Citrus Sinensis ID: 014396

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----

MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEHHHHHHHHHHHHEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcHHHHHHHHHHHHHEEEccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHcccEEEHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccEEEEEEccccEEEcccccccc

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHEHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHHHHHccccccEcccccccccccccEEEEEEHccccEEccccccccccccccccccccHEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHccccEEEEEEcccccHHHHHHHHEcccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccEEEEEEEEcccEEEEEcccccEEEEEcccccc

MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVArgrfslpapsvphnrhwapchaivATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMcralmpgdeesmndEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCtkwsnpvihrspqtrpatsssaityldwnsglvvsaeeeqnpdgmcglsdigghimkvPVIGFQVLLCMHLEGVGVVFSTTRLVEKIVILLRSgagtgiyfrissrahdcfgflhrgsrllgwwsidegsredQARLVHenssgyntfcgyppevvkkmpkkELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFegdisvvllpcrhrilcrydhltl

MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNpvihrspqtrpatsssaityLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHenssgyntfcgyppEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGdisvvllpcrhrilcrydhltl

MSWRRVLKSVQAVAAHSllltftlllvlklDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYppevvkkmpkkeLAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL

****RVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIH************AITYLDWNSGLVVSA******DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDE********LVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHL**

********SVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPV*******************DWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALG*****************NEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL

********SVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHR*********SSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYDHLTL

*SWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHR*******TSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGVGVVFSTTRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCRYD****

oooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		425
224132996		466	predicted protein [Populus trichocarpa]	0.983	0.896	0.770	0.0
225455850		466	PREDICTED: uncharacterized protein LOC10	0.981	0.894	0.793	0.0
224118894		467	predicted protein [Populus trichocarpa]	0.983	0.895	0.766	0.0
449477080		467	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.983	0.895	0.748	0.0
356563099		466	PREDICTED: uncharacterized protein LOC10	0.983	0.896	0.752	0.0
449440911		474	PREDICTED: uncharacterized protein LOC10	0.983	0.881	0.736	0.0
356563101		460	PREDICTED: uncharacterized protein LOC10	0.969	0.895	0.747	0.0
217073444		465	unknown [Medicago truncatula]	0.985	0.901	0.753	0.0
388500664		465	unknown [Medicago truncatula]	0.985	0.901	0.751	0.0
356511601		466	PREDICTED: uncharacterized protein LOC10	0.983	0.896	0.738	0.0

>gi\|224132996\|ref\|XP_002321460.1\| predicted protein [Populus trichocarpa] gi\|222868456\|gb\|EEF05587.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  708 bits (1828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/440 (77%), Positives = 377/440 (85%), Gaps = 22/440 (5%)

Query: 1   MSWRRVLKSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
           M+WRRVLKSVQA+AAH LL +FTL LVLKLDHV+SYSWW++FFP+W FH VVARGRFSLP
Sbjct: 1   MNWRRVLKSVQALAAHCLLFSFTLFLVLKLDHVVSYSWWLIFFPLWTFHVVVARGRFSLP 60

Query: 61  APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
           APSVP NRHWAPCHA+VATPLLIAFELLLCIYLES+Y +   AVNLKIVF+PLLAFE+ I
Sbjct: 61  APSVPRNRHWAPCHAVVATPLLIAFELLLCIYLESVYVYHIAAVNLKIVFIPLLAFEVII 120

Query: 121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
           LIDNFRMC+ALMPG+EES++DEAIWE LPHFWVAISMVFFVAATVFTLLKL G VGALGW
Sbjct: 121 LIDNFRMCKALMPGEEESISDEAIWETLPHFWVAISMVFFVAATVFTLLKLGGDVGALGW 180

Query: 181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNP 240
           WDLFINF IAECFAFLVCTKWSNPVIHR+ QTR A+SS  I YLDWN GL+VS EE Q+ 
Sbjct: 181 WDLFINFSIAECFAFLVCTKWSNPVIHRNSQTREASSSMTIRYLDWNGGLMVSPEENQHQ 240

Query: 241 DGMCGLSDIGGHIMKVPVIGFQVLLCMHLEGV----------------------GVVFST 278
           D MCGL DIGGH+MK+P+IGFQVLLCMHLEG                       GV+F+ 
Sbjct: 241 DRMCGLQDIGGHLMKIPLIGFQVLLCMHLEGTPAGARNIPLLVLFSPLFLLQGAGVLFAA 300

Query: 279 TRLVEKIVILLRSGAGTGIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 338
           ++L EK+V+LLRS AGTG YF  SSRAHDC GFLH GSRLLGWWSIDEGS+E+QARL H 
Sbjct: 301 SKLAEKLVLLLRSEAGTGRYFTFSSRAHDCLGFLHHGSRLLGWWSIDEGSQEEQARLYHM 360

Query: 339 NSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNEKVLCR 398
             + YNTFCGYPPE+VKKMPKK+LAEEVWRLQAALG+Q+EIT YS+QEFERLQNEKVLCR
Sbjct: 361 GDASYNTFCGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLQNEKVLCR 420

Query: 399 VCFEGDISVVLLPCRHRILC 418
           VCFEG+ISVVLLPCRHRILC
Sbjct: 421 VCFEGEISVVLLPCRHRILC 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225455850\|ref\|XP_002273782.1\| PREDICTED: uncharacterized protein LOC100256061 [Vitis vinifera] gi\|297734166\|emb\|CBI15413.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224118894\|ref\|XP_002317932.1\| predicted protein [Populus trichocarpa] gi\|222858605\|gb\|EEE96152.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449477080\|ref\|XP_004154923.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101215825 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356563099\|ref\|XP_003549803.1\| PREDICTED: uncharacterized protein LOC100791390 isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|449440911\|ref\|XP_004138227.1\| PREDICTED: uncharacterized protein LOC101215825 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356563101\|ref\|XP_003549804.1\| PREDICTED: uncharacterized protein LOC100791390 isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|217073444\|gb\|ACJ85081.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388500664\|gb\|AFK38398.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356511601\|ref\|XP_003524512.1\| PREDICTED: uncharacterized protein LOC100810936 isoform 1 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		425
TAIR\|locus:2014089		467	AT1G18470 [Arabidopsis thalian	0.637	0.580	0.731	3.1e-166
TAIR\|locus:2031471		466	AT1G73950 [Arabidopsis thalian	0.76	0.693	0.635	1.7e-107
TAIR\|locus:2012453		468	AT1G68820 [Arabidopsis thalian	0.76	0.690	0.583	7.7e-103

TAIR\|locus:2014089 AT1G18470 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1067 (380.7 bits), Expect = 3.1e-166, Sum P(2) = 3.1e-166
 Identities = 199/272 (73%), Positives = 225/272 (82%)

Query:     1 MSWRRVLKSVQAVAAHSXXXXXXXXXXXXXDHVISYSWWIVFFPVWIFHAVVARGRFSLP 60
             MS RRVLKS+QA+AAHS             DH +S SWW+VFFP+W FHAVVARGRFSLP
Sbjct:     1 MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWWMVFFPLWAFHAVVARGRFSLP 60

Query:    61 APSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITI 120
             AP  P NRHWAPCHA+VATPLL+AFELLLCIYLES Y     AV+LKI FLPLLAFE+TI
Sbjct:    61 APVAPRNRHWAPCHAVVATPLLVAFELLLCIYLESSYARWPPAVSLKIAFLPLLAFELTI 120

Query:   121 LIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGW 180
             L+DN RMCRALMPGD++S+ D+AIWEALPHFWVAISMVF +AAT FTLLKL G V ALGW
Sbjct:   121 LVDNLRMCRALMPGDDDSITDDAIWEALPHFWVAISMVFTLAATFFTLLKLSGDVVALGW 180

Query:   181 WDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSS-AITYLDWNSGLVVSAEEEQN 239
             WDLFINFGIAECFAFLVCTKWSNPVIHRS + R   SSS +I YLDWNSGLVV+ EE+++
Sbjct:   181 WDLFINFGIAECFAFLVCTKWSNPVIHRSSRARETGSSSTSIRYLDWNSGLVVAPEEDRH 240

Query:   240 PDGMCGLSDIGGHIMKVPVIGFQVLLCMHLEG 271
              D  CGL DIGGH++K+PVI FQV+LCM+LEG
Sbjct:   241 QDRWCGLQDIGGHMLKIPVILFQVVLCMYLEG 272

GO:0005576 "extracellular region" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=RCA

TAIR\|locus:2031471 AT1G73950 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2012453 AT1G68820 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		425
pfam10269		226	pfam10269, Tmemb_185A, Transmembrane Fragile-X-F p	6e-59
pfam13920		49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	3e-06
pfam10269		226	pfam10269, Tmemb_185A, Transmembrane Fragile-X-F p	8e-04

>gnl\|CDD\|220666 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F protein	Back alignment and domain information

 Score =  191 bits (488), Expect = 6e-59
 Identities = 83/250 (33%), Positives = 108/250 (43%), Gaps = 40/250 (16%)

Query: 28  LKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFEL 87
           L+LD  IS+SWW VF P+WI+  VV  G F L A  V  N   A    +V   LL+AFEL
Sbjct: 1   LRLDGYISWSWWAVFAPLWIWKLVVLLGAFLLIAS-VSRNEFKAMLIGLVCHLLLLAFEL 59

Query: 88  LLCIYLESIYEHGFEAVNLKIVFLPLLA---FEITILIDNFRMCRALMPGDEESMNDEAI 144
           L+CI L         A+   IVF+PL A     I IL+  FR   +          D + 
Sbjct: 60  LVCIKLG-----LSGALLWSIVFIPLYALSVLSILILLWGFRFTMS----------DRSY 104

Query: 145 WEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNP 204
              L +    +  VF +A   F  LKL G V    WW +FI   I    AFLV       
Sbjct: 105 ELELFYAVNILQFVFAIAFFTFLALKLDGVV-DWSWWVVFIPLWIVLGLAFLVV------ 157

Query: 205 VIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVL 264
                          +I  L  N  L+VS +E      +  LS      + +P++ FQVL
Sbjct: 158 ---------LYLVIMSIRLLREN-NLLVSQDERALASAIGYLS----IFIVIPMLVFQVL 203

Query: 265 LCMHLEGVGV 274
           L M L+G   
Sbjct: 204 LEMRLDGDNN 213

This is a family of conserved transmembrane proteins that appear in humans to be expressed from a region upstream of the FragileXF site and to be intimately linked with the Fragile-X syndrome. Absence of TMEM185A does not necessarily lead to developmental delay, but might in combination with other, yet unknown, factors. Otherwise, the lack of the TMEM185A protein is either disposable (redundant) or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B. Length = 226

>gnl\|CDD\|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)	Back alignment and domain information

>gnl\|CDD\|220666 pfam10269, Tmemb_185A, Transmembrane Fragile-X-F protein	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		425
PF10269		238	Tmemb_185A: Transmembrane Fragile-X-F protein ; In	100.0
KOG3879		267	consensus Predicted membrane protein [Function unk	99.98
KOG3879		267	consensus Predicted membrane protein [Function unk	99.82
PF10269		238	Tmemb_185A: Transmembrane Fragile-X-F protein ; In	99.55
KOG1101		147	consensus Apoptosis inhibitor IAP1 and related BIR	98.39
KOG4265		349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.27
KOG4275		350	consensus Predicted E3 ubiquitin ligase [Posttrans	98.25
KOG1100		207	consensus Predicted E3 ubiquitin ligase [Posttrans	98.21
PF13920		50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.01
KOG1571		355	consensus Predicted E3 ubiquitin ligase [Posttrans	97.48
KOG4172		62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.66
smart00238		71	BIR Baculoviral inhibition of apoptosis protein re	95.69
cd00022		69	BIR Baculoviral inhibition of apoptosis protein re	95.4
PF13923		39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	95.33
PF00653		70	BIR: Inhibitor of Apoptosis domain; InterPro: IPR0	95.26
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	94.92
KOG4692		489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.91
KOG1785		563	consensus Tyrosine kinase negative regulator CBL [	93.27
PF13445		43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	92.78
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	92.69
KOG1814		445	consensus Predicted E3 ubiquitin ligase [Posttrans	90.89
PF14634		44	zf-RING_5: zinc-RING finger domain	89.93
PF14447		55	Prok-RING_4: Prokaryotic RING finger family 4	89.33
PF15227		42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	88.38
KOG0978		698	consensus E3 ubiquitin ligase involved in syntaxin	87.39
PHA02929		238	N1R/p28-like protein; Provisional	86.9
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	86.69
COG5236		493	Uncharacterized conserved protein, contains RING Z	83.7
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	82.19

>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome	Back alignment and domain information

Probab=100.00  E-value=9.1e-42  Score=328.74  Aligned_cols=215  Identities=48%  Similarity=0.826  Sum_probs=178.8

Q ss_pred             HhcCCccccchhHHHHHHHHHHHHHHhccccCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHhccccccccccccee
Q 014396           28 LKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLK  107 (425)
Q Consensus        28 LKLDg~I~wSWwvVFiPLWI~~~lv~rg~~~~~~~~~~~~r~wa~~~s~v~l~LLl~FeiLLc~kLe~~~~~~~~~~~w~  107 (425)
                      ||+||.++||||.||+|+|++++++++|.+........+++.++.+++....+++++||+|+|.||++...     .+|.
T Consensus         1 LrlD~~i~wsww~VF~Plw~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~lll~~f~~llc~~L~~~~~-----~~w~   75 (238)
T PF10269_consen    1 LRLDGVISWSWWIVFIPLWIWKAIVIVGAFVGIAVSRPRVDFKAMLISVVAHLLLLAFELLLCIKLEGGSS-----ISWS   75 (238)
T ss_pred             CccCceeeccHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCc-----ceee
Confidence            69999999999999999999999999988665544445566666666667778899999999999965555     7999


Q ss_pred             eehhhHHHHHH---HHHHHHhhhhhccCCCCCCcchhHHHHhhcchHHHHHHHHHHHHHHHHhhhhhcccccccceEEEe
Q 014396          108 IVFLPLLAFEI---TILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLF  184 (425)
Q Consensus       108 iVFiPL~~l~~---~l~v~~fr~C~~~~~g~~~sl~~e~~~~~~~~fw~~ismlf~laa~vfl~LKLDg~~~~~~W~vVF  184 (425)
                      +||+|+|++.+   ..+++++||    +||+++++++++.+++.+++|..++++|.++|++|+++|||+. ++|+||+||
T Consensus        76 ~VFiPL~~l~~~~I~~~i~~~r~----~~~~~e~~~~~~~~~~~~~~~~~l~~if~~~f~v~l~Lkld~~-i~~sW~~vF  150 (238)
T PF10269_consen   76 IVFIPLFVLSALSILICIWNFRH----MPGDGEEMSDRSIWFELPFFWNILSLIFFLAFTVFLALKLDGV-IDWSWWIVF  150 (238)
T ss_pred             eeeechhhHHHHHHHHHHHhhcc----CcccccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCc-ccccHHHHH
Confidence            99999987764   777788888    7899899999999999999999999999999999999999999 999999999


Q ss_pred             ehHHHHHHHHHHhhccCCCccccCCCCCCCCCCcceeeeeeeccceeecccccCCCCCccccccccceeehhhHHHHHHH
Q 014396          185 INFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLSDIGGHIMKVPVIGFQVL  264 (425)
Q Consensus       185 IPlWI~l~~~~l~c~~~~~p~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~q~~~~~~~~i~~~~~~ip~~~f~il  264 (425)
                      ||+||.+++++++|.-.               .+..++|.+++++...++++++.|.+.|+    |++++++|+++||+|
T Consensus       151 iPl~i~~~~~~~~~~~~---------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~l~F~vL  211 (238)
T PF10269_consen  151 IPLWIADGLAFLVCLYS---------------IIMSIRYLDRNPGLLPSQRRSSLQSRICW----GGLFLVIPLLVFQVL  211 (238)
T ss_pred             HHHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCCchhhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            99999999999975331               22344566776555444444444444322    559999999999999


Q ss_pred             HHHhhcc
Q 014396          265 LCMHLEG  271 (425)
Q Consensus       265 L~~~Ldg  271 (425)
                      ||+||||
T Consensus       212 L~~kLe~  218 (238)
T PF10269_consen  212 LCMKLEG  218 (238)
T ss_pred             HHHHhcC
Confidence            9999999

The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].

>KOG3879 consensus Predicted membrane protein [Function unknown]	Back alignment and domain information

>KOG3879 consensus Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome	Back alignment and domain information

>KOG1101 consensus Apoptosis inhibitor IAP1 and related BIR domain proteins [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A	Back alignment and domain information

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat	Back alignment and domain information

>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins	Back alignment and domain information

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A	Back alignment and domain information

>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]	Back alignment and domain information

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14634 zf-RING_5: zinc-RING finger domain	Back alignment and domain information

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4	Back alignment and domain information

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A	Back alignment and domain information

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PHA02929 N1R/p28-like protein; Provisional	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		425
4ic3_A		74	Crystal Structure Of The F495l Mutant Xiap Ring Dom		3e-04
4ic2_A		74	Crystal Structure Of The Xiap Ring Domain Length =		3e-04
2ecg_A		75	Solution Structure Of The Ring Domain Of The Baculo		4e-04

>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain Length = 74

Back alignment and structure

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 376 QSEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCR 419
           Q EI+  + ++  RLQ EK LC++C + +I++V +PC H + C+
Sbjct: 9   QKEIS--TEEQLRRLQEEK-LCKICMDRNIAIVFVPCGHLVTCK 49

PyMOL of 4ic3

>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain Length = 74

Back alignment and structure

>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap Repeat-Containing Protein 4 From Homo Sapiens Length = 75

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		425
2yho_A		79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	4e-09
2ecg_A		75	Baculoviral IAP repeat-containing protein 4; BIRC4	2e-08
2ea5_A		68	Cell growth regulator with ring finger domain prot	7e-08
3t6p_A		345	Baculoviral IAP repeat-containing protein 2; ring,	5e-05

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79	Back alignment and structure

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 377 SEITNYSRQEFERLQNEKVLCRVCFEGDISVVLLPCRHRILCR 419
           ++ T   +++  +L+ E +LC VC E +I+    PC H + C 
Sbjct: 2   AQQTRVLQEKLRKLK-EAMLCMVCCEEEINSTFCPCGHTVCCE 43

PyMOL of 2yho

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75	Back alignment and structure

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68	Back alignment and structure

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		425
3t6p_A		345	Baculoviral IAP repeat-containing protein 2; ring,	99.4
2yho_A		79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.61
2ea5_A		68	Cell growth regulator with ring finger domain prot	98.47
4ic3_A		74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.32
3mup_A		122	Baculoviral IAP repeat-containing protein 2; zinc-	98.31
3hl5_A		95	Baculoviral IAP repeat-containing protein 4; BIR,	98.29
2vje_B		63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.21
3d9t_A		97	Baculoviral IAP repeat-containing protein 2; zinc	98.16
2vje_A		64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.14
1jd5_A		124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	98.14
2i3h_A		133	Baculoviral IAP repeat-containing protein 7; zinc	98.12
2ecg_A		75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.07
1g73_C		121	Inhibitors of apoptosis-like protein ILP; helix bu	97.95
2vm5_A		106	Baculoviral IAP repeat-containing protein 1; apopt	97.83
2qfa_A		142	Baculoviral IAP repeat-containing protein 5; three	97.71
2poi_A		94	Baculoviral IAP repeat-containing protein 4; zinc	97.15
3m1d_A		85	Baculoviral IAP repeat-containing protein 2; BIR,	97.14
1se0_A		116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	97.13
2qra_D		111	XIAP, baculoviral IAP repeat-containing protein 4,	97.07
3siq_A		136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	96.91
1i4o_C		141	X-linked IAP, baculoviral IAP repeat-containing pr	96.84
4ayc_A		138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	96.53
3fl2_A		124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	96.24
2ecn_A		70	Ring finger protein 141; RNF141, ring domain, zinc	96.24
2y1n_A		389	E3 ubiquitin-protein ligase; ligase-transferase co	95.96
2ysj_A		63	Tripartite motif-containing protein 31; ring-type	95.92
1z6u_A		150	NP95-like ring finger protein isoform B; structura	95.9
2ysl_A		73	Tripartite motif-containing protein 31; ring-type	95.88
2ecj_A		58	Tripartite motif-containing protein 39; TRIM39, ri	95.82
2d8t_A		71	Dactylidin, ring finger protein 146; RNF146, ring	95.81
1bor_A		56	Transcription factor PML; proto-oncogene, nuclear	95.62
1chc_A		68	Equine herpes virus-1 ring domain; viral protein;	95.45
1jm7_A		112	BRCA1, breast cancer type 1 susceptibility protein	95.21
2djb_A		72	Polycomb group ring finger protein 6; PCGF6, ring	95.16
2yur_A		74	Retinoblastoma-binding protein 6; P53-associated c	95.14
2ecv_A		85	Tripartite motif-containing protein 5; metal bindi	94.98
2ecw_A		85	Tripartite motif-containing protein 30; metal bind	94.84
2csy_A		81	Zinc finger protein 183-like 1; ring finger protei	94.83
2y43_A		99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	94.8
2ct2_A		88	Tripartite motif protein 32; zinc-finger protein H	94.75
2egp_A		79	Tripartite motif-containing protein 34; ZF-C3HC4 d	94.52
2ecm_A		55	Ring finger and CHY zinc finger domain- containing	94.44
3lrq_A		100	E3 ubiquitin-protein ligase TRIM37; structural gen	94.33
2ckl_A		108	Polycomb group ring finger protein 4; BMI1, RING1B	94.29
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	94.19
1jm7_B		117	BARD1, BRCA1-associated ring domain protein 1; rin	94.07
2ea6_A		69	Ring finger protein 4; RNF4, RES4-26, ring domain,	93.78
2ect_A		78	Ring finger protein 126; metal binding protein, st	93.46
2ecy_A		66	TNF receptor-associated factor 3; metal binding pr	93.42
2xeu_A		64	Ring finger protein 4; transcription, zinc-finger,	93.28
3l11_A		115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	93.24
3ng2_A		71	RNF4, snurf, ring finger protein 4; ring domain, E	93.12
2ep4_A		74	Ring finger protein 24; zinc binding, ubiquitin, E	92.94
1iym_A		55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	92.94
1g25_A		65	CDK-activating kinase assembly factor MAT1; ring f	92.85
1x4j_A		75	Ring finger protein 38; structural genomics, NPPSF	92.72
2ckl_B		165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	92.61
3ztg_A		92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	92.49
1rmd_A		116	RAG1; V(D)J recombination, antibody, MAD, ring fin	91.85
2l0b_A		91	E3 ubiquitin-protein ligase praja-1; zinc finger,	91.34
1t1h_A		78	Gspef-atpub14, armadillo repeat containing protein	91.32
1e4u_A		78	Transcriptional repressor NOT4; gene regulation, t	91.13
3hct_A		118	TNF receptor-associated factor 6; cross-brace, bet	90.73
1wim_A		94	KIAA0161 protein; ring finger domain, UBCM4-intera	87.82
3knv_A		141	TNF receptor-associated factor 2; cross-brace, alt	86.14
1v87_A		114	Deltex protein 2; ring-H2 domain, zinc-binding dom	82.31

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B	Back alignment and structure

Probab=99.40  E-value=1.1e-13  Score=139.20  Aligned_cols=49  Identities=18%  Similarity=0.369  Sum_probs=44.7

Q ss_pred             cccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHH
Q 014396          306 HDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW  367 (425)
Q Consensus       306 ~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~  367 (425)
                      .|-+.=.+||+.|.+ |+++||||+||+||+|.        |    .+|+.+||+||+++++
T Consensus        38 ~D~v~Cf~C~~~l~~-We~~DdP~~eH~~~~p~--------C----~f~~~~kg~~~i~~~~   86 (345)
T 3t6p_A           38 NDDVKCFSCDGGLRC-WESGDDPWVEHAKWFPR--------C----EFLIRMKGQEFVDEIQ   86 (345)
T ss_dssp             TTCEEETTTCCEECC-CCTTCCHHHHHHHHCTT--------C----HHHHHHHCHHHHHHHH
T ss_pred             CCeEEecCCCCCccC-CCCCCCHHHHHHHhCCC--------C----ccHHHhccHHHHHHHH
Confidence            788888999999999 99999999999999999        9    8888999999887655

PyMOL of 3t6p

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A	Back alignment and structure

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A	Back alignment and structure

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*	Back alignment and structure

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A	Back alignment and structure

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*	Back alignment and structure

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A	Back alignment and structure

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A	Back alignment and structure

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A	Back alignment and structure

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*	Back alignment and structure

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A	Back alignment and structure

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}	Back alignment and structure

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...	Back alignment and structure

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B	Back alignment and structure

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D	Back alignment and structure

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E	Back alignment and structure

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}	Back alignment and structure

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}	Back alignment and structure

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A	Back alignment and structure

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C	Back alignment and structure

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}	Back alignment and structure

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*	Back alignment and structure

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}	Back alignment and structure

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1	Back alignment and structure

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}	Back alignment and structure

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}	Back alignment and structure

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}	Back alignment and structure

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}	Back alignment and structure

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A	Back alignment and structure

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}	Back alignment and structure

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}	Back alignment and structure

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}	Back alignment and structure

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}	Back alignment and structure

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}	Back alignment and structure

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1	Back alignment and structure

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B	Back alignment and structure

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}	Back alignment and structure

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1	Back alignment and structure

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}	Back alignment and structure

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2	Back alignment and structure

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B	Back alignment and structure

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A	Back alignment and structure

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1	Back alignment and structure

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}	Back alignment and structure

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		425
d2vsla1		96	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	98.2
d3d9ta1		87	2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d2i3ha1		90	BIR-containing protein 7 (ML-IAP, livin) {Human (H	98.07
d1jd5a_		105	BIR domains of DIAP1 {Fruit fly (Drosophila melano	97.98
d2qfaa1		137	Anti-apoptotic protein survivin {Human (Homo sapie	97.84
d1fbva4		79	CBL {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1se0a_		97	BIR domains of DIAP1 {Fruit fly (Drosophila melano	96.25
d1i3oe_		111	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	96.14
d1bora_		56	Acute promyelocytic leukaemia proto-oncoprotein PM	95.7
d1rmda2		86	V(D)J recombination activating protein 1 (RAG1), d	94.15
d1jm7a_		103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	94.09
d1jm7b_		97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	94.04
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	92.52
d1chca_		68	Immediate early protein, IEEHV {Equine herpesvirus	90.11
d1wima_		94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	88.12
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	87.21
d2c2la2		80	STIP1 homology and U box-containing protein 1, STU	86.57
d1t1ha_		78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	86.45
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	85.56
d1iyma_		55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	83.16
d2baya1		56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	81.27

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.7e-07  Score=76.42  Aligned_cols=51  Identities=20%  Similarity=0.343  Sum_probs=46.3

Q ss_pred             cccccccccccCccccccccCCCCChHHHhhhhhcCCCCCccccCCCcchhhccCchhhhHHHH
Q 014396          304 RAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVW  367 (425)
Q Consensus       304 ~~~~~~~~~~~~~~l~~~W~~~~~~~ee~ar~~~~~~~~~~~~c~~~p~~V~~~~~~e~vqe~~  367 (425)
                      ...|-+.=.+||..|.+ |+++|+||+||++++|.        |    ++|+.+||++++++++
T Consensus        44 g~~D~v~Cf~C~~~l~~-W~~~D~P~~eH~~~~p~--------C----~fv~~~kg~~~v~~v~   94 (96)
T d2vsla1          44 GEGDKVKCFHCGGGLTD-WKPSEDPWEQHAKWYPG--------C----KYLLEQKGQEYINNIH   94 (96)
T ss_dssp             SSTTCEEETTTCCEEES-CCTTCCHHHHHHHHCTT--------C----HHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEeccCCCEeCC-CCCCCCHHHHHHHHCcC--------C----eehHhccChhhhhccc
Confidence            34678888899999999 99999999999999999        9    9999999999998874

PyMOL of d2vsla1

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}	Back information, alignment and structure

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}	Back information, alignment and structure

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure