Citrus Sinensis ID: 014411

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEPGSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDNIVGTVVEVPFLARQSPPLLSKSSSS
cccccccccEEEEEccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHccccEEcccccccccccccHHHHHHHHHHcccEEEcccccEEEEEcccHHHHHHHcccccccccccccEEEEEcccccccEEEEEEEEEEccEEEEEEccccHHHHHHHHHHHccccccEEEEEccccEEEEEEEcccHHHHHHHcccccccccccccEEEEEEccccEEEEEccccccccEEEEEccccHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccEEEccccccccHHHHHHHHHHcccccEEEEEEEEccccccccEEEccEEEEEEEccccccccccEEEEEEEcccccccccEEEcccEEEEEEEEcccccccccccccccccc
ccccccccHEEEEEccccHHcHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccHHHHccccccHHHHHHcccEEEEcccccccEEcccHHHHHHHHHHHcccEEEccccEEEEEcHHHHHHHHHHcHccHHHcccccEEEEEEEcccccEEcEEEEEEccccEEEEEEccccHHHHHHHHHHHcccccEEEEEccHHHHHHHHccHHHHHHHHHHcHccHHHcccEEEEEEEEcccEEEEEEccccccccEEEEEcHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccHccccEEEEcccccccHHHHHHHHHHHcccccEEEEEEEccccccccEEEEccEEEEEEEcccccccccccEEEEEEcHHHcccccEEEEccEEcEEEEccccccccccccccccccc
maatsstatthlivgstsrlhntrttkffqNGVVLTQKKTlslrrrrsasipptavlpfdlspppidhdLLETVKsegakisgegivetfgndgealdaadngvaavdlshfgrirvsgddriQFLHNQSTANFEILregqgcdtvfvtptaRTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFAdkveiqditkqTCLFVvvgpksnqvmrdlnlgdlvgeaygthrhysvngmpiTVGVGNVIseegfsllmspaaaGSVWETLLSqgavpmgsnAWEKLRIikgrpapgkeltnEFNVLEAGLWnsisldkgcykgqETISRLITYDGLKQRLWGIclsapaepgspiivdgkkvgkltsytlgrkesdhfglgyikrkdalggdtvtvgdNIVGTVVEvpflarqsppllskssss
maatsstatthlivgstsrlhntrttkffqngvvltqkktlslrrrrsasipptavlpfdlspppIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSapaepgspiivdgkkVGKLTSYtlgrkesdhfgLGYIKRKDALGGDTVTVGDNIVGTVVEVpflarqsppllskssss
MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEPGSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDNIVGTVVEVPFLARQsppllskssss
***********LIVGSTSRLHNTRTTKFFQNGVVLTQKKT****************************************ISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEPGSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDNIVGTVVEVPFLA*************
**********HLIVGSTSRLHNTRTTKFF**GVVLTQKKT*SL*********************PIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEPGSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDNIVGTVVEVPFL**************
**********HLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEPGSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDNIVGTVVEVPFLARQ***********
******TATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEPGSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDNIVGTVVEVPFLARQS**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEPGSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDNIVGTVVEVPFLARQSPPLLSKSSSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query425 2.2.26 [Sep-21-2011]
B8D1D7357 Aminomethyltransferase OS yes no 0.738 0.879 0.253 4e-20
Q3AET7360 Aminomethyltransferase OS yes no 0.731 0.863 0.248 6e-20
Q8RCV9374 Aminomethyltransferase OS yes no 0.694 0.788 0.270 3e-19
B7K468369 Aminomethyltransferase OS no no 0.797 0.918 0.250 4e-19
Q5KX76364 Aminomethyltransferase OS yes no 0.755 0.881 0.270 1e-18
B0KD95368 Aminomethyltransferase OS yes no 0.696 0.804 0.254 4e-18
Q1AR89372 Aminomethyltransferase OS yes no 0.712 0.814 0.278 5e-18
B9K6R7363 Aminomethyltransferase OS yes no 0.734 0.859 0.258 9e-18
Q5N136372 Aminomethyltransferase OS no no 0.705 0.806 0.267 2e-17
Q31KT1372 Aminomethyltransferase OS no no 0.705 0.806 0.267 2e-17
>sp|B8D1D7|GCST_HALOH Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV=1 Back     alignment and function desciption
 Score = 99.4 bits (246), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 149/327 (45%), Gaps = 13/327 (3%)

Query: 95  EALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTART 154
           E   A  N     D+SH G I V G   ++ L    T N   L++GQ   T         
Sbjct: 34  EEHKAVRNQCGLFDVSHMGEILVEGPGALESLQKIVTNNVARLKKGQVLYTPMCKDDGGI 93

Query: 155 IDIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFAD-KVEIQDITKQTCLFVVVGPKSN 213
           ID    + +     L+V  +  S+I +  N     ++ + E+ + +    L  + GP S 
Sbjct: 94  IDDLLVYCLGQDKYLMV--VNASNIEKDFNWVRDNSNQRTEVVNESDNYALLALQGPNSK 151

Query: 214 QVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS 273
           +++  ++  +L    +      ++ G  + +       E G+ L +SP  A  VW+ L+ 
Sbjct: 152 KILEKVSSVNLDSLKFYNFTTGTLKGAEVLISRTGYTGELGYELYLSPDKAVEVWQALME 211

Query: 274 QGA----VPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETIS 329
            G+    +P G  A + LR+ KG    G ++    + LEAGL  ++  DK  + G+  + 
Sbjct: 212 AGSDLGLIPAGLGARDTLRLEKGYCLYGNDIDENTHPLEAGLGWTVKFDKASFIGKRALL 271

Query: 330 RLITYDGLKQRLWGICLSAPAEP--GSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRK 387
           +    +GL ++L G  L     P  G PI  +G ++G +TS ++    S+  G+GY++  
Sbjct: 272 KY-KEEGLSRKLVGFKLKGRGIPRHGYPIKDNGDQIGVVTSGSMSPTLSEGIGMGYVRYD 330

Query: 388 DALGGDTVTV---GDNIVGTVVEVPFL 411
            A  G+++T+      I G VV++PF+
Sbjct: 331 KATPGESITIVVRNRAITGEVVKLPFI 357
The glycine cleavage system catalyzes the degradation of glycine.
Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) (taxid: 373903)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 0
>sp|Q3AET7|GCST_CARHZ Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|Q8RCV9|GCST_THETN Aminomethyltransferase OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|B7K468|GCST_CYAP8 Aminomethyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|Q5KX76|GCST_GEOKA Aminomethyltransferase OS=Geobacillus kaustophilus (strain HTA426) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|B0KD95|GCST_THEP3 Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|Q1AR89|GCST_RUBXD Aminomethyltransferase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|B9K6R7|GCST_THENN Aminomethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|Q5N136|GCST_SYNP6 Aminomethyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=gcvT PE=3 SV=1 Back     alignment and function description
>sp|Q31KT1|GCST_SYNE7 Aminomethyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=gcvT PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
225447955430 PREDICTED: aminomethyltransferase [Vitis 0.988 0.976 0.728 1e-178
356512604423 PREDICTED: aminomethyltransferase-like [ 0.847 0.851 0.802 1e-173
255577330433 fad oxidoreductase, putative [Ricinus co 0.988 0.969 0.706 1e-172
357519357422 Aminomethyltransferase [Medicago truncat 0.858 0.864 0.782 1e-168
449444697445 PREDICTED: aminomethyltransferase-like [ 0.96 0.916 0.703 1e-167
297837379423 At1g60990 [Arabidopsis lyrata subsp. lyr 0.962 0.966 0.684 1e-166
79367480432 aminomethyltransferase [Arabidopsis thal 0.962 0.946 0.681 1e-166
46518443423 At1g60990 [Arabidopsis thaliana] 0.962 0.966 0.681 1e-166
12323347436 hypothetical protein; 60474-57856 [Arabi 0.962 0.938 0.661 1e-163
302788266354 hypothetical protein SELMODRAFT_104148 [ 0.795 0.954 0.582 1e-112
>gi|225447955|ref|XP_002269147.1| PREDICTED: aminomethyltransferase [Vitis vinifera] gi|298204501|emb|CBI23776.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 314/431 (72%), Positives = 347/431 (80%), Gaps = 11/431 (2%)

Query: 1   MAATSSTATTHLIVGSTSRLHNTRTTKFFQNGVVLTQK--------KTLSLRRRRSASIP 52
           MAAT      +L+VG+T+ L  + +     +    T K        +  + R       P
Sbjct: 1   MAATVG-CMRYLLVGATTPLRRSTSLPSSSSFSSWTWKPNPISFPIQNHAFRSPEKFFTP 59

Query: 53  PTAVLPFDLSPPPIDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHF 112
             A  PFDLSPPPID DLL+TV   GA++S  GI+ETF ND EALDA DNGV  VDLSHF
Sbjct: 60  LAAASPFDLSPPPIDLDLLDTVTEAGAEVSEAGIIETFDNDDEALDAVDNGVVVVDLSHF 119

Query: 113 GRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVS 172
           GRIRVSGDDRIQFLHNQSTANFE L+EGQGCDTVFVTPTARTID+AHAWIMKNAV LVVS
Sbjct: 120 GRIRVSGDDRIQFLHNQSTANFECLQEGQGCDTVFVTPTARTIDVAHAWIMKNAVTLVVS 179

Query: 173 PLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTH 232
           P+TC SI EML KY+FFADKVEIQDITK+T  FV+VGPKS+QVM DLNLG LVG+ YGTH
Sbjct: 180 PVTCGSIIEMLTKYIFFADKVEIQDITKKTSFFVLVGPKSHQVMEDLNLGALVGKPYGTH 239

Query: 233 RHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKG 292
           +H+ VNGMPITVGVGN ISE+GFS +MSPA AGSVW+ LLSQGA+PMGSNAWEKLRI +G
Sbjct: 240 QHFMVNGMPITVGVGNAISEDGFSFMMSPAIAGSVWKALLSQGAIPMGSNAWEKLRIFQG 299

Query: 293 RPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEP 352
           RPAPGKELTNEFNVLEAGLWNSISL+KGCYKGQETISRLITYDG+KQRLWGI LS PAEP
Sbjct: 300 RPAPGKELTNEFNVLEAGLWNSISLNKGCYKGQETISRLITYDGVKQRLWGISLSGPAEP 359

Query: 353 GSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDNIVGTVVEVPFLA 412
           GSPI  DGKKVGKLTSY  GR ES+HFGLGYIKR+ A  G+TV VGDNI GTVVEVPFLA
Sbjct: 360 GSPITADGKKVGKLTSYACGRTESEHFGLGYIKRQAASNGNTVIVGDNIAGTVVEVPFLA 419

Query: 413 RQSPPLLSKSS 423
            QSPP  SKSS
Sbjct: 420 WQSPP--SKSS 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356512604|ref|XP_003525008.1| PREDICTED: aminomethyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|255577330|ref|XP_002529546.1| fad oxidoreductase, putative [Ricinus communis] gi|223530994|gb|EEF32849.1| fad oxidoreductase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357519357|ref|XP_003629967.1| Aminomethyltransferase [Medicago truncatula] gi|355523989|gb|AET04443.1| Aminomethyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449444697|ref|XP_004140110.1| PREDICTED: aminomethyltransferase-like [Cucumis sativus] gi|449511901|ref|XP_004164084.1| PREDICTED: aminomethyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297837379|ref|XP_002886571.1| At1g60990 [Arabidopsis lyrata subsp. lyrata] gi|297332412|gb|EFH62830.1| At1g60990 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|79367480|ref|NP_176295.3| aminomethyltransferase [Arabidopsis thaliana] gi|145326078|ref|NP_001077748.1| aminomethyltransferase [Arabidopsis thaliana] gi|186492130|ref|NP_001117522.1| aminomethyltransferase [Arabidopsis thaliana] gi|51969110|dbj|BAD43247.1| unnamed protein product [Arabidopsis thaliana] gi|332195639|gb|AEE33760.1| aminomethyltransferase [Arabidopsis thaliana] gi|332195640|gb|AEE33761.1| aminomethyltransferase [Arabidopsis thaliana] gi|332195641|gb|AEE33762.1| aminomethyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|46518443|gb|AAS99703.1| At1g60990 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|12323347|gb|AAG51655.1|AC018908_21 hypothetical protein; 60474-57856 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|302788266|ref|XP_002975902.1| hypothetical protein SELMODRAFT_104148 [Selaginella moellendorffii] gi|300156178|gb|EFJ22807.1| hypothetical protein SELMODRAFT_104148 [Selaginella moellendorffii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query425
TAIR|locus:2206051432 AT1G60990 [Arabidopsis thalian 0.941 0.925 0.687 6.2e-149
TIGR_CMR|CHY_0489360 CHY_0489 "glycine cleavage sys 0.731 0.863 0.254 4.1e-20
TIGR_CMR|SPO_3396816 SPO_3396 "FAD dependent oxidor 0.731 0.381 0.277 1.2e-17
TIGR_CMR|BA_4449366 BA_4449 "glycine cleavage syst 0.755 0.877 0.235 5e-14
UNIPROTKB|F1RF50866 DMGDH "Uncharacterized protein 0.705 0.346 0.265 2.6e-13
MGI|MGI:1921379869 Dmgdh "dimethylglycine dehydro 0.712 0.348 0.252 1.2e-12
UNIPROTKB|F1MDJ6866 DMGDH "Uncharacterized protein 0.708 0.347 0.253 2e-11
UNIPROTKB|F1PK75794 DMGDH "Uncharacterized protein 0.710 0.380 0.245 4.9e-11
UNIPROTKB|F1PKA8838 DMGDH "Uncharacterized protein 0.710 0.360 0.245 5.3e-11
UNIPROTKB|P64220367 gcvT "Aminomethyltransferase" 0.712 0.825 0.245 1.4e-10
TAIR|locus:2206051 AT1G60990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1454 (516.9 bits), Expect = 6.2e-149, P = 6.2e-149
 Identities = 281/409 (68%), Positives = 331/409 (80%)

Query:    14 VGSTSRLHNTRTTKFFQNGVVLTQKKTLSLR----RRRSASIPPTAV----LPFDLSPPP 65
             + S S + NT       NG VL ++++LSLR    R R   +   +     L FD SPPP
Sbjct:    16 IDSVSHITNTALLPCLYNGTVL-RRRSLSLRKCGFRERKFQLRCVSASSDSLQFDFSPPP 74

Query:    66 IDHDLLETVKSEGAKISGEGIVETFGNDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQF 125
             IDHD L+T+   G K+S +G+VE+F ND EALDA DNGV  VDLSHFGRIRVSGDDR  F
Sbjct:    75 IDHDFLDTISVSGGKVSEDGVVESFDNDDEALDAFDNGVVVVDLSHFGRIRVSGDDRAHF 134

Query:   126 LHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIMKNAVILVVSPLTCSSITEMLNK 185
             LHNQ+TANFE L EGQGCDTVFVTPTARTIDIAHAWIMKNA++L VSP TC SI EMLNK
Sbjct:   135 LHNQTTANFESLYEGQGCDTVFVTPTARTIDIAHAWIMKNAILLTVSPTTCQSIIEMLNK 194

Query:   186 YVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVG 245
             Y+FFADKVEI+DITKQTCLF + GPKSNQ+M  LNLGDL+G+ YG H+HYS +GMPITVG
Sbjct:   195 YIFFADKVEIKDITKQTCLFALAGPKSNQIMSKLNLGDLIGQPYGRHQHYSFDGMPITVG 254

Query:   246 VGNVISEEGFSLLMSPAAAGSVWETLLSQGAVPMGSNAWEKLRIIKGRPAPGKELTNEFN 305
             VG++IS+EGF++LMSP  A SVW+TLL++GA+PMGS AWEKLRI +GRPAP +EL+ EFN
Sbjct:   255 VGSLISDEGFTMLMSPGGAVSVWKTLLAEGAIPMGSVAWEKLRITQGRPAPERELSKEFN 314

Query:   306 VLEAGLWNSISLDKGCYKGQETISRLITYDGLKQRLWGICLSAPAEPGSPIIVDGKKVGK 365
             VLEAGLWNSISL+KGCYKGQETI+RL+TYDG+KQRL G+ LSAP+EPGS I VDGKKVGK
Sbjct:   315 VLEAGLWNSISLNKGCYKGQETIARLMTYDGIKQRLCGLNLSAPSEPGSTITVDGKKVGK 374

Query:   366 LTSYTLGRKESDHFGLGYIKRKDALGGDTVTVGDNIVGTVVEVPFLARQ 414
             LTSYT G+  S HFGLGYIK++ A  G+TVTVG++I G V EVP+LARQ
Sbjct:   375 LTSYTGGKNGSGHFGLGYIKKQAASIGNTVTVGEDISGIVSEVPYLARQ 423
GO:0004047 "aminomethyltransferase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0009507 "chloroplast" evidence=IDA
GO:0016226 "iron-sulfur cluster assembly" evidence=IGI
TIGR_CMR|CHY_0489 CHY_0489 "glycine cleavage system T protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3396 SPO_3396 "FAD dependent oxidoreductase/aminomethyl transferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4449 BA_4449 "glycine cleavage system T protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|F1RF50 DMGDH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1921379 Dmgdh "dimethylglycine dehydrogenase precursor" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1MDJ6 DMGDH "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PK75 DMGDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PKA8 DMGDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P64220 gcvT "Aminomethyltransferase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.2LOW CONFIDENCE prediction!
4th Layer2.1.2.10LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
pfam01571212 pfam01571, GCV_T, Aminomethyltransferase folate-bi 2e-45
COG0354305 COG0354, COG0354, Predicted aminomethyltransferase 7e-43
COG0404379 COG0404, GcvT, Glycine cleavage system T protein ( 8e-32
PRK00389359 PRK00389, gcvT, glycine cleavage system aminomethy 5e-24
TIGR0331767 TIGR03317, ygfZ_signature, folate-binding protein 1e-19
TIGR00528362 TIGR00528, gcvT, glycine cleavage system T protein 4e-17
PLN02319404 PLN02319, PLN02319, aminomethyltransferase 3e-12
pfam0866995 pfam08669, GCV_T_C, Glycine cleavage T-protein C-t 2e-10
TIGR01372985 TIGR01372, soxA, sarcosine oxidase, alpha subunit 8e-07
PRK13579370 PRK13579, gcvT, glycine cleavage system aminomethy 3e-04
>gnl|CDD|216578 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain Back     alignment and domain information 
 Score =  156 bits (396), Expect = 2e-45
 Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 7/211 (3%)

Query: 107 VDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KN 165
            D+SH G+I VSG D   FL    T +   L+ GQ   T+ +      +D    + + ++
Sbjct: 2   FDVSHMGKIEVSGPDAAAFLQRLLTNDVSKLKPGQATYTLLLNEKGGILDDLTVYRLGED 61

Query: 166 AVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV 225
             +LVV+          L KY  F  KV + D+T +  +  + GPK+ +++++L    L 
Sbjct: 62  EFLLVVNAANAEKDLAWLRKYAVF-SKVTVADVTDELAVLALQGPKARELLQELTDLSLE 120

Query: 226 GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLS----QGAVPMGS 281
              + +       G P+ V       E+G+ + +    A ++WE LL      G  P G 
Sbjct: 121 ALPFFSFAEIEGGG-PVRVSRTGYTGEDGYEIYVPAEDAVALWEALLEAGKEAGLKPAGL 179

Query: 282 NAWEKLRIIKGRPAPGKELTNEFNVLEAGLW 312
            A + LRI  G P  G +L  E   LEAGL 
Sbjct: 180 GARDSLRIEAGYPLYGHDLDEETTPLEAGLG 210

This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyzes the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase. Length = 212
>gnl|CDD|223431 COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|234742 PRK00389, gcvT, glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>gnl|CDD|234167 TIGR03317, ygfZ_signature, folate-binding protein YgfZ Back     alignment and domain information
>gnl|CDD|233010 TIGR00528, gcvT, glycine cleavage system T protein Back     alignment and domain information
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase Back     alignment and domain information
>gnl|CDD|219963 pfam08669, GCV_T_C, Glycine cleavage T-protein C-terminal barrel domain Back     alignment and domain information
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>gnl|CDD|237435 PRK13579, gcvT, glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 425
KOG2844856 consensus Dimethylglycine dehydrogenase precursor 100.0
COG0404379 GcvT Glycine cleavage system T protein (aminomethy 100.0
PLN02319404 aminomethyltransferase 100.0
PRK13579370 gcvT glycine cleavage system aminomethyltransferas 100.0
PRK12486368 dmdA putative dimethyl sulfoniopropionate demethyl 100.0
PRK00389359 gcvT glycine cleavage system aminomethyltransferas 100.0
TIGR00528361 gcvT glycine cleavage system T protein. Eukaryotic 100.0
TIGR01372985 soxA sarcosine oxidase, alpha subunit family, hete 100.0
KOG2770401 consensus Aminomethyl transferase [Amino acid tran 100.0
PRK09559327 putative global regulator; Reviewed 100.0
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 100.0
COG0354305 Predicted aminomethyltransferase related to GcvT [ 100.0
KOG2929348 consensus Transcription factor, component of CCR4 99.97
TIGR0331767 ygfZ_signature folate-binding protein YgfZ. YgfZ i 99.82
PF0866995 GCV_T_C: Glycine cleavage T-protein C-terminal bar 99.82
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 99.82
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 99.07
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 98.83
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 97.36
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 97.02
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 96.34
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 95.92
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 95.59
PF0817092 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 95.2
PRK05291 449 trmE tRNA modification GTPase TrmE; Reviewed 92.99
COG0486 454 ThdF Predicted GTPase [General function prediction 91.41
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 88.4
PRK00389359 gcvT glycine cleavage system aminomethyltransferas 86.62
TIGR00528361 gcvT glycine cleavage system T protein. Eukaryotic 83.66
COG0404379 GcvT Glycine cleavage system T protein (aminomethy 83.43
TIGR00450 442 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE 81.69
PLN02319404 aminomethyltransferase 81.02
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-84  Score=662.14  Aligned_cols=396  Identities=24%  Similarity=0.331  Sum_probs=366.2

Q ss_pred             EEEeccccc----eecccccCccCCcchhhhcccccccceEeeecCCC---CCCCCCCCCCCCCcccHHHHHHCCCeEec
Q 014411           11 HLIVGSTSR----LHNTRTTKFFQNGVVLTQKKTLSLRRRRSASIPPT---AVLPFDLSPPPIDHDLLETVKSEGAKISG   83 (425)
Q Consensus        11 ~~~~~~~~~----~~~~r~~~~~~~~~~~~~k~~e~~~~~~~~~~p~~---~gr~~~~~p~~~~~~l~~~~~~~Ga~f~~   83 (425)
                      -||.|+|+.    +|+|||+.++.|+.|+++|++|+|+++|++.||++   |||++|++|      ||++++++||+|++
T Consensus       397 wi~~g~p~~d~~~~D~~Rf~~~~~~~~~lr~r~~Es~~~nys~~yp~~e~~agRnlR~sp------ly~~L~~aGav~~e  470 (856)
T KOG2844|consen  397 WIIHGQPPLDVHELDLRRFGKLQTNRYFLRERAHESYGKNYSVVYPKEEFQAGRNLRMSP------LYDRLESAGAVFGE  470 (856)
T ss_pred             HhhcCCCCccchhccHHHhhhhhcccHHHhhhchhhhhcccccccchhhhccccccccCc------cHHHHHhcccchhh
Confidence            378899988    99999999998888999999999999999999999   999999999      99999999999999


Q ss_pred             -CC--cccccC--------------------Ch----HHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccCCCC
Q 014411           84 -EG--IVETFG--------------------ND----GEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEI  136 (425)
Q Consensus        84 -~G--~p~~f~--------------------~~----~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tndi~~  136 (425)
                       .|  ||.+|-                    +|    +.||+|||+.|+++|+|.|+|+.|.|+||.+.||+++++|++.
T Consensus       471 ~~G~ERP~~F~~~~kd~~~~~~~q~~tf~kp~wfd~V~SE~~acrerv~v~DmS~F~Kf~i~G~da~e~ld~LfSanv~~  550 (856)
T KOG2844|consen  471 KHGWERPGWFYPPGKDDQYLPYGQDSTFRKPEWFDPVGSEYKACRERVGVFDMSSFGKFDITGQDAVELLDYLFSANVDV  550 (856)
T ss_pred             hccccCCCccCCCChhhhcccccccccccCCcchhhhHHHHHHHHhhceEeeccccceeeeccHHHHHHHHHHhhcCCCC
Confidence             88  997761                    22    7999999999999999999999999999999999999999995


Q ss_pred             CCCCceEEeeeeCCCCcEE-EEEEEEEeCCeEEEEECCCChHHHHHHHHhcccC-CCCeEEEEecCcEEEEEEeCCChHH
Q 014411          137 LREGQGCDTVFVTPTARTI-DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFF-ADKVEIQDITKQTCLFVVVGPKSNQ  214 (425)
Q Consensus       137 l~~G~~~~t~~Ln~~G~i~-d~~iv~~~~d~~~l~~~~~~~~~~~~~L~~~~~~-~~~V~i~d~t~~~~~l~l~GP~a~~  214 (425)
                       ++|..+||+|||++|++. |.++.++++++|+|+.+...+.+.+.||+++... ..+|.++|+|++|++|+|+||.||.
T Consensus       551 -~vg~tv~T~mln~~Gg~e~D~tvsrl~~~~f~mia~t~qq~~~~~wi~k~~~~~~~~v~l~DvT~~~~~l~i~GP~sR~  629 (856)
T KOG2844|consen  551 -PVGSTVYTGMLNPKGGYEADCTVSRLSPRGFFMIAGTIQQLHDLSWIKKEMPKGGSNVELKDVTDELGALSIIGPQSRK  629 (856)
T ss_pred             -CCCceeeeeeecCCCCeEeeeeeeeecCCceEEEccchhhhhhHHHHHHHhhccCCceeeeechhhhceeeecCchHHH
Confidence             899999999999999999 6688899999999999999999999999998532 2379999999999999999999999


Q ss_pred             HHHhcccCCCCC--CCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhCCC----CCCCHHHHHHHH
Q 014411          215 VMRDLNLGDLVG--EAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQGA----VPMGSNAWEKLR  288 (425)
Q Consensus       215 vl~~l~~~dl~~--~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~aG~----~~~G~~a~~~lR  288 (425)
                      +|++|++.|+++  |||.+++.+.++++.++++|++++||+|||||+|++++.+||++|++||+    +.+|.+|+++||
T Consensus       630 vLqelt~~dls~~~fp~~~~k~l~vg~~girairis~~GELG~~Lyip~e~~~~vY~~im~AG~~~~l~naGyya~~aLr  709 (856)
T KOG2844|consen  630 VLQELTDADLSDDHFPFLTTKELKVGNAGIRAIRISHTGELGWELYIPNEDAVAVYRAIMNAGQEEGLQNAGYYALRALR  709 (856)
T ss_pred             HHHhccCCCCCccccCcceeeeeeccccceEEEEEEeccccceEEEechHHHHHHHHHHHhhhhhhccccchhHHHHHHH
Confidence            999999999997  99999999999999999999999999999999999999999999999985    789999999999


Q ss_pred             HHcCCCCCCCCCCCCCCccccccccccccCCC-CcccHHHHHHHHhhCCCceEEEEEEEcC---CCCCCCceeeCCeeee
Q 014411          289 IIKGRPAPGKELTNEFNVLEAGLWNSISLDKG-CYKGQETISRLITYDGLKQRLWGICLSA---PAEPGSPIIVDGKKVG  364 (425)
Q Consensus       289 iE~G~~~~g~dl~~~~~P~EagL~~~V~~~Kg-cfiGqEal~r~~~~~~~~rrLv~l~~~~---~~~~g~~I~~~g~~VG  364 (425)
                      |||+|..||.|++++.||+|+|+.+.|+|+|+ |||||+|++.+++ .|+|||||.|++++   ++++||+||.||+.||
T Consensus       710 iEK~y~~Wg~dl~~d~tPlEaGl~f~vk~k~p~dFiGk~ALeqqra-~GlkkrlV~l~l~d~d~~~~G~E~I~rnG~~VG  788 (856)
T KOG2844|consen  710 IEKFYRAWGQDLNPDTTPLEAGLEFRVKLKKPADFIGKQALEQQKA-EGLKKRLVCLTLDDHDPDPWGGEPIYRNGQVVG  788 (856)
T ss_pred             HHHHHHhhccccCCCCChhhccceeEEecCCCccchhHHHHHHHHH-hhhhheEEEEEecCCCCCccCCcceeeCCEEEe
Confidence            99999999999999999999999999999998 9999999999985 88999999999985   3788999999999999


Q ss_pred             EEEEeeeCCCCCCeEEEEEEeCC--------CCCCCC-EEEe-CCeEeEEEEe-CCCCCCC
Q 014411          365 KLTSYTLGRKESDHFGLGYIKRK--------DALGGD-TVTV-GDNIVGTVVE-VPFLARQ  414 (425)
Q Consensus       365 ~vtS~~~s~~~~~~iala~v~~~--------~a~~g~-~l~~-g~~~~a~v~~-~Pf~~~~  414 (425)
                      .+||++||++++|++++|||+..        +...|. +|++ |++++|++.- .||.+..
T Consensus       789 ~ttsa~Y~ytl~k~v~~gyV~n~~e~~V~~d~V~sg~yEvdi~Gkry~a~~~l~sP~~pt~  849 (856)
T KOG2844|consen  789 NTTSAAYGYTLGKSVCLGYVHNFEEFPVSLDFVGSGEYEVDIAGKRYPAKANLHSPSLPTE  849 (856)
T ss_pred             eeeeccceeeecceEEEEEecccccCccCHHHhcCCcEEEEecccccceeEEecCCCCCcc
Confidence            99999999999999999999943        333343 4554 9999998864 4887665

>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09559 putative global regulator; Reviewed Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>KOG2929 consensus Transcription factor, component of CCR4 transcriptional complex [Transcription] Back     alignment and domain information
>TIGR03317 ygfZ_signature folate-binding protein YgfZ Back     alignment and domain information
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [] Back     alignment and domain information
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
1yx2_A365 Crystal Structure Of The Probable Aminomethyltransf 5e-15
3ttg_A355 Crystal Structure Of Putative Aminomethyltransferas 2e-14
1woo_A364 Crystal Structure Of T-Protein Of The Glycine Cleav 5e-13
3gsi_A827 Crystal Structure Of D552a Dimethylglycine Oxidase 3e-09
1pj5_A830 Crystal Structure Of Dimethylglycine Oxidase Of Art 7e-09
1v5v_A401 Crystal Structure Of A Component Of Glycine Cleavag 1e-07
1vrq_A964 Crystal Structure Of Heterotetrameric Sarcosine Oxi 4e-04
1wsr_A375 Crystal Structure Of Human T-Protein Of Glycine Cle 5e-04
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis Length = 365 Back     alignment and structure 
Iteration: 1

 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 130/299 (43%), Gaps = 12/299 (4%)
Query: 108 DLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHAWIM-KNA 166
           D+SH G + VSG+D + FL    T +   L  G+   T    P   T+D    +   +N 
Sbjct: 51  DVSHXGEVEVSGNDSLSFLQRLXTNDVSALTPGRAQYTAXCYPDGGTVDDLLIYQKGENR 110
Query: 167 VILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLVG 226
            +LV++            ++   A  V+I + + Q  L  V GPK+  ++++L   D+  
Sbjct: 111 YLLVINASNIDKDLAWXKEHA--AGDVQIDNQSDQIALLAVQGPKAEAILKNLTDADVSA 168
Query: 227 -EAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLL----SQGAVPMGS 281
            + +       ++G    +       E+G+ +      A  +W+ ++    + G +P G 
Sbjct: 169 LKPFAFIDEADISGRKALISRTGYTGEDGYEIYCRSDDAXHIWKKIIDAGDAYGLIPCGL 228
Query: 282 NAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGC-YKGQETISRLITYDGLKQR 340
            A + LR     P  G+ELT +   +EAG+  ++   K   + G+  +S     +G K++
Sbjct: 229 GARDTLRFEANIPLYGQELTRDITPIEAGIGFAVKHKKESDFFGKSVLSEQ-KENGAKRK 287
Query: 341 LWGICLSAPAEP--GSPIIVDGKKVGKLTSYTLGRKESDHFGLGYIKRKDALGGDTVTV 397
           L G+       P  G  +  +GK VGK+T+ T       + GL  I  + +  G  V V
Sbjct: 288 LVGLEXIEKGIPRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSETSEIGTVVDV 346
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From Leptospirillum Rubarum Length = 355 Back     alignment and structure
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage System Length = 364 Back     alignment and structure
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant Of Arthrobacter Globiformis In Complex With Tetrahydrofolate Length = 827 Back     alignment and structure
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of Arthrobacter Globiformis In Complex With Acetate Length = 830 Back     alignment and structure
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5 A Resolution Length = 401 Back     alignment and structure
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 In Complex With Folinic Acid Length = 964 Back     alignment and structure
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage System Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query425
3ttg_A355 Putative aminomethyltransferase; structural genomi 3e-85
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 3e-58
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 3e-38
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 2e-27
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 3e-25
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, st 7e-23
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 9e-23
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 2e-21
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 2e-20
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 1e-19
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; 9e-15
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355 Back     alignment and structure
 Score =  263 bits (675), Expect = 3e-85
 Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 12/325 (3%)

Query: 99  AADNGVAAVDLS-HFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDI 157
            A         S     I V G+DR  FL   ++ +     E     + F+ P AR +  
Sbjct: 31  IAHKKFGLFYPSVSRPSIFVEGEDRKNFLQGIASQDILKQDEKSLSYSFFLNPKARILFD 90

Query: 158 AHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQVMR 217
           A     ++ + L     T       L KY+FF  K +I D++       +VGP++  V+ 
Sbjct: 91  AWCGNFEDKIALFPPAGTREEFVNHLKKYLFFRTKAKITDMSDHFREIRLVGPETISVLL 150

Query: 218 DLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLL----S 273
            L   +  G ++   ++     +  T    N+       L +      +  ++L     +
Sbjct: 151 SLFDNNFSGSSFRMLKNGGYVLIHPTSFQHNLDVGLQADLFIPIDQFETTQKSLEDFTSN 210

Query: 274 QGAVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL-WNSISLDKGCYKGQETISRLI 332
           +G V +  +++      KG P    EL + F   EAGL    +S +KGCY GQE ++RL 
Sbjct: 211 KGGVLLDESSYLAYLTEKGIPLFPSELNDSFFPAEAGLDSVGVSYNKGCYVGQEPVTRLK 270

Query: 333 TYDGLKQRLWGICLSAPAEP--GSPIIV----DGKKVGKLTSYTLGRKESDHFGLGYIKR 386
               L + L G  L     P    P+ +    DG + G LT  +         GLGYIKR
Sbjct: 271 FQGHLNRSLAGFRLEGGPFPKMEFPVTLFNPKDGNEAGILTRTSSSDILGSGIGLGYIKR 330

Query: 387 KDALGGDTVTVGDNIVGTVVEVPFL 411
             +  G  + + D  +  V  +PF+
Sbjct: 331 NFSENGTELLLPDAQLVRVHSLPFV 355
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Length = 338 Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Length = 364 Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401 Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Length = 369 Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Length = 375 Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Length = 393 Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Length = 381 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 100.0
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 100.0
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 100.0
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 100.0
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 100.0
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 100.0
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 100.0
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, st 100.0
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; 100.0
3ttg_A355 Putative aminomethyltransferase; structural genomi 100.0
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 100.0
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 99.96
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 99.95
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 96.73
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 96.59
2bry_A497 NEDD9 interacting protein with calponin homology a 95.9
3gee_A 476 MNME, tRNA modification GTPase MNME; G protein, cy 94.23
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 89.16
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 88.22
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 87.59
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 87.09
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 86.91
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 85.8
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 85.62
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U3 83.92
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U3 82.05
1xzp_A 482 Probable tRNA modification GTPase TRME; GTP-bindin 81.27
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
Probab=100.00  E-value=1e-80  Score=630.87  Aligned_cols=347  Identities=20%  Similarity=0.257  Sum_probs=322.7

Q ss_pred             CCCCCCCCCCcccHHHHHHCCCeEec-CC--cccccC-ChHHHHHHHhhCcEEEeCCCceEEEEEcchHHHHHhhccccC
Q 014411           58 PFDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFG-NDGEALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTAN  133 (425)
Q Consensus        58 ~~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~-~~~~E~~avr~~vgl~DlS~~~~i~V~G~dA~~fLq~l~tnd  133 (425)
                      ++|+||      ||++|+++||+|.+ .|  +|.+|+ ++.+||+|+|++|+|||+|+|++|+|+|+||.+|||+++|||
T Consensus        32 ~~r~tp------l~~~h~~~GA~~~~~~gw~~P~~y~~~~~~E~~avR~~~gl~DvSh~g~i~V~G~DA~~fL~~l~tnd  105 (393)
T 3gir_A           32 SLKTLP------LYELHEKAGAKFGAFAGWRMPLTYPLGVLKEHLHTRAHAGLFDISHMKLIAVEGPKAVEFLSYALPVD  105 (393)
T ss_dssp             CCEECT------THHHHHHTTCEEEEETTEEEEEECTTCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHSSSC
T ss_pred             ccccCc------chHHHHHcCCEEEeeCCEecchhhcCCHHHHHHHHHhCeEEEeCCCcEEEEEECCCHHHHhhhhcccc
Confidence            466666      99999999999999 46  999998 899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCceEEeeeeCCCCcEEEEEEEEE-eCCeEEEEECCCChHHHHHHHHhcccCCCCeEEEEecCcEEEEEEeCCCh
Q 014411          134 FEILREGQGCDTVFVTPTARTIDIAHAWI-MKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKS  212 (425)
Q Consensus       134 i~~l~~G~~~~t~~Ln~~G~i~d~~iv~~-~~d~~~l~~~~~~~~~~~~~L~~~~~~~~~V~i~d~t~~~~~l~l~GP~a  212 (425)
                      |++|++|+++|++|||++|+|+||+++++ .+|+|+|+++++..+.+++||++++.. .+|+|  .++++++|+||||+|
T Consensus       106 v~~l~~G~~~yt~~ln~~G~i~dD~~V~rl~~d~~~lv~~a~~~~~~~~~L~~~~~~-~~V~i--~~~~~a~lalqGP~A  182 (393)
T 3gir_A          106 AALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGNAQADFAELEKRAFG-FECQV--IALERVLLALQGPQA  182 (393)
T ss_dssp             TTTSCTTBEEEEEEECTTCCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHTTT-SSCEE--EECCCEEEEEESTTH
T ss_pred             cccCCCCcEEEEEEECCCCcEEEEEEEEEecCCEEEEEECchhHHHHHHHHHhhccC-CceEE--EECCEEEEEEECccH
Confidence            99999999999999999999998877765 589999999999999999999999754 37999  678899999999999


Q ss_pred             HHHHHhcccCCCCCCCCceeeEEEECCeeEEEeecCccCCCeEEEEeccccHHHHHHHHHhC-CCCCCCHHHHHHHHHHc
Q 014411          213 NQVMRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQ-GAVPMGSNAWEKLRIIK  291 (425)
Q Consensus       213 ~~vl~~l~~~dl~~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~~~~~~a~~l~~~L~~a-G~~~~G~~a~~~lRiE~  291 (425)
                      +++|+++++ |++++||++++.+.+   ++++.|++|+||+||||++|.+++..+|++|+++ |..|+|+.||++||||+
T Consensus       183 ~~vL~~l~~-~l~~~~~~~~~~~~i---~~~i~R~gytGE~G~Ei~~p~~~a~~lw~~L~~a~g~~p~Gl~A~d~LRiEa  258 (393)
T 3gir_A          183 AAVLADAGL-PGNELLFMQGFEPQQ---DWFITRSGYTGEDGFEIALPIGCARALAEKLLGDSRVEWVGLAARDSLRLEA  258 (393)
T ss_dssp             HHHHHHTTC-CCTTCCTTBEECSST---TCEEESCCSSSSSEEEEEECHHHHHHHHHHHHTSTTEEECCHHHHHHHHHHT
T ss_pred             HHHHHHhcC-chhhcccceeEEEEE---eEEEEeCCCCCCCeEEEEEEHHHHHHHHHHHHhcCCceeccccchhhHHHhc
Confidence            999999988 888999998876555   8999999999999999999999999999999997 67999999999999999


Q ss_pred             CCCCCCCCCCCCCCccccccccccccC---CCCcccHHHHHHHHhhCCCceEEEEEEEcC--CCCCCCcee-eCCeeeeE
Q 014411          292 GRPAPGKELTNEFNVLEAGLWNSISLD---KGCYKGQETISRLITYDGLKQRLWGICLSA--PAEPGSPII-VDGKKVGK  365 (425)
Q Consensus       292 G~~~~g~dl~~~~~P~EagL~~~V~~~---KgcfiGqEal~r~~~~~~~~rrLv~l~~~~--~~~~g~~I~-~~g~~VG~  365 (425)
                      |+|.||.|++++++|+|+||+|+|+|+   ||||+|||+++|+++ .|++||||+|++++  ++..|++|+ .+|+.||+
T Consensus       259 G~p~~g~dl~~~~~P~EagL~~~V~~~k~~Kg~fiGqeal~r~~~-~G~~rrlvgl~~~~~~~~~~G~~v~~~~g~~vG~  337 (393)
T 3gir_A          259 GLCLHGNDITPDTTPIDAALTWAVPKNVREKAQFYGAKAFLESLQ-KGPSRCRVGLKPQTRQPIRAGAVLFDNEGNRIGV  337 (393)
T ss_dssp             TCCCBTTTBCTTCCTTTTTCGGGSCHHHHHHCCSTTHHHHHHHHH-HCCSSEEEEEEESSSSCCCTTCEEECTTSCEEEE
T ss_pred             CcccchhhcCCCCCHHHCCchheecCCCCCCCCCcCHHHHHHHHh-cCCCeEEEEEEECCCcCCCCCCEEEccCCeEEEE
Confidence            999999999999999999999999998   799999999999986 45889999999985  577899999 78999999


Q ss_pred             EEEeeeCCCCCCeEEEEEEeCCCCCCCCEEEe---CCeEeEEEEeCCCCCCCCCCC
Q 014411          366 LTSYTLGRKESDHFGLGYIKRKDALGGDTVTV---GDNIVGTVVEVPFLARQSPPL  418 (425)
Q Consensus       366 vtS~~~s~~~~~~iala~v~~~~a~~g~~l~~---g~~~~a~v~~~Pf~~~~~~~~  418 (425)
                      |||++|||+++++||||||+.+++++|++|++   |++++|+|++.||+++.++++
T Consensus       338 VTS~~~sp~l~~~iaLa~v~~~~~~~G~~l~v~i~g~~~~a~v~~~PF~~~~~~~~  393 (393)
T 3gir_A          338 VTSGGFGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIALSVHSLPFVEQRYFKG  393 (393)
T ss_dssp             EEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCC-
T ss_pred             EEEEEECCCCCcEEEEEEEcHHHcCCCCEEEEEECCEEEEEEEecCCCCCCCCCCC
Confidence            99999999999999999999999999999886   888999999999999998763
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Back     alignment and structure
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 425
d1vlya2241 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-t 1e-35
d1pj5a4315 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase 4e-28
d1vloa2274 d.250.1.1 (A:4-277) Glycine cleavage system T prot 3e-27
d1wosa2278 d.250.1.1 (A:1-278) Glycine cleavage system T prot 7e-24
d1v5va2310 d.250.1.1 (A:3-312) Glycine cleavage system T prot 2e-19
d1wosa183 b.44.2.1 (A:279-361) Glycine cleavage system T pro 5e-09
d1v5va189 b.44.2.1 (A:313-401) Glycine cleavage system T pro 6e-08
d1pj5a188 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, 2e-05
d1vloa190 b.44.2.1 (A:278-367) Glycine cleavage system T pro 1e-04
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 241 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Hypothetical protein YgfZ, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  129 bits (325), Expect = 1e-35
 Identities = 40/238 (16%), Positives = 71/238 (29%), Gaps = 12/238 (5%)

Query: 96  ALDAADNGVAAVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTI 155
              +A   +  + L  +    ++G D  +++  Q TA+   + E Q           +  
Sbjct: 9   PTASARLPLTLMTLDDWALATITGADSEKYMQGQVTADVSQMAEDQHLLAAHCDAKGKMW 68

Query: 156 DIAHAWIMKNAVILVVSPLTCSSITEMLNKYVFFADKVEIQDITKQTCLFVVVGPKSNQV 215
                +   +    +            L KY  F+          +  L  V G ++   
Sbjct: 69  SNLRLFRDGDGFAWIERRSVREPQLTELKKYAVFSKV--TIAPDDERVLLGVAGFQARAA 126

Query: 216 MRDLNLGDLVGEAYGTHRHYSVNGMPITVGVGNVISEEGFSLLMSPAAAGSVWETLLSQG 275
           + +L       E        +                    L+++  A  ++    L   
Sbjct: 127 LANLFSELPSKEKQVVKEGATTLLWFEH--------PAERFLIVTDEATANMLTDKLRGE 178

Query: 276 AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGL--WNSISLDKGCYKGQETISRL 331
           A    S  W  L I  G P      + +F      L     IS  KGCY GQE ++R 
Sbjct: 179 AELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQALGGISFKKGCYTGQEMVARA 236
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 315 Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 278 Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 310 Back     information, alignment and structure
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 83 Back     information, alignment and structure
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 89 Back     information, alignment and structure
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Length = 88 Back     information, alignment and structure
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 90 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query425
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 100.0
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 100.0
d1v5va2310 Glycine cleavage system T protein, GcvT {Pyrococcu 100.0
d1vloa2274 Glycine cleavage system T protein, GcvT {Escherich 100.0
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 100.0
d1v5va189 Glycine cleavage system T protein, GcvT {Pyrococcu 99.76
d1pj5a188 N,N-dimethylglycine oxidase, C-terminal domain {Ar 99.73
d1wosa183 Glycine cleavage system T protein, GcvT {Thermotog 99.67
d1vloa190 Glycine cleavage system T protein, GcvT {Escherich 99.56
d1vlya182 Hypothetical protein YgfZ, C-terminal domain {Esch 96.87
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 93.54
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 93.2
d1v5va2310 Glycine cleavage system T protein, GcvT {Pyrococcu 84.6
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 83.79
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 82.02
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: N,N-dimethylglycine oxidase domain 3
species: Arthrobacter globiformis [TaxId: 1665]

Probab=100.00  E-value=3.3e-65  Score=502.07  Aligned_cols=270  Identities=21%  Similarity=0.308  Sum_probs=246.6

Q ss_pred             CCCCCCCCCCCcccHHHHHHCCCeEec-CC--cccccCC----------------------------hHHHHHHHhhCcE
Q 014411           57 LPFDLSPPPIDHDLLETVKSEGAKISG-EG--IVETFGN----------------------------DGEALDAADNGVA  105 (425)
Q Consensus        57 r~~~~~p~~~~~~l~~~~~~~Ga~f~~-~G--~p~~f~~----------------------------~~~E~~avr~~vg  105 (425)
                      ||+|+||      ||++|+++||+|++ .|  ||.+|.+                            ..+||+|||++||
T Consensus         1 R~lr~sp------l~~~h~~~GA~f~~~~Gwe~P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~E~~avR~~vg   74 (315)
T d1pj5a4           1 RNLRVSP------FHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVA   74 (315)
T ss_dssp             CCSBCCT------THHHHHHTTEEEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCE
T ss_pred             CCCccCc------cHHHHHHcCCEEEEecceecccccCcCCccccccccccccccccccccccccHHHHHHHHHHHHhcc
Confidence            8999999      99999999999999 67  9988842                            3789999999999


Q ss_pred             EEeCCCceEEEEEcchHHHHHhhccccCCCCCCCCceEEeeeeCCCCcEEEEEEE-EEeCCeEEEEECCCChHHHHHHHH
Q 014411          106 AVDLSHFGRIRVSGDDRIQFLHNQSTANFEILREGQGCDTVFVTPTARTIDIAHA-WIMKNAVILVVSPLTCSSITEMLN  184 (425)
Q Consensus       106 l~DlS~~~~i~V~G~dA~~fLq~l~tndi~~l~~G~~~~t~~Ln~~G~i~d~~iv-~~~~d~~~l~~~~~~~~~~~~~L~  184 (425)
                      |||+|+|++|+|+|+||.+|||+++|||++. ++|+++|++|||++|+|++|+++ ++.+|+|+|+++++....+..|+.
T Consensus        75 lfD~S~~g~i~v~G~da~~fL~~l~t~di~~-~~G~~~yt~~ln~~Ggi~~D~~v~r~~~~~f~l~~~~~~~~~~~~~~~  153 (315)
T d1pj5a4          75 MYDMTPLKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAA  153 (315)
T ss_dssp             EEECTTSCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHH
T ss_pred             eeccccceeEEeeccchHHHhhhhhcccccc-ccCceeEEEeeccccCeeeeeeeeecccccccccccchhhhhhhhhhh
Confidence            9999999999999999999999999999985 78999999999999999966444 578899999888777777777765


Q ss_pred             hcc----cCCCCeEEEEecCcEEEEEEeCCChHHHHHhcccCCCC--CCCCceeeEEEECCeeEEEeecCccCCCeEEEE
Q 014411          185 KYV----FFADKVEIQDITKQTCLFVVVGPKSNQVMRDLNLGDLV--GEAYGTHRHYSVNGMPITVGVGNVISEEGFSLL  258 (425)
Q Consensus       185 ~~~----~~~~~V~i~d~t~~~~~l~l~GP~a~~vl~~l~~~dl~--~~p~~~~~~~~i~g~~v~~~R~~~~ge~G~el~  258 (425)
                      ++.    ....+|+++|+|+++++|+||||+|+++|++++..+++  ++||++++.+.++|.+|++.|++|+||+||||+
T Consensus       154 ~~~~~~~~~~~~v~i~d~t~~~~~laiqGP~s~~vL~~l~~~~~~~~~~~~~~~~~~~i~g~~v~i~R~g~tGE~G~Ei~  233 (315)
T d1pj5a4         154 RHQTQSGSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELY  233 (315)
T ss_dssp             HHHHHHSCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEE
T ss_pred             hhhhhcccccccceeEecCcceeeeeecCchHHHHHHHccccccccccccccceeEEEECCEEEEEEecCccCCCeEEec
Confidence            542    12246999999999999999999999999999988876  499999999999999999999999999999999


Q ss_pred             eccccHHHHHHHHHhCC----CCCCCHHHHHHHHHHcCCCCCCCCCCCCCCccccccccccccCCCCcccHHHHHHHHh
Q 014411          259 MSPAAAGSVWETLLSQG----AVPMGSNAWEKLRIIKGRPAPGKELTNEFNVLEAGLWNSISLDKGCYKGQETISRLIT  333 (425)
Q Consensus       259 ~~~~~a~~l~~~L~~aG----~~~~G~~a~~~lRiE~G~~~~g~dl~~~~~P~EagL~~~V~~~KgcfiGqEal~r~~~  333 (425)
                      +|++++..||+.|+++|    .+|+|+.|+++||||+||+.||.|++++++|+|+||+|+|+|+|+||+|||||.+++.
T Consensus       234 ~~~~~a~~l~~~l~~ag~~~gi~p~G~~A~d~LRlE~G~~~~g~d~~~~~~P~EagL~~~v~~~K~~FiGkeAl~~~~~  312 (315)
T d1pj5a4         234 TSADNGQRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAKESFIGKGALEGRTE  312 (315)
T ss_dssp             EEHHHHHHHHHHHHHHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTTSSCCTTHHHHTTCCS
T ss_pred             ccHHHHHHHHHHHHhhhhcCCcEecCHHHHHHHHHHcCCCcccccCCCCCCHHHcCcchhhcCCCCCccCHHHHHHHHh
Confidence            99999999999999875    5899999999999999999999999999999999999999999999999999988763
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure