529192 Bap31: B-cell receptor-associated protein 31-like 80.93
PRK0997385 putative outer membrane lipoprotein; Provisional 80.87
PF04880166 NUDE_C: NUDE protein, C-terminal conserved region; 80.83
KOG2264 907 consensus Exostosin EXT1L [Signal transduction mec 80.63
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-39  Score=305.74  Aligned_cols=200  Identities=33%  Similarity=0.458  Sum_probs=162.9

Q ss_pred             CCcEEEEEeCHHHHHHHHHCCCCEEEeCCC--CC--cccccccCcchhhHhhHHHHHHHHHhcCcceEEecccEEeecCc
Q 014357          181 ITNYLVVALDDQTAEYCKTNDIPVYQRDPD--EG--IDSIARKGGNHAVSGLKFRVLREFLQLDYSVLLSDIDIVFLQNP  256 (426)
Q Consensus       181 i~n~lVvAlD~~a~~~c~~~g~~c~~~~~~--~g--~d~~~gs~~f~~m~~~K~~~l~~vL~lGy~VL~sDvDVVWlrnP  256 (426)
                      ++|++|+|+|+++++.|+++|++|+.+...  ..  ....+++..|+.++|.|+.+++++|++||+|+++|+||||+|||
T Consensus         3 ~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp   82 (212)
T PF03407_consen    3 IDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDP   82 (212)
T ss_pred             cccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCc
Confidence            689999999999999999999999887654  11  33556889999999999999999999999999999999999999


Q ss_pred             cccc-ccCCcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccceecceeEEEEecChhHHHHHHHHHHHhC-CCCCC
Q 014357          257 FEYL-YRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGFFYIRPTIPSIELLDRVADRLG-KEKAW  334 (426)
Q Consensus       257 ~~~~-~~daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~~~NtGf~y~R~T~~s~~fl~~w~~rl~-~~~~~  334 (426)
                      +++| +.++|+++++|+.......+                   ....+|+||||+|||++|++|++.|..++. .++.+
T Consensus        83 ~~~~~~~~~Di~~~~d~~~~~~~~~-------------------~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~  143 (212)
T PF03407_consen   83 LPYFENPDADILFSSDGWDGTNSDR-------------------NGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCW  143 (212)
T ss_pred             HHhhccCCCceEEecCCCcccchhh-------------------cCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcc
Confidence            9999 78999999999875321110                   011479999999999999999999988876 45778


Q ss_pred             chHHHHHHhcCCCCCCCCCccceEEeccccccCCCceehhhcchhhhcc-CCCeEEEEeCCc---cChHHHH
Q 014357          335 DQAVFNEELFFPSHPGYYGLHASKRVMDFYLFMNSKVLFKTVRKDANLK-KLKPVVVHVNYH---PDKFPRM  402 (426)
Q Consensus       335 DQ~afN~ll~~ps~~~~~gl~v~v~~Lp~~~F~nG~~~F~~~R~~~~~~-~~~P~iVH~N~~---~~K~~Rl  402 (426)
                      ||.+||+++...... .  .++.+++||..+||||+.||.+.+.+.... +.+||+||+||+   ++|++||
T Consensus       144 DQ~~~n~~l~~~~~~-~--~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~~vH~n~~~g~~~K~~~~  212 (212)
T PF03407_consen  144 DQQAFNELLREQAAR-Y--GGLRVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPYIVHANCCDGKEGKRQRF  212 (212)
T ss_pred             hHHHHHHHHHhcccC-C--cCcEEEEeCHHHeeccccceeecchhhhhccccccceEEEcCCCChHhHHhhC
Confidence            999999999742211 1  236789999999999999998733333332 589999999998   5566654

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>PRK11677 hypothetical protein; Provisional Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function Back     alignment and domain information
>PRK15396 murein lipoprotein; Provisional Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PHA02047 phage lambda Rz1-like protein Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function Back     alignment and domain information
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>TIGR02209 ftsL_broad cell division protein FtsL Back     alignment and domain information
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP Back     alignment and domain information
>TIGR00219 mreC rod shape-determining protein MreC Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function Back     alignment and domain information
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1 Back     alignment and domain information
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF14362 DUF4407: Domain of unknown function (DUF4407) Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>PRK14872 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation [] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional Back     alignment and domain information
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PRK13922 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>COG2919 Septum formation initiator [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>COG4980 GvpP Gas vesicle protein [General function prediction only] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PF15058 Speriolin_N: Speriolin N terminus Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A) Back     alignment and domain information
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct [] Back     alignment and domain information
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins Back     alignment and domain information
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation [] Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning] Back     alignment and domain information
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization Back     alignment and domain information
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK15136 multidrug efflux system protein EmrA; Provisional Back     alignment and domain information
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8 Back     alignment and domain information
>PRK09973 putative outer membrane lipoprotein; Provisional Back     alignment and domain information
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins Back     alignment and domain information
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 98.01
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 97.98
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 97.13
3tzt_A276 Glycosyl transferase family 8; structural genomics 96.91
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 94.43
3cve_A72 Homer protein homolog 1; coiled coil, alternative 93.59
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 93.23
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 93.09
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 92.87
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 92.25
1go4_E100 MAD1 (mitotic arrest deficient)-like 1; mitotic sp 92.24
3cvf_A79 Homer-3, homer protein homolog 3; coiled coil, alt 92.19
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 92.1
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 91.5
1kd8_B36 GABH BLL, GCN4 acid base heterodimer base-D12LA16L 91.31
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 90.62
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 90.43
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 90.1
2oxj_A34 Hybrid alpha/beta peptide based on the GCN4-P1 Se 89.36
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 89.3
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 89.03
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 88.9
1kd8_A36 GABH AIV, GCN4 acid base heterodimer acid-D12IA16V 88.63
4dzn_A33 Coiled-coil peptide CC-PIL; de novo protein; HET: 87.3
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 87.25
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 86.62
1g6u_A48 Domain swapped dimer; designed three helix bundle, 86.12
1p9i_A31 Cortexillin I/GCN4 hybrid peptide; coiled-coil, un 85.36
1jcd_A52 Major outer membrane lipoprotein; protein folding, 84.81
3gp4_A142 Transcriptional regulator, MERR family; structural 84.19
2wuj_A57 Septum site-determining protein diviva; bacterial 84.05
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 83.59
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 83.3
4e61_A106 Protein BIM1; EB1-like motif, coiled-coil, spindle 83.0
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 82.82
3he4_B46 Synzip5; heterodimeric coiled-coil, de novo protei 82.75
3m91_A51 Proteasome-associated ATPase; coil COIL alpha heli 82.64
1a93_B34 MAX protein, coiled coil, LZ; leucine zipper, 2D s 82.38
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 80.48
3he5_A49 Synzip1; heterodimeric coiled-coil, de novo protei 80.48
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=98.01  E-value=0.00011  Score=71.14  Aligned_cols=160  Identities=23%  Similarity=0.309  Sum_probs=98.3

Q ss_pred             CeEEEE-EcCcchHHHHHHHHHHHHHcCCC-cEEEEEe---CHHHHHHHHHCCCCEEEeCCCCCcccc----cccCcchh
Q 014357          154 KELIVA-LANSNVKSMLEVWSTNIKRVGIT-NYLVVAL---DDQTAEYCKTNDIPVYQRDPDEGIDSI----ARKGGNHA  224 (426)
Q Consensus       154 ~~VIvt-~~N~~~~d~~~Nwl~slkr~Gi~-n~lVvAl---D~~a~~~c~~~g~~c~~~~~~~g~d~~----~gs~~f~~  224 (426)
                      +...|| .+|.+|..-+...+.|+++.|-+ .++|+..   +++..+.+++.+..+...+.....+..    .+.+.+ .
T Consensus         4 ~~AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~-~   82 (263)
T 3u2u_A            4 DQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPEL-G   82 (263)
T ss_dssp             TEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTG-G
T ss_pred             ceEEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcch-h
Confidence            444455 56889999999999999998854 3444443   457777888887666655432211110    011222 3


Q ss_pred             hHhhHHHHHHHHHhcCc-ceEEecccEEeecCcccccccCCcEeeccCCCCCCcccCCCCCCCCCccchhhhccccccee
Q 014357          225 VSGLKFRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWV  303 (426)
Q Consensus       225 m~~~K~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~~  303 (426)
                      .++.|+.+-. ++  .| .||+.|+|++.++|.-+.|..+ .+....|                +  +|+.        .
T Consensus        83 ~~~~kl~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~~-~~aA~~d----------------~--~~~~--------~  132 (263)
T 3u2u_A           83 VTLTKLHCWS-LT--QYSKCVFMDADTLVLANIDDLFDRE-ELSAAPD----------------P--GWPD--------C  132 (263)
T ss_dssp             GGGGGGGGGG-CT--TCSEEEEECTTEEECSCCGGGGGSC-SSEEEEC----------------T--TSTT--------S
T ss_pred             HHhHHHHhcc-cc--CcceEEEEcCCEeeccCHHHHhCCC-cceEecc----------------C--CCCc--------c
Confidence            4555655543 22  46 5999999999999988777644 2222222                1  2332        4


Q ss_pred             cceeEEEEecChhHHHHHHHHHHHhCCCCCCchHHHHHHhc
Q 014357          304 FNSGFFYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELF  344 (426)
Q Consensus       304 ~NtGf~y~R~T~~s~~fl~~w~~rl~~~~~~DQ~afN~ll~  344 (426)
                      +|+|+|.+.|+...-+-+-+.......-...||.++|.++.
T Consensus       133 fNsGv~li~p~~~~~~~l~~~~~~~~~~~~~DQd~LN~~f~  173 (263)
T 3u2u_A          133 FNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFS  173 (263)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHHHHHCCTTSSHHHHHHHHTT
T ss_pred             ccCeEEEEcccHHHHHHHHHHHHhcCCCCcccHHHHHHHhc
Confidence            89999999997544432323222223334679999999884
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus} Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1 Back     alignment and structure
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens} Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Back     alignment and structure
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A* Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A Back     alignment and structure
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1 Back     alignment and structure
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1 Back     alignment and structure
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A Back     alignment and structure
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str} Back     alignment and structure
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae} Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene} Back     alignment and structure
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A Back     alignment and structure
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 98.37
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 98.0
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.37  E-value=2.6e-06  Score=78.83  Aligned_cols=158  Identities=22%  Similarity=0.234  Sum_probs=105.0

Q ss_pred             EEEEcCcchHHHHHHHHHHHHHcCCC-cEEEEEeC---HHHHHHHHHCCCCEEEeCCCCCccc---ccccCcchhhHhhH
Q 014357          157 IVALANSNVKSMLEVWSTNIKRVGIT-NYLVVALD---DQTAEYCKTNDIPVYQRDPDEGIDS---IARKGGNHAVSGLK  229 (426)
Q Consensus       157 Ivt~~N~~~~d~~~Nwl~slkr~Gi~-n~lVvAlD---~~a~~~c~~~g~~c~~~~~~~g~d~---~~gs~~f~~m~~~K  229 (426)
                      |...+|.+|..-+...+.||++.|-. .++|+..+   ++..+.+++.+..+...+.....+.   ......+...+..|
T Consensus         7 vt~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~ty~K   86 (263)
T d1ll2a_           7 VTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTK   86 (263)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGGHHHHHH
T ss_pred             EEEEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccchhhhHH
Confidence            33457999999999999999999854 44555543   6777888888887777654321111   11122344455667


Q ss_pred             HHHHHHHHhcCc-ceEEecccEEeecCcccccccCCcEeeccCCCCCCcccCCCCCCCCCccchhhhcccccceecceeE
Q 014357          230 FRVLREFLQLDY-SVLLSDIDIVFLQNPFEYLYRDSDVESMTDGHNNMTAYGYNDVFDEPAMGWARYAHTMRIWVFNSGF  308 (426)
Q Consensus       230 ~~~l~~vL~lGy-~VL~sDvDVVWlrnP~~~~~~daDi~~ssD~~~~~ta~g~~dv~ddP~~~w~r~a~~~~~~~~NtGf  308 (426)
                      +.+.. +  ..| .||+.|+|++-++|+-+.|..+.-..+ .|                +.  +.        ..+|+|+
T Consensus        87 l~i~~-l--~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~-~~----------------~~--~~--------~~~nsGv  136 (263)
T d1ll2a_          87 LHCWS-L--TQYSKCVFMDADTLVLANIDDLFEREELSAA-PD----------------PG--WP--------DCFNSGV  136 (263)
T ss_dssp             GGGGG-C--TTCSEEEEECTTEEECSCCGGGGGSCSSEEE-EC----------------SS--ST--------TSEEEEE
T ss_pred             HHHhh-h--cccceEEEeCCCEEEecCHHHHhcCCcccee-cc----------------CC--Cc--------ccccCCc
Confidence            66643 2  345 599999999999999988865432111 11                10  01        1589999


Q ss_pred             EEEecChhHHHHHHHHHHHhCCCCCCchHHHHHHhc
Q 014357          309 FYIRPTIPSIELLDRVADRLGKEKAWDQAVFNEELF  344 (426)
Q Consensus       309 ~y~R~T~~s~~fl~~w~~rl~~~~~~DQ~afN~ll~  344 (426)
                      +.+.|......-+.............||.++|..+.
T Consensus       137 ~l~~p~~~~~~~i~~~~~~~~~~~~~dq~~ln~~~~  172 (263)
T d1ll2a_         137 FVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFN  172 (263)
T ss_dssp             EEECCCHHHHHHHHHHHHHTCCTTSSHHHHHHHHTT
T ss_pred             EEECccHHHHHHHHHHHHhhCCCChhhhhHHHHHHH
Confidence            999999887776666544444455679999999874
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure